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    17 repositories

    • flair

      Public
      Full-Length Alternative Isoform analysis of RNA
      Python
      •
      Other
      •74•220•102•0•Updated Mar 7, 2025Mar 7, 2025

    • flair-test-suite

      Public
      Test suite for FLAIR
      Other
      •0•0•0•0•Updated Mar 5, 2025Mar 5, 2025

    • splicedice

      Public
      A tool for detecting and quantifying alternative splicing with RNA-seq
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•2•4•2•Updated Dec 9, 2024Dec 9, 2024

    • NEMO

      Public
      a deep neural network model for mapping modifications in nanopore Long-read sequencing data
      Python
      •
      MIT License
      •1•0•0•0•Updated Mar 8, 2024Mar 8, 2024

    • addseq_manuscript

      Public
      Chromatin accessibility profiling with small molecule intercalation and long-read sequencing
      Jupyter Notebook
      •1•0•0•0•Updated Mar 7, 2024Mar 7, 2024

    • FLAIR-fusion

      Public
      Python
      •2•0•0•0•Updated Aug 15, 2023Aug 15, 2023

    • cawlr-rs

      Public
      Tool to analyze chromatin accessibility with long read sequencing technologies
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Jul 26, 2023Jul 26, 2023

    • FLAIR-fusion-v2

      Public
      New version of long-read fusion isoform detection
      Python
      •
      MIT License
      •1•0•0•0•Updated Jul 24, 2023Jul 24, 2023

    • DM-DASE

      Public
      A workflow for the discovery and analysis of novel splicing events in cancer
      R
      •1•0•0•0•Updated May 29, 2023May 29, 2023

    • eVIP2

      Public
      Expression-based variant impact phenotyping
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •4•5•0•0•Updated Jul 19, 2022Jul 19, 2022

    • RNA-VaCay

      Public
      Wrapper and analysis scripts for RNA variant calling pipeline
      R
      •2•3•1•0•Updated Jun 30, 2019Jun 30, 2019

    • sys-admin

      Public
      Scripts for backing up data
      0•0•0•0•Updated Mar 22, 2019Mar 22, 2019

    • juncBASE

      Public
      Junction Based Analysis of Splicing Events for RNA-Seq
      Python
      •17•0•0•0•Updated Aug 18, 2018Aug 18, 2018

    • labtools

      Public
      Small standalone scripts
      Python
      •2•9•0•0•Updated May 15, 2018May 15, 2018

    • dockerfiles

      Public
      Python
      •0•0•0•0•Updated Feb 7, 2017Feb 7, 2017

    • JuncBASEDev

      Public
      Python
      •0•0•0•0•Updated Sep 22, 2016Sep 22, 2016

    • fastqc

      Public
      Dockerfile and wrapper script for FASTQC
      Shell
      •0•0•0•0•Updated May 17, 2016May 17, 2016