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pMTnet.md

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Running pMTnet

We provide a config file and a pretrained model to reproduce the experiment on pMTnet reported in our paper.

Steps to reproduce the experiment

  1. In the provided config file at <PATH_TO_REPO>/sample_configs/pmtnet.json, substitute all the occurences of <PATH_TO_REPO> to the actual path where you cloned this repository.

  2. In the provided config file at <PATH_TO_REPO>/sample_configs/pmtnet.json, change the root entry to a folder where you want to store the results.

  3. (optional) If you installed DECODE in a conda environment, activate the environment, e.g. (if your environment is called decode)

conda activate decode
  1. Run DECODE
run_interpretability_pipeline --config <PATH_TO_REPO>/sample_configs/pmtnet.json