From 3afe280c0d0bda551da90741ac584e870eafedc1 Mon Sep 17 00:00:00 2001
From: kiranNukal <sai.kiran.nukala@ibm.com>
Date: Mon, 27 Jan 2025 20:40:15 +0530
Subject: [PATCH 1/4] Update build_info.json
---
s/scipy/build_info.json | 9 ++++++---
1 file changed, 6 insertions(+), 3 deletions(-)
diff --git a/s/scipy/build_info.json b/s/scipy/build_info.json
index ecfd6398ce..2fe3ed42fa 100644
--- a/s/scipy/build_info.json
+++ b/s/scipy/build_info.json
@@ -5,15 +5,18 @@
"version": "v1.10.1",
"wheel_build" : true,
"default_branch": "main",
- "build_script": "scipy_v1.10.1_ubi_9.3.sh",
+ "build_script": "scipy_ubi_9.3.sh",
"package_dir": "s/scipy",
"docker_build": false,
"validate_build_script": true,
"use_non_root_user": false,
- "*": {
+ "v1.10.1": {
"build_script": "scipy_v1.10.1_ubi_9.3.sh"
},
- "v*.*.*": {
+ "v1.11.3": {
+ "build_script": "scipy_v1.11.3_ubi_9.3.sh"
+ },
+ "*": {
"build_script": "scipy_ubi_9.3.sh"
}
}
From 20c3ac69905afdc0e1f1159321f837c088447612 Mon Sep 17 00:00:00 2001
From: kiranNukal <sai.kiran.nukala@ibm.com>
Date: Mon, 27 Jan 2025 20:40:46 +0530
Subject: [PATCH 2/4] Create scipy_v1.11.3_ubi_9.3.sh
---
s/scipy/scipy_v1.11.3_ubi_9.3.sh | 77 ++++++++++++++++++++++++++++++++
1 file changed, 77 insertions(+)
create mode 100644 s/scipy/scipy_v1.11.3_ubi_9.3.sh
diff --git a/s/scipy/scipy_v1.11.3_ubi_9.3.sh b/s/scipy/scipy_v1.11.3_ubi_9.3.sh
new file mode 100644
index 0000000000..f5a761586f
--- /dev/null
+++ b/s/scipy/scipy_v1.11.3_ubi_9.3.sh
@@ -0,0 +1,77 @@
+#!/bin/bash -e
+# -----------------------------------------------------------------------------
+#
+# Package : scipy
+# Version : v1.11.3
+# Source repo : https://github.com/scipy/scipy
+# Tested on : UBI 9.3
+# Language : Python, C, Fortran, C++, Cython, Meson
+# Travis-Check : True
+# Script License: Apache License, Version 2 or later
+# Maintainer : Sai Kiran Nukala <sai.kiran.nukala@ibm.com>
+#
+# Disclaimer: This script has been tested in root mode on given
+# ========== platform using the mentioned version of the package.
+# It may not work as expected with newer versions of the
+# package and/or distribution. In such case, please
+# contact "Maintainer" of this script.
+#
+# ----------------------------------------------------------------------------
+
+PACKAGE_NAME=scipy
+PACKAGE_VERSION=${1:-v1.11.3}
+PACKAGE_URL=https://github.com/scipy/scipy
+
+echo "Installing core dependencies..."
+# install core dependencies
+yum install -y gcc gcc-c++ gcc-fortran pkg-config openblas-devel python python3-pip python3 python3-devel git atlas
+echo "Core dependencies installed."
+
+echo "Installing scipy dependencies and build-setup dependencies..."
+# install scipy dependency (numpy wheel gets built and installed) and build-setup dependencies
+pip install meson 'wheel<0.39.0' beniget==0.4.0 pythran==0.12.1 pyproject_metadata==0.8.1 'pybind11>=2.10.4' gast==0.5.0 meson-python ninja numpy==1.21.6 'setuptools<60.0' Cython==0.29.37 'meson-python<0.13.0,>=0.11.0' 'patchelf>=0.11.0' pooch pytest build
+pip3 install doit click rich_click pydevtool
+echo "Dependencies installed."
+
+echo "Cloning source repository..."
+# clone source repository
+git clone $PACKAGE_URL
+cd $PACKAGE_NAME
+git checkout $PACKAGE_VERSION
+git submodule update --init
+echo "Source repository cloned and checked out to version $PACKAGE_VERSION."
+
+echo "Building and installing $PACKAGE_NAME..."
+# issue: https://github.com/scipy/scipy/issues/21100#issuecomment-2538514333
+if [[ $PACKAGE_VERSION == "v1.11.3" ]] && [[ $(git diff pyproject.toml | wc -l) -eq 0 ]]; then
+ sed -i \
+ -e 's/"pythran>=0.12.0,<0.13.0"/"pythran==0.12.1"/g' \
+ -e '/"pythran==0.12.1",/a "pyproject_metadata==0.8.1",' \
+ -e '/"pythran==0.12.1",/a "gast==0.5.0",' \
+ -e '/"pythran==0.12.1",/a "beniget==0.4.0",' pyproject.toml
+fi
+# build and install
+if ! pip install .; then
+ echo "------------------$PACKAGE_NAME:Install_fails-------------------------------------"
+ echo "$PACKAGE_URL $PACKAGE_NAME"
+ echo "$PACKAGE_NAME | $PACKAGE_URL | $PACKAGE_VERSION | GitHub | Fail | Install_Fails"
+ exit 1
+fi
+echo "Build and installation completed successfully."
+
+echo "Running specific tests using pytest..."
+# run specific tests using pytest
+# The `--import-mode=importlib` option is used to resolve import path conflicts
+# that arise due to multiple instances of the same module being found in different locations.
+pip3 install pytest==6.2.5
+if ! (pytest --import-mode=importlib scipy/linalg/tests/test_basic.py); then
+ echo "------------------$PACKAGE_NAME::Test_Fail-------------------------"
+ echo "$PACKAGE_VERSION $PACKAGE_NAME"
+ echo "$PACKAGE_NAME | $PACKAGE_URL | $PACKAGE_VERSION | Fail | Test_Fail"
+ exit 2
+else
+ echo "------------------$PACKAGE_NAME::Test_Pass---------------------"
+ echo "$PACKAGE_VERSION $PACKAGE_NAME"
+ echo "$PACKAGE_NAME | $PACKAGE_URL | $PACKAGE_VERSION | Pass | Test_Success"
+ exit 0
+fi
From 5255667652cdefda47afc0ae1bb8e7b05cabf5d8 Mon Sep 17 00:00:00 2001
From: kiranNukal <sai.kiran.nukala@ibm.com>
Date: Wed, 5 Feb 2025 09:42:57 +0530
Subject: [PATCH 3/4] Update scipy_v1.11.3_ubi_9.3.sh
---
s/scipy/scipy_v1.11.3_ubi_9.3.sh | 3 ++-
1 file changed, 2 insertions(+), 1 deletion(-)
diff --git a/s/scipy/scipy_v1.11.3_ubi_9.3.sh b/s/scipy/scipy_v1.11.3_ubi_9.3.sh
index f5a761586f..89fd9fca07 100644
--- a/s/scipy/scipy_v1.11.3_ubi_9.3.sh
+++ b/s/scipy/scipy_v1.11.3_ubi_9.3.sh
@@ -21,7 +21,8 @@
PACKAGE_NAME=scipy
PACKAGE_VERSION=${1:-v1.11.3}
PACKAGE_URL=https://github.com/scipy/scipy
-
+PACKAGE_DIR=scipy
+
echo "Installing core dependencies..."
# install core dependencies
yum install -y gcc gcc-c++ gcc-fortran pkg-config openblas-devel python python3-pip python3 python3-devel git atlas
From fab7b691ce827a8038b0bebbb5279242cfc065e3 Mon Sep 17 00:00:00 2001
From: kiranNukal <sai.kiran.nukala@ibm.com>
Date: Fri, 14 Feb 2025 08:04:06 +0530
Subject: [PATCH 4/4] Update scipy_v1.11.3_ubi_9.3.sh
---
s/scipy/scipy_v1.11.3_ubi_9.3.sh | 8 --------
1 file changed, 8 deletions(-)
diff --git a/s/scipy/scipy_v1.11.3_ubi_9.3.sh b/s/scipy/scipy_v1.11.3_ubi_9.3.sh
index 89fd9fca07..215d9b455d 100644
--- a/s/scipy/scipy_v1.11.3_ubi_9.3.sh
+++ b/s/scipy/scipy_v1.11.3_ubi_9.3.sh
@@ -43,14 +43,6 @@ git submodule update --init
echo "Source repository cloned and checked out to version $PACKAGE_VERSION."
echo "Building and installing $PACKAGE_NAME..."
-# issue: https://github.com/scipy/scipy/issues/21100#issuecomment-2538514333
-if [[ $PACKAGE_VERSION == "v1.11.3" ]] && [[ $(git diff pyproject.toml | wc -l) -eq 0 ]]; then
- sed -i \
- -e 's/"pythran>=0.12.0,<0.13.0"/"pythran==0.12.1"/g' \
- -e '/"pythran==0.12.1",/a "pyproject_metadata==0.8.1",' \
- -e '/"pythran==0.12.1",/a "gast==0.5.0",' \
- -e '/"pythran==0.12.1",/a "beniget==0.4.0",' pyproject.toml
-fi
# build and install
if ! pip install .; then
echo "------------------$PACKAGE_NAME:Install_fails-------------------------------------"