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Commit 300f6bf

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committedNov 12, 2015
Changed bsub time parameter
1 parent d64a215 commit 300f6bf

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‎bin/RunStructuralVariantPipeline_Delly.pl

+2-2
Original file line numberDiff line numberDiff line change
@@ -2548,7 +2548,7 @@ sub launchBsub {
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#Run Job with hold job id
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if ( $holdjobname ne "Null" ) {
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$bcmd =
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"$BSUB -q $queue -cwd $outdir -w \"$new_holdjobname\" -J $jobname -o $stdout -e $stderr -We 24:00 -R \"rusage[mem=$mem]\" -M $tmem -n $processors \"$cmd\"";
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"$BSUB -q $queue -cwd $outdir -w \"$new_holdjobname\" -J $jobname -o $stdout -e $stderr -We 1:00 -R \"rusage[mem=$mem]\" -M $tmem -n $processors \"$cmd\"";
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eval {
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print "CMD:$bcmd\n";
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`$bcmd`;
@@ -2562,7 +2562,7 @@ sub launchBsub {
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#Run Jobs without hold job Id
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if ( $holdjobname eq "Null" ) {
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$bcmd =
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"$BSUB -q $queue -cwd $outdir -J $jobname -o $stdout -e $stderr -R \"rusage[mem=$mem]\" -M $tmem -n $processors \"$cmd\"";
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"$BSUB -q $queue -cwd $outdir -J $jobname -o $stdout -e $stderr -We 2:00 -R \"rusage[mem=$mem]\" -M $tmem -n $processors \"$cmd\"";
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eval {
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print "CMD:$bcmd\n";
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`$bcmd`;

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