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@@ -412,7 +412,7 @@ and piranha will check which ones you have installed with your version of medaka
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This flag can be used to configure the mapping options to fine-tune the sensistivity of [minimap2](https://academic.oup.com/bioinformatics/article/34/18/3094/4994778) for your data.
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Specify one or more minimap2 command line options to overwrite the default mapping settings. The current default mapping configuration is set to `-x asm20`, however recent data has suggested for shorter read lengths there are sensistivity issues for samples diverged from the pre-installed reference set.
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Specify one or more minimap2 command line options to overwrite the default mapping settings. The current default mapping configuration is set to `-x asm20`, however recent data has suggested for shorter read lengths there are sensitivity issues for samples diverged from the pre-installed reference set.
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The options take the form `flag=value` and can be any number of space-delimited options.
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