passing missing arguments when opening zarr, hdf5 and netcdft4 datatrees (#9428)

* passing missing arguments to  when opening hdf5 datatrees

* passing missing arguments to  when opening netcdf4 datatrees

* [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

* changes documented in 'whats-new.rst file'

* passing missing arguments to open_groups_as_dict  when opening zarr datatrees

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Tom Nicholas <[email protected]>

Author: 3 people

doc/whats-new.rst

@@ -155,6 +155,9 @@ Bug fixes
 - Fix deprecation warning that was raised when calling ``np.array`` on an ``xr.DataArray``
   in NumPy 2.0 (:issue:`9312`, :pull:`9393`)
   By `Andrew Scherer <https://github.com/andrew-s28>`_.
+- Fix passing missing arguments to when opening hdf5 and netCDF4 datatrees
+  (:issue:`9427`, :pull: `9428`).
+  By `Alfonso Ladino <https://github.com/aladinor>`_.
 - Fix support for using ``pandas.DateOffset``, ``pandas.Timedelta``, and
   ``datetime.timedelta`` objects as ``resample`` frequencies
   (:issue:`9408`, :pull:`9413`).

xarray/backends/h5netcdf_.py

@@ -477,7 +477,25 @@ def open_datatree(
 
         from xarray.core.datatree import DataTree
 
-        groups_dict = self.open_groups_as_dict(filename_or_obj, **kwargs)
+        groups_dict = self.open_groups_as_dict(
+            filename_or_obj,
+            mask_and_scale=mask_and_scale,
+            decode_times=decode_times,
+            concat_characters=concat_characters,
+            decode_coords=decode_coords,
+            drop_variables=drop_variables,
+            use_cftime=use_cftime,
+            decode_timedelta=decode_timedelta,
+            format=format,
+            group=group,
+            lock=lock,
+            invalid_netcdf=invalid_netcdf,
+            phony_dims=phony_dims,
+            decode_vlen_strings=decode_vlen_strings,
+            driver=driver,
+            driver_kwds=driver_kwds,
+            **kwargs,
+        )
 
         return DataTree.from_dict(groups_dict)
 

xarray/backends/netCDF4_.py

@@ -713,7 +713,24 @@ def open_datatree(
 
         from xarray.core.datatree import DataTree
 
-        groups_dict = self.open_groups_as_dict(filename_or_obj, **kwargs)
+        groups_dict = self.open_groups_as_dict(
+            filename_or_obj,
+            mask_and_scale=mask_and_scale,
+            decode_times=decode_times,
+            concat_characters=concat_characters,
+            decode_coords=decode_coords,
+            drop_variables=drop_variables,
+            use_cftime=use_cftime,
+            decode_timedelta=decode_timedelta,
+            group=group,
+            format=format,
+            clobber=clobber,
+            diskless=diskless,
+            persist=persist,
+            lock=lock,
+            autoclose=autoclose,
+            **kwargs,
+        )
 
         return DataTree.from_dict(groups_dict)
 

xarray/backends/zarr.py

@@ -1295,7 +1295,25 @@ def open_datatree(
         from xarray.core.datatree import DataTree
 
         filename_or_obj = _normalize_path(filename_or_obj)
-        groups_dict = self.open_groups_as_dict(filename_or_obj, **kwargs)
+        groups_dict = self.open_groups_as_dict(
+            filename_or_obj=filename_or_obj,
+            mask_and_scale=mask_and_scale,
+            decode_times=decode_times,
+            concat_characters=concat_characters,
+            decode_coords=decode_coords,
+            drop_variables=drop_variables,
+            use_cftime=use_cftime,
+            decode_timedelta=decode_timedelta,
+            group=group,
+            mode=mode,
+            synchronizer=synchronizer,
+            consolidated=consolidated,
+            chunk_store=chunk_store,
+            storage_options=storage_options,
+            stacklevel=stacklevel,
+            zarr_version=zarr_version,
+            **kwargs,
+        )
 
         return DataTree.from_dict(groups_dict)