dot_pylada

vasp_has_nlep = True

################## QDEL definition ################
qdel_exe = "qdel"

################### QSTAT definition ##############
def ipython_qstat(self, arg):

  """ Prints jobs of current user. """
  from subprocess import Popen, PIPE
  from IPython.utils.text import SList
  # get user jobs ids
  jobs   = SList(Popen(['qstat', '-f', '-u', 'vstevano'], stdout=PIPE)   \
                .communicate()[0].split('\n'))
  
  names  = [ u[u.find('=')+1:].lstrip().rstrip()                               \
             for u in jobs.grep('Job_Name') ]

  mpps   = [u[u.find(':')+1:] for u in jobs.grep('Job Id')]

  states = [ u[u.find('=')+1:].lstrip().rstrip()                               \
             for u in jobs.grep('job_state') ]
  ids    = [u[u.find(':')+1:].lstrip().rstrip() for u in jobs.grep('Job Id')]
  return SList([ "{0:>10} {1:>4} {2:>3} -- {3}".format(id, mpp, state, name)   \
                 for id, mpp, state, name in zip(ids, mpps, states, names)])


##################### PBSSCRIPT #####################

pbs_string =  '''
#!/bin/bash
#PBS -A {account}
#PBS -q {queue}
#PBS -m n
#PBS -l walltime={walltime}
#PBS -l nodes={nnodes}
#PBS -e {err}
#PBS -o {out}
#PBS -N {name}
#PBS -d {directory}
#PBS -l feature=!phi

cd {directory}

source /projects/NRELMatDB/pylada-light/pylada-light/peregrine-env.sh

{header}
python {scriptcommand}
{footer}

'''