From 041cf6ee7139206cd9552cb0897b2e1fdca10a56 Mon Sep 17 00:00:00 2001 From: "Alec L. Robitaille" Date: Thu, 30 Jan 2025 21:06:48 +0000 Subject: [PATCH 1/9] add details for MEE process in guide for authors --- softwarereview_author.Rmd | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/softwarereview_author.Rmd b/softwarereview_author.Rmd index de1417d8a..24a84bcda 100644 --- a/softwarereview_author.Rmd +++ b/softwarereview_author.Rmd @@ -32,8 +32,9 @@ This concise guide presents the software peer review process for you as a packag - All submissions are automatically checked by our [pkgcheck](https://docs.ropensci.org/pkgcheck/) system to ensure packages follow our guidelines. All authors are expected to have run [the main `pkgcheck` function](https://docs.ropensci.org/pkgcheck/reference/pkgcheck.html) locally to confirm that the package is ready to be submitted. Alternatively, an even easier way to ensure a package is ready for submission is to use [the `pkgcheck` GitHub Action](https://github.com/ropensci-review-tools/pkgcheck-action) to run `pkgcheck` as a GitHub Action, as described in [our blog post](https://ropensci.org/blog/2022/02/01/pkgcheck-action/). - If your package requires unusual system dependencies (see [*Packaging Guide*](#pkgdependencies)) for our GitHub Action to pass, please submit a pull request adding them to [our base Dockerfile](https://github.com/ropensci-review-tools/pkgcheck/blob/main/Dockerfile). - If there are any aspects of `pkgcheck` which your package is unable to pass, please explain reasons in your submission template. -- If you feel your package is in scope for the - [Journal of Open-Source Software](https://joss.theoj.org/) (JOSS), do not submit it to JOSS consideration until after the rOpenSci review process is over: if your package is deemed in scope by JOSS editors, only the accompanying short paper would be reviewed, (not the software that will have been extended reviewed by rOpenSci by that time). Not all rOpenSci packages will meet the criteria for JOSS. +- If you intend to submit an accompanying manuscript for your package, rOpenSci has a collaborative partnership with the [Journal of Open-Source Software](https://joss.theoj.org/) and [Methods in Ecology and Evolution](https://besjournals.onlinelibrary.wiley.com/journal/2041210X): + - For a submission to Journal of Open-Source Software (JOSS), do not submit it to JOSS consideration until after the rOpenSci review process is over: if your package is deemed in scope by JOSS editors, only the accompanying short paper would be reviewed, (not the software that will have been extended reviewed by rOpenSci by that time). Not all rOpenSci packages will meet the criteria for JOSS. +- For a submission to Methods in Ecology and Evolution (MEE), submit it to MEE only after the rOpenSci review process is over, either before or after the package has been accepted. The review collaboration with MEE was introduced in [this blog post](https://ropensci.org/blog/2017/11/29/review-collaboration-mee/). The relevant article type for MEE is Application, see [here](https://besjournals.onlinelibrary.wiley.com/hub/journal/2041210X/features/applicationpapers) for more details. ## The Submission Process {#the-submission-process} From d188bfe8086728d64e2a020b672b478ac4a95b41 Mon Sep 17 00:00:00 2001 From: "Alec L. Robitaille" Date: Thu, 30 Jan 2025 21:12:43 +0000 Subject: [PATCH 2/9] fix indent --- softwarereview_author.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/softwarereview_author.Rmd b/softwarereview_author.Rmd index 24a84bcda..0343bfc3a 100644 --- a/softwarereview_author.Rmd +++ b/softwarereview_author.Rmd @@ -34,7 +34,7 @@ This concise guide presents the software peer review process for you as a packag - If there are any aspects of `pkgcheck` which your package is unable to pass, please explain reasons in your submission template. - If you intend to submit an accompanying manuscript for your package, rOpenSci has a collaborative partnership with the [Journal of Open-Source Software](https://joss.theoj.org/) and [Methods in Ecology and Evolution](https://besjournals.onlinelibrary.wiley.com/journal/2041210X): - For a submission to Journal of Open-Source Software (JOSS), do not submit it to JOSS consideration until after the rOpenSci review process is over: if your package is deemed in scope by JOSS editors, only the accompanying short paper would be reviewed, (not the software that will have been extended reviewed by rOpenSci by that time). Not all rOpenSci packages will meet the criteria for JOSS. -- For a submission to Methods in Ecology and Evolution (MEE), submit it to MEE only after the rOpenSci review process is over, either before or after the package has been accepted. The review collaboration with MEE was introduced in [this blog post](https://ropensci.org/blog/2017/11/29/review-collaboration-mee/). The relevant article type for MEE is Application, see [here](https://besjournals.onlinelibrary.wiley.com/hub/journal/2041210X/features/applicationpapers) for more details. + - For a submission to Methods in Ecology and Evolution (MEE), submit it to MEE only after the rOpenSci review process is over, either before or after the package has been accepted. The review collaboration with MEE was introduced in [this blog post](https://ropensci.org/blog/2017/11/29/review-collaboration-mee/). The relevant article type for MEE is Application, see [here](https://besjournals.onlinelibrary.wiley.com/hub/journal/2041210X/features/applicationpapers) for more details. ## The Submission Process {#the-submission-process} From 1e177850d3836e8318ac24430dd821e605bd426d Mon Sep 17 00:00:00 2001 From: "Alec L. Robitaille" Date: Thu, 30 Jan 2025 21:20:35 +0000 Subject: [PATCH 3/9] add details for MEE process in guide for editors --- softwarereview_editor.Rmd | 1 + 1 file changed, 1 insertion(+) diff --git a/softwarereview_editor.Rmd b/softwarereview_editor.Rmd index 56246aaa4..6d37d8315 100644 --- a/softwarereview_editor.Rmd +++ b/softwarereview_editor.Rmd @@ -107,6 +107,7 @@ Each submission should be reviewed by *two* package reviewers. Although it is fi - Record the review via typing a new comment `@ropensci-review-bot submit review time