GO-AM Model ribofavin biosynthetic process GO:0009231

[ValWood]

Template for GO-CAM Models

Pathway label:

riboflavin biosynthetic process" (GO:0009231)

Noctua:
http://noctua.geneontology.org/workbench/noctua-visual-pathway-editor/?model_id=gomodel%

Pathway summary:
https://pathway.yeastgenome.org/YEAST/NEW-IMAGE?type=PATHWAY&object=YEAST-RIBOSYN-PWY&detail-level=2

riboflavin, FMN and FAD biosynthesis

Gene ID Gene Accession Gene name Reaction id Reaction EC Enzymatic activity Evidence
YDR487C RIB3 DIOHBUTANONEPSYN-RXN 4.1.99.12 3,4-dihydroxy-2-butanone-4-phosphate synthase No Evidence Code
YBL033C RIB1 GTP-CYCLOHYDRO-II-RXN 3.5.4.25 GTP cyclohydrolase II No Evidence Code
YBR153W RIB7 RXN3O-110 No EC# diaminohydroxyphoshoribosylaminopyrimidine deaminase No Evidence Code
YOL066C RIB2 RXN3O-164 No EC# DRAP deaminase No Evidence Code
YOL143C RIB4 LUMAZINESYN-RXN 2.5.1.78 lumazine synthase No Evidence Code
YBR256C RIB5 RIBOFLAVIN-SYN-RXN 2.5.1.9 riboflavine synthetase No Evidence Code
YDR236C FMN1 RIBOFLAVINKIN-RXN 2.7.1.26 riboflavin kinase No Evidence Code
YDL045C FAD1 FADSYN-RXN 2.7.7.2 FAD synthetase No Evidence Code

Annotations in PomBase (Query):
https://www.pombase.org/term_genes/GO:0009231

MIssing from model (Query):
https://www.pombase.org/results/from/id/

TO DO
i.e.

• Look into more precise localization
• Integrate missing entities