joss_repositories_20251012_210203.csv

software_repository
"https://github.com/bc3LC/rhap"
"https://github.com/omerveille/VSMOD"
"https://github.com/sys-bio/ratesb_python"
"https://github.com/ashleyblawas/respdetect"
"https://github.com/carlacupcake/hashin_shtrikman_mp.git"
"https://github.com/finsberg/fenicsx-beat"
"https://github.com/cassidymwagner/fluidsf"
"https://gitlab.eclipse.org/eclipse/comma/comma"
"https://github.com/adtzlr/felupe/"
"https://github.com/druglogics/pydruglogics"
"https://github.com/pudeIko/piva"
"https://github.com/decargroup/pykoop"
"https://github.com/tum-esm/ivy"
"https://code.europa.eu/kada/mafw"
"https://github.com/openCARP-org/FACILE-RS"
"https://github.com/navasmontilla/CAELUM"
"https://github.com/NREL/VirtualEngineering"
"https://github.com/JuliaGeo/CFTime.jl"
"https://github.com/Chroma-CITI/namosim"
"https://github.com/connor-makowski/type_enforced"
"https://github.com/cjtu/craterpy"
"https://github.com/chocoteam/pychoco"
"https://github.com/Mec-iS/arrowspace-rs"
"https://github.com/Climdyn/auto-AUTO"
"https://github.com/simonbesnard1/gedidb"
"https://github.com/GeoArkadeep/Stresslog"
"https://github.com/harvard-nrg/scanbuddy"
"https://github.com/igorrivin/graphem"
"https://github.com/benmkent/SparseGridsKit.jl"
"https://github.com/Lindt8/PHITS-Tools"
"https://github.com/jianhuig/fairmetrics"
"https://gitlab.com/cmbm-ethz/miop"
"https://github.com/oskarhs/AutoHist.jl"
"https://github.com/ChristopheBerthod/Piecewise.jl"
"https://github.com/jmiramont/mcsm-benchs"
"https://github.com/radwinskis/RadGEEToolbox"
"https://github.com/chaoliu-cl/textAnnotatoR"
"https://github.com/Feng-Ji-Lab/FedIRT"
"https://github.com/JosephIsaacTurner/pypaperretriever/"
"https://github.com/comp-phys-marc/qasm-ts"
"https://github.com/GiMattia/PyPLUTO/"
"https://gitlab.com/cosmology-ethz/ufig"
"https://github.com/nasa/condor"
"https://github.com/ConnorStoneAstro/caskade"
"https://github.com/alb3rtjarvis/numbacs"
"https://github.com/cthoyt/chembl-downloader"
"https://github.com/DPP4ResearchGroup/substrateminer.git"
"https://github.com/BlueSpacePotato/hsi-wizard"
"https://github.com/OHDSI/omock"
"https://github.com/oss-slu/Pi4Micronaut"
"https://gitlab.kuleuven.be/gelenslab/publications/pycline"
"https://github.com/DatViseR/Vivid-Volcano"
"https://github.com/gyselax/gyselalibxx"
"https://codeberg.org/benmagill/deflake.rs"
"https://github.com/jake-w-liu/SpecialFunctions"
"https://github.com/DavidRConnell/matlab-igraph"
"https://github.com/yanrong-stacy-song/creditr"
"https://github.com/PhenoApps/Coordinate"
"https://github.com/simonehagey/orbdot"
"https://github.com/MIT-LAE/TASOPT.jl"
"https://github.com/otvam/pypeec"
"https://gitlab.com/djsmithbham/cnearest"
"https://github.com/jbytecode/OperationsResearchModels.jl"
"https://github.com/umami-hep/salt"
"https://gitlab.com/EliseLei/easychem"
"https://github.com/EMSL-Computing/Pore2Chip"
"https://github.com/VILLASframework/node"
"https://github.com/landoskape/syd"
"https://github.com/Nadi-System/nadi-system"
"https://codeberg.org/JPHackstein/GREOPy"
"https://github.com/WilsonGregory/ginjax"
"https://github.com/RandyRDavila/GraphCalc"
"https://github.com/hyex-research/AquaFetch"
"https://github.com/kylejgillett/sounderpy"
"https://github.com/edbiomedai/scmorph/"
"https://gitlab.com/ComputationalScience/idinn"
"https://github.com/braindatalab/PyBispectra"
"https://github.com/Peter-Hogg/SLAP2_Utils"
"https://github.com/CaNS-World/CaNS-Fizzy"
"https://github.com/xuequan818/MatrixFuns.jl"
"https://github.com/underworldcode/underworld3"
"https://github.com/TARGENE/TMLE.jl"
"https://github.com/USEPA/MCSimMod"
"https://github.com/gumilevskij/Framework"
"https://github.com/JoWestermann/smolyax"
"https://github.com/assume-framework/assume"
"https://github.com/bio-phys/asyncmd"
"https://github.com/donishadsmith/neurocaps"
"https://github.com/childmindresearch/actisleep-tracker"
"https://github.com/bge-barcoding/gene_fetch"
"https://github.com/neuromodulation/py_neuromodulation"
"https://github.com/Habiba-Eldababy/Parallel-CDM"
"https://github.com/HzaCode/ChemInformant"
"https://github.com/CLINDA-AAU/simulacrumWorkflowR.git"
"https://github.com/danStich/anadrofish"
"https://github.com/zsylvester/segmenteverygrain"
"https://github.com/pedbrgs/PyCCEA/"
"https://github.com/zhanghe9704/tpsa_sym"
"https://github.com/dragontaoran/sleev"
"https://github.com/simonprovost/scikit-longitudinal"
"https://github.com/filipezabala/voice/"
"https://github.com/supsi-dacd-isaac/BayesReconPy"
"https://github.com/kokkos/kokkos-fft"
"https://github.com/SWIFTSIM/SOAP"
"https://github.com/martinvonk/SPEI"
"https://github.com/LLNL/SSAPy"
"https://github.com/ethz-randomwalk/polytopewalk"
"https://github.com/paranoya/population-synthesis-toolkit"
"https://github.com/almost6heads/ConleyDynamics.jl"
"https://github.com/xiaziyna/PyStarshade"
"https://github.com/avapolzin/spike"
"https://github.com/barricklab/seabreeze"
"https://github.com/Tomaubier/CoperniFUS"
"https://github.com/Trybnetic/paat"
"https://github.com/rnajena/sugar"
"https://github.com/mne-tools/mne-lsl"
"https://github.com/SHF-NAILResearchGroup/HINA"
"https://github.com/ankilab/EvoVis.git"
"https://github.com/pasteurlabs/tesseract-core"
"https://github.com/IDEMSInternational/ExcelToShiny"
"https://github.com/folsomcp/specpolFlow"
"https://github.com/bzrudski/vectorose"
"https://github.com/hyriver/hysetter"
"https://github.com/poissonconsulting/bisonpicsuite"
"https://github.com/JGCRI/gaia"
"https://github.com/Critical-Infrastructure-Systems-Lab/PowNet"
"https://github.com/GEUS-Glaciology-and-Climate/GrIML"
"https://github.com/RWTH-EBC/districtgenerator"
"https://github.com/uit-cosmo/blobmodel"
"https://github.com/project-lighter/lighter"
"https://github.com/s2mLab/pyScienceMode"
"https://github.com/alexdaniel654/qlayers"
"https://github.com/cersonsky-lab/AniSOAP/"
"https://github.com/turbo-sim/TurboFlow"
"https://github.com/genai-impact/ecologits"
"https://github.com/uaf-arctic-eco-modeling/dvm-dos-tem"
"https://github.com/efpl-columbia/PointClouds.jl"
"https://github.com/SynxFlow/SynxFlow"
"https://github.com/DS4Ag/dpest"
"https://github.com/Patrick-Cole/pygmi"
"https://github.com/Huracan-project/huracanpy"
"https://github.com/slcs-jsc/mptrac"
"https://github.com/GreenScheduler/cats"
"https://github.com/mthorrell/gbnet"
"https://github.com/bc3LC/medusa"
"https://github.com/TeamNCMC/cuisto"
"https://github.com/cadet/CADET-Core"
"https://github.com/varchasgopalaswamy/AutoUncertainties"
"https://github.com/x-tabdeveloping/turftopic"
"https://github.com/ZhiweiWei-NAMI/AirFogSim"
"https://zivgitlab.uni-muenster.de/ag-salinga/fastatomstruct"
"https://github.com/Rbfinch/grepq"
"https://github.com/slacgismo/solar-data-tools/"
"https://github.com/matta-research-group/SwiftPol"
"https://github.com/IRL2/nanover-server-py"
"https://github.com/spm/spm"
"https://github.com/T0ngChen/medRCT"
"https://github.com/valentingar/confluxpro/"
"https://github.com/DFKI-NI/syclops"
"https://www.github.com/openmsr/CAD_to_OpenMC"
"https://github.com/angelmons/landlab"
"https://github.com/bempp/kifmm/"
"https://github.com/m-shahbaz-kharal/LiGuard-JOSS"
"https://github.com/maddataanalyst/hextractor"
"https://github.com/JuliaPOMDP/CompressedBeliefMDPs.jl"
"https://github.com/rajmadan96/StochasticDominance.jl.git"
"https://github.com/mantzaris/WunDeeDB.jl"
"https://gitlab.com/grogra/groimp-plugins/Pointcloud"
"https://github.com/levuvietphong/pyTCR/"
"https://github.com/fgerick/Limace.jl"
"https://github.com/carlodev/SegregatedVMSSolver.jl"
"https://github.com/mantzaris/LMDiskANN.jl"
"https://github.com/csiro-risk-assessment/mozzie"
"https://github.com/microplastics-cluster/fragment-mnp"
"https://github.com/grdspcht/ggret/"
"https://github.com/seahorce-scidac/REMORA"
"https://github.com/OpenQuantumComputing/quantumreservoirpy"
"https://github.com/ORNL/icat"
"https://github.com/jonaspleyer/cellular_raza"
"https://github.com/bids-apps/giga_connectome"
"https://github.com/sashakolpakov/dire-jax"
"https://github.com/statistical-thinking/KI.ENNA"
"https://github.com/SPARC-X/SPARC-X-API"
"https://github.com/DenaJGibbon/gibbonNetR"
"https://github.com/HuttleyLab/DiverseSeq"
"https://github.com/chenzhaiyu/abspy"
"https://github.com/Ecos-platform/ecos"
"https://github.com/OpenHPS/openhps-core"
"https://github.com/AgatheSenellart/MultiVae/"
"https://github.com/aslan-ng/keepdelta"
"https://github.com/michalc/OpenTTDLab"
"https://github.com/emsig/elfe3D"
"https://github.com/gabo-di/AquaCrop.jl"
"https://github.com/ImperialCollegeLondon/SWMManywhere"
"https://github.com/utpal-singh/SAnTex"
"https://github.com/phitterio/phitter-kernel"
"https://github.com/bauer-alex/fuzzyclara"
"https://github.com/NumericalMathematics/PositiveIntegrators.jl"
"https://github.com/poissonconsulting/bbousuite"
"https://github.com/nathandecaux/labelprop"
"https://github.com/mattwarkentin/openmpp"
"https://github.com/easystats/modelbased"
"https://github.com/areenberg/MDPSolver"
"https://github.com/nichollsh/AGNI"
"https://github.com/ColmTalbot/gwpopulation"
"https://github.com/GeoscienceAustralia/eo-tides"
"https://github.com/unmannedlab/ekf_cal/"
"https://github.com/ropensci/gtexr"
"https://github.com/metagentools/gbintk"
"https://github.com/mantzaris/BenchmarkDataNLP.jl"
"https://github.com/nationalparkservice/NPSdataverse.git"
"https://github.com/meantrix/corrp"
"https://github.com/LLNL/popclass"
"https://github.com/morrowcj/remotePARTS"
"https://github.com/aris-mav/NMRInversions.jl"
"https://github.com/scikit-hep/vector"
"https://github.com/ORNL/AdditiveFOAM.git"
"https://github.com/thelfer/MFrontGallery"
"https://github.com/gerlero/foamlib"
"https://github.com/TRIQS/ctseg"
"https://github.com/nomad-coe/greenX"
"https://github.com/SnirMeiri/LCOI_local_crystalline_orientation_identifier"
"https://github.com/wal-yan/target-methylseq-qc"
"https://github.com/SimVascular/svZeroDSolver.git"
"https://github.com/ANP-Granular/ParticleTracking"
"https://github.com/rformassspectrometry/SpectriPy"
"https://github.com/arkavo/CUDA-METRO"
"https://github.com/deephyper/deephyper"
"https://github.com/fmicompbio/ez_zarr"
"https://github.com/schmidtfa/pyrasa"
"https://github.com/kmkuesters/pooledpeaks"
"https://github.com/lllangWV/ParquetDB"
"https://github.com/AUTODIAL/AutoEIS/"
"https://github.com/mggg/votekit"
"https://github.com/RadioAstronomySoftwareGroup/pyuvdata/"
"https://github.com/milanofthe/pathsim"
"https://github.com/OPM/opm-simulators"
"https://github.com/ilikecubesnstuff/commensurability"
"https://github.com/trevorgokey/besmarts"
"https://github.com/casasglobal-org/psymple/"
"https://github.com/james-trayford/strauss"
"https://github.com/EXP-code/EXP"
"https://github.com/dspelaez/extended-wdm/"
"https://github.com/minterpy-project/minterpy"
"https://github.com/alexandercoulter/fastfrechet"
"https://github.com/sintefmath/SurfaceWaterIntegratedModeling.jl.git"
"https://github.com/YaoGroup/DIFFICE_jax"
"https://github.com/jonotuke/BREADR"
"https://github.com/PatrickJTaylor/pengWann"
"https://github.com/ALive-research/Slicer-Liver"
"https://github.com/Aravind-Sundararajan/MocoExtendProblem"
"https://github.com/carnival-data/carnival"
"https://github.com/KskAdch/TopologicalNumbers.jl"
"https://github.com/mncrowe/QGDipoles.jl/"
"https://github.com/philip-long/constrained_manipulability"
"https://gitlab.com/dlr-ve/esy/vencopy/vencopy"
"https://github.com/OSUDSL/pydre"
"https://github.com/Schuch666/eva3dm"
"https://github.com/itsoulos/GlobalOptimus/"
"https://github.com/acil-bwh/bayes_traj/"
"https://github.com/mind-inria/mri-nufft"
"https://gitlab.com/morikawa-lab-osakau/vibir-parallel-compute"
"https://github.com/souradipp76/ReadMeReady"
"https://github.com/GeomScale/volesti"
"https://github.com/open-and-sustainable/prismaid"
"https://github.com/funkyheatmap/funkyheatmap"
"https://github.com/BodeTobias/AutoPDEx"
"https://github.com/thelfer/mfem-mgis"
"https://github.com/souradipp76/MM-PoE"
"https://github.com/idaholab/MontePy"
"https://gitlab.ruhr-uni-bochum.de/ee/cd2es"
"https://github.com/daniloceano/CycloPhaser"
"https://github.com/wustat/rjaf"
"https://github.com/USEPA/peat"
"https://github.com/sbi-dev/sbi"
"https://github.com/kinleyid/tempodisco/"
"https://github.com/CastillonMiguel/phasefieldx"
"https://github.com/munich-quantum-toolkit/core"
"https://github.com/srigas/jaxkan"
"https://github.com/silkemaes/MACE"
"https://github.com/everval/LongMemory.jl"
"https://github.com/tvh0021/aweSOM"
"https://github.com/r-lib/lintr"
"https://github.com/berenslab/fundus_image_toolbox"
"https://github.com/ISISNeutronMuon/quickBayes"
"https://github.com/probml/dynamax"
"https://github.com/AncientNLP/potnia.git"
"https://github.com/solids4foam/solids4foam"
"https://github.com/madupite/madupite"
"https://github.com/usnistgov/imppy3d"
"https://github.com/Rhyd-Lewis/GCol"
"https://github.com/pyiron/executorlib"
"https://github.com/evanhockings/QuantumACES.jl"
"https://github.com/Jashcraf/katsu"
"https://github.com/sxs-collaboration/gwsurrogate"
"https://github.com/BerkeleyLab/caffeine"
"https://github.com/projectmesa/mesa"
"https://github.com/GalacticDynamics/unxt"
"https://github.com/henrikmelin/h3ppy"
"https://github.com/rahil-makadia/grss"
"https://github.com/alan-turing-institute/autoemulate"
"https://github.com/PRIDE-Archive/pridepy"
"https://github.com/lorenaacuna/GASTLI"
"https://github.com/AutoResearch/sweetbean"
"https://github.com/gouverneurp/eVAS/"
"https://github.com/qurit/rt-utils"
"https://github.com/enthusi/feline"
"https://github.com/JuliaHealth/NeuroAnalyzer.jl"
"https://github.com/Juke34/AliNe"
"https://github.com/youngkaneda/DemeterWatch"
"https://github.com/unfoldtoolbox/UnfoldSim.jl"
"https://github.com/samuelmurail/af_analysis"
"https://github.com/TeaspoonTDA/teaspoon"
"https://github.com/lucaskorol21/GO-RXR"
"https://github.com/tscnlab/LightLogR"
"https://github.com/mberto79/XCALibre.jl"
"https://github.com/nvanalfen/halotools"
"https://github.com/qiangyicheng/flory"
"https://github.com/weber1158/eds-classification"
"https://github.com/nppackages/lpcde"
"https://github.com/CITCOM-project/CausalTestingFramework"
"https://github.com/Cambridge-ICCS/FTorch"
"https://github.com/StevenGolovkine/FDApy"
"https://github.com/sintefore/TimeStruct.jl"
"https://github.com/JoshSchramm94/validateHOT"
"https://github.com/IslasGECI/nerd"
"https://github.com/tqsd/photon_weave"
"https://github.com/RWTH-EBC/AixWeather"
"https://github.com/Collab4exaNBody/exaDEM"
"https://github.com/SGpp/DisCoTec/"
"https://github.com/salbalkus/CausalTables.jl"
"https://github.com/rchartra/NcCut"
"https://github.com/MarkusPic/intensity_duration_frequency_analysis"
"https://github.com/ManuelRausch/StatConfR"
"https://github.com/ebi-jdispatcher/taxonomy-resolver"
"https://github.com/gacou54/pyorthanc"
"https://github.com/4DModeller/fdmr"
"https://github.com/DingshanDeng/ysoisochrone"
"https://github.com/UU-ER/AdOpT-NET0"
"https://github.com/QCUncertainty/sigma"
"https://github.com/ankushaggarwal/pymecht"
"https://github.com/deepskies/DeepBench/"
"https://github.com/iosefa/PyForestScan"
"https://github.com/Santiso-Group/despasito"
"https://github.com/instituteofmechanics/paraqus"
"https://github.com/camfort/fortran-src/"
"https://github.com/toruseo/UXsim"
"https://github.com/DLR-AMR/t8code"
"https://github.com/mxwalbert/cohesivm"
"https://gitlab.com/davidwoodburn/r3f"
"https://github.com/darrenjw/jax-smfsb"
"https://github.com/davidogara/hetGPy"
"https://github.com/ImperialCollegeLondon/PyProBE"
"https://www.github.com/ropensci/gigs"
"https://github.com/LebeerLab/tidytacos"
"https://github.com/OPM/pyopmspe11"
"https://github.com/bcgov/ssdtools"
"https://github.com/yuefan98/nleis.py"
"https://github.com/damask-multiphysics/DAMASK"
"https://github.com/wrenfold/wrenfold"
"https://github.com/voting-tools/pref_voting"
"https://github.com/NVlabs/scene_synthesizer"
"https://github.com/LidkeLab/matlab-instrument-control"
"https://github.com/CDCgov/BART-Survival"
"https://github.com/philip-long/robot_collision_checking"
"https://github.com/trixi-framework/TrixiParticles.jl"
"https://github.com/EHTJulia/ScatteringOptics.jl"
"https://github.com/hauselin/ollama-r"
"https://github.com/mongibellili/QuantizedSystemSolver.jl"
"https://github.com/cvs-health/langfair"
"https://github.com/danStich/dia"
"https://github.com/Stat-Cook/deident"
"https://github.com/WSWUP/gridwxcomp"
"https://github.com/FZJ-IEK3-VSA/FINE"
"https://github.com/homerjed/sbiax"
"https://github.com/hajimes/mmh3"
"https://github.com/wetransform-os/ProMCDA"
"https://github.com/C2SM-RCM/emiproc"
"https://github.com/sisl/ExpFamilyPCA.jl"
"https://github.com/bricoletc/delfies"
"https://github.com/unfoldtoolbox/UnfoldMakie.jl"
"https://github.com/harvard-nrg/dwiqc"
"https://github.com/GreycLab/gmic"
"https://github.com/sinanozaydin/pide"
"https://github.com/iterize/tenta"
"https://github.com/gadomski/antimeridian"
"https://github.com/xpsi-group/neost"
"https://github.com/PyLops/pylops-mpi"
"https://github.com/online-ml/deep-river"
"https://github.com/TomWagg/cogsworth"
"https://github.com/sodascience/metasyn"
"https://github.com/SevgiAkten/pycellga"
"https://github.com/COBRAPROsimulator/COBRAPRO"
"https://github.com/ks905383/xagg/"
"https://github.com/hippalectryon-0/pyloggrid"
"https://github.com/Novartis/torchsurv"
"https://github.com/ARC-OPT/wbc"
"https://github.com/mrilikecoding/StreamPoseML"
"https://github.com/kidusasfaw/spatPomp"
"https://github.com/gavinsimpson/gratia"
"https://github.com/rodoulak/Desalination-and-Brine-Treatment-Simulation-.git"
"https://github.com/AlanPearl/diffopt"
"https://github.com/markheckmann/OpenRepGrid"
"https://github.com/joboog/r2ogs6"
"https://github.com/xragua/xraybinaryorbit"
"https://github.com/smillerc/CurvilinearGrids.jl"
"https://github.com/tongzhouxu/mashpit"
"https://github.com/BlauGroup/RNMC"
"https://gitlab.dune-project.org/copasi/dune-copasi"
"https://github.com/JuBiotech/peak-performance/"
"https://github.com/QITI/pySLM2"
"https://github.com/trixi-framework/HOHQMesh"
"https://git.ufz.de/despot/pysewer/"
"https://github.com/quanted/esat"
"https://github.com/PyTomography/slicer_spect_recon.git"
"https://github.com/Magritte-code/pomme"
"https://github.com/NGSolve/ngsPETSc"
"https://github.com/GOMC-WSU/MoSDeF-dihedral-fit/"
"https://github.com/arfc/osier"
"https://github.com/Infineon/StreamGen"
"https://github.com/amisr/amisrsynthdata"
"https://github.com/PLN-team/pyPLNmodels.git"
"https://github.com/AutoResearch/autora-paper"
"https://github.com/kumiori/irrevolutions"
"http://github.com/cdjellen/ndbc-api"
"https://github.com/AthinaLange/CoastalLens"
"https://github.com/ORNL/dasp-stacker"
"https://github.com/dodge-research-group/thztools"
"https://github.com/dfki-ric/ugv_nav4d"
"https://github.com/vnmabus/rdata"
"https://github.com/anugrahjo/PySLSQP"
"https://github.com/dftd3/simple-dftd3"
"https://github.com/swiss-armed-forces/openburst"
"https://github.com/Wytamma/snk"
"https://github.com/VicidominiLab/BrightEyes-MCS"
"https://github.com/RemieJanssen/phylox"
"https://github.com/BleekerLab/PhenoFeatureFinder"
"https://github.com/PIK-LPJmL/lpjmlkit"
"https://github.com/Ciela-Institute/caustics"
"https://github.com/PFPE/shipgrav"
"https://gitlab.com/davidwoodburn/itrm"
"https://github.com/swiss-seismological-service/DUGseis"
"https://github.com/signalling-games-org/evoke"
"https://github.com/alixlam/fmristroke"
"https://github.com/IPESE/REHO"
"https://github.com/polca/pathways"
"https://github.com/LDEO-CREW/Pythonic-DISORT"
"https://github.com/Qile0317/APackOfTheClones"
"https://github.com/PSims/BayesEoR"
"https://github.com/LandSciTech/ccviR"
"https://github.com/Bios4Biol/intronSeeker"
"https://github.com/bobleesj/cifkit"
"https://github.com/lbr-stack/lbr_stack_doc"
"https://github.com/sharmalab/eaglescope"
"https://forgemia.inra.fr/migale/easy16s"
"https://github.com/precice/aste"
"https://github.com/sumn2u/annotate-lab"
"https://github.com/baiyueh/PANINIpy"
"https://github.com/amkrajewski/nimCSO"
"https://github.com/DavidLapous/multipers"
"https://github.com/ptaconet/modisfast"
"https://github.com/isce-framework/dolphin"
"https://github.com/ldliao/jointVIP"
"https://github.com/BirkhoffG/jax-relax/"
"https://github.com/timothyas/xesn"
"https://github.com/WaterFutures/EPyT-Flow"
"https://github.com/hugoledoux/startinpy"
"https://github.com/kellino/DiscreteEntropy.jl"
"https://github.com/alan-turing-institute/setvis"
"https://github.com/brainets/hoi"
"https://github.com/9505-PNNL/wmpy_power"
"https://github.com/meixichen/SpatialGEV"
"https://github.com/ShaunFell/GRBoondi"
"https://github.com/lanl/singularity-eos"
"https://github.com/konkolyseismolab/seismolab"
"https://github.com/JuliaGeodynamics/GeophysicalModelGenerator.jl"
"https://github.com/tvwenger/bayes_spec"
"https://github.com/FaaSr/FaaSr-package"
"https://github.com/OpenMD/OpenMD/"
"https://github.com/jonbmartin/pulpy"
"https://github.com/brocklab/pycashier"
"https://github.com/dominic-chang/Krang.jl"
"https://github.com/uw-comphys/openccm"
"https://github.com/retostauffer/python-colorspace"
"https://github.com/stingraysoftware/stingray"
"https://github.com/WilliamLwj/PyXAB"
"https://github.com/stegmaja/TSE"
"https://github.com/METHODS-Group/DRDMannTurb"
"https://github.com/NOSALRO/robot_dart"
"https://github.com/tinawunderlich/MultichannelGPR"
"https://github.com/OceanParcels/plasticparcels"
"https://github.com/manzt/anywidget"
"https://github.com/trchudley/pdemtools"
"https://github.com/athob/py-ananke"
"https://github.com/marccanby/linguiphyr/"
"https://github.com/gaelforget/MITgcm.jl"
"https://github.com/USEPA/harmonize-wq"
"https://github.com/BattModels/asimtools.git"
"https://github.com/lxvm/AutoBZ.jl"
"https://github.com/Brauckhoff/biopixR"
"https://github.com/adamantine-sim/adamantine"
"https://github.com/mendezVKI/MODULO"
"https://github.com/finsberg/gotranx"
"https://github.com/cau-se/ARCHES-PiCar-X"
"https://gitlab.com/free-astro/siril"
"https://github.com/duxfrederic/lightcurver"
"https://github.com/mprib/caliscope"
"https://github.com/cproctor/qualitative-coding"
"https://github.com/dtkerns/d2"
"https://github.com/GEOS-DEV/GEOS"
"https://github.com/IDEMSInternational/carbonr"
"https://github.com/JuliaAstro/EphemerisSources.jl"
"https://github.com/ckdckd145/statmanager-kr"
"https://github.com/FraunhoferIWES/iwopy"
"https://github.com/jabirali/bodge/"
"https://github.com/MillionConcepts/pdr"
"https://github.com/umami-hep/umami"
"https://gitlab.com/lheea/CN-AeroModels"
"https://github.com/nglm/pycvi"
"https://github.com/willyfh/visualtorch"
"https://gitlab.com/mauricemolli/petitRADTRANS"
"https://github.com/genotoul-bioinfo/Binette"
"https://github.com/MartianColonist/Cthulhu"
"https://github.com/gridap/GridapSolvers.jl"
"https://github.com/neurogeriatricskiel/NGMT"
"https://github.com/OFFIS-DAI/Mango.jl"
"https://github.com/aneeshnaik/lintsampler"
"https://github.com/RoryChenXY/DataRepExp_public"
"https://github.com/furrer-lab/abn"
"https://github.com/ruiying-ocean/cgeniepy"
"https://github.com/nathanaelbosch/ProbNumDiffEq.jl"
"https://github.com/ctkelley/MultiPrecisionArrays.jl"
"https://github.com/ekiefl/pooltool"
"https://github.com/JuliaGeometry/DelaunayTriangulation.jl"
"https://github.com/maps-as-data/MapReader"
"https://gitlab.com/MartinBeseda/sa-oo-vqe-qiskit.git"
"https://github.com/miriamkw/GluPredKit"
"https://gitlab.com/qc-devs/aqcnes"
"https://github.com/choosehappy/HoverFast"
"https://forgemia.inra.fr/pherosensor/pherosensor-toolbox"
"https://github.com/alchemistry/alchemlyb"
"https://github.com/daniloceano/LorenzCycleToolkit"
"https://github.com/mlysy/LocalCop"
"https://github.com/davidpagnon/Sports2D"
"https://github.com/CEA-MetroCarac/pystack3d"
"https://github.com/pierrepeterlongo/back_to_sequences/"
"https://github.com/jeetsukumaran/DendroPy"
"https://github.com/sblunt/orbitize"
"https://github.com/sisl/PyroRL"
"https://github.com/goualard-f/MicroFloatingPoints.jl.git"
"https://github.com/jranalli/solartoolbox"
"https://github.com/LukeDuttweiler/skipTrack"
"https://github.com/dr-joe-wirth/primerForge/"
"https://github.com/agerada/AIgarMIC"
"https://github.com/thorstone25/qups"
"https://github.com/scverse/anndata"
"https://github.com/palaeoware/trevosim/"
"https://github.com/sidiwang/snSMART"
"https://github.com/VU-IVM/VineCopulas"
"https://github.com/tribshms/tRIBS"
"https://github.com/RWTH-EBC/FiLiP"
"https://github.com/artefactory/choice-learn"
"https://github.com/flekschas/jupyter-scatter/"
"https://github.com/Jingxuan97/nemesispy"
"https://github.com/Battery-Intelligence-Lab/dtw-cpp"
"https://github.com/annagraff/densify"
"https://github.com/jacob-long/jtools"
"https://github.com/marberts/piar"
"https://github.com/SciML/DataInterpolations.jl"
"https://github.com/opnavlab/sonic"
"https://gricad-gitlab.univ-grenoble-alpes.fr/deformvis/insarviz"
"https://github.com/GeodynamicWorldBuilder/WorldBuilder/"
"https://github.com/ropensci/osmapiR"
"https://github.com/ben-cassese/squishyplanet"
"https://github.com/radicamc/exoTEDRF"
"https://github.com/mzkhalid039/DWBuilder"
"https://github.com/OpenEnergyPlatform/open-MaStR"
"https://github.com/WhaleConnect/whaleconnect"
"https://github.com/EdgeVPNio/evio"
"https://github.com/opengeos/HyperCoast"
"https://github.com/Aminsinichi/wearable-hrv/"
"https://github.com/Clinical-Genomics-Umea/fraggler"
"https://github.com/karllark/dust_extinction"
"https://github.com/openneuropet/PET2BIDS/"
"https://github.com/mdtanker/polartoolkit"
"https://github.com/akinremisa/rfsed"
"https://github.com/simpeg/aurora"
"https://github.com/project-asgard/asgard"
"https://github.com/GOBLIN-Proj/goblin_lite"
"https://github.com/ropensci/rOPTRAM"
"https://github.com/VegeWaterDynamics/motrainer"
"https://github.com/elsoroka/Satisfiability.jl"
"https://github.com/bjmt/universalmotif"
"https://github.com/BlueBrain/BlueCelluLab"
"https://github.com/aadya940/chainopy"
"https://github.com/bessagroup/f3dasm"
"https://github.com/padster/pyNeuroTrace"
"https://github.com/bbye98/mdcraft"
"https://github.com/ec-jrc/nrt"
"https://github.com/samwaseda/mamonca"
"https://github.com/automl/amltk"
"https://github.com/NERDSITU/superblockify"
"https://github.com/lahovniktadej/gatree"
"https://github.com/arjunsavel/cortecs"
"https://github.com/koide3/small_gicp"
"https://github.com/HinodeXRT/xrtpy"
"https://github.com/Exo-TiC/ExoTiC-LD"
"https://github.com/BrownDwarf/gollum"
"https://github.com/EdwardBerman/shopt"
"https://github.com/COSIMA/regional-mom6/"
"https://github.com/CodeEagle22/SIRITVIS/"
"https://github.com/NERC-CEH/RMAVIS"
"https://github.com/suchanek/proteusPy"
"https://github.com/fladd/ScanSessionTool"
"https://github.com/flatironinstitute/cppdlr/"
"https://github.com/fairdataihub/SODA-for-SPARC"
"https://github.com/Mavrogiannis-Ioannis/dsmmR"
"https://github.com/AkchurinDA/Fortuna.jl"
"https://github.com/ORNL/Equilipy"
"https://github.com/paucablop/chemotools"
"https://github.com/mrazomej/AutoEncoderToolkit.jl"
"https://github.com/AtrCheema/SeqMetrics"
"https://github.com/cmgcds/fastvpinns"
"https://github.com/IonRepo/IonDiff"
"https://github.com/xianggebenben/GraphSL"
"https://github.com/slimgroup/InvertibleNetworks.jl"
"https://github.com/mjcarley/nbi/"
"https://github.com/hippylib/soupy"
"https://github.com/USEPA/SSN2"
"https://github.com/hydroframe/hf_hydrodata"
"https://github.com/CLIMADA-project/climada_python"
"https://github.com/tsipkens/atems"
"https://github.com/TommyJones/tidylda"
"https://github.com/markblokpoel/mathlib"
"https://github.com/mnets/pymnet"
"https://github.com/Sm00thix/IKPLS"
"https://github.com/Cloud-Drift/clouddrift"
"https://github.com/CM2S/piglot"
"https://github.com/Quantum-Optics-LKB/NLSE"
"https://github.com/votca/votca"
"https://github.com/AStcherbinine/omegapy"
"https://github.com/EhsanGharibNezhad/TelescopeML"
"https://gitlab.com/open-darts/open-darts"
"https://github.com/oncoray/mirp"
"https://github.com/jcorbino/mole"
"https://github.com/b-pardi/BraTaDio"
"https://github.com/m-d-grunnill/MetaCast"
"https://github.com/hydroframe/subsettools"
"https://github.com/amberbiology/scribl"
"https://github.com/dms-viz/dms-viz.github.io"
"https://github.com/yotarazona/scikit-eo"
"https://github.com/Moore-Institute-4-Plastic-Pollution-Res/One4All"
"https://github.com/nathanReitinger/CART"
"https://github.com/New-Horizons-SPM/scanbot"
"https://github.com/limengbinggz/ddtlcm"
"https://github.com/ForsbergPyschometrics/D3mirt"
"https://github.com/FAST-LB/pyGCodeDecode"
"https://github.com/darthoctopus/reggae"
"https://github.com/JuliaDynamics/TransitionsInTimeseries.jl"
"https://github.com/thiago-glissoi/FFF-Line-Segmentation"
"https://github.com/uwsbel/low-fidelity-dynamic-models"
"https://github.com/pfeinsper/drone-swarm-search"
"https://github.com/VasuLab/rgfrosh"
"https://github.com/nimble-dev/nimbleHMC"
"https://github.com/SERVIR/servir-aces"
"https://github.com/PennyLaneAI/catalyst"
"https://github.com/nci/scores/"
"https://gitlab.com/dlr-ve/esy/remix/framework"
"https://github.com/juanmc2005/StreamingSpeakerDiarization"
"https://github.com/heli-xu/findSVI"
"https://github.com/nedtaylor/athena"
"https://github.com/nipy/heudiconv/"
"https://github.com/IBM/topography-searcher"
"https://github.com/JIBSIL/DistriFS"
"https://github.com/SatelliteShorelines/CoastSeg"
"https://github.com/extendr/extendr"
"https://github.com/jeertmans/DiffeRT2d"
"https://github.com/xCDAT/xcdat"
"https://github.com/UM-KevinHe/surtvep"
"https://gitlab.com/libreumg/dataquier.git"
"https://github.com/sourmash-bio/sourmash"
"https://github.com/jeancmaia/mcglm"
"https://github.com/seisman/HinetPy"
"https://github.com/ericfell/rfbzero"
"https://github.com/hypre-space/hypredrive"
"https://github.com/canimus/cuallee"
"https://github.com/david-mathews-1994/deltarice"
"https://github.com/PdIPS/CBX"
"https://github.com/NIFTy-PPL/JAXbind"
"https://github.com/CompNet/Renard"
"https://github.com/actris-cloudnet/mwrpy"
"https://github.com/baxmittens/OpenGeoSysUncertaintyQuantification.jl"
"https://github.com/mathopt/DynamicOED.jl"
"https://github.com/soundata/soundata"
"https://github.com/nifty-ppl/nifty"
"https://github.com/MayaWaves/mayawaves"
"https://github.com/m-dadej/MarSwitching.jl"
"https://github.com/sntioudis/papreca"
"https://github.com/RAMP-project/RAMP"
"https://github.com/LeoEgidi/pivmet"
"https://github.com/cblearn/cblearn"
"https://github.com/bigraph-toolkit-suite/bigraphs.grgen-bigraphs"
"https://github.com/spjuhel/BoARIO"
"https://github.com/vidarsko/ComFiT"
"https://github.com/edsonportosilva/OptiCommPy/"
"https://github.com/mei-friend/mei-friend"
"https://github.com/groupmm/libsoni"
"https://github.com/Simulation-Decomposition/simdec-python"
"https://github.com/GRChombo/GRFolres"
"https://github.com/kyleaoman/martini"
"https://github.com/aikubo/LinkingLines"
"https://github.com/SpeedyWeather/SpeedyWeather.jl"
"https://github.com/ropensci/weatherOz"
"https://github.com/IMMM-SFA/naturf.git"
"https://github.com/nasa/ncompare"
"https://github.com/tne-lab/py-behav-box-v2"
"https://github.com/ialbert/genescape-central"
"https://github.com/tldr-group/samba-web"
"https://github.com/hkabbech/TrackSegNet"
"https://github.com/OpenTerrace/openterrace-python"
"https://github.com/sportiellomike/mousebreedeR"
"https://github.com/felixludos/omni-fig"
"https://github.com/powerapi-ng/powerapi"
"https://gitlab.com/mantik-ai/mantik"
"https://github.com/devosoft/Empirical/"
"https://github.com/BlackHolePerturbationToolkit/KerrGeoPy"
"https://github.com/esa/polyhedral-gravity-model"
"https://github.com/MichielsenM/FOAM"
"https://github.com/Jammy2211/PyAutoCTI"
"https://github.com/LLNL/echemfem"
"https://github.com/dfki-ric/movement_primitives/"
"https://github.com/thraraujo/pysymmpol"
"https://github.com/quantum-exeter/SpiDy.jl"
"https://github.com/SpectraCollab/ORMIR_XCT"
"https://github.com/JGCRI/tethys"
"https://github.com/Alexander-Barth/NCDatasets.jl"
"https://github.com/dankelley/whalestrike"
"https://gitlab.com/cmbm-ethz/pourbaix-diagrams"
"https://github.com/labsyspharm/scimap"
"https://github.com/1oly/AeroAcoustics.jl"
"https://github.com/Tpatni719/gsMAMS.git"
"https://github.com/flatironinstitute/neurosift"
"https://github.com/FixOurFood/AgriFoodPy/"
"https://github.com/ossmith/HARE"
"https://github.com/sparks-baird/matbench-genmetrics"
"https://github.com/iniyannatarajan/Anime.jl"
"https://github.com/sterinaldi/FIGARO"
"https://github.com/ThibaultFillion/strengths"
"https://github.com/mcgalcode/pylattica"
"https://github.com/SMTG-Bham/ThermoParser"
"https://github.com/NicOudart/PyBWE"
"https://github.com/WSWUP/agweather-qaqc"
"https://github.com/soilwater/crnpy"
"https://github.com/bandframework/Taweret.git"
"https://github.com/CoLRev-Environment/bib-dedupe"
"https://github.com/UncertainLab/Enlsip.jl.git"
"https://github.com/ropensci/fellingdater"
"https://github.com/obss/jury"
"https://github.com/lsandig/Kirstine.jl"
"https://github.com/LeeoBianchi/HealpixMPI.jl"
"https://github.com/EnergyModelsX/EnergyModelsBase.jl"
"https://github.com/RadioAstronomySoftwareGroup/pyradiosky"
"https://github.com/Bioinformatics-Munich/scas_dashboard"
"https://github.com/JGCRI/stitches"
"https://github.com/AnkitBarik/planetMagFields"
"https://github.com/rasg-affiliates/21cmSense"
"https://github.com/GalagaBits/JWST-FGS-Spelunker"
"https://github.com/nicokurtovic/SIMIO"
"https://github.com/p-slash/qsonic"
"https://github.com/cnellington/Contextualized"
"https://github.com/MFaymon/spINAR"
"https://github.com/CliMA/CalibrateEmulateSample.jl"
"https://github.com/PhysicsOfMobility/ridepy"
"https://github.com/PetrKorab/Arabica"
"https://github.com/cvjena/JeFaPaTo"
"https://github.com/neuroanatomy/thresholdmann"
"https://github.com/FZJ-IEK3-VSA/ETHOS_PeNALPS"
"https://github.com/jepegit/cellpy"
"https://github.com/BRAIN-TO/GIRFReco.jl"
"https://github.com/GrainLearning/grainLearning"
"https://github.com/jorgensd/adios4dolfinx"
"https://github.com/dshawul/NebulaSEM"
"https://gitlab.eudat.eu/coccon-kit/proffastpylot"
"https://github.com/KennethEnevoldsen/augmenty"
"https://github.com/DamynChipman/EllipticForest"
"https://github.com/range-et/PGL"
"https://github.com/IMMM-SFA/statemodify"
"https://github.com/equitable-equations/fqar"
"https://github.com/arup-group/pam"
"https://github.com/JGCRI/gcamfaostat"
"https://github.com/bc3LC/gcamreport"
"https://github.com/David-McKenna/udpPacketManager/"
"https://github.com/tberlok/paicos"
"https://github.com/Cosmoglobe/zodipy"
"https://github.com/robbievanleeuwen/section-properties"
"https://github.com/mikejohnson51/AHGestimation/"
"https://github.com/musoke/UltraDark.jl"
"https://github.com/SMTG-Bham/doped"
"https://github.com/CEA-MetroCarac/fitspy"
"https://github.com/tesselle/aion"
"https://github.com/ABSESpy/ABSESpy"
"https://github.com/CEMeNT-PSAAP/MCDC"
"https://github.com/KenethGarcia/ClassiPyGRB"
"https://github.com/caimeng2/seesus"
"https://github.com/GRChombo/GRDzhadzha.git"
"https://github.com/solislemuslab/minaa"
"https://github.com/Toloka/crowd-kit"
"https://github.com/desResLab/LINFA"
"https://github.com/gdalle/HiddenMarkovModels.jl"
"https://github.com/newcleo-dev-team/lbh15"
"https://github.com/ClapeyronThermo/GCIdentifier.jl"
"https://github.com/Qepanna/goFlux"
"https://github.com/MREYE-LUMC/ZOSPy"
"https://bitbucket.org/robmoss/particle-filter-for-python/"
"https://github.com/oleksulkowski/Syn-CpG-Spacer"
"https://github.com/TRACER-LULab/Hyperelastics.jl"
"https://gitlab.com/mauricemolli/petitRADTRANS"
"https://github.com/nla-group/fABBA"
"https://github.com/hendr1km/dropout"
"https://github.com/Yu-Group/simChef"
"https://github.com/shaelebrown/TDApplied"
"https://github.com/Pometry/Raphtory"
"https://github.com/tkchafin/autostreamtree"
"https://github.com/AndresRTejedor/Mold"
"https://github.com/HofstadterTools/HofstadterTools"
"https://gitlab.com/bonsamurais/bonsai/util/ipcc"
"https://github.com/rkingsbury/pyEQL"
"https://github.com/ropensci/quadkeyr"
"https://github.com/kdm9/Acanthophis"
"https://github.com/calebweinreb/SNUB"
"https://codebase.helmholtz.cloud/mussel/netlogo-northsea-species.git"
"https://github.com/firedrakeproject/checkpoint_schedules"
"https://github.com/Open-Minds-Lab/MRdataset"
"https://github.com/suneeshjacob/ACRoD"
"https://github.com/frank1010111/pywaterflood"
"https://github.com/UTEL-UIUC/gtfs_segments"
"https://github.com/ahudde/greeks"
"https://github.com/uw-comphys/shapelets"
"https://github.com/JuliaAI/Imbalance.jl"
"https://github.com/MedMaxLab/selfEEG"
"https://github.com/seamplex/feenox/"
"https://github.com/FabianPlum/OmniTrax"
"https://github.com/RJArthern/WAVI.jl"
"https://github.com/NSAPH-Software/GPCERF"
"http://github.com/pylops/pyproximal/"
"https://github.com/chadagreene/Tide-Model-Driver"
"https://github.com/FAU-LAP/NOMAD-CAMELS"
"https://github.com/moritzobenauer/ProjectRaccoon"
"https://github.com/pnnl/HyperNetX"
"https://github.com/devnums/pyheartlib"
"https://github.com/konfound-project/konfound"
"https://github.com/markur4/plotastic"
"https://github.com/thieu1995/permetrics"
"https://github.com/benlansdell/ethome"
"https://github.com/vergauwenthomas/MetObs_toolkit"
"https://github.com/AlexanderJuestel/pyheatdemand"
"https://github.com/pyro-kinetics/pyrokinetics"
"https://gitlab.com/materials-modeling/calorine"
"https://github.com/spinjet/pdopt-code"
"https://github.com/worlddynamics/WorldDynamics.jl"
"https://github.com/Oden-EAG/hp3d"
"https://github.com/DIDSR/DICaugment"
"https://github.com/mindearth/mobilkit"
"https://github.com/tum-pbs/PhiML"
"https://gitlab.com/cosapp/cosapp"
"https://github.com/nansencenter/DAPPER"
"https://github.com/zhanghe9704/tpsa"
"https://github.com/acerbilab/pybads"
"https://github.com/BPSB/combine-p-values-discrete"
"https://github.com/lrnv/Copulas.jl"
"https://github.com/dirmeier/surjectors"
"https://github.com/a-renzini/pygwb/"
"https://github.com/cbyrohl/scida"
"https://github.com/JaGeo/LobsterPy"
"https://github.com/beardymcjohnface/Koverage"
"https://github.com/DeepRank/deeprank2"
"https://github.com/dynamicslab/pykoopman"
"https://github.com/R-Computing-Lab/BGmisc/"
"https://github.com/chenyangkang/stemflow"
"https://github.com/Pecnut/stokesian-dynamics"
"https://github.com/JGCRI/helios"
"https://gitlab.com/akantu/akantu"
"https://github.com/fieldtrip/fieldtrip"
"https://github.com/FrederikLizakJohansen/DebyeCalculator"
"https://github.com/bjmorgan/kinisi/"
"https://github.com/CHOP-CGTInformatics/REDCapTidieR"
"https://github.com/cremerlab/hplc-py"
"https://github.com/kuadrat/growR"
"https://github.com/idaholab/moose"
"https://github.com/WMD-group/PyTASER"
"https://github.com/czimm79/MicroTracker.jl"
"https://github.com/lskatz/fasten"
"https://gitlab.com/tue-umphy/software/parmesan"
"https://gitlab.com/tum-ciip/elsa"
"https://github.com/DavAug/chi"
"https://github.com/Mmasoud1/HistoJS"
"https://github.com/demonico85/cleaving"
"https://github.com/CODES-group/opyrability"
"https://github.com/jbferet/prospect"
"https://github.com/pprachas/fenics_arclength"
"https://github.com/alejandrojuria/tightbinder"
"https://github.com/tdep-developers/tdep"
"https://github.com/mpl-extensions/mpl-interactions"
"https://github.com/linuxscout/tashaphyne/"
"https://github.com/misken/hillmaker"
"https://github.com/soft-matter-theory-at-icmab-csic/chitin_builder"
"https://github.com/libAtoms/matscipy"
"https://github.com/RECeSS-EU-Project/stanscofi/"
"https://github.com/viash-io/viash"
"https://github.com/sonoUnoTeam/sonoUno-desktop"
"https://github.com/matthias-mayr/Cartesian-Impedance-Controller"
"https://gitlab.com/jtagusari/hrisk-noisemodelling"
"https://github.com/pyroll-project/pyroll-core"
"https://github.com/MLMI2-CSSI/foundry"
"https://github.com/jakelangham/kestrel/"
"https://github.com/akikuno/cstag"
"https://github.com/materialsproject/pymatgen-analysis-defects"
"https://github.com/BohndiekLab/patato"
"https://github.com/illinois-or-research-analytics/cm_pipeline.git"
"https://github.com/zillow/quantile-forest"
"https://github.com/muellerj2/netroles"
"https://github.com/mendezVKI/SPICY_VKI"
"https://github.com/marchirschvogel/ambit"
"https://github.com/daniellerch/aletheia"
"https://github.com/SMTG-UCL/easyunfold"
"https://github.com/LiBuchauer/cellanneal"
"https://github.com/ropensci/dwctaxon"
"https://github.com/PhysioLabXR/PhysioLabXR"
"https://github.com/DIDSR/WebXR-tools.git"
"https://github.com/kstenio/libssa/"
"https://github.com/gbouras13/dnaapler"
"https://github.com/umr-amap/StormR"
"https://github.com/EnergyEconomyDecoupling/CL-PFU-JOSS-Paper"
"https://github.com/OpenDebates/openskill.py"
"https://github.com/rajarshi008/Scarlet"
"https://github.com/unige-geohealth/inAccessMod"
"https://github.com/chnm/Datascribe-module"
"https://github.com/materialsproject/jobflow"
"https://github.com/HRDAG/verdata"
"https://github.com/QuantEcon/QuantEcon.py"
"https://github.com/tuomaseerola/onsetsync"
"https://github.com/castelao/GSW-rs"
"https://github.com/nicrie/xeofs"
"https://github.com/pvlib/pvlib-python"
"https://github.com/CederGroupHub/sparse-lm"
"https://github.com/OSeMOSYS/otoole"
"https://github.com/MaceKuailv/seaduck"
"https://github.com/adrientaudiere/MiscMetabar"
"https://github.com/parafields/parafields"
"https://github.com/Libensemble/libensemble"
"https://github.com/NSAPH-Software/CRE"
"https://github.com/cmelab/flowerMD"
"https://github.com/jonescompneurolab/hnn-core"
"https://github.com/samirmartins/pydaq"
"https://github.com/lys-devel/lys"
"https://gitlab.com/robizzard/libcdict"
"https://github.com/the-rccg/hw2d"
"https://github.com/pudu-py/pudu"
"https://github.com/anderslogg/geco"
"https://github.com/sebastien-plutniak/archeoviz"
"https://github.com/UNSW-CEEM/NEMSEER"
"https://github.com/akashdhruv/BoxKit"
"https://github.com/OpenWaterAnalytics/EPyT/"
"https://github.com/CyclotronResearchCentre/bidsme"
"https://github.com/jrkerns/pylinac"
"https://github.com/LMBooth/pybci"
"https://github.com/HoBeZwe/SphericalScattering.jl"
"https://github.com/NeotomaDB/neotoma2"
"https://github.com/2decomp-fft/2decomp-fft.git"
"https://github.com/NLESC-JCER/QMCTorch"
"https://github.com/r3w0p/bobocep"
"https://gitlab.com/habermann_lab/phasik"
"https://github.com/introlab/opentera"
"https://github.com/espnet/espnet"
"https://github.com/scikit-tda/DREiMac"
"https://github.com/sandialabs/pvOps"
"https://bitbucket.org/sbarbot/motorcycle/src/master/"
"https://github.com/orbisgis/lczexplore"
"https://github.com/spiketools/spiketools"
"https://github.com/Valires/er-evaluation"
"https://github.com/ToyotaCRDL/mahos"
"https://github.com/dieghernan/tidyterra"
"https://github.com/JustinYKC/FEPOPS"
"https://github.com/changliao1025/pyflowline"
"https://github.com/precice/micro-manager"
"https://github.com/MikeSWang/Triumvirate"
"https://github.com/wjakethompson/measr"
"https://github.com/JacksonBurns/astartes"
"https://github.com/blind-contours/SuperNOVA"
"https://github.com/IlianPihlajamaa/ModeCouplingTheory.jl"
"https://github.com/kjschmidlab/GGoutlieR"
"https://github.com/AMReX-Combustion/PeleLMeX"
"https://github.com/damar-wicaksono/uqtestfuns"
"https://github.com/nmfs-fish-tools/ssmse"
"https://github.com/jet-net/JetNet"
"https://github.com/SCIInstitute/UncertainSCI"
"https://github.com/hyosubkim/bayes-toolbox"
"https://github.com/ORNL/curifactory"
"https://github.com/gmrandazzo/libscientific"
"https://github.com/mgcooper/baseflow"
"https://github.com/LTLA/gesel.js"
"https://github.com/Qiskit-Extensions/qiskit-dynamics"
"https://github.com/MJCliffe/PASCal"
"https://github.com/uab-cgds-worthey/quac"
"https://github.com/ReSurfEMG/ReSurfEMG"
"https://gitlab.com/soleil-data-treatment/soleil-software-projects/remote-desktop"
"https://github.com/RangamaniLabUCSD/smart"
"https://github.com/jhayer/baargin"
"https://github.com/OrchardLANL/DPFEHM.jl"
"https://github.com/dglaeser/gridformat"
"https://github.com/copasi/basico"
"https://github.com/phpuech/OT_Analysis"
"https://github.com/nomad-coe/nomad"
"https://github.com/FRBCesab/chessboard"
"https://github.com/tenemark/mikecalsetup"
"https://github.com/rikhuijzer/SIRUS.jl"
"https://github.com/rempsyc/lavaanExtra"
"https://github.com/profminton/swiftest"
"https://github.com/tomkimpson/RelativisticDynamics.jl"
"https://github.com/ortk95/planetmapper"
"https://github.com/caleb531/automata"
"https://github.com/jungtaekkim/bayeso"
"https://github.com/nokaut/wsknn"
"https://github.com/braiNEdarwin/brains-py"
"https://gitlab.com/bioeconomy/forobs/biotrade/"
"https://github.com/OceanBioME/OceanBioME.jl"
"https://github.com/clreda/NORDic"
"https://github.com/UofUEpiBio/epiworldR"
"https://github.com/tobin-wainer/elk"
"https://github.com/nomad-coe/greenX"
"https://github.com/IceKhan13/purplecaffeine"
"https://github.com/eyra/port"
"https://github.com/TensorBFS/TensorInference.jl"
"https://github.com/LidkeLab/smite"
"https://github.com/uab-cgds-worthey/rosalution"
"https://github.com/matthewcarbone/GGCE"
"https://github.com/diningphil/PyDGN/"
"https://github.com/code4sac/trash-ai"
"https://github.com/ropensci/concstats"
"https://github.com/arnauqb/blackbirds"
"https://github.com/beniaminogreen/zoomerjoin"
"https://github.com/JuliaSmoothOptimizers/Krylov.jl"
"https://github.com/mrsonandrade/pyswarming"
"https://github.com/ExObsSim/ExoRad2-public"
"https://github.com/ifilot/bramble"
"https://github.com/bernadette-eu/Bernadette"
"https://github.com/JeremyGelb/geocmeans"
"https://github.com/thorek1/MacroModelling.jl"
"https://github.com/sunpy/ndcube"
"https://github.com/yupidevs/pactus"
"https://github.com/arviz-devs/preliz"
"https://github.com/stefanradev93/BayesFlow"
"https://github.com/NREL/G2Aero"
"https://github.com/bioAI-Oslo/Spikeometric"
"https://github.com/jacobblum/simDRIFT"
"https://github.com/SESMG/SESMG"
"https://github.com/pysersic/pysersic"
"https://github.com/Sydney-Informatics-Hub/geodata-harvester"
"https://gitlab.com/pythia-uq/pythia"
"https://github.com/atzberg/mlmod"
"https://github.com/CMakePP/CMakePPLang/"
"https://github.com/pnsaevik/effluent"
"https://github.com/APGG-Lab/APGG"
"https://github.com/opengeos/segment-geospatial"
"https://github.com/auctus-team/pycapacity"
"https://github.com/CQCL/qujax"
"https://github.com/powerfulbean/mTRFpy"
"https://github.com/bwheelz36/ParticlePhaseSpace"
"https://github.com/cumbof/hdlib"
"https://github.com/DOE-NCI-MOSSAIC/FrESCO"
"https://github.com/fmicompbio/einprot"
"https://github.com/NETL-RIC/URC-Assessment-Method"
"https://github.com/henrikdvn/CRSocket"
"https://github.com/palaeoware/revosim"
"https://github.com/jbussemaker/SBArchOpt"
"https://github.com/miniufo/xinvert"
"https://github.com/Degiacomi-Lab/molearn"
"https://github.com/kanaverse/kana"
"https://github.com/martinfleis/clustergram"
"https://github.com/PieterjanRobbe/GaussianRandomFields.jl"
"https://github.com/upb-lea/ElectricGrid.jl"
"https://github.com/leapigufpb/FuzzyClass/"
"https://github.com/MrShoenel/metrics-as-scores"
"https://github.com/geoelements/gns"
"https://github.com/ethicsai/ethical-smart-grid"
"https://github.com/rikenbit/dcTensor"
"https://github.com/snek5000/snek5000"
"https://github.com/occupationMeasurement/occupationMeasurement"
"https://github.com/JPenuchot/ctbench"
"https://gitlab.com/chaver/choco-mining"
"https://github.com/sciris/sciris"
"https://github.com/q1cui/discourseGT"
"https://github.com/johentsch/ms3"
"https://github.com/julianreul/mode_behave"
"https://github.com/frank1010111/bluebonnet/"
"https://github.com/BobAubouin/Python_Anesthesia_Simulator"
"https://github.com/PyPO-dev/PyPO"
"https://github.com/EpiVec/TDLM"
"https://github.com/TRI-AMDD/GMP-featurizer/"
"https://github.com/lucianolorenti/ceruleo"
"https://github.com/aymgal/COOLEST"
"https://github.com/pmlmodelling/nctoolkit"
"https://github.com/tldr-group/taufactor"
"https://github.com/SeaIce-Math/SubZero"
"https://github.com/PetervanLunteren/AddaxAI"
"https://github.com/souzamonteiro/cnatool"
"https://github.com/korem-lab/pymgpipe"
"https://github.com/NEFSC/READ-PSB-LWT-narwss_rwsas_apps"
"https://github.com/RLado/ViMag"
"https://github.com/bessagroup/CRATE"
"https://github.com/AI-multimodal/Lightshow"
"https://github.com/ulissigroup/amptorch"
"https://github.com/auggiemarignier/pxmcmc"
"https://github.com/ralna/GALAHAD"
"https://github.com/rempsyc/rempsyc/"
"https://github.com/roualdes/bridgestan"
"https://github.com/carlodev/SyntheticEddyMethod.jl"
"https://github.com/codemeleon/seqPanther"
"https://github.com/mpi4py/shmem4py"
"https://github.com/mathLab/PINA"
"https://github.com/mdolab/pygeo"
"https://github.com/paulbrodersen/netgraph/"
"https://github.com/QuaCaTeam/quaca"
"https://gitlab.com/dlr-ve/esy/sfctools/framework/"
"https://github.com/geodynamics/burnman"
"https://github.com/taxprofiler/taxpasta"
"https://github.com/Extraweich/homopy"
"https://gitlab.com/sigcorr/sigcorr"
"https://github.com/rikenbit/iTensor"
"https://github.com/nasa/prog_models"
"https://github.com/amiralih/MembraneAnalysis.jl"
"https://github.com/ifilot/edp"
"https://github.com/EGaraldi/corecon"
"https://github.com/Ayuei/DeBEIR"
"https://github.com/pyamg/pyamg"
"https://github.com/JorenSix/Olaf"
"https://github.com/erf-model/ERF"
"https://gitlab.com/ENKI-portal/ThermoCodegen"
"https://github.com/UM-PEPL/HallThruster.jl"
"https://github.com/SchmidtDSE/afscgap"
"https://github.com/FraunhoferIWES/foxes"
"https://github.com/FZJ-PGI-12/QAOA.jl"
"https://github.com/itpplasma/GORILLA"
"https://github.com/jackmwolf/tehtuner"
"https://github.com/VirtualPlantLab/PlantSimEngine.jl"
"https://github.com/pyplati/platipy"
"https://github.com/LCAV/LenslessPiCam"
"https://github.com/kcglab/satllazero"
"https://github.com/mdhaber/scipy"
"https://github.com/VincentStimper/normalizing-flows"
"https://github.com/jrzaurin/pytorch-widedeep"
"https://github.com/ArcticSnow/TopoPyScale"
"https://gitlab.com/drti/basic-tools"
"https://github.com/pedersen-fisheries-lab/sspm"
"https://github.com/HKUST-OCTAD-LAB/AirTrafficSim"
"https://github.com/ttricco/sarracen"
"https://github.com/jamesuanhoro/minorbsem"
"https://github.com/acerbilab/pyvbmc"
"https://github.com/EdyVision/pii-codex"
"https://gitlab.inria.fr/melissa/melissa"
"https://github.com/polycfd/apecss"
"https://github.com/ajakef/gemlog"
"https://github.com/fruzsinaagocs/riccati"
"https://github.com/simonrp84/PyCoxMunk"
"https://github.com/computational-psychology/stimupy"
"https://github.com/hexatomic/hexatomic"
"https://github.com/LyceanEM/LyceanEM-Python"
"https://github.com/mlfpm/deepof"
"https://github.com/Blue-Matter/RPC"
"https://github.com/hjkgrp/SESAMI_web"
"https://github.com/cbrnr/sleepecg"
"https://github.com/GEUS-Glaciology-and-Climate/pypromice"
"https://github.com/dtcc-platform/dtcc-builder"
"https://github.com/simple-crypto/SCALib"
"https://github.com/isakro/shoredate"
"https://github.com/nliulab/HRnV-Calc"
"https://github.com/ByrumLab/proteoDA"
"https://gitlab.com/binary_c/binary_c-python/"
"https://github.com/USNavalResearchLaboratory/eispac"
"https://github.com/highamm/sptotal"
"https://github.com/JGCRI/osiris"
"https://github.com/moldyn/msmhelper"
"https://github.com/Sarc-Graph/sarcgraph"
"https://github.com/spglib/spgrep"
"https://github.com/chombo-discharge/chombo-discharge"
"https://github.com/KVSlab/VaMPy"
"https://github.com/Ouranosinc/xclim"
"https://github.com/WBK-Robotics/pybullet_industrial"
"https://gitlab.com/pvst/asi"
"https://github.com/ComplexGroupInteractions/xgi"
"https://github.com/webbjj/clustertools"
"https://github.com/alawryaguila/multi-view-AE"
"https://github.com/tibordome/cosmic_profiles"
"https://github.com/AngryMaciek/hypercomplex"
"https://github.com/nialov/fractopo"
"https://github.com/smith-tinkerlab/repytah"
"https://github.com/graphnet-team/graphnet"
"https://github.com/elliohow/fMRI_ROI_Analysis_Tool"
"https://github.com/jspsych/jspsych"
"https://github.com/julie-forman-kay-lab/SPyCi-PDB"
"https://github.com/harrispopgen/mutyper"
"https://github.com/trichter/yam"
"https://github.com/AgrDataSci/climatrends"
"https://plmlab.math.cnrs.fr/lmrs/statistique/smmR"
"https://github.com/muctadir/lama"
"https://github.com/mwalmsley/zoobot"
"https://github.com/PoliUniLu/cora"
"https://gitlab.com/cosmograil/starred"
"https://github.com/prashjet/popkinmocks"
"https://github.com/fzi-forschungszentrum-informatik/TSInterpret"
"https://github.com/exciting/excitingtools"
"https://github.com/PaulRitsche/DLTrack"
"https://github.com/schochastics/graphlayouts"
"https://github.com/konradhoeffner/hdt"
"https://github.com/tum-esm/pyra"
"https://github.com/pyvisa/pyvisa"
"https://github.com/HLasse/TextDescriptives"
"https://github.com/parallelwindfarms/byteparsing"
"https://github.com/tupui/scipy"
"https://github.com/aksholokhov/pysr3"
"https://github.com/rikenbit/nnTensor"
"https://github.com/PyPSA/linopy"
"https://github.com/Cascella-Group-UiO/HyMD"
"https://github.com/gpantel/MolPainter/"
"https://github.com/jeremiah-corrado/fem_2d"
"https://git.ligo.org/asimov/asimov"
"https://github.com/astro-informatics/sleplet"
"https://github.com/biaslab/RxInfer.jl"
"https://github.com/tornede/py_experimenter"
"https://github.com/linuxscout/pyarabic"
"https://github.com/Qiskit/qiskit-experiments"
"https://github.com/earth-chris/elapid"
"https://github.com/open-atmos/PySDM"
"https://github.com/panagiotisanagnostou/HiPart"
"https://github.com/stsievert/salmon/"
"https://gitlab.com/fame-framework/fame-core"
"https://gitlab.com/fame-framework/fame-io"
"https://gitlab.com/dlr-ve/esy/amiris/amiris"
"https://github.com/MDAnalysis/solvation-analysis"
"https://github.com/trygvrad/DF-XRM_viz"
"https://github.com/ropensci/PostcodesioR"
"https://github.com/vocalpy/crowsetta"
"https://github.com/icesat2py/icepyx"
"https://github.com/Yingjie4Science/SDGdetector"
"https://github.com/husseinaluie/FlowSieve"
"https://github.com/flekschas/regl-scatterplot"
"https://github.com/tylertrimble/viswaternet"
"https://github.com/FitSNAP/FitSNAP"
"https://github.com/mscaudill/openseize"
"https://github.com/obertscheiderfhwn/RTMsim"
"https://github.com/ropensci/predictNMB"
"https://github.com/henry2004y/Vlasiator.jl"
"https://github.com/gianthk/ciclope"
"https://github.com/SwiftVISA/SwiftVISASwift.git"
"https://github.com/polca/unfold"
"https://github.com/Aarhus-Psychiatry-Research/timeseriesflattener"
"https://github.com/grburgess/ronswanson"
"https://github.com/neuroneural/brainchop"
"https://github.com/ABM4ALL/Melodie"
"https://gitlab.ifremer.fr/resourcecode/resourcecode"
"https://github.com/SharmaLlama/ticktack"
"https://github.com/Robaina/Pynteny"
"https://gitlab.com/jesseds/apav"
"https://github.com/TNEL-UCSD/autolfads-deploy"
"https://github.com/CouncilDataProject/speakerbox"
"https://github.com/UM-Bridge/umbridge"
"https://github.com/karlotness/adrt"
"https://github.com/stillwater-sc/universal"
"https://github.com/OnroerendErfgoed/atramhasis"
"https://github.com/Artelia/NIMPHS"
"https://github.com/openmsi/openmsistream"
"https://github.com/kazewong/flowMC"
"https://github.com/pyccel/pyccel/"
"https://github.com/biocircuits/bioscrape/"
"https://github.com/ZacharyJia/opsdn"
"https://github.com/LuisScoccola/persistable"
"https://github.com/dazhwu/pydynpd"
"https://github.com/kingyin3613/RingsPy"
"https://github.com/pyomeca/biosiglive"
"https://gitlab.awi.de/sicopolis/sicopolis"
"https://github.com/barneydobson/wsi"
"https://github.com/Deltares/hydromt"
"https://github.com/baxmittens/DistributedSparseGrids.jl"
"https://github.com/JuliaGraphs/MultilayerGraphs.jl"
"https://github.com/jlacko/RCzechia"
"https://github.com/skiptoniam/ppmData"
"https://github.com/thermohub/thermofun"
"https://github.com/pnnl/copper"
"https://github.com/TomHilder/wakeflow"
"https://github.com/rivasiker/PhaseTypeR"
"https://github.com/blind-contours/CVtreeMLE"
"https://github.com/difuture-lmu/dsBinVal"
"https://github.com/markheckmann/OpenRepGrid.ic"
"https://github.com/galizia-lab/pyview"
"https://github.com/ParkvilleData/MetaGenePipe/"
"https://github.com/USU-Analytics-Solution-Center/Bruno.jl"
"https://github.com/DLR-RM/BlenderProc"
"https://github.com/benjaminbolling/RSW"
"https://github.com/blebon/directChillFoam"
"https://github.com/jdiasn/lidarSuit"
"https://github.com/JakobBD/pounce"
"https://github.com/s-abbas/robnptests"
"https://github.com/mrempel/geohexviz"
"https://github.com/xpsi-group/xpsi"
"https://github.com/mad-lab-fau/tpcp/"
"https://github.com/fatmasevinck/enetLTS"
"https://github.com/ThomasMBury/ewstools"
"https://github.com/olivecha/guitarsounds"
"https://github.com/CLOVER-energy/CLOVER"
"https://github.com/ttarkowski/quile"
"https://github.com/parmoo/parmoo"
"https://github.com/bjmorgan/py-sc-fermi"
"https://github.com/inrae/RCaNmodel/"
"https://github.com/hydrosolutions/riversCentralAsia/"
"https://github.com/mlpack/mlpack"
"https://github.com/tud-hri/joan"
"https://gitlab.com/dglaeser/fieldcompare"
"https://github.com/nickelnine37/pykronecker"
"https://github.com/kungfugo/BellDiagonalQudits.jl"
"https://github.com/Rocsg/FijiRelax"
"https://github.com/rhdtownsend/msg"
"https://github.com/Jammy2211/PyAutoGalaxy"
"https://github.com/martinlackner/abcvoting"
"https://github.com/annajenul/UBayFS"
"https://github.com/SuperKogito/spafe"
"https://github.com/schochastics/signnet"
"https://github.com/BiomedSciAI/fuse-med-ml"
"https://github.com/ropensci/spiro/"
"https://github.com/mgm8/pyngham"
"https://github.com/sjbeckett/localcovid19now"
"https://github.com/lorenzo-rovigatti/oxDNA"
"https://gitlab.com/fibreglass/pivc"
"https://github.com/N-Wouda/ALNS"
"https://github.com/ICESat2-SlideRule/paper"
"https://github.com/ianfhunter/GNOLL"
"https://github.com/Jacks0nJ/PyFPT"
"https://gitlab.com/ProjectRHEA/flowsolverrhea"
"https://github.com/MartianColonist/POSEIDON"
"https://github.com/tkonolige/city2ba"
"https://github.com/Pizzuti92/MG-MAMPOSSt"
"https://gitlab.com/programgreg/tagginglatencyestimator"
"https://github.com/ComputationalPhysiology/simcardems"
"https://github.com/szhorvat/IGraphM"
"https://github.com/vortex-exoplanet/VIP"
"https://github.com/fbreitwieser/krakenuniq"
"https://gite.lirmm.fr/doccy/RedOak"
"https://github.com/statdivlab/rigr"
"https://github.com/MeasureTransport/MParT"
"https://github.com/ropensci/daiquiri"
"https://github.com/lanl/GLUE"
"https://github.com/sebastian-zieba/PACMAN"
"https://github.com/flu-crew/smot"
"https://github.com/gnudatalanguage/gdl"
"https://github.com/jjmccollum/teiphy"
"https://github.com/JuliaSmoothOptimizers/PDENLPModels.jl"
"https://github.com/mmore500/hstrat"
"https://github.com/CliMA/EnsembleKalmanProcesses.jl"
"https://github.com/freqtrade/freqtrade"
"https://github.com/siavashk/pycpd"
"https://github.com/quantling/pyndl"
"https://github.com/dianna-ai/dianna"
"https://github.com/danielenricocahall/elephas"
"https://github.com/SYalouz/QuantNBody"
"https://gitlab.com/InspectorCell/inspectorcell"
"https://github.com/terminological/dtrackr"
"https://github.com/Eden-Kramer-Lab/spectral_connectivity"
"https://github.com/vyrjana/DearEIS"
"https://github.com/lmiconsulting/cosasi/"
"https://github.com/urban-fasel/FlexWingROM"
"https://github.com/ppsp-team/PyNM"
"https://github.com/kathlandgren/SWAMPE"
"https://github.com/RemoteSensingTools/vSmartMOM.jl"
"https://github.com/txopen/histoc"
"https://github.com/pydemull/activAnalyzer"
"https://github.com/SMTG-UCL/ShakeNBreak"
"https://gitlab.com/wpettersson/kep_solver"
"https://github.com/milnus/Corekaburra"
"https://github.com/NorwegianVeterinaryInstitute/ALPPACA"
"https://github.com/ICAMS/strucscan"
"https://gitlab.mpikg.mpg.de/curcuraci/bmiptools"
"https://github.com/AP6YC/ClusterValidityIndices.jl"
"https://github.com/tensorly/viz"
"https://github.com/adriancorrendo/metrica/"
"https://github.com/dunnkers/fseval"
"https://github.com/masadcv/FastGeodis"
"https://git.mpib-berlin.mpg.de/castellum/castellum"
"https://github.com/UrbanRuralSystems/ur-scape"
"https://github.com/SotaYoshida/NuclearToolkit.jl"
"https://github.com/ConnorDonegan/geostan"
"https://github.com/Natsiopoulos/ARDL"
"https://github.com/kavir1698/EvoDynamics.jl"
"https://github.com/jonathanHuwP/CrystalGrowthTracker"
"https://bitbucket.org/bmskinner/nuclear_morphology"
"https://gitlab.com/petsc/petsc"
"https://github.com/ggonnella/fastsubtrees"
"https://github.com/cgrudz/DataAssimilationBenchmarks.jl"
"https://github.com/xinyiguan/py2lispIDyOM"
"https://github.com/brainets/frites"
"https://github.com/IMMM-SFA/tell"
"https://github.com/zizroc/villager"
"https://github.com/watts-dev/watts"
"https://github.com/Ajstros/pyripherals"
"https://github.com/minaskar/pocomc"
"https://github.com/cwentland0/perform"
"https://github.com/ashleychontos/pySYD"
"https://github.com/giotto-ai/giotto-deep"
"https://github.com/DominiqueMaucieri/quadcleanR"
"https://github.com/mzabrams/fars-cleaner"
"https://github.com/chmarti1/PYroMat"
"https://github.com/bcgsc/btllib"
"https://github.com/LTLA/basilisk"
"https://gitlab.com/ags-data-format-wg/ags-python-library"
"https://github.com/kevin218/Eureka"
"https://github.com/bancaditalia/black-it/"
"https://github.com/Beuth-Erdelt/DBMS-Benchmarker"
"https://github.com/RECETOX/MSMetaEnhancer"
"https://github.com/klb2/qmkpy"
"https://github.com/Qiskit/rustworkx"
"https://github.com/lanl/scico"
"https://github.com/riatelab/osrm/"
"https://github.com/jmejia8/Metaheuristics.jl"
"https://github.com/prioritizr/wdpar"
"https://github.com/jfowkes/pycutest"
"https://github.com/SDXorg/pysd"
"https://github.com/moead-framework/framework"
"https://github.com/pymedphys/pymedphys"
"https://github.com/nathanael-fijalkow/DeepSynth"
"https://github.com/Basvanstein/GSAreport"
"https://github.com/hues-platform/cesar-p-core"
"https://github.com/stinefm/relsad"
"https://git.geomar.de/digital-earth/dasf/dasf-messaging-python"
"https://github.com/vferat/pycrostates"
"https://github.com/chocoteam/choco-solver"
"https://github.com/JulianKarlBauer/mechkit"
"https://github.com/JorenSix/Panako"
"https://github.com/bluefoxr/COINr"
"https://github.com/VChristiaens/special"
"https://github.com/cbrnr/mnelab"
"https://github.com/SimVascular/svFSI"
"https://github.com/hrossman/pymsm"
"https://github.com/hpgem/nanomesh"
"https://github.com/easystats/datawizard"
"https://github.com/DiamondLightSource/volume-segmantics"
"https://github.com/relf/egobox"
"https://github.com/ZeitgeberH/patchview"
"https://github.com/enthought/vpsearch"
"https://github.com/cire-thk/BifacialSimu"
"https://gitlab.com/permafrostnet/teaspoon"
"https://github.com/cwinpy/cwinpy"
"https://github.com/firefly-cpp/NiaARM"
"https://github.com/DESI-UR/VAST"
"https://github.com/CederGroupHub/smol"
"https://github.com/RBrearton/islatu"
"https://github.com/bcjaeger/aorsf"
"https://github.com/CMakePP/CMinx"
"https://github.com/schochastics/netrankr"
"https://github.com/nhejazi/haldensify"
"https://github.com/TRIQS/solid_dmft"
"https://github.com/Xia-Yijie/Xponge"
"https://github.com/cosimameyer/overviewR"
"https://github.com/JGCRI/rmap"
"https://github.com/atmos-cloud-sim-uj/PyMPDATA"
"https://github.com/perfanalytics/pose2sim"
"https://gitlab.kuleuven.be/ITSCreaLab/public-toolboxes/dyntapy"
"https://github.com/SolavLab/DuoDIC"
"https://github.com/JuliaDynamics/TimeseriesSurrogates.jl"
"https://github.com/n8thangreen/BCEA/"
"https://github.com/wasserman-group/pyCADMium"
"https://github.com/SietzeN/glottospace"
"https://github.com/NREL/graph-env/"
"https://github.com/LucyMcGowan/tipr"
"https://github.com/alexriss/SpmImageTycoon.jl"
"https://github.com/vsoch/citelang"
"https://github.com/jmcbroome/BTE"
"https://github.com/MonashSmartStructures/ospgrillage"
"https://jugit.fz-juelich.de/compflu/swalbe.jl/"
"https://github.com/gasparl/possa/"
"https://github.com/E3SM-Project/gdess"
"https://github.com/cicirello/rho-mu"
"https://github.com/travisseymour/EPICpy"
"https://github.com/siavash-saki/tesspy"
"https://github.com/floodlight-sports/floodlight"
"https://github.com/mne-tools/mne-icalabel"
"https://github.com/matthiasdemuzere/w2w"
"https://github.com/valentineap/pyprop8"
"https://github.com/palaimon/ipyannotator/"
"https://github.com/ejikeugba/gofcat"
"https://github.com/Mat-dp/mat-dp-core"
"https://github.com/PCRuniversum/PCRedux"
"https://github.com/raddleverse/MimiBRICK.jl"
"https://github.com/JetBrains-Research/spbla"
"https://github.com/JuliaHEP/UnROOT.jl"
"https://github.com/SciML/GlobalSensitivity.jl"
"https://github.com/wouterpeere/GHEtool"
"https://github.com/JanLeppert/GasChromatographySimulator.jl"
"https://github.com/temuller/hostphot"
"https://github.com/ptiede/Comrade.jl"
"https://github.com/ajohnson-uoregon/llvm-project/"
"https://github.com/flyaflya/causact/"
"https://gitlab.inria.fr/bcoye/game-engine-scheduling-simulation"
"https://github.com/maize-genetics/rTASSEL"
"https://github.com/domschrei/mallob"
"https://github.com/mh-skjelvareid/synaptus"
"https://github.com/Cadaei-Yuvxvs/OSHy-X"
"https://github.com/max-little/GRAPL"
"https://github.com/yogi-tud/space_gpu"
"https://github.com/sparks-baird/xtal2png"
"https://github.com/drcandacemakedamoore/cleanX"
"https://github.com/sebastien-plutniak/archeofrag"
"https://github.com/ronshnapp/MyPTV"
"https://github.com/thomaspinder/GPJax"
"https://github.com/RECETOX/RIAssigner"
"https://github.com/fjprichard/PyAFBF/"
"https://gitlab.com/dsbowen/conditional-inference"
"https://github.com/jacksund/simmate"
"https://github.com/undark-lab/swyft"
"https://github.com/xuanxu/starmatrix"
"https://github.com/EnsembleGovServices/kamodo-core"
"https://github.com/milnus/Magphi"
"https://github.com/amoradinejad/limHaloPT"
"https://github.com/TrackerControl/tracker-control-android"
"https://github.com/nasa/simupy-flight"
"https://github.com/NASA-PDS/naif-pds4-bundler"
"https://github.com/kno10/python-kmedoids.git"
"https://github.com/petermr/pygetpapers/"
"https://github.com/tidymodels/stacks"
"https://github.com/rbturnbull/ausdex"
"https://github.com/lanl/spiner"
"https://github.com/a-ws-m/unlockNN/"
"https://github.com/eferrea/BCI-Master"
"https://github.com/sadit/SimilaritySearch.jl"
"https://github.com/mdhaber/scipy/"
"https://github.com/dbrizard/elwaspatid"
"https://github.com/rheia-framework/RHEIA"
"https://gitlab.com/dmt-development/dmt-core"
"https://github.com/tiagoseq/NeuralFieldEq.jl"
"https://github.com/Muhao-Chen/Tensegrity_Finite_Element_Method_TsgFEM"
"https://github.com/alesantuz/musclesyneRgies"
"https://github.com/ropensci/tidyqpcr"
"https://github.com/connectomicslab/connectomemapper3"
"https://github.com/samuelburbulla/dune-mmesh/"
"https://github.com/yuliadm/mixComp"
"https://gitlab.com/thartwig/asloth"
"https://github.com/vipinagrawal25/MeMC"
"https://github.com/icb-dcm/pyabc"
"https://github.com/simplefoc/Arduino-FOC/"
"https://gitlab.com/moerman1/fhi-cc4s"
"https://github.com/engyasin/Offline_MOT"
"https://github.com/C0PEP0D/otto"
"https://github.com/insightsengineering/rbmi"
"https://github.com/pnnl/interflow"
"https://github.com/mbarzegary/BioDeg-UI/"
"https://github.com/pysal/spopt"
"https://github.com/mmollina/viewpoly"
"https://github.com/gridap/GridapDistributed.jl/"
"https://github.com/szwiep/py_SBeLT"
"https://gitlab.ruhr-uni-bochum.de/reichp2y/proppy"
"https://github.com/chrisaberson/BetterReg"
"https://github.com/maxibor/sam2lca"
"https://github.com/dfki-ric-underactuated-lab/torque_limited_simple_pendulum"
"https://github.com/ScialdoneLab/MitoHEAR"
"https://github.com/VeinsOfTheEarth/rabpro"
"https://github.com/NKI-AI/direct"
"https://github.com/siminegroup/E2EDNA2"
"https://github.com/warrickball/tomso"
"https://github.com/mad-lab-fau/imucal"
"https://github.com/baxmittens/VTUFileHandler"
"https://github.com/lucass-carneiro/QuasinormalModes.jl/"
"https://github.com/mattpitkin/lintegrate"
"https://github.com/erling6232/imagedata"
"https://github.com/byuflowlab/GXBeam.jl"
"https://github.com/FEniCS/basix"
"https://framagit.org/GustaveCoste/off-product-environmental-impact/"
"https://github.com/cartemic/pypbomb/"
"https://github.com/ngltr/sinaps"
"https://github.com/OttoStruve/muler"
"https://github.com/alstat/ALUES"
"https://github.com/ropensci/unifir"
"https://gitlab.pasteur.fr/vlegrand/ROCK"
"https://github.com/uw-comphys/opencmp"
"https://github.com/R-Vessel-X/SlicerRVXLiverSegmentation"
"https://github.com/infer-actively/pymdp"
"https://github.com/JuliaOcean/PlanktonIndividuals.jl"
"https://github.com/project-gemmi/gemmi/"
"https://github.com/thejackal360/OpenPelt-Public"
"https://github.com/AP6YC/AdaptiveResonance.jl"
"https://github.com/cgre-aachen/gemgis"
"https://github.com/lilyminium/psiresp"
"https://github.com/bauer-alex/APCtools"
"https://github.com/INCEPTdk/adaptr"
"https://github.com/tumcms/Open-Infra-Platform"
"https://github.com/Heldenkombinat/Logodetect"
"https://github.com/atmos-cloud-sim-uj/PySDM.git"
"https://github.com/althonos/pyrodigal/"
"https://github.com/elizabethnewman/hessQuik"
"https://gitlab.uliege.be/smart_grids/public/gboml"
"https://github.com/RWTH-EBC/AixCaliBuHA"
"https://github.com/mithun218/GiNaCDE"
"https://github.com/dgbowl/yadg"
"http://github.com/weecology/portalcasting"
"https://github.com/Anaphory/lexedata/"
"https://gitlab.com/culturalcartography/text2map"
"https://github.com/SINTEF/AutoActive-ActivityPresenter.git"
"https://github.com/pygsflow/pygsflow.git"
"https://bitbucket.org/berkeleylab/hardware-control/src/main/"
"https://github.com/pyamg/pyamg/"
"https://github.com/jeremiecoullon/SGMCMCJax"
"https://github.com/simoninireland/epyc"
"https://github.com/SWIFTSIM/emulator"
"https://github.com/mishioo/tesliper"
"https://github.com/aalhossary/pyemgpipeline"
"https://github.com/ECP-copa/Cabana"
"https://github.com/chainsawriot/sweater"
"https://github.com/phenology/cgc"
"https://github.com/fredstro/hilbertmodgroup"
"https://github.com/U-Alberta/ADaPT-ML"
"https://github.com/BackmanLab/PWSpy"
"https://github.com/SandoghdarLab/PiSCAT"
"https://github.com/BjoernBiltzinger/pyspi"
"https://github.com/PaulSt/NGSTrefftz"
"https://github.com/glasgowcompbio/vimms/"
"https://github.com/ColemanRHarris/mxnorm"
"https://github.com/ggciag/mandyoc"
"https://github.com/FZJ-IEK3-VSA/LoadProfileGenerator"
"https://github.com/octopus-sensing/octopus-sensing"
"https://github.com/QEC-pages/QDistRnd/"
"https://github.com/florisvb/PyNumDiff"
"https://github.com/arcaldwell49/SimplyAgree"
"https://github.com/chchch/sanskrit-alignment/"
"https://github.com/AlphonsG/Rainbow-Optical-Flow-For-ALI"
"https://github.com/FSEC-Photovoltaics/pvrpm-lcoe"
"https://github.com/finagle29/DBSP_DRP/"
"https://code.usgs.gov/umesc/quant-ecology/fishstan/"
"https://github.com/csdms/babelizer/"
"https://github.com/aliaksei135/seedpod_ground_risk/"
"https://github.com/leprojetcastor/castor"
"https://github.com/TriPed-Robot/TriP"
"https://github.com/coleygroup/pyscreener.git"
"https://gitlab.com/sissopp_developers/sissopp"
"https://github.com/alexmalins/radioactivedecay/"
"https://github.com/ArkajyotiSaha/RandomForestsGLS"
"https://github.com/mcsiple/mmrefpoints"
"https://github.com/EISy-as-Py/hardy"
"https://github.com/rickhelmus/patRoon"
"https://github.com/USEPA/nsink"
"https://github.com/indralab/pybiopax"
"https://github.com/jiahecui/SenAOReFoc"
"https://github.com/PolymerGuy/recolo"
"https://github.com/neuralhydrology/neuralhydrology"
"https://github.com/PopMedNet-Team/popmednet.git"
"https://github.com/ni1o1/transbigdata"
"https://github.com/Magritte-code/Magritte.git"
"https://github.com/symmy596/SurfinPy"
"https://github.com/inpefess/gym-saturation"
"https://github.com/dankelley/oce"
"https://github.com/villano-lab/nrCascadeSim"
"https://github.com/szymon-datalions/pyinterpolate"
"https://github.com/pybamm-team/liionpack"
"https://github.com/alexander-pastukhov/bistablehistory"
"https://github.com/volkamerlab/opencadd"
"https://gitlab.com/picos-api/picos"
"https://github.com/devsim/devsim.git"
"https://github.com/JuliaQX/QXTools.jl"
"https://github.com/elwinter/nnde"
"https://github.com/mne-tools/mne-python"
"https://github.com/metawards/MetaWards"
"https://gitlab.kitware.com/LBM/lattice-boltzmann-solver"
"https://github.com/kostergroup/SIMsalabim"
"https://github.com/JuliaSmoothOptimizers/DCISolver.jl"
"https://github.com/ocean-eddy-cpt/gcm-filters"
"https://github.com/SamDuffield/bmm"
"https://github.com/PyTorchLightning/metrics"
"https://github.com/JuliaManifolds/Manopt.jl"
"https://github.com/UNSW-CEEM/nempy"
"https://github.com/ImperialCollegeLondon/champ"
"https://github.com/rhenkin/visxhclust"
"https://github.com/bramvandijk88/cacatoo"
"https://github.com/JunTaoLuo/mctreesearch4j"
"https://github.com/vishwas1984/LaplaceInterpolation.jl"
"https://github.com/TeamLEGWORK/LEGWORK"
"https://github.com/dynamicslab/pysindy"
"https://github.com/delve-team/delve"
"https://github.com/mbhall88/rasusa"
"https://github.com/JGCRI/rfasst"
"https://github.com/alan-turing-institute/Palaeoanalytics"
"https://github.com/genome/bam-readcount"
"https://github.com/SCECcode/pycsep"
"https://github.com/multiply-org/sar-pre-processing.git"
"https://github.com/UCD4IDS/WaveletsExt.jl"
"https://github.com/TeamCOMPAS/COMPAS"
"https://gitlab.com/pyFBS/pyFBS"
"https://gitlab.com/cracklet/cracklet.git"
"https://github.com/siara-cc/Unishox2"
"https://github.com/nimble-dev/compareMCMCs/"
"https://github.com/neuralgraphs/diman"
"https://github.com/ropensci/terrainr"
"https://github.com/GaryBAYLOR/mixR.git"
"https://github.com/Yu-Group/veridical-flow"
"https://github.com/stammler/simframe"
"https://github.com/thejasvibr/bat_beamshapes.git"
"https://github.com/esteinig/nanoq"
"https://github.com/shirtsgroup/physical_validation"
"https://github.com/JLBLine/WODEN"
"https://github.com/JuliaOcean/AIBECS.jl"
"https://github.com/ElectionDataAnalysis/electiondata"
"https://github.com/nhejazi/medoutcon"
"https://github.com/embodied-computation-group/systole/"
"https://github.com/BritishGeologicalSurvey/pyvolcans"
"https://github.com/jorittmo/singcar"
"https://github.com/mikegrudic/pytreegrav"
"https://bitbucket.org/orionmhdteam/orion2_release1/src/master/"
"https://github.com/hcdenbakker/sepia"
"https://github.com/hsci-r/finnish-media-scrapers"
"https://github.com/ORNL/tx2"
"https://github.com/Hegghammer/daiR"
"https://github.com/klevis-a/kinematics-vis.git"
"https://github.com/jameschapman19/cca_zoo"
"https://github.com/bootphon/phonemizer"
"https://github.com/QibangLiu/PDLSM-FEM_mpi"
"https://github.com/ArgoCanada/argodata"
"https://github.com/TNanukem/scikit-net/"
"https://github.com/wtraylor/modular_megafauna_model"
"https://github.com/onnela-lab/beiwe-backend"
"https://github.com/FlowModelingControl/flowtorch"
"https://github.com/sandrinecharles/morse_paper"
"https://gitlab.com/remram44/taguette"
"https://github.com/GRChombo/GRChombo"
"https://github.com/fabian-sp/GGLasso"
"https://github.com/raspishake/rsudp"
"https://github.com/Music-and-Culture-Technology-Lab/omnizart"
"https://bitbucket.org/mituq/muq2.git"
"https://github.com/alicia-ziying-yang/conTEXT-explorer"
"https://github.com/survey-methods/samplics/"
"https://github.com/r-spatialecology/shar"
"https://github.com/ahoshiyar/ordPens"
"https://github.com/carnotresearch/cr-sparse"
"https://github.com/CouncilDataProject/cookiecutter-cdp-deployment"
"https://github.com/chasmani/piecewise-regression"
"https://github.com/koenderks/jaspAudit"
"https://github.com/KIT-MBS/pyREX"
"https://github.com/idaholab/moose"
"https://github.com/temken/obscura"
"https://github.com/ropensci/jagstargets"
"https://github.com/nextstrain/nextclade"
"https://github.com/michaeltouati/ESVM"
"https://github.com/llrs/experDesign"
"https://github.com/SNEWS2/snewpy"
"https://github.com/pikarpov-LANL/Sapsan"
"https://github.com/savage13/sacio"
"https://github.com/joergbuchwald/joss_ogs6py_VTUinterface"
"https://github.com/spectrapepper/spectrapepper"
"https://github.com/SirSharpest/NarrowEscapeSimulator"
"https://github.com/EcoJulia/Microbiome.jl"
"https://github.com/johannes-titz/cofad"
"https://github.com/MichaelSel/edoJS"
"https://github.com/PathwayCommons/grounding-search"
"https://github.com/richteague/disksurf"
"https://github.com/donaldRwilliams/GGMnonreg"
"https://github.com/hetalang/heta-compiler"
"https://github.com/lantunes/cellpylib"
"https://github.com/ropensci/cffr"
"https://github.com/vinisalazar/BioProv/"
"https://github.com/jorisparet/partycls"
"https://github.com/athulpg007/AMAT"
"https://github.com/ropensci/excluder/"
"https://github.com/CLARIAH/grlc"
"https://github.com/aalfons/robustHD/"
"https://github.com/martin3141/spant"
"https://github.com/johncwok/CategoricalTimeSeries.jl"
"https://github.com/galsci/pysm"
"https://github.com/SWE-UniStuttgart/Qlunc"
"https://github.com/cheginit/HyRiver"
"https://github.com/wilkelab/Opfi"
"https://github.com/ejikeugba/serp"
"https://github.com/MikeSmithLabTeam/particletracker"
"https://github.com/thomgrand/fim-python"
"https://github.com/felixchenier/kineticstoolkit"
"https://github.com/IMMM-SFA/gamut"
"https://github.com/Shyentist/fish-r-man"
"https://github.com/opimwue/ddop"
"https://github.com/ArneTillmann/AuDoLab"
"https://github.com/torchgan/torchgan/"
"https://github.com/weblyzard/inscriptis/"
"https://github.com/fgjorup/Reel/"
"https://github.com/Open-ET/flux-data-qaqc"
"https://github.com/soraxas/sbp-env"
"https://github.com/VBlesius/RHRT"
"https://github.com/DrafProject/elmada"
"https://gitlab.com/jason-rumengan/pyarma"
"https://github.com/hpi-dhc/devicely/"
"https://github.com/amkram/shusher"
"https://github.com/AFD-Illinois/iharm3d/"
"https://github.com/npucino/sandpyper"
"https://github.com/mad-lab-fau/BioPsyKit"
"https://github.com/vaneseltine/nominally"
"https://github.com/ME-ICA/tedana"
"https://github.com/USEPA/LCIAformatter"
"https://github.com/freelawproject/eyecite"
"https://github.com/oneilsh/tidytensor"
"https://github.com/tresoldi/ngesh"
"https://gitlab.com/manchester_qbi/manchester_qbi_public/madym_cxx/"
"https://github.com/mrc-ide/individual"
"https://github.com/spinicist/riesling"
"https://github.com/andr1976/HydDown"
"https://github.com/intelligent-soft-robots/o80"
"https://github.com/aspuru-guzik-group/funsies"
"https://github.com/dfujim/bfit"
"https://github.com/RiccardoBiondi/segmentation"
"https://github.com/orbisgis/geoclimate/"
"https://github.com/jbytecode/JMcDM"
"https://github.com/nonlocalmodels/NLMech"
"https://github.com/champsproject/ldds"
"https://github.com/fAndreuzzi/BisPy"
"https://github.com/antoinediez/Sisyphe"
"https://github.com/virtual-vehicle/pointcloudset/"
"https://github.com/rob-luke/AuditoryStimuli.jl"
"https://github.com/qpv-research-group/rayflare"
"https://github.com/IMMM-SFA/cerf"
"https://github.com/dmey/synthia"
"https://github.com/Materials-Consortia/optimade-python-tools"
"https://github.com/feature-engine/feature_engine"
"https://github.com/tud-hri/travia"
"https://github.com/mingzehuang/latentcor"
"https://github.com/JGCRI/plutus.git"
"https://github.com/ecological-cities/home2park"
"https://github.com/patrickfuchs/buildH"
"https://github.com/Isurwars/Correlation/"
"https://github.com/tbep-tech/tbeptools"
"https://github.com/tidymodels/infer"
"https://github.com/MillionConcepts/lhorizon"
"https://github.com/Saran-nns/sorn/"
"https://github.com/poldracklab/nitransforms"
"https://github.com/skypyproject/skypy"
"https://github.com/hiddenSymmetries/simsopt"
"https://github.com/wesleyburr/subMaldi"
"https://github.com/jessecambon/tidygeocoder"
"https://github.com/COVID-IWG/epimargin"
"https://github.com/BenMql/coral"
"https://github.com/grant-m-s/astronomicAL"
"https://github.com/mpi4jax/mpi4jax"
"https://github.com/bshoshany/OGRe"
"https://github.com/JuliaPlots/Makie.jl"
"https://github.com/nkallima/sim-universal-construction"
"https://github.com/MAnalytics/opitools"
"https://github.com/esa/torchquad/"
"https://github.com/IMMM-SFA/diyepw/"
"https://github.com/nluetts/NoisySignalIntegration.jl"
"https://github.com/lcpp-org/RustBCA"
"https://github.com/PeerHerholz/BIDSonym/"
"https://github.com/meinardmueller/synctoolbox"
"https://github.com/semiautomaticgit/SemiAutomaticClassificationPlugin"
"https://github.com/DeltaRCM/pyDeltaRCM"
"https://github.com/twesterhout/lattice-symmetries"
"https://github.com/ranocha/SummationByPartsOperators.jl"
"https://github.com/mggg/ecological-inference"
"https://github.com/jacobmerson/model-traits"
"https://github.com/jamesrhester/Lerche.jl"
"https://github.com/mscroggs/symfem"
"https://github.com/LLNL/Abmarl/"
"https://github.com/satzbeleg/bwsample"
"https://github.com/LiangliangNan/Easy3D"
"https://github.com/barricklab/ostir"
"https://gitlab.com/marinvaders/marinvaders"
"https://github.com/roshansamuel/saras"
"https://github.com/kasasxav/ImSwitch"
"https://github.com/phyloref/jphyloref"
"https://github.com/CentreForHydrology/WDPM"
"https://github.com/gvegayon/rgexf/"
"https://github.com/derrynknife/SurPyval"
"https://github.com/ngsxfem/ngsxfem"
"https://github.com/ph-rast/bmgarch"
"https://github.com/labsquare/CutePeaks"
"https://github.com/Munroe-Meyer-Institute-VR-Laboratory/Biosensor-Framework"
"https://github.com/mlr-org/mcboost"
"https://github.com/easystats/see/"
"https://gitlab.com/dlr-ve/autumn/"
"https://github.com/fury-gl/fury"
"https://github.com/sagepublishing/rejected_article_tracker_pkg"
"https://github.com/SunilAnandatheertha/PXO"
"https://github.com/NMBU-Data-Science/RENT"
"https://github.com/giswqs/leafmap"
"https://github.com/PhilBoileau/cvCovEst"
"https://github.com/uDALES/u-dales"
"https://github.com/adithirgis/pollucheck"
"https://github.com/singularityhub/singularity-hpc"
"https://github.com/hknd23/idcempy"
"https://github.com/meinardmueller/libfmp"
"https://github.com/WatsonGroupTCD/J2suscep"
"https://github.com/r-cas/caracas"
"https://github.com/kutaslab/fitgrid"
"https://github.com/pratheesh3780/grapesAgri1"
"https://github.com/traja-team/traja"
"https://github.com/lumen-org/lumen"
"https://github.com/grburgess/popsynth"
"https://github.com/glotzerlab/coxeter"
"https://github.com/epiforecasts/covidregionaldata"
"https://github.com/tramarobin/fctSPM"
"https://github.com/DrDaveShaw/INCHEM-Py"
"https://github.com/rodluger/starry_process"
"https://github.com/virgesmith/neworder"
"https://github.com/david-barnett/microViz"
"https://github.com/AMReX-Astro/Nyx"
"https://github.com/CEED/libCEED"
"https://github.com/datalad/datalad"
"https://github.com/ekaterinailin/AltaiPony"
"https://github.com/reizio/reiz.io"
"https://github.com/geospace-code/h5fortran"
"https://github.com/DrMarc/slab"
"https://github.com/IMMM-SFA/mosartwmpy"
"https://github.com/PyPSA/atlite"
"https://github.com/RTIInternational/gobbli"
"https://github.com/DedalusProject/eigentools"
"https://github.com/egonw/bacting"
"https://github.com/JoelForamitti/agentpy"
"https://github.com/Planet-AI-GmbH/tfaip"
"https://github.com/exoplanet-dev/exoplanet"
"https://bitbucket.org/sciencecapsule/sciencecapsule"
"https://gitlab.ethz.ch/holukas/dyco-dynamic-lag-compensation"
"https://github.com/dansarie/sboxgates"
"https://github.com/vavrines/Kinetic.jl"
"https://github.com/openscm/openscm-twolayermodel"
"https://github.com/bootphon/pygamma-agreement/"
"https://github.com/barbagroup/geoclaw-landspill"
"https://github.com/shihyuntang/igrins_rv"
"https://github.com/mjacob1002/Eir"
"https://github.com/hansenjohnson/WhaleMap"
"https://github.com/davemlz/eemont"
"https://github.com/sibirrer/lenstronomy"
"https://github.com/fitbenchmarking/fitbenchmarking"
"https://github.com/damcb/tyssue"
"https://github.com/cjbarrie/academictwitteR"
"https://github.com/LangeJens/CliquePercolation"
"https://github.com/tobiasschoch/wbacon"
"https://github.com/AlexanderFabisch/gmr"
"https://github.com/0xCoto/Virgo"
"https://github.com/ropensci/dataaimsr"
"https://github.com/pysal/spaghetti"
"https://github.com/netsiphd/netrd"
"https://github.com/andreasmang/claire"
"https://github.com/exafmm/exafmm-t"
"https://github.com/yaml2sbml-dev/yaml2sbml"
"https://github.com/OwenWard/ppdiag"
"https://github.com/IndrajeetPatil/ggstatsplot"
"https://github.com/lukapecnik/NiaAML"
"https://github.com/VNNikolaidis/nnlib2Rcpp"
"https://github.com/SMTG-UCL/surfaxe"
"https://github.com/IndrajeetPatil/statsExpressions"
"https://github.com/twosixlabs/magicwand-datatool"
"https://gitlab.com/libreumg/dataquier.git"
"https://github.com/ymocquar/HOODESolver.jl"
"https://github.com/DidierMurilloF/FielDHub"
"https://github.com/KALMUS-Color-Toolkit/KALMUS"
"https://github.com/ConorMacBride/mcalf"
"https://github.com/zoometh/iconr"
"https://github.com/SchlossLab/mikropml"
"https://github.com/SteveMacenski/slam_toolbox"
"https://github.com/D-K-E/graphical-models/"
"https://github.com/cdslaborg/paramonte"
"https://github.com/icecube/FIRESONG"
"https://github.com/vprusso/toqito"
"https://gitlab.com/fduchate/predihood"
"https://github.com/BioMeCIS-Lab/OpenOmics"
"https://github.com/bcgov/bcdata"
"https://github.com/robertmartin8/PyPortfolioOpt/"
"https://github.com/julia-wrobel/registr"
"https://github.com/EcoJulia/EcologicalNetworks.jl"
"https://github.com/csinva/imodels"
"https://github.com/spacetx/starfish"
"https://github.com/3d-pli/fastpli"
"https://github.com/niceume/datasailr"
"https://github.com/JohannesBuchner/BXA"
"https://github.com/isoverse/isoreader"
"https://github.com/sylvaticus/BetaML.jl"
"https://github.com/JuliaClimate/IndividualDisplacements.jl"
"https://github.com/sdparsons/splithalf/"
"https://github.com/dpalmasan/TRUNAJOD2.0"
"https://github.com/easystats/performance"
"https://github.com/FourierFlows/GeophysicalFlows.jl"
"https://github.com/ropensci/stantargets"
"https://github.com/KTH-Nek5000/UQit"
"https://github.com/lskatz/SneakerNet"
"https://github.com/kuadrat/data_slicer"
"https://github.com/mengaldo/PySPOD"
"https://github.com/niosh-mining/obsplus"
"https://github.com/AstraZeneca/kallisto"
"https://github.com/JostMigenda/sntools/"
"https://github.com/robashaw/libecpint"
"https://github.com/linksmart/thing-directory"
"https://github.com/CTU-Bern/presize"
"https://github.com/Sbozzolo/kuibit/"
"https://github.com/focolab/minimo.git"
"https://github.com/gvilitechltd/LibSWIFFT"
"https://github.com/nevrome/bleiglas"
"https://github.com/sisl/POMDPStressTesting.jl"
"https://github.com/Narayana-Rao/SAR-tools"
"https://github.com/msalibian/RBF"
"https://github.com/vbaliga/gaussplotR"
"https://gitlab.com/energyincities/besos/"
"https://github.com/PyFstat/PyFstat/"
"https://github.com/somefunAgba/NLSIG-COVID19Lab"
"https://git.rwth-aachen.de/ants/sensorlab/imea"
"https://github.com/mwaskom/seaborn"
"https://github.com/JulienPeloton/s4cmb"
"https://github.com/benmaier/epipack"
"https://github.com/mponce0/covid19.analytics/"
"https://github.com/JohannesBuchner/UltraNest/"
"https://github.com/0x0f0f0f/Metatheory.jl"
"https://github.com/bommert/stabm"
"https://github.com/prdm0/ropenblas"
"https://github.com/OpenMDAO/dymos"
"https://gitlab.com/emd-dev/emd"
"https://github.com/JGCRI/ambrosia"
"https://github.com/Balaje/iceFem"
"https://gitlab.inria.fr/mosaic/bvpy"
"https://github.com/bempp/bempp-cl"
"https://earth.bsc.es/gitlab/wuruchi/autosubmitreact"
"https://github.com/fermisurfaces/IFermi"
"https://github.com/kadyb/rgugik"
"https://github.com/samaygarg/fuelcell"
"https://github.com/jbuisine/macop"
"https://github.com/js2264/VplotR/"
"https://github.com/wvanzeist/riroriro"
"https://github.com/jonschwenk/RivGraph"
"https://github.com/lydialucchesi/Vizumap"
"https://github.com/EpistasisLab/regens"
"https://github.com/symmy596/Polypy"
"https://github.com/imr-framework/OCTOPUS"
"https://github.com/giswqs/lidar"
"https://github.com/montilab/nf-gwas-pipeline"
"https://bitbucket.org/berkeleylab/esdr-pygdh/"
"https://www.github.com/pangeo-data/climpred"
"https://github.com/ghislainv/forestatrisk"
"https://github.com/zemogle/astrosource/"
"https://github.com/NREL/OpenOA"
"https://github.com/richford/groupyr"
"https://github.com/learningsimulator/learningsimulator"
"https://github.com/jdber1/opendrop"
"https://github.com/pencil-code/pencil-code"
"https://github.com/ClaudioZandonella/PRDA"
"https://github.com/pyomeca/ezc3d"
"https://github.com/JannisHoch/copro"
"https://github.com/dynamicslab/pysensors/"
"https://github.com/vahid-sb/MiTfAT"
"https://github.com/Jammy2211/PyAutoLens"
"https://github.com/PsrSigSim/PsrSigSim"
"https://github.com/ivadomed/ivadomed"
"https://github.com/sciapp/sampledb"
"https://github.com/tobias-dv-lnu/s4rdm3x"
"https://github.com/upb-lea/gym-electric-motor"
"https://github.com/rhayes777/PyAutoFit"
"https://github.com/scikit-hep/pyhf"
"https://github.com/deepskies/deeplenstronomy"
"https://github.com/AlexMikes/AutoFunc"
"https://gitlab.com/mmartin-lagarde/exonoodle-exoplanets/-/tree/master/"
"https://github.com/Circuitscape/Omniscape.jl"
"https://github.com/sebhaan/geobo"
"https://github.com/Oftatkofta/cellocity"
"https://github.com/EcoJulia/SimpleSDMLayers.jl"
"https://github.com/tudelft3d/3dfier"
"https://github.com/bcgov/shinyssdtools"
"https://gitlab.com/ffaucher/hawen"
"https://github.com/damienmarsic/Parent-map"
"https://github.com/lzkelley/kalepy"
"https://github.com/ryokbys/nap"
"https://github.com/pyomeca/biorbd"
"https://github.com/krober10nd/SeismicMesh"
"https://framagit.org/GustaveCoste/eldam"
"https://github.com/Leo-Simpson/c-lasso"
"https://github.com/ShubhadeepSadhukhan1993/fastSF"
"https://github.com/ropensci/targets"
"https://github.com/AlexanderLabWHOI/EUKulele"
"https://gitlab.com/gims-developers/gims"
"https://github.com/nextstrain/augur/"
"https://github.com/ropensci/rdataretriever"
"https://github.com/jbytecode/LinRegOutliers"
"https://github.com/EMResearch/EvoMaster"
"https://github.com/benjaminbolling/DynaGUI"
"https://github.com/Climdyn/qgs"
"https://github.com/easystats/effectsize"
"https://github.com/alan-turing-institute/DetectorChecker"
"https://github.com/ropensci/SymbiotaR2"
"https://github.com/ropensci/coder"
"https://github.com/JuliaHCI/ADI.jl"
"https://github.com/pypeit/PypeIt"
"https://github.com/fruzsinaagocs/oscode"
"https://github.com/Geodels/gospl/"
"https://github.com/BioGearsEngine/core"
"https://github.com/LBNL-ETA/MSWH"
"https://github.com/d-tear/SIAL"
"https://github.com/IMTtugraz/PyQMRI/tree/JOSS_pub"
"https://git.iws.uni-stuttgart.de/tools/frackit"
"https://github.com/JGCRI/hectorui/"
"https://github.com/nedRad88/SCALAR"
"https://github.com/chorscroft/zalpha/tree/master/paper"
"https://github.com/circuitgraph/circuitgraph"
"https://github.com/rcarragh/c212"
"https://github.com/lrnv/cort"
"https://github.com/MAnalytics/akmedoids"
"https://gitlab.inria.fr/bramas/tbfmm"
"https://gitlab.com/vibes-developers/vibes"
"https://github.com/BioSTEAMDevelopmentGroup/thermosteam"
"https://github.com/idaholab/moose"
"https://github.com/amanchokshi/EMBERS"
"https://github.com/asmusskar/ALVA"
"https://github.com/hemanthpruthvi/PyAstroPol"
"https://github.com/atomneb/AtomNeb-py"
"https://github.com/equib/pyEQUIB"
"https://github.com/alan-turing-institute/monitoring-ecosystem-resilience"
"https://github.com/SwissClinicalTrialOrganisation/secuTrialR"
"https://gitlab.com/geekysquirrel/bigx"
"https://github.com/pmkruyen/dearscholar.git"
"https://github.com/ketch/nodepy"
"https://bitbucket.org/clhaley/Multitaper.jl"
"https://github.com/KathrynJones1/catwoman"
"https://github.com/KarrLab/de_sim"
"https://gitlab.com/LMSAL_HUB/aia_hub/aiapy"
"https://github.com/bihealth/sodar_core"
"https://github.com/thepetabyteproject/your"
"https://gitlab.gwdg.de/mpievolbio-it/crbhits"
"https://github.com/xoopR/set6"
"https://github.com/chainsawriot/oolong"
"https://github.com/Yomguithereal/talisman"
"https://github.com/jbytecode/rcaller/"
"https://github.com/Kuifje02/vrpy"
"https://github.com/alan-turing-institute/MLJ.jl"
"https://github.com/ihesp/AR_tracker/tree/master/joss"
"https://github.com/syasini/AstroPaint"
"https://github.com/DeepRegNet/DeepReg"
"https://github.com/neuroanatomy/reorient"
"https://github.com/lnferris/ocean_data_tools"
"https://github.com/ketch/RK-Opt"
"https://github.com/VincentAlcazer/StatAid"
"https://github.com/JuliaDynamics/DrWatson.jl"
"https://github.com/spectralcode/OCTproZ"
"https://github.com/kgoldfeld/simstudy/"
"https://github.com/tylunel/pvpumpingsystem"
"https://github.com/JanCBrammer/biopeaks"
"https://github.com/WelbornGroup/ELECTRIC"
"https://github.com/ml-evs/matador"
"https://github.com/xillig/TTLocVis"
"https://github.com/sp94/Peacock.jl"
"https://github.com/ropensci/mcbette"
"https://github.com/3d-pli/SLIX"
"https://github.com/AngryMaciek/angry-moran-simulator"
"https://github.com/MRN-Code/coinstac"
"https://github.com/alexrockhill/pd-parser"
"https://github.com/passaH2O/dorado"
"https://github.com/mdolab/pyoptsparse/"
"https://github.com/amrex-astro/Castro"
"https://github.com/dstansby/pfsspy"
"https://github.com/21cmFAST/21cmFAST"
"https://github.com/Nico-Curti/rFBP"
"https://github.com/pmeier/pystiche"
"https://github.com/mtsch/Ripserer.jl"
"https://github.com/nicolet5/DiffCapAnalyzer"
"https://github.com/girder/viime"
"https://gitlab.com/project-dare/dare-platform"
"https://github.com/jboynyc/textnets"
"https://github.com/labsyspharm/minerva-story"
"https://github.com/mortonne/psifr"
"https://github.com/pymatting/pymatting"
"https://github.com/ramadatta/CPgeneProfiler"
"https://github.com/morphometry/papaya2"
"https://github.com/NCAS-CMS/cfdm"
"https://github.com/andyphilips/dynamac"
"https://github.com/VU-BEAM-Lab/GENRE"
"https://github.com/anwarbio/bioassays"
"http://github.com/jollejolles/pirecorder"
"https://github.com/tbrown122387/pf"
"https://github.com/ropensci/medrxivr"
"https://github.com/nhejazi/txshift"
"https://github.com/upb-lea/openmodelica-microgrid-gym"
"https://github.com/brainglobe/bg-atlasapi"
"https://github.com/s-goldman/Dusty-Evolved-Star-Kit"
"https://github.com/MrMinimal64/multivar_horner"
"https://github.com/wilsonrljr/sysidentpy"
"https://github.com/czbiohub/cerebra"
"https://github.com/htjb/maxsmooth"
"https://github.com/bethgelab/foolbox"
"https://github.com/bblodfon/emba"
"https://github.com/tlverse/hal9001"
"https://gitlab.com/ampere2/metalwalls"
"https://gitlab.com/cosmograil/PyCS3"
"https://github.com/landlab/landlab"
"https://github.com/mjsull/chromatiblock/"
"https://github.com/mpievolbio-scicomp/cancer_sim"
"https://github.com/climate-machine/Oceananigans.jl"
"https://github.com/JamesPaynter/PyGRB"
"https://github.com/joglekara/VlaPy"
"https://github.com/google/caliban"
"https://github.com/mdsteiner/EFAtools"
"https://github.com/jeffcsauer/arcos_arcospy_information"
"https://github.com/esa/pagmo2-paper"
"https://github.com/easystats/parameters"
"https://bitbucket.org/miketuri/perl-spice-sim-seus/"
"https://github.com/flintproject/Flint"
"https://github.com/kegiljarhus/pyBEMT"
"https://github.com/CFSAN-Biostatistics/SeroTools"
"https://github.com/actris-cloudnet/cloudnetpy"
"https://github.com/teamPSG/kNN_Sleep_Scorer_kNNSS"
"https://github.com/MikeHeiber/Excimontec"
"https://github.com/pyomeca/pyomeca/"
"https://github.com/qMRLab/qMRLab"
"https://github.com/STEllAR-GROUP/hpx"
"https://gitlab.com/utopia-project/utopia"
"https://github.com/euroargodev/argopy"
"https://gitlab.com/davidtourigny/dynamic-fba"
"https://github.com/ronikobrosly/causal-curve"
"https://github.com/LightForm-group/xrdfit"
"https://github.com/matchms/matchms"
"https://github.com/ginkgo-project/ginkgo"
"https://github.com/YoungFaithful/CapacityExpansion.jl"
"https://github.com/thecodingdoc/neep/"
"https://github.com/biboyd/SALSA"
"https://github.com/kerkelae/disimpy"
"https://github.com/gridap/Gridap.jl"
"https://bitbucket.org/rram/dvrlib/src/joss/"
"https://github.com/sjvrijn/mf2"
"https://gitlab.dune-project.org/dorie/dorie"
"https://gitlab.com/utopia-project/dantro"
"https://github.com/DorianDepriester/mtex2Gmsh"
"https://github.com/akcochrane/TEfits"
"https://github.com/kinnala/scikit-fem"
"https://github.com/mackelab/sbi"
"https://github.com/PfizerRD/sit2standpy"
"https://github.com/cadop/seg1d"
"https://github.com/hope-data-science/tidyfst"
"https://github.com/Sulstice/cocktail-shaker"
"https://github.com/dms-view/dms-view.github.io"
"https://github.com/cicirello/Chips-n-Salsa"
"https://github.com/sambit-giri/tools21cm"
"https://github.com/afeinstein20/stella"
"https://github.com/NicolasHug/Surprise"
"https://github.com/ynop/audiomate"
"https://github.com/OpenWaterAnalytics/pyswmm"
"https://github.com/ECSHackWeek/impedance.py"
"https://github.com/OttaviaE/implicitMeasures/tree/master/inst"
"https://github.com/aiidateam/kiwipy.git"
"https://github.com/stemangiola/tidyHeatmap"
"https://github.com/berenslab/MorphoPy"
"https://github.com/swiftsim/swiftsimio"
"https://github.com/adbar/htmldate"
"https://c4science.ch/source/tamaas/"
"https://github.com/ur-whitelab/hoomd-tf/"
"https://github.com/logological/gpp.git"
"https://github.com/zdelrosario/py_grama"
"https://github.com/keurfonluu/toughio"
"https://github.com/rhenanbartels/hrv"
"https://github.com/csdms/bmi"
"https://github.com/donaldRwilliams/BGGM"
"https://github.com/rgerum/pylustrator"
"https://github.com/easystats/correlation"
"https://github.com/r-spatial/rgee"
"https://github.com/darioizzo/dcgp"
"https://github.com/JonasRieger/ldaPrototype"
"https://github.com/humanfactors/FIPS"
"https://github.com/giswqs/geemap"
"https://gitlab.com/datafold-dev/datafold/"
"https://gricad-gitlab.univ-grenoble-alpes.fr/ttk/spam/"
"https://github.com/covid19datahub/COVID19/"
"https://github.com/BrianAronson/birankr"
"https://github.com/danhey/maelstrom"
"https://github.com/cbirdferrer/collatrix"
"https://github.com/snowformatics/macrobot"
"https://github.com/TomKellyGenetics/graphsim"
"https://github.com/edwardoughton/itmlogic"
"https://github.com/ComtekAdvancedStructures/cmstatr"
"https://github.com/vsoch/gridtest"
"https://github.com/hrwakeford/ExoTiC-ISM"
"https://github.com/klho/FLAM"
"https://github.com/ihrke/pypillometry"
"https://github.com/ropensci/chirps"
"https://github.com/drwaseemsheikh/audiometry.git"
"https://github.com/cosmo-epfl/chemiscope"
"https://github.com/sap218/jabberwocky"
"https://github.com/rajeshrinet/pystokes"
"https://github.com/meenakshi-kushwaha/mmaqshiny"
"https://github.com/martibosch/detectree"
"https://github.com/deezer/spleeter"
"https://github.com/grf-labs/policytree"
"https://github.com/sam-greenwood/taco_vis"
"https://github.com/LiberTEM/LiberTEM"
"https://github.com/samhforbes/PupillometryR"
"https://github.com/Alcampopiano/hypothesize"
"https://github.com/BartoszBartmanski/StoSpa2"
"https://github.com/rgmyr/corebreakout"
"https://github.com/coljac/sensie"
"https://github.com/HajkD/LTRpred"
"https://github.com/mzy2240/ESA"
"https://github.com/KVSlab/turtleFSI.git"
"https://github.com/anmolter/XLUR"
"https://github.com/NREL/bifacial_radiance/"
"https://github.com/deniederhut/niacin"
"https://github.com/teb-model/teb"
"https://github.com/gap-packages/RepnDecomp"
"https://github.com/morganjwilliams/pyrolite"
"https://github.com/MariaTsantaki/FASMA-synthesis"
"https://github.com/samuelduchesne/archetypal"
"https://github.com/arm61/uravu"
"https://github.com/joaomcteixeira/taurenmd"
"https://github.com/DeepRank/pdb2sql"
"https://github.com/oemof/tespy"
"https://github.com/torressa/cspy"
"https://github.com/corybrunson/ggalluvial"
"https://github.com/fat-forensics/fat-forensics"
"https://github.com/dynamicslab/pysindy"
"https://github.com/noraeisner/LATTE"
"https://github.com/babinyurii/recan"
"https://github.com/ryanpmcg/WEPPCLIFF"
"https://github.com/McMasterRS/LFSpy"
"https://github.com/matrix-profile-foundation/joss_paper"
"https://github.com/pmcharrison/psychTestR"
"https://github.com/johannes-titz/mimosa"
"https://github.com/mmrabe/hypr"
"https://github.com/jspaezp/sctree"
"https://github.com/Nicolas-Schmidt/BayesMFSurv"
"https://github.com/thelfer/MFrontGenericInterfaceSupport"
"https://github.com/nkarasiak/MuseoToolBox"
"https://github.com/daffidwilde/matching"
"https://github.com/simonom/PyCHAM"
"https://github.com/sherbold/autorank"
"https://github.com/thesketh/pygen-structures"
"https://github.com/abel-research/ampscan"
"https://github.com/dylan-profiler/visions"
"https://github.com/ross-rotordynamics/ross"
"https://github.com/castelao/CoTeDe"
"https://github.com/trichter/rf"
"https://github.com/zwicker-group/py-pde"
"https://github.com/shah314/graphcoloring"
"https://github.com/pyReef-model/RADWave"
"https://github.com/hema-ted/pyzfs"
"https://github.com/Sage-Bionetworks/mhealthtools"
"https://github.com/UW-Hydro/MetSim"
"https://github.com/pysal/splot"
"https://github.com/gbertoldo/DEPP"
"https://github.com/pySRURGS/pyGOURGS"
"https://github.com/phillima/asniffer/"
"https://github.com/Samreay/Pippin"
"https://github.com/quinngroup/ornet-JOSS"
"https://github.com/USCbiostats/partition"
"https://github.com/cddesja/profileR"
"https://github.com/anowacki/SeisModels.jl"
"https://github.com/Chaste/Chaste"
"https://github.com/WMD-group/CarrierCapture.jl"
"https://github.com/ToyotaResearchInstitute/materialnet"
"https://github.com/madvn/infotheory"
"https://github.com/bmorris3/fleck"
"https://github.com/ThomasPak/pakman"
"https://bitbucket.org/hammurabicode/hamx"
"https://github.com/telatin/covtobed/"
"https://gitlab.com/sails-dev/sails"
"https://github.com/underworldcode/underworld2"
"https://github.com/UNCG-DAISY/psi-collect"
"https://github.com/glm-tools/pyglmnet/"
"https://github.com/CountESS-Project/fqfa/"
"https://github.com/IBM/complex-linear-network-analyzer"
"https://github.com/PhilBoileau/scPCA"
"https://github.com/callat-qcd/espressodb"
"https://github.com/AndrewAnnex/SpiceyPy"
"https://github.com/odegym/neurodiffeq"
"https://github.com/pachamaltese/economiccomplexity"
"https://github.com/kirui93/ScenTrees.jl"
"https://github.com/JuliaText/WordTokenizers.jl/"
"https://github.com/tresoldi/dafsa"
"https://github.com/artivis/manif"
"https://github.com/landlab/landlab"
"https://github.com/akashnag/MDL-Suite"
"https://github.com/provtools/rclean"
"https://github.com/sunpy/sunpy"
"https://github.com/aebergl/MatSurv"
"https://github.com/gus0k/pymarket"
"https://github.com/joshday/OnlineStats.jl"
"https://github.com/ucl-exoplanets/ExoTETHyS"
"https://github.com/iagolemos1/thresholdmodeling"
"https://github.com/landlab/landlab"
"https://github.com/FEST3D/FEST-3D"
"https://github.com/shalinshah1993/temporalDNAbarcodes"
"https://github.com/ybayle/Scyland3D"
"https://github.com/titipata/pubmed_parser"
"https://github.com/1313e/CMasher"
"https://github.com/ornlpmcp/ASCENDS"
"https://github.com/tkchafin/FGTpartitioner"
"https://github.com/ropensci/osfr"
"https://github.com/NorskRegnesentral/shapr"
"https://github.com/johannes-titz/passt"
"https://github.com/oschwengers/referenceseeker"
"https://github.com/ktmeaton/NCBImeta"
"https://github.com/SuperKam91/gns"
"https://github.com/data-exp-lab/widgyts"
"https://github.com/HeloiseS/hoki"
"https://github.com/nismod/cdcam"
"https://gitlab.inria.fr/miet/miet"
"https://github.com/michael-hartmann/caps/"
"https://bitbucket.org/likask/mofem-cephas"
"https://github.com/ropensci/outsider"
"https://github.com/mbdemoraes/moafs"
"https://github.com/ropensci/refsplitr"
"https://github.com/distant-viewing/dvt"
"https://github.com/VarIr/scikit-hubness/"
"https://github.com/fatiando/pooch"
"https://github.com/mikldk/DNAtools"
"https://github.com/indralab/adeft"
"https://github.com/HybriD3-database/MatD3"
"https://github.com/JonasKemmer/AliasFinder"
"https://github.com/larq/larq"
"https://github.com/wingtorres/morphometrix"
"https://github.com/vitorsr/SIHR"
"https://github.com/WyLyu/UPOsHam"
"https://gitlab.com/myqueue/myqueue"
"https://github.com/stfbnc/fathon.git"
"https://github.com/SwathiSheshadri/pose3d"
"https://gitlab.com/materials-modeling/wulffpack"
"https://github.com/dfki-ric/phobos"
"https://github.com/Deech08/whampy"
"https://github.com/ramiyaari/simode/"
"https://github.com/springer-math/Mathematics-of-Epidemics-on-Networks"
"https://github.com/TomasBeuzen/pybeach"
"https://github.com/owlbarn/owl_ode/"
"https://github.com/xanaduAI/thewalrus"
"https://github.com/LRydin/KramersMoyal"
"https://github.com/AMReX-Astro/MAESTROeX"
"https://github.com/snowformatics/BlasterQt"
"https://github.com/elyiorgos/sleeppy"
"https://github.com/mne-tools/mne-bids"
"https://github.com/ytree-project/ytree"
"https://github.com/0todd0000/mwarp1d"
"https://github.com/ImperialCollegeLondon/sharpy"
"https://github.com/jbloomlab/alignparse"
"https://github.com/mlr-org/mlr3"
"https://github.com/lskatz/mashtree"
"https://github.com/cimentadaj/perccalc/"
"https://github.com/alcantarar/dryft"
"https://github.com/BouchardLab/pyuoi"
"https://github.com/USCbiostats/xrnet"
"https://github.com/PhanstielLab/bedtoolsr.git"
"https://github.com/JonasMoss/univariateML"
"https://github.com/TrashBirdEcology/bbsAssistant/"
"https://github.com/GreenScarz/libRL-package"
"https://github.com/PhanstielLab/coralp"
"https://github.com/ropensci/opentripplanner"
"https://gitlab.com/gdetor/genetic_alg"
"https://github.com/jrosen48/tidyLPA"
"https://github.com/complexvariables/ComplexRegions.jl"
"https://github.com/nfrerebeau/tabula"
"https://github.com/paudetseis/Telewavesim"
"https://github.com/dmentipl/plonk"
"https://github.com/seanpue/graphtransliterator"
"https://github.com/marouenbg/ACHR.cu"
"https://github.com/imr-framework/virtual-scanner"
"https://doi.org/10.17605/OSF.IO/3DS6A"
"https://github.com/michellab/BioSimSpace"
"https://github.com/MLHale/eyestream"
"http://github.com/tidyverse/tidyverse"
"https://github.com/HypothesisWorks/hypothesis/"
"https://github.com/junbinzhao/FluxCalR/"
"https://github.com/KaiWenger/memochange"
"https://github.com/martinfleis/momepy"
"https://github.com/dfm/emcee"
"https://github.com/MaciejDanko/hopit"
"https://github.com/ropensci/rnassqs"
"https://github.com/sambitdash/PDFIO.jl"
"https://github.com/earthlab/earthpy"
"https://github.com/jnoynaert/PressureDrop.jl"
"https://github.com/mrgprasad/kanapy"
"https://github.com/ModelOriented/modelStudio"
"https://gitlab.com/tesch1/cppduals"
"https://github.com/matt002/GaitPy"
"https://github.com/srmnitc/pyscal"
"https://github.com/ropensci/workloopR/"
"https://github.com/kahaaga/UncertainData.jl"
"https://www.github.com/ropensci/lightr"
"https://github.com/rmsare/pymccrgb"
"https://github.com/OttaviaE/DscoreApp"
"https://github.com/TerrainBento/umami"
"https://github.com/zfit/phasespace/"
"https://github.com/indigo-dc/DEEPaaS"
"https://github.com/JedS6391/LGP"
"https://github.com/kb-press/ndsplines/"
"https://github.com/ramaniitrgoyal92/Tensegrity_Engineering_Analysis_Master-TEAM-"
"https://github.com/ropensci/rtweet"
"https://github.com/kellykochanski/rescal-snow"
"https://github.com/slithiaote/lepton"
"https://github.com/chand-lab/openEyeTrack"
"https://github.com/paul-buerkner/thurstonianIRT"
"https://github.com/Hazboun6/hasasia"
"https://github.com/UCBerkeleySETI/blimpy"
"https://github.com/AliYoussef96/BCAW-Tool"
"https://github.com/shah314/gamultiknapsack"
"https://github.com/IUNetSci/BotSlayer-CE"
"https://github.com/knaidoo29/mistree"
"https://github.com/scikit-tda/kepler-mapper"
"https://github.com/ezsolti/feign/"
"https://github.com/imr-framework/pypulseq"
"https://github.com/giorginolab/plumed2-pycv/"
"https://github.com/mlindsk/molic"
"https://github.com/PolymerGuy/AXITOM"
"https://github.com/mikldk/ryacas"
"https://github.com/kavir1698/Agents.jl"
"https://github.com/marekborowiec/spruceup"
"https://github.com/GeoStat-Framework/pentapy"
"https://github.com/for-ai/rl"
"https://github.com/JonasMoss/kdensity"
"https://github.com/enzo-project/enzo-dev"
"https://github.com/heilerich/neurone_loader"
"https://github.com/ShanaScogin/BayesPostEst/tree/master"
"https://github.com/duetosymmetry/qnm"
"https://github.com/benmaier/netwulf"
"https://github.com/CosmiQ/CometTS"
"https://github.com/nnadeau/pybotics"
"https://github.com/anderson-cu-bioastronautics/dynamo_realsense-capture"
"https://github.com/lisc-tools/lisc"
"https://github.com/manaakiwhenua/virtualNicheR"
"https://github.com/finsberg/pulse"
"https://github.com/JuliaRheology/RHEOS.jl"
"https://github.com/pySRURGS/pySRURGS"
"https://github.com/SMRuggiero/sbmltoodepy"
"https://github.com/haptork/csaransh"
"https://github.com/giorginolab/vmd_diffusion_coefficient"
"https://github.com/HBClab/NiBetaSeries"
"https://github.com/RuthAngus/stardate"
"https://github.com/martibosch/swisslandstats-geopy"
"https://github.com/richteague/gofish"
"https://github.com/WRF-CMake/WRF"
"https://github.com/livioivil/TextWiller"
"https://github.com/sigsep/open-unmix-paper-joss"
"https://github.com/Niemeyer-Research-Group/pyMARS"
"https://github.com/holgerteichgraeber/TimeSeriesClustering.jl"
"https://github.com/HaemAalborg/ccostr"
"https://github.com/daya6489/SmartEDA"
"https://github.com/maxibor/sourcepredict"
"https://github.com/Cavenfish/autogamess"
"https://github.com/profjsb/deepCR"
"https://github.com/ShanaScogin/modeLLtest"
"https://github.com/mpetroff/pannellum"
"https://github.com/dap-biospec/G3F"
"https://github.com/Samsung/mTower.git"
"https://github.com/singularityhub/singularity-compose"
"https://gitlab.com/eidheim/Simple-Web-Server"
"https://github.com/dap-biospec/KinESim"
"https://github.com/jlustigy/coronagraph"
"https://github.com/fauvernierma/survPen"
"https://github.com/o2r-project/containerit/"
"https://github.com/frycast/studentlife"
"https://github.com/Merck/rtdpy"
"https://github.com/sunpy/drms"
"https://github.com/bihealth/altamisa"
"https://github.com/MarionLegrandLogrami/stacomiR"
"https://github.com/adswa/multimatch_gaze"
"https://github.com/pankajkmishra/NodeLab"
"https://github.com/easystats/bayestestR"
"https://github.com/dblarremore/webweb"
"https://github.com/bids-standard/pybids"
"https://github.com/greta-dev/greta"
"https://github.com/CROSSINGTUD/bc-hybrid-certificates"
"https://gitlab.com/dlr-dw/ontocode"
"https://github.com/ryanstwrt/FRIDGe"
"https://github.com/beringresearch/ivis"
"https://github.com/ropensci/UCSCXenaTools"
"https://github.com/camdavidsonpilon/lifelines"
"https://github.com/bii-absd/tims"
"https://github.com/urmi-21/ORIS"
"https://github.com/fcdimitr/sgtsnepi"
"https://github.com/silvandeleemput/memcnn"
"https://github.com/terrytangyuan/lfda/"
"https://github.com/brmather/pycurious"
"https://github.com/vivo-project/VIVO"
"https://github.com/pierrepo/autoclasswrapper"
"https://github.com/big-data-lab-team/OrpailleCC"
"https://github.com/mmhs013/pyMannKendall"
"https://github.com/zhangning737/rdbsp.git"
"https://github.com/Geodels/bioLEC"
"https://gitlab.com/toposens/public/ros-packages"
"https://github.com/empymod/emg3d"
"https://github.com/kellylab/Fireworks"
"https://github.com/nvihrs14/tcherry"
"https://github.com/xin-huang/SeleDiff"
"https://github.com/TDAmeritrade/stumpy"
"https://github.com/IBT-FMI/COSplay/"
"https://github.com/ECRL/ecabc"
"https://github.com/olivertomic/hoggorm"
"https://github.com/Boyle-Lab/CGIMP"
"https://github.com/IbrahimTanyalcin/lexicon-mono-seq"
"https://github.com/USCbiostats/fmcmc"
"https://github.com/USCbiostats/slurmR"
"https://bitbucket.org/basicsums/basicsums"
"https://github.com/malmans2/oceanspy"
"https://github.com/NBISweden/GUESSmyLT"
"https://github.com/xoolive/traffic"
"https://github.com/ropensci/cde"
"https://github.com/fsobral/RAFF.jl"
"https://github.com/Amalan-ConStat/R-fitODBOD"
"https://github.com/matbesancon/BilevelOptimization.jl"
"https://github.com/rheiland/xml2jupyter"
"https://github.com/OpenGeoVis/PVGeo"
"https://github.com/fboehm/qtl2pleio"
"https://github.com/DrugowitschLab/VBLinLogit"
"https://github.com/MI2DataLab/modelDown"
"https://github.com/easystats/insight"
"https://github.com/connorourke/crystal_torture"
"https://gitlab.inria.fr/azais/treex"
"https://github.com/peterjwatkins/diwanalr"
"https://github.com/NASA-Planetary-Science/sbpy"
"https://github.com/schuyler-smith/phylosmith/"
"https://github.com/Yury-Shevchenko/mad"
"https://bitbucket.org/dolfin-adjoint/pyadjoint"
"https://github.com/university-of-southern-maine-physics/labjack-controller"
"https://github.com/medewitt/tidyqwi/tree/master/inst"
"https://gitlab.com/QComms/cqptoolkit"
"https://github.com/justusschock/delira"
"https://github.com/CSBiology/FSharpGephiStreamer"
"https://github.com/opensim-org/SCONE"
"https://github.com/marshallward/f90nml"
"https://github.com/underworldcode/stripy"
"https://github.com/kgjerde/corporaexplorer"
"https://bitbucket.org/manuela_s/hcp/"
"https://github.com/nproellochs/ReinforcementLearning"
"https://github.com/dahtah/imager"
"https://github.com/mfroeling/QMRITools"
"https://github.com/StingraySoftware/stingray"
"https://github.com/MagneticParticleImaging/MPIFiles.jl"
"https://github.com/1313e/PRISM"
"https://github.com/WMD-group/SMACT/"
"https://github.com/prmiles/pymcmcstat"
"https://github.com/KoesGroup/Snakemake_ChIPseq_PE"
"https://github.com/grantjenks/python-sortedcontainers"
"https://gitlab.com/celliern/scikit-fdiff/"
"https://github.com/ropensci/citesdb"
"https://github.com/steven-murray/hankel/tree/joss-paper"
"https://github.com/nelsonroque/tsfeaturex"
"https://github.com/flor14/paper"
"https://github.com/adrena-lab/Optimising-Light-Source-Positioning"
"https://github.com/MAHDLab/rIP"
"https://github.com/MTgeophysics/mtpy"
"https://github.com/carterenyi/emviz"
"https://github.com/slu-openGIS/areal"
"https://github.com/pyvista/pyvista"
"https://www.github.com/singularityhub/container-tree"
"https://github.com/osorensen/hdme"
"https://github.com/tqdm/tqdm"
"https://github.com/RadioAstronomySoftwareGroup/pyuvsim/"
"https://github.com/EnvModellingGroup/hdrs"
"https://github.com/williamjameshandley/anesthetic"
"https://github.com/AMReX-Codes/amrex"
"https://github.com/davekinkead/reasons"
"https://github.com/skyportal/skyportal"
"https://github.com/brandondube/prysm"
"https://github.com/mikahama/uralicNLP"
"https://www.github.com/vsoch/watchme"
"https://github.com/abatten/fruitbat"
"https://github.com/jlincbio/cred"
"https://github.com/jason-neal/eniric"
"https://github.com/stulp/dmpbbo"
"https://github.com/ModelOriented/pyCeterisParibus"
"https://github.com/dpzwick/ppiclF/"
"https://github.com/justinalsing/dlmmc"
"https://github.com/mviereck/x11docker"
"https://github.com/PMEAL/porespy"
"https://github.com/edifice1989/rocker-c-rex"
"https://github.com/FranzKrah/rGUIDANCE"
"https://github.com/RobWHickman/ggparliament/"
"https://github.com/usnistgov/CEGO"
"https://github.com/shawnbanasick/kade"
"https://github.com/KateHyoung/UTDEventData"
"https://github.com/naturalis/wgs2ncbi"
"https://github.com/Samsung/uJVM/"
"https://github.com/neurodsp-tools/neurodsp"
"https://github.com/lucask07/instrbuilder"
"https://github.com/maximtrp/scikit-posthocs"
"https://github.com/annoviko/pyclustering"
"https://github.com/stenskjaer/samewords"
"https://github.com/PyWavelets/pywt"
"https://github.com/underworldcode/UWGeodynamics"
"https://github.com/JuliaText/Embeddings.jl/"
"https://github.com/mancellin/capytaine"
"https://github.com/ccurtis7/diff_classifier"
"https://github.com/JuliaDiff/TaylorSeries.jl"
"https://github.com/rrwick/Badread"
"https://github.com/hiclib/iced"
"https://github.com/laempy/pyoints"
"https://bitbucket.org/mpi4py/mpi4py-fft"
"https://github.com/NESCent/TraitDB"
"https://github.com/mir-am/LightTwinSVM"
"https://github.com/vallenderlab/MicrobiomeR"
"https://github.com/ailiop/idvf"
"https://github.com/kLabUM/rrcf"
"https://github.com/zabore/riskclustr"
"https://bitbucket.org/ocellarisproject/ocellaris"
"https://github.com/healpy/healpy"
"https://github.com/CFSAN-Biostatistics/vcftoolz"
"https://github.com/stablemarkets/ChiRP"
"https://github.com/DistrictDataLabs/yellowbrick"
"https://github.com/Hoosier-Clusters/clusim"
"https://github.com/3dct/open_iA"
"https://github.com/garrettj403/QMix/"
"https://github.com/KVSlab/morphMan"
"https://github.com/bjmorgan/pyscses"
"https://github.com/mrecos/klrfome"
"https://github.com/ucgmsim/GMSimViz"
"https://github.com/climateequityreferenceproject/cerc-web"
"https://github.com/astrom-tom/dfitspy"
"https://github.com/JuliaMusic/MIDI.jl"
"https://github.com/Non-Contradiction/JuliaCall"
"https://github.com/athrom/CytobankAPIstats"
"https://github.com/ScottKolo/suitesparse-matrix-collection-website"
"https://github.com/litrl/litrl_code"
"https://github.com/atomneb/AtomNeb-idl"
"https://github.com/andrewjpage/tiptoft"
"https://github.com/a-slide/pycoQC"
"https://github.com/tleonardi/bedparse"
"https://github.com/evan-l-munson/SAoTD"
"https://github.com/eendebakpt/oapackage"
"https://github.com/ropensci/tacmagic"
"https://github.com/richteague/eddy"
"https://github.com/seabbs/getTBinR"
"https://github.com/ropensci/emld"
"https://github.com/miykael/atlasreader"
"https://github.com/python-hydro/pyro2"
"https://github.com/mikldk/mitolina"
"https://github.com/lateral/crystal-ball"
"https://github.com/symmy596/SurfinPy"
"https://github.com/pwollstadt/IDTxl"
"https://github.com/jschnab/pyms-plot"
"https://github.com/Chilipp/straditize"
"https://github.com/UofABioinformaticsHub/strandCheckR"
"https://github.com/axopy/axopy"
"https://github.com/andrewthomasjones/BoltzMM"
"https://github.com/bmorris3/arcesetc"
"https://github.com/sivaramambikasaran/HODLR"
"https://github.com/jerryd/gtk-fortran"
"https://github.com/gasparl/citapp_pc"
"https://github.com/bastistician/polyCub"
"https://github.com/compbiocore/RSeqAn"
"https://github.com/meolic/biddy"
"https://github.com/DTUComputeStatisticsAndDataAnalysis/MBPLS"
"https://github.com/fospald/fibergen"
"https://github.com/mathLab/BladeX"
"https://github.com/igarizio/py-school-match"
"https://github.com/rock-learning/pytransform3d"
"https://github.com/mgckind/easyaccess"
"https://github.com/kmarkert/cartoee"
"https://github.com/PGijsbers/GAMA"
"https://github.com/MikeHeiber/KMC_Lattice"
"https://github.com/PoonLab/sierra-local"
"https://github.com/weecology/portalr"
"https://github.com/kdpeterson51/mbir"
"https://github.com/edawson/gfakluge"
"https://github.com/anmuller/CusToM.git"
"https://github.com/ZijieZhaoMMHW/m_mhw1.0"
"https://github.com/danielhatton/eights/"
"https://github.com/rhagenson/swsc"
"https://github.com/wright-group/WrightTools"
"https://github.com/ropensci/stats19"
"https://github.com/zfrenchee/NN-SVG"
"https://github.com/arviz-devs/arviz"
"https://github.com/psychrometrics/psychrolib"
"https://github.com/plooney/kretz"
"https://github.com/IAMconsortium/pyam"
"https://github.com/AnyBody-Research-Group/AnyPyTools"
"https://github.com/xiangfstats/GenieR"
"https://github.com/PingjunChen/tissueloc"
"https://github.com/uqLab/stedy"
"https://github.com/kpeeters/cadabra2"
"https://github.com/KVSlab/bloodflow"
"https://github.com/telegraphic/hickle"
"https://github.com/RuleBasedIntegration/JOSS-Publication"
"https://github.com/wimvanderbauwhede/RefactorF4Acc"
"https://github.com/GPUE-group/GPUE"
"https://github.com/jmborr/idpflex.git"
"https://github.com/altair-viz/altair"
"https://github.com/romunov/wolfexplorer"
"https://github.com/wino6687/SWEpy"
"https://github.com/masspastore/overlapping"
"https://github.com/sumbose/iRF"
"https://github.com/garretrc/ggvoronoi"
"https://github.com/equib/proEQUIB"
"https://github.com/AlexPof/opycleid"
"https://github.com/maxrousseau/pfla"
"https://github.com/joaordaniel/qsort"
"https://github.com/MikeHeiber/Ising_OPV"
"https://github.com/bcgov/ssdtools"
"https://github.com/ropensci/restez"
"https://github.com/rmsare/scarplet"
"https://github.com/cMadan/ElGateau"
"https://github.com/ejolly/pymer4"
"https://bitbucket.org/cdegroot/wediff"
"https://github.com/jeffmacinnes/mobileGazeMapping"
"https://github.com/ropensci/rcites"
"https://github.com/pachamaltese/gravity"
"https://github.com/raphaelvallat/pingouin"
"https://github.com/spectralDNS/shenfun"
"https://github.com/daijiang/hillR"
"https://github.com/otiai10/hotsub"
"https://github.com/simonGreenhill/Treemaker"
"https://github.com/arvestad/alv"
"https://github.com/oxinabox/DataDepsGenerators.jl/"
"https://github.com/gomesdasilva/ACTIN"
"https://github.com/MI2DataLab/survxai"
"https://github.com/fellstat/ipc"
"https://github.com/cicirello/JavaPermutationTools"
"https://github.com/rrrlw/helixvis"
"https://github.com/mattgolub/fixed-point-finder"
"https://github.com/malmaud/TensorFlow.jl"
"https://github.com/arives/rr2"
"https://www.github.com/vc1492a/PyNomaly"
"https://github.com/nlgranger/SeqTools"
"https://github.com/davidnsousa/mcsd"
"https://github.com/hippylib/hippylib"
"https://github.com/terrytangyuan/dml"
"https://github.com/ornlneutronimaging/braggedgemodeling"
"https://github.com/qiime2/q2-sample-classifier"
"https://github.com/prestsoftware/prest"
"https://github.com/ropensci/nasapower"
"https://github.com/wilsoncai1992/data.adapt.multi.test"
"https://github.com/hamedmx/YAD-ILP-Tool"
"https://github.com/hooman650/BioSigKit"
"https://github.com/landlab/landlab"
"https://github.com/cmendl/pytenet"
"https://github.com/schalkdaniel/compboost"
"https://github.com/whimian/pyGeoPressure"
"https://github.com/fatiando/verde"
"https://github.com/drvinceknight/Nashpy"
"https://github.com/raamana/mrivis"
"https://github.com/Geodels/eSCAPE/tree/master/joss"
"https://github.com/stulacy/multistateutils"
"https://github.com/atmoschem/EmissV"
"https://marcoalopez.github.io/GrainSizeTools/"
"https://github.com/quanteda/quanteda"
"https://github.com/Benjamin-Lee/CodonAdaptationIndex"
"https://github.com/volfpeter/localclustering"
"https://github.com/ejhigson/perfectns"
"https://github.com/cole-brokamp/DeGAUSS"
"https://github.com/raamana/graynet"
"https://github.com/dghoshal-lbl/madats"
"https://github.com/ejhigson/dyPolyChord"
"https://github.com/boyanangelov/sdmbench"
"https://github.com/ropensci/piggyback"
"https://github.com/oekosheri/GB_code"
"https://github.com/grg2rsr/SeqPeelSort"
"https://github.com/mpascariu/ungroup"
"https://github.com/scikit-beam/NeuNorm"
"https://github.com/ejhigson/nestcheck"
"https://github.com/scikit-tda/ripser.py"
"https://github.com/calliope-project/calliope"
"https://github.com/pvlib/pvlib-python"
"https://github.com/python-windrose/windrose/"
"https://github.com/jcmgray/quimb"
"https://github.com/dflemin3/approxposterior"
"https://github.com/lmcinnes/umap"
"https://github.com/palash1992/GEM"
"https://github.com/davidnsousa/bor"
"https://github.com/federeghe/chronovise"
"https://github.com/williamjameshandley/fgivenx"
"https://github.com/pdebuyl-lab/tidynamics"
"https://github.com/dirmeier/datastructures"
"https://github.com/MonashBioinformaticsPlatform/RNAsik-pipe"
"https://github.com/gallantlab/cottoncandy"
"https://github.com/emptyport/js-emass"
"https://github.com/steven-murray/powerbox"
"https://gitlab.com/moorepants/skijumpdesign"
"https://github.com/bmorris3/aesop"
"https://github.com/loftytopping/PyBox"
"https://github.com/j-andrews7/Genotify"
"https://github.com/sdtaylor/pyPhenology"
"https://github.com/yt-project/unyt"
"https://github.com/williamsbenjamin/blendR"
"https://github.com/JohnCoene/sigmajs"
"https://github.com/vincentarelbundock/countrycode"
"https://github.com/betteridiot/bamnostic"
"https://github.com/rrrlw/TDAstats"
"https://github.com/lumenlearning/rise"
"https://github.com/ropensci/jstor"
"https://github.com/lucydot/effmass"
"https://www.github.com/vsoch/containershare"
"https://github.com/SMTG-UCL/sumo"
"https://github.com/pdwaggoner/hhi"
"https://github.com/andrewthomasjones/logKDE"
"https://github.com/jarvist/PolaronMobility.jl"
"https://github.com/nismod/ukpopulation"
"https://github.com/momargoh/MCycle"
"https://gitlab.com/costrouc/pysrim"
"https://github.com/robwschlegel/heatwaveR"
"https://bitbucket.org/glotzer/rowan"
"https://github.com/ropensci/nomisr"
"https://github.com/astorfi/speechpy"
"https://github.com/cylc/cylc"
"https://github.com/ECSIM/opem"
"https://github.com/IFB-ElixirFr/edam-browser"
"https://github.com/salabim/salabim"
"https://github.com/lebebr01/pdfsearch"
"https://github.com/ashleefv/BeeNestABM"
"https://github.com/strengejacke/ggeffects"
"https://github.com/dgasmith/opt_einsum"
"https://github.com/dhhagan/py-opc"
"https://github.com/gregreen/dustmaps"
"https://github.com/christophM/iml"
"https://github.com/resibots/limbo"
"https://github.com/ropensci/phylogram"
"https://github.com/ryneches/SuchTree"
"https://github.com/jfjlaros/bin-parser"
"https://github.com/HPAC/matchpy"
"https://github.com/spinicist/QUIT"
"https://github.com/ellessenne/rsimsum/"
"https://www.github.com/vsoch/helpme"
"https://github.com/strengejacke/sjmisc"
"https://github.com/j-faria/kima"
"https://github.com/mlpack/mlpack"
"https://github.com/UniNE-CHYN/mmappickle"
"https://github.com/mirzaevinom/egtplot"
"https://github.com/edoddridge/aronnax"
"https://github.com/SMTG-UCL/galore"
"https://github.com/HajkD/philentropy"
"https://github.com/octapps/octapps"
"https://github.com/jrbourbeau/pyunfold"
"https://github.com/mikldk/disclapmix"
"https://github.com/siravan/fib_tf"
"https://github.com/dit/dit"
"https://github.com/barbagroup/PetIBM"
"https://github.com/sepandhaghighi/pycm"
"https://github.com/vmtk/vmtk"
"https://github.com/DTChuck/HSImage"
"https://github.com/stephenturner/qqman/tree/master/misc/paper"
"https://github.com/anhoej/qicharts2"
"https://github.com/OSC/ondemand"
"https://github.com/bblankrot/ParticleScattering.jl"
"https://github.com/casics/nostril"
"https://github.com/BenjaK/scanstatistics"
"https://github.com/mikldk/malan"
"https://github.com/iferres/phylen"
"https://github.com/achennu/microbenthos"
"https://github.com/jordibc/mapelia"
"https://github.com/ropensci/suppdata"
"https://github.com/FluxML/Flux.jl"
"https://github.com/virgesmith/humanleague"
"https://sourceforge.net/p/mcapl/mcapl_code/ci/master/tree/"
"https://github.com/ropensci/EndoMineR"
"https://github.com/motib/LearnSAT"
"https://github.com/atmoschem/eixport"
"https://github.com/juliohm/GeoStats.jl"
"https://github.com/rasbt/mlxtend"
"https://github.com/ropensci/qualtRics"
"https://github.com/brian-rose/climlab/"
"https://github.com/terrytangyuan/autoplotly"
"https://bitbucket.org/cardosan/brightway2-temporalis"
"https://github.com/caley/OpenEPSim"
"https://github.com/mathLab/EZyRB"
"https://github.com/caseyyoungflesh/MCMCvis"
"https://github.com/microPIECE-team/microPIECE"
"https://github.com/JuliaNLSolvers/Optim.jl"
"https://github.com/bjodah/chempy"
"https://github.com/casics/spiral"
"https://github.com/FastNFT/FNFT"
"https://github.com/fakenmc/micompm"
"https://github.com/ellessenne/comorbidity"
"https://github.com/ropensci/USAboundaries"
"https://github.com/jronayne/PyTransport"
"https://github.com/ropensci/tokenizers"
"https://github.com/poissonconsulting/checkr"
"https://github.com/NiaOrg/NiaPy"
"https://github.com/pynucastro/pynucastro"
"https://github.com/ropensci/ijtiff"
"https://github.com/ropensci/hydroscoper"
"https://github.com/JuliaDynamics/DynamicalSystems.jl"
"https://github.com/WinVector/vtreat/"
"https://github.com/scivision/pymap3d"
"https://github.com/PetoLau/TSrepr"
"https://github.com/adibender/coalitions"
"https://github.com/piermorel/gramm"
"https://github.com/pacificclimate/ClimDown"
"https://github.com/ResidentMario/missingno"
"https://github.com/zedtaha/ivprobit-1.0"
"https://github.com/bmcage/odes/"
"https://github.com/rreinecke/global-gradient-based-groundwater-model"
"https://github.com/h5preserve/h5preserve"
"https://github.com/gibbonCode/GIBBON"
"https://github.com/julia-wrobel/registr"
"https://github.com/mattpitkin/psrqpy"
"https://github.com/jakobbossek/grapherator"
"https://github.com/howardjp/phonics"
"https://github.com/usnistgov/ChebTools"
"https://github.com/PsyChiLin/EFAshiny"
"https://github.com/Edinburgh-Imaging/Masks2Metrics"
"https://github.com/mathLab/PyDMD"
"https://github.com/ropensci/weathercan"
"https://github.com/nterhoeven/reper"
"https://github.com/CoreRobotics/CoreRobotics"
"https://github.com/dartsim/dart"
"https://github.com/Molmed/checkQC"
"https://github.com/neuropsychology/psycho.R"
"https://github.com/danilofreire/prisonbrief"
"https://www.github.com/expfactory/expfactory"
"https://github.com/openclimatedata/pymagicc"
"https://github.com/onecodex/finch-rs"
"https://gitlab.com/cerfacs/batman"
"https://github.com/boisgera/bitstream"
"https://github.com/csu-hmc/opty"
"https://github.com/JoshKarpel/idesolver"
"https://github.com/jeremyrcoyle/origami"
"https://github.com/sns-chops/multiphonon"
"https://github.com/ropensci/drake"
"https://github.com/SCIInstitute/PFEIFER"
"https://github.com/BIOS-IMASL/chesweet"
"https://github.com/scikit-learn-contrib/categorical-encoding"
"https://github.com/bjodah/pyneqsys"
"https://github.com/warrenlr/xmatchview"
"https://github.com/oliviergimenez/GammaGompertzCR"
"https://github.com/sjspielman/phyphy"
"https://github.com/chloroExtractorTeam/chloroExtractor"
"https://github.com/kortschak/arrgh"
"https://github.com/lebebr01/highlightHTML"
"https://github.com/ljvmiranda921/pyswarms"
"https://github.com/databio/simpleCache"
"https://github.com/arfc/moltres"
"https://github.com/paulgovan/BayesianNetwork"
"https://github.com/bjodah/pyodesys"
"https://github.com/ropensci/cleanEHR"
"https://github.com/dseuss/mpnum"
"https://github.com/iljah/hdintegrator"
"https://github.com/ropensci/tidyhydat"
"https://github.com/ITWM-TVFS/Ensight4Matlab"
"https://www.idpoisson.fr/fullswof/"
"https://github.com/kc-lab/dms2dfe"
"https://github.com/xBimTeam/XbimEssentials"
"https://github.com/Genomon-Project/paplot/"
"https://github.com/ropensci/bikedata"
"https://github.com/physicsdavid/mPicker"
"https://github.com/ros-controls/joss_paper"
"https://github.com/barbagroup/pygbe"
"https://github.com/raamana/hiwenet"
"https://github.com/neuropsychology/Neuropsydia.py/"
"https://github.com/virgesmith/UKCensusAPI"
"https://github.com/JuliaDynamics/DynamicalBilliards.jl"
"https://github.com/ornlneutronimaging/ImagingReso"
"https://github.com/weecology/retriever"
"https://github.com/msmbuilder/mdentropy/"
"https://github.com/ropensci/codemetar"
"https://github.com/UniNE-CHYN/hytool"
"https://github.com/scikit-learn-contrib/forest-confidence-interval"
"https://github.com/haythamfayek/MatDL"
"https://github.com/mdbloice/Augmentor"
"https://github.com/hawk31/pyGPGO"
"https://github.com/BenLauwens/ResumableFunctions.jl.git"
"http://mutabit.com/repos.fossil/grafoscopio/"
"https://github.com/cokelaer/spectrum"
"https://github.com/biogo/ncbi"
"https://github.com/bebatut/enasearch"
"https://github.com/genexplain/geneXplainR"
"https://github.com/conradsnicta/armadillo-gmm"
"https://www.github.com/singularityhub/sregistry"
"https://github.com/uglymol/uglymol"
"https://github.com/GabrieleRovigatti/prodest/tree/master/prodest"
"https://github.com/mattbellis/hmis"
"https://github.com/adrn/gala"
"https://github.com/ContextLab/quail"
"https://github.com/timfolsom/hei"
"https://github.com/TJKessler/ECNet"
"https://github.com/ropensci/bomrang"
"https://github.com/jakobbossek/mcMST"
"https://github.com/simupy/simupy"
"https://github.com/sepandhaghighi/pyrgg"
"https://github.com/array-split/array_split"
"https://github.com/ropensci/bittrex/"
"https://github.com/raamana/pyradigm"
"https://github.com/go-hep/hep"
"https://savannah.nongnu.org/projects/complot/"
"https://github.com/ashleefv/ACEInhibPKPD"
"https://github.com/adrn/schwimmbad"
"https://github.com/sequana/sequana/"
"https://github.com/fstrozzi/bioruby-pipengine"
"https://github.com/barbagroup/AmgXWrapper"
"https://github.com/MonashBioinformaticsPlatform/varistran"
"https://github.com/ornl-ndav/django-remote-submission"
"https://github.com/pjamesjoyce/lcopt"
"https://github.com/SebastianoF/bruker2nifti"
"https://github.com/Chilipp/psyplot.git"
"https://github.com/ropensci/visdat"
"https://github.com/xuanxu/nimbus"
"https://github.com/bjmorgan/bsym"
"https://github.com/mwmclean/RefManageR"
"http://github.com/simonvh/genomepy"
"https://github.com/ropensci/iheatmapr"
"https://github.com/scikit-hep/root_numpy"
"https://github.com/TACC/launcher"
"https://github.com/konstantinstadler/country_converter"
"https://github.com/ropensci/rtimicropem"
"https://github.com/dhermes/bezier"
"https://github.com/OpenSpace/OpenSpace"
"https://github.com/nhejazi/biotmle"
"https://github.com/barbagroup/cuIBM"
"https://github.com/bede/kindel"
"https://bitbucket.org/cloopsy/android/"
"https://github.com/domoritz/label_generator"
"https://github.com/dib-lab/khmer"
"https://github.com/ropensci/osmdata"
"https://github.com/ben-aaron188/netanos"
"https://github.com/statsmaths/kerasR"
"https://github.com/jdidion/xphyle"
"https://github.com/roguephysicist/SHGYield"
"https://github.com/rasbt/biopandas"
"https://github.com/rorynolan/filesstrings"
"https://bitbucket.org/meg/cbcbeat"
"https://github.com/andim/noisyopt"
"https://github.com/bjmorgan/lattice_mc"
"https://github.com/kdmurray91/libqcpp"
"https://github.com/eclipse/mosquitto"
"https://github.com/gauteh/ibcao_py"
"https://github.com/howardjp/bumblebees"
"https://github.com/reichlab/flusight"
"https://github.com/luk87/YoungTab"
"https://github.com/cmutel/pandarus"
"https://github.com/sanger-pathogens/saffrontree"
"https://github.com/dgerosa/filltex"
"https://github.com/kweis/acronym"
"https://github.com/kactus2/kactus2dev"
"https://github.com/Auburngrads/learningCurve"
"https://github.com/openclimatedata/pyhector/"
"https://github.com/gboeing/osmnx/"
"https://bitbucket.org/cmutel/brightway2"
"https://github.com/NickC1/skedm"
"https://github.com/elabftw/elabftw"
"https://github.com/msmexplorer/msmexplorer"
"https://github.com/ropensci/getCRUCLdata"
"https://github.com/Effective-Quadratures/Effective-Quadratures/blob/master/joss/paper.md"
"https://github.com/chappers/Ramble/tree/master/joss-paper"
"https://github.com/mpastell/weave.jl"
"https://github.com/scikit-learn-contrib/hdbscan"
"https://github.com/andyyao95/walkr"
"https://github.com/hpchud/vccjs"
"https://github.com/JNisk/AncesTrim"
"https://github.com/sgrieve/spatial_efd"
"https://github.com/migueldvb/cine"
"https://github.com/ropensci/lawn"
"https://github.com/cdcrabtree/plotrr"
"https://github.com/arcaravaggi/remBoot"
"https://github.com/mllg/batchtools"
"https://github.com/HERA-Team/pyuvdata"
"https://github.com/biogo/biogo"
"https://github.com/KitwareMedical/SlicerITKUltrasound"
"https://bitbucket.org/dghoshal/frieda"
"https://github.com/bradleyboehmke/KraljicMatrix"
"https://github.com/keblu/nse"
"https://github.com/biogo/hts"
"https://github.com/ArdiaD/RiskPortfolios"
"https://github.com/ropensci/GSODR"
"https://github.com/abntex/limarka"
"https://github.com/camillescott/shmlast"
"https://github.com/openeventdata/mordecai"
"https://github.com/cvitolo/hddtools/"
"https://github.com/kakearney/ecopath_matlab-pkg"
"https://github.com/SALib/SALib"
"https://github.com/baccuslab/pyret"
"https://github.com/biosustain/optlang"
"https://github.com/openeventdata/petrarch2"
"https://github.com/jeff-goldsmith/vbvs.concurrent"
"https://github.com/cvitolo/fuse"
"https://github.com/rodrigovrgs/cazy-parser"
"https://github.com/genomematt/survivalvolume"
"https://github.com/ElektraInitiative/libelektra"
"https://github.com/n3mo/massmine"
"https://github.com/bmcfee/resampy"
"https://github.com/sanger-pathogens/mlst_check"
"https://github.com/sewardlee337/finreportr"
"https://github.com/eclipse/golo-lang"
"https://github.com/ViDA-NYU/reprozip"
"https://github.com/kdesimone/popeye"
"https://github.com/DoSOCSv2/DoSOCSv2"
"https://github.com/warrenlr/RAILS"
"https://github.com/Dih5/xpecgen"
"https://github.com/ropenscilabs/plater"
"https://github.com/pboesu/rucrdtw"
"https://github.com/DannyArends/CTLmapping"
"https://github.com/chtheodoro/Habfuzz"
"https://github.com/bihealth/vcfpy"
"http://github.com/zmjones/edarf/"
"https://github.com/jiemakel/las"
"https://github.com/carlganz/rintrojs"
"https://github.com/SebastianBocquet/pygtc"
"https://github.com/sanger-pathogens/gff3toembl.git"
"https://github.com/kbarbary/sep"
"https://github.com/paulcon/active_subspaces"
"https://github.com/eddelbuettel/rcppcnpy"
"https://github.com/JonathanAMichaels/hebbRNN"
"https://github.com/ropenscilabs/ezknitr"
"https://github.com/dib-lab/sourmash/"
"https://github.com/sbogutzky/PsychoPhysioPipeline"
"https://github.com/msmbuilder/osprey"
"https://github.com/Groupe-ElementR/cartography"
"https://github.com/samreay/ChainConsumer"
"https://github.com/kehraProject/r_rdefra"
"https://github.com/barbagroup/pygbe"
"https://github.com/zoran-cuckovic/QGIS-visibility-analysis"
"https://github.com/sbogutzky/PsychoPhysioCollector"
"http://github.com/sdwfrost/Gillespie.jl"
"https://github.com/EducationalTestingService/rsmtool"
"https://github.com/michaellevy/gwdegree"
"https://github.com/juliasilge/tidytext"
"https://github.com/cMadan/prism"
"https://github.com/SimonGreenhill/phylogemetric"
"https://github.com/ctjacobs/git-rdm"
"https://github.com/genenetwork/genenetwork2"
"https://github.com/conradsnicta/armadillo/"
"https://github.com/dfm/corner.py"
"https://github.com/phenoscape/scowl"
"https://github.com/PeteHaitch/GenomicTuples"
"https://github.com/harpolea/r3d2"
"http://github.com/genomematt/xenomapper/"
"https://github.com/jtauber/pyuca"
"http://github.com/jakevdp/mst_clustering"
"https://github.com/applicationskeleton/Skeleton"
"https://github.com/diana-hep/carl"