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1 parent 3e4d16b commit 32a5ecfCopy full SHA for 32a5ecf
cellbase-lib/src/main/java/org/opencb/cellbase/lib/variant/annotation/VariantAnnotationCalculator.java
@@ -611,9 +611,9 @@ private List<VariantAnnotation> runAnnotationProcess(List<Variant> normalizedVar
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}
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} catch (Exception e) {
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- e.printStackTrace();
+ variantAnnotation.setDisplayConsequenceType(VariantAnnotationUtils.FUNCTION_UNCERTAIN_VARIANT);
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+ variantAnnotation.setConsequenceTypes(Collections.emptyList());
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logger.error("Something wrong happened when calculation consequence type for variant " + variant, e);
- throw e;
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