MANIFEST

bin/viv.pl
bin/vtfp.pl
Build.PL
Changes
data/bcl2bam_phix_deplex_wtsi_stage1_template.vtf
data/bwa_post_proc.vtf
data/hiseqx.vtf
data/post_alignment.vtf
data/vtlib/alignment_common.json
data/vtlib/alignment_wtsi_stage2_humansplit_notargetalign_template.json
data/vtlib/alignment_wtsi_stage2_humansplit_template.json
data/vtlib/alignment_wtsi_stage2_template.json
data/vtlib/auxmerge_prep.json
data/vtlib/auxmerge_prep_realign.json
data/vtlib/bcl2bam_phix_deplex_wtsi_stage1_template.json
data/vtlib/bwa_aln_alignment.json
data/vtlib/bwa_aln_se_alignment.json
data/vtlib/bwa_mem_alignment.json
data/vtlib/final_output_noalign_prep.json
data/vtlib/final_output_prep.json
data/vtlib/merge_aligned.json
data/vtlib/merge_final_output_prep.json
data/vtlib/post_alignment.json
data/vtlib/pre_alignment.json
data/vtlib/pre_alignment_realign.json
data/vtlib/README.vtlib
data/vtlib/realignment_wtsi_template.json
data/vtlib/salmon_alignment.json
data/vtlib/seqchksum.json
data/vtlib/seqchksum_hs.json
data/vtlib/seqchksum_realign.json
data/vtlib/split_by_chromosome.json
data/vtlib/star_alignment.json
data/vtlib/tophat2_alignment.json
examples/bwa_aln_cfg.png
examples/bwa_mem/bwa_mem_alignment.vtf
examples/bwa_mem/generic_alignment_with_phix.vtf
examples/bwa_mem/post_alignment.vtf
examples/bwa_mem/post_alignment_filter.vtf
examples/bwa_mem/README.bwa_mem
examples/bwa_mem/seqchksum.vtf
examples/example_01.cfg
examples/example_02.cfg
examples/example_03.cfg
examples/example_04.cfg
examples/README.examples
examples/tophat2_cfg.png
MANIFEST			This list of files
README
README.vtfp
t/00-scripts_compile.t
t/10-vtfp-array_expansion.t
t/10-vtfp-param_ring.t
t/10-vtfp-pv.t
t/10-vtfp-subst_directive.t
t/data/10-vtfp-array_expansion.json
t/data/10-vtfp-param_ring.json
t/data/10-vtfp-pv.json
visualisation/bwa_aln.cfg
visualisation/bwa_aln.json
visualisation/cgi-bin/getProgress
visualisation/config_view.html
visualisation/edit.html
visualisation/p4_edit.css
visualisation/p4_edit.js
visualisation/README.visualisation
visualisation/tophat2.cfg
visualisation/tophat2.json
visualisation/view.js