From 047c196c0183ec58b607557633c449604529d2c3 Mon Sep 17 00:00:00 2001 From: "Laura Luebbert, Ph.D." <56094636+lauraluebbert@users.noreply.github.com> Date: Thu, 6 Feb 2025 18:29:24 -0500 Subject: [PATCH] add some to-dos --- gget/gget_ncbi_virus.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/gget/gget_ncbi_virus.py b/gget/gget_ncbi_virus.py index ed7d931d..cee80efe 100644 --- a/gget/gget_ncbi_virus.py +++ b/gget/gget_ncbi_virus.py @@ -12,7 +12,7 @@ from datetime import datetime from dateutil import parser -# !!! REMOVE BIOPYTHON DEPENDENCY +# !!! TO-DO: REMOVE BIOPYTHON DEPENDENCY from Bio import SeqIO from .utils import set_up_logger @@ -158,6 +158,7 @@ def parse_date(date_str): return None +# !!! TO-DO: Find ways to filter pre-download so you don't have to download a ton of seqs just to filter after def filter_sequences( fna_file, metadata_dict,