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Refresh template table
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‎quarto/figure-templates/template-fig_03.qmd

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@@ -34,20 +34,20 @@ Required variables:
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- **`df`**: The variables specified by `arm_var`, `id_var`, `saffl_var`, `trtsdtm_var`, `trtedtm_var` and `dctreas_var`.
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| Argument | Description | Default |
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|:--------------|:------------------------------------------|:--------------|
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| `df` | (`data.frame`) Dataset (typically ADSL) required to build figure. | *No default* |
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| `arm_var` | (`character`) Arm variable used to split table into columns. | `"ARM"` |
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| `saffl_var` | (`character`) Flag variable used to indicate inclusion in safety population. | `"SAFFL"` |
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| `id_var` | (`character`) Identifier variable used to count the participants within each flag. | `"USUBJID"` |
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| `trtsdtm_var` | (`character`) Treatment start datetime variable in df. | `"TRTSDTM"` |
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| `trtedtm_var` | (`character`) Treatment end datetime variable in df. | `"TRTEDTM"` |
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| `u_trtdur` | (`character`) Unit for duration of treatment. Options are `"days"`, `"weeks"`, `"months"` and `"years"`. | `"days"` |
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| `dctreas_var` | (`character`) Reason for treatment discontinuation variable used to split figure into lines. | `"DCTREAS"` |
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| `x_lab` | (`character`) x-axis label. | `paste0("Time from first dose (", u_trtdur, ")")` |
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| `y_lab` | (`character`) y-axis label. | `"Percent of Patients (%)"` |
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| `xticks` | (`vector` of `numeric`) x-axis tick positions. If `NA` (default), tick mark positions are automatically calculated. | `NA` |
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| `add_table` | (`flag`) whether "Number of Patients" table should be printed under the plot. | `TRUE` |
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| Argument | Description | Default |
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|:--------------|:-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:--------------------------------------------------|
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| `df` | (`data.frame`) Dataset (typically ADSL) required to build figure. | *No default* |
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| `arm_var` | (`character`) Arm variable used to split table into columns. | `"ARM"` |
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| `saffl_var` | (`character`) Flag variable used to indicate inclusion in safety population. | `"SAFFL"` |
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| `id_var` | (`character`) Identifier variable used to count the participants within each flag. | `"USUBJID"` |
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| `trtsdtm_var` | (`character`) Treatment start datetime variable in df. | `"TRTSDTM"` |
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| `trtedtm_var` | (`character`) Treatment end datetime variable in df. | `"TRTEDTM"` |
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| `u_trtdur` | (`character`) Unit for duration of treatment. Options are `"days"`, `"weeks"`, `"months"` and `"years"`. | `"days"` |
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| `dctreas_var` | (`character`) Reason for treatment discontinuation variable used to split figure into lines. | `"DCTREAS"` |
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| `x_lab` | (`character`) x-axis label. | `paste0("Time from first dose (", u_trtdur, ")")` |
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| `y_lab` | (`character`) y-axis label. | `"Percent of Patients (%)"` |
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| `xticks` | (`vector` of `numeric`) x-axis tick positions. If `NA` (default), tick mark positions are automatically calculated. | `NA` |
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| `add_table` | (`flag`) whether "Number of Patients" table should be printed under the plot. | `TRUE` |
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| `annotations` | (named `list` of `character`) List of annotations to add to the figure. Valid annotation types are `title`, `subtitles`, and `caption`. Each name-value pair should use the annotation type as name and the desired string as value. | `NULL` |
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Source code for this function is available [here](https://github.com/pharmaverse/falcon/blob/main/R/fda-fig_03.R).

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