chore(release): update changelog and citation.cff

Author: amyheather

CHANGELOG.md

@@ -5,6 +5,44 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). Dates formatted as YYYY-MM-DD as per [ISO standard](https://www.iso.org/iso-8601-date-and-time-format.html).
 
+## v1.0.0 - 2025-01-27
+
+Lots and lots of changes! Many of these are a result of comments from peer review of code by Tom Monks.
+
+### Added
+
+* Virtual environment alternative to conda.
+* Bash script to lint repository.
+* Lots of new unit tests and functional tests!
+* GitHub actions to run tests and lint repository.
+* Add `MonitoredResource` and alternative warm-up results collection.
+* Time-weighted statistics - including relevant code (`replications.py`), documentation (`choosing_replications.ipynb`), and tests (`_replications` in tests).
+* User-controlled interactive histogram of results in `analysis.ipynb`.
+* Add metrics for unseen patients.
+
+### Changed
+
+* Changes to code and environment to accomodate new features (described in 'Added').
+* Import simulation as a local package.
+* Save all tables and figures.
+* Add Tom Monks to author list.
+* Expanded README.
+* Renaming classes and variables (e.g. `Trial` to `Runner`, `Defaults` to `Param`).
+* Improved log formatting.
+* Moved methods (e.g. from `analysis.ipynb` to `simulation/`).
+* Re-arranged tests into unit tests, back tests and functional tests.
+
+### Fixed
+
+* First arrival no longer at time 0.
+* Begin interval audit at start of data collection period (rather than start of warm-up period).
+* Correct logging message where wrong time was used.
+* Add error handling for invalid cores (in model + test) and error message for attempts to log when in parallel.
+* Resolved runtime warning with handling for variance 0 in `summary_stats()`.
+* Prevent output of standard deviation or confidence intervals from `summary_stats()` when n<3.
+* Add error handling for results processing when there are no arrivals.
+* Add error handling for invalid mean in `Exponential`.
+
 ## v0.1.0 - 2025-01-09
 
 🌱 First release of the python DES template.

CITATION.cff

@@ -26,5 +26,5 @@ abstract: >-
   within a reproducible analytical pipeline (RAP).
 license: MIT
 # TODO: Manually update with each GitHub release
-version: '0.1.0'
-date-released: '2025-01-09'
+version: '1.0.0'
+date-released: '2025-02-27'