switch to minted for code blocks

Author: ndawe

.gitignore

@@ -13,3 +13,4 @@
 *.pyg.lst
 *.pyg.sty
 *.cookie
+*.fdb_latexmk

README.rst

@@ -1,5 +1,5 @@
 Download and install garamond::
 
    wget http://tug.org/fonts/getnonfreefonts/install-getnonfreefonts
-   texlua install-getnonfreefonts
+   sudo texlua install-getnonfreefonts
    sudo getnonfreefonts-sys garamond

common/preamble.tex

@@ -7,8 +7,9 @@
 %\newenvironment{wideenumerate}{\enumerate\addtolength{\itemsep}{100pt}}{\endenumerate}
 
 %\usepackage{upquote}
-\usepackage{listings}
-\lstset{language=Python}
+%\usepackage{listings}
+%\lstset{language=Python}
+\usepackage{minted}
 
 % turn off hyphenation
 %\usepackage[none]{hyphenat}

overview/.gitignore

@@ -0,0 +1 @@
+_minted-rootpy-talk

overview/Makefile

@@ -1,5 +1,5 @@
 \begin{footnotesize}
-\begin{pyglist}[language=python,texcl=true,abovecaptionskip=0,style=vs,bgcolor=Moccasin]
+\begin{minted}{python}
 from ROOT import TTree, TFile
 from array import array
 from random import gauss
@@ -15,5 +15,5 @@
 
 tree.Write()
 output_file.Close()
-\end{pyglist}
+\end{minted}
 \end{footnotesize}

overview/examples/branch.tex

@@ -1,4 +1,4 @@
 \begin{footnotesize}
-\begin{pyglist}[language=text,texcl=true,abovecaptionskip=0,style=bw]
-\end{pyglist}
+\begin{minted}{text}
+\end{minted}
 \end{footnotesize}

overview/examples/branch_output.tex

@@ -1,5 +1,5 @@
 \begin{footnotesize}
-\begin{pyglist}[language=python,texcl=true,abovecaptionskip=0,style=vs,bgcolor=Moccasin]
+\begin{minted}{python}
 from rootpy.io import root_open
 from rootpy.tree import Tree, TreeModel
 from rootpy.types import FloatCol
@@ -14,5 +14,5 @@
         tree.variable = gauss(0, 1)
         tree.Fill()
     tree.Write()
-\end{pyglist}
+\end{minted}
 \end{footnotesize}

overview/examples/branch_rootpy.tex

@@ -1,4 +1,10 @@
 \begin{footnotesize}
-\begin{pyglist}[language=text,texcl=true,abovecaptionskip=0,style=bw]
-\end{pyglist}
+\begin{minted}{text}
+Traceback (most recent call last):
+  File "branch_rootpy.py.tmp", line 13, in <module>
+    from rootpy.types import FloatCol
+  File "/home/endw/software/ROOT/v6-06-02/lib/root/ROOT.py", line 303, in _importhook
+    return _orig_ihook( name, *args, **kwds )
+ImportError: No module named types
+\end{minted}
 \end{footnotesize}

overview/examples/branch_rootpy_output.tex

@@ -1,5 +1,5 @@
 \begin{footnotesize}
-\begin{pyglist}[language=python,texcl=true,abovecaptionskip=0,style=vs,bgcolor=Moccasin]
+\begin{minted}{python}
 from ROOT import TCanvas, TH1D
 
 def make_plot():
@@ -14,5 +14,5 @@
 canvas.Draw()
 # hack to keep Python from exiting while the canvas is displayed
 raw_input()
-\end{pyglist}
+\end{minted}
 \end{footnotesize}

overview/examples/canvas.tex

@@ -1,4 +1,4 @@
 \begin{footnotesize}
-\begin{pyglist}[language=text,texcl=true,abovecaptionskip=0,style=bw]
-\end{pyglist}
+\begin{minted}{text}
+\end{minted}
 \end{footnotesize}

overview/examples/canvas_output.tex

@@ -1,5 +1,5 @@
 \begin{footnotesize}
-\begin{pyglist}[language=python,texcl=true,abovecaptionskip=0,style=vs,bgcolor=Moccasin]
+\begin{minted}{python}
 from rootpy.plotting import Canvas, Hist
 from rootpy.interactive import wait
 
@@ -13,5 +13,5 @@
 canvas = make_plot()
 canvas.Draw()
 wait()
-\end{pyglist}
+\end{minted}
 \end{footnotesize}

overview/examples/canvas_rootpy.tex

@@ -1,4 +1,10 @@
 \begin{footnotesize}
-\begin{pyglist}[language=text,texcl=true,abovecaptionskip=0,style=bw]
-\end{pyglist}
+\begin{minted}{text}
+WARNING:rootpy.interactive.rootwait] unable to access ROOT's GUI thread either because PyROOT's
+                finalSetup() was called while in batch mode or because PyROOT
+                is using the new PyOS_InputHook-based mechanism that is not yet
+                supported in rootpy (PyConfig.StartGuiThread == 'inputhook' or
+                gSystem.InheritsFrom('TMacOSXSystem')). wait() etc. will
+                instead call raw_input() and wait for [Enter]
+\end{minted}
 \end{footnotesize}

overview/examples/canvas_rootpy_output.tex

@@ -1,5 +1,5 @@
 \begin{footnotesize}
-\begin{pyglist}[language=python,texcl=true,abovecaptionskip=0,style=vs,bgcolor=Moccasin]
+\begin{minted}{python}
 from ROOT import TCut
 
 cut1 = TCut('a<10')
@@ -10,5 +10,5 @@
     cut2.GetTitle()))
 
 print cut.GetTitle()
-\end{pyglist}
+\end{minted}
 \end{footnotesize}

overview/examples/cuts.tex

@@ -1,5 +1,5 @@
 \begin{footnotesize}
-\begin{pyglist}[language=text,texcl=true,abovecaptionskip=0,style=bw]
+\begin{minted}{text}
 (a<10)&&(b%2==0)
-\end{pyglist}
+\end{minted}
 \end{footnotesize}

overview/examples/cuts_output.tex

@@ -1,5 +1,5 @@
 \begin{footnotesize}
-\begin{pyglist}[language=python,texcl=true,abovecaptionskip=0,style=vs,bgcolor=Moccasin]
+\begin{minted}{python}
 from rootpy.tree import Cut
 
 cut1 = Cut('a < 10')
@@ -15,5 +15,5 @@
 # easily combine cuts arbitrarily
 cut = ((cut1 & cut2) | - cut3)
 print cut
-\end{pyglist}
+\end{minted}
 \end{footnotesize}

overview/examples/cuts_rootpy.tex

@@ -1,7 +1,7 @@
 \begin{footnotesize}
-\begin{pyglist}[language=text,texcl=true,abovecaptionskip=0,style=bw]
+\begin{minted}{text}
 (a<10)&&(b%2==0)
 (10<a)&&(a<20)
 ((a<10)&&(b%2==0))||(!((10<a)&&(a<20)))
-\end{pyglist}
+\end{minted}
 \end{footnotesize}

overview/examples/cuts_rootpy_output.tex

@@ -1,5 +1,5 @@
 \begin{footnotesize}
-\begin{pyglist}[language=python,texcl=true,abovecaptionskip=0,style=vs,bgcolor=Moccasin]
+\begin{minted}{python}
 from rootpy.testdata import get_file
 
 # use the test file shipped with rootpy
@@ -10,5 +10,5 @@
     for path, dirs, objects in f.walk():
         # do something
         print path, dirs, objects
-\end{pyglist}
+\end{minted}
 \end{footnotesize}

overview/examples/file.tex

@@ -1,5 +1,5 @@
 \begin{footnotesize}
-\begin{pyglist}[language=python,texcl=true,abovecaptionskip=0,style=vs,bgcolor=Moccasin]
+\begin{minted}{python}
 """
 ROOT is unable to open the file of course and emits an error message but an
 exception is not raised at this point leading to (sometimes difficult to
@@ -10,5 +10,5 @@
 myfile = TFile.Open("file_does_not_exist.root")
 print myfile
 myfile.Get("something")
-\end{pyglist}
+\end{minted}
 \end{footnotesize}

overview/examples/file_open.tex

@@ -1,10 +1,10 @@
 \begin{footnotesize}
-\begin{pyglist}[language=text,texcl=true,abovecaptionskip=0,style=bw]
+\begin{minted}{text}
 Error in <TFile::TFile>: file file_does_not_exist.root does not exist
 <ROOT.TFile object at 0x(nil)>
 Traceback (most recent call last):
-  File "file_open.py.tmp.py", line 13, in <module>
+  File "file_open.py.tmp", line 16, in <module>
     myfile.Get("something")
 ReferenceError: attempt to access a null-pointer
-\end{pyglist}
+\end{minted}
 \end{footnotesize}

overview/examples/file_open_output.tex

@@ -1,5 +1,5 @@
 \begin{footnotesize}
-\begin{pyglist}[language=python,texcl=true,abovecaptionskip=0,style=vs,bgcolor=Moccasin]
+\begin{minted}{python}
 """
 rootpy routes ROOT messages through Python`s logging system and raises error
 messages as Python exceptions at the point of failure:
@@ -9,5 +9,5 @@
 myfile = root_open("file_does_not_exist.root")
 print myfile
 myfile.Get("something")
-\end{pyglist}
+\end{minted}
 \end{footnotesize}

overview/examples/file_open_rootpy.tex

@@ -1,19 +1,15 @@
 \begin{footnotesize}
-\begin{pyglist}[language=text,texcl=true,abovecaptionskip=0,style=bw]
+\begin{minted}{text}
 ERROR:ROOT.TFile.TFile] file file_does_not_exist.root does not exist
-\end{pyglist}
-\end{footnotesize}
-\begin{tiny}
-\begin{pyglist}[language=text,texcl=true,abovecaptionskip=0,style=bw]
 Traceback (most recent call last):
-  File "file_open_rootpy.py.tmp.py", line 13, in <module>
+  File "file_open_rootpy.py.tmp", line 16, in <module>
     myfile = root_open("file_does_not_exist.root")
-  File "/home/endw/.local/lib/python2.7/site-packages/rootpy/io/file.py", line 224, in root_open
-    root_file = ROOT.TFile.Open(filename, mode)
-  File "/home/endw/.local/lib/python2.7/site-packages/rootpy/io/file.py", line 224, in root_open
-    root_file = ROOT.TFile.Open(filename, mode)
-  File "/home/endw/.local/lib/python2.7/site-packages/rootpy/logger/roothandler.py", line 91, in python_logging_error_handler
-    raise ROOTError(level, location, msg)
+  File "/home/endw/.local/lib/python2.7/site-packages/rootpy/io/file.py", line 138, in root_open
+    root_file = ROOT.R.TFile.Open(filename, mode)
+  File "/home/endw/.local/lib/python2.7/site-packages/rootpy/io/file.py", line 138, in root_open
+    root_file = ROOT.R.TFile.Open(filename, mode)
+  File "/home/endw/.local/lib/python2.7/site-packages/rootpy/logger/magic.py", line 247, in intercept_next_line
+    raise exception
 rootpy.ROOTError: level=3000, loc='TFile::TFile', msg='file file_does_not_exist.root does not exist'
-\end{pyglist}
-\end{tiny}
+\end{minted}
+\end{footnotesize}

overview/examples/file_open_rootpy_output.lock

@@ -1,11 +1,11 @@
 \begin{footnotesize}
-\begin{pyglist}[language=text,texcl=true,abovecaptionskip=0,style=bw]
+\begin{minted}{text}
  ['dimensions', 'scales', 'means', 'graphs', 'gaps', 'efficiencies'] []
 dimensions [] ['hist2d', 'hist3d']
 scales [] ['hist1', 'hist3', 'hist2', 'hist4']
 means [] ['hist1', 'hist3', 'hist2', 'hist4']
 graphs [] ['tgrapherrors', 'tgraph2d', 'tgraphasymmerrors', 'tgraph']
 gaps [] ['hist1', 'hist3', 'hist2', 'hist4']
 efficiencies [] ['hist1', 'hist3', 'hist2', 'hist4', 'eff3v1', 'eff2v1', 'eff4v1']
-\end{pyglist}
+\end{minted}
 \end{footnotesize}

overview/examples/file_open_rootpy_output.tex

@@ -1,5 +1,5 @@
 \begin{footnotesize}
-\begin{pyglist}[language=python,texcl=true,abovecaptionskip=0,style=vs,bgcolor=Moccasin]
+\begin{minted}{python}
 from ROOT import TH3D
 from array import array
 
@@ -11,5 +11,5 @@
 hist3d = TH3D('3d', '3d', 3, 0, 5,
                           5, array('d', [2.3, 4.2, 5.8, 10, 20, 25.5]),
                           2, array('d', [-100, 0, 20]))
-\end{pyglist}
+\end{minted}
 \end{footnotesize}

overview/examples/file_output.tex

@@ -1,18 +1,18 @@
 \begin{footnotesize}
-\begin{pyglist}[language=text,texcl=true,abovecaptionskip=0,style=bw]
+\begin{minted}{text}
 Traceback (most recent call last):
-  File "hist.py.tmp.py", line 15, in <module>
+  File "hist.py.tmp", line 18, in <module>
     2, array('d', [-100, 0, 20]))
 TypeError: none of the 5 overloaded methods succeeded. Full details:
   TH3D::TH3D() =>
     takes at most 0 arguments (9 given)
   TH3D::TH3D(const TH3D& h3d) =>
     takes at most 1 arguments (9 given)
-  TH3D::TH3D(const char* name, const char* title, Int_t nbinsx, Double_t xlow, Double_t xup, Int_t nbinsy, Double_t ylow, Double_t yup, Int_t nbinsz, Double_t zlow, Double_t zup) =>
+  TH3D::TH3D(const char* name, const char* title, int nbinsx, double xlow, double xup, int nbinsy, double ylow, double yup, int nbinsz, double zlow, double zup) =>
     takes at least 11 arguments (9 given)
-  TH3D::TH3D(const char* name, const char* title, Int_t nbinsx, const Float_t* xbins, Int_t nbinsy, const Float_t* ybins, Int_t nbinsz, const Float_t* zbins) =>
+  TH3D::TH3D(const char* name, const char* title, int nbinsx, const float* xbins, int nbinsy, const float* ybins, int nbinsz, const float* zbins) =>
     takes at most 8 arguments (9 given)
-  TH3D::TH3D(const char* name, const char* title, Int_t nbinsx, const Double_t* xbins, Int_t nbinsy, const Double_t* ybins, Int_t nbinsz, const Double_t* zbins) =>
+  TH3D::TH3D(const char* name, const char* title, int nbinsx, const double* xbins, int nbinsy, const double* ybins, int nbinsz, const double* zbins) =>
     takes at most 8 arguments (9 given)
-\end{pyglist}
+\end{minted}
 \end{footnotesize}

overview/examples/hist.tex

@@ -1,10 +1,10 @@
 \begin{footnotesize}
-\begin{pyglist}[language=python,texcl=true,abovecaptionskip=0,style=vs,bgcolor=Moccasin]
+\begin{minted}{python}
 from rootpy.plotting import Hist3D
 
 # variable width bins
 hist3d = Hist3D([0, 3, 10, 100], [2.3, 4.2, 5.8, 10, 20, 25.5], [-100, 0, 20])
 # easy to mix variable and fixed width bins with rootpy
 hist3d = Hist3D(3, 0, 5, [2.3, 4.2, 5.8, 10, 20, 25.5], [-100, 0, 20])
-\end{pyglist}
+\end{minted}
 \end{footnotesize}

overview/examples/hist_output.tex

@@ -1,5 +1,5 @@
 \begin{footnotesize}
-\begin{pyglist}[language=python,texcl=true,abovecaptionskip=0,style=vs,bgcolor=Moccasin]
+\begin{minted}{python}
 from rootpy.plotting import Hist, Hist2D, Hist3D
 
 # create a 1D histogram
@@ -22,5 +22,5 @@
 h.linecolor = 'blue'
 h.fillcolor = 'green'
 h.fillstyle = '/'
-\end{pyglist}
+\end{minted}
 \end{footnotesize}

overview/examples/hist_rootpy.tex

@@ -1,4 +1,4 @@
 \begin{footnotesize}
-\begin{pyglist}[language=text,texcl=true,abovecaptionskip=0,style=bw]
-\end{pyglist}
+\begin{minted}{text}
+\end{minted}
 \end{footnotesize}

overview/examples/hist_rootpy_2.tex

@@ -1,4 +1,4 @@
 \begin{footnotesize}
-\begin{pyglist}[language=text,texcl=true,abovecaptionskip=0,style=bw]
-\end{pyglist}
+\begin{minted}{text}
+\end{minted}
 \end{footnotesize}

overview/examples/hist_rootpy_2_output.tex

@@ -1,5 +1,5 @@
 \begin{footnotesize}
-\begin{pyglist}[language=python,texcl=true,abovecaptionskip=0,style=vs,bgcolor=Moccasin]
+\begin{minted}{python}
 from ROOT import TCanvas, TH1D
 
 def make_plot():
@@ -18,5 +18,5 @@
 # hack to keep Python from exiting
 # while the canvas is displayed
 raw_input()
-\end{pyglist}
+\end{minted}
 \end{footnotesize}

overview/examples/hist_rootpy_output.tex

@@ -1,4 +1,4 @@
 \begin{footnotesize}
-\begin{pyglist}[language=text,texcl=true,abovecaptionskip=0,style=bw]
-\end{pyglist}
+\begin{minted}{text}
+\end{minted}
 \end{footnotesize}

overview/examples/memory.tex

@@ -1,5 +1,5 @@
 \begin{footnotesize}
-\begin{pyglist}[language=python,texcl=true,abovecaptionskip=0,style=vs,bgcolor=Moccasin]
+\begin{minted}{python}
 from rootpy.plotting import Canvas, Hist
 from rootpy.interactive import wait
 
@@ -13,5 +13,5 @@
 canvas = make_plot()
 canvas.Draw()
 wait()
-\end{pyglist}
+\end{minted}
 \end{footnotesize}

overview/examples/memory_output.tex

@@ -1,4 +1,10 @@
 \begin{footnotesize}
-\begin{pyglist}[language=text,texcl=true,abovecaptionskip=0,style=bw]
-\end{pyglist}
+\begin{minted}{text}
+WARNING:rootpy.interactive.rootwait] unable to access ROOT's GUI thread either because PyROOT's
+                finalSetup() was called while in batch mode or because PyROOT
+                is using the new PyOS_InputHook-based mechanism that is not yet
+                supported in rootpy (PyConfig.StartGuiThread == 'inputhook' or
+                gSystem.InheritsFrom('TMacOSXSystem')). wait() etc. will
+                instead call raw_input() and wait for [Enter]
+\end{minted}
 \end{footnotesize}