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sample ids not displayed in summarized feature table #303

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gregcaporaso opened this issue Feb 22, 2024 · 3 comments · Fixed by #302
Closed

sample ids not displayed in summarized feature table #303

gregcaporaso opened this issue Feb 22, 2024 · 3 comments · Fixed by #302

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@gregcaporaso
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Using the Moving Pictures tutorial feature table and sample metadata, the displayed per-sample counts in the feature-table summarize (and summarize-plus) visualizations doesn't have the sample ids, but rather what looks like default pandas.Index values. This can be reproduced as follows with those inputs:

qiime feature-table summarize --i-table table.qza --m-sample-metadata-file sample-metadata.tsv --output-dir out

Here's a screenshot of the output:

Screenshot 2024-02-22 at 10 34 50 AM

Also note that the highlighting seems to be off (three rows are red, when four should be), and the samples are sorted by ascending counts (rather than descending counts).

@gregcaporaso gregcaporaso transferred this issue from qiime2/q2-feature-classifier Feb 22, 2024
@lizgehret lizgehret linked a pull request Feb 22, 2024 that will close this issue
@lizgehret lizgehret added this to 2024.5 Feb 22, 2024
@github-project-automation github-project-automation bot moved this to Backlog in 2024.5 Feb 22, 2024
@lizgehret lizgehret moved this from Backlog to In Development in 2024.5 Feb 22, 2024
@nush320
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nush320 commented Feb 26, 2024

Hello, is this issue fixed? I am not sure I understand how to make my Sample IDs appear instead of the Index,

@gregcaporaso
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Hi @nush320, it is fixed and will be in a patch release that's coming out shortly. Keep an eye on the forum and we'll announce when that's ready, it should be next week at the latest. Sorry for the trouble!

@nush320
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nush320 commented Feb 28, 2024

Thank you! No worries. :))

@colinvwood colinvwood moved this from In Development to Changelog Needed in 2024.5 Apr 3, 2024
@lizgehret lizgehret moved this from Changelog Needed to Completed in 2024.5 May 29, 2024
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2 participants