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Add gtsummary function for table 09 #532

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GitHub Actions / Unit Tests Summary failed Jan 16, 2025 in 0s

2 errors, 137 pass in 1m 22s

1 files ±0 30 suites ±0 1m 22s ⏱️ -6s
139 tests ±0 137 ✅ - 2 0 💤 ±0 0 ❌ ±0 2 🔥 +2
509 runs ±0 377 ✅ ±0 130 💤 - 2 0 ❌ ±0 2 🔥 +2

Results for commit a523ac2. ± Comparison against earlier commit 006ddc6.

Annotations

Check failure on line 0 in fda_table_09

github-actions / Unit Tests Summary

1 out of 6 runs with error: Table_09_generation_works_with_default_values (fda_table_09)

cardinal.Rcheck/tests/testthat/junit-result.xml [took 0s]

Raw output


            Error in `tbl_hierarchical(df, variables = c(soc_var, pref_var), by = arm_var,  ('test-fda-table_09.R:354:3')
Error in `tbl_hierarchical(df, variables = c(soc_var, pref_var), by = arm_var, 
    id = id_var, denominator = denominator, overall_row = TRUE, 
    label = "..ard_hierarchical_overall.." ~ "Any SAE")`: Error processing `label` argument.
! Can't select columns that don't exist. x Column `..ard_hierarchical_overall..` doesn't exist.
i Select among columns "AESOC", "AEDECOD", and "overall"
Backtrace:
     x
  1. \-cardinal::make_table_09(adae, adsl) at test-fda-table_09.R:354:3
  2.   \-cardinal::make_table_09_gtsummary(...)
  3.     \-gtsummary::tbl_hierarchical(...)
  4.       \-gtsummary:::internal_tbl_hierarchical(...)
  5.         +-cards::process_formula_selectors(...)
  6.         \-cards:::process_formula_selectors.data.frame(...)
  7.           \-cards::compute_formula_selector(...)
  8.             \-cards::cards_select(...)
  9.               \-base::tryCatch(...)
 10.                 \-base (local) tryCatchList(expr, classes, parentenv, handlers)
 11.                   \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 12.                     \-value[[3L]](cond)
 13.                       \-cli::cli_abort(...)
 14.                         \-rlang::abort(...)

Check failure on line 0 in fda_table_09

github-actions / Unit Tests Summary

1 out of 6 runs with error: Table_09_generation_works_with_gtsummary_with_custom_values (fda_table_09)

cardinal.Rcheck/tests/testthat/junit-result.xml [took 0s]

Raw output


            Error in `tbl_hierarchical(df, variables = c(soc_var, pref_var), by = arm_var,  ('test-fda-table_09.R:367:3')
Error in `tbl_hierarchical(df, variables = c(soc_var, pref_var), by = arm_var, 
    id = id_var, denominator = denominator, overall_row = TRUE, 
    label = "..ard_hierarchical_overall.." ~ "Any SAE")`: Error processing `label` argument.
! Can't select columns that don't exist. x Column `..ard_hierarchical_overall..` doesn't exist.
i Select among columns "AESOC", "AEDECOD", and "overall"
Backtrace:
     x
  1. \-cardinal::make_table_09_gtsummary(df = adae, denominator = adsl) at test-fda-table_09.R:367:3
  2.   \-gtsummary::tbl_hierarchical(...)
  3.     \-gtsummary:::internal_tbl_hierarchical(...)
  4.       +-cards::process_formula_selectors(...)
  5.       \-cards:::process_formula_selectors.data.frame(...)
  6.         \-cards::compute_formula_selector(...)
  7.           \-cards::cards_select(...)
  8.             \-base::tryCatch(...)
  9.               \-base (local) tryCatchList(expr, classes, parentenv, handlers)
 10.                 \-base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 11.                   \-value[[3L]](cond)
 12.                     \-cli::cli_abort(...)
 13.                       \-rlang::abort(...)

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