16_popvae.srun

#!/bin/bash
#SBATCH -A phillipslab
#SBATCH --partition=phillips       ### Partition
#SBATCH --job-name=GATK    ### Job Name
#SBATCH --time=240:00:00        ### WallTime
#SBATCH --nodes=1              ### Number of Nodes
#SBATCH --ntasks=1             ### Number of tasks per array job
#SBATCH --array=0-2          ### Array index
#SBATCH --cpus-per-task=1            ### Number of CPU cores per task

export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK


cd /projects/phillipslab/ateterina/CITP_pi/data/



LIST=(CE CB CT)
SP=${LIST[$SLURM_ARRAY_TASK_ID]}



source ~/.bashrc
conda activate popvae


popvae.py --infile ${SP}.CITP.filt.3-300.vcf --out ./${SP}_popvae_FIN --seed 42