Harvard Medical School - Department of Biomedical Informatics

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362 repositories

pic-sure-bdc-release-control
Public
Apache License 2.0
•8•1•0•0•Updated Feb 7, 2025Feb 7, 2025
biodata_catalyst_stigmatizing_variables
Public
Jupyter Notebook
•
Apache License 2.0
•0•1•0•1•Updated Feb 7, 2025Feb 7, 2025
picsure-dictionary-etl
Public
Java
•
Apache License 2.0
•0•0•0•0•Updated Feb 7, 2025Feb 7, 2025
pic-sure-auth-microapp
Public
Java
•
Apache License 2.0
•5•4•0•2•Updated Feb 7, 2025Feb 7, 2025
pic-sure-gic-institution-release-control
Public
Apache License 2.0
•0•0•0•0•Updated Feb 7, 2025Feb 7, 2025
PIC-SURE-Metrics
Public
A Spring Boot PIC-SURE resource for logging user or service interactions for required metrics.
Java
•
Apache License 2.0
•0•0•0•0•Updated Feb 7, 2025Feb 7, 2025
i2b2v2-webclient
Public
JavaScript
•4•2•1•0•Updated Feb 7, 2025Feb 7, 2025
pic-sure-all-in-one
Public
Shell
•
Apache License 2.0
•12•4•0•2•Updated Feb 7, 2025Feb 7, 2025
cellpop
Public
Jupyter Notebook
•
MIT License
•1•0•11•2•Updated Feb 6, 2025Feb 6, 2025
PIC-SURE-Migrations
Public
Database migrations for the PIC-SURE All-in-One.
Apache License 2.0
•0•0•0•0•Updated Feb 6, 2025Feb 6, 2025
pic-sure-metadata-curation
Public
Parse and generate variable-level data to be exposed through the search interface.
SAS
•
Apache License 2.0
•2•2•0•0•Updated Feb 5, 2025Feb 5, 2025
PIC-SURE-Frontend
Public
A frontend for the PIC-SURE API
TypeScript
•
Apache License 2.0
•0•1•0•10•Updated Feb 5, 2025Feb 5, 2025
picsure-dictionary
Public
Java
•
Apache License 2.0
•1•0•0•0•Updated Feb 5, 2025Feb 5, 2025
ETL-MissionControl-dbgap-submodule
Public
ETL-MissionControl-dbgap-submodule
Python
•
Apache License 2.0
•0•0•0•0•Updated Feb 5, 2025Feb 5, 2025
pic-sure-baseline-release-control
Public
5•0•0•0•Updated Feb 5, 2025Feb 5, 2025
Access-to-Data-and-Compute-using-Service-Workbench
Public
Repository for Service Workbench example notebooks
Jupyter Notebook
•
Apache License 2.0
•2•0•0•0•Updated Feb 4, 2025Feb 4, 2025
pic-sure-hpds
Public
Java
•
Apache License 2.0
•6•3•0•6•Updated Feb 4, 2025Feb 4, 2025
avillachlab-jenkins
Public
HCL
•
Apache License 2.0
•6•5•0•0•Updated Feb 3, 2025Feb 3, 2025
hypatio-app
Public
Python
•0•4•0•9•Updated Feb 3, 2025Feb 3, 2025
dbmi-fileservice
Public
Python
•0•2•0•5•Updated Feb 3, 2025Feb 3, 2025
fhirquestionnaire
Public
HTML
•0•2•0•5•Updated Feb 3, 2025Feb 3, 2025
dbmisvc-starter
Public
Python
•0•1•0•4•Updated Feb 3, 2025Feb 3, 2025
actions
Public
0•0•0•44•Updated Feb 3, 2025Feb 3, 2025
viv
Public
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
imaging ome-tiff openmicroscopy gehlenborglab zarr hubmap viv
JavaScript
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MIT License
•47•295•45•11•Updated Feb 1, 2025Feb 1, 2025
pic-sure-public-datasets
Public
Public datasets available for PIC-SURE
Apache License 2.0
•0•0•0•0•Updated Feb 1, 2025Feb 1, 2025
vizarr
Public
A minimal Zarr image viewer based on Viv.
jupyter-notebooks gehlenborglab zarr viv imjoy
TypeScript
•
MIT License
•18•134•19•11•Updated Feb 1, 2025Feb 1, 2025
pic-sure
Public
PIC-SURE API
Java
•
Apache License 2.0
•3•5•0•6•Updated Jan 31, 2025Jan 31, 2025
pic-sure-frontend-harness
Public
Shell
•0•0•0•0•Updated Jan 31, 2025Jan 31, 2025
gehlenborglab-website
Public
Code for Gehlenborg Lab website.
website gehlenborglab hidivelab
TypeScript
•
MIT License
•38•8•21•22•Updated Jan 31, 2025Jan 31, 2025
chromoscope
Public
Interactive multiscale visualization for structural variation in human genomes
TypeScript
•
MIT License
•7•67•34•2•Updated Jan 30, 2025Jan 30, 2025