From 6719486b7dda001f276d52b1b48b5677fd8f7469 Mon Sep 17 00:00:00 2001 From: Anish Asthana Date: Mon, 10 Apr 2023 16:50:57 -0400 Subject: [PATCH 01/12] Update python tests job Signed-off-by: Anish Asthana --- .github/build/Containerfile | 12 ++++-- .github/build/requirements-dev.txt | 6 --- .github/build/requirements.txt | 11 ++++++ .../{precommit.yaml => pre-commit.yaml} | 0 .github/workflows/python-app.yml | 38 ------------------- .github/workflows/unit-tests.yml | 21 ++++++++++ README.md | 5 +-- requirements-dev.txt | 6 --- 8 files changed, 42 insertions(+), 57 deletions(-) delete mode 100644 .github/build/requirements-dev.txt create mode 100644 .github/build/requirements.txt rename .github/workflows/{precommit.yaml => pre-commit.yaml} (100%) delete mode 100644 .github/workflows/python-app.yml create mode 100644 .github/workflows/unit-tests.yml delete mode 100644 requirements-dev.txt diff --git a/.github/build/Containerfile b/.github/build/Containerfile index 3c1393ccd..6d5788564 100644 --- a/.github/build/Containerfile +++ b/.github/build/Containerfile @@ -5,10 +5,16 @@ LABEL summary="Toolchain for running pre-commit hooks." \ io.k8s.display-name="Pre-Commit Toolchain" USER root -RUN dnf install nodejs +RUN dnf install nodejs -y && \ + dnf clean all && \ + rm -rf /var/cache/dnf +ADD https://mirror.openshift.com/pub/openshift-v4/clients/oc/latest/linux/oc.tar.gz $TMPDIR/ +RUN tar -C /usr/local/bin -xvf $TMPDIR/oc.tar.gz && \ + chmod +x /usr/local/bin/oc && \ + rm $TMPDIR/oc.tar.gz USER $USERID -COPY requirements-dev.txt /tmp/requirements-dev.txt -RUN python -m pip install -r /tmp/requirements-dev.txt +COPY requirements.txt /tmp/requirements.txt +RUN python -m pip install -r /tmp/requirements.txt CMD bash diff --git a/.github/build/requirements-dev.txt b/.github/build/requirements-dev.txt deleted file mode 100644 index 986bc5127..000000000 --- a/.github/build/requirements-dev.txt +++ /dev/null @@ -1,6 +0,0 @@ -pre-commit -poetry -pytest -pytest-mock -coverage -black==22.3.0 diff --git a/.github/build/requirements.txt b/.github/build/requirements.txt new file mode 100644 index 000000000..3a7351acf --- /dev/null +++ b/.github/build/requirements.txt @@ -0,0 +1,11 @@ +openshift-client==1.0.18 +rich==12.5.1 +ray[default]==2.1.0 +kubernetes==26.1.0 +codeflare-torchx==0.6.0.dev0 +pre-commit +poetry +pytest +pytest-mock +coverage +black==22.3.0 diff --git a/.github/workflows/precommit.yaml b/.github/workflows/pre-commit.yaml similarity index 100% rename from .github/workflows/precommit.yaml rename to .github/workflows/pre-commit.yaml diff --git a/.github/workflows/python-app.yml b/.github/workflows/python-app.yml deleted file mode 100644 index f22e8f224..000000000 --- a/.github/workflows/python-app.yml +++ /dev/null @@ -1,38 +0,0 @@ -# This workflow will install Python dependencies, run tests and lint with a single version of Python -# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions - -name: Python application - -on: - push: - branches: [ main ] - pull_request: - branches: [ main ] - -jobs: - build: - - runs-on: ubuntu-latest - - steps: - - uses: actions/checkout@v2 - - name: Set up Python 3.9 - uses: actions/setup-python@v2 - with: - python-version: 3.9 - - name: Install dependencies - run: | - python -m pip install --upgrade pip - pip install pytest==6.2.4 - pip install pytest-mock==3.6.1 - pip install coverage - pip install black==22.3.0 - if [ -f requirements.txt ]; then pip install -r requirements.txt; fi - - name: Check formatting with black - run: | - black --check . - - name: Test with pytest and check coverage - run: | - coverage run -m --source=src pytest -v tests/unit_test.py - coverage=$(coverage report -m | tail -1 | tail -c 4 | head -c 2) - if (( $coverage < 90 )); then exit 1; else echo "Coverage passed, ${coverage}%"; fi diff --git a/.github/workflows/unit-tests.yml b/.github/workflows/unit-tests.yml new file mode 100644 index 000000000..daf6071d9 --- /dev/null +++ b/.github/workflows/unit-tests.yml @@ -0,0 +1,21 @@ +name: Python Tests + +on: + push: + branches: [ main ] + pull_request: + branches: [ main ] + +jobs: + unit-tests: + + runs-on: ubuntu-latest + container: + image: quay.io/project-codeflare/codeflare-sdk-precommit:v0.0.3 + steps: + - uses: actions/checkout@v3 + - name: Test with pytest and check coverage + run: | + coverage run -m --source=src pytest -v tests/unit_test.py + coverage=$(coverage report -m | tail -1 | tail -c 4 | head -c 2) + if (( $coverage < 90 )); then exit 1; else echo "Coverage passed, ${coverage}%"; fi diff --git a/README.md b/README.md index 6f5e68812..3fa1f808a 100644 --- a/README.md +++ b/README.md @@ -22,10 +22,7 @@ Can be installed via `pip`: `pip install codeflare-sdk` ### Prerequisites We recommend using Python 3.9 for development. -Install development specific dependencies: - `$ pip install -r requirements-dev.txt` - -Additional dependencies can be found in `requirements.txt`: `$ pip install -r requirements.txt` +Install dependencies: `$ pip install -r requirements.txt` ### Pre-commit diff --git a/requirements-dev.txt b/requirements-dev.txt deleted file mode 100644 index 986bc5127..000000000 --- a/requirements-dev.txt +++ /dev/null @@ -1,6 +0,0 @@ -pre-commit -poetry -pytest -pytest-mock -coverage -black==22.3.0 From 779bf2b2cac956e7eb10abcada61822234d9fb9d Mon Sep 17 00:00:00 2001 From: Fiona Waters Date: Mon, 14 Aug 2023 11:17:56 +0100 Subject: [PATCH 02/12] refactor to use poetry Co-authored-by: Anish Asthana aasthana@redhat.com Co-authored-by: Fiona Waters fiwaters6@gmail.com --- .github/build/Containerfile | 10 +- .github/build/README.md | 2 +- .github/build/pyproject.toml | 44 + .gitignore | 1 - README.md | 7 +- poetry.lock | 2451 ++++++++++++++++++++++++++++++++++ requirements.txt | 8 - 7 files changed, 2509 insertions(+), 14 deletions(-) create mode 100644 .github/build/pyproject.toml create mode 100644 poetry.lock delete mode 100644 requirements.txt diff --git a/.github/build/Containerfile b/.github/build/Containerfile index 6d5788564..9532d3280 100644 --- a/.github/build/Containerfile +++ b/.github/build/Containerfile @@ -14,7 +14,11 @@ RUN tar -C /usr/local/bin -xvf $TMPDIR/oc.tar.gz && \ rm $TMPDIR/oc.tar.gz USER $USERID -COPY requirements.txt /tmp/requirements.txt -RUN python -m pip install -r /tmp/requirements.txt +RUN pip3 install poetry +COPY pyproject.toml ./ +RUN poetry install -CMD bash +#COPY requirements.txt /tmp/requirements.txt +#RUN python -m pip install -r /tmp/requirements.txt + +CMD bash \ No newline at end of file diff --git a/.github/build/README.md b/.github/build/README.md index 9273edb82..48af15121 100644 --- a/.github/build/README.md +++ b/.github/build/README.md @@ -1,3 +1,3 @@ # Pre-Commit Build Artifacts -This directory contains the artifacts required to build the codeflare-sdk pre-commit image. As of right now, we will need to manually update `requirements-dev.txt` in this directory as well. +This directory contains the artifacts required to build the codeflare-sdk pre-commit image. \ No newline at end of file diff --git a/.github/build/pyproject.toml b/.github/build/pyproject.toml new file mode 100644 index 000000000..b2167e999 --- /dev/null +++ b/.github/build/pyproject.toml @@ -0,0 +1,44 @@ +[tool.poetry] +name = "codeflare-sdk" +version = "0.0.0-dev" +description = "Python SDK for codeflare client" + +license = "Apache-2.0" + +authors = [ + "Michael Clifford ", + "Mustafa Eyceoz ", + "Abhishek Malvankar ", + "Atin Sood ", +] + +readme = 'README.md' + +repository = "https://github.com/project-codeflare/codeflare-sdk" +homepage = "https://github.com/project-codeflare/codeflare-sdk" + +keywords = ['codeflare', 'python', 'sdk', 'client', 'batch', 'scale'] + +[tool.poetry.dependencies] +python = ">=3.8,<4.0" +openshift-client = "1.0.18" +rich = "^12.5" +ray = {version = "2.5.0", extras = ["default"]} +kubernetes = ">= 25.3.0, < 27" +codeflare-torchx = "0.6.0.dev0" +cryptography = "40.0.2" +executing = "1.2.0" +pydantic = "< 2" +pre-commit = "3.3.3" + +[tool.poetry.group.docs] +optional = true + +[tool.poetry.group.docs.dependencies] +pdoc3 = "0.10.0" + +[tool.poetry.group.test.dependencies] +pytest = "7.4.0" +coverage = "7.2.7" +pytest-mock = "3.11.1" +black = "22.3.0" diff --git a/.gitignore b/.gitignore index fbb31b2b9..9b0018c2c 100644 --- a/.gitignore +++ b/.gitignore @@ -4,7 +4,6 @@ __pycache__/ .coverage Pipfile Pipfile.lock -poetry.lock .venv* build/ tls-cluster-namespace diff --git a/README.md b/README.md index 3fa1f808a..b20bd5e6e 100644 --- a/README.md +++ b/README.md @@ -22,7 +22,12 @@ Can be installed via `pip`: `pip install codeflare-sdk` ### Prerequisites We recommend using Python 3.9 for development. -Install dependencies: `$ pip install -r requirements.txt` +Install dependencies: `poetry install` +This will install all requirements as specified in the poetry.lock file. + +If you require a requirements.txt file you can run: + +`poetry export -f requirements.txt --output requirements.txt --without-hashes` ### Pre-commit diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 000000000..9767a715f --- /dev/null +++ b/poetry.lock @@ -0,0 +1,2451 @@ +# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. + +[[package]] +name = "aiohttp" +version = "3.8.5" +description = "Async http client/server framework (asyncio)" +optional = false +python-versions = ">=3.6" +files = [ + {file = "aiohttp-3.8.5-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:a94159871304770da4dd371f4291b20cac04e8c94f11bdea1c3478e557fbe0d8"}, + {file = "aiohttp-3.8.5-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:13bf85afc99ce6f9ee3567b04501f18f9f8dbbb2ea11ed1a2e079670403a7c84"}, + {file = "aiohttp-3.8.5-cp310-cp310-macosx_11_0_arm64.whl", hash = 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"pytest-flake8", "pytest-mypy (>=0.9.1)"] + +[metadata] +lock-version = "2.0" +python-versions = "^3.7" +content-hash = "53b760742497ab5536551d316f6844e60ade48e3e3b9172b0ed4ba71ee608852" diff --git a/requirements.txt b/requirements.txt deleted file mode 100644 index c62afb19f..000000000 --- a/requirements.txt +++ /dev/null @@ -1,8 +0,0 @@ -openshift-client==1.0.18 -rich==12.5.1 -ray[default]==2.5.0 -kubernetes>=25.3.0,<27 -codeflare-torchx==0.6.0.dev1 -pydantic<2 # 2.0+ broke ray[default] see detail: https://github.com/ray-project/ray/pull/37000 -cryptography==40.0.2 -executing==1.2.0 From 4ff2f368a3dc6bdc995cbabb98a027b1ceaa7945 Mon Sep 17 00:00:00 2001 From: Fiona Waters Date: Wed, 16 Aug 2023 16:59:41 +0100 Subject: [PATCH 03/12] making test dependencies optional, and updating readme accordingly --- README.md | 8 +++++++- pyproject.toml | 3 +++ 2 files changed, 10 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index b20bd5e6e..dc5cb1476 100644 --- a/README.md +++ b/README.md @@ -23,7 +23,13 @@ Can be installed via `pip`: `pip install codeflare-sdk` We recommend using Python 3.9 for development. Install dependencies: `poetry install` -This will install all requirements as specified in the poetry.lock file. +This will install standard requirements as specified in the poetry.lock file. Test and docs dependencies are optional. + +To include test dependencies run: `poetry install --with test` + +To include docs dependencies run: `poetry instal --with docs` + +To include test and docs dependencies run: `poetry install --with test,docs` If you require a requirements.txt file you can run: diff --git a/pyproject.toml b/pyproject.toml index 52c237d21..5a2dbc311 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -36,6 +36,9 @@ optional = true [tool.poetry.group.docs.dependencies] pdoc3 = "0.10.0" +[tool.poetry.group.test] +optional = true + [tool.poetry.group.test.dependencies] pytest = "7.4.0" coverage = "7.2.7" From 050664a3d2ebdf48ae739e89a097ea1464296906 Mon Sep 17 00:00:00 2001 From: Fiona Waters Date: Tue, 22 Aug 2023 10:58:55 +0100 Subject: [PATCH 04/12] removing requirements files and updating readme to build from root dir --- .github/build/Containerfile | 5 +--- .github/build/README.md | 4 +++- .github/build/pyproject.toml | 44 ---------------------------------- .github/build/requirements.txt | 11 --------- 4 files changed, 4 insertions(+), 60 deletions(-) delete mode 100644 .github/build/pyproject.toml delete mode 100644 .github/build/requirements.txt diff --git a/.github/build/Containerfile b/.github/build/Containerfile index 9532d3280..a6e91faa9 100644 --- a/.github/build/Containerfile +++ b/.github/build/Containerfile @@ -18,7 +18,4 @@ RUN pip3 install poetry COPY pyproject.toml ./ RUN poetry install -#COPY requirements.txt /tmp/requirements.txt -#RUN python -m pip install -r /tmp/requirements.txt - -CMD bash \ No newline at end of file +CMD bash diff --git a/.github/build/README.md b/.github/build/README.md index 48af15121..5cdba731f 100644 --- a/.github/build/README.md +++ b/.github/build/README.md @@ -1,3 +1,5 @@ # Pre-Commit Build Artifacts -This directory contains the artifacts required to build the codeflare-sdk pre-commit image. \ No newline at end of file +This directory contains the artifacts required to build the codeflare-sdk pre-commit image. + +To build the image run `podman build -f .github/build/Containerfile .` from the root directory. \ No newline at end of file diff --git a/.github/build/pyproject.toml b/.github/build/pyproject.toml deleted file mode 100644 index b2167e999..000000000 --- a/.github/build/pyproject.toml +++ /dev/null @@ -1,44 +0,0 @@ -[tool.poetry] -name = "codeflare-sdk" -version = "0.0.0-dev" -description = "Python SDK for codeflare client" - -license = "Apache-2.0" - -authors = [ - "Michael Clifford ", - "Mustafa Eyceoz ", - "Abhishek Malvankar ", - "Atin Sood ", -] - -readme = 'README.md' - -repository = "https://github.com/project-codeflare/codeflare-sdk" -homepage = "https://github.com/project-codeflare/codeflare-sdk" - -keywords = ['codeflare', 'python', 'sdk', 'client', 'batch', 'scale'] - -[tool.poetry.dependencies] -python = ">=3.8,<4.0" -openshift-client = "1.0.18" -rich = "^12.5" -ray = {version = "2.5.0", extras = ["default"]} -kubernetes = ">= 25.3.0, < 27" -codeflare-torchx = "0.6.0.dev0" -cryptography = "40.0.2" -executing = "1.2.0" -pydantic = "< 2" -pre-commit = "3.3.3" - -[tool.poetry.group.docs] -optional = true - -[tool.poetry.group.docs.dependencies] -pdoc3 = "0.10.0" - -[tool.poetry.group.test.dependencies] -pytest = "7.4.0" -coverage = "7.2.7" -pytest-mock = "3.11.1" -black = "22.3.0" diff --git a/.github/build/requirements.txt b/.github/build/requirements.txt deleted file mode 100644 index 3a7351acf..000000000 --- a/.github/build/requirements.txt +++ /dev/null @@ -1,11 +0,0 @@ -openshift-client==1.0.18 -rich==12.5.1 -ray[default]==2.1.0 -kubernetes==26.1.0 -codeflare-torchx==0.6.0.dev0 -pre-commit -poetry -pytest -pytest-mock -coverage -black==22.3.0 From 0d80fc519e117447e156ad39707a2331f120da62 Mon Sep 17 00:00:00 2001 From: Fiona Waters Date: Mon, 28 Aug 2023 09:45:46 +0100 Subject: [PATCH 05/12] updating coverage-badge.yaml --- .github/workflows/coverage-badge.yaml | 6 ++---- README.md | 4 +++- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/.github/workflows/coverage-badge.yaml b/.github/workflows/coverage-badge.yaml index 625576fca..692998afd 100644 --- a/.github/workflows/coverage-badge.yaml +++ b/.github/workflows/coverage-badge.yaml @@ -20,10 +20,8 @@ jobs: - name: Install dependencies run: | python -m pip install --upgrade pip - pip install pytest==6.2.4 - pip install pytest-mock==3.6.1 - pip install coverage - if [ -f requirements.txt ]; then pip install -r requirements.txt; fi + pip install poetry + poetry install --with test - name: Generate coverage report run: | coverage run -m --source=src pytest -v tests/unit_test.py diff --git a/README.md b/README.md index dc5cb1476..de8a97d43 100644 --- a/README.md +++ b/README.md @@ -27,7 +27,7 @@ This will install standard requirements as specified in the poetry.lock file. Te To include test dependencies run: `poetry install --with test` -To include docs dependencies run: `poetry instal --with docs` +To include docs dependencies run: `poetry install --with docs` To include test and docs dependencies run: `poetry install --with test,docs` @@ -39,6 +39,8 @@ If you require a requirements.txt file you can run: We use pre-commit to make sure the code is consistently formatted. To make sure that pre-commit is run every time you commit changes, simply run `pre-commit install` +To build the codeflare-sdk pre-commit image run `podman build -f .github/build/Containerfile .` from the root directory. + ### Testing - To install codeflare-sdk in editable mode, run `pip install -e .` from the repo root. From 19317a3b71994193191d8ecd6e83e64cf57f2da8 Mon Sep 17 00:00:00 2001 From: Fiona Waters Date: Mon, 28 Aug 2023 14:09:26 +0100 Subject: [PATCH 06/12] fixing failing pre-commit check --- .github/build/README.md | 4 ++-- README.md | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/build/README.md b/.github/build/README.md index 5cdba731f..9731ef308 100644 --- a/.github/build/README.md +++ b/.github/build/README.md @@ -1,5 +1,5 @@ # Pre-Commit Build Artifacts -This directory contains the artifacts required to build the codeflare-sdk pre-commit image. +This directory contains the artifacts required to build the codeflare-sdk pre-commit image. -To build the image run `podman build -f .github/build/Containerfile .` from the root directory. \ No newline at end of file +To build the image run `podman build -f .github/build/Containerfile .` from the root directory. diff --git a/README.md b/README.md index de8a97d43..c3e5d5d87 100644 --- a/README.md +++ b/README.md @@ -22,7 +22,7 @@ Can be installed via `pip`: `pip install codeflare-sdk` ### Prerequisites We recommend using Python 3.9 for development. -Install dependencies: `poetry install` +Install dependencies: `poetry install` This will install standard requirements as specified in the poetry.lock file. Test and docs dependencies are optional. To include test dependencies run: `poetry install --with test` From 232054708bd2b4922c5e058a185f584a6c9697c3 Mon Sep 17 00:00:00 2001 From: Fiona Waters Date: Tue, 29 Aug 2023 08:46:18 +0100 Subject: [PATCH 07/12] update unit test workflow --- .github/workflows/unit-tests.yml | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/.github/workflows/unit-tests.yml b/.github/workflows/unit-tests.yml index daf6071d9..7c181991d 100644 --- a/.github/workflows/unit-tests.yml +++ b/.github/workflows/unit-tests.yml @@ -14,6 +14,12 @@ jobs: image: quay.io/project-codeflare/codeflare-sdk-precommit:v0.0.3 steps: - uses: actions/checkout@v3 + - name: Install dependencies + run: | + python -m pip install --upgrade pip + pip3 install poetry + poetry lock --no-update + poetry install --with test - name: Test with pytest and check coverage run: | coverage run -m --source=src pytest -v tests/unit_test.py From 07f5eaa84ffed83f596c1400e2e728a0943942f5 Mon Sep 17 00:00:00 2001 From: Fiona Waters Date: Tue, 29 Aug 2023 16:05:01 +0100 Subject: [PATCH 08/12] updating unit-test.yml --- .github/workflows/unit-tests.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) mode change 100644 => 100755 .github/workflows/unit-tests.yml diff --git a/.github/workflows/unit-tests.yml b/.github/workflows/unit-tests.yml old mode 100644 new mode 100755 index 7c181991d..fcd22e9c2 --- a/.github/workflows/unit-tests.yml +++ b/.github/workflows/unit-tests.yml @@ -22,6 +22,6 @@ jobs: poetry install --with test - name: Test with pytest and check coverage run: | - coverage run -m --source=src pytest -v tests/unit_test.py + poetry run coverage run -m --source=src pytest -v tests/unit_test.py coverage=$(coverage report -m | tail -1 | tail -c 4 | head -c 2) if (( $coverage < 90 )); then exit 1; else echo "Coverage passed, ${coverage}%"; fi From 514166f650a3cf0ba099594467cac97b80b1f94b Mon Sep 17 00:00:00 2001 From: Fiona Waters Date: Thu, 7 Sep 2023 11:12:53 +0100 Subject: [PATCH 09/12] adding pytorch-lightning dependency --- poetry.lock | 342 ++++++++++++++++++++++++++++++++++--------------- pyproject.toml | 3 +- 2 files changed, 242 insertions(+), 103 deletions(-) diff --git a/poetry.lock b/poetry.lock index 9767a715f..02235ac15 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. 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+python-versions = "^3.8" +content-hash = "39b6e2a2b976633df18fa59b28a2b0dc7e8e05cda4629bd37c868b993742d750" diff --git a/pyproject.toml b/pyproject.toml index 5a2dbc311..cd5facf72 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -20,7 +20,7 @@ homepage = "https://github.com/project-codeflare/codeflare-sdk" keywords = ['codeflare', 'python', 'sdk', 'client', 'batch', 'scale'] [tool.poetry.dependencies] -python = "^3.7" +python = "^3.8" openshift-client = "1.0.18" rich = "^12.5" ray = {version = "2.5.0", extras = ["default"]} @@ -29,6 +29,7 @@ codeflare-torchx = "0.6.0.dev1" cryptography = "40.0.2" executing = "1.2.0" pydantic = "< 2" +pytorch-lightning = "^2.0.8" [tool.poetry.group.docs] optional = true From 2e4240a511e26f06a493b1345a2d667893ad1064 Mon Sep 17 00:00:00 2001 From: Fiona Waters Date: Thu, 7 Sep 2023 12:04:12 +0100 Subject: [PATCH 10/12] Removing poetry virtual env in test container and updating README.md --- .github/workflows/unit-tests.yml | 10 +++++++--- README.md | 15 +++++++++------ 2 files changed, 16 insertions(+), 9 deletions(-) diff --git a/.github/workflows/unit-tests.yml b/.github/workflows/unit-tests.yml index fcd22e9c2..d62c0eff3 100755 --- a/.github/workflows/unit-tests.yml +++ b/.github/workflows/unit-tests.yml @@ -14,14 +14,18 @@ jobs: image: quay.io/project-codeflare/codeflare-sdk-precommit:v0.0.3 steps: - uses: actions/checkout@v3 + - name: Install poetry + run: pip install poetry + - uses: actions/setup-python@v4 + with: + python-version: '3.8' - name: Install dependencies run: | - python -m pip install --upgrade pip - pip3 install poetry + poetry config virtualenvs.create false poetry lock --no-update poetry install --with test - name: Test with pytest and check coverage run: | - poetry run coverage run -m --source=src pytest -v tests/unit_test.py + coverage run -m --source=src pytest -v tests/unit_test.py coverage=$(coverage report -m | tail -1 | tail -c 4 | head -c 2) if (( $coverage < 90 )); then exit 1; else echo "Coverage passed, ${coverage}%"; fi diff --git a/README.md b/README.md index c3e5d5d87..e64555d7c 100644 --- a/README.md +++ b/README.md @@ -22,14 +22,17 @@ Can be installed via `pip`: `pip install codeflare-sdk` ### Prerequisites We recommend using Python 3.9 for development. -Install dependencies: `poetry install` + +#### Install dependencies: + - run: `poetry install` + This will install standard requirements as specified in the poetry.lock file. Test and docs dependencies are optional. -To include test dependencies run: `poetry install --with test` +- To include test dependencies run: `poetry install --with test` -To include docs dependencies run: `poetry install --with docs` +- To include docs dependencies run: `poetry install --with docs` -To include test and docs dependencies run: `poetry install --with test,docs` +- To include test and docs dependencies run: `poetry install --with test,docs` If you require a requirements.txt file you can run: @@ -44,13 +47,13 @@ To build the codeflare-sdk pre-commit image run `podman build -f .github/build/C ### Testing - To install codeflare-sdk in editable mode, run `pip install -e .` from the repo root. -- To run the unit tests, run `pytest -v tests/unit_test.py` +- To run the unit tests, run `poetry run pytest -v tests/unit_test.py` - Any new test functions/scripts can be added into the `tests` folder - NOTE: Functional tests coming soon, will live in `tests/func_test.py` #### Code Coverage -- Run tests with the following command: `coverage run -m --source=src pytest tests/unit_test.py` +- Run tests with the following command: `poetry run coverage run -m --source=src pytest tests/unit_test.py` - To then view a code coverage report w/ missing lines, run `coverage report -m` ### Code Formatting From 003e07c0e719c7a206b325d09e538e6876315fef Mon Sep 17 00:00:00 2001 From: Fiona Waters Date: Fri, 8 Sep 2023 09:50:36 +0100 Subject: [PATCH 11/12] updating READNE.md to use poetry shell --- README.md | 10 +++++++--- 1 file changed, 7 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index e64555d7c..e72512dd0 100644 --- a/README.md +++ b/README.md @@ -21,9 +21,13 @@ Can be installed via `pip`: `pip install codeflare-sdk` ### Prerequisites -We recommend using Python 3.9 for development. +We recommend using Python 3.9 for development, along with Poetry. +Create a Poetry virtual environment with the required Python version 3.9, and run all commands within this environment. + + - run: `poetry shell` #### Install dependencies: + - run: `poetry install` This will install standard requirements as specified in the poetry.lock file. Test and docs dependencies are optional. @@ -47,13 +51,13 @@ To build the codeflare-sdk pre-commit image run `podman build -f .github/build/C ### Testing - To install codeflare-sdk in editable mode, run `pip install -e .` from the repo root. -- To run the unit tests, run `poetry run pytest -v tests/unit_test.py` +- To run the unit tests, run `pytest -v tests/unit_test.py` - Any new test functions/scripts can be added into the `tests` folder - NOTE: Functional tests coming soon, will live in `tests/func_test.py` #### Code Coverage -- Run tests with the following command: `poetry run coverage run -m --source=src pytest tests/unit_test.py` +- Run tests with the following command: `coverage run -m --source=src pytest tests/unit_test.py` - To then view a code coverage report w/ missing lines, run `coverage report -m` ### Code Formatting From 57d2dac80bf78abd09719d968720616c67ca159a Mon Sep 17 00:00:00 2001 From: Fiona Waters Date: Wed, 13 Sep 2023 10:12:16 +0100 Subject: [PATCH 12/12] updating containerfile and coverage-badge workflow --- .github/build/Containerfile | 3 ++- .github/workflows/coverage-badge.yaml | 2 ++ poetry.lock | 8 ++++---- 3 files changed, 8 insertions(+), 5 deletions(-) diff --git a/.github/build/Containerfile b/.github/build/Containerfile index a6e91faa9..8345fbe12 100644 --- a/.github/build/Containerfile +++ b/.github/build/Containerfile @@ -14,7 +14,8 @@ RUN tar -C /usr/local/bin -xvf $TMPDIR/oc.tar.gz && \ rm $TMPDIR/oc.tar.gz USER $USERID -RUN pip3 install poetry +RUN pip3 install poetry && \ + poetry config virtualenvs.create false COPY pyproject.toml ./ RUN poetry install diff --git a/.github/workflows/coverage-badge.yaml b/.github/workflows/coverage-badge.yaml index 692998afd..a58ab8dbe 100644 --- a/.github/workflows/coverage-badge.yaml +++ b/.github/workflows/coverage-badge.yaml @@ -21,6 +21,8 @@ jobs: run: | python -m pip install --upgrade pip pip install poetry + poetry config virtualenvs.create false + poetry lock --no-update poetry install --with test - name: Generate coverage report run: | diff --git a/poetry.lock b/poetry.lock index 02235ac15..531f5a857 100644 --- a/poetry.lock +++ b/poetry.lock @@ -424,12 +424,12 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""} [[package]] name = "codeflare-torchx" -version = "0.6.0.dev0" +version = "0.6.0.dev1" description = "TorchX SDK and Components" optional = false python-versions = ">=3.7" files = [ - {file = "codeflare_torchx-0.6.0.dev0-py3-none-any.whl", hash = "sha256:fd6b2ee084097bc0e84a4b4b44772a7c44fc90e3490a93ec804ed088534cbd0a"}, + {file = "codeflare_torchx-0.6.0.dev1-py3-none-any.whl", hash = "sha256:a03bf570c775cb7fc7787a436ef5a76c726669e287af510513c5bc03033d1fca"}, ] [package.dependencies] @@ -444,7 +444,7 @@ tabulate = "*" urllib3 = ">=1.21.1,<1.27" [package.extras] -dev = ["aiobotocore (==2.4.2)", "ax-platform[mysql] (==0.2.3)", "black (==23.3.0)", "boto3 (==1.24.59)", "captum (>=0.4.0)", "flake8 (==3.9.0)", "fsspec[s3] (==2023.1.0)", "google-api-core", "google-cloud-batch (>=0.5.0)", "google-cloud-logging (>=3.0.0)", "google-cloud-runtimeconfig (>=0.33.2)", "hydra-core", "ipython", "kfp (==1.8.9)", "mlflow-skinny", "moto (==4.1.6)", "pyre-check", "pyre-extensions", "pytest", "pytorch-lightning (==1.5.10)", "ray[default]", "torch (>=1.10.0)", "torch-model-archiver (>=0.4.2)", "torchmetrics (<0.11.0)", "torchserve (>=0.4.2)", "torchtext (>=0.11.0)", "torchvision (>=0.11.1)", "ts (==0.5.1)", "usort (==1.0.2)"] +dev = ["aiobotocore (==2.4.2)", "ax-platform[mysql] (==0.2.3)", "black (==23.3.0)", "boto3 (==1.24.59)", "captum (>=0.4.0)", "flake8 (==3.9.0)", "fsspec[s3] (==2023.1.0)", "google-api-core", "google-cloud-batch (>=0.5.0)", "google-cloud-logging (>=3.0.0)", "google-cloud-runtimeconfig (>=0.33.2)", "hydra-core", "ipython", "kfp (==1.8.22)", "mlflow-skinny", "moto (==4.1.6)", "pyre-check", "pyre-extensions", "pytest", "pytorch-lightning (==1.5.10)", "ray[default]", "torch (>=1.10.0)", "torch-model-archiver (>=0.4.2)", "torchmetrics (<0.11.0)", "torchserve (>=0.4.2)", "torchtext (>=0.11.0)", "torchvision (>=0.11.1)", "ts (==0.5.1)", "usort (==1.0.2)"] gcp-batch = ["google-cloud-batch (>=0.5.0)", "google-cloud-logging (>=3.0.0)", "google-cloud-runtimeconfig (>=0.33.2)"] kfp = ["kfp (==1.6.2)"] kubernetes = ["kubernetes (>=11)"] @@ -2586,4 +2586,4 @@ testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more [metadata] lock-version = "2.0" python-versions = "^3.8" -content-hash = "39b6e2a2b976633df18fa59b28a2b0dc7e8e05cda4629bd37c868b993742d750" +content-hash = "18e18b306f8c91c2d0f995531cf7f20be3180815e8c82ac1d1fc2913d0bc90d8"