Update submodule pointer (#220)

* Update submodule pointer
- This will include voltage conversion equations in the docs

* Update 0.4.5

- This requires changing workflows and some information in the docs because NeuropixelsVxyzHeadstage was changed to HeadstageNeuropixelsVxyz in the src code

Author: cjsha

articles/getting-started/onix-acquisition.md

@@ -32,9 +32,9 @@ Linking the data I/O operator to devices when using two identical headstages or
 miniscopes involves an additional step: renaming a configuration operator.
 Suppose you want to stream orientation data from two Neuropixels 2.0 Headstages
 through using two <xref:OpenEphys.Onix1.PolledBno055Data> operators. By default,
-the <xref:OpenEphys.Onix1.ConfigureNeuropixelsV2eHeadstage> operators are both
-named "NeuropixelsV2eHeadstage". This causes their devices to also have
-identical names, "NeuropixelsV2eHeadstage/PolledBno055". The two headstages and
+the <xref:OpenEphys.Onix1.ConfigureHeadstageNeuropixelsV2e> operators are both
+named "HeadstageNeuropixelsV2e". This causes their devices to also have
+identical names, "HeadstageNeuropixelsV2e/PolledBno055". The two headstages and
 their devices must be disambiguated. To do this, you must edit one or both of
 headstages' `Name` property:
 
@@ -46,8 +46,8 @@ After this, the disambiguated source can be selected for each data operator
 
 
 In the following workflow workflow, the `Name` property of each
-<xref:OpenEphys.Onix1.ConfigureNeuropixelsV2eHeadstage> has been changed from
-"NeuropixelsV2eHeadstage" to "HS-NPX-AB" and "HS-NPX-B". The `DeviceName` of
+<xref:OpenEphys.Onix1.ConfigureHeadstageNeuropixelsV2e> has been changed from
+"HeadstageNeuropixelsV2e" to "HS-NPX-AB" and "HS-NPX-B". The `DeviceName` of
 each of the <xref:OpenEphys.Onix1.PolledBno055Data> operators has been set to
 "HS-NPX-A/PolledBno055" and "HS-NPX-B/PolledBno055" from the dropdown so each
 operator will take data from a different headstage.

articles/hardware/np1e/bno055.md

@@ -4,6 +4,6 @@ title: NeuropixelsV1e Bno055
 bno055: true
 hardware: NeuropixelsV1e Headstage
 bnoOperator: PolledBno055Data
-hardwareOperator: NeuropixelsV1eHeadstage
+hardwareOperator: HeadstageNeuropixelsV1e
 workflowLocation: overview
 ---

articles/hardware/np1e/configuration.md

@@ -3,15 +3,15 @@ uid: np1e_configuration
 title: NeuropixelsV1e Headstage Configuration
 hardware: NeuropixelsV1e Headstage
 configuration: true
-operator: ConfigureNeuropixelsV1eHeadstage
+operator: ConfigureHeadstageNeuropixelsV1e
 dataRate: 20.6
 timeUntilFullBuffer: 400 μs
 blockReadSize: 8192
 workflowLocation: overview
 ---
 
 ## Configuring the NeuropixelsV1e Headstage
-The `NeuropixelsV1eHeadstage` operator is used to configure the Neuropixels V1e Headstage; this can enable streaming of electrophysiology data from a Neuropixels 1.0 probe and orientation data from a Bno055 IMU. This is accomplished in the example workflow by leaving all of the `NeuropixelsV1eHeadstage` properties set to their default values.
+The `HeadstageNeuropixelsV1e` operator is used to configure the Neuropixels V1e Headstage; this can enable streaming of electrophysiology data from a Neuropixels 1.0 probe and orientation data from a Bno055 IMU. This is accomplished in the example workflow by leaving all of the `HeadstageNeuropixelsV1e` properties set to their default values.
 
 Default values for the headstage are:
 - Enabling the first 384 electrodes for streaming (electrodes 0 through 383)
@@ -22,7 +22,7 @@ Default values for the headstage are:
 - Setting the `Reference` to *External*
 
 > [!IMPORTANT]
-> The workflow will not run unless gain calibration and ADC calibration files are provided. Click the `NeuropixelsV1eHeadstage` operator, expand `NeuropixelsV1e` in the properties pane, then choose the appropriate files by selecting either `GainCalibrationFile` or `AdcCalibrationFile` and clicking the <kbd>...</kbd> button.
+> The workflow will not run unless gain calibration and ADC calibration files are provided. Click the `HeadstageNeuropixelsV1e` operator, expand `NeuropixelsV1e` in the properties pane, then choose the appropriate files by selecting either `GainCalibrationFile` or `AdcCalibrationFile` and clicking the <kbd>...</kbd> button.
 
 > [!TIP]
 > For additional details on how to manually configure the headstage, such as enabling specific electrodes for recording, or modify AP / LFP gain, check out the <xref:np1e_gui> page.

articles/hardware/np1e/gui.md

@@ -8,7 +8,7 @@ The `NeuropixelsV1e` headstage has a graphical user interface when the `OpenEphy
 
 ## Overview
 
-For `NeuropixelsV1eHeadstage`, the GUI allows for an easy way to change settings and visualize the effect. From the GUI, you can:
+For `HeadstageNeuropixelsV1e`, the GUI allows for an easy way to change settings and visualize the effect. From the GUI, you can:
 
 - Configure the <xref:OpenEphys.Onix1.NeuropixelsV1ProbeConfiguration>
     - Choose the ADC calibration file
@@ -21,7 +21,7 @@ For `NeuropixelsV1eHeadstage`, the GUI allows for an easy way to change settings
 - Configure the [Bno055](xref:OpenEphys.Onix1.ConfigurePolledBno055)
     - Enable and disable the <xref:OpenEphys.Onix1.PolledBno055Data> stream
 
-The configuration dialog is accessible by double-clicking on the <xref:OpenEphys.Onix1.ConfigureNeuropixelsV1eHeadstage> operator.
+The configuration dialog is accessible by double-clicking on the <xref:OpenEphys.Onix1.ConfigureHeadstageNeuropixelsV1e> operator.
 
 ### Channel constraints
 
@@ -47,13 +47,13 @@ If the window is closed any other way (such as by pressing `Cancel`, or pressing
 
 ### ProbeInterface
 
-The `NeuropixelsV1eHeadstage` GUI uses [ProbeInterface](https://probeinterface.readthedocs.io/en/main/index.html) as the format to draw the probes and electrodes visually. For more information on ProbeInterface and the resulting JSON file, check out their [format specifications](https://probeinterface.readthedocs.io/en/main/format_spec.html) page. 
+The `HeadstageNeuropixelsV1e` GUI uses [ProbeInterface](https://probeinterface.readthedocs.io/en/main/index.html) as the format to draw the probes and electrodes visually. For more information on ProbeInterface and the resulting JSON file, check out their [format specifications](https://probeinterface.readthedocs.io/en/main/format_spec.html) page. 
 
 When opening the GUI, there is a default probe configuration that is loaded and drawn, which can be saved to a [JSON file](#save-probeinterface-file). Conversely, an existing JSON file can be [loaded](#load-probeinterface-file) to update the current channel configuration. If for any reason the default configuration is needed, it can be [loaded again](#load-default-configuration) at any time.
 
 ## Open Headstage Configuration GUI
 
-To open the headstage configuration GUI, double-click the `ConfigureNeuropixelsV1eHeadstage` operator.
+To open the headstage configuration GUI, double-click the `ConfigureHeadstageNeuropixelsV1e` operator.
 
 ![Open the GUI](../../..//images/neuropixelsv1e-gui-tut/bonsai-editor-where-to-click.png)
 

articles/hardware/np1e/np1.md

@@ -17,7 +17,7 @@ The <xref:OpenEphys.Onix1.NeuropixelsV1eData> operator generates a sequence of
   channel x 36 sample] `SpikeData` matrix, and a [384 channel x 3 sample] `LfpData` matrix. The Neuropixels 1.0 probe
   samples AP data at 30 kHz per channel (LFP data is sampled at a rate of 1/12 of the rate AP data) so this corresponds
   to 1.2 ms of data.
-- `DeviceName` is set to "NeuropixelsV1eHeadstage/NeuropixelsV1e". This links the `NeuropixelsV1eData` operator to the
+- `DeviceName` is set to "HeadstageNeuropixelsV1e/NeuropixelsV1e". This links the `NeuropixelsV1eData` operator to the
   corresponding configuration operator.
 
 Given the settings above, each frame will contain a [1 x 36 sample] `Clock` vector, a [384 channel x 36 sample]

articles/hardware/np1e/port-status.md

@@ -3,7 +3,7 @@ uid: np1e_port-status
 title: NeuropixelsV1e Headstage Port Status
 hardware: NeuropixelsV1e Headstage
 portStatus: true
-configureHardwareOperator: ConfigureNeuropixelsV1eHeadstage
-hardwareOperator: NeuropixelsV1eHeadstage
+configureHardwareOperator: ConfigureHeadstageNeuropixelsV1e
+hardwareOperator: HeadstageNeuropixelsV1e
 workflowLocation: overview
 ---

articles/hardware/np2e/bno055.md

@@ -4,6 +4,6 @@ title: NeuropixelsV2e Bno055
 bno055: true
 hardware: NeuropixelsV2e Headstage
 bnoOperator: PolledBno055Data
-hardwareOperator: NeuropixelsV2eHeadstage
+hardwareOperator: HeadstageNeuropixelsV2e
 workflowLocation: overview
 ---

articles/hardware/np2e/configuration.md

@@ -3,26 +3,26 @@ uid: np2e_configuration
 title: NeuropixelsV2e Headstage Configuration
 hardware: NeuropixelsV2e Headstage
 configuration: true
-operator: ConfigureNeuropixelsV2eHeadstage
+operator: ConfigureHeadstageNeuropixelsV2e
 dataRate: 18.1
 timeUntilFullBuffer: 440 μs
 blockReadSize: 8192
 workflowLocation: overview
 ---
 
 > [!NOTE]
-> The NeuropixelsV2eBeta Headstage functions nearly identically to the NeuropixelsV2e Headstage. Simply replace `ConfigureNeuropixelsV2eHeadstage` with `ConfigureNeuropixelsV2eBetaHeadstage`.
+> The NeuropixelsV2eBeta Headstage functions nearly identically to the NeuropixelsV2e Headstage. Simply replace `ConfigureHeadstageNeuropixelsV2e` with `ConfigureHeadstageNeuropixelsV2eBeta`.
 
 ## Configuring the NeuropixelsV2e headstage
-The `NeuropixelsV2eHeadstage` operator is set to configure the NeuropixelsV2e Headstage; this can enable streaming of electrophysiology data from a Neuropixels 2.0 probe and orientation data from a Bno055 IMU. This is accomplished in the NeuropixelsV2e Headstage example workflow by leaving all of the `NeuropixelsV2eHeadstage` properties set to their default values.
+The `HeadstageNeuropixelsV2e` operator is set to configure the NeuropixelsV2e Headstage; this can enable streaming of electrophysiology data from a Neuropixels 2.0 probe and orientation data from a Bno055 IMU. This is accomplished in the NeuropixelsV2e Headstage example workflow by leaving all of the `HeadstageNeuropixelsV2e` properties set to their default values.
 
 Default values for the headstage are:
 - Enabling the first 384 electrodes of the first shank for streaming (shank 0, electrodes 0 through 383)
     - This is also known as the **Shank 0 Bank A** `Channel Preset`
 - Setting the `Reference` to *External*
 
 > [!IMPORTANT]
-> The workflow will not run unless gain correction files are provided. Click the `NeuropixelsV2eHeadstage` operator, expand `NeuropixelsV2e` in the property pane, then choose the appropriate files by selecting either `GainCalibrationFileA` or `GainCalibrationFileB` and clicking the <kbd>...</kbd> button. If only one probe is plugged in, only one file is required.
+> The workflow will not run unless gain correction files are provided. Click the `HeadstageNeuropixelsV2e` operator, expand `NeuropixelsV2e` in the property pane, then choose the appropriate files by selecting either `GainCalibrationFileA` or `GainCalibrationFileB` and clicking the <kbd>...</kbd> button. If only one probe is plugged in, only one file is required.
 
 > [!TIP]
 > For additional details on how to manually configure the headstage, such as enabling specific electrodes for recording, or modify AP / LFP gain, check out the <xref:np2e_gui> page.

articles/hardware/np2e/gui.md

@@ -10,7 +10,7 @@ The `NeuropixelsV2e` headstage has a graphical user interface when the `OpenEphy
 
 ## Overview
 
-For `NeuropixelsV2eHeadstage`, the GUI allows for an easy way to change settings and visualize the effect. From the GUI, you can:
+For `HeadstageNeuropixelsV2e`, the GUI allows for an easy way to change settings and visualize the effect. From the GUI, you can:
 
 - Configure `Probe A` and `Probe B` independently
     - Choose the probe calibration file
@@ -47,7 +47,7 @@ If the window is closed any other way (such as by pressing `Cancel`, or pressing
 
 ### ProbeInterface
 
-The `NeuropixelsV2eHeadstage` GUI uses [ProbeInterface](https://probeinterface.readthedocs.io/en/main/index.html) as the format to draw the probes and electrodes visually. For more information on ProbeInterface and the resulting JSON file, check out their [format specifications](https://probeinterface.readthedocs.io/en/main/format_spec.html) page. 
+The `HeadstageNeuropixelsV2e` GUI uses [ProbeInterface](https://probeinterface.readthedocs.io/en/main/index.html) as the format to draw the probes and electrodes visually. For more information on ProbeInterface and the resulting JSON file, check out their [format specifications](https://probeinterface.readthedocs.io/en/main/format_spec.html) page. 
 
 When opening the GUI, there is a default probe configuration that is loaded and drawn, which can be saved to a [JSON file](#save-probeinterface-file). Conversely, an existing JSON file can be [loaded](#load-probeinterface-file) to update the current channel configuration. If for any reason the default configuration is needed, it can be [loaded again](#load-default-configuration) at any time.
 
@@ -56,7 +56,7 @@ When opening the GUI, there is a default probe configuration that is loaded and
 ![Open the GUI](../../../images/neuropixelsv2e-gui-tut/bonsai-editor-where-to-click.png)
 
 Steps to open the Probe Configuration GUI:
-- Select the `ConfigureNeuropixelsV2eHeadstage` node.
+- Select the `ConfigureHeadstageNeuropixelsV2e` node.
 - Click on the `NeuropixelsV2eProbeConfiguration` to edit (either `ProbeConfigurationA` or `ProbeConfigurationB`).
 - Select the <kbd>...</kbd> button on the right-most part of the property pane (#1 above).
 
@@ -176,7 +176,7 @@ To load the default channel configuration at any time, navigate to the File drop
 
 Step to open the headstage configuration GUI
 
-  - Double-click the `ConfigureNeuropixelsV2eHeadstage` node (#2 above)
+  - Double-click the `ConfigureHeadstageNeuropixelsV2e` node (#2 above)
 
 Once opened, if no probe calibration is selected for either `Probe A` or `Probe B`, then both tabs will only show their controls on the right and no probes (see below).
 

articles/hardware/np2e/np2.md

@@ -7,7 +7,7 @@ hardware: NeuropixelsV2e Headstage
 > [!NOTE] 
 > The NeuropixelsV2eBeta Headstage functions nearly identically to the NeuropixelsV2e Headstage. Simply replace
 > `NeuropixelsV2eData` with `NeuropixelsV2eBetaData` and set its `DeviceName` property to
-> "NeuropixelsV2eBetaHeadstage/NeuropixelsV2eBeta". 
+> "HeadstageNeuropixelsV2eBeta/NeuropixelsV2eBeta". 
 
 The following excerpt from the NeuropixelsV2e Headstage [example workflow](xref:np2e) demonstrates Neuropixels 2.0 probe
 functionality by streaming data and saves Neuropixels 2.0 probe data. The second chain is disabled by default, assuming
@@ -24,7 +24,7 @@ The <xref:OpenEphys.Onix1.NeuropixelsV2eData> operator generates a sequence of
 - `BufferSize` is set to 30. Therefore, each frame will contain a [1 x 30 sample] `Clock` vector and a [384 channel x 30
   sample] `AmplifierData` matrix. The Neuropixels 2.0 probe samples at 30 kHz per channel so this corresponds to 1 ms of
   data.
-- `DeviceName` is set to "NeuropixelsV2eHeadstage/NeuropixelsV2e". This links the `NeuropixelsV2eData` operator to the
+- `DeviceName` is set to "HeadstageNeuropixelsV2e/NeuropixelsV2e". This links the `NeuropixelsV2eData` operator to the
   corresponding configuration operator. 
 - `ProbeIndex` is set to "ProbeA". This links the data generated by this probe to the probe in port A of the headstage. 
 

articles/hardware/np2e/port-status.md

@@ -3,10 +3,10 @@ uid: np2e_port-status
 title: NeuropixelsV2e Headstage Port Status
 hardware: NeuropixelsV2e Headstage
 portStatus: true
-configureHardwareOperator: ConfigureNeuropixelsV2eHeadstage
-hardwareOperator: NeuropixelsV2eHeadstage
+configureHardwareOperator: ConfigureHeadstageNeuropixelsV2e
+hardwareOperator: HeadstageNeuropixelsV2e
 workflowLocation: overview
 ---
 
 > [!NOTE]
-> The NeuropixelsV2eBeta Headstage functions nearly identically to the NeuropixelsV2e Headstage in Bonsai. Simply set `PortStatus`'s `DeviceName` property to "NeuropixelsV2eBetaHeadstage/PortController".
+> The NeuropixelsV2eBeta Headstage functions nearly identically to the NeuropixelsV2e Headstage in Bonsai. Simply set `PortStatus`'s `DeviceName` property to "HeadstageNeuropixelsV2eBeta/PortController".

articles/tutorials/ephys-socket.md

@@ -76,11 +76,11 @@ Construct an ONIX [hardware configuration chain](xref:onix-configuration):
 1.  Place the [configuration operators](xref:configure) that correspond to the
     hardware you intend to use between <xref:OpenEphys.Onix1.CreateContext> and
     <xref:OpenEphys.Onix1.StartAcquisition>. In this example, these are
-    <xref:OpenEphys.Onix1.ConfigureNeuropixelsV1eHeadstage> and
+    <xref:OpenEphys.Onix1.ConfigureHeadstageNeuropixelsV1e> and
     <xref:OpenEphys.Onix1.ConfigureBreakoutBoard>.
 1.  Confirm that the device that streams electrophysiology data is enabled. In
     this example, we will stream data from the NeuropixelsV1e device which can
-    be found in the properties panel by clicking the NeuropixelsV1eHeadstage
+    be found in the properties panel by clicking the HeadstageNeuropixelsV1e
     node.
 1.  In the case of NeuropixelsV1e Headstage, you must provide gain and
     calibration files and can perform other configurations as explained in the

src/bonsai-onix1

@@ -77,10 +77,10 @@
         </Combinator>
       </Expression>
       <Expression xsi:type="Combinator">
-        <Combinator xsi:type="onix1:ConfigureNeuropixelsV2eHeadstage">
-          <onix1:Name>NeuropixelsV2eHeadstage</onix1:Name>
+        <Combinator xsi:type="onix1:ConfigureHeadstageNeuropixelsV2e">
+          <onix1:Name>HeadstageNeuropixelsV2e</onix1:Name>
           <onix1:NeuropixelsV2e>
-            <onix1:DeviceName>NeuropixelsV2eHeadstage/NeuropixelsV2e</onix1:DeviceName>
+            <onix1:DeviceName>HeadstageNeuropixelsV2e/NeuropixelsV2e</onix1:DeviceName>
             <onix1:DeviceAddress>256</onix1:DeviceAddress>
             <onix1:Enable>true</onix1:Enable>
             <onix1:ProbeConfigurationA>
@@ -95,7 +95,7 @@
             </onix1:ProbeConfigurationB>
           </onix1:NeuropixelsV2e>
           <onix1:Bno055>
-            <onix1:DeviceName>NeuropixelsV2eHeadstage/PolledBno055</onix1:DeviceName>
+            <onix1:DeviceName>HeadstageNeuropixelsV2e/PolledBno055</onix1:DeviceName>
             <onix1:DeviceAddress>257</onix1:DeviceAddress>
             <onix1:Enable>true</onix1:Enable>
             <onix1:AxisMap>ZXY</onix1:AxisMap>

workflows/getting-started/configure.bonsai

@@ -77,7 +77,7 @@
         </Combinator>
       </Expression>
       <Expression xsi:type="Combinator">
-        <Combinator xsi:type="onix1:ConfigureNeuropixelsV2eHeadstage">
+        <Combinator xsi:type="onix1:ConfigureHeadstageNeuropixelsV2e">
           <onix1:Name>HS-NPX-A</onix1:Name>
           <onix1:NeuropixelsV2e>
             <onix1:DeviceName>HS-NPX-A/NeuropixelsV2e</onix1:DeviceName>
@@ -106,7 +106,7 @@
         </Combinator>
       </Expression>
       <Expression xsi:type="Combinator">
-        <Combinator xsi:type="onix1:ConfigureNeuropixelsV2eHeadstage">
+        <Combinator xsi:type="onix1:ConfigureHeadstageNeuropixelsV2e">
           <onix1:Name>HS-NPX-B</onix1:Name>
           <onix1:NeuropixelsV2e>
             <onix1:DeviceName>HS-NPX-B/NeuropixelsV2e</onix1:DeviceName>

workflows/getting-started/polled-bno055-data-alias.bonsai

@@ -77,10 +77,10 @@
         </Combinator>
       </Expression>
       <Expression xsi:type="Combinator">
-        <Combinator xsi:type="onix1:ConfigureNeuropixelsV2eHeadstage">
-          <onix1:Name>NeuropixelsV2eHeadstage</onix1:Name>
+        <Combinator xsi:type="onix1:ConfigureHeadstageNeuropixelsV2e">
+          <onix1:Name>HeadstageNeuropixelsV2e</onix1:Name>
           <onix1:NeuropixelsV2e>
-            <onix1:DeviceName>NeuropixelsV2eHeadstage/NeuropixelsV2e</onix1:DeviceName>
+            <onix1:DeviceName>HeadstageNeuropixelsV2e/NeuropixelsV2e</onix1:DeviceName>
             <onix1:DeviceAddress>256</onix1:DeviceAddress>
             <onix1:Enable>true</onix1:Enable>
             <onix1:ProbeConfigurationA>
@@ -95,7 +95,7 @@
             </onix1:ProbeConfigurationB>
           </onix1:NeuropixelsV2e>
           <onix1:Bno055>
-            <onix1:DeviceName>NeuropixelsV2eHeadstage/PolledBno055</onix1:DeviceName>
+            <onix1:DeviceName>HeadstageNeuropixelsV2e/PolledBno055</onix1:DeviceName>
             <onix1:DeviceAddress>257</onix1:DeviceAddress>
             <onix1:Enable>true</onix1:Enable>
             <onix1:AxisMap>YZX</onix1:AxisMap>
@@ -113,7 +113,7 @@
       </Expression>
       <Expression xsi:type="Combinator">
         <Combinator xsi:type="onix1:PolledBno055Data">
-          <onix1:DeviceName>NeuropixelsV2eHeadstage/PolledBno055</onix1:DeviceName>
+          <onix1:DeviceName>HeadstageNeuropixelsV2e/PolledBno055</onix1:DeviceName>
           <onix1:PolledRegisters>All</onix1:PolledRegisters>
         </Combinator>
       </Expression>