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Missing medication (MED) phenotypes #7

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maguirre1 opened this issue Feb 21, 2019 · 1 comment
Open

Missing medication (MED) phenotypes #7

maguirre1 opened this issue Feb 21, 2019 · 1 comment

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@maguirre1
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maguirre1 commented Feb 21, 2019 •
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There is likely an error in MED.py causing certain medication codes to be skipped. See issue #4. Data can be found at $OAK/users/magu/repos/rivas-lab/in_old_not_tools.txt
@maguirre1 maguirre1 mentioned this issue Feb 21, 2019
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@yk-tanigawa
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the original files are in /oak/stanford/groups/mrivas/private_data/ukbb/16698/phe/ukb9797_20170827_20003/

One can use ID conversion script
/oak/stanford/groups/mrivas/ukbb24983/ukb24983_16698_mapping.sh
for now

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@yk-tanigawa @maguirre1