_pkgdown.yml

url: https://pharmaverse.github.io/admiraltemplate

template:
  bootstrap: 5
  params:
    bootswatch: flatly
  light-switch: true
  bslib:
    preset: "flatly"
    primary: "#2c3e50"
    navbar-bg: "#2c3e50"
  includes:
    css: pkgdown/extra.css
    in_header: |
      <script
      async
      src="https://widget.kapa.ai/kapa-widget.bundle.js"
      data-website-id="2c7249cc-f1dc-4a63-8674-6ecbcb34d95c"
      data-project-name="admiral"
      data-project-color="#2c3e50"
      data-project-logo="https://pharmaverse.github.io/admiraltemplate/logo.png"
      data-consent-required="true"
      data-user-analytics-cookie-enabled="true"
      data-consent-screen-title="Help us improve our AI assistant"
      data-consent-screen-disclaimer="By clicking 'Allow tracking', you consent to anonymous user tracking which helps us improve our service. We don't collect any personally identifiable information."
      data-consent-screen-accept-button-text="Allow tracking"
      data-consent-screen-reject-button-text="No, thanks"
      data-modal-example-questions="Tell me a little about the {admiraltemplate} package., What are some important {admiraltemplate} functions and what do they do?"
      data-modal-search-placeholder="Ask me a question about {admiraltemplate} or the {admiral} ecosystem..."
      data-modal-z-index="9999"
      ></script>

      <script>
      document.addEventListener("DOMContentLoaded", function () {
        // Select all navbar links that have an aria-label
        var navLinks = document.querySelectorAll('.navbar-nav .nav-link[aria-label]');

        navLinks.forEach(function (link) {
          // Initialize Bootstrap 5 Tooltip
          link.setAttribute('title', link.getAttribute('aria-label'));
          new bootstrap.Tooltip(link, {
            placement: 'bottom', // Tooltip appears below the icon
            trigger: 'hover'
          });
        });
      });
      </script>

repo:
  url:
    home: https://github.com/pharmaverse/admiraltemplate
    source: https://github.com/pharmaverse/admiraltemplate/blob/main/
    issue: https://github.com/pharmaverse/admiraltemplate/issues/
    user: https://github.com/
news:
  cran_dates: true

home:
  links:
  - text: 🌍 {admiral} ecosystem 🌍
    href: https://pharmaverse.org/e2eclinical/adam/
  - text: 🧭 ADaM templates 🧭
    href: articles/templates.html

authors:
  footer:
    roles: [aut, ctb, cre]
    text: "Developed by License-holding Companies,"
  sidebar:
    roles: [aut, fnd]
  Company:
    html: "<a href='https://en.wikipedia.org/wiki/Open_source'><img src='man/figures/open_source_logo.png' height='34' alt='Open Source logo' /></a>"
    href: https://roche.com/

development:
  mode: auto

reference:

- title: Derivations for Adding Variables
- subtitle: ADXX-specific
  desc: Derivation Functions helpful for building the ADXX dataset
- contents:
  - has_keyword("der_adxx")

- title: Derivations for Adding Parameters
- subtitle: ADXX-specific
  desc: Parameter Derivation Functions helpful for building the ADXX dataset
- contents:
  - has_keyword("der_prm_adxx")

- title: Advanced Functions
- subtitle: Pre-Defined Source Objects
  desc: Source objects defined by {admiraltemplate}
- contents:
  - has_keyword("source_specifications")

- title: Utility Functions
- subtitle: Utilities for Formatting Observations
- contents:
  - has_keyword('utils_fmt')

- subtitle: Utilities for Dataset Checking
- contents:
  - has_keyword('utils_ds_chk')

- subtitle: Utilities for Filtering Observations
- contents:
  - has_keyword('utils_fil')

- title: Example Datasets
  desc: You can run `admiral::use_ad_template()` to produce additional datasets
- contents:
  - has_keyword('datasets')

navbar:
  structure:
    left: [getstarted, reference, articles, news]
    right: [search, slack, history, newissue, github, lightswitch]
  components:
    getstarted:
      text: Get Started
      menu:
      - text: Get Started
        href: articles/admiral.html
      - text: Explore ADaM Templates 🧭
        href: articles/templates.html
    reference:
      text: Reference
      href: reference/index.html
    articles:
      text: User Guides
      menu:
      - text: Creating ADXX
        href: articles/adxx.html
    history:
      icon: fa-history
      href: articles/website-versions.html
      aria-label: Previous Release Websites
    slack:
      icon: fa-slack
      href: https://pharmaverse.slack.com/
      aria-label: Join the pharmaverse Slack!
    newissue:
      icon: fa-bug
      href: https://github.com/pharmaverse/admiraltemplate/issues/new/choose
      aria-label: Report an issue