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@SynBioDex Synthetic Biology Data Exchange Group

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    58 repositories

    • libSBOLj3

      Public
      A Java library for the Synthetic Biology Open Language version 3
      Java
      •
      Apache License 2.0
      •3•2•5•0•Updated Nov 21, 2025Nov 21, 2025

    • SBOLCanvas

      Public
      HTML
      •
      Apache License 2.0
      •7•14•34•0•Updated Nov 14, 2025Nov 14, 2025

    • SBOL-Converter

      Public
      SBOL Java Converter
      Java
      •
      Apache License 2.0
      •0•2•8•1•Updated Nov 7, 2025Nov 7, 2025

    • SBOL-Notebooks

      Public
      A repository containing Jupyter Notebooks for SBOL
      Jupyter Notebook
      •1•0•16•5•Updated Nov 5, 2025Nov 5, 2025

    • SBOL-utilities

      Public
      Command-line utilities and scripts for manipulating SBOL data
      JavaScript
      •
      MIT License
      •29•19•107•15•Updated Oct 26, 2025Oct 26, 2025

    • SBOLTestSuite

      Public
      Java
      •10•8•9•2•Updated Oct 21, 2025Oct 21, 2025

    • test-github-deploy

      Public
      Maven deployment test - Please ignore this project.
      Java
      •1•0•0•0•Updated Oct 16, 2025Oct 16, 2025

    • SeqTrainer

      Public
      ML training on SBOL data
      Jupyter Notebook
      •
      MIT License
      •0•1•2•0•Updated Sep 26, 2025Sep 26, 2025

    • SbolStandardWebsite

      Public
      TeX
      •
      Creative Commons Zero v1.0 Universal
      •3•4•15•0•Updated Sep 3, 2025Sep 3, 2025

    • Excel-to-SBOL

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •8•4•22•0•Updated Aug 21, 2025Aug 21, 2025

    • Community-Media

      Public
      This repository is intended to be a "one stop" location for finding all of the publicly presented papers, posters, and talks that have been given on SBOL.
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •13•9•3•0•Updated Aug 6, 2025Aug 6, 2025

    • libSBOLj

      Public
      Java Library for Synthetic Biology Open Language (SBOL)
      Java
      •
      Apache License 2.0
      •25•40•64•8•Updated Jul 12, 2025Jul 12, 2025

    • SBOL-Validator

      Public
      A web application to validate SBOL files
      pythonflasksynthetic-biologystandardssbol
      HTML
      •
      Apache License 2.0
      •3•9•16•4•Updated Jun 18, 2025Jun 18, 2025

    • tyto

      Public
      Use ontology terms in your Python application
      Python
      •
      Apache License 2.0
      •4•20•21•0•Updated Jun 6, 2025Jun 6, 2025

    • SBOL-examples

      Public
      A repository to share/discuss/ask/propose how to represent examples using SBOL and SBOLVisual.
      Jupyter Notebook
      •
      Apache License 2.0
      •4•3•17•1•Updated May 7, 2025May 7, 2025

    • Xperimental-Data-Connector

      Public
      XDC uses excel2flapjack and excel2sbol and interlinks the data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •8•2•6•1•Updated Apr 16, 2025Apr 16, 2025

    • Excel-utilities

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•4•0•Updated Apr 2, 2025Apr 2, 2025

    • pySBOL3

      Public
      Native python implementation of SBOL 3.0 specification
      Python
      •
      MIT License
      •17•42•45•2•Updated Mar 26, 2025Mar 26, 2025

    • sbol_factory

      Public
      The SBOLFactory provides a mechanism for automatically generating an interactive, object-oriented API from a declarative data model specification encoded in OWL.
      Python
      •
      MIT License
      •2•6•16•1•Updated Feb 26, 2025Feb 26, 2025

    • pySBOL2

      Public
      A pure Python implementation of the SBOL standard.
      Python
      •
      Apache License 2.0
      •8•22•29•1•Updated Feb 13, 2025Feb 13, 2025

    • SBOLExplorer

      Public
      synthetic-biology
      UnrealScript
      •
      MIT License
      •2•4•25•7•Updated Nov 13, 2024Nov 13, 2024

    • Xperimental-Data-Connector-Server

      Public
      This runs a submission to flapjack and synbiohub from an excel file
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•3•2•Updated Oct 24, 2024Oct 24, 2024

    • SBOL-Devs

      Public
      SBOL Devs repository, a place to plan the software development that SBOL needs.
      MIT License
      •0•1•0•0•Updated Aug 8, 2024Aug 8, 2024

    • Excel-to-Flapjack

      Public
      Jupyter Notebook
      •1•0•0•1•Updated Apr 26, 2024Apr 26, 2024

    • hugo-blox-builder

      Public
      Hugo Academic - Theme
      HTML
      •
      MIT License
      •3k•0•0•0•Updated Mar 19, 2024Mar 19, 2024

    • sboljs3

      Public
      A library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/TypeScript applications in the browser or node.js
      bioinformaticsbiologysbolsynbio
      TypeScript
      •1•6•16•0•Updated Jul 3, 2023Jul 3, 2023

    • SEPs

      Public
      SBOL Enhancement Proposals
      Python
      •17•11•5•0•Updated May 5, 2023May 5, 2023

    • SBOL-specification

      Public
      The Synthetic Biology Open Language (SBOL)
      TeX
      •9•22•16•0•Updated Apr 25, 2023Apr 25, 2023

    • SBOL-visual

      Public
      The reference implementation of the SBOL Visual standard
      HTML
      •
      Other
      •17•37•26•0•Updated Mar 20, 2023Mar 20, 2023

    • .github

      Public
      1•0•0•0•Updated Jan 25, 2023Jan 25, 2023