@@ -20,11 +20,11 @@ jobs:
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tail --lines=+5 base/environment.yml >> md/environment.yml
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docker build -t pyiron/md:latest md/
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docker tag pyiron/md:latest pyiron/md:"$(date +%F)"
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- - name : Build pyiron/continuum
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- timeout-minutes : 5
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- run : |
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- docker build -t pyiron/continuum:latest continuum/
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- docker tag pyiron/continuum:latest pyiron/continuum:"$(date +%F)"
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+ # - name: Build pyiron/continuum
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+ # timeout-minutes: 5
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+ # run: |
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+ # docker build -t pyiron/continuum:latest continuum/
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+ # docker tag pyiron/continuum:latest pyiron/continuum:"$(date +%F)"
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- name : Build pyiron/pyiron
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timeout-minutes : 5
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run : |
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docker tag pyiron/mpie_cmti:latest pyiron/mpie_cmti:"$(date +%F)"
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# Testing
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- run : docker images
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- - name : Test pyiron/continuum
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- timeout-minutes : 5
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- run : docker run --rm pyiron/continuum /bin/bash -c 'source /opt/conda/bin/activate; i=0; for f in $(ls "${HOME}"/notebooks_*/*.ipynb); do jupyter nbconvert --ExecutePreprocessor.timeout=9999999 --ExecutePreprocessor.kernel_name=python3 --to notebook --execute $f || i=$((i+1)); done; if [ $i -gt 0 ]; then exit 1; fi;'
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+ # - name: Test pyiron/continuum
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+ # timeout-minutes: 5
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+ # run: docker run --rm pyiron/continuum /bin/bash -c 'source /opt/conda/bin/activate; i=0; for f in $(ls "${HOME}"/notebooks_*/*.ipynb); do jupyter nbconvert --ExecutePreprocessor.timeout=9999999 --ExecutePreprocessor.kernel_name=python3 --to notebook --execute $f || i=$((i+1)); done; if [ $i -gt 0 ]; then exit 1; fi;'
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- name : Test pyiron/base
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timeout-minutes : 5
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run : docker run --rm pyiron/base /bin/bash -c 'source /opt/conda/bin/activate; i=0; for f in $(ls "${HOME}"/notebooks_*/*.ipynb); do jupyter nbconvert --ExecutePreprocessor.timeout=9999999 --ExecutePreprocessor.kernel_name=python3 --to notebook --execute $f || i=$((i+1)); done; if [ $i -gt 0 ]; then exit 1; fi;'
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- run : mkdir -p environment; chmod 777 environment
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- run : docker run -v $(pwd)/environment:/home/jovyan/ --rm pyiron/base /bin/bash -c 'source /opt/conda/bin/activate; conda env export > /home/jovyan/pyiron_base_$(date +%F).yml;'
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- run : docker run -v $(pwd)/environment:/home/jovyan/ --rm pyiron/md /bin/bash -c 'source /opt/conda/bin/activate; conda env export > /home/jovyan/pyiron_md_$(date +%F).yml;'
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- - run : docker run -v $(pwd)/environment:/home/jovyan/ --rm pyiron/continuum /bin/bash -c 'source /opt/conda/bin/activate; conda env export > /home/jovyan/pyiron_continuum_$(date +%F).yml;'
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+ # - run: docker run -v $(pwd)/environment:/home/jovyan/ --rm pyiron/continuum /bin/bash -c 'source /opt/conda/bin/activate; conda env export > /home/jovyan/pyiron_continuum_$(date +%F).yml;'
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- run : docker run -v $(pwd)/environment:/home/jovyan/ --rm pyiron/pyiron /bin/bash -c 'source /opt/conda/bin/activate; conda env export > /home/jovyan/pyiron_pyiron_$(date +%F).yml;'
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- run : docker run -v $(pwd)/environment:/home/jovyan/ --rm pyiron/potentialworkshop /bin/bash -c 'source /opt/conda/bin/activate; conda env export > /home/jovyan/pyiron_potentialworkshop_$(date +%F).yml;'
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- run : docker run -v $(pwd)/environment:/home/jovyan/ --rm pyiron/experimental /bin/bash -c 'source /opt/conda/bin/activate; conda env export > /home/jovyan/pyiron_experimental_$(date +%F).yml;'
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