Built site for gh-pages

Author: Quarto GHA Workflow Runner

.nojekyll

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evaluation/badges.html

@@ -246,7 +246,7 @@ <h1 class="title">Badges</h1>
 <p><em>Caveat: Please note that these criteria are based on available information about each badge online, and that we have allowed troubleshooting for execution and reproduction. We cannot guarantee that the badges below would have been awarded in practice by these journals.</em></p>
 <section id="criteria" class="level2">
 <h2 class="anchored" data-anchor-id="criteria">Criteria</h2>
-<div id="64dc55e5" class="cell" data-execution_count="1">
+<div id="6fa3f8fc" class="cell" data-execution_count="1">
 <details class="code-fold">
 <summary>Code</summary>
 <div class="sourceCode cell-code" id="cb1"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="im">from</span> IPython.display <span class="im">import</span> display, Markdown</span>
@@ -378,7 +378,7 @@ <h2 class="anchored" data-anchor-id="criteria">Criteria</h2>
 </section>
 <section id="badges" class="level2">
 <h2 class="anchored" data-anchor-id="badges">Badges</h2>
-<div id="bf97ef5b" class="cell" data-execution_count="2">
+<div id="a2af8233" class="cell" data-execution_count="2">
 <details class="code-fold">
 <summary>Code</summary>
 <div class="sourceCode cell-code" id="cb2"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="co"># Full badge names</span></span>

evaluation/logbook.html

@@ -248,7 +248,7 @@ <h5 class="quarto-listing-category-title">Categories</h5><div class="quarto-list
 
 <div class="quarto-listing quarto-listing-container-default" id="listing-listing">
 <div class="list quarto-listing-default">
-<div class="quarto-post image-right" data-index="0" data-categories="guidelines" data-listing-date-sort="1717545600000" data-listing-file-modified-sort="1717666325222" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="7" data-listing-word-count-sort="1345">
+<div class="quarto-post image-right" data-index="0" data-categories="guidelines" data-listing-date-sort="1717545600000" data-listing-file-modified-sort="1717668622397" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="7" data-listing-word-count-sort="1345">
 <div class="thumbnail">
 <p><a href="../evaluation/posts/2024_06_05/index.html" class="no-external"></a></p><a href="../evaluation/posts/2024_06_05/index.html" class="no-external">
 <div class="listing-item-img-placeholder card-img-top" >&nbsp;</div>
@@ -281,7 +281,7 @@ <h3 class="no-anchor listing-title">
 </a>
 </div>
 </div>
-<div class="quarto-post image-right" data-index="1" data-categories="guidelines" data-listing-date-sort="1717459200000" data-listing-file-modified-sort="1717666325222" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="4" data-listing-word-count-sort="635">
+<div class="quarto-post image-right" data-index="1" data-categories="guidelines" data-listing-date-sort="1717459200000" data-listing-file-modified-sort="1717668622397" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="4" data-listing-word-count-sort="635">
 <div class="thumbnail">
 <p><a href="../evaluation/posts/2024_06_04/index.html" class="no-external"></a></p><a href="../evaluation/posts/2024_06_04/index.html" class="no-external">
 <div class="listing-item-img-placeholder card-img-top" >&nbsp;</div>
@@ -314,7 +314,7 @@ <h3 class="no-anchor listing-title">
 </a>
 </div>
 </div>
-<div class="quarto-post image-right" data-index="2" data-categories="reproduce" data-listing-date-sort="1717372800000" data-listing-file-modified-sort="1717666325218" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="5" data-listing-word-count-sort="879">
+<div class="quarto-post image-right" data-index="2" data-categories="reproduce" data-listing-date-sort="1717372800000" data-listing-file-modified-sort="1717668622393" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="5" data-listing-word-count-sort="879">
 <div class="thumbnail">
 <p><a href="../evaluation/posts/2024_06_03/index.html" class="no-external"></a></p><a href="../evaluation/posts/2024_06_03/index.html" class="no-external">
 <p class="card-img-top"><img src="../original_study/article_fig2.png"  class="thumbnail-image card-img"/></p>
@@ -347,7 +347,7 @@ <h3 class="no-anchor listing-title">
 </a>
 </div>
 </div>
-<div class="quarto-post image-right" data-index="3" data-categories="reproduce" data-listing-date-sort="1716508800000" data-listing-file-modified-sort="1717666325218" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="458">
+<div class="quarto-post image-right" data-index="3" data-categories="reproduce" data-listing-date-sort="1716508800000" data-listing-file-modified-sort="1717668622393" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="3" data-listing-word-count-sort="458">
 <div class="thumbnail">
 <p><a href="../evaluation/posts/2024_05_24/index.html" class="no-external"></a></p><a href="../evaluation/posts/2024_05_24/index.html" class="no-external">
 <p class="card-img-top"><img src="posts/2024_05_24/figure_1a.png"  class="thumbnail-image card-img"/></p>
@@ -380,7 +380,7 @@ <h3 class="no-anchor listing-title">
 </a>
 </div>
 </div>
-<div class="quarto-post image-right" data-index="4" data-categories="read,reproduce" data-listing-date-sort="1716422400000" data-listing-file-modified-sort="1717666325214" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="13" data-listing-word-count-sort="2543">
+<div class="quarto-post image-right" data-index="4" data-categories="read,reproduce" data-listing-date-sort="1716422400000" data-listing-file-modified-sort="1717668622389" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="13" data-listing-word-count-sort="2543">
 <div class="thumbnail">
 <p><a href="../evaluation/posts/2024_05_23/index.html" class="no-external"></a></p><a href="../evaluation/posts/2024_05_23/index.html" class="no-external">
 <p class="card-img-top"><img src="../original_study/article_fig4.png"  class="thumbnail-image card-img"/></p>
@@ -416,7 +416,7 @@ <h3 class="no-anchor listing-title">
 </a>
 </div>
 </div>
-<div class="quarto-post image-right" data-index="5" data-categories="setup,read,scope" data-listing-date-sort="1716336000000" data-listing-file-modified-sort="1717666325210" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="9" data-listing-word-count-sort="1786">
+<div class="quarto-post image-right" data-index="5" data-categories="setup,read,scope" data-listing-date-sort="1716336000000" data-listing-file-modified-sort="1717668622385" data-listing-date-modified-sort="NaN" data-listing-reading-time-sort="9" data-listing-word-count-sort="1786">
 <div class="thumbnail">
 <p><a href="../evaluation/posts/2024_05_22/index.html" class="no-external"></a></p><a href="../evaluation/posts/2024_05_22/index.html" class="no-external">
 <p class="card-img-top"><img src="../original_study/article_fig1.png"  class="thumbnail-image card-img"/></p>

evaluation/posts/2024_05_22/index.html

@@ -475,7 +475,7 @@ <h3 class="anchored" data-anchor-id="untimed-uploading-to-zenodo">Untimed: Uploa
 </section>
 <section id="timings" class="level2">
 <h2 class="anchored" data-anchor-id="timings">Timings</h2>
-<div id="dd58ebe8" class="cell" data-execution_count="1">
+<div id="5f23259d" class="cell" data-execution_count="1">
 <div class="sourceCode cell-code" id="cb1"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="im">import</span> sys</span>
 <span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a>sys.path.append(<span class="st">'../'</span>)</span>
 <span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a><span class="im">from</span> timings <span class="im">import</span> calculate_times</span>

evaluation/posts/2024_05_23/index.html

@@ -547,7 +547,7 @@ <h3 class="anchored" data-anchor-id="reproduction-2">15.23-16.35 Reproduction</h
 </section>
 <section id="timings" class="level2">
 <h2 class="anchored" data-anchor-id="timings">Timings</h2>
-<div id="111a2dc4" class="cell" data-execution_count="1">
+<div id="43ceb09c" class="cell" data-execution_count="1">
 <div class="sourceCode cell-code" id="cb5"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb5-1"><a href="#cb5-1" aria-hidden="true" tabindex="-1"></a><span class="im">import</span> sys</span>
 <span id="cb5-2"><a href="#cb5-2" aria-hidden="true" tabindex="-1"></a>sys.path.append(<span class="st">'../'</span>)</span>
 <span id="cb5-3"><a href="#cb5-3" aria-hidden="true" tabindex="-1"></a><span class="im">from</span> timings <span class="im">import</span> calculate_times</span>

evaluation/posts/2024_05_24/index.html

@@ -290,7 +290,7 @@ <h3 class="anchored" data-anchor-id="untimed-exploring-methods-for-overlaying-fi
 <p>Exploring methods for overlaying figures. Not timed as not about reproduction of this study, but about how we are going to do this each time when reproducing.</p>
 <p>Decided that it’s not helpful to do this - spend more time fiddling around with getting them to resize and overlay correctly - and that the simplest option here would be to compare by eye.</p>
 <p>If timed, 13.33-13.57.</p>
-<div id="eb404ea3" class="cell" data-execution_count="1">
+<div id="0ec7ad63" class="cell" data-execution_count="1">
 <div class="sourceCode cell-code" id="cb1"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="im">import</span> cv2</span>
 <span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a><span class="im">import</span> matplotlib.pyplot <span class="im">as</span> plt</span>
 <span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a></span>
@@ -312,7 +312,7 @@ <h3 class="anchored" data-anchor-id="untimed-exploring-methods-for-overlaying-fi
 </div>
 </div>
 </div>
-<div id="a9c3a50d" class="cell" data-execution_count="2">
+<div id="5bb31d96" class="cell" data-execution_count="2">
 <div class="sourceCode cell-code" id="cb2"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb2-1"><a href="#cb2-1" aria-hidden="true" tabindex="-1"></a><span class="co"># Overlay transparently</span></span>
 <span id="cb2-2"><a href="#cb2-2" aria-hidden="true" tabindex="-1"></a>combined <span class="op">=</span> cv2.addWeighted(original,<span class="fl">0.4</span>,overlay_resize,<span class="fl">0.1</span>,<span class="dv">0</span>)</span>
 <span id="cb2-3"><a href="#cb2-3" aria-hidden="true" tabindex="-1"></a></span>
@@ -332,7 +332,7 @@ <h3 class="anchored" data-anchor-id="untimed-exploring-methods-for-overlaying-fi
 </section>
 <section id="timings" class="level2">
 <h2 class="anchored" data-anchor-id="timings">Timings</h2>
-<div id="d1c6a73e" class="cell" data-execution_count="3">
+<div id="191145ef" class="cell" data-execution_count="3">
 <div class="sourceCode cell-code" id="cb3"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb3-1"><a href="#cb3-1" aria-hidden="true" tabindex="-1"></a><span class="im">import</span> sys</span>
 <span id="cb3-2"><a href="#cb3-2" aria-hidden="true" tabindex="-1"></a>sys.path.append(<span class="st">'../'</span>)</span>
 <span id="cb3-3"><a href="#cb3-3" aria-hidden="true" tabindex="-1"></a><span class="im">from</span> timings <span class="im">import</span> calculate_times</span>

evaluation/posts/2024_06_03/index.html

@@ -386,7 +386,7 @@ <h3 class="anchored" data-anchor-id="tidying-the-notebook-and-creating-reproduct
 </section>
 <section id="timings" class="level2">
 <h2 class="anchored" data-anchor-id="timings">Timings</h2>
-<div id="701b3b2b" class="cell" data-execution_count="1">
+<div id="5a19ef86" class="cell" data-execution_count="1">
 <div class="sourceCode cell-code" id="cb1"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="im">import</span> sys</span>
 <span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a>sys.path.append(<span class="st">'../'</span>)</span>
 <span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a><span class="im">from</span> timings <span class="im">import</span> calculate_times</span>

evaluation/posts/2024_06_05/index.html

@@ -384,7 +384,7 @@ <h3 class="anchored" data-anchor-id="comparison-of-my-stress-des-against-the-ori
 <h3 class="anchored" data-anchor-id="comparing-best-practice-audit-results-with-monks-and-harper">Comparing best practice audit results with Monks and Harper</h3>
 <p>Compared my decisions for the best practice audit against those made in Monks and Harper.</p>
 <p>Their GitHub is <a href="https://github.com/TomMonks/des_sharing_lit_review">TomMonks/des_sharing_lit_review</a>, which provides the file <code>bp_audit.zip</code>. I used the provided code to clean this and saved it as <code>bp_audit_clean.csv</code>, which can then view here:</p>
-<div id="2d3c24e0" class="cell" data-execution_count="1">
+<div id="84e17fa1" class="cell" data-execution_count="1">
 <div class="sourceCode cell-code" id="cb1"><pre class="sourceCode python code-with-copy"><code class="sourceCode python"><span id="cb1-1"><a href="#cb1-1" aria-hidden="true" tabindex="-1"></a><span class="im">import</span> pandas <span class="im">as</span> pd</span>
 <span id="cb1-2"><a href="#cb1-2" aria-hidden="true" tabindex="-1"></a></span>
 <span id="cb1-3"><a href="#cb1-3" aria-hidden="true" tabindex="-1"></a><span class="co"># Import review results</span></span>

evaluation/reporting.html

@@ -1181,7 +1181,7 @@ <h2 class="anchored" data-anchor-id="des-checklist-derived-from-ispor-sdm">DES c
     </div>
   </div>
 </footer>
-<script>var lightboxQuarto = GLightbox({"selector":".lightbox","loop":false,"descPosition":"bottom","openEffect":"zoom","closeEffect":"zoom"});
+<script>var lightboxQuarto = GLightbox({"openEffect":"zoom","descPosition":"bottom","selector":".lightbox","loop":false,"closeEffect":"zoom"});
 window.onload = () => {
   lightboxQuarto.on('slide_before_load', (data) => {
     const { slideIndex, slideNode, slideConfig, player, trigger } = data;

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@@ -2,86 +2,86 @@
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 </urlset>