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Merge pull request #31 from ontologyportal/Thompson_14_Feb_2025
Added GenCausesTestData.java to create sentences and logic about "causes".
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‎lib/jackson-core-2.18.2.jar‎

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‎lib/jackson-databind-2.18.2.jar‎

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‎lib/jackson-datatype-jsr310-2.18.2.jar‎

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‎lib/ollama4j-1.0.93.jar‎

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‎src/main/java/com/articulate/nlp/GenCausesTestData.java‎

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package com.articulate.nlp;
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import io.github.ollama4j.OllamaAPI;
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import io.github.ollama4j.models.response.OllamaResult;
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import io.github.ollama4j.types.OllamaModelType;
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import io.github.ollama4j.utils.OptionsBuilder;
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import io.github.ollama4j.utils.Options;
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import java.io.FileWriter;
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import java.util.Collection;
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import java.util.Set;
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import java.util.Arrays;
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import java.util.List;
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import java.util.stream.Collectors;
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import java.io.IOException;
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import java.nio.ByteBuffer;
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import java.nio.channels.FileChannel;
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import java.nio.channels.FileLock;
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import java.nio.file.Path;
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import java.nio.file.Paths;
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import java.nio.file.StandardOpenOption;
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import java.nio.file.Files;
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import java.util.Random;
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import com.articulate.sigma.*;
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import java.util.*;
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import com.articulate.sigma.wordNet.WordNet;
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public class GenCausesTestData {
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public static boolean debug = false;
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public static KB kb;
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public static String outputFileEnglish = "causes-eng.txt";
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public static String outputFileLogic = "causes-log.txt";
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public static boolean EQUIVALENCE_MAPPINGS = false;
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public static String[] phrasesCauses = {
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" causes ",
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" leads to ",
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" results in ",
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" brings about ",
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" triggers ",
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" provokes ",
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" induces ",
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" produces ",
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" prompts ",
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" gives rise to ",
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" is responsible for "
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};
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public static String[] phrasesCausedBy = {
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" is caused by ",
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" is due to ",
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" is a result of ",
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" is because of ",
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" is brought about by ",
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" is triggered by ",
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" is provoked by ",
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" is induced by ",
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" is produced by ",
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" is prompted by ",
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" stems from ",
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" arises from ",
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" originates from ",
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" is driven by ",
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" is attributable to ",
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" can be traced back to "
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};
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/** ***************************************************************
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* Creates a file if one doesn't exist already.
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*/
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public static void createFileIfDoesNotExists(String fileName) {
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Path filePath = Paths.get(fileName);
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if (Files.exists(filePath)) {
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return;
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} else {
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try {
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Files.createFile(filePath);
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} catch (IOException e) {
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e.printStackTrace();
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}
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}
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}
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/** ***********************************************************************
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* Takes an enlish phrase and its logic equivalent.
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* Files are locked, so that if multiple processes are building
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* the dataset, the correspondence of english/logic pairs is preserved.
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*/
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public static void writeEnglishLogicPairToFile(String english, String logic) {
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FileChannel fileChannel1 = null;
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FileChannel fileChannel2 = null;
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FileLock lock1 = null;
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FileLock lock2 = null;
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try {
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fileChannel1 = FileChannel.open(Paths.get(outputFileEnglish), StandardOpenOption.WRITE, StandardOpenOption.APPEND);
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fileChannel2 = FileChannel.open(Paths.get(outputFileLogic), StandardOpenOption.WRITE, StandardOpenOption.APPEND);
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lock1 = fileChannel1.lock();
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lock2 = fileChannel2.lock();
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ByteBuffer buffer1 = ByteBuffer.wrap(english.getBytes());
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ByteBuffer buffer2 = ByteBuffer.wrap(logic.getBytes());
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fileChannel1.write(buffer1);
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fileChannel2.write(buffer2);
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} catch (IOException e) {
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e.printStackTrace();
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} finally {
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try {
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if (lock1 != null) lock1.release();
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if (fileChannel1 != null) fileChannel1.close();
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if (lock2 != null) lock2.release();
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if (fileChannel2 != null) fileChannel2.close();
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} catch (IOException e) {
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e.printStackTrace();
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}
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}
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}
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/** ***************************************************************
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* Takes a string which is a response to an Ollama query.
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* Removes all punctuation and splits camel case answers.
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* @return a clean ollama answer.
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*/
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private static String cleanOllamaResponse(String str) {
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StringBuilder result = new StringBuilder();
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for (char c : str.toCharArray()) {
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if (Character.isUpperCase(c) && result.length() > 0) {
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result.append(" ");
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}
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result.append(c);
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}
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String sentence = result.toString();
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sentence = Arrays.stream(sentence.split("\\s+"))
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.map(word -> word.substring(0, 1).toUpperCase() + word.substring(1).toLowerCase())
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.collect(Collectors.joining(" "));
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List<Character> punctuation = Arrays.asList('.', ',', '!', '?', ';', ':', '-', '(', ')', '[', ']', '{', '}', '"', '\'', ' ');
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sentence = sentence.chars()
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.mapToObj(c -> (char) c)
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.filter(c -> !punctuation.contains(c))
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.map(String::valueOf)
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.collect(Collectors.joining());
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return sentence;
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}
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/** ***************************************************************
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* Takes a string, such as "ThisIsAStringWithCapitalLetters"
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* and breaks it up into "This Is A String With Capital Letters"
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* @return a string broken up into words with spaces.
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*/
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public static String addSpaceBeforeCapitals(String input) {
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if (input == null || input.isEmpty()) {
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return input;
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}
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StringBuilder result = new StringBuilder();
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result.append(input.charAt(0)); // Append the first character as is
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for (int i = 1; i < input.length(); i++) {
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char currentChar = input.charAt(i);
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if (Character.isUpperCase(currentChar)) {
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result.append(' ');
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}
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result.append(currentChar);
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}
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return result.toString();
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}
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/** ***************************************************************
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* Given a term, looks up all the equivalent mappings of that therm
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* in WordNet, and returns a random mapping.
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* @return a random equivalent SUMO Mapping
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*/
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private static String getEquivalentSUMOMapping(String term) {
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Set<String> synsetOfTerm = WordNet.wn.getSynsetsFromWord(term.toLowerCase());
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ArrayList<String> equivalentTerms = new ArrayList();
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int counter = 0;
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for (String synset:synsetOfTerm) {
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if (debug) System.out.println("Synset of " + term + ": " + synset);
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String sumoMapping = WordNet.wn.getSUMOMapping(synset);
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if (sumoMapping != null) {
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sumoMapping = sumoMapping.substring(2);
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if (sumoMapping.charAt(sumoMapping.length() - 1) == '=' || EQUIVALENCE_MAPPINGS == false) {
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String sumoTerm = sumoMapping.substring(0, sumoMapping.length() - 1);
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if (debug) System.out.println("Equivalent mapping to: " + sumoTerm);
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if(kb.kbCache.subclassOf(sumoTerm, "Process")) {
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if (debug) System.out.println(sumoTerm + " is a process. Added.");
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equivalentTerms.add(sumoMapping.substring(0, sumoMapping.length() - 1));
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}
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}
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}
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}
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if (!equivalentTerms.isEmpty()) {
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Random rand = new Random();
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return equivalentTerms.get(rand.nextInt(equivalentTerms.size()));
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}
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return null;
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}
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/** *********************************************************************
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* Main method. Builds a test set of the form "<term> causes <term>"
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* and its logical equivalent.
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* First, selects a random process from SUMO.
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* Then asks ollama what is caused by that process.
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*/
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public static void main(String[] args) throws Exception {
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if (args == null || args.length < 2 || args.length > 3 || args[0].equals("-h"))
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System.out.println("Usage: GenCausesTestData <file prefix> <num to generate> <optional: -e (for equivalence mappings only)");
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outputFileEnglish = args[0] + "-eng.txt";
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outputFileLogic = args[0] + "-log.txt";
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int numToGenerate = Integer.parseInt(args[1]);
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if (args.length == 3 && args[2].equals("-e")) {
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EQUIVALENCE_MAPPINGS = true;
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System.out.println("Using ONLY equivalence mappings");
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}
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else {
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System.out.println("Drawing from equivalence and subsuming mappings.");
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}
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OllamaAPI ollamaAPI = new OllamaAPI();
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ollamaAPI.setVerbose(false);
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boolean RAW_PROMPT = false;
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Options options = new OptionsBuilder().setTemperature(1.0f).build();
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KBmanager.getMgr().initializeOnce();
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kb = KBmanager.getMgr().getKB(KBmanager.getMgr().getPref("sumokbname"));
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System.out.println("Finished loading KBs");
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Set<String> allSUMOTermsSet = kb.kbCache.getChildClasses("Process");
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RandSet allSUMOTermsRandSet = RandSet.listToEqualPairs(allSUMOTermsSet);
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createFileIfDoesNotExists(outputFileEnglish);
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createFileIfDoesNotExists(outputFileLogic);
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Random random = new Random();
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String englishSentence;
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int sentenceGeneratedCounter = 0;
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while (sentenceGeneratedCounter < numToGenerate) {
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if (debug) System.out.println("\n");
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String randomSumoProcess = allSUMOTermsRandSet.getNext();
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String randomSumoProcessEnglish = kb.getTermFormat("EnglishLanguage", randomSumoProcess);
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if (randomSumoProcessEnglish == null) {
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randomSumoProcessEnglish = addSpaceBeforeCapitals((randomSumoProcess));
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}
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if (debug) System.out.println("Random SUMO Process: " + randomSumoProcess);
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String prompt = "Just the response. In a single word, what does '" + randomSumoProcessEnglish + "' cause?";
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OllamaResult result =
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ollamaAPI.generate("llama3.2", prompt, RAW_PROMPT, options);
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if (debug) System.out.println("Ollama returns: " + result.getResponse());
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String responseOllamaEnglish = cleanOllamaResponse(result.getResponse());
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String responseInSumo = getEquivalentSUMOMapping(responseOllamaEnglish);
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if (responseInSumo != null) {
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if (random.nextBoolean()) {
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int randomIndex = random.nextInt(phrasesCauses.length);
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englishSentence = randomSumoProcessEnglish + phrasesCauses[randomIndex] + responseOllamaEnglish.toLowerCase() + ".\n";
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}
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else {
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int randomIndex = random.nextInt(phrasesCausedBy.length);
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englishSentence = responseOllamaEnglish.toLowerCase() + phrasesCausedBy[randomIndex] + randomSumoProcessEnglish + ".\n";
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}
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char firstChar = Character.toUpperCase(englishSentence.charAt(0));
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String remainingChars = englishSentence.substring(1).toLowerCase();
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englishSentence = firstChar + remainingChars;
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String logicPhrase = "( exists ( ?V1 ?V2) (and (instance ?V1 " + randomSumoProcess + " ) "
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+ " (instance ?V2 " + responseInSumo + " ) "
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+ " (causesSubclass ?V1 ?V2) ) )\n";
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if (debug) System.out.println("Resulting English sentence: '" + englishSentence + "'");
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if (debug) System.out.println("Resulting logic: '" + logicPhrase + "'");
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writeEnglishLogicPairToFile(englishSentence, logicPhrase);
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sentenceGeneratedCounter++;
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if (sentenceGeneratedCounter % 100 == 0) {
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System.out.print("...." + sentenceGeneratedCounter);
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}
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}
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else {
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if (debug) System.out.println("No related process for: " + result.getResponse());
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}
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}
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}
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}

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