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    21 repositories

    • precisecaller

      Public
      A complete, scalable, easy-to-use, open-source platform for genomic variant detection in Oncology and Precision Medicine
      Nextflow
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 18, 2025Feb 18, 2025

    • blog

      Public
      Blog de divulgação científica do laboratório dos Galantes
      scienceblog
      SCSS
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 17, 2025Feb 17, 2025

    • reboot

      Public template
      Regression and survival tool with a multivariate bootstrap approach
      R
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Feb 17, 2025Feb 17, 2025

    • sideRETRO

      Public
      A pipeline for detecting Somatic Insertion of DE novo RETROcopies
      next-generation-sequencingwgscnvwesgenotyperetrocopypseudogenesmobile-elementspolimorphism
      C
      •
      GNU General Public License v3.0
      •5•9•1•0•Updated Nov 21, 2024Nov 21, 2024

    • fredy

      Public
      Tool to identify chimeric events from RNA-Seq data
      rna-seqrna-seq-analysisrna-seq-pipelinechimeric
      Shell
      •
      GNU General Public License v3.0
      •0•4•0•0•Updated Nov 20, 2024Nov 20, 2024

    • sider-aws

      Public
      Run sider pipeline on AWS
      Makefile
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 10, 2024Aug 10, 2024

    • sider-pipeline

      Public
      A massive pipeline on AWS for retroCNVs discovery
      Perl
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 2, 2024Apr 2, 2024

    • nomaR

      Public
      C
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 28, 2024Mar 28, 2024

    • sandy

      Public
      A straightforward and complete next-generation sequencing read simulator
      nanoporegenomicssimulationnext-generation-sequencingpacbiotranscriptomicsilluminastructural-variation
      Perl
      •
      Other
      •3•21•11•1•Updated Feb 18, 2024Feb 18, 2024

    • siderdb

      Public
      a database for polymorphic retrocopies in human populations
      Perl
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 28, 2023Oct 28, 2023

    • sandy-uppercase

      Public
      HTML
      •0•0•0•0•Updated Aug 28, 2023Aug 28, 2023

    • galante-make

      Public
      Bash wrapper for GNU/Make
      Shell
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Jul 26, 2023Jul 26, 2023

    • MAGOHMAGOHB

      Public
      Collection of scripts used in "The paralogues MAGOH and MAGOHB are oncogenic factors in high grade gliomas and safeguard the splicing of cell division and cell cycle genes."
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 16, 2022Dec 16, 2022

    • graphics-compilation

      Public
      A compilation of useful graphics for Bioinformatics tasks in R an Perl.
      Perl
      •2•1•0•0•Updated Jul 30, 2020Jul 30, 2020

    • guardia_etal-GSCs

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 9, 2019Sep 9, 2019

    • bwa

      Public
      BWA (libbwa) static build meant for Meson subprojects
      Meson
      •
      MIT License
      •0•0•0•0•Updated Sep 8, 2019Sep 8, 2019

    • htslib

      Public
      HTSLib static build meant for Meson subprojects
      Meson
      •
      MIT License
      •0•0•0•0•Updated Sep 7, 2019Sep 7, 2019

    • zlib

      Public
      zlib static build meant for Meson subprojects
      Meson
      •
      MIT License
      •0•0•0•0•Updated Sep 7, 2019Sep 7, 2019

    • sqlite-amalgamation

      Public
      SQLite static build meant for Meson subprojects
      Meson
      •
      MIT License
      •0•0•0•0•Updated Sep 7, 2019Sep 7, 2019

    • gsia

      Public
      A third-world gene set impoverishment analysis
      C
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 21, 2019Mar 21, 2019

    • tipseq_hunter

      Public
      Dockerfile for TIPseqHunter pipeline
      Shell
      •1•2•0•0•Updated Oct 16, 2018Oct 16, 2018