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jsheunisjsheunis
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Merge pull request #40 from psychoinformatics-de/data
Wide-ranging updates
2 parents f2ac917 + 1fb3197 commit 6267ea7

21 files changed

+694
-194
lines changed

‎src/App.vue

Lines changed: 11 additions & 15 deletions
Original file line numberDiff line numberDiff line change
@@ -30,34 +30,30 @@
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<script setup>
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import { ref, provide, onMounted} from 'vue';
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import { useGraphData } from '@/composables/graphdata';
33-
import { DLTHING, XSD } from '@/modules/namespaces';
34-
import rdf from 'rdf-ext';
33+
import { useClassData } from '@/composables/classdata';
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var tab = ref(1)
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const { graphData, getGraphData, graphPrefixes, serializedGraphData, graphTriples } = useGraphData()
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const { classData, getClassData, classPrefixes, serializedClassData, classTriples } = useClassData()
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provide('graphData', graphData)
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provide('serializedGraphData', serializedGraphData)
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provide('graphTriples', graphTriples)
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provide('graphPrefixes', graphPrefixes)
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provide('serializedClassData', serializedClassData)
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provide('classData', classData)
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provide('classPrefixes', classPrefixes)
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onMounted( async () => {
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console.log("App.vue async onmounted...")
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console.log("Getting graph data...")
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const penguins = new URL("@/assets/distribution-penguins.ttl", import.meta.url).href
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await getGraphData(penguins)
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console.log(graphTriples.length)
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console.log(graphData.size)
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const mypersonB = rdf.grapoi({ dataset: graphData })
55-
.hasOut(DLTHING.meta_type, rdf.literal('dldist:Person', XSD.anyURI))
56-
.quads();
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console.log('Persons in Penguin Dataset, using literal in query:')
58-
for (const quad of mypersonB) {
59-
console.log(`\t${quad.subject.value}`)
60-
}
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console.log("Getting class hierarchy data...")
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const classes = new URL("@/assets/class_hierarchy.ttl", import.meta.url).href
55+
await getClassData(classes)
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console.log(classTriples.length)
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console.log(classData.size)
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})
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</script>

‎src/assets/class_hierarchy.ttl

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@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
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<https://concepts.datalad.org/s/distribution/unreleased/DataService> rdfs:subClassOf <https://concepts.datalad.org/s/distribution/unreleased/Resource> .
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<https://concepts.datalad.org/s/distribution/unreleased/LicenseDocument> rdfs:subClassOf <https://concepts.datalad.org/s/prov/unreleased/Entity> .
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<https://concepts.datalad.org/s/distribution/unreleased/Organization> rdfs:subClassOf <https://concepts.datalad.org/s/prov/unreleased/Agent> .
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<https://concepts.datalad.org/s/distribution/unreleased/Parameter> rdfs:subClassOf <https://concepts.datalad.org/s/thing/unreleased/Characteristic> .
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<https://concepts.datalad.org/s/distribution/unreleased/Person> rdfs:subClassOf <https://concepts.datalad.org/s/prov/unreleased/Agent> .
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<https://concepts.datalad.org/s/prov/unreleased/Activity> rdfs:subClassOf <https://concepts.datalad.org/s/thing/unreleased/Thing> .
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<https://concepts.datalad.org/s/prov/unreleased/Attribution> rdfs:subClassOf <https://concepts.datalad.org/s/prov/unreleased/AgentInfluence> .
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<https://concepts.datalad.org/s/prov/unreleased/Derivation> rdfs:subClassOf <https://concepts.datalad.org/s/prov/unreleased/EntityInfluence> .
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<https://concepts.datalad.org/s/thing/unreleased/QuantitativeProperty> rdfs:subClassOf <https://concepts.datalad.org/s/thing/unreleased/Property> .
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<https://example.org/ns/ex/terms/Grant> rdfs:subClassOf <https://concepts.datalad.org/s/prov/unreleased/Entity> .
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<https://example.org/ns/ex/terms/Publication> rdfs:subClassOf <https://concepts.datalad.org/s/prov/unreleased/Entity> .
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<https://example.org/ns/ex/terms/ScientificDataDistribution> rdfs:subClassOf <https://concepts.datalad.org/s/distribution/unreleased/Distribution> .
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<https://concepts.datalad.org/s/distribution/unreleased/Distribution> rdfs:subClassOf <https://concepts.datalad.org/s/prov/unreleased/Entity> .
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<https://concepts.datalad.org/s/distribution/unreleased/Resource> rdfs:subClassOf <https://concepts.datalad.org/s/prov/unreleased/Entity> .
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<https://concepts.datalad.org/s/prov/unreleased/AgentInfluence> rdfs:subClassOf <https://concepts.datalad.org/s/prov/unreleased/Influence> .
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<https://concepts.datalad.org/s/prov/unreleased/EntityInfluence> rdfs:subClassOf <https://concepts.datalad.org/s/prov/unreleased/Influence> .
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<https://concepts.datalad.org/s/thing/unreleased/Property> rdfs:subClassOf <https://concepts.datalad.org/s/thing/unreleased/Characteristic> .
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<https://concepts.datalad.org/s/prov/unreleased/Agent> rdfs:subClassOf <https://concepts.datalad.org/s/thing/unreleased/Thing> .
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<https://concepts.datalad.org/s/prov/unreleased/Entity> rdfs:subClassOf <https://concepts.datalad.org/s/thing/unreleased/Thing> .
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‎src/assets/distribution-penguins.ttl

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@prefix spdx: <http://spdx.org/rdf/terms#> .
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@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
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13-
<https://example.org/ns/datasetversion/.> dldist:has_part <https://example.org/ns/datasetversion/./adelie.csv>,
13+
<https://example.org/ns/datasetversion/.> a "dldist:Distribution"^^xsd:anyURI ;
14+
dldist:has_part <https://example.org/ns/datasetversion/./adelie.csv>,
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<https://example.org/ns/datasetversion/./chinstrap.csv>,
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<https://example.org/ns/datasetversion/./gentoo.csv> ;
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dldist:is_distribution_of <https://example.org/ns/datasetversion/#> ;
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dldist:license licenses:CC0-1.0 ;
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dldist:qualified_part [ a dldist:DistributionPart ;
19-
dlprov:entity <https://example.org/ns/datasetversion/./gentoo.csv> ;
20-
dlthing:name "gentoo.csv" ],
20+
dlprov:entity <https://example.org/ns/datasetversion/./adelie.csv> ;
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dlthing:name "adelie.csv" ],
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[ a dldist:DistributionPart ;
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dlprov:entity <https://example.org/ns/datasetversion/./chinstrap.csv> ;
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dlthing:name "chinstrap.csv" ],
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[ a dldist:DistributionPart ;
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dlprov:entity <https://example.org/ns/datasetversion/./adelie.csv> ;
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dlthing:name "adelie.csv" ] ;
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dlprov:entity <https://example.org/ns/datasetversion/./gentoo.csv> ;
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dlthing:name "gentoo.csv" ] ;
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dlprov:relation <https://example.org/ns/dataset/#RStudio>,
2829
<https://example.org/ns/dataset/#UCSB>,
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<https://example.org/ns/dataset/#ahill>,
@@ -44,44 +45,44 @@
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<https://example.org/ns/dataset/#kgorman>,
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<https://ror.org/01j7nq853>,
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<https://ror.org/021nxhr62>,
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<https://ror.org/05nwjp114> ;
48-
dlthing:meta_type "dldist:Distribution"^^xsd:anyURI .
48+
<https://ror.org/05nwjp114> .
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50-
<https://example.org/ns/dataset/#gormanetal> dldist:date_published "2014-03-05"^^<https://www.w3.org/TR/NOTE-datetime> ;
50+
<https://example.org/ns/dataset/#gormanetal> a "dlsdd:Publication"^^xsd:anyURI ;
51+
dldist:date_published "2014-03-05"^^<https://www.w3.org/TR/NOTE-datetime> ;
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dlprov:qualified_attribution [ a dlprov:Attribution ;
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dlprov:agent <https://example.org/ns/dataset/#kgorman> ;
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dlprov:had_role marcrel:aut ] ;
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dlthing:identifier [ a dlthing:Identifier ;
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dlthing:notation "10.1371/journal.pone.0090081" ;
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dlthing:schema_agency <https://doi.org> ] ;
57-
dlthing:meta_type "dlsdd:Publication"^^xsd:anyURI ;
5858
dlthing:notation "'Gorman KB, Williams TD, Fraser WR (2014) Ecological Sexual Dimorphism and Environmental Variability within a Community of Antarctic Penguins (Genus Pygoscelis). PLoS ONE 9(3): e90081.'" .
5959

60-
<https://example.org/ns/dataset/#nsf0217282> dlsdd:cites_as_authority "https://www.nsf.gov/awardsearch/showAward?AWD_ID=0217282"^^xsd:anyURI ;
60+
<https://example.org/ns/dataset/#nsf0217282> a "dlsdd:Grant"^^xsd:anyURI ;
61+
dlsdd:cites_as_authority "https://www.nsf.gov/awardsearch/showAward?AWD_ID=0217282"^^xsd:anyURI ;
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dlsdd:sponsor <https://ror.org/05nwjp114> ;
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dlthing:identifier [ a dlthing:Identifier ;
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dlthing:notation "0217282" ;
6465
dlthing:schema_agency <https://ror.org/021nxhr62> ] ;
65-
dlthing:meta_type "dlsdd:Grant"^^xsd:anyURI ;
6666
dlthing:name "LTER: PALMER, ANTARCTICA LTER: Climate Change, Ecosystem Migration and Teleconnections in an Ice-Dominated Environment" .
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68-
<https://example.org/ns/dataset/#nsf0741351> dlsdd:cites_as_authority "https://www.nsf.gov/awardsearch/showAward?AWD_ID=0741351"^^xsd:anyURI ;
68+
<https://example.org/ns/dataset/#nsf0741351> a "dlsdd:Grant"^^xsd:anyURI ;
69+
dlsdd:cites_as_authority "https://www.nsf.gov/awardsearch/showAward?AWD_ID=0741351"^^xsd:anyURI ;
6970
dlsdd:sponsor <https://ror.org/05nwjp114> ;
7071
dlthing:identifier [ a dlthing:Identifier ;
7172
dlthing:notation "0741351" ;
7273
dlthing:schema_agency <https://ror.org/021nxhr62> ] ;
73-
dlthing:meta_type "dlsdd:Grant"^^xsd:anyURI ;
7474
dlthing:name "Collaborative Research: Possible Climate-induced Change in the Distribution of Pleuragramma Antarcticum on the Western Antarctic Peninsula Shelf" .
7575

76-
<https://example.org/ns/dataset/#nsf0823101> dlsdd:cites_as_authority "https://www.nsf.gov/awardsearch/showAward?AWD_ID=0823101"^^xsd:anyURI ;
76+
<https://example.org/ns/dataset/#nsf0823101> a "dlsdd:Grant"^^xsd:anyURI ;
77+
dlsdd:cites_as_authority "https://www.nsf.gov/awardsearch/showAward?AWD_ID=0823101"^^xsd:anyURI ;
7778
dlsdd:sponsor <https://ror.org/05nwjp114> ;
7879
dlthing:identifier [ a dlthing:Identifier ;
7980
dlthing:notation "0823101" ;
8081
dlthing:schema_agency <https://ror.org/021nxhr62> ] ;
81-
dlthing:meta_type "dlsdd:Grant"^^xsd:anyURI ;
8282
dlthing:name "Palmer, Antarctica Long Term Ecological Research Project" .
8383

84-
<https://example.org/ns/datasetversion/#> dldist:date_modified "2020-07-16"^^<https://www.w3.org/TR/NOTE-datetime> ;
84+
<https://example.org/ns/datasetversion/#> a "dldist:Resource"^^xsd:anyURI ;
85+
dldist:date_modified "2020-07-16"^^<https://www.w3.org/TR/NOTE-datetime> ;
8586
dldist:is_version_of <https://example.org/ns/dataset/#> ;
8687
dldist:keyword "animal sexual behavior",
8788
"antarctica",
@@ -96,113 +97,112 @@
9697
dlprov:qualified_attribution [ a dlprov:Attribution ;
9798
dlprov:agent <https://ror.org/01j7nq853> ;
9899
dlprov:had_role marcrel:sht ],
99-
[ a dlprov:Attribution ;
100-
dlprov:agent <https://example.org/ns/dataset/#RStudio> ;
101-
dlprov:had_role marcrel:sht ],
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[ a dlprov:Attribution ;
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dlprov:agent <https://example.org/ns/dataset/#UCSB> ;
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dlprov:had_role marcrel:sht ],
105103
[ a dlprov:Attribution ;
106104
dlprov:agent <https://example.org/ns/dataset/#ahorst> ;
107105
dlprov:had_role marcrel:aut,
108106
dpv:DataController ],
107+
[ a dlprov:Attribution ;
108+
dlprov:agent <https://example.org/ns/dataset/#RStudio> ;
109+
dlprov:had_role marcrel:sht ],
109110
[ a dlprov:Attribution ;
110111
dlprov:agent <https://example.org/ns/dataset/#kgorman> ;
111112
dlprov:had_role marcrel:aut,
112113
marcrel:cre ],
113114
[ a dlprov:Attribution ;
114115
dlprov:agent <https://example.org/ns/dataset/#ahill> ;
115116
dlprov:had_role marcrel:aut ] ;
116-
dlprov:qualified_relation [ dlprov:entity <https://example.org/ns/dataset/#nsf0217282>,
117+
dlprov:qualified_relation [ a "dlprov:EntityInfluence"^^xsd:anyURI ;
118+
dlprov:entity <https://example.org/ns/dataset/#gormanetal> ;
119+
dlprov:had_role CiTO:citesAsAuthority,
120+
CiTO:isCitedAsDataSourceBy ],
121+
[ a "dlprov:EntityInfluence"^^xsd:anyURI ;
122+
dlprov:entity <https://example.org/ns/dataset/#nsf0217282>,
117123
<https://example.org/ns/dataset/#nsf0741351>,
118124
<https://example.org/ns/dataset/#nsf0823101> ;
119-
dlprov:had_role schema1:funding ;
120-
dlthing:meta_type "dlprov:EntityInfluence"^^xsd:anyURI ],
121-
[ dlprov:entity <https://example.org/ns/dataset/#gormanetal> ;
122-
dlprov:had_role CiTO:citesAsAuthority,
123-
CiTO:isCitedAsDataSourceBy ;
124-
dlthing:meta_type "dlprov:EntityInfluence"^^xsd:anyURI ] ;
125+
dlprov:had_role schema1:funding ] ;
125126
dlthing:description "The goal of palmerpenguins is to provide a great dataset for data exploration and visualization, as an alternative to iris. Data were collected and made available by Dr. Kristen Gorman and the Palmer Station, Antarctica LTER, a member of the Long Term Ecological Research Network." ;
126127
dlthing:identifier [ a dlthing:Identifier ;
127128
dlthing:notation "10.5281/zenodo.3960218" ;
128129
dlthing:schema_agency <https://doi.org> ] ;
129-
dlthing:meta_type "dldist:Resource"^^xsd:anyURI ;
130130
dlthing:name "penguins" ;
131131
dlthing:same_as "https://doi.org/10.5281/zenodo.3960218"^^xsd:anyURI ;
132132
dlthing:title "Palmer Penguins" .
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134-
<https://example.org/ns/datasetversion/./adelie.csv> dldist:byte_size "23755"^^xsd:nonNegativeInteger ;
134+
<https://example.org/ns/datasetversion/./adelie.csv> a "dldist:Distribution"^^xsd:anyURI ;
135+
dldist:byte_size "23755"^^xsd:nonNegativeInteger ;
135136
dldist:checksum [ a dldist:Checksum ;
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spdx:algorithm "md5"^^xsd:anyURI ;
137138
dldist:digest "e7e2be6b203a221949f05e02fcefd853"^^xsd:hexBinary ] ;
138139
dldist:download_url "https://portal.edirepository.org/nis/dataviewer?packageid=knb-lter-pal.219.3&entityid=002f3893385f710df69eeebe893144ff"^^xsd:anyURI ;
139-
dldist:media_type "text/csv" ;
140-
dlthing:meta_type "dldist:Distribution"^^xsd:anyURI .
140+
dldist:media_type "text/csv" .
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142-
<https://example.org/ns/datasetversion/./chinstrap.csv> dldist:byte_size "18872"^^xsd:nonNegativeInteger ;
142+
<https://example.org/ns/datasetversion/./chinstrap.csv> a "dldist:Distribution"^^xsd:anyURI ;
143+
dldist:byte_size "18872"^^xsd:nonNegativeInteger ;
143144
dldist:checksum [ a dldist:Checksum ;
144145
spdx:algorithm "md5"^^xsd:anyURI ;
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dldist:digest "e4b0710c69297031d63866ce8b888f25"^^xsd:hexBinary ] ;
146147
dldist:download_url "https://portal.edirepository.org/nis/dataviewer?packageid=knb-lter-pal.221.2&entityid=fe853aa8f7a59aa84cdd3197619ef462"^^xsd:anyURI ;
147-
dldist:media_type "text/csv" ;
148-
dlthing:meta_type "dldist:Distribution"^^xsd:anyURI .
148+
dldist:media_type "text/csv" .
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150-
<https://example.org/ns/datasetversion/./gentoo.csv> dldist:byte_size "11263"^^xsd:nonNegativeInteger ;
150+
<https://example.org/ns/datasetversion/./gentoo.csv> a "dldist:Distribution"^^xsd:anyURI ;
151+
dldist:byte_size "11263"^^xsd:nonNegativeInteger ;
151152
dldist:checksum [ a dldist:Checksum ;
152153
spdx:algorithm "md5"^^xsd:anyURI ;
153154
dldist:digest "1549566fb97afa879dc9446edcf2015f"^^xsd:hexBinary ] ;
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dldist:download_url "https://portal.edirepository.org/nis/dataviewer?packageid=knb-lter-pal.220.3&entityid=e03b43c924f226486f2f0ab6709d2381"^^xsd:anyURI ;
155-
dldist:media_type "text/csv" ;
156-
dlthing:meta_type "dldist:Distribution"^^xsd:anyURI .
156+
dldist:media_type "text/csv" .
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158-
<https://example.org/ns/dataset/#RStudio> dlthing:meta_type "dldist:Organization"^^xsd:anyURI ;
158+
<https://example.org/ns/dataset/#RStudio> a "dldist:Organization"^^xsd:anyURI ;
159159
dlthing:name "RStudio: Boston, MA, US" .
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161-
<https://example.org/ns/dataset/#ahill> dldist:affiliation <https://example.org/ns/dataset/#Rstudio> ;
161+
<https://example.org/ns/dataset/#ahill> a "dldist:Person"^^xsd:anyURI ;
162+
dldist:affiliation <https://example.org/ns/dataset/#Rstudio> ;
162163
dldist:email "[email protected]"^^dldist:EmailAddress ;
163164
dlthing:identifier [ a dlthing:Identifier ;
164165
dlthing:notation "0000-0002-8082-1890" ;
165166
dlthing:schema_agency <https://orcid.org> ] ;
166-
dlthing:meta_type "dldist:Person"^^xsd:anyURI ;
167167
dlthing:name "Allison Hill" .
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169-
<https://example.org/ns/dataset/#ahorst> dldist:affiliation <https://example.org/ns/dataset/#UCSB> ;
169+
<https://example.org/ns/dataset/#ahorst> a "dldist:Person"^^xsd:anyURI ;
170+
dldist:affiliation <https://example.org/ns/dataset/#UCSB> ;
170171
dldist:email "[email protected]"^^dldist:EmailAddress ;
171172
dlthing:identifier [ a dlthing:Identifier ;
172173
dlthing:notation "0000-0002-6047-5564" ;
173174
dlthing:schema_agency <https://orcid.org> ] ;
174-
dlthing:meta_type "dldist:Person"^^xsd:anyURI ;
175175
dlthing:name "Allison Horst" ;
176176
dlthing:same_as "https://orcid.org/0000-0002-6047-5564"^^xsd:anyURI .
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178-
<https://example.org/ns/dataset/#UCSB> dlthing:meta_type "dldist:Organization"^^xsd:anyURI ;
178+
<https://example.org/ns/dataset/#UCSB> a "dldist:Organization"^^xsd:anyURI ;
179179
dlthing:name "UC Santa Barbara: Santa Barbara, CA, US" .
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181-
<https://example.org/ns/dataset/#kgorman> dldist:affiliation <https://ror.org/01j7nq853> ;
181+
<https://example.org/ns/dataset/#kgorman> a "dldist:Person"^^xsd:anyURI ;
182+
dldist:affiliation <https://ror.org/01j7nq853> ;
182183
dldist:email "[email protected]"^^dldist:EmailAddress ;
183184
dlthing:identifier [ a dlthing:Identifier ;
184185
dlthing:notation "0000-0002-0258-9264" ;
185186
dlthing:schema_agency <https://orcid.org> ] ;
186-
dlthing:meta_type "dldist:Person"^^xsd:anyURI ;
187187
dlthing:name "Kirsten Gorman" .
188188

189-
<https://ror.org/01j7nq853> dlthing:identifier [ a dlthing:Identifier ;
189+
<https://ror.org/01j7nq853> a "dldist:Organization"^^xsd:anyURI ;
190+
dlthing:identifier [ a dlthing:Identifier ;
190191
dlthing:notation "01j7nq853" ;
191192
dlthing:schema_agency <https://ror.org> ] ;
192-
dlthing:meta_type "dldist:Organization"^^xsd:anyURI ;
193193
dlthing:name "University of Alaska Fairbanks: Fairbanks, AK, US" .
194194

195-
<https://ror.org/021nxhr62> dlthing:identifier [ a dlthing:Identifier ;
195+
<https://ror.org/021nxhr62> a "dlthing:Thing"^^xsd:anyURI ;
196+
dlthing:identifier [ a dlthing:Identifier ;
196197
dlthing:notation "021nxhr62" ;
197198
dlthing:schema_agency <https://ror.org> ] ;
198-
dlthing:meta_type "dlthing:Thing"^^xsd:anyURI ;
199199
dlthing:name "US National Science Foundation" ;
200200
dlthing:same_as "https://www.nsf.org"^^xsd:anyURI .
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202-
<https://ror.org/05nwjp114> dlthing:identifier [ a dlthing:Identifier ;
202+
<https://ror.org/05nwjp114> a "dlthing:Thing"^^xsd:anyURI ;
203+
dlthing:identifier [ a dlthing:Identifier ;
203204
dlthing:notation "05nwjp114" ;
204205
dlthing:schema_agency <https://ror.org> ] ;
205-
dlthing:meta_type "dlthing:Thing"^^xsd:anyURI ;
206206
dlthing:name "NSF Office of Polar Programs" .
207207

208208

‎src/components/BooleanSelectEditor.vue

Lines changed: 14 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,7 @@
11
<template>
22
<v-switch
33
label="No/Yes"
4-
v-model="formData[props.node_uid][props.triple_uid]"
4+
v-model="triple_object"
55
inset
66
validate-on="lazy input"
77
:rules="rules"
@@ -10,16 +10,27 @@
1010
</template>
1111

1212
<script setup>
13-
import { inject } from 'vue'
13+
import { inject, computed } from 'vue'
1414
import { useRules } from '../composables/rules'
1515
1616
const props = defineProps({
1717
property_shape: Object,
1818
node_uid: String,
19-
triple_uid: String,
19+
triple_uid: String
2020
})
2121
const formData = inject('formData');
2222
const { rules } = useRules(props.property_shape)
23+
24+
const triple_object = computed({
25+
get() {
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return formData[props.node_uid].at(-1)[props.triple_uid].at(-1);
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},
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set(value) {
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const node_idx = formData[props.node_uid].length - 1
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const triple_idx = formData[props.node_uid][node_idx][props.triple_uid].length - 1
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formData[props.node_uid][node_idx][props.triple_uid][triple_idx] = value;
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}
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});
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</script>
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<script>

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