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SPAPB1A11.03 is probably a lactate dehydrogenase #3761

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ValWood opened this issue Oct 25, 2024 · 1 comment
Open

SPAPB1A11.03 is probably a lactate dehydrogenase #3761

ValWood opened this issue Oct 25, 2024 · 1 comment
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@ValWood
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ValWood commented Oct 25, 2024

see #3239

was previously annotated as lactate dehydrogenase from S. cerev isiae ortholog

I've propagated data from CYB2 of S. cerevisiae, but I still have a doubt. In S. cerevisiae and other yeasts, CYB2 consists of two discrete domains, an N-terminal cytochrome b domain and a C-terminal flavin-binding domain. The cytochrome b domain is required for efficient cytochrome c reduction.
Moreover, all have predicted mitochondrial targeting signals. SPAPB1A11.03 lacks both the targeting signal and the N-terminal cytochrome b domain, so I wondered if it is really an ortholog of S. cerevisiae CYB2. In the absence of any experimental data, I think we should not associate any reaction to SPAPB1A11.03.
What do you think ?

but I still think it is likely to be a lactate dehydrogenase.

The E.coli homolg (which is closer) doesn't have the cytochroma b domain

https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fwww.pombase.org%2Fgene%2FSPAPB1A11.03&data=05%7C02%7Cvw253%40cam.ac.uk%7Ccf6456f7b269421cc32d08dcf4e60b22%7C49a50445bdfa4b79ade3547b4f3986e9%7C1%7C0%7C638654516059606989%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=xbhOauGjgAQN0cQ%2BZ1YJQA9supAtzaU9aZpPj4Yib8Q%3D&reserved=0

@ValWood
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ValWood commented Jan 27, 2025

closing for now, it has "probable lactate dehydrogensase' in the product line

@ValWood ValWood closed this as completed Jan 27, 2025
@ValWood ValWood reopened this Jan 27, 2025
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