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‎.nojekyll

+1-1
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@@ -1 +1 @@
1-
dde62fe1
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‎R/readme.html

+208-13
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@@ -2,12 +2,12 @@
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<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"><head>
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<meta charset="utf-8">
5-
<meta name="generator" content="quarto-1.3.450">
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<meta name="generator" content="quarto-1.4.549">
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<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
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<title>Pharmaverse Blog – readme</title>
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<title>Pharmaverse Blog</title>
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<style>
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code{white-space: pre-wrap;}
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span.smallcaps{font-variant: small-caps;}
@@ -47,7 +47,13 @@
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"collapse-after": 3,
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"panel-placement": "end",
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"type": "overlay",
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"limit": 20,
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"limit": 50,
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"keyboard-shortcut": [
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"f",
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"/",
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"s"
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],
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"show-item-context": false,
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"language": {
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"search-no-results-text": "No results",
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"search-matching-documents-text": "matching documents",
@@ -56,6 +62,7 @@
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"search-more-match-text": "more match in this document",
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"search-more-matches-text": "more matches in this document",
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"search-clear-button-title": "Clear",
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"search-text-placeholder": "",
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"search-detached-cancel-button-title": "Cancel",
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"search-submit-button-title": "Submit",
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"search-label": "Search"
@@ -64,15 +71,18 @@
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<link rel="stylesheet" href="../styles.css">
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<meta property="og:title" content="Pharmaverse Blog">
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<meta property="og:description" content="">
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<meta property="og:site_name" content="Pharmaverse Blog">
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</head>
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<body class="nav-fixed fullcontent">
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<div id="quarto-search-results"></div>
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<header id="quarto-header" class="headroom fixed-top">
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<nav class="navbar navbar-expand-lg navbar-dark ">
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<nav class="navbar navbar-expand-lg " data-bs-theme="dark">
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<div class="navbar-container container-fluid">
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<div class="navbar-brand-container">
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<div class="navbar-brand-container mx-auto">
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<a class="navbar-brand" href="../index.html">
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<span class="navbar-title">Pharmaverse Blog</span>
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</a>
@@ -84,15 +94,15 @@
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<div class="collapse navbar-collapse" id="navbarCollapse">
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<ul class="navbar-nav navbar-nav-scroll ms-auto">
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<li class="nav-item compact">
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<a class="nav-link" href="https://github.com/pharmaverse/blog" rel="" target=""><i class="bi bi-github" role="img" aria-label="github">
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<a class="nav-link" href="https://github.com/pharmaverse/blog"> <i class="bi bi-github" role="img" aria-label="github">
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</i>
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<span class="menu-text"></span></a>
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<span class="menu-text"></span></a>
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</li>
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</ul>
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<div class="quarto-navbar-tools">
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</div> <!-- /navcollapse -->
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<div class="quarto-navbar-tools">
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<a href="" class="quarto-color-scheme-toggle quarto-navigation-tool px-1" onclick="window.quartoToggleColorScheme(); return false;" title="Toggle dark mode"><i class="bi"></i></a>
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</div>
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</div> <!-- /navcollapse -->
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</div> <!-- /container-fluid -->
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</nav>
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</header>
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<section id="files-in-this-folder" class="level1">
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<h1>Files in this folder</h1>
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<p>Some of these files help in creating/developing blog-posts, others are used by our CICD pipeline.</p>
@@ -168,6 +179,33 @@ <h2 class="anchored" data-anchor-id="development-files">development files</h2>
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}
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}
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}
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const toggleGiscusIfUsed = (isAlternate, darkModeDefault) => {
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const baseTheme = document.querySelector('#giscus-base-theme')?.value ?? 'light';
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const alternateTheme = document.querySelector('#giscus-alt-theme')?.value ?? 'dark';
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let newTheme = '';
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if(darkModeDefault) {
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newTheme = isAlternate ? baseTheme : alternateTheme;
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} else {
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newTheme = isAlternate ? alternateTheme : baseTheme;
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}
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const changeGiscusTheme = () => {
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// From: https://github.com/giscus/giscus/issues/336
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const sendMessage = (message) => {
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const iframe = document.querySelector('iframe.giscus-frame');
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if (!iframe) return;
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iframe.contentWindow.postMessage({ giscus: message }, 'https://giscus.app');
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}
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sendMessage({
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setConfig: {
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theme: newTheme
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}
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});
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}
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const isGiscussLoaded = window.document.querySelector('iframe.giscus-frame') !== null;
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if (isGiscussLoaded) {
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changeGiscusTheme();
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}
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}
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const toggleColorMode = (alternate) => {
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// Switch the stylesheets
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const alternateStylesheets = window.document.querySelectorAll('link.quarto-color-scheme.quarto-color-alternate');
@@ -234,13 +272,15 @@ <h2 class="anchored" data-anchor-id="development-files">development files</h2>
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return localAlternateSentinel;
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}
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}
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let localAlternateSentinel = 'default';
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const darkModeDefault = false;
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let localAlternateSentinel = darkModeDefault ? 'alternate' : 'default';
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// Dark / light mode switch
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window.quartoToggleColorScheme = () => {
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// Read the current dark / light value
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let toAlternate = !hasAlternateSentinel();
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toggleColorMode(toAlternate);
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setStyleSentinel(toAlternate);
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toggleGiscusIfUsed(toAlternate, darkModeDefault);
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};
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// Ensure there is a toggle, if there isn't float one in the top right
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if (window.document.querySelector('.quarto-color-scheme-toggle') === null) {
@@ -319,10 +359,9 @@ <h2 class="anchored" data-anchor-id="development-files">development files</h2>
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// clear code selection
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e.clearSelection();
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});
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function tippyHover(el, contentFn) {
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function tippyHover(el, contentFn, onTriggerFn, onUntriggerFn) {
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const config = {
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allowHTML: true,
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content: contentFn,
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maxWidth: 500,
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delay: 100,
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arrow: false,
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interactive: true,
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interactiveBorder: 10,
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theme: 'quarto',
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placement: 'bottom-start'
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placement: 'bottom-start',
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};
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if (contentFn) {
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config.content = contentFn;
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}
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if (onTriggerFn) {
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config.onTrigger = onTriggerFn;
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}
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if (onUntriggerFn) {
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config.onUntrigger = onUntriggerFn;
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}
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window.tippy(el, config);
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}
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const noterefs = window.document.querySelectorAll('a[role="doc-noteref"]');
@@ -347,6 +395,125 @@ <h2 class="anchored" data-anchor-id="development-files">development files</h2>
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const note = window.document.getElementById(id);
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return note.innerHTML;
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});
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}
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const xrefs = window.document.querySelectorAll('a.quarto-xref');
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const processXRef = (id, note) => {
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// Strip column container classes
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const stripColumnClz = (el) => {
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el.classList.remove("page-full", "page-columns");
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if (el.children) {
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for (const child of el.children) {
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stripColumnClz(child);
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}
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}
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}
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stripColumnClz(note)
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if (id === null || id.startsWith('sec-')) {
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// Special case sections, only their first couple elements
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const container = document.createElement("div");
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if (note.children && note.children.length > 2) {
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container.appendChild(note.children[0].cloneNode(true));
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for (let i = 1; i < note.children.length; i++) {
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const child = note.children[i];
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if (child.tagName === "P" && child.innerText === "") {
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continue;
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} else {
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container.appendChild(child.cloneNode(true));
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break;
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}
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}
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if (window.Quarto?.typesetMath) {
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window.Quarto.typesetMath(container);
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}
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return container.innerHTML
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} else {
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if (window.Quarto?.typesetMath) {
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window.Quarto.typesetMath(note);
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}
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return note.innerHTML;
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}
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} else {
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// Remove any anchor links if they are present
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const anchorLink = note.querySelector('a.anchorjs-link');
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if (anchorLink) {
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anchorLink.remove();
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}
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if (window.Quarto?.typesetMath) {
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window.Quarto.typesetMath(note);
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}
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// TODO in 1.5, we should make sure this works without a callout special case
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if (note.classList.contains("callout")) {
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return note.outerHTML;
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} else {
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return note.innerHTML;
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}
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}
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}
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for (var i=0; i<xrefs.length; i++) {
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const xref = xrefs[i];
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tippyHover(xref, undefined, function(instance) {
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instance.disable();
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let url = xref.getAttribute('href');
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let hash = undefined;
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if (url.startsWith('#')) {
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hash = url;
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} else {
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try { hash = new URL(url).hash; } catch {}
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}
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if (hash) {
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const id = hash.replace(/^#\/?/, "");
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const note = window.document.getElementById(id);
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if (note !== null) {
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try {
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const html = processXRef(id, note.cloneNode(true));
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instance.setContent(html);
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} finally {
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instance.enable();
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instance.show();
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}
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} else {
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// See if we can fetch this
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fetch(url.split('#')[0])
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.then(res => res.text())
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.then(html => {
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const parser = new DOMParser();
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const htmlDoc = parser.parseFromString(html, "text/html");
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const note = htmlDoc.getElementById(id);
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if (note !== null) {
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const html = processXRef(id, note);
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instance.setContent(html);
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}
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}).finally(() => {
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instance.enable();
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instance.show();
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});
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}
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} else {
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// See if we can fetch a full url (with no hash to target)
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// This is a special case and we should probably do some content thinning / targeting
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fetch(url)
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.then(res => res.text())
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.then(html => {
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const parser = new DOMParser();
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const htmlDoc = parser.parseFromString(html, "text/html");
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const note = htmlDoc.querySelector('main.content');
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if (note !== null) {
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// This should only happen for chapter cross references
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// (since there is no id in the URL)
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// remove the first header
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if (note.children.length > 0 && note.children[0].tagName === "HEADER") {
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note.children[0].remove();
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}
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const html = processXRef(null, note);
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instance.setContent(html);
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}
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}).finally(() => {
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instance.enable();
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instance.show();
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});
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}
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}, function(instance) {
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});
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}
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let selectedAnnoteEl;
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const selectorForAnnotation = ( cell, annotation) => {
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}
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div.style.top = top - 2 + "px";
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div.style.height = height + 4 + "px";
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div.style.left = 0;
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let gutterDiv = window.document.getElementById("code-annotation-line-highlight-gutter");
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if (gutterDiv === null) {
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gutterDiv = window.document.createElement("div");
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});
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selectedAnnoteEl = undefined;
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};
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// Handle positioning of the toggle
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window.addEventListener(
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"resize",
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throttle(() => {
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elRect = undefined;
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if (selectedAnnoteEl) {
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selectCodeLines(selectedAnnoteEl);
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}
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}, 10)
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);
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function throttle(fn, ms) {
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let throttle = false;
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let timer;
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return (...args) => {
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if(!throttle) { // first call gets through
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fn.apply(this, args);
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throttle = true;
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} else { // all the others get throttled
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if(timer) clearTimeout(timer); // cancel #2
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timer = setTimeout(() => {
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fn.apply(this, args);
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timer = throttle = false;
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}, ms);
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}
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};
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}
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// Attach click handler to the DT
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const annoteDls = window.document.querySelectorAll('dt[data-target-cell]');
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for (const annoteDlNode of annoteDls) {
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</body></html>

‎_redirects

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/point /posts/2023-10-30_floating_point
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/order /posts/2023-11-27_higher_order
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/0 /posts/2023-12-18_admiral_1_0
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/examples /posts/2023-12-20_p_k__examples
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/up... /posts/2024-01-04_end_of__year__up...
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/category/r /#category=R
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/category/shiny /#category=shiny

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