Repositories list

• SplineOmics

  Public
  Timeseries analysis of -omics data can be carried out by fitting spline curves to the data and using limma for hypothesis testing. The obtained hits can be clustered based on the spline shape and then used for an over-representation (ORA) analysis.The R package SplineOmics streamlines this whole process and generates reports.

  timeseriesclustersplines+ 2omicslimma

  R

  •

  Other

  •0•7•0•0•Updated Jan 26, 2026Jan 26, 2026

• DGTX_feeding_strategies_nistcho

  Public
  Analysis code for the NISTCHO bioprocess data and cNISTmAb critical quality attributes

  R

  •

  MIT License

  •0•0•0•0•Updated Jan 24, 2026Jan 24, 2026

• CultShift

  Public
  Follow up on TFCF

  R

  •0•0•0•0•Updated Jan 20, 2026Jan 20, 2026

• SplineOmics_assets

  Public
  Stores the HTML reports that are the output of the functions of the SplineOmics package, so that they can be linked in the documentation of the actual SplineOmics package, without placing those big files there.

  HTML

  •0•0•0•0•Updated Jan 19, 2026Jan 19, 2026

• ML_in_omics

  Public
  Elective module for teaching AI/ML in omics analysis

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 15, 2026Jan 15, 2026

• fibroblast-perturb-seq-analysis

  Public
  Epigenetic regulators of fibrotic transformation in cardiac fibroblasts

  scrna-seqscatac-seqfibroblasts+ 2perturb-seqcardiac-fibrosis

  Jupyter Notebook

  •

  MIT License

  •0•2•0•0•Updated Jan 14, 2026Jan 14, 2026

• Hands-on-Biomedical-Data

  Public
  Practical exercises for the course "Hands-on Biomedical Data - Resources and Analysis Tools"

  0•0•0•0•Updated Nov 26, 2025Nov 26, 2025

• tfcf

  Public
  Systematic functional screening of chromatin factors identifies strong lineage and disease dependencies in normal and malignant haematopoiesis.

  R

  •1•6•1•0•Updated Oct 16, 2025Oct 16, 2025

• BioinformaticsPracticals1

  Public
  Student resources for UE Bioinformatische Übungen I

  pythonbash

  CSS

  •0•0•0•0•Updated Sep 2, 2025Sep 2, 2025

• imputeeval

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• ATACSeq_Scripts_Eosinophil_Skin_Lung_Crosstalk

  Public
  R scripts for ATAC-seq analysis of eosinophil chromatin accessibility in allergic skin-lung crosstalk research.

  R

  •0•0•0•0•Updated Jan 20, 2025Jan 20, 2025

• neuroblastoma

  Public
  Single-cell transcriptomics and epigenomics unravel the role of monocytes in neuroblastoma bone marrow metastasis

  scrna-seqsingle-cellheterogeneity+ 6metastasisscatac-seqbone-marrowneuroblastomamonocytesmicroenvironment

  Jupyter Notebook

  •

  MIT License

  •1•11•0•0•Updated Dec 11, 2023Dec 11, 2023

• pnet_robustness

  Public
  Reliable interpretability of biology-inspired deep neural networks

  deep-learningneural-networksnetwork-analysis+ 1interpretability

  R

  •

  MIT License

  •1•3•0•0•Updated Oct 11, 2023Oct 11, 2023

• Allergy_clinical_trial

  Public
  HTML

  •0•0•0•0•Updated Apr 20, 2023Apr 20, 2023