Repositories list

• variant-aware-cas-offinder

  Public
  Python

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Mar 14, 2025Mar 14, 2025

• VarCas-OFFinder

  Public
  Python

  •

  GNU Affero General Public License v3.0

  •0•0•0•0•Updated Mar 14, 2025Mar 14, 2025

• rgen-toolkit

  Public
  Python

  •

  Other

  •0•0•0•0•Updated Mar 12, 2025Mar 12, 2025

• BIML-2025

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Feb 27, 2025Feb 27, 2025

• ssam

  Public
  SSAM (Spot-based Spatial cell-type Analysis by Multidimensional mRNA density estimation)

  Python

  •

  Other

  •0•0•0•0•Updated Oct 19, 2024Oct 19, 2024

• SSAM-SpatialData

  Public
  Jupyter Notebook

  •0•1•0•0•Updated Sep 9, 2024Sep 9, 2024

• pyoncoprint

  Public
  Python OncoPrint library based on Matplotlib

  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •6•22•3•0•Updated Aug 27, 2024Aug 27, 2024

• freebayes-docker

  Public
  Dockerfile

  •

  MIT License

  •1•0•0•0•Updated Jul 17, 2024Jul 17, 2024

• readretro-website

  Public
  READRetro website

  Svelte

  •

  Other

  •2•1•0•0•Updated Jun 5, 2024Jun 5, 2024

• ssam-google-colab

  Public
  A temporary fix for google colab - soon removed

  Python

  •

  Other

  •11•0•0•0•Updated Apr 18, 2024Apr 18, 2024

• bohun_interface

  Public
  Svelte

  •0•0•0•0•Updated Apr 7, 2024Apr 7, 2024

• cas-offinder-rust

  Public
  Testing at the moment, not working yet

  Rust

  •

  GNU Affero General Public License v3.0

  •1•0•1•0•Updated Mar 15, 2024Mar 15, 2024

• pnucolab.github.io

  Public
  JavaScript

  •

  MIT License

  •0•0•0•7•Updated Jan 18, 2024Jan 18, 2024

• MITObim

  Public
  MITObim fork for rootless docker

  Perl

  •

  MIT License

  •34•0•0•0•Updated Aug 8, 2023Aug 8, 2023

• cas-database-pipeline

  Public
  A pipeline to find off-targets to build a new Cas-Database

  Python

  •0•0•0•0•Updated Apr 23, 2023Apr 23, 2023

• pyrsfish

  Public
  python reimplementation of rsfish

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Apr 1, 2023Apr 1, 2023

• git-tutorial

  Public
  git tutorial @ pnucolab 2022

  BSD 3-Clause "New" or "Revised" License

  •5•0•0•0•Updated Nov 9, 2022Nov 9, 2022

• kr-to-eng-translation-bot

  Public
  for Zulip!

  Python

  •1•0•0•0•Updated Oct 15, 2022Oct 15, 2022

• Spadoma

  Public
  Spatial Domain analysis(Spadoma)

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Oct 14, 2022Oct 14, 2022

• cas-offinder-2

  Public
  An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.

  C++

  •

  Other

  •27•0•0•0•Updated Aug 31, 2022Aug 31, 2022

• powerlevel10k

  Public
  zsh customization (p10k configure) Error removed

  Shell

  •

  MIT License

  •2.3k•0•0•0•Updated Jul 28, 2022Jul 28, 2022

• cas-analyzer_py

  Public
  BSD 2-Clause "Simplified" License

  •0•0•0•0•Updated Jul 25, 2022Jul 25, 2022

• cas-analyzer

  Public
  Full JavaScript-based assessment tool for targeted sequencing data of genome-edited samples.

  CoffeeScript

  •

  Other

  •4•0•0•0•Updated Nov 8, 2016Nov 8, 2016