macosx.sh

#!/bin/bash
# This script contains common code for building PyNE on various Debian-derived systems
#

function check_repo() {

    repo_name=$1

    if [ -d ${repo_name} ] ; then
        read -p "Delete the existing ${repo_name} directory and all contents? (y/n) " -n 1 -r
        if [[ $REPLY =~ ^[Yy]$ ]] ; then
            rm -rf ${repo_name}
        fi
    fi

}

function build_moab {

    # Install MOAB
    cd ${install_dir}
    mkdir -p moab
    cd moab
    check_repo moab-repo
    git clone --branch Version5.1.0 --single-branch https://bitbucket.org/fathomteam/moab moab-repo
    cd moab-repo
    mkdir -p build
    cd build
    cmake ../ -DENABLE_HDF5=ON \
              -DBUILD_SHARED_LIBS=ON \
              -DENABLE_PYMOAB=ON \
              -DENABLE_BLASLAPACK=OFF \
              -DENABLE_FORTRAN=OFF \
              -DCMAKE_INSTALL_PREFIX=${install_dir}/moab
    make
    make install
    
    echo "if [ -n \"\${LD_LIBRARY_PATH-}\" ]" >> ~/.bashrc
    echo "then" >> ~/.bashrc 
    echo "  export LD_LIBRARY_PATH=${install_dir}/moab/lib:\$LD_LIBRARY_PATH" >> ~/.bashrc
    echo "else" >> ~/.bashrc
    echo "  export LD_LIBRARY_PATH=${install_dir}/moab/lib" >> ~/.bashrc
    echo "fi" >> ~/.bashrc

    PYTHON_VERSION=$(python -c 'import sys; print(sys.version.split('')[0][0:3])')
    echo "if [ -n \"\${PYTHONPATH-}\" ]" >> ~/.bashrc
    echo "then" >> ~/.bashrc
    echo "  export PYTHONPATH=${install_dir}/moab/lib/python${PYTHON_VERSION}/site-packages:\$PYTHONPATH" >> ~/.bashrc
    echo "else" >> ~/.bashrc
    echo "  export PYTHONPATH=${install_dir}/moab/lib/python${PYTHON_VERSION}/site-packages" >> ~/.bashrc
    echo "fi" >> ~/.bashrc
    source ~/.bashrc
}

function build_dagmc {

    # Install DAGMC
    cd ${install_dir}
    check_repo dagmc
    mkdir -p dagmc
    cd dagmc
    git clone https://github.com/svalinn/DAGMC.git dagmc-repo
    cd dagmc-repo
    git checkout develop
    mkdir build
    cd build
    cmake .. -DMOAB_DIR=${install_dir}/moab \
             -DBUILD_STATIC_LIBS=OFF \
             -DCMAKE_INSTALL_PREFIX=${install_dir}/dagmc
    make
    make install
}

function install_pyne {

    # Install PyNE
    cd ${install_dir}
    check_repo pyne
    git clone https://github.com/pyne/pyne.git
    cd pyne
    if [ $1 == 'stable' ] ; then
        TAG=$(git describe --abbrev=0 --tags)
        git checkout tags/`echo ${TAG}` -b `echo ${TAG}`
    fi
    

	python setup.py install --user -- -DMOAB_LIBRARY=${install_dir}/moab/lib \
                                      -DMOAB_INCLUDE_DIR=${install_dir}/moab/include \
                                   --dagmc ${install_dir}/dagmc \
                                   --clean    
    
    echo "export PATH=${HOME}/.local/bin:\$PATH" >> ~/.bashrc
    echo "export LD_LIBRARY_PATH=${HOME}/.local/lib:\$LD_LIBRARY_PATH" >> ~/.bashrc
    
   PYTHON_VERSION=$(python -c 'import sys; print(sys.version.split('')[0][0:3])')
    echo "if [ -n \"\${PYTHONPATH-}\" ]" >> ~/.bashrc
    echo "then" >> ~/.bashrc
    echo "  export PYTHONPATH=~/.local/lib/python${PYTHON_VERSION}/site-packages:\$PYTHONPATH" >> ~/.bashrc
    echo "else" >> ~/.bashrc
    echo "  export PYTHONPATH=~/.local/lib/python${PYTHON_VERSION}/site-packages" >> ~/.bashrc
    echo "fi" >> ~/.bashrc
    source ~/.bashrc
}

function run_nuc_data_make {

    cd
    # Generate nuclear data file
    nuc_data_make

}

function test_pyne {
    
    cd $install_dir/pyne
    cd tests

    ./travis-run-tests.sh python3
}

set -euo pipefail
IFS=$'\n\t'

# system update
eval brew update
eval brew install ${brew_package_list}
export PATH="${HOME}/.local/bin:${PATH}"
eval sudo pip3 install ${pip_package_list}

install_dir=${HOME}/opt
mkdir -p ${install_dir}

build_moab

build_dagmc

install_pyne $1

run_nuc_data_make

test_pyne

echo "Run 'source ~/.bashrc' to update environment variables. PyNE may not function correctly without doing so."
echo "PyNE build complete."