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cannot install lumi package #10

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crhywun opened this issue Mar 10, 2023 · 1 comment
Open

cannot install lumi package #10

crhywun opened this issue Mar 10, 2023 · 1 comment

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@crhywun
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crhywun commented Mar 10, 2023 •
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cram/cram_io.c:53:10: fatal error: bzlib.h: No such file or directory
53 | #include <bzlib.h>
| ^~~~~~~~~
compilation terminated.
make[1]: *** [Makefile.Rhtslib:135: cram/cram_io.o] Error 1
make[1]: Leaving directory '/tmp/RtmpUB64Er/R.INSTALL5fa55ea1a1b/Rhtslib/src/htslib-1.15.1'
make: *** [Makevars.common:22: htslib] Error 2
ERROR: compilation failed for package ‘Rhtslib’

Is there anynoe can help me with it?
@crhywun crhywun changed the title cannot install cannot install lumi package Mar 10, 2023
@eitsupi
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eitsupi commented Mar 11, 2023

Perhaps you need to install libbz2-dev like sudo apt install libbz2-dev?
I recommend that you ask questions in the following repositories
https://github.com/Bioconductor/Rhtslib

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@crhywun @eitsupi