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diff --git a/docs/data.json b/docs/data.json
index b9781054f..a2c407bee 100644
--- a/docs/data.json
+++ b/docs/data.json
@@ -1,7571 +1,7518 @@
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-        "description": "[A python tool box for GPUMD simulations](https://calorine.materialsmodeling.org/)",
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+        "description": "A MATLAB codebase to analyze TEM images of soot, which includes new methods associated with this project and a compilation of other pre-existing methods into a single package.",
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-            "camera",
-            "ccd",
-            "cmos",
-            "detector",
-            "imaging",
-            "mct",
-            "pixel",
-            "python",
-            "simulation"
+            "soot",
+            "aggregates",
+            "transmission-electron-microscopy",
+            "particle-size-distribution",
+            "tem",
+            "tem-images",
+            "particle-diameter",
+            "aerosols",
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-        "description": null,
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+        "avatar": "https://avatars.githubusercontent.com/u/5617132?v=4",
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-        "avatar": "https://gitlab.comNone",
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+        "avatar": "https://avatars.githubusercontent.com/u/5617132?v=4",
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-        "avatar": "https://gitlab.comNone",
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+        "rel": "/software/repository/github/asgr/hyper.fit",
+        "avatar": "https://avatars.githubusercontent.com/u/5617132?v=4",
+        "description": "The hyper.fit hyperplane fitting package.",
         "topics": []
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-        "avatar": "https://gitlab.comNone",
-        "description": "InspectorCell provides an efficient workflow and graphical interface to generate high-quality training datasets from\r\nhighly multiplexed microscopy images.",
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+        "rel": "/software/repository/github/asgr/ProSpect",
+        "avatar": "https://avatars.githubusercontent.com/u/5617132?v=4",
+        "description": "Spectral Generation Package",
         "topics": []
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-        "topics": [
-            "energy transition",
-            "geothermal energy production",
-            "modeling of CO2 sequestration"
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+        "uid": "github/asgr/ProFound",
+        "url": "https://github.com/asgr/ProFound",
+        "rel": "/software/repository/github/asgr/ProFound",
+        "avatar": "https://avatars.githubusercontent.com/u/5617132?v=4",
+        "description": "ProFound source finding and extraction",
+        "topics": []
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-        "description": "**phylostems** is a graphical tool developped by CIRAD (UMR PVBMT) to explore temporal signal at various evolutionary scales in heterochronous nucleic acid sequences datasets.",
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+        "url": "https://github.com/asgr/Rwcs",
+        "rel": "/software/repository/github/asgr/Rwcs",
+        "avatar": "https://avatars.githubusercontent.com/u/5617132?v=4",
+        "description": "Interface to C wcslib",
         "topics": []
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-        "url": "https://gitlab.com/aroffringa/aoflagger",
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-        "description": "The AOFlagger is a tool that can find and remove radio-frequency interference (RFI) in radio astronomical observations. It can make use of Lua scripts to make flagging strategies flexible, and the tools are applicable to a wide set of telescopes.",
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+        "url": "https://github.com/asgr/ProFuse",
+        "rel": "/software/repository/github/asgr/ProFuse",
+        "avatar": "https://avatars.githubusercontent.com/u/5617132?v=4",
+        "description": "ProFound + ProFit + ProSpect = ProFuse",
         "topics": []
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+        "url": "https://github.com/asgr/celestial",
+        "rel": "/software/repository/github/asgr/celestial",
+        "avatar": "https://avatars.githubusercontent.com/u/5617132?v=4",
+        "description": "celestial R package",
         "topics": []
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-        "url": "https://gitlab.com/picos-api/picos",
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-        "description": "A Python interface to conic optimization solvers.",
-        "topics": [
-            "math",
-            "optimization",
-            "python"
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+        "url": "https://github.com/asgr/Rfits",
+        "rel": "/software/repository/github/asgr/Rfits",
+        "avatar": "https://avatars.githubusercontent.com/u/5617132?v=4",
+        "description": "Rfits stuff",
+        "topics": []
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-        "url": "https://gitlab.com/eduardo-vitral/balrogo",
-        "rel": "/software/repository/gitlab/eduardo-vitral/balrogo",
-        "avatar": "https://gitlab.com/eduardo-vitral/balrogo/-/avatar",
-        "description": "Bayesian Astrometric Likelihood Recovery of Galactic Objects",
+        "uid": "github/mackelab/sbi",
+        "url": "https://github.com/mackelab/sbi",
+        "rel": "/software/repository/github/mackelab/sbi",
+        "avatar": "https://avatars0.githubusercontent.com/u/9674966?v=4",
+        "description": "Simulation-based inference in PyTorch",
         "topics": []
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-        "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/14144828/logo_ship.png",
-        "description": "",
+        "uid": "github/agsreejith/CONTROL",
+        "url": "https://github.com/agsreejith/CONTROL",
+        "rel": "/software/repository/github/agsreejith/CONTROL",
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+        "description": "V1.0 of CUTE data reduction pipeline",
         "topics": []
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-        "rel": "/software/repository/gitlab/davidtourigny/dynamic-fba",
-        "avatar": "https://gitlab.comNone",
-        "description": "",
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+        "url": "https://github.com/cosmodesi/pycorr",
+        "rel": "/software/repository/github/cosmodesi/pycorr",
+        "avatar": "https://avatars.githubusercontent.com/u/8990486?v=4",
+        "description": "2-pt correlation function estimation",
         "topics": []
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-        "url": "https://gitlab.com/emd-dev/emd",
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-        "description": "Empirical Mode Decomposition in Python\r\n\r\n<a href=\"https://gitlab.com/ajquinn/emd/commits/master\"><img alt=\"pipeline status\" src=\"https://gitlab.com/ajquinn/emd/badges/master/pipeline.svg\" /></a>",
+        "uid": "github/pirl-unc/ace",
+        "url": "https://github.com/pirl-unc/ace",
+        "rel": "/software/repository/github/pirl-unc/ace",
+        "avatar": "https://avatars.githubusercontent.com/u/71463575?v=4",
+        "description": null,
         "topics": []
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-        "uid": "gitlab/mainlabwsu/bims",
-        "url": "https://gitlab.com/mainlabwsu/bims",
-        "rel": "/software/repository/gitlab/mainlabwsu/bims",
-        "avatar": "https://gitlab.comNone",
-        "description": "BIMS",
+        "uid": "github/abelson-lab/smMIP-tools",
+        "url": "https://github.com/abelson-lab/smMIP-tools",
+        "rel": "/software/repository/github/abelson-lab/smMIP-tools",
+        "avatar": "https://avatars.githubusercontent.com/u/49252737?v=4",
+        "description": null,
         "topics": []
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-        "uid": "gitlab/chjordan/sslf",
-        "url": "https://gitlab.com/chjordan/sslf",
-        "rel": "/software/repository/gitlab/chjordan/sslf",
-        "avatar": "https://gitlab.comNone",
-        "description": "Simple Spectral Line Finder",
+        "uid": "github/SharmaLlama/ticktack",
+        "url": "https://github.com/SharmaLlama/ticktack",
+        "rel": "/software/repository/github/SharmaLlama/ticktack",
+        "avatar": "https://avatars.githubusercontent.com/u/72532670?v=4",
+        "description": "An open-source carbon box model implementation built on JAX.",
         "topics": []
     },
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-        "url": "https://gitlab.com/ezlab/busco",
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-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/1544766/Screen_Shot_2019-11-26_at_17.26.57.png",
-        "description": "Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs (BUSCO)",
-        "topics": []
+        "uid": "github/lh3/seqtk",
+        "url": "https://github.com/lh3/seqtk",
+        "rel": "/software/repository/github/lh3/seqtk",
+        "avatar": "https://avatars.githubusercontent.com/u/480346?v=4",
+        "description": "Toolkit for processing sequences in FASTA/Q formats",
+        "topics": [
+            "bioinformatics",
+            "sequence-analysis"
+        ]
     },
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-        "url": "https://gitlab.com/paulklemm_PHD/proteinortho",
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-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/7278443/icon4.png",
-        "description": "Proteinortho is a tool to detect orthologous genes within different species. [(Download)](https://gitlab.com/paulklemm_PHD/proteinortho/-/archive/master/proteinortho-master.tar.gz)",
+        "uid": "github/lh3/bgt",
+        "url": "https://github.com/lh3/bgt",
+        "rel": "/software/repository/github/lh3/bgt",
+        "avatar": "https://avatars.githubusercontent.com/u/480346?v=4",
+        "description": "Flexible genotype query among 30,000+ samples whole-genome",
         "topics": [
             "bioinformatics",
-            "orthology",
-            "orthology inference"
+            "genomics"
         ]
     },
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-        "url": "https://gitlab.com/qc-devs/aqcnes",
-        "rel": "/software/repository/gitlab/qc-devs/aqcnes",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/60711361/ThermalExpansion_Subdomain.png",
-        "description": "Mirror of https://gitlab.ethz.ch/mechanics-and-materials/aqcnes/",
-        "topics": []
+        "uid": "github/lh3/bedtk",
+        "url": "https://github.com/lh3/bedtk",
+        "rel": "/software/repository/github/lh3/bedtk",
+        "avatar": "https://avatars.githubusercontent.com/u/480346?v=4",
+        "description": "A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)",
+        "topics": [
+            "bioinformatics"
+        ]
     },
     {
-        "uid": "gitlab/sevecekp/sph",
-        "url": "https://gitlab.com/sevecekp/sph",
-        "rel": "/software/repository/gitlab/sevecekp/sph",
-        "avatar": "https://gitlab.comNone",
-        "description": "Library and graphical tools for running SPH and N-body simulations.",
+        "uid": "github/lh3/bfc",
+        "url": "https://github.com/lh3/bfc",
+        "rel": "/software/repository/github/lh3/bfc",
+        "avatar": "https://avatars.githubusercontent.com/u/480346?v=4",
+        "description": "High-performance error correction for Illumina resequencing data",
         "topics": [
-            "SPH",
-            "nbody",
-            "opensph",
-            "simulation"
+            "bioinformatics",
+            "genomics"
         ]
     },
     {
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-        "url": "https://gitlab.com/elsi_project/elsi_interface",
-        "rel": "/software/repository/gitlab/elsi_project/elsi_interface",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/20804728/elsi_200629.png",
-        "description": "ELSI:  A software interface designed for electronic structure codes to connect with ELPA, libOMM, PEXSI, EigenExa, SLEPc, NTPoly, BSEPACK, LAPACK, MAGMA, and other solver libraries.",
-        "topics": []
+        "uid": "github/lh3/wgsim",
+        "url": "https://github.com/lh3/wgsim",
+        "rel": "/software/repository/github/lh3/wgsim",
+        "avatar": "https://avatars.githubusercontent.com/u/480346?v=4",
+        "description": "Reads simulator",
+        "topics": [
+            "bioinformatics",
+            "genomics"
+        ]
     },
     {
-        "uid": "gitlab/mobse/source-code",
-        "url": "https://gitlab.com/mobse/source-code",
-        "rel": "/software/repository/gitlab/mobse/source-code",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/15981708/mobse_code_copia.png",
-        "description": null,
-        "topics": []
+        "uid": "github/lh3/minimap2",
+        "url": "https://github.com/lh3/minimap2",
+        "rel": "/software/repository/github/lh3/minimap2",
+        "avatar": "https://avatars.githubusercontent.com/u/480346?v=4",
+        "description": "A versatile pairwise aligner for genomic and spliced nucleotide sequences",
+        "topics": [
+            "bioinformatics",
+            "sequence-alignment",
+            "spliced-alignment",
+            "genomics"
+        ]
     },
     {
-        "uid": "gitlab/ChemBioHub/tpmap",
-        "url": "https://gitlab.com/ChemBioHub/tpmap",
-        "rel": "/software/repository/gitlab/ChemBioHub/tpmap",
-        "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/18237261/favicon.png",
-        "description": "Thermal Profiling Meltome Analysis Program",
-        "topics": []
+        "uid": "github/lh3/bioawk",
+        "url": "https://github.com/lh3/bioawk",
+        "rel": "/software/repository/github/lh3/bioawk",
+        "avatar": "https://avatars.githubusercontent.com/u/480346?v=4",
+        "description": "BWK awk modified for biological data",
+        "topics": [
+            "bioinformatics",
+            "sequence-analysis"
+        ]
     },
     {
-        "uid": "gitlab/project-dare/dare-platform",
-        "url": "https://gitlab.com/project-dare/dare-platform",
-        "rel": "/software/repository/gitlab/project-dare/dare-platform",
-        "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/14873006/dare.png",
-        "description": "",
-        "topics": []
+        "uid": "github/lh3/fermi-lite",
+        "url": "https://github.com/lh3/fermi-lite",
+        "rel": "/software/repository/github/lh3/fermi-lite",
+        "avatar": "https://avatars.githubusercontent.com/u/480346?v=4",
+        "description": "Standalone C library for assembling Illumina short reads in small regions",
+        "topics": [
+            "bioinformatics",
+            "genomics",
+            "denovo-assembly"
+        ]
     },
     {
-        "uid": "gitlab/fibreglass/pivc",
-        "url": "https://gitlab.com/fibreglass/pivc",
-        "rel": "/software/repository/gitlab/fibreglass/pivc",
-        "avatar": "https://gitlab.comNone",
-        "description": null,
+        "uid": "github/lh3/miniasm",
+        "url": "https://github.com/lh3/miniasm",
+        "rel": "/software/repository/github/lh3/miniasm",
+        "avatar": "https://avatars.githubusercontent.com/u/480346?v=4",
+        "description": "Ultrafast de novo assembly for long noisy reads (though having no consensus step)",
+        "topics": [
+            "bioinformatics",
+            "genomics",
+            "denovo-assembly"
+        ]
+    },
+    {
+        "uid": "github/cancerit/alleleCount",
+        "url": "https://github.com/cancerit/alleleCount",
+        "rel": "/software/repository/github/cancerit/alleleCount",
+        "avatar": "https://avatars.githubusercontent.com/u/7450587?v=4",
+        "description": "Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings)",
         "topics": []
     },
     {
-        "uid": "gitlab/german.tischler/libmaus2",
-        "url": "https://gitlab.com/german.tischler/libmaus2",
-        "rel": "/software/repository/gitlab/german.tischler/libmaus2",
-        "avatar": "https://gitlab.comNone",
-        "description": "collection of data structures and algorithms",
+        "uid": "github/eltevo/steps",
+        "url": "https://github.com/eltevo/StePS",
+        "rel": "/software/repository/github/eltevo/steps",
+        "avatar": "https://avatars.githubusercontent.com/u/12859392?v=4",
+        "description": "Stereographically Projected Cosmological Simulations",
         "topics": []
     },
     {
-        "uid": "gitlab/german.tischler/biobambam2",
-        "url": "https://gitlab.com/german.tischler/biobambam2",
-        "rel": "/software/repository/gitlab/german.tischler/biobambam2",
-        "avatar": "https://gitlab.comNone",
-        "description": "Tools for early stage alignment file processing",
+        "uid": "github/li-shaochuan/SEDIM",
+        "url": "https://github.com/li-shaochuan/SEDIM",
+        "rel": "/software/repository/github/li-shaochuan/SEDIM",
+        "avatar": "https://avatars.githubusercontent.com/u/52021016?v=4",
+        "description": null,
         "topics": []
     },
     {
-        "uid": "gitlab/ampere2/metalwalls",
-        "url": "https://gitlab.com/ampere2/metalwalls",
-        "rel": "/software/repository/gitlab/ampere2/metalwalls",
-        "avatar": "https://gitlab.comNone",
-        "description": "",
+        "uid": "github/shenlab-sinai/ngsplot",
+        "url": "https://github.com/shenlab-sinai/ngsplot",
+        "rel": "/software/repository/github/shenlab-sinai/ngsplot",
+        "avatar": "https://avatars.githubusercontent.com/u/5775936?v=4",
+        "description": "Quick mining and visualization of NGS data by integrating genomic databases",
         "topics": []
     },
     {
-        "uid": "gitlab/Molcas/OpenMolcas",
-        "url": "https://gitlab.com/Molcas/OpenMolcas",
-        "rel": "/software/repository/gitlab/Molcas/OpenMolcas",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/3536517/logo_open_flat.png",
-        "description": "OpenMolcas is a quantum chemistry software package.\r\n\r\nThe key feature of OpenMolcas is the multiconfigurational approach to the electronic structure.",
+        "uid": "github/VegeWaterDynamics/motrainer",
+        "url": "https://github.com/VegeWaterDynamics/motrainer",
+        "rel": "/software/repository/github/VegeWaterDynamics/motrainer",
+        "avatar": "https://avatars.githubusercontent.com/u/62881306?v=4",
+        "description": "Distributed Measurement Operator Trainer for Data Assimilation Applications",
         "topics": [
-            "chemistry",
-            "physics",
-            "quantum"
+            "data-assimilation",
+            "distributed-computing",
+            "kalman-filter",
+            "machine-learning"
         ]
     },
     {
-        "uid": "gitlab/mauricemolli/petitRADTRANS",
-        "url": "https://gitlab.com/mauricemolli/petitRADTRANS",
-        "rel": "/software/repository/gitlab/mauricemolli/petitRADTRANS",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/4048028/logo_radtrans.gif",
-        "description": null,
-        "topics": []
-    },
-    {
-        "uid": "gitlab/mcfuman/SpectraPy",
-        "url": "https://gitlab.com/mcfuman/SpectraPy",
-        "rel": "/software/repository/gitlab/mcfuman/SpectraPy",
-        "avatar": "https://gitlab.comNone",
-        "description": "Python module to extract and reduce astronomical spectral data",
-        "topics": []
+        "uid": "github/frank1010111/pywaterflood",
+        "url": "https://github.com/frank1010111/pywaterflood",
+        "rel": "/software/repository/github/frank1010111/pywaterflood",
+        "avatar": "https://avatars.githubusercontent.com/u/4694479?v=4",
+        "description": "Capacitance resistance models for waterflood connectivity",
+        "topics": [
+            "python",
+            "petroleum-engineering",
+            "reservoir",
+            "rust"
+        ]
     },
     {
-        "uid": "gitlab/chrjan/seq-seq-pan",
-        "url": "https://gitlab.com/chrjan/seq-seq-pan",
-        "rel": "/software/repository/gitlab/chrjan/seq-seq-pan",
-        "avatar": "https://gitlab.comNone",
-        "description": "seq-seq-pan is a workflow for the SEQuential alignment of SEQuences to build a PAN-genome data structure and a whole-genome-alignment.",
+        "uid": "github/frank1010111/bluebonnet",
+        "url": "https://github.com/frank1010111/bluebonnet",
+        "rel": "/software/repository/github/frank1010111/bluebonnet",
+        "avatar": "https://avatars.githubusercontent.com/u/4694479?v=4",
+        "description": "Scaling solutions for production analysis from unconventional oil and gas wells",
         "topics": []
     },
     {
-        "uid": "gitlab/fduchate/predihood",
-        "url": "https://gitlab.com/fduchate/predihood",
-        "rel": "/software/repository/gitlab/fduchate/predihood",
-        "avatar": "https://gitlab.comNone",
-        "description": "",
+        "uid": "github/nanoporetech/flappie",
+        "url": "https://github.com/nanoporetech/flappie",
+        "rel": "/software/repository/github/nanoporetech/flappie",
+        "avatar": "https://avatars.githubusercontent.com/u/7668184?v=4",
+        "description": "Flip-flop basecaller for Oxford Nanopore reads",
         "topics": []
     },
     {
-        "uid": "gitlab/JuditGG/trumpetplots",
-        "url": "https://gitlab.com/JuditGG/trumpetplots",
-        "rel": "/software/repository/gitlab/JuditGG/trumpetplots",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/45249770/trumpet-icon-design-free-vector.jpg",
-        "description": "Rpackage for Trumpet plots",
+        "uid": "github/nanoporetech/medaka",
+        "url": "https://github.com/nanoporetech/medaka",
+        "rel": "/software/repository/github/nanoporetech/medaka",
+        "avatar": "https://avatars.githubusercontent.com/u/7668184?v=4",
+        "description": "Sequence correction provided by ONT Research",
         "topics": [
-            "genetics",
-            "gwas",
-            "visualization"
+            "nanopore",
+            "medaka"
         ]
     },
     {
-        "uid": "gitlab/andrea-tango/ficos",
-        "url": "https://gitlab.com/andrea-tango/ficos",
-        "rel": "/software/repository/gitlab/andrea-tango/ficos",
-        "avatar": "https://gitlab.comNone",
-        "description": "",
+        "uid": "github/nanoporetech/scrappie",
+        "url": "https://github.com/nanoporetech/scrappie",
+        "rel": "/software/repository/github/nanoporetech/scrappie",
+        "avatar": "https://avatars.githubusercontent.com/u/7668184?v=4",
+        "description": "Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group",
         "topics": []
     },
     {
-        "uid": "gitlab/moerman1/fhi-cc4s",
-        "url": "https://gitlab.com/moerman1/fhi-cc4s",
-        "rel": "/software/repository/gitlab/moerman1/fhi-cc4s",
-        "avatar": "https://gitlab.comNone",
-        "description": "This project constitutes the interface between the Fritz Haber Institute ab initio molecular simulations (FHI-aims) and the Coupled Cluster for Solids (CC4S) code developed by Felix Hummel and Adreas Grueneis at the TU Wien. \r\n",
+        "uid": "github/nanoporetech/ont_fast5_api",
+        "url": "https://github.com/nanoporetech/ont_fast5_api",
+        "rel": "/software/repository/github/nanoporetech/ont_fast5_api",
+        "avatar": "https://avatars.githubusercontent.com/u/7668184?v=4",
+        "description": "Oxford Nanopore Technologies fast5 API software",
         "topics": []
     },
     {
-        "uid": "gitlab/petsc/petsc",
-        "url": "https://gitlab.com/petsc/petsc",
-        "rel": "/software/repository/gitlab/petsc/petsc",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/13882401/PETSc_RBG-logo.png",
-        "description": "PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations.",
+        "uid": "github/nanoporetech/pinfish",
+        "url": "https://github.com/nanoporetech/pinfish",
+        "rel": "/software/repository/github/nanoporetech/pinfish",
+        "avatar": "https://avatars.githubusercontent.com/u/7668184?v=4",
+        "description": "Tools to annotate genomes using long read transcriptomics data",
+        "topics": [
+            "rna-seq",
+            "cdna",
+            "transcriptomics",
+            "genome-annotation",
+            "nanopore"
+        ]
+    },
+    {
+        "uid": "github/nanoporetech/pomoxis",
+        "url": "https://github.com/nanoporetech/pomoxis",
+        "rel": "/software/repository/github/nanoporetech/pomoxis",
+        "avatar": "https://avatars.githubusercontent.com/u/7668184?v=4",
+        "description": "Analysis components from Oxford Nanopore Research",
         "topics": []
     },
     {
-        "uid": "gitlab/magnumpi/magnumpi",
-        "url": "https://gitlab.com/magnumpi/magnumpi",
-        "rel": "/software/repository/gitlab/magnumpi/magnumpi",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/8913469/Tom_20Selleck_20as_20Thomas_20Magnum_20P.I._large.jpg",
-        "description": "Potential Integrator",
-        "topics": []
-    },
-    {
-        "uid": "gitlab/ags-data-format-wg/ags-python-library",
-        "url": "https://gitlab.com/ags-data-format-wg/ags-python-library",
-        "rel": "/software/repository/gitlab/ags-data-format-wg/ags-python-library",
-        "avatar": "https://gitlab.comNone",
-        "description": "A library to read and write AGS files using Pandas DataFrames",
-        "topics": []
-    },
-    {
-        "uid": "gitlab/treangenlab/emu",
-        "url": "https://gitlab.com/treangenlab/emu",
-        "rel": "/software/repository/gitlab/treangenlab/emu",
-        "avatar": "https://gitlab.com/treangenlab/emu/-/avatar",
-        "description": "EMu is a relative abundance estimator for 16S genomic sequences",
-        "topics": []
-    },
-    {
-        "uid": "gitlab/treangenlab/vulcan",
-        "url": "https://gitlab.com/treangenlab/vulcan",
-        "rel": "/software/repository/gitlab/treangenlab/vulcan",
-        "avatar": "https://gitlab.comNone",
-        "description": "",
-        "topics": []
-    },
-    {
-        "uid": "gitlab/jerrytheo16/exoplanet",
-        "url": "https://gitlab.com/jerrytheo16/exoplanet",
-        "rel": "/software/repository/gitlab/jerrytheo16/exoplanet",
-        "avatar": "https://gitlab.comNone",
-        "description": "Desktop-based application to aid in constructing a machine learning model for predictive analysis. The application further allows the model to be evaluated through statistical results and interactive graphs.",
-        "topics": []
-    },
-    {
-        "uid": "gitlab/jesseds/apav",
-        "url": "https://gitlab.com/jesseds/apav",
-        "rel": "/software/repository/gitlab/jesseds/apav",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/10414782/g39334.png",
-        "description": "APAV (Atom Probe Analysis and Visualization) is a Python library for the analysis and\r\nvisualization of atom probe tomography experiments.",
+        "uid": "github/nanoporetech/dorado",
+        "url": "https://github.com/nanoporetech/dorado",
+        "rel": "/software/repository/github/nanoporetech/dorado",
+        "avatar": "https://avatars.githubusercontent.com/u/7668184?v=4",
+        "description": "Oxford Nanopore's Basecaller",
         "topics": [
-            "Atom Probe",
-            "Field Evaporation",
-            "data analysis",
-            "science",
-            "tomography"
+            "basecalling",
+            "libtorch",
+            "nanopore",
+            "genomics"
         ]
     },
     {
-        "uid": "gitlab/programgreg/tagginglatencyestimator",
-        "url": "https://gitlab.com/programgreg/tagginglatencyestimator",
-        "rel": "/software/repository/gitlab/programgreg/tagginglatencyestimator",
-        "avatar": "https://gitlab.comNone",
-        "description": "Software to estimate the latency of the tagging process.",
-        "topics": []
+        "uid": "github/nanoporetech/pychopper",
+        "url": "https://github.com/nanoporetech/pychopper",
+        "rel": "/software/repository/github/nanoporetech/pychopper",
+        "avatar": "https://avatars.githubusercontent.com/u/7668184?v=4",
+        "description": "A tool to identify, orient, trim and rescue full length cDNA reads",
+        "topics": [
+            "rna-seq",
+            "cdna",
+            "transcriptomics",
+            "nanopore",
+            "full-length"
+        ]
     },
     {
-        "uid": "gitlab/ztzou/phydl",
-        "url": "https://gitlab.com/ztzou/phydl",
-        "rel": "/software/repository/gitlab/ztzou/phydl",
-        "avatar": "https://gitlab.comNone",
-        "description": "Phylogenetics by Deep Learning. A residual neural network for inference of quartet phylogenetic tree topology.",
-        "topics": []
+        "uid": "github/nanoporetech/megalodon",
+        "url": "https://github.com/nanoporetech/megalodon",
+        "rel": "/software/repository/github/nanoporetech/megalodon",
+        "avatar": "https://avatars.githubusercontent.com/u/7668184?v=4",
+        "description": " Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.",
+        "topics": [
+            "basecalling",
+            "epigenetics",
+            "variant-calling",
+            "guppy"
+        ]
     },
     {
-        "uid": "gitlab/rki_bioinformatics/HiLive2",
-        "url": "https://gitlab.com/rki_bioinformatics/HiLive2",
-        "rel": "/software/repository/gitlab/rki_bioinformatics/HiLive2",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/7428486/hilive2_logo.png",
-        "description": "HiLive2 is a read mapping tool that maps Illumina HiSeq (or comparable) reads right in the moment when they are produced. Please create issues for HiLive2 at https://gitlab.com/lokat/HiLive2.",
+        "uid": "github/nanoporetech/qcat",
+        "url": "https://github.com/nanoporetech/qcat",
+        "rel": "/software/repository/github/nanoporetech/qcat",
+        "avatar": "https://avatars.githubusercontent.com/u/7668184?v=4",
+        "description": " qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.",
         "topics": []
     },
     {
-        "uid": "gitlab/rki_bioinformatics/purple",
-        "url": "https://gitlab.com/rki_bioinformatics/purple",
-        "rel": "/software/repository/gitlab/rki_bioinformatics/purple",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/11392663/Purple_128.png",
-        "description": "Picking Unique Relevant Peptides for viraL Experiments\r\n\r\nAuthors: Johanna Lechner [@LechnerJ], Pauline Hiortand Felix Hartkopf [@HartkopfF]\r\n\r\nSupport: https://gitlab.com/HartkopfF/Purple\r\n\r\nDownload: https://gitlab.com/HartkopfF/Purple/releases",
+        "uid": "github/nanoporetech/index.html#",
+        "url": null,
+        "rel": "/software/repository/github/nanoporetech/index.html#",
+        "avatar": "",
+        "description": "a suite of tools primarily for the identification of modified nucleotides from nanopore sequencing data.",
         "topics": []
     },
     {
-        "uid": "gitlab/rki_bioinformatics/IDeFIX",
-        "url": "https://gitlab.com/rki_bioinformatics/IDeFIX",
-        "rel": "/software/repository/gitlab/rki_bioinformatics/IDeFIX",
-        "avatar": "https://gitlab.comNone",
-        "description": "Index checking for improved demultiplexing of NGS data",
-        "topics": []
+        "uid": "github/nanoporetech/tombo",
+        "url": "https://github.com/nanoporetech/tombo",
+        "rel": "/software/repository/github/nanoporetech/tombo",
+        "avatar": "https://avatars.githubusercontent.com/u/7668184?v=4",
+        "description": "Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data. ",
+        "topics": [
+            "epigenetics"
+        ]
     },
     {
-        "uid": "gitlab/vincent-sater/umigen",
-        "url": "https://gitlab.com/vincent-sater/umigen",
-        "rel": "/software/repository/gitlab/vincent-sater/umigen",
-        "avatar": "https://gitlab.comNone",
-        "description": "UMI-based reads simulator for variant calling evaluation in paired-end sequencing NGS libraries",
+        "uid": "github/Rnazx/Scaling-Relations",
+        "url": "https://github.com/Rnazx/Scaling-Relations",
+        "rel": "/software/repository/github/Rnazx/Scaling-Relations",
+        "avatar": "https://avatars.githubusercontent.com/u/42196798?v=4",
+        "description": "Python code to find the scaling relations for the galactic magnetic fields in terms of observables.",
         "topics": []
     },
     {
-        "uid": "gitlab/octopus-code/octopus",
-        "url": "https://gitlab.com/octopus-code/octopus",
-        "rel": "/software/repository/gitlab/octopus-code/octopus",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/2018405/octopus.png",
-        "description": "Real-space Time-Dependent Density Functional Theory code",
-        "topics": []
+        "uid": "github/srdc/onfhir",
+        "url": "https://github.com/srdc/onfhir",
+        "rel": "/software/repository/github/srdc/onfhir",
+        "avatar": "https://avatars.githubusercontent.com/u/4221663?v=4",
+        "description": "HL7 FHIR Based Secure Data Repository",
+        "topics": [
+            "fhir-server",
+            "hl7",
+            "fhir",
+            "health-informatics",
+            "mhealth",
+            "scala",
+            "java"
+        ]
     },
     {
-        "uid": "gitlab/gpagano/lensinggw",
-        "url": "https://gitlab.com/gpagano/lensinggw",
-        "rel": "/software/repository/gitlab/gpagano/lensinggw",
-        "avatar": "https://gitlab.comNone",
-        "description": null,
+        "uid": "github/python-streamz/streamz",
+        "url": "https://github.com/python-streamz/streamz",
+        "rel": "/software/repository/github/python-streamz/streamz",
+        "avatar": "https://avatars.githubusercontent.com/u/49496449?v=4",
+        "description": "Real-time stream processing for python",
         "topics": [
-            "lensing of gravitational waves"
+            "streaming-data",
+            "python",
+            "async",
+            "real-time"
         ]
     },
     {
-        "uid": "gitlab/pythia-uq/pythia",
-        "url": "https://gitlab.com/pythia-uq/pythia",
-        "rel": "/software/repository/gitlab/pythia-uq/pythia",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/45854627/logo_small.png",
-        "description": "PyThia Uncertainty Quantification Toolbox",
-        "topics": []
+        "uid": "github/MikeSWang/Harmonia",
+        "url": "https://github.com/MikeSWang/Harmonia",
+        "rel": "/software/repository/github/MikeSWang/Harmonia",
+        "avatar": "https://avatars.githubusercontent.com/u/32841762?v=4",
+        "description": "Hybrid-basis inference for large-scale galaxy clustering",
+        "topics": [
+            "galaxy-clustering",
+            "cosmological-inference",
+            "large-scale-structure-cosmology"
+        ]
     },
     {
-        "uid": "gitlab/eleonoraalei/exo-mercat-gui",
-        "url": "https://gitlab.com/eleonoraalei/exo-mercat-gui",
-        "rel": "/software/repository/gitlab/eleonoraalei/exo-mercat-gui",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/12601405/Untitled-1.png",
-        "description": "The Graphical User Interface of Exo-MerCat.",
-        "topics": []
+        "uid": "github/MikeSWang/Triumvirate",
+        "url": "https://github.com/MikeSWang/Triumvirate",
+        "rel": "/software/repository/github/MikeSWang/Triumvirate",
+        "avatar": "https://avatars.githubusercontent.com/u/32841762?v=4",
+        "description": "A Python/C++ package for three-point clustering measurements in LSS analyses",
+        "topics": [
+            "python",
+            "cpp",
+            "cosmology",
+            "cython"
+        ]
     },
     {
-        "uid": "gitlab/astron-idg/idg",
-        "url": "https://gitlab.com/astron-idg/idg",
-        "rel": "/software/repository/gitlab/astron-idg/idg",
-        "avatar": "https://gitlab.comNone",
-        "description": "Mirror of git.astron.nl/rd/idg",
-        "topics": []
+        "uid": "github/MikeSWang/HorizonGRound",
+        "url": "https://github.com/MikeSWang/HorizonGRound",
+        "rel": "/software/repository/github/MikeSWang/HorizonGRound",
+        "avatar": "https://avatars.githubusercontent.com/u/32841762?v=4",
+        "description": "Relativistic effects in ultra-large-scale galaxy clustering",
+        "topics": [
+            "large-scale-structure-cosmology",
+            "galaxy-clustering",
+            "cosmological-parameters",
+            "relativistic-effects"
+        ]
     },
     {
-        "uid": "gitlab/burstcube/mhealpy",
-        "url": "https://gitlab.com/burstcube/mhealpy",
-        "rel": "/software/repository/gitlab/burstcube/mhealpy",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/21249835/Screen_Shot_2020-09-20_at_3.59.09_PM.png",
-        "description": null,
+        "uid": "github/ester-project/ester",
+        "url": "https://github.com/ester-project/ester",
+        "rel": "/software/repository/github/ester-project/ester",
+        "avatar": "https://avatars.githubusercontent.com/u/9047981?v=4",
+        "description": "Evolution STEllaire en Rotation.",
         "topics": []
     },
     {
-        "uid": "gitlab/sigcorr/sigcorr",
-        "url": "https://gitlab.com/sigcorr/sigcorr",
-        "rel": "/software/repository/gitlab/sigcorr/sigcorr",
-        "avatar": "https://gitlab.comNone",
-        "description": null,
-        "topics": []
+        "uid": "github/peterk87/sistr_cmd",
+        "url": "https://github.com/phac-nml/sistr_cmd",
+        "rel": "/software/repository/github/peterk87/sistr_cmd",
+        "avatar": "https://avatars.githubusercontent.com/u/15620262?v=4",
+        "description": "SISTR (Salmonella In Silico Typing Resource) command-line tool",
+        "topics": [
+            "bioinformatics",
+            "serotyping",
+            "salmonella",
+            "cgmlst",
+            "sistr"
+        ]
     },
     {
-        "uid": "gitlab/permafrostnet/teaspoon",
-        "url": "https://gitlab.com/permafrostnet/teaspoon",
-        "rel": "/software/repository/gitlab/permafrostnet/teaspoon",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/35916406/teaspooncolor_p.png",
-        "description": "Python for permafrost temperature data",
+        "uid": "github/a-griffiths/AutoSpec",
+        "url": "https://github.com/a-griffiths/AutoSpec",
+        "rel": "/software/repository/github/a-griffiths/AutoSpec",
+        "avatar": "https://avatars.githubusercontent.com/u/26306805?v=4",
+        "description": "Fast Automated Spectral Extraction Software for IFU Datacubes",
         "topics": [
-            "dataset",
-            "earth science",
-            "geography"
+            "cross-correlation",
+            "spectra",
+            "datacube",
+            "astronomy",
+            "muse",
+            "automated",
+            "ifu"
         ]
     },
     {
-        "uid": "gitlab/wpettersson/kep_solver",
-        "url": "https://gitlab.com/wpettersson/kep_solver",
-        "rel": "/software/repository/gitlab/wpettersson/kep_solver",
-        "avatar": "https://gitlab.comNone",
-        "description": "A Python package for reading and solving single instances of kidney exchange problems. ",
+        "uid": "github/mbaes/SpheCow",
+        "url": "https://github.com/mbaes/SpheCow",
+        "rel": "/software/repository/github/mbaes/SpheCow",
+        "avatar": "https://avatars.githubusercontent.com/u/8056588?v=4",
+        "description": "Flexible dynamical models for galaxies and dark matter haloes ",
         "topics": []
     },
     {
-        "uid": "gitlab/pipe3d/pyPipe3D",
-        "url": "https://gitlab.com/pipe3d/pyPipe3D",
-        "rel": "/software/repository/gitlab/pipe3d/pyPipe3D",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/26080505/pyPipe3D_colorido_avatar.png",
-        "description": "pyPipe3D is a spectroscopy analysis pipeline which produces coherent, easy to distribute and compare, parameters of the stellar populations and the ionized gas, suited in particular for data from the most recent optical IFS surveys.",
+        "uid": "github/SDTC-CPMed/scDrugPrio",
+        "url": "https://github.com/SDTC-CPMed/scDrugPrio",
+        "rel": "/software/repository/github/SDTC-CPMed/scDrugPrio",
+        "avatar": "https://avatars.githubusercontent.com/u/61544709?v=4",
+        "description": "Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease",
         "topics": [
-            "ifs",
-            "ionized gas",
-            "ism",
-            "spectroscopy",
-            "stellar population synthesis",
-            "techniques"
+            "single-cell"
         ]
     },
     {
-        "uid": "gitlab/dglaeser/fieldcompare",
-        "url": "https://gitlab.com/dglaeser/fieldcompare",
-        "rel": "/software/repository/gitlab/dglaeser/fieldcompare",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/32838547/fcompare_logo.png",
-        "description": "Python package with command-line interface to compare field data",
-        "topics": []
-    },
-    {
-        "uid": "gitlab/vda-lab/snowflake",
-        "url": "https://gitlab.com/vda-lab/snowflake",
-        "rel": "/software/repository/gitlab/vda-lab/snowflake",
-        "avatar": "https://gitlab.comNone",
-        "description": null,
+        "uid": "github/inonchiu/ComEst",
+        "url": "https://github.com/inonchiu/ComEst",
+        "rel": "/software/repository/github/inonchiu/ComEst",
+        "avatar": "https://avatars.githubusercontent.com/u/5868298?v=4",
+        "description": "ComEst - a completeness estimator",
         "topics": []
     },
     {
-        "uid": "gitlab/MartinBeseda/sa-oo-vqe-qiskit",
-        "url": "https://gitlab.com/MartinBeseda/sa-oo-vqe-qiskit",
-        "rel": "/software/repository/gitlab/MartinBeseda/sa-oo-vqe-qiskit",
-        "avatar": "https://gitlab.comNone",
-        "description": "Qiskit version of SA-OO-VQE",
+        "uid": "github/gbernstein/gbdes",
+        "url": "https://github.com/gbernstein/gbdes",
+        "rel": "/software/repository/github/gbernstein/gbdes",
+        "avatar": "https://avatars.githubusercontent.com/u/1461152?v=4",
+        "description": "Gary's DES instrumental signature removal / fitting programs",
         "topics": []
     },
     {
-        "uid": "gitlab/kmrajwade/iqrm_apollo",
-        "url": "https://gitlab.com/kmrajwade/iqrm_apollo",
-        "rel": "/software/repository/gitlab/kmrajwade/iqrm_apollo",
-        "avatar": "https://gitlab.comNone",
-        "description": "A standalone code to clean narrow-band RFI using Inter-Quartile Range Mitigation (IQRM) algorithm. The code works on SIGPROC format data and outputs a cleaned SIGRPOC format file. The output file is compatible with other standard pulsar software.",
+        "uid": "github/gbernstein/pixmappy",
+        "url": "https://github.com/gbernstein/pixmappy",
+        "rel": "/software/repository/github/gbernstein/pixmappy",
+        "avatar": "https://avatars.githubusercontent.com/u/1461152?v=4",
+        "description": "Python interface to gbdes pixel map (astrometry) solutions",
         "topics": []
     },
     {
-        "uid": "gitlab/ffaucher/hawen",
-        "url": "https://gitlab.com/ffaucher/hawen",
-        "rel": "/software/repository/gitlab/ffaucher/hawen",
-        "avatar": "https://gitlab.comNone",
-        "description": "time-HArmonic Wave modEling and INversion using Hybridizable Discontinuous Galerkin Discretization (hawen). The code is written in Fortran90, for forward and inverse time-harmonic wave problems. It uses mpi and openmp parallelism.",
+        "uid": "github/remingtonsexton/BADASS3",
+        "url": "https://github.com/remingtonsexton/BADASS3",
+        "rel": "/software/repository/github/remingtonsexton/BADASS3",
+        "avatar": "https://avatars.githubusercontent.com/u/25069504?v=4",
+        "description": "Bayesian AGN Decomposition Analysis for SDSS Spectra",
         "topics": []
     },
     {
-        "uid": "gitlab/dsbowen/conditional-inference",
-        "url": "https://gitlab.com/dsbowen/conditional-inference",
-        "rel": "/software/repository/gitlab/dsbowen/conditional-inference",
-        "avatar": "https://gitlab.comNone",
-        "description": null,
+        "uid": "github/SolavLab/DuoDIC",
+        "url": "https://github.com/SolavLab/DuoDIC",
+        "rel": "/software/repository/github/SolavLab/DuoDIC",
+        "avatar": "https://avatars.githubusercontent.com/u/95631074?v=4",
+        "description": "Stereo 3D Digital Image Correlation (3D-DIC) MATLAB toolbox",
         "topics": []
     },
     {
-        "uid": "gitlab/bu_cnio/vulcanspot",
-        "url": "https://gitlab.com/bu_cnio/vulcanspot",
-        "rel": "/software/repository/gitlab/bu_cnio/vulcanspot",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/12800427/logo.png",
-        "description": "",
+        "uid": "github/mwoodbri/MRIdb",
+        "url": "https://github.com/mwoodbri/MRIdb",
+        "rel": "/software/repository/github/mwoodbri/MRIdb",
+        "avatar": "https://avatars.githubusercontent.com/u/1724545?v=4",
+        "description": "An end-to-end data management system for MRI",
         "topics": []
     },
     {
-        "uid": "gitlab/LouisLab/PiVR",
-        "url": "https://gitlab.com/LouisLab/pivr",
-        "rel": "/software/repository/gitlab/LouisLab/PiVR",
-        "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/9212004/PiVR_logo.png",
-        "description": "PiVR has been developed to track a variety of animals in real time and present them with light stimuli. Manual can be found at www.PiVR.org, scientific publication at  https://doi.org/10.1371/journal.pbio.3000712\r\n",
+        "uid": "github/ckay314/OSPREI",
+        "url": "https://github.com/ckay314/OSPREI",
+        "rel": "/software/repository/github/ckay314/OSPREI",
+        "avatar": "https://avatars.githubusercontent.com/u/32773545?v=4",
+        "description": "Fully coupled system of ForeCAT-based models",
         "topics": []
     },
     {
-        "uid": "gitlab/geekysquirrel/bigx",
-        "url": "https://gitlab.com/geekysquirrel/bigx",
-        "rel": "/software/repository/gitlab/geekysquirrel/bigx",
-        "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/10925765/bigx.png",
-        "description": "A data visualisation tool for geographic datasets",
+        "uid": "github/arcaldwell49/SimplyAgree",
+        "url": "https://github.com/arcaldwell49/SimplyAgree",
+        "rel": "/software/repository/github/arcaldwell49/SimplyAgree",
+        "avatar": "https://avatars.githubusercontent.com/u/24322628?v=4",
+        "description": "A simple R package for calculating absolute agreement and estimating required sample sizes for studies of absolute agreement",
         "topics": []
     },
     {
-        "uid": "gitlab/chaver/choco-mining",
-        "url": "https://gitlab.com/chaver/choco-mining",
-        "rel": "/software/repository/gitlab/chaver/choco-mining",
-        "avatar": "https://gitlab.comNone",
-        "description": "Data mining with Choco solver",
-        "topics": [
-            "Association Rules Mining",
-            "Choco solver",
-            "Constraint Programming",
-            "Pareto",
-            "Skypattern",
-            "data mining",
-            "pattern mining"
-        ]
-    },
-    {
-        "uid": "gitlab/mbiagetti/persistent_homology_lss",
-        "url": "https://gitlab.com/mbiagetti/persistent_homology_lss",
-        "rel": "/software/repository/gitlab/mbiagetti/persistent_homology_lss",
-        "avatar": "https://gitlab.comNone",
-        "description": "Analyze halo catalogs using persistent homology to constrain cosmological parameters",
+        "uid": "github/cnes/EleFits",
+        "url": "https://github.com/CNES/EleFits",
+        "rel": "/software/repository/github/cnes/EleFits",
+        "avatar": "https://avatars.githubusercontent.com/u/30655936?v=4",
+        "description": "A modern C++ API on top of CFitsIO",
         "topics": [
-            "Dark Matter Halos",
-            "Galaxy Surveys",
-            "Nbody Simulations",
-            "Persistent Homology",
-            "Primordial non-Gaussianity",
-            "Topological Data Analysis",
-            "cosmology"
+            "actively-maintained",
+            "fits-files",
+            "fitsio",
+            "cpp"
         ]
     },
     {
-        "uid": "gitlab/casi-project/casi-3d",
-        "url": "https://gitlab.com/casi-project/casi-3d",
-        "rel": "/software/repository/gitlab/casi-project/casi-3d",
-        "avatar": "https://gitlab.comNone",
-        "description": null,
-        "topics": []
-    },
-    {
-        "uid": "gitlab/casi-project/casi-2d",
-        "url": "https://gitlab.com/casi-project/casi-2d",
-        "rel": "/software/repository/gitlab/casi-project/casi-2d",
-        "avatar": "https://gitlab.comNone",
-        "description": "Identification of  stellar feedback signatures in simulated molecular clouds using methods from deep learning.",
+        "uid": "github/MP-Gadget/bigfile",
+        "url": "https://github.com/MP-Gadget/bigfile",
+        "rel": "/software/repository/github/MP-Gadget/bigfile",
+        "avatar": "https://avatars.githubusercontent.com/u/38799051?v=4",
+        "description": "A reproducible massively parallel IO library for hierarchical data",
         "topics": []
     },
     {
-        "uid": "gitlab/aceteam.kaist/ACE-Molecule",
-        "url": "https://gitlab.com/aceteam.kaist/ACE-Molecule",
-        "rel": "/software/repository/gitlab/aceteam.kaist/ACE-Molecule",
-        "avatar": "https://gitlab.comNone",
-        "description": "GitLab repository for ACE-Molecule.",
+        "uid": "github/NSAPH-Software/GPCERF",
+        "url": "https://github.com/NSAPH-Software/GPCERF",
+        "rel": "/software/repository/github/NSAPH-Software/GPCERF",
+        "avatar": "https://avatars.githubusercontent.com/u/99349300?v=4",
+        "description": null,
         "topics": []
     },
     {
-        "uid": "gitlab/dalton/dalton",
-        "url": "https://gitlab.com/dalton/dalton",
-        "rel": "/software/repository/gitlab/dalton/dalton",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/4007652/pRZ6xe8j_400x400.jpg",
-        "description": "Public Dalton source code repository.",
+        "uid": "github/NSAPH-Software/CRE",
+        "url": "https://github.com/NSAPH-Software/CRE",
+        "rel": "/software/repository/github/NSAPH-Software/CRE",
+        "avatar": "https://avatars.githubusercontent.com/u/99349300?v=4",
+        "description": "The Causal Rule Ensemble Method",
         "topics": []
     },
     {
-        "uid": "gitlab/metafundev/metafun",
-        "url": "https://gitlab.com/metafundev/metafun",
-        "rel": "/software/repository/gitlab/metafundev/metafun",
-        "avatar": "https://gitlab.comNone",
-        "description": "",
+        "uid": "github/leraman/Hopla",
+        "url": "https://github.com/CenterForMedicalGeneticsGhent/Hopla",
+        "rel": "/software/repository/github/leraman/Hopla",
+        "avatar": "https://avatars.githubusercontent.com/u/39293794?v=4",
+        "description": " Streamlined duo/trio analysis and pedigree haplotyping: from VCF to interactive HTML ",
         "topics": []
     },
     {
-        "uid": "gitlab/pyFBS/pyFBS",
-        "url": "https://gitlab.com/pyFBS/pyFBS",
-        "rel": "/software/repository/gitlab/pyFBS/pyFBS",
-        "avatar": "https://gitlab.comNone",
-        "description": "A Python package for Frequency Based Substructuring and Transfer Path Analysis",
+        "uid": "github/matteobreschi/bajes",
+        "url": "https://github.com/matteobreschi/bajes",
+        "rel": "/software/repository/github/matteobreschi/bajes",
+        "avatar": "https://avatars.githubusercontent.com/u/42244716?v=4",
+        "description": "Bayesian Jenaer software",
         "topics": [
-            "3D Viewer",
-            "FRF synthetisation",
-            "MCK model",
-            "System Equivalent Modal Mixing",
-            "Virtual Point Transformation"
+            "bayesian-inference",
+            "astrophysics",
+            "gravitational-waves",
+            "kilonovae",
+            "multi-messenger",
+            "python",
+            "sampling-methods"
         ]
     },
     {
-        "uid": "gitlab/multigris/mgris",
-        "url": "https://gitlab.com/multigris/mgris",
-        "rel": "/software/repository/gitlab/multigris/mgris",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/34419388/multigris_small.png",
-        "description": "MULTIGRIS (\"mgris\") is a Bayesian multi-dimensional grid search using PyMC to extract the posterior distributions of primary grid parameters and predict unobserved parameters/observables.",
+        "uid": "github/tacazares/SeedMatchR",
+        "url": "https://github.com/tacazares/SeedMatchR",
+        "rel": "/software/repository/github/tacazares/SeedMatchR",
+        "avatar": "https://avatars.githubusercontent.com/u/31480706?v=4",
+        "description": "Off-target analysis of siRNA knock down paired with RNAseq",
         "topics": [
-            "Bayesian statistics",
-            "astrophysics",
-            "grid",
-            "mcmc",
-            "modelling"
+            "deseq2-analysis",
+            "mirna",
+            "rna-seq",
+            "sirna",
+            "transcriptomics"
         ]
     },
     {
-        "uid": "gitlab/joseaher/astroplotlib",
-        "url": "https://gitlab.com/joseaher/astroplotlib",
-        "rel": "/software/repository/gitlab/joseaher/astroplotlib",
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-        "description": null,
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-        "rel": "/software/repository/gitlab/habermann_lab/phasik",
-        "avatar": "https://gitlab.comNone",
-        "description": "Scientific tools for extracting cyclic data via hierarchical clustering",
-        "topics": []
+        "uid": "github/sylabs/singularity",
+        "url": "https://github.com/sylabs/singularity",
+        "rel": "/software/repository/github/sylabs/singularity",
+        "avatar": "https://avatars.githubusercontent.com/u/32401844?v=4",
+        "description": "SingularityCE is the Community Edition of Singularity, an open source container platform designed to be simple, fast, and secure.",
+        "topics": [
+            "containers",
+            "hpc",
+            "linux"
+        ]
     },
     {
-        "uid": "gitlab/davidwoodburn/itrm",
-        "url": "https://gitlab.com/davidwoodburn/itrm",
-        "rel": "/software/repository/gitlab/davidwoodburn/itrm",
-        "avatar": "https://gitlab.comNone",
-        "description": "Interactive Terminal Utilities",
+        "uid": "github/bjmt/universalmotif",
+        "url": "https://github.com/bjmt/universalmotif",
+        "rel": "/software/repository/github/bjmt/universalmotif",
+        "avatar": "https://avatars.githubusercontent.com/u/24674853?v=4",
+        "description": "Motif manipulation functions for R.",
         "topics": [
-            "ascii-art",
-            "interactive",
-            "plotting",
-            "terminal"
+            "r",
+            "motif-analysis",
+            "motif-enrichment-analysis",
+            "sequence-logo"
         ]
     },
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-        "uid": "gitlab/clairedavies/sedbys",
-        "url": "https://gitlab.com/clairedavies/sedbys",
-        "rel": "/software/repository/gitlab/clairedavies/sedbys",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/19428398/sedbys_logo.jpg",
-        "description": "A python-based spectral energy distribution builder for young stars",
-        "topics": []
+        "uid": "github/ProjectPyRhO/PyRhO",
+        "url": "https://github.com/ProjectPyRhO/PyRhO",
+        "rel": "/software/repository/github/ProjectPyRhO/PyRhO",
+        "avatar": "https://avatars.githubusercontent.com/u/16543743?v=4",
+        "description": "A virtual optogenetics laboratory",
+        "topics": [
+            "python",
+            "optogenetics",
+            "opsin",
+            "jupyter-widget",
+            "computational-neuroscience",
+            "neuron",
+            "brian2",
+            "neuroscience",
+            "brain",
+            "brainweb"
+        ]
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-        "url": "https://gitlab.com/jtagusari/hrisk-noisemodelling",
-        "rel": "/software/repository/gitlab/jtagusari/hrisk-noisemodelling",
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-        "rel": "/software/repository/gitlab/andreas.andrusch/paipline",
-        "avatar": "https://gitlab.comNone",
-        "description": "Pipeline for the Automatic Identification of Pathogens",
+        "uid": "github/icecube/TauRunner",
+        "url": "https://github.com/icecube/TauRunner",
+        "rel": "/software/repository/github/icecube/TauRunner",
+        "avatar": "https://avatars.githubusercontent.com/u/74313698?v=4",
+        "description": "Code to propagate tau neutrinos at very high energies",
         "topics": []
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-        "uid": "gitlab/rahmannlab/episegmix",
-        "url": "https://gitlab.com/rahmannlab/episegmix",
-        "rel": "/software/repository/gitlab/rahmannlab/episegmix",
-        "avatar": "https://gitlab.comNone",
-        "description": null,
+        "uid": "github/ExaScience/elprep",
+        "url": "https://github.com/ExaScience/elprep",
+        "rel": "/software/repository/github/ExaScience/elprep",
+        "avatar": "https://avatars.githubusercontent.com/u/5629178?v=4",
+        "description": "a high-performance tool for analyzing .sam/.bam files (up to and including variant calling) in sequencing pipelines.",
         "topics": []
     },
     {
-        "uid": "gitlab/binary_c/binary_c-python",
-        "url": "https://gitlab.com/binary_c/binary_c-python",
-        "rel": "/software/repository/gitlab/binary_c/binary_c-python",
-        "avatar": "https://gitlab.comNone",
-        "description": "Python module to interface with the binary_c stellar population framework.\r\n\r\nThe current stable branch is 1.0.0 which you can find in the [releases/1.0.0/2.2.4 branch](https://gitlab.com/binary_c/binary_c-python/-/tree/releases/1.0.0/2.2.4) which works with [binary_c version 2.2.4](https://gitlab.com/binary_c/binary_c/-/tree/development/2.2.4)",
+        "uid": "github/archaeo-pteryx/PowerSpecCovFFT",
+        "url": "https://github.com/archaeo-pteryx/PowerSpecCovFFT",
+        "rel": "/software/repository/github/archaeo-pteryx/PowerSpecCovFFT",
+        "avatar": "https://avatars.githubusercontent.com/u/16079514?v=4",
+        "description": "FFTLog-based computation of non-Gaussian analytic covariance of galaxy power spectrum multipoles ",
         "topics": []
     },
     {
-        "uid": "gitlab/ProjectRHEA/flowsolverrhea",
-        "url": "https://gitlab.com/ProjectRHEA/flowsolverrhea",
-        "rel": "/software/repository/gitlab/ProjectRHEA/flowsolverrhea",
-        "avatar": "https://gitlab.comNone",
-        "description": "RHEA: an open-source Reproducible and Hybrid-architecture flow solver Engineered for Academia",
+        "uid": "github/mlinderm/npsv",
+        "url": "https://github.com/mlinderm/npsv",
+        "rel": "/software/repository/github/mlinderm/npsv",
+        "avatar": "https://avatars.githubusercontent.com/u/419959?v=4",
+        "description": "Non-parametric structural variant genotyper",
         "topics": []
     },
     {
-        "uid": "gitlab/imoralc/malu-ifs-visualization-tool",
-        "url": "https://gitlab.com/imoralc/malu-ifs-visualization-tool",
-        "rel": "/software/repository/gitlab/imoralc/malu-ifs-visualization-tool",
-        "avatar": "https://gitlab.comNone",
+        "uid": "github/opengenomebrowser/opengenomebrowser",
+        "url": "https://github.com/opengenomebrowser/opengenomebrowser",
+        "rel": "/software/repository/github/opengenomebrowser/opengenomebrowser",
+        "avatar": "https://avatars.githubusercontent.com/u/75793699?v=4",
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         "topics": []
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-        "rel": "/software/repository/gitlab/souvlaki/thalassa",
-        "avatar": "https://gitlab.comNone",
-        "description": null,
+        "uid": "github/captain-exoplanet/misttborn",
+        "url": "https://github.com/captain-exoplanet/misttborn",
+        "rel": "/software/repository/github/captain-exoplanet/misttborn",
+        "avatar": "https://avatars.githubusercontent.com/u/45567063?v=4",
+        "description": "MISTTBORN exoplanet fitting code, and various associated codes",
         "topics": []
     },
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-        "uid": "gitlab/polmag/PORTA",
-        "url": "https://gitlab.com/polmag/PORTA",
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-        "description": "PORTA: A three-dimensional multilevel radiative transfer code for modeling the intensity and polarization of spectral lines with massively parallel computers",
+        "uid": "github/cire-thk/BifacialSimu",
+        "url": "https://github.com/cire-thk/BifacialSimu",
+        "rel": "/software/repository/github/cire-thk/BifacialSimu",
+        "avatar": "https://avatars.githubusercontent.com/u/60656081?v=4",
+        "description": "Simulation of bifacial PV",
         "topics": []
     },
     {
-        "uid": "gitlab/BioimageInformaticsGroup/openphi",
-        "url": "https://gitlab.com/BioimageInformaticsGroup/openphi",
-        "rel": "/software/repository/gitlab/BioimageInformaticsGroup/openphi",
-        "avatar": "https://gitlab.comNone",
-        "description": "Open PatHology Interface - A Python API for accessing iSyntax digital pathology images",
-        "topics": []
-    },
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-        "uid": "gitlab/cosmograil/PyCS3",
-        "url": "https://gitlab.com/cosmograil/PyCS3",
-        "rel": "/software/repository/gitlab/cosmograil/PyCS3",
-        "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/7888463/cover_image_1.png",
-        "description": "PyCS for python 3",
-        "topics": []
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-        "uid": "gitlab/cosmograil/starred",
-        "url": "https://gitlab.com/cosmograil/starred",
-        "rel": "/software/repository/gitlab/cosmograil/starred",
-        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/38194257/starred_main_image.png",
-        "description": "A two-channel deconvolution method with Starlet regularization",
+        "uid": "github/connectomicslab/connectomemapper3",
+        "url": "https://github.com/connectomicslab/connectomemapper3",
+        "rel": "/software/repository/github/connectomicslab/connectomemapper3",
+        "avatar": "https://avatars.githubusercontent.com/u/49934994?v=4",
+        "description": "Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD data, and preprocessed EEG to multi-resolution brain parcellation with corresponding connection matrices.",
         "topics": [
-            "Deconvolution",
-            "astronomy",
-            "psf",
-            "python"
+            "bids",
+            "bidsapp",
+            "dmri",
+            "fmri",
+            "connectome",
+            "bids-apps",
+            "pipelines",
+            "chuv",
+            "brain",
+            "parcellation",
+            "python",
+            "eeg"
         ]
     },
     {
-        "uid": "gitlab/loic.cg.rossi/pymiedap",
-        "url": "https://gitlab.com/loic.cg.rossi/pymiedap",
-        "rel": "/software/repository/gitlab/loic.cg.rossi/pymiedap",
-        "avatar": "https://gitlab.comNone",
-        "description": "PyMieDAP = Python Mie Doubling Adding Program. A radiative transfer code with polarization.",
+        "uid": "github/freesurfer/freesurfer",
+        "url": "https://github.com/freesurfer/freesurfer",
+        "rel": "/software/repository/github/freesurfer/freesurfer",
+        "avatar": "https://avatars.githubusercontent.com/u/6330653?v=4",
+        "description": "Neuroimaging analysis and visualization suite",
         "topics": [
-            "astronomy",
-            "atmospheres",
-            "polarization",
-            "radiative transfer"
+            "freesurfer",
+            "neuroimaging",
+            "mri",
+            "lcn"
         ]
     },
     {
-        "uid": "gitlab/random-quintessence/random-quintessence",
-        "url": "https://gitlab.com/random-quintessence/random-quintessence",
-        "rel": "/software/repository/gitlab/random-quintessence/random-quintessence",
-        "avatar": "https://gitlab.comNone",
-        "description": null,
+        "uid": "github/PacificBiosciences/pbmm2",
+        "url": "https://github.com/PacificBiosciences/pbmm2",
+        "rel": "/software/repository/github/PacificBiosciences/pbmm2",
+        "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
+        "description": "A minimap2 frontend for PacBio native data formats",
         "topics": []
     },
     {
-        "uid": "github/maxpumperla/hyperas",
-        "url": "https://github.com/maxpumperla/hyperas",
-        "rel": "/software/repository/github/maxpumperla/hyperas",
-        "avatar": "https://avatars.githubusercontent.com/u/3462566?v=4",
-        "description": "Keras + Hyperopt: A very simple wrapper for convenient hyperparameter optimization",
-        "topics": [
-            "hyperopt",
-            "keras",
-            "hyperparameter-optimization"
-        ]
+        "uid": "github/PacificBiosciences/pbcore",
+        "url": "https://github.com/PacificBiosciences/pbcore",
+        "rel": "/software/repository/github/PacificBiosciences/pbcore",
+        "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
+        "description": "A Python library for reading and writing PacBio\u00ae data files",
+        "topics": []
     },
     {
-        "uid": "github/cwieder/py-ssPA",
-        "url": "https://github.com/cwieder/py-ssPA",
-        "rel": "/software/repository/github/cwieder/py-ssPA",
-        "avatar": "https://avatars.githubusercontent.com/u/59842155?v=4",
-        "description": "Single sample pathway analysis tools for omics data",
+        "uid": "github/PacificBiosciences/IsoSeq",
+        "url": "https://github.com/PacificBiosciences/IsoSeq",
+        "rel": "/software/repository/github/PacificBiosciences/IsoSeq",
+        "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
+        "description": "IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads",
         "topics": [
-            "bioinformatics",
-            "identifier-mapping",
-            "pathway-analysis",
-            "pathway-enrichment-analysis",
-            "pathway-databases",
-            "metabolomics",
-            "omics"
+            "pacbio",
+            "rna",
+            "clustering",
+            "polishing",
+            "isoforms",
+            "discovery"
         ]
     },
     {
-        "uid": "github/sanjibs/bmcmc",
-        "url": "https://github.com/sanjibs/bmcmc",
-        "rel": "/software/repository/github/sanjibs/bmcmc",
-        "avatar": "https://avatars.githubusercontent.com/u/1036754?v=4",
-        "description": "MCMC package for Bayesian data analysis",
+        "uid": "github/PacificBiosciences/pbalign",
+        "url": null,
+        "rel": "/software/repository/github/PacificBiosciences/pbalign",
+        "avatar": "",
+        "description": "pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. The output Compare HDF5 file will be compatible with Quiver if --forQuiver option is specified.",
         "topics": []
     },
     {
-        "uid": "github/auckland-cosmo/defrost-mpi",
-        "url": "https://github.com/auckland-cosmo/defrost-mpi",
-        "rel": "/software/repository/github/auckland-cosmo/defrost-mpi",
-        "avatar": "https://avatars.githubusercontent.com/u/40482857?v=4",
-        "description": "MPI version of the defrost code ",
+        "uid": "github/PacificBiosciences/pbcopper",
+        "url": "https://github.com/PacificBiosciences/pbcopper",
+        "rel": "/software/repository/github/PacificBiosciences/pbcopper",
+        "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
+        "description": "Core C++ library for data structures, algorithms, and utilities",
         "topics": []
     },
     {
-        "uid": "github/auckland-cosmo/PyUltraLight",
-        "url": "https://github.com/auckland-cosmo/PyUltraLight",
-        "rel": "/software/repository/github/auckland-cosmo/PyUltraLight",
-        "avatar": "https://avatars.githubusercontent.com/u/40482857?v=4",
-        "description": "Pseudo-spectral Python code to compute ultralight dark matter dynamics.  ",
+        "uid": "github/PacificBiosciences/FALCON",
+        "url": "https://github.com/PacificBiosciences/FALCON",
+        "rel": "/software/repository/github/PacificBiosciences/FALCON",
+        "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
+        "description": "FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries",
         "topics": []
     },
     {
-        "uid": "github/auckland-cosmo/interp-mc",
-        "url": "https://github.com/auckland-cosmo/interp-mc",
-        "rel": "/software/repository/github/auckland-cosmo/interp-mc",
-        "avatar": "https://avatars.githubusercontent.com/u/40482857?v=4",
-        "description": "Archival patch to CosmoMC for \"interp-mc\" paper",
+        "uid": "github/PacificBiosciences/kineticsTools",
+        "url": "https://github.com/PacificBiosciences/kineticsTools",
+        "rel": "/software/repository/github/PacificBiosciences/kineticsTools",
+        "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
+        "description": "Tools for detecting DNA modifications from single molecule, real-time sequencing data",
         "topics": []
     },
     {
-        "uid": "github/mpievolbio-scicomp/cancer_sim",
-        "url": "https://github.com/mpievolbio-scicomp/cancer_sim",
-        "rel": "/software/repository/github/mpievolbio-scicomp/cancer_sim",
-        "avatar": "https://avatars1.githubusercontent.com/u/48993535?v=4",
-        "description": "CancerSim: A python3 package for stochastic cancer simulation in 2D.",
+        "uid": "github/PacificBiosciences/minorseq",
+        "url": "https://github.com/PacificBiosciences/minorseq",
+        "rel": "/software/repository/github/PacificBiosciences/minorseq",
+        "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
+        "description": "Minor Variant Calling and Phasing Tools",
         "topics": [
-            "cancer",
-            "stochastic",
-            "tumours",
-            "mutation-profiles",
-            "division",
-            "simulation",
-            "sampling"
+            "minor-variant",
+            "haplotypes",
+            "phasing",
+            "drug-resistance",
+            "statistics",
+            "next-generation-sequencing",
+            "long-read",
+            "pacbio"
         ]
     },
     {
-        "uid": "github/tkonolige/city2ba",
-        "url": "https://github.com/tkonolige/city2ba",
-        "rel": "/software/repository/github/tkonolige/city2ba",
-        "avatar": "https://avatars.githubusercontent.com/u/1501680?v=4",
-        "description": "Tools for generating synthetic bundle adjustment datasets",
+        "uid": "github/PacificBiosciences/HiPhase",
+        "url": "https://github.com/PacificBiosciences/HiPhase",
+        "rel": "/software/repository/github/PacificBiosciences/HiPhase",
+        "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
+        "description": "Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads",
         "topics": [
-            "bundle-adjustment"
+            "hifi",
+            "phasing",
+            "structural-variants",
+            "variants",
+            "pacbio-data",
+            "short-tandem-repeats"
         ]
     },
     {
-        "uid": "github/jsobeck/MOOG_SCAT",
-        "url": "https://github.com/jsobeck/MOOG_SCAT",
-        "rel": "/software/repository/github/jsobeck/MOOG_SCAT",
-        "avatar": "https://avatars.githubusercontent.com/u/11219564?v=4",
-        "description": "Repository for the latest version of the MOOG_SCAT code",
+        "uid": "github/PacificBiosciences/pbbioconda",
+        "url": "https://github.com/PacificBiosciences/pbbioconda",
+        "rel": "/software/repository/github/PacificBiosciences/pbbioconda",
+        "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
+        "description": "PacBio Secondary Analysis Tools on Bioconda",
         "topics": []
     },
     {
-        "uid": "github/andresGranadosC/GalRotpy",
-        "url": "https://github.com/andresGranadosC/GalRotpy",
-        "rel": "/software/repository/github/andresGranadosC/GalRotpy",
-        "avatar": "https://avatars.githubusercontent.com/u/24868453?v=4",
-        "description": "A Python-based tool to parametrize the rotation curve and the gravitational potential of disk-like galaxies",
+        "uid": "github/PacificBiosciences/blasr",
+        "url": null,
+        "rel": "/software/repository/github/PacificBiosciences/blasr",
+        "avatar": "",
+        "description": "BLASR (Basic Local Alignment with Successive Refinement) maps Single Molecule Sequencing (SMS) reads that are thousands of bases long, with divergence between the read and genome dominated by insertion and deletion error.",
         "topics": []
     },
     {
-        "uid": "github/pezmaster31/bamtools",
-        "url": "https://github.com/pezmaster31/bamtools",
-        "rel": "/software/repository/github/pezmaster31/bamtools",
-        "avatar": "https://avatars.githubusercontent.com/u/282978?v=4",
-        "description": "C++ API & command-line toolkit for working with BAM data",
+        "uid": "github/PacificBiosciences/pbbam",
+        "url": "https://github.com/PacificBiosciences/pbbam",
+        "rel": "/software/repository/github/PacificBiosciences/pbbam",
+        "avatar": "https://avatars.githubusercontent.com/u/999745?v=4",
+        "description": "PacBio BAM C++ library",
         "topics": []
     },
     {
-        "uid": "github/zhouzilu/DENDRO",
-        "url": "https://github.com/zhouzilu/DENDRO",
-        "rel": "/software/repository/github/zhouzilu/DENDRO",
-        "avatar": "https://avatars.githubusercontent.com/u/26659843?v=4",
-        "description": "Genetic Heterogeneity Profiling by Single Cell RNA Sequencing ",
-        "topics": [
-            "single-cell",
-            "tumor-heterogeneity",
-            "statistics",
-            "computational-biology",
-            "bioinformatics"
-        ]
-    },
-    {
-        "uid": "github/lukapecnik/NiaAML",
-        "url": "https://github.com/lukapecnik/NiaAML",
-        "rel": "/software/repository/github/lukapecnik/NiaAML",
-        "avatar": "https://avatars.githubusercontent.com/u/23029992?v=4",
-        "description": "Python automated machine learning framework.",
-        "topics": [
-            "machine-learning",
-            "automl",
-            "nature-inspired-algorithms",
-            "python",
-            "framework",
-            "classification",
-            "classification-pipelines"
-        ]
+        "uid": "github/Open-ET/flux-data-qaqc",
+        "url": "https://github.com/Open-ET/flux-data-qaqc",
+        "rel": "/software/repository/github/Open-ET/flux-data-qaqc",
+        "avatar": "https://avatars.githubusercontent.com/u/18035656?v=4",
+        "description": "Energy Balance Closure Analysis and Eddy Flux Data Post-Processing",
+        "topics": []
     },
     {
-        "uid": "github/vbaliga/gaussplotR",
-        "url": "https://github.com/vbaliga/gaussplotR",
-        "rel": "/software/repository/github/vbaliga/gaussplotR",
-        "avatar": "https://avatars.githubusercontent.com/u/9795391?v=4",
-        "description": "\ud83d\udd14 Fit, predict, and plot 2D Gaussians in R",
-        "topics": [
-            "gaussian",
-            "r",
-            "rstats",
-            "gaussian-interpolation",
-            "gaussian-plot",
-            "plotting",
-            "gaussian-volume",
-            "2d-gaussian",
-            "gaussian-fit"
-        ]
+        "uid": "github/mischaschirmer/nebular",
+        "url": "https://github.com/mischaschirmer/nebular",
+        "rel": "/software/repository/github/mischaschirmer/nebular",
+        "avatar": "https://avatars.githubusercontent.com/u/12635693?v=4",
+        "description": "NEBULAR is a lightweight software to synthesize the astrophysical spectrum of a hydrogen helium gas mix in collisional ionization equilibrium. It is written in C++ and depends on the GNU Scientific Library (GSL).",
+        "topics": []
     },
     {
-        "uid": "github/blackrim/phyutility",
-        "url": "https://github.com/blackrim/phyutility",
-        "rel": "/software/repository/github/blackrim/phyutility",
-        "avatar": "https://avatars.githubusercontent.com/u/160553?v=4",
-        "description": "simple analyses or modifications on both phylogenetic trees and data matrices",
+        "uid": "github/scipy/scipy",
+        "url": "https://github.com/scipy/scipy",
+        "rel": "/software/repository/github/scipy/scipy",
+        "avatar": "https://avatars2.githubusercontent.com/u/288277?v=4",
+        "description": "Scipy library main repository",
         "topics": []
     },
     {
-        "uid": "github/astrogilda/mirkwood",
-        "url": "https://github.com/astrogilda/mirkwood",
-        "rel": "/software/repository/github/astrogilda/mirkwood",
-        "avatar": "https://avatars.githubusercontent.com/u/23521054?v=4",
+        "uid": "github/CSUBioGroup/GraphLncLoc",
+        "url": "https://github.com/CSUBioGroup/GraphLncLoc",
+        "rel": "/software/repository/github/CSUBioGroup/GraphLncLoc",
+        "avatar": "https://avatars.githubusercontent.com/u/52996140?v=4",
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         "topics": []
     },
     {
-        "uid": "github/mudit-jain90/i-SPin",
-        "url": "https://github.com/mudit-jain90/i-SPin",
-        "rel": "/software/repository/github/mudit-jain90/i-SPin",
-        "avatar": "https://avatars.githubusercontent.com/u/84209375?v=4",
-        "description": "A code to simulate multi-component Schrodinger systems (with/without gravity + with/without self interactions) obeying SO(n) symmetry",
+        "uid": "github/CadenArmstrong/simuTrans",
+        "url": "https://github.com/CadenArmstrong/simuTrans",
+        "rel": "/software/repository/github/CadenArmstrong/simuTrans",
+        "avatar": "https://avatars.githubusercontent.com/u/3118402?v=4",
+        "description": "Exoplanet transit simulator.",
         "topics": []
     },
     {
-        "uid": "github/QuantEcon/QuantEcon.py",
-        "url": "https://github.com/QuantEcon/QuantEcon.py",
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-        "avatar": "https://avatars1.githubusercontent.com/u/8703060?v=4",
-        "description": "A community based Python library for quantitative economics",
+        "uid": "github/era-urban/wrfpy",
+        "url": "https://github.com/ERA-URBAN/wrfpy",
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-        "description": "Bayesian Cost Effectiveness Analysis. Given the results of a Bayesian model (possibly based on MCMC) in the form of simulations from the posterior distributions of suitable variables of costs and clinical benefits for two or more interventions, produces a health economic evaluation. Compares one of the interventions (the \"reference\") to the others (\"comparators\"). Produces many summary and plots to analyse the results",
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-            "bayesian"
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+        "uid": "github/reality/klarigi",
+        "url": "https://github.com/reality/klarigi",
+        "rel": "/software/repository/github/reality/klarigi",
+        "avatar": "https://avatars.githubusercontent.com/u/223469?v=4",
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         "topics": []
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-        "uid": "github/aarondotter/iso",
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-        "avatar": "https://avatars.githubusercontent.com/u/3239471?v=4",
-        "description": "MESA isochrone code",
+        "uid": "github/indralab/pybiopax",
+        "url": "https://github.com/indralab/pybiopax",
+        "rel": "/software/repository/github/indralab/pybiopax",
+        "avatar": "https://avatars.githubusercontent.com/u/41387246?v=4",
+        "description": "PyBioPAX: A python implementation of the BioPAX object model",
         "topics": [
-            "stars",
-            "evolution",
-            "isochrones"
+            "python",
+            "biopax",
+            "biology",
+            "systems-biology"
         ]
     },
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-        "uid": "github/cabb99/open3spn2",
-        "url": "https://github.com/cabb99/open3spn2",
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-        "description": "An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM",
+        "uid": "github/DeepRank/deeprank",
+        "url": "https://github.com/DeepRank/deeprank",
+        "rel": "/software/repository/github/DeepRank/deeprank",
+        "avatar": "https://avatars.githubusercontent.com/u/31408512?v=4",
+        "description": "Deep learning framework for data mining protein-protein interactions using CNN",
         "topics": [
-            "dna",
-            "forcefield",
-            "openmm"
+            "3d-cnn",
+            "protein-protein-interaction",
+            "docking",
+            "pytorch"
         ]
     },
     {
-        "uid": "github/Clinical-Genomics-Umea/fraggler",
-        "url": "https://github.com/Clinical-Genomics-Umea/fraggler",
-        "rel": "/software/repository/github/Clinical-Genomics-Umea/fraggler",
-        "avatar": "https://avatars.githubusercontent.com/u/98591011?v=4",
-        "description": null,
+        "uid": "github/DeepRank/iScore",
+        "url": "https://github.com/DeepRank/iScore",
+        "rel": "/software/repository/github/DeepRank/iScore",
+        "avatar": "https://avatars1.githubusercontent.com/u/31408512?v=4",
+        "description": "iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines",
         "topics": []
     },
     {
-        "uid": "github/Fermipy/fermipy",
-        "url": "https://github.com/fermiPy/fermipy",
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-        "avatar": "https://avatars.githubusercontent.com/u/10644247?v=4",
-        "description": "Fermi-LAT Python Analysis Framework",
+        "uid": "github/DeepRank/pssmgen",
+        "url": "https://github.com/DeepRank/PSSMGen",
+        "rel": "/software/repository/github/DeepRank/pssmgen",
+        "avatar": "https://avatars1.githubusercontent.com/u/31408512?v=4",
+        "description": "Generates consistent PSSM and/or PDB files for protein-protein complexes",
         "topics": []
     },
     {
-        "uid": "github/VirtualPlanetaryLaboratory/atmos",
-        "url": "https://github.com/VirtualPlanetaryLaboratory/atmos",
-        "rel": "/software/repository/github/VirtualPlanetaryLaboratory/atmos",
-        "avatar": "https://avatars.githubusercontent.com/u/6665798?v=4",
+        "uid": "github/DeepRank/deeprank-core",
+        "url": "https://github.com/DeepRank/deeprank-core",
+        "rel": "/software/repository/github/DeepRank/deeprank-core",
+        "avatar": "https://avatars.githubusercontent.com/u/31408512?v=4",
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         "topics": []
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-        "uid": "github/VirtualPlanetaryLaboratory/vplanet",
-        "url": "https://github.com/VirtualPlanetaryLaboratory/vplanet",
-        "rel": "/software/repository/github/VirtualPlanetaryLaboratory/vplanet",
-        "avatar": "https://avatars.githubusercontent.com/u/6665798?v=4",
-        "description": "The Virtual Planet Simulator",
+        "uid": "github/DeepRank/DeepRank-GNN",
+        "url": "https://github.com/DeepRank/Deeprank-GNN",
+        "rel": "/software/repository/github/DeepRank/DeepRank-GNN",
+        "avatar": "https://avatars.githubusercontent.com/u/31408512?v=4",
+        "description": "Graph Network for protein-protein interface",
         "topics": [
-            "habitability",
-            "n-body-simulator",
-            "galaxies",
-            "geophysics",
-            "orbits",
-            "tides",
-            "binary-stars",
-            "rotation",
-            "atmospheres",
-            "magnetic-fields",
-            "climate",
-            "exoplanets",
-            "stellar",
-            "geochemistry",
-            "atmospheric-escape",
-            "planetary-science",
-            "stellar-astrophysics",
-            "astrobiology"
+            "graph",
+            "protein"
         ]
     },
     {
-        "uid": "github/dwkim78/ASTRiDE",
-        "url": "https://github.com/dwkim78/ASTRiDE",
-        "rel": "/software/repository/github/dwkim78/ASTRiDE",
-        "avatar": "https://avatars.githubusercontent.com/u/7696163?v=4",
-        "description": "AUTOMATED STREAK DETECTION FOR ASTRONOMICAL IMAGES",
-        "topics": []
-    },
-    {
-        "uid": "github/dwkim78/upsilon",
-        "url": "https://github.com/dwkim78/upsilon",
-        "rel": "/software/repository/github/dwkim78/upsilon",
-        "avatar": "https://avatars.githubusercontent.com/u/7696163?v=4",
-        "description": "Automated Classification of Periodic Variable Stars Using Machine Learning",
+        "uid": "github/DeepRank/pdb2sql",
+        "url": "https://github.com/DeepRank/pdb2sql",
+        "rel": "/software/repository/github/DeepRank/pdb2sql",
+        "avatar": "https://avatars1.githubusercontent.com/u/31408512?v=4",
+        "description": "Fast and versatile biomolecular structure PDB file parser using SQL queries",
         "topics": []
     },
     {
-        "uid": "github/dwkim78/pdtrend",
-        "url": "https://github.com/dwkim78/pdtrend",
-        "rel": "/software/repository/github/dwkim78/pdtrend",
-        "avatar": "https://avatars.githubusercontent.com/u/7696163?v=4",
-        "description": "Photometric Detrending Algorithm",
+        "uid": "github/yangyongsan-bio/GREAP",
+        "url": "https://github.com/yangyongsan-bio/GREAP",
+        "rel": "/software/repository/github/yangyongsan-bio/GREAP",
+        "avatar": "https://avatars.githubusercontent.com/u/55840134?v=4",
+        "description": null,
         "topics": []
     },
     {
-        "uid": "github/artis-mcrt/artis",
-        "url": "https://github.com/artis-mcrt/artis",
-        "rel": "/software/repository/github/artis-mcrt/artis",
-        "avatar": "https://avatars.githubusercontent.com/u/80631204?v=4",
-        "description": "3D Monte Carlo radiative transfer code for supernovae",
+        "uid": "github/llrs/experDesign",
+        "url": "https://github.com/llrs/experDesign",
+        "rel": "/software/repository/github/llrs/experDesign",
+        "avatar": "https://avatars.githubusercontent.com/u/6818218?v=4",
+        "description": "Design experiments distributed in several batches",
         "topics": [
-            "monte-carlo"
+            "experiment-design",
+            "batch",
+            "cran"
         ]
     },
     {
-        "uid": "github/TheFischerLab/FLEXR",
-        "url": "https://github.com/TheFischerLab/FLEXR",
-        "rel": "/software/repository/github/TheFischerLab/FLEXR",
-        "avatar": "https://avatars.githubusercontent.com/u/72938392?v=4",
-        "description": "Multi-conformer modeling of crystallographic protein structures",
-        "topics": []
-    },
-    {
-        "uid": "github/vsulis5357/Sonification",
-        "url": "https://github.com/vsulis5357/Sonification",
-        "rel": "/software/repository/github/vsulis5357/Sonification",
-        "avatar": "https://avatars.githubusercontent.com/u/173300234?v=4",
-        "description": null,
-        "topics": []
-    },
-    {
-        "uid": "github/AnitaPetzler/AMOEBA",
-        "url": "https://github.com/AnitaPetzler/AMOEBA",
-        "rel": "/software/repository/github/AnitaPetzler/AMOEBA",
-        "avatar": "https://avatars.githubusercontent.com/u/39294322?v=4",
-        "description": "Automated Molecular Excitation Bayesian line-fitting Algorithm",
-        "topics": []
-    },
-    {
-        "uid": "github/NickSwainston/pulsar_spectra",
-        "url": "https://github.com/NickSwainston/pulsar_spectra",
-        "rel": "/software/repository/github/NickSwainston/pulsar_spectra",
-        "avatar": "https://avatars.githubusercontent.com/u/18390846?v=4",
-        "description": "A simple interface to record pulsar's flux density measurements for a large number of papers and perform fitting of spectral models.",
-        "topics": []
-    },
-    {
-        "uid": "github/darrencroton/sage",
-        "url": "https://github.com/darrencroton/sage",
-        "rel": "/software/repository/github/darrencroton/sage",
-        "avatar": "https://avatars.githubusercontent.com/u/2062219?v=4",
-        "description": "Home of the Semi-Analytic Galaxy Evolution (SAGE) galaxy formation model",
+        "uid": "github/alekseyzimin/ufasta",
+        "url": "https://github.com/alekseyzimin/ufasta",
+        "rel": "/software/repository/github/alekseyzimin/ufasta",
+        "avatar": "https://avatars.githubusercontent.com/u/27226909?v=4",
+        "description": "Utility to manipulate fasta files",
         "topics": []
     },
     {
-        "uid": "github/snfactory/binaryoffset",
-        "url": "https://github.com/snfactory/binaryoffset",
-        "rel": "/software/repository/github/snfactory/binaryoffset",
-        "avatar": "https://avatars.githubusercontent.com/u/10949696?v=4",
-        "description": "Detecting and Correcting the Binary Offset Effect in CCDs",
+        "uid": "github/SophieMLV/axionHMcode",
+        "url": "https://github.com/SophieMLV/axionHMcode",
+        "rel": "/software/repository/github/SophieMLV/axionHMcode",
+        "avatar": "https://avatars.githubusercontent.com/u/79702672?v=4",
+        "description": "A fully expanded halo model to calculate the non-linear power spectrum in a mixed dark matter cosmology with ultra-light axions",
         "topics": []
     },
     {
-        "uid": "github/WorkflowConversion/CTDConverter",
-        "url": "https://github.com/WorkflowConversion/CTDConverter",
-        "rel": "/software/repository/github/WorkflowConversion/CTDConverter",
-        "avatar": "https://avatars.githubusercontent.com/u/12558928?v=4",
-        "description": "Series of python scripts to convert CTD files into other formats such as Galaxy, CWL",
-        "topics": []
+        "uid": "github/minaskar/hankl",
+        "url": "https://github.com/minaskar/hankl",
+        "rel": "/software/repository/github/minaskar/hankl",
+        "avatar": "https://avatars.githubusercontent.com/u/23280751?v=4",
+        "description": "hankl is a lightweight Python implementation of the FFTLog algorithm for Cosmology",
+        "topics": [
+            "hankel",
+            "fftlog",
+            "fft",
+            "cosmology",
+            "numerical-integration"
+        ]
     },
     {
-        "uid": "github/WorkflowConversion/CTDopts",
-        "url": "https://github.com/WorkflowConversion/CTDopts",
-        "rel": "/software/repository/github/WorkflowConversion/CTDopts",
-        "avatar": "https://avatars.githubusercontent.com/u/12558928?v=4",
-        "description": "Gives your command-line tools a CTD-compatible interface",
+        "uid": "github/minaskar/zeus",
+        "url": "https://github.com/minaskar/zeus",
+        "rel": "/software/repository/github/minaskar/zeus",
+        "avatar": "https://avatars.githubusercontent.com/u/23280751?v=4",
+        "description": "\u26a1\ufe0f zeus: Lightning Fast MCMC \u26a1\ufe0f",
         "topics": [
-            "hacktoberfest",
-            "ctd"
+            "mcmc",
+            "mcmc-sampler",
+            "bayesian-inference",
+            "inference",
+            "machine-learning",
+            "sampling",
+            "sampling-methods",
+            "general-purpose",
+            "black-box-bayesian-inference",
+            "probabilistic-data-analysis",
+            "python"
         ]
     },
     {
-        "uid": "github/atmos-cloud-sim-uj/PySDM",
-        "url": "https://github.com/atmos-cloud-sim-uj/PySDM",
-        "rel": "/software/repository/github/atmos-cloud-sim-uj/PySDM",
-        "avatar": "https://avatars.githubusercontent.com/u/48702007?v=4",
-        "description": "Pythonic particle-based (super-droplet) warm-rain/aqueous-chemistry cloud microphysics package with box, parcel & 1D/2D prescribed-flow examples in Python, Julia and Matlab",
+        "uid": "github/minaskar/pocomc",
+        "url": "https://github.com/minaskar/pocomc",
+        "rel": "/software/repository/github/minaskar/pocomc",
+        "avatar": "https://avatars.githubusercontent.com/u/23280751?v=4",
+        "description": "pocoMC: A Python implementation of Preconditioned Monte Carlo for accelerated Bayesian Computation",
         "topics": [
-            "physics-simulation",
-            "monte-carlo-simulation",
-            "gpu-computing",
-            "atmospheric-modelling",
-            "particle-system",
-            "numba",
-            "thrust",
-            "nvrtc",
-            "pint",
-            "atmospheric-physics",
+            "astronomy",
+            "astrophysics",
+            "bayesian-inference",
+            "black-box-bayesian-inference",
+            "cosmology",
+            "cosmology-inference",
+            "general-purpose",
+            "inference",
+            "machine-learning",
+            "mcmc",
+            "mcmc-sampler",
+            "normalizing-flows",
+            "probabilistic-data-analysis",
             "python",
-            "simulation",
-            "gpu",
-            "cuda",
-            "research",
-            "pypi-package"
+            "sampling",
+            "sampling-methods",
+            "smc"
         ]
     },
     {
-        "uid": "github/atmos-cloud-sim-uj/PyMPDATA",
-        "url": "https://github.com/atmos-cloud-sim-uj/PyMPDATA",
-        "rel": "/software/repository/github/atmos-cloud-sim-uj/PyMPDATA",
-        "avatar": "https://avatars.githubusercontent.com/u/48702007?v=4",
-        "description": "Numba-accelerated Pythonic implementation of MPDATA with examples in Python, Julia and Matlab",
+        "uid": "github/ymocquar/HOODESolver.jl",
+        "url": "https://github.com/ymocquar/HOODESolver.jl",
+        "rel": "/software/repository/github/ymocquar/HOODESolver.jl",
+        "avatar": "https://avatars.githubusercontent.com/u/22094571?v=4",
+        "description": "High Oscillatory Ordinary Differential Equation Solver (write in Julia language)",
         "topics": [
-            "pde-solver",
-            "numerical-integration",
-            "advection",
-            "numba",
-            "advection-diffusion",
-            "atmospheric-modelling",
-            "python",
-            "simulation",
-            "research",
-            "pypi-package"
+            "julia",
+            "high-oscillatory",
+            "fft",
+            "ode-solver",
+            "adams-bashforth-methods"
         ]
     },
     {
-        "uid": "github/potree/PotreeConverter",
-        "url": "https://github.com/potree/PotreeConverter",
-        "rel": "/software/repository/github/potree/PotreeConverter",
-        "avatar": "https://avatars2.githubusercontent.com/u/2094934?v=4",
-        "description": "Create multi res point cloud to use with potree",
-        "topics": []
-    },
-    {
-        "uid": "github/arjunsavel/SImMER",
-        "url": "https://github.com/arjunsavel/SImMER",
-        "rel": "/software/repository/github/arjunsavel/SImMER",
-        "avatar": "https://avatars.githubusercontent.com/u/35353555?v=4",
-        "description": "An open-source & modular reduction pipeline for astronomical images of point sources.",
+        "uid": "github/JetBrains-Research/spbla",
+        "url": "https://github.com/JetBrains-Research/spbla",
+        "rel": "/software/repository/github/JetBrains-Research/spbla",
+        "avatar": "https://avatars.githubusercontent.com/u/10167268?v=4",
+        "description": "Sparse Boolean linear algebra for Nvidia Cuda, OpenCL and CPU computations",
         "topics": [
-            "astronomy",
-            "astrophysics",
+            "cplusplus",
+            "sparse-matrix",
+            "boolean-algebra",
+            "cuda",
+            "opencl",
+            "graphblas",
+            "suitesparse",
             "python",
-            "astronomical-images",
-            "stars"
+            "graph-algorithms"
         ]
     },
     {
-        "uid": "github/arjunsavel/cortecs",
-        "url": "https://github.com/arjunsavel/cortecs",
-        "rel": "/software/repository/github/arjunsavel/cortecs",
-        "avatar": "https://avatars.githubusercontent.com/u/35353555?v=4",
-        "description": "Compressed representations of opacity for radiative transfer!",
+        "uid": "github/alan-turing-institute/Palaeoanalytics",
+        "url": "https://github.com/alan-turing-institute/Palaeoanalytics",
+        "rel": "/software/repository/github/alan-turing-institute/Palaeoanalytics",
+        "avatar": "https://avatars.githubusercontent.com/u/18304793?v=4",
+        "description": "Repository for the Paleoanalytics project.",
         "topics": [
-            "astronomy",
-            "atmospheres",
-            "exoplanets",
-            "radiative-transfer"
+            "hut23",
+            "hut23-530"
         ]
     },
     {
-        "uid": "github/facom/BHMcalc",
-        "url": "https://github.com/facom/BHMcalc",
-        "rel": "/software/repository/github/facom/BHMcalc",
-        "avatar": "https://avatars.githubusercontent.com/u/1230304?v=4",
-        "description": "Binary Habitability Mechanism - Calculator",
-        "topics": []
+        "uid": "github/alan-turing-institute/setvis",
+        "url": "https://github.com/alan-turing-institute/setvis",
+        "rel": "/software/repository/github/alan-turing-institute/setvis",
+        "avatar": "https://avatars.githubusercontent.com/u/18304793?v=4",
+        "description": "A tool for visualising set membership and patterns of missingness in data",
+        "topics": [
+            "hut23",
+            "hut23-845",
+            "bokeh",
+            "jupyter-notebook",
+            "missing-data",
+            "python",
+            "set-visualization"
+        ]
     },
     {
-        "uid": "github/facom/tidev",
-        "url": "https://github.com/facom/tidev",
-        "rel": "/software/repository/github/facom/tidev",
-        "avatar": "https://avatars.githubusercontent.com/u/1230304?v=4",
-        "description": null,
-        "topics": []
+        "uid": "github/alan-turing-institute/DetectorChecker",
+        "url": "https://github.com/alan-turing-institute/DetectorChecker",
+        "rel": "/software/repository/github/alan-turing-institute/DetectorChecker",
+        "avatar": "https://avatars1.githubusercontent.com/u/18304793?v=4",
+        "description": " Project to develop software to assess developing detector screen damage (Web App based on the original DetectorChecker package)",
+        "topics": [
+            "hut23",
+            "hut23-122"
+        ]
     },
     {
-        "uid": "github/facom/exorings",
-        "url": "https://github.com/facom/exorings",
-        "rel": "/software/repository/github/facom/exorings",
-        "avatar": "https://avatars.githubusercontent.com/u/1230304?v=4",
-        "description": "Code Repository for Exoring Transit Properties",
-        "topics": []
+        "uid": "github/alan-turing-institute/monitoring-ecosystem-resilience",
+        "url": "https://github.com/alan-turing-institute/monitoring-ecosystem-resilience",
+        "rel": "/software/repository/github/alan-turing-institute/monitoring-ecosystem-resilience",
+        "avatar": "https://avatars1.githubusercontent.com/u/18304793?v=4",
+        "description": "Repository for mini-projects in the Data science for Sustainable development project ",
+        "topics": [
+            "hut23",
+            "hut23-240"
+        ]
     },
     {
-        "uid": "github/sfeeney/ddspectra",
-        "url": "https://github.com/sfeeney/ddspectra",
-        "rel": "/software/repository/github/sfeeney/ddspectra",
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-        "description": "SSSpaNG: Stellar Spectra as Sparse Non-Gaussian Processes",
-        "topics": []
+        "uid": "github/alan-turing-institute/MLJ.jl",
+        "url": "https://github.com/alan-turing-institute/MLJ.jl",
+        "rel": "/software/repository/github/alan-turing-institute/MLJ.jl",
+        "avatar": "https://avatars1.githubusercontent.com/u/18304793?v=4",
+        "description": "A Julia machine learning framework",
+        "topics": [
+            "machine-learning",
+            "julia",
+            "pipelines",
+            "tuning",
+            "data-science",
+            "tuning-parameters",
+            "predictive-modeling",
+            "classification",
+            "regression",
+            "statistics",
+            "clustering",
+            "stacking",
+            "ensemble-learning",
+            "pipeline"
+        ]
     },
     {
-        "uid": "github/sfeeney/hh0",
-        "url": "https://github.com/sfeeney/hh0",
-        "rel": "/software/repository/github/sfeeney/hh0",
-        "avatar": "https://avatars.githubusercontent.com/u/7850768?v=4",
-        "description": "Hierarchical Hubble Constant Inference",
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+        "description": "\u26a1\u2660\ufe0f Assemble bacterial isolate genomes from Illumina paired-end reads",
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+        "description": ":mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes",
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+            "virulence-genes",
+            "contigs",
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-        "description": "FIRST Classifier: Compact and Extended Radio Galaxies Classification using Deep Convolutional Neural Networks",
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+        "description": ":microscope: :leo: Bacterial ribosomal RNA predictor",
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+            "hmmer",
+            "rnammer",
+            "hmm-model",
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-        "description": "Gene Ontology subgraph visualizations",
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+        "description": "A hyperparameter optimization framework",
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+            "machine-learning",
+            "parallel",
+            "distributed",
+            "hyperparameter-optimization"
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+        "description": "Prediction of Exoplanet Precisions using Information in Transit Analysis",
         "topics": [
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-            "fitting",
-            "optimization",
-            "c-plus-plus",
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-            "histfactory",
-            "python",
-            "hep",
-            "hep-ex",
-            "scikit-hep",
-            "jax"
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+            "fatigue",
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+        "description": "Python-based Space Physics Environment Data Analysis Software",
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-            "arabic-language",
-            "text-processing"
+            "space-physics",
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+            "heliophysics",
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+            "science-research"
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+        "description": "A set of metabolomics tools for use in Galaxy",
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-            "time-series-analysis"
+            "metabolomics",
+            "galaxy",
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+        "description": "CutePeaks is a standalone Sanger trace viewer steered by a modern and user-friendly UI.",
         "topics": [
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-            "deep-learning",
-            "scrna-seq",
-            "spatial-transcriptomics"
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-        "description": "Load reconstuction using virtual fields",
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+        "description": "a data-driven method for determining stellar parameters and abundances from stellar spectra",
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-        "description": "Tilted-Ring-Fitting-Code",
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+        "avatar": "https://avatars.githubusercontent.com/u/100677905?v=4",
+        "description": "This code creates the stellar activity grid for exoplanets",
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-        "description": "Smooth Effects on Response Penalty for CLM",
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         "topics": [
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-            "brier-scores",
-            "log-loss-score-metric",
-            "misclassification",
-            "logistic-regression",
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+        "description": "A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests on large scale genomic data.",
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+            "1000genomes",
+            "cuda",
+            "cuda-programming",
+            "evolutionary-algorithms",
+            "evolutionary-biology",
+            "evolutionary-computation",
+            "genetic-algorithm",
+            "genetics",
+            "neutrality-test",
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+            "vcf-data",
+            "vcf-files",
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         "topics": []
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-        "description": "Mapping software with pre-loaded global and local maps",
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+        "description": "A-Track: Detecting Moving Objects in FITS images.",
         "topics": [
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-            "maps"
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-        "description": "An R package to prepare, process, and synthesize FAOSTAT data for global agroeconomic and multisector dynamic modeling",
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+        "description": "This repository contains the code used to produce the Tiered Radio Extragalactic Continuum Simulation (T-RECS, Bonaldi et al. 2018)",
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-            "economics",
-            "food-security",
-            "scientific-computing"
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+        "description": "Exoplanet Detection Map Calculator ",
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-        "description": "Amalgamate existing climate data to create monthly climate variable fields.",
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+        "description": "Python interface to C2Ray, with GPU-acceleration",
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-        "rel": "/software/repository/github/ahoward-cf/ppmap",
-        "avatar": "https://avatars.githubusercontent.com/u/29404906?v=4",
-        "description": "Code for column density mapping with extra dimensions (temperature and dust opacity index).",
+        "uid": "github/ReGIS-org/regis-v2",
+        "url": "https://github.com/ReGIS-org/regis-v2",
+        "rel": "/software/repository/github/ReGIS-org/regis-v2",
+        "avatar": "https://avatars3.githubusercontent.com/u/32134501?v=4",
+        "description": "Angular-4 and cesiumjs based.",
         "topics": []
     },
     {
-        "uid": "github/AdrianA-T/cytomorph",
-        "url": "https://github.com/AdrianA-T/cytomorph",
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-        "avatar": "https://avatars.githubusercontent.com/u/40856467?v=4",
-        "description": "Cytomorph is a open software based on the main general features of cytoneme-meditated gradient formation. This sfotware allows to upload different experimental data to study in silico the role of different biological parameters of this type of signaling. Cytomorph can also work as an in silico tester for other biological hypotheses that are difficult to validate experimentally. In addition, the software architecture is designed in different modules that make Cytomorph an adaptive computational tool in which new advances can be integrated.",
+        "uid": "github/seclark/RHT",
+        "url": "https://github.com/seclark/RHT",
+        "rel": "/software/repository/github/seclark/RHT",
+        "avatar": "https://avatars.githubusercontent.com/u/3051331?v=4",
+        "description": "The Rolling Hough Transform",
         "topics": []
     },
     {
-        "uid": "github/pyroll-project/pyroll-core",
-        "url": "https://github.com/pyroll-project/pyroll-core",
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-        "avatar": "https://avatars.githubusercontent.com/u/100946430?v=4",
-        "description": "PyRoll rolling simulation framework - core library.",
+        "uid": "github/nevrome/bleiglas",
+        "url": "https://github.com/nevrome/bleiglas",
+        "rel": "/software/repository/github/nevrome/bleiglas",
+        "avatar": "https://avatars.githubusercontent.com/u/10789038?v=4",
+        "description": "R Package - Spatiotemporal Data Interpolation and Visualisation based on 3D Tessellation",
         "topics": [
-            "groove-rolling",
-            "materials",
-            "metal-forming",
-            "pyroll",
-            "python",
-            "rolling",
-            "simulation"
+            "r",
+            "tessellation",
+            "3d",
+            "voronoi"
         ]
     },
     {
-        "uid": "github/BioGenies/AMPBenchmark",
-        "url": "https://github.com/BioGenies/AMPBenchmark",
-        "rel": "/software/repository/github/BioGenies/AMPBenchmark",
-        "avatar": "https://avatars.githubusercontent.com/u/70942725?v=4",
-        "description": null,
-        "topics": []
+        "uid": "github/miniufo/xinvert",
+        "url": "https://github.com/miniufo/xinvert",
+        "rel": "/software/repository/github/miniufo/xinvert",
+        "avatar": "https://avatars.githubusercontent.com/u/9312831?v=4",
+        "description": "Invert geophysical fluid dynamic problems (elliptic partial differential equations) using SOR iteration method.",
+        "topics": [
+            "successive-over-relaxation",
+            "inversion-problem",
+            "atmospheric-science",
+            "oceanography",
+            "meteorology",
+            "omega-equation",
+            "gill-matsuno-model",
+            "munk-stommel",
+            "wind-driven-circulation",
+            "eliassen-model",
+            "pv-inversion",
+            "streamfunction",
+            "velocity-potential",
+            "geophysical-fluid-dynamics",
+            "poisson-equation"
+        ]
     },
     {
-        "uid": "github/lukaswenzl/Magnification_bias_estimation_in_galaxy_surveys",
-        "url": "https://github.com/lukaswenzl/Magnification_bias_estimation_in_galaxy_surveys",
-        "rel": "/software/repository/github/lukaswenzl/Magnification_bias_estimation_in_galaxy_surveys",
-        "avatar": "https://avatars.githubusercontent.com/u/31296160?v=4",
-        "description": "Code underlying the paper Wenzl, Chen, Bean 2023 https://arxiv.org/abs/2308.05892",
+        "uid": "github/eleniadam/npgreat",
+        "url": "https://github.com/eleniadam/npgreat",
+        "rel": "/software/repository/github/eleniadam/npgreat",
+        "avatar": "https://avatars.githubusercontent.com/u/31490261?v=4",
+        "description": "A hybrid assembly method that utilizes Nanopore and Linked-Reads datasets for the assembly of the human subtelomere regions.",
         "topics": []
     },
     {
-        "uid": "github/arumugamlab/msamtools",
-        "url": "https://github.com/arumugamlab/msamtools",
-        "rel": "/software/repository/github/arumugamlab/msamtools",
-        "avatar": "https://avatars.githubusercontent.com/u/56064268?v=4",
-        "description": "Metagenomics-related extended functionalities to samtools",
+        "uid": "github/EdanRein/pyPplusS",
+        "url": "https://github.com/EdanRein/pyPplusS",
+        "rel": "/software/repository/github/EdanRein/pyPplusS",
+        "avatar": "https://avatars.githubusercontent.com/u/37420656?v=4",
+        "description": "pyPplusS code package for modeling exoplanets with rings",
         "topics": []
     },
     {
-        "uid": "github/saltastro/pyhrs",
-        "url": "https://github.com/saltastro/pyhrs",
-        "rel": "/software/repository/github/saltastro/pyhrs",
-        "avatar": "https://avatars.githubusercontent.com/u/736730?v=4",
-        "description": "Software for reducing observations from the SALT High Resolution Spectrograph",
-        "topics": []
+        "uid": "github/nickk124/RCR",
+        "url": "https://github.com/nickk124/RCR",
+        "rel": "/software/repository/github/nickk124/RCR",
+        "avatar": "https://avatars.githubusercontent.com/u/37184532?v=4",
+        "description": "Robust Chauvenet Rejection: RCR is advanced, but easy to use, outlier rejection.",
+        "topics": [
+            "outlier-rejection",
+            "outlier-detection",
+            "regression",
+            "robust",
+            "robust-statistics"
+        ]
     },
     {
-        "uid": "github/xragua/xraybinaryorbit",
-        "url": "https://github.com/xragua/xraybinaryorbit",
-        "rel": "/software/repository/github/xragua/xraybinaryorbit",
-        "avatar": "https://avatars.githubusercontent.com/u/152065965?v=4",
-        "description": " A Python Package for Analyzing Orbital Modulations in X-ray Binaries",
+        "uid": "github/padster/pyNeuroTrace",
+        "url": "https://github.com/padster/pyNeuroTrace",
+        "rel": "/software/repository/github/padster/pyNeuroTrace",
+        "avatar": "https://avatars.githubusercontent.com/u/848804?v=4",
+        "description": "Python code for processing neural timeseries",
         "topics": [
-            "orbital-mechanics",
-            "x-ray-binaries",
-            "astrophysics"
+            "analytics",
+            "neuroscience",
+            "timeseries"
         ]
     },
     {
-        "uid": "github/cosmodesi/pycorr",
-        "url": "https://github.com/cosmodesi/pycorr",
-        "rel": "/software/repository/github/cosmodesi/pycorr",
-        "avatar": "https://avatars.githubusercontent.com/u/8990486?v=4",
-        "description": "2-pt correlation function estimation",
+        "uid": "github/mroosmalen/nanosv",
+        "url": "https://github.com/mroosmalen/nanosv",
+        "rel": "/software/repository/github/mroosmalen/nanosv",
+        "avatar": "https://avatars.githubusercontent.com/u/7425822?v=4",
+        "description": "SV caller for nanopore data",
         "topics": []
     },
     {
-        "uid": "github/dansarie/sboxgates",
-        "url": "https://github.com/dansarie/sboxgates",
-        "rel": "/software/repository/github/dansarie/sboxgates",
-        "avatar": "https://avatars.githubusercontent.com/u/16786778?v=4",
-        "description": "Program for finding low gate count implementations of S-boxes.",
-        "topics": [
-            "cryptanalysis",
-            "mpi",
-            "logic-circuit",
-            "cuda"
-        ]
+        "uid": "github/mpip/pfft",
+        "url": "https://github.com/mpip/pfft",
+        "rel": "/software/repository/github/mpip/pfft",
+        "avatar": "https://avatars.githubusercontent.com/u/4056386?v=4",
+        "description": "Parallel fast Fourier transforms",
+        "topics": []
     },
     {
-        "uid": "github/mdtanker/polartoolkit",
-        "url": "https://github.com/mdtanker/polartoolkit",
-        "rel": "/software/repository/github/mdtanker/polartoolkit",
-        "avatar": "https://avatars.githubusercontent.com/u/81199856?v=4",
-        "description": "Helpful tools for polar researchers",
+        "uid": "github/hpgem/nanomesh",
+        "url": "https://github.com/hpgem/nanomesh",
+        "rel": "/software/repository/github/hpgem/nanomesh",
+        "avatar": "https://avatars.githubusercontent.com/u/50169972?v=4",
+        "description": "Python workflow tool for generating meshes from 2D and 3D microscopy image data",
         "topics": [
-            "antarctica",
-            "bedmachine",
-            "pygmt",
-            "jupyter-notebook",
-            "bedmap",
-            "plotting",
-            "gmt",
+            "meshing",
+            "microscopy",
             "python",
-            "profiles",
-            "arctic",
-            "cryosphere",
-            "greenland",
-            "polar"
+            "jupyter",
+            "image-processing"
         ]
     },
     {
-        "uid": "github/parsotat/batanalysis",
-        "url": "https://github.com/parsotat/BatAnalysis",
-        "rel": "/software/repository/github/parsotat/batanalysis",
-        "avatar": "https://avatars.githubusercontent.com/u/25468716?v=4",
-        "description": "A python HEASOFT wrapper for processing Swift-BAT data.",
+        "uid": "github/sonny-harman/snowball",
+        "url": "https://github.com/sonny-harman/snowball",
+        "rel": "/software/repository/github/sonny-harman/snowball",
+        "avatar": "https://avatars.githubusercontent.com/u/5854292?v=4",
+        "description": "Generalizable atmospheric mass loss calculator",
         "topics": []
     },
     {
-        "uid": "github/ldliao/jointVIP",
-        "url": "https://github.com/ldliao/jointVIP",
-        "rel": "/software/repository/github/ldliao/jointVIP",
-        "avatar": "https://avatars.githubusercontent.com/u/22989630?v=4",
-        "description": "Prioritize variables in observational study design through the joint variable importance plot; shiny app: https://ldliao.shinyapps.io/jointVIP/",
+        "uid": "github/christiangil/StellarSpectraObservationFitting.jl",
+        "url": "https://github.com/christiangil/StellarSpectraObservationFitting.jl",
+        "rel": "/software/repository/github/christiangil/StellarSpectraObservationFitting.jl",
+        "avatar": "https://avatars.githubusercontent.com/u/32468452?v=4",
+        "description": "Data-driven models for extremely precise radial velocity  (EPRV) spectra",
+        "topics": []
+    },
+    {
+        "uid": "github/desResLab/LINFA",
+        "url": "https://github.com/desResLab/LINFA",
+        "rel": "/software/repository/github/desResLab/LINFA",
+        "avatar": "https://avatars.githubusercontent.com/u/39108751?v=4",
+        "description": "A Python library for variational inference with normalizing flow and annealing",
         "topics": [
-            "causal-inference",
-            "observational-study",
-            "study-design",
-            "rstats",
-            "r"
+            "annealing",
+            "normalizing-flows",
+            "variational-inference",
+            "computational-expensive-models"
         ]
     },
     {
-        "uid": "github/coleygroup/pyscreener",
-        "url": "https://github.com/coleygroup/pyscreener",
-        "rel": "/software/repository/github/coleygroup/pyscreener",
-        "avatar": "https://avatars.githubusercontent.com/u/55363694?v=4",
-        "description": "pythonic interface to virtual screening software",
+        "uid": "github/davemlz/eemont",
+        "url": "https://github.com/davemlz/eemont",
+        "rel": "/software/repository/github/davemlz/eemont",
+        "avatar": "https://avatars.githubusercontent.com/u/49817852?v=4",
+        "description": "A python package that extends Google Earth Engine.",
         "topics": [
-            "virtual-screening",
-            "computational-biology",
-            "molecular-docking",
-            "distributed-computing",
-            "ray"
+            "google-earth-engine",
+            "earth-engine",
+            "google",
+            "remote-sensing",
+            "gis",
+            "geographic-information-systems",
+            "python",
+            "python3",
+            "raster",
+            "satellite-imagery",
+            "satellite-images"
         ]
     },
     {
-        "uid": "github/SihaoCheng/WD_models",
-        "url": "https://github.com/SihaoCheng/WD_models",
-        "rel": "/software/repository/github/SihaoCheng/WD_models",
-        "avatar": "https://avatars.githubusercontent.com/u/35247024?v=4",
-        "description": "I provide a python package for transformations between WD photometry (Gaia, SDSS, WISE, and many more) and physical parameters, based on interpolation of existing atmosphere grid and cooling models. If you use this tool, please cite this website and the corresponding papers of atmosphere grid (synthetic colors) and cooling models. ",
+        "uid": "github/Ciela-Institute/caustics",
+        "url": "https://github.com/Ciela-Institute/caustics",
+        "rel": "/software/repository/github/Ciela-Institute/caustics",
+        "avatar": "https://avatars.githubusercontent.com/u/110192370?v=4",
+        "description": "A gravitational lensing simulator for the machine learning era.",
+        "topics": [
+            "gravitational-lensing",
+            "pytorch"
+        ]
+    },
+    {
+        "uid": "github/Liltsliverfish/A-time-series-reconstruction-method-of-massive-astronomical-catalogues-based-on-Spark",
+        "url": "https://github.com/Liltsliverfish/A-time-series-reconstruction-method-of-massive-astronomical-catalogues-based-on-Spark",
+        "rel": "/software/repository/github/Liltsliverfish/A-time-series-reconstruction-method-of-massive-astronomical-catalogues-based-on-Spark",
+        "avatar": "https://avatars.githubusercontent.com/u/55935283?v=4",
+        "description": "A method for time-series reconstruction of massive astronomical catalogues.",
         "topics": []
     },
     {
-        "uid": "github/DReichLab/EIG",
-        "url": "https://github.com/DReichLab/EIG",
-        "rel": "/software/repository/github/DReichLab/EIG",
-        "avatar": "https://avatars.githubusercontent.com/u/11320607?v=4",
-        "description": "The EIGENSOFT package combines functionality from our population genetics methods (Patterson et al. 2006) and our EIGENSTRAT stratification correction method (Price et al. 2006).",
+        "uid": "github/Markusjsommer/BalrogCPP",
+        "url": "https://github.com/Markusjsommer/BalrogCPP",
+        "rel": "/software/repository/github/Markusjsommer/BalrogCPP",
+        "avatar": "https://avatars.githubusercontent.com/u/16809312?v=4",
+        "description": "A universal protein model for prokaryotic gene prediction",
         "topics": []
     },
     {
-        "uid": "github/LSSTDESC/sacc",
-        "url": "https://github.com/LSSTDESC/sacc",
-        "rel": "/software/repository/github/LSSTDESC/sacc",
-        "avatar": "https://avatars.githubusercontent.com/u/2731443?v=4",
-        "description": "Save All Correlations and Covariances",
+        "uid": "github/gbrammer/unicorn",
+        "url": "https://github.com/gbrammer/unicorn",
+        "rel": "/software/repository/github/gbrammer/unicorn",
+        "avatar": "https://avatars.githubusercontent.com/u/1577270?v=4",
+        "description": "Full 3D-HST grism pipeline",
         "topics": []
     },
     {
-        "uid": "github/LSSTDESC/CCL",
-        "url": "https://github.com/LSSTDESC/CCL",
-        "rel": "/software/repository/github/LSSTDESC/CCL",
-        "avatar": "https://avatars.githubusercontent.com/u/2731443?v=4",
-        "description": "DESC Core Cosmology Library: cosmology routines with validated numerical accuracy",
+        "uid": "github/gbrammer/grizli",
+        "url": "https://github.com/gbrammer/grizli",
+        "rel": "/software/repository/github/gbrammer/grizli",
+        "avatar": "https://avatars.githubusercontent.com/u/1577270?v=4",
+        "description": "Grizli:  The \"Grism redshift and line\" analysis software",
         "topics": []
     },
     {
-        "uid": "github/LSSTDESC/descqa",
-        "url": "https://github.com/LSSTDESC/descqa",
-        "rel": "/software/repository/github/LSSTDESC/descqa",
-        "avatar": "https://avatars.githubusercontent.com/u/2731443?v=4",
-        "description": "A validation framework and tests for mock galaxy catalogs and beyond",
+        "uid": "github/gbrammer/threedhst",
+        "url": "https://github.com/gbrammer/threedhst",
+        "rel": "/software/repository/github/gbrammer/threedhst",
+        "avatar": "https://avatars.githubusercontent.com/u/1577270?v=4",
+        "description": "3D-HST grism analysis software",
+        "topics": []
+    },
+    {
+        "uid": "github/DLR-RM/BlenderProc",
+        "url": "https://github.com/DLR-RM/BlenderProc",
+        "rel": "/software/repository/github/DLR-RM/BlenderProc",
+        "avatar": "https://avatars.githubusercontent.com/u/25227811?v=4",
+        "description": "A procedural Blender pipeline for photorealistic training image generation",
         "topics": [
-            "nersc",
-            "descqa",
-            "validation",
+            "blender-pipeline",
+            "segmentation",
+            "depth-images",
+            "camera-positions",
+            "suncg-scene",
+            "camera-sampling",
+            "blender-installation",
+            "synthetic",
+            "blender",
+            "rendering",
+            "pose-estimation",
+            "synthetic-data",
             "python",
-            "lsst",
-            "web-app"
+            "3d-graphics",
+            "computer-graphics",
+            "3d-reconstruction",
+            "3d-engines",
+            "3d-front-dataset"
         ]
     },
     {
-        "uid": "github/LSSTDESC/Spectractor",
-        "url": "https://github.com/LSSTDESC/Spectractor",
-        "rel": "/software/repository/github/LSSTDESC/Spectractor",
-        "avatar": "https://avatars.githubusercontent.com/u/2731443?v=4",
-        "description": "Spectractor aims at measuring the atmospheric transmission from slitless spectrophotometry images.",
-        "topics": []
+        "uid": "github/MOSAICS-NIH/MOSAICS",
+        "url": "https://github.com/MOSAICS-NIH/MOSAICS",
+        "rel": "/software/repository/github/MOSAICS-NIH/MOSAICS",
+        "avatar": "https://avatars.githubusercontent.com/u/113941588?v=4",
+        "description": "A collection of tools for characterizing membrane structure and dynamics within simulated trajectories of molecular systems.",
+        "topics": [
+            "biophysics",
+            "dynamics",
+            "grid",
+            "lattice",
+            "lipids",
+            "membrane",
+            "mosaics",
+            "simulations",
+            "structure",
+            "nih"
+        ]
     },
     {
-        "uid": "github/LSSTDESC/snmachine",
-        "url": "https://github.com/LSSTDESC/snmachine",
-        "rel": "/software/repository/github/LSSTDESC/snmachine",
-        "avatar": "https://avatars.githubusercontent.com/u/2731443?v=4",
-        "description": "Machine learning code for photometric supernova classification",
-        "topics": []
+        "uid": "github/NKI-AI/direct",
+        "url": "https://github.com/NKI-AI/direct",
+        "rel": "/software/repository/github/NKI-AI/direct",
+        "avatar": "https://avatars.githubusercontent.com/u/44191196?v=4",
+        "description": "Deep learning framework for MRI reconstruction",
+        "topics": [
+            "pytorch",
+            "deep-learning",
+            "mri-reconstruction",
+            "inverse-problems",
+            "medical-imaging",
+            "fastmri-challenge"
+        ]
     },
     {
-        "uid": "github/LSSTDESC/WeakLensingDeblending",
-        "url": "https://github.com/LSSTDESC/WeakLensingDeblending",
-        "rel": "/software/repository/github/LSSTDESC/WeakLensingDeblending",
-        "avatar": "https://avatars.githubusercontent.com/u/2731443?v=4",
-        "description": "Weak lensing fast simulations and analysis of blended objects.",
+        "uid": "github/GooglingTheCancerGenome/sv-gen",
+        "url": "https://github.com/GooglingTheCancerGenome/sv-gen",
+        "rel": "/software/repository/github/GooglingTheCancerGenome/sv-gen",
+        "avatar": "https://avatars1.githubusercontent.com/u/27248218?v=4",
+        "description": "Snakemake-based workflow for generating artificial genomes with structural variants",
         "topics": [
-            "astronomy",
-            "python"
+            "bioinformatics",
+            "structural-variants",
+            "cancer-genomics",
+            "wgs",
+            "simulator",
+            "workflow",
+            "snakemake",
+            "hpc-applications"
         ]
     },
     {
-        "uid": "github/LSSTDESC/NaMaster",
-        "url": "https://github.com/LSSTDESC/NaMaster",
-        "rel": "/software/repository/github/LSSTDESC/NaMaster",
-        "avatar": "https://avatars.githubusercontent.com/u/2731443?v=4",
-        "description": "A unified pseudo-Cl framework",
+        "uid": "github/GooglingTheCancerGenome/sv-channels",
+        "url": "https://github.com/GooglingTheCancerGenome/sv-channels",
+        "rel": "/software/repository/github/GooglingTheCancerGenome/sv-channels",
+        "avatar": "https://avatars.githubusercontent.com/u/27248218?v=4",
+        "description": "Deep learning-based structural variant caller",
         "topics": []
     },
     {
-        "uid": "github/LSSTDESC/BlendingToolKit",
-        "url": "https://github.com/LSSTDESC/BlendingToolKit",
-        "rel": "/software/repository/github/LSSTDESC/BlendingToolKit",
-        "avatar": "https://avatars.githubusercontent.com/u/2731443?v=4",
-        "description": "Tools to create blend catalogs, produce training samples and implement blending metrics",
+        "uid": "github/GooglingTheCancerGenome/sv-callers",
+        "url": "https://github.com/GooglingTheCancerGenome/sv-callers",
+        "rel": "/software/repository/github/GooglingTheCancerGenome/sv-callers",
+        "avatar": "https://avatars1.githubusercontent.com/u/27248218?v=4",
+        "description": "Snakemake-based workflow for detecting structural variants in WGS data",
         "topics": [
-            "simulation",
-            "galaxies",
-            "tutorials",
-            "cosmology",
-            "blending",
-            "crowded-scenes",
-            "blended-galaxies"
+            "bioinformatics",
+            "structural-variants",
+            "sv-calling",
+            "germline-variants",
+            "somatic-variants",
+            "cancer-genomics",
+            "wgs",
+            "workflow",
+            "snakemake",
+            "hpc-applications"
         ]
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+        "description": "A Python scikit for building and analyzing recommender systems",
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-        "description": "Python-based tools for NOAA AFSC GAP marine species surveys data",
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+        "description": "HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.",
         "topics": [
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-            "biology",
-            "fish",
-            "fisheries",
-            "noaa"
+            "hic",
+            "genomics",
+            "chromosome-conformation-capture",
+            "galaxy",
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+        "description": "A python library for accessing 2bit files",
         "topics": [
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-            "approximate-bayesian-inference",
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-        "uid": "github/jianhuupenn/SpaGCN",
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-        "description": "SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network",
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+        "url": "https://github.com/deeptools/deepTools",
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+        "avatar": "https://avatars.githubusercontent.com/u/6528975?v=4",
+        "description": "a suite of python tools particularly developed for the efficient analysis of high-throughput sequencing data, such as ChIP-seq, RNA-seq or MNase-seq.  deepTools contains useful modules to process the mapped reads data for multiple quality checks, creating normalized coverage files in standard bedGraph and bigWig file formats, that allow comparison between different files (for example, treatment and control). Finally, using such normalized and standardized files, \u2026",
         "topics": [
-            "spatial-transcriptomics",
-            "graph-convolutional-network",
-            "spatial-domains",
-            "spatially-variable-genes"
+            "python",
+            "bioinformatics",
+            "genomics",
+            "ngs",
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-        "avatar": "https://avatars.githubusercontent.com/u/16811010?v=4",
-        "description": "anTraX: high throughput tracking of color-tagged insects",
+        "uid": "github/deeptools/deeptools_intervals",
+        "url": "https://github.com/deeptools/deeptools_intervals",
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+        "avatar": "https://avatars.githubusercontent.com/u/6528975?v=4",
+        "description": "A python library for constructing interval trees with associated exon/annotation information",
         "topics": [
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-            "behavioral-tracking",
-            "collective-behavior",
-            "social-behavior",
-            "social-insects",
-            "ants",
-            "machine-vision",
-            "machine-learning",
-            "tensorflow"
+            "bioinformatics",
+            "interval-tree",
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+        "avatar": "https://avatars0.githubusercontent.com/u/44212672?v=4",
+        "description": "Automatic eukaryotic taxonomic classification",
+        "topics": []
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+        "description": "JSON output from a shell",
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-        "description": "Deep survival analysis made easy ",
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+        "description": "Toolbox for molecular animations in Blender, powered by Geometry Nodes.",
         "topics": [
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+            "protein-structure",
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+            "sciart",
+            "visualisation",
+            "structural-biology",
+            "blender-addon",
+            "protein-data-bank",
+            "molecule",
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-        "description": "Galaxy Cluster and Weak Lensing Tools",
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+        "description": "CJAM : Jeans Anisotropic MGE modelling code written in C from Watkins et al. 2013, MNRAS, 436, 2598",
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-        "description": "The BaitFisher-package is a software package for designing hybrid enrichment probes. For more information see:",
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+        "url": "https://github.com/NLeSC/UncertaintyVisualization",
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-        "description": "INflationary potential Simulator and ANalysis Engine",
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+        "description": "Cross-Perspective Topic Modeling",
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-        "description": "Software package that includes various routines and tools allowing the user to reduce, process, and manipulate pulsar data, and create times-of-arrival compatible with tempo and tempo2 timing software. ",
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+        "description": "An interactive 3D web viewer of up to million points on one screen that represent data. Provides interaction for viewing high-dimensional data that has been previously embedded in 3D or 2D. Based on graphosaurus.js and three.js. For a Linux release of a complete embedding+visualization pipeline please visit https://github.com/sonjageorgievska/Embed-Dive.",
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+        "description": "Deploy GlusterFS, Docker, Spark and JupyterHub services on bare-metal cluster.",
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-        "description": "controllable lossy compression of BAM/CRAM files.",
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-        "description": "Program for aligning DNA sequences, a pairwise aligner.",
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+        "description": "Webservice for eEcology Annotation project.",
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-        "description": "Tools for working with SAM/BAM data",
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+        "description": "Python package for Large Scale Imaging research @ NLeSC",
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-        "description": "\ud83e\udd20 \ud83d\udcff The Highly Adaptive Lasso",
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+        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
+        "description": "Convert massive pointcloud, for example ahn2 (640 Billion points) to potree format.",
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-        "description": "A Python API for Sub-halo Clustering and Abundance Matching",
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+        "description": "A Bayesian Spectral Line Modeling Framework",
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+        "description": "Radio recombination line observations of simulated HII regions with various internal kinematic structure",
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-        "description": "per-coadd PSF for unWISE forced photometry",
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+        "description": "A Python Tool to Query the Millennium Simulation UWS/TAP client",
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-        "description": "R package for the inference of cell fate bias from single-cell RNA-seq data.",
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-        "description": "Demultiplexing pooled scRNA-seq data with or without genotype reference",
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+        "description": "Kinetoplast genOMICS",
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         "topics": [
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         "topics": [
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         "topics": []
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     {
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+        "rel": "/software/repository/github/TORCH-Consortium/MAGMA",
+        "avatar": "https://avatars.githubusercontent.com/u/101628119?v=4",
+        "description": "A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research",
+        "topics": [
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+            "pipeline",
+            "mycobacterium-tuberculosis",
+            "tuberculosis",
+            "nextflow-pipeline",
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+        "description": "Word2Vec based similarity measure of mass spectrometry data.",
         "topics": [
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-            "time-series-analysis",
-            "julia"
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-        "description": "The purpose of this program is to see the effectivity and efficiency that a PCA folding analysis has compared to the Epoch Folding, which is the standard used for pulsar period computations.",
+        "uid": "github/iomega/paired-data-form",
+        "url": "https://github.com/iomega/paired-data-form",
+        "rel": "/software/repository/github/iomega/paired-data-form",
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+        "description": "Linking mas spectra and genomic information to discover new chemistry",
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-        "url": "https://github.com/jamesaird/FAST",
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-        "description": "Fitting and Assessment of Synthetic Templates  - an IDL-based code that fits stellar population synthesis templates to broadband photometry and/or spectra.",
+        "uid": "github/iomega/zenodo-upload",
+        "url": "https://github.com/iomega/zenodo-upload",
+        "rel": "/software/repository/github/iomega/zenodo-upload",
+        "avatar": "https://avatars3.githubusercontent.com/u/39822447?v=4",
+        "description": "JS package to create a new version of a Zenodo upload with a file",
         "topics": []
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-        "url": "https://github.com/cosmo-epfl/chemiscope",
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-        "avatar": "https://avatars0.githubusercontent.com/u/7110305?v=4",
-        "description": "An interactive structure/property explorer for materials and molecules",
+        "uid": "github/TinkerTools/Tinker-HP",
+        "url": "https://github.com/TinkerTools/tinker-hp",
+        "rel": "/software/repository/github/TinkerTools/Tinker-HP",
+        "avatar": "https://avatars.githubusercontent.com/u/39835945?v=4",
+        "description": "Tinker-HP: High-Performance Massively Parallel Evolution of Tinker on CPUs & GPUs",
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-        "uid": "github/1313e/PRISM",
-        "url": "https://github.com/1313e/PRISM",
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-        "description": "An alternative to MCMC for rapid analysis of models",
+        "uid": "github/TinkerTools/tinker9",
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+        "rel": "/software/repository/github/TinkerTools/tinker9",
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         "topics": [
-            "model",
-            "analysis-pipeline",
-            "model-analysis",
-            "emulator",
-            "regression",
-            "python3",
-            "python"
+            "molecular-dynamics",
+            "molecular-mechanics",
+            "force-fields",
+            "biomolecular-simulation",
+            "molecular-modeling",
+            "gpu-computing"
         ]
     },
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-        "uid": "github/1313e/CMasher",
-        "url": "https://github.com/1313e/CMasher",
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-        "avatar": "https://avatars.githubusercontent.com/u/30159027?v=4",
-        "description": "Scientific colormaps for making accessible, informative and 'cmashing' plots",
+        "uid": "github/ShixiangWang/sigminer",
+        "url": "https://github.com/ShixiangWang/sigminer",
+        "rel": "/software/repository/github/ShixiangWang/sigminer",
+        "avatar": "https://avatars1.githubusercontent.com/u/25057508?v=4",
+        "description": "\ud83c\udf32 An easy-to-use and scalable toolkit for genomic alteration (mutational) signature analysis and visualization in R",
         "topics": [
-            "python",
-            "colormaps",
-            "data-visualization",
-            "plotting",
-            "matplotlib",
-            "utility-functions"
+            "mutational-signatures",
+            "copynumber-signatures",
+            "somatic-variants",
+            "somatic-mutations",
+            "cosmic-signatures",
+            "signature-extraction",
+            "nmf",
+            "nmf-extraction",
+            "bayesian-nmf",
+            "bioinformatics",
+            "r",
+            "cancer-research",
+            "visualization",
+            "sbs",
+            "dbs",
+            "indel",
+            "cnv",
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-        "description": "A MATLAB codebase to analyze TEM images of soot, which includes new methods associated with this project and a compilation of other pre-existing methods into a single package.",
+        "uid": "github/PEREGRINE-GW/saqqara",
+        "url": "https://github.com/PEREGRINE-GW/saqqara",
+        "rel": "/software/repository/github/PEREGRINE-GW/saqqara",
+        "avatar": "https://avatars.githubusercontent.com/u/140732115?v=4",
+        "description": " A simulation-based Inference (SBI) library designed for stochastic gravitational wave background data analysis",
+        "topics": []
+    },
+    {
+        "uid": "github/PEREGRINE-GW/peregrine",
+        "url": "https://github.com/PEREGRINE-GW/peregrine",
+        "rel": "/software/repository/github/PEREGRINE-GW/peregrine",
+        "avatar": "https://avatars.githubusercontent.com/u/140732115?v=4",
+        "description": "A simulation-based Inference (SBI) library designed to perform analysis on a wide class of gravitational wave signals",
         "topics": [
-            "soot",
-            "aggregates",
-            "transmission-electron-microscopy",
-            "particle-size-distribution",
-            "tem",
-            "tem-images",
-            "particle-diameter",
-            "aerosols",
-            "image-processing"
+            "algorithm",
+            "gravitational-waves",
+            "inference",
+            "machine-learning",
+            "neural-ratio-estimation",
+            "parameter-estimation",
+            "python",
+            "pytorch-lightning",
+            "simulation-based-inference"
         ]
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-        "description": "FAMED (Fast and AutoMated pEak bagging with DIAMONDS) - Pipeline",
-        "topics": []
+        "uid": "github/MDAnalysis/mdanalysis",
+        "url": "https://github.com/MDAnalysis/mdanalysis",
+        "rel": "/software/repository/github/MDAnalysis/mdanalysis",
+        "avatar": "https://avatars1.githubusercontent.com/u/11445951?v=4",
+        "description": "MDAnalysis is a Python library to analyze molecular dynamics trajectories.",
+        "topics": [
+            "molecular-dynamics",
+            "python",
+            "science",
+            "trajectory-analysis",
+            "molecular-simulation",
+            "molecular-dynamics-simulation",
+            "mdanalysis",
+            "computational-chemistry"
+        ]
     },
     {
-        "uid": "github/EnricoCorsaro/DIAMONDS",
-        "url": "https://github.com/EnricoCorsaro/DIAMONDS",
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-        "description": "A numpyro implementation of BayeSN, the optical-NIR SED model for type Ia supernovae",
+        "uid": "github/Jammy2211/PyAutoCTI",
+        "url": "https://github.com/Jammy2211/PyAutoCTI",
+        "rel": "/software/repository/github/Jammy2211/PyAutoCTI",
+        "avatar": "https://avatars.githubusercontent.com/u/23455639?v=4",
+        "description": "PyAutoCTI: Charge Transfer Inefficiency Calibration",
         "topics": []
     },
     {
-        "uid": "github/MonashSmartStructures/ospgrillage",
-        "url": "https://github.com/MonashSmartStructures/ospgrillage",
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-        "description": "`ospgrillage` is a package that wraps `OpenSeesPy` with an interface dedicated to the development and analysis of regular bridge deck grillage models.",
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-            "structural-analysis",
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-        "avatar": "https://avatars.githubusercontent.com/u/84508231?v=4",
-        "description": "GH action to check dependency licence issues using ort",
+        "uid": "github/Jammy2211/PyAutoGalaxy",
+        "url": "https://github.com/Jammy2211/PyAutoGalaxy",
+        "rel": "/software/repository/github/Jammy2211/PyAutoGalaxy",
+        "avatar": "https://avatars.githubusercontent.com/u/23455639?v=4",
+        "description": "PyAutoGalaxy: Open-Source Multiwavelength Galaxy Structure & Morphology",
         "topics": []
     },
     {
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-        "url": "https://github.com/felixchenier/kineticstoolkit",
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-        "description": "Kinetics Toolkit is an open-source, pure-python package of integrated classes and functions that aims to facilitate research in biomechanics using python.",
+        "uid": "github/Jammy2211/PyAutoLens",
+        "url": "https://github.com/Jammy2211/PyAutoLens",
+        "rel": "/software/repository/github/Jammy2211/PyAutoLens",
+        "avatar": "https://avatars.githubusercontent.com/u/23455639?v=4",
+        "description": "PyAutoLens: Open Source Strong Gravitational Lensing",
         "topics": [
-            "biomechanics",
-            "kinematics",
-            "toolbox",
-            "api",
-            "python",
-            "kinetics"
+            "astronomy",
+            "gravitational-lensing",
+            "lens-modeling",
+            "cosmology",
+            "galaxy",
+            "gravitational-lenses",
+            "astrophysics",
+            "physics",
+            "image-processing",
+            "image",
+            "python"
         ]
     },
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-        "uid": "github/PaulHancock/Robbie",
-        "url": "https://github.com/PaulHancock/Robbie",
-        "rel": "/software/repository/github/PaulHancock/Robbie",
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-        "avatar": "https://avatars.githubusercontent.com/u/8219382?v=4",
-        "description": "The Aegean source finding program and associated tools",
+        "uid": "github/bblodfon/emba",
+        "url": "https://github.com/bblodfon/emba",
+        "rel": "/software/repository/github/bblodfon/emba",
+        "avatar": "https://avatars2.githubusercontent.com/u/10909555?v=4",
+        "description": "Ensemble Model Biomarker Analysis R package",
         "topics": [
-            "astronomy-library",
-            "source-finding",
-            "python",
-            "cataloguer"
+            "r",
+            "r-package",
+            "biomarkers",
+            "ensemble-models"
         ]
     },
     {
-        "uid": "github/ParBLiSS/FastANI",
-        "url": "https://github.com/ParBLiSS/FastANI",
-        "rel": "/software/repository/github/ParBLiSS/FastANI",
-        "avatar": "https://avatars.githubusercontent.com/u/16827085?v=4",
-        "description": "Fast Whole-Genome Similarity (ANI) Estimation",
+        "uid": "github/jollejolles/pirecorder",
+        "url": "https://github.com/JolleJolles/pirecorder",
+        "rel": "/software/repository/github/jollejolles/pirecorder",
+        "avatar": "https://avatars3.githubusercontent.com/u/8775649?v=4",
+        "description": "Controlled and automated image and video recording with the raspberry pi",
         "topics": [
-            "microbial-genomics"
+            "recording",
+            "raspberrypi",
+            "camera-calibration",
+            "rpi"
         ]
     },
     {
-        "uid": "github/LandSciTech/ccviR",
-        "url": "https://github.com/LandSciTech/ccviR",
-        "rel": "/software/repository/github/LandSciTech/ccviR",
-        "avatar": "https://avatars.githubusercontent.com/u/41919529?v=4",
-        "description": "Implement NatureServe climate change vulnerability index in R",
+        "uid": "github/HalHaggard/EARL",
+        "url": "https://github.com/HalHaggard/EARL",
+        "rel": "/software/repository/github/HalHaggard/EARL",
+        "avatar": "https://avatars.githubusercontent.com/u/35935417?v=4",
+        "description": "Exoplanet Analytic Reflected Lightcurves (EARL): This Mathematica code allows you to compute the analytic form of a reflected lightcurve given a spherical harmonic decomposition of the planet albedo map and the viewing and orbital geometries. The theoretical foundation for this code is laid out in the paper \"Analytic Reflected Lightcurves for Exoplanets\" by Hal M. Haggard and Nicolas B. Cowan, which can be found the arXiv.",
         "topics": []
     },
     {
-        "uid": "github/ColemanRHarris/mxnorm",
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-        "avatar": "https://avatars.githubusercontent.com/u/29362888?v=4",
-        "description": "R package to normalize multiplexed imaging data.",
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-        "uid": "github/GabrielNakamura/FishPhyloMaker",
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-        "rel": "/software/repository/github/GabrielNakamura/FishPhyloMaker",
-        "avatar": "https://avatars.githubusercontent.com/u/13869477?v=4",
-        "description": "Making phylogenies for a list of fish species ",
+        "uid": "github/EnsembleGovServices/kamodo-core",
+        "url": "https://github.com/EnsembleGovServices/kamodo-core",
+        "rel": "/software/repository/github/EnsembleGovServices/kamodo-core",
+        "avatar": "https://avatars.githubusercontent.com/u/73653894?v=4",
+        "description": "A functional API for space weather models and data",
         "topics": []
     },
     {
@@ -7577,2164 +7524,2345 @@
         "topics": []
     },
     {
-        "uid": "github/Tarskin/LaCyTools",
-        "url": "https://github.com/Tarskin/LaCyTools",
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-        "avatar": "https://avatars.githubusercontent.com/u/4366212?v=4",
-        "description": "A high-throughput data extraction package for LC-MS data.",
+        "uid": "github/dianna-ai/dianna",
+        "url": "https://github.com/dianna-ai/dianna",
+        "rel": "/software/repository/github/dianna-ai/dianna",
+        "avatar": "https://avatars.githubusercontent.com/u/79975160?v=4",
+        "description": "Deep Insight And Neural Network Analysis",
         "topics": []
     },
     {
-        "uid": "github/gmbrandt/HTOF",
-        "url": "https://github.com/gmbrandt/HTOF",
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-        "avatar": "https://avatars.githubusercontent.com/u/38594712?v=4",
-        "description": "HTOF: Code which parses the intermediate data from Hipparcos and Gaia and fits astrometric solutions to those data. Capable of computing likelyhoods and parameter errors in line with the catalog.",
+        "uid": "github/DedalusProject/eigentools",
+        "url": "https://github.com/DedalusProject/eigentools",
+        "rel": "/software/repository/github/DedalusProject/eigentools",
+        "avatar": "https://avatars.githubusercontent.com/u/25985571?v=4",
+        "description": "The Eigentools package for Dedalus",
         "topics": []
     },
     {
-        "uid": "github/gmbrandt/xwavecal",
-        "url": "https://github.com/gmbrandt/xwavecal",
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-        "avatar": "https://avatars.githubusercontent.com/u/38594712?v=4",
-        "description": "A library of routines for wavelength calibrating echelle spectrographs for high precision radial velocity work. A limited data-reduction pipeline is included.",
-        "topics": []
+        "uid": "github/rbturnbull/ausdex",
+        "url": "https://github.com/rbturnbull/ausdex",
+        "rel": "/software/repository/github/rbturnbull/ausdex",
+        "avatar": "https://avatars.githubusercontent.com/u/43091272?v=4",
+        "description": "A Python package for adjusting Australian dollars for inflation",
+        "topics": [
+            "inflation",
+            "australia"
+        ]
     },
     {
-        "uid": "github/lorenaacuna/GASTLI",
-        "url": "https://github.com/lorenaacuna/GASTLI",
-        "rel": "/software/repository/github/lorenaacuna/GASTLI",
-        "avatar": "https://avatars.githubusercontent.com/u/66270562?v=4",
-        "description": "GAS gianT modeL for Interiors",
+        "uid": "github/pw31/GGchem",
+        "url": "https://github.com/pw31/GGchem",
+        "rel": "/software/repository/github/pw31/GGchem",
+        "avatar": "https://avatars.githubusercontent.com/u/18750275?v=4",
+        "description": "fast thermo-chemical equilibrium code with or without equilibrium condensation down to 100K ",
         "topics": []
     },
     {
-        "uid": "github/iobio-zjut/IPTDFold",
-        "url": "https://github.com/iobio-zjut/IPTDFold",
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-        "avatar": "https://avatars.githubusercontent.com/u/43274315?v=4",
-        "description": "A de novo protein structure prediction by iterative partition sampling, topology adjustment, and residue-level distance deviation optimization",
+        "uid": "github/jenniferlu717/Bracken",
+        "url": "https://github.com/jenniferlu717/Bracken",
+        "rel": "/software/repository/github/jenniferlu717/Bracken",
+        "avatar": "https://avatars.githubusercontent.com/u/3779419?v=4",
+        "description": "(Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.",
         "topics": []
     },
     {
-        "uid": "github/somefunAgba/NLSIG-COVID19Lab",
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-        "description": "A nlogistic-sigmoid playground for modelling the COVID-19 pandemic growth",
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-            "matlab",
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+        "uid": "github/cagrikymk/JAX-ReaxFF",
+        "url": "https://github.com/cagrikymk/JAX-ReaxFF",
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+        "avatar": "https://avatars.githubusercontent.com/u/15324155?v=4",
+        "description": "JAX-ReaxFF: A Gradient Based Framework for Extremely Fast Optimization of Reactive Force Fields",
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-        "uid": "github/ccsb-scripps/Illustrate",
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-        "avatar": "https://avatars.githubusercontent.com/u/47901817?v=4",
-        "description": "Biomolecular Illustration Tool",
+        "uid": "github/pierrepeterlongo/back_to_sequences",
+        "url": "https://github.com/pierrepeterlongo/back_to_sequences",
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+        "avatar": "https://avatars.githubusercontent.com/u/8103041?v=4",
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-        "uid": "github/baiwenjia/ukbb_cardiac",
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-        "avatar": "https://avatars.githubusercontent.com/u/10883629?v=4",
-        "description": "Some code for processing and analysing UK Biobank cardiac MR images.",
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-            "rrna",
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-        "description": ":mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes",
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-        "description": ":id: Scan contig files against PubMLST typing schemes",
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+        "description": "Super fast dynamic nested sampling with PolyChord (Python, C++ and Fortran likelihoods).",
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-        "description": "Pairwise SNP distance matrix from a FASTA sequence alignment",
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+        "description": "\"Perfect\" dynamic and standard nested sampling for spherically symmetric likelihoods and priors.",
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-        "description": ":scissors: :zap: Rapid haploid variant calling and core genome alignment",
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-            "indel-discovery"
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-        "description": "Filter SAM file for soft and hard clipped alignments",
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-        "description": ":chart_with_upwards_trend: Automatically optimise three of Velvet's assembly parameters.",
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+        "avatar": "https://avatars.githubusercontent.com/u/149570313?v=4",
+        "description": "A high-level interface designed for the easy generation of hydraulic and water quality scenario data.",
+        "topics": [
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+            "epanet-python-toolkit",
+            "python",
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+            "water-distribution-networks"
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-            "functional-assignment",
-            "bacterial-genomes",
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+        "uid": "github/Huang-CL/Magrathea",
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-        "description": "Likelihood Estimation of Observational data with Python",
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-        "description": "A tool for light curve extraction from the TESS FFIs.",
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+        "description": "Software package for testing of the Fast Folding Algorithm (FFA)",
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-        "description": "For characterizing flares with convolutional neural networks",
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-        "description": "PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank",
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-        "description": "A python library for sampling image textures from the anisotropic fractional Brownian field.",
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+        "description": "3D Slicer plugin for Liver Anatomy Annotation by R-Vessel-X",
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+        "description": "Based on the OpenMRS HTML Form Entry module, you can find in this github repository a set of forms personalized for neglected tropical virus, including clinical assesment, personal history and epidemiological data. ",
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-        "description": "A code to fit the spectrum of quasar",
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+        "description": "Standalone tool and library allowing to work with barcoded linked-reads",
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-            "cython",
-            "fortran",
-            "python",
-            "exoplanets",
-            "astrobiology"
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+            "black-holes",
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-            "planetary-atmospheres",
-            "atmospheric-science",
-            "atmospheric-modelling",
-            "geophysical-fluid-dynamics",
-            "climate-model"
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+        "description": "a Python package for the Standards of Fundamental Astronomy (SOFA) service",
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+        "description": "[NeurIPS2023,ICML2024] Multiparameter Persistence for Machine Learning ",
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+            "topological-data-analysis",
+            "tda",
             "python",
-            "async",
-            "real-time"
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-        "description": "A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings",
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+        "url": "https://github.com/alesantuz/musclesyneRgies",
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+        "avatar": "https://avatars.githubusercontent.com/u/7524938?v=4",
+        "description": "R package to extract muscle synergies from electromyogram",
         "topics": [
-            "simulation",
-            "physics-simulation",
-            "dna"
+            "muscle-synergies",
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-        "description": "Interface to C wcslib",
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         "topics": []
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-        "description": "Density, distribution function, quantile function and random generation for the 3D NFW profile",
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+        "description": "VesselVio is an open-source application for the analysis and visualization of segmented vasculature datasets",
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-        "description": "The hyper.fit hyperplane fitting package.",
-        "topics": []
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+        "description": "Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.",
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+            "variant-calling",
+            "online-algorithms",
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-        "url": "https://github.com/asgr/ProPane",
-        "rel": "/software/repository/github/asgr/ProPane",
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-        "description": "Package of stacking related functions, replacing older Rwcs and ProFound related functions.",
-        "topics": []
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+        "url": "https://github.com/heracles-ec/heracles",
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+        "description": "Harmonic-space statistics on the sphere",
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+            "cosmology",
+            "python",
+            "spherical-harmonics",
+            "healpix",
+            "large-scale-structure"
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-        "url": "https://github.com/asgr/ProSpect",
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-        "avatar": "https://avatars.githubusercontent.com/u/5617132?v=4",
-        "description": "Spectral Generation Package",
-        "topics": []
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+        "description": "FITS image interaction, world coordinate solving, point source extraction, photometry, etc.  See the github Wiki link below for more info. If you require CCDLAB for UVIT, please ensure you have the UVIT Calibration Database which you can find at the CCDLAB Wiki link below.",
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-        "description": "ProFound source finding and extraction",
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+        "description": "Fast Automatic World Coordinate Solution Solver. See the github Wiki link below for more info.",
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-        "url": "https://github.com/asgr/Rfits",
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+        "description": "FITS File interaction written in Visual Studio C# .Net, compatible across all .Net platforms. JPFITS is not based on any other implementations and is written from the ground-up, consistent with the FITS standard, designed to interact with FITS files as object-oriented structures. See the github Wiki link below for more info.",
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-        "description": "celestial R package",
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-        "description": "ProFound + ProFit + ProSpect = ProFuse",
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-        "avatar": "https://avatars1.githubusercontent.com/u/33450111?v=4",
-        "description": "This is the development home of the workflow management system Snakemake. For general information, see",
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+        "url": "https://github.com/4pisky/fourpisky-core",
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         "topics": [
-            "snakemake",
-            "reproducibility",
-            "workflow-management"
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-        "description": "A kernel-independent fast multipole method library with Python interface.",
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+        "description": "A Bayesian inference software package for end-to-end fitting and interpretation of electromagnetic transients",
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+        "description": "spam is a Python 3 package, used to search for imprints of Hu-Sawicki f(R) gravity in the rotation curves of the SPARC sample.",
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+    },
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@@ -9749,952 +9877,1031 @@
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-        "description": "Program to find core gene consensus synteny, hotspots between these, and construct spatially aware multiple sequence alignments of core genes ",
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+        "url": "https://github.com/kircherlab/cfDNA-UniFlow",
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+        "avatar": "https://avatars.githubusercontent.com/u/26594270?v=4",
+        "description": "Workflow for preprocessing cfDNA samples.",
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-        "description": "Tool intended to pull out sequences and annotations between insertion sites specified by the user.",
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+        "avatar": "https://avatars.githubusercontent.com/u/44244057?v=4",
+        "description": "Transit and Radial velocity Interactive Fitting tool for Orbital analysis and N-body simulations: The Exo-Striker",
         "topics": [
-            "insertion-sites",
-            "annotations",
-            "mobile-genetic-elements",
-            "bacterial-genomes",
-            "prokaryotic-genomes"
+            "exoplanet",
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+            "periodogram",
+            "radial-velocity",
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-        "uid": "github/engyasin/Offline_MOT",
-        "url": "https://github.com/engyasin/Offline_MOT",
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-        "description": "Multiple traffic entities detection and tracking from bird-view drone stationary  videos https://engyasin.github.io/Offline_MOT/",
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+        "description": "Interactive application for large-scale metabolomics (MS1). ",
         "topics": [
-            "multiple-object-tracking",
-            "drone",
-            "object-detection",
-            "python"
+            "mass-spectrometry",
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+            "python",
+            "mint",
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+            "interactive"
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-        "description": "solid_dmft is a versatile python wrapper to perform DFT+DMFT calculations utilizing the TRIQS software library.",
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+        "description": "Software for the prediction of DEER and PRE data from conformational ensembles.",
         "topics": [
-            "solid-state-physics",
-            "dmft",
-            "correlated-electrons"
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+            "nmr-spectroscopy",
+            "molecular-simulation",
+            "biophysics"
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-        "uid": "github/broadinstitute/picard",
-        "url": "https://github.com/broadinstitute/picard",
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-        "description": "A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.",
-        "topics": []
+        "uid": "github/patrickfuchs/buildH",
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+        "avatar": "https://avatars.githubusercontent.com/u/13885052?v=4",
+        "description": ":computer: Build hydrogen atoms from united-atom molecular dynamics of lipids and calculate the order parameters.",
+        "topics": [
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-        "description": "a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.",
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-        "description": "Java tools for analyzing Drop-seq data",
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-        "description": "Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments",
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-            "spark",
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-            "bioinformatics",
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-        "description": "A software package for analyzing snapshots of developmental processes",
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         "topics": [
-            "single-cell",
-            "rna-seq",
-            "time-series",
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+        "description": "A community effort to develop an open standard library for Medical Physics in Python. Building quality transparent software together via peer review and open source distribution. Open code is better science.",
+        "topics": [
+            "medical-physics",
+            "dicom",
+            "radiation-oncology",
+            "radiation-therapy",
+            "radiation-physics",
+            "radiotherapy"
+        ]
+    },
+    {
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+        "description": null,
+        "topics": []
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+        "rel": "/software/repository/github/djones1040/PythonPhot",
+        "avatar": "https://avatars.githubusercontent.com/u/1512537?v=4",
+        "description": "Simple DAOPHOT-type photometry in Python translated from IDL AstroLib photometry algorithms.  Please email me with bugs, suggestions, omissions, etc.  The code is citable as part of the Astrophysics Source Code Library (http://ascl.net/1501.010).",
+        "topics": []
+    },
+    {
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+        "avatar": "https://avatars.githubusercontent.com/u/31344317?v=4",
+        "description": "Efficient and parallel algorithms for point cloud registration [C++, Python]",
+        "topics": [
+            "cpp",
+            "icp",
+            "multi-threading",
+            "pcl",
+            "pointcloud",
+            "python",
+            "registration",
+            "scan-matching",
+            "point-cloud-regstration",
+            "open3d"
+        ]
+    },
+    {
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+        "avatar": "https://avatars.githubusercontent.com/u/5559154?v=4",
+        "description": "Continuum fitting for DESI",
+        "topics": []
+    },
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+        "url": "https://github.com/paulsengroup/StripePy",
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-        "description": "Blazing fast toolkit to work with .hic and .cool files",
+        "description": "StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning",
+        "topics": []
+    },
+    {
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+        "url": "https://github.com/paulsengroup/hictkpy",
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+        "avatar": "https://avatars.githubusercontent.com/u/100847901?v=4",
+        "description": "Python bindings for hictk: read and write .cool and .hic files directly from Python",
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-            "conversion",
             "cooler",
-            "cxx",
-            "cxx-library",
-            "cxx17",
             "hic",
-            "hictk"
+            "hictk",
+            "python3"
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@@ -10714,6914 +10921,6697 @@
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-        "description": "Python bindings for hictk: read and write .cool and .hic files directly from Python",
+        "description": "Blazing fast toolkit to work with .hic and .cool files",
         "topics": [
-            "bindings",
             "bioinformatics",
+            "cli-application",
+            "conversion",
             "cooler",
+            "cxx",
+            "cxx-library",
+            "cxx17",
             "hic",
-            "hictk",
-            "python3"
+            "hictk"
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-        "uid": "github/mpip/pfft",
-        "url": "https://github.com/mpip/pfft",
-        "rel": "/software/repository/github/mpip/pfft",
-        "avatar": "https://avatars.githubusercontent.com/u/4056386?v=4",
-        "description": "Parallel fast Fourier transforms",
+        "uid": "github/danielreardon/scintools",
+        "url": "https://github.com/danielreardon/scintools",
+        "rel": "/software/repository/github/danielreardon/scintools",
+        "avatar": "https://avatars.githubusercontent.com/u/40694862?v=4",
+        "description": "Tools for analysing of pulsar scintillations ",
         "topics": []
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-        "description": "This repository contains RanDepict, an easy-to-use utility to generate a big variety of chemical structure depictions (random depiction styles and image augmentations) based on RDKit, CDK, Indigo and PIKAChU.",
+        "uid": "github/konkolyseismolab/seismolab",
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-        "description": "Toolbox for OCR post-correction",
-        "topics": []
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+        "avatar": "https://avatars.githubusercontent.com/u/6547310?v=4",
+        "description": "Software suite to perform solid-body tidal dissipation calculations for rocky and icy worlds",
+        "topics": [
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+            "tides",
+            "exoplanets",
+            "planetary-science",
+            "orbital-mechanics",
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-        "description": "Numerical Run Length Encoding and Arithmetic in Cython",
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         "topics": []
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-        "avatar": "https://avatars.githubusercontent.com/u/3458354?v=4",
-        "description": "Parallel tempering MCMC sampler package written in Python",
+        "uid": "github/HadrienG/InSilicoSeq",
+        "url": "https://github.com/HadrienG/InSilicoSeq",
+        "rel": "/software/repository/github/HadrienG/InSilicoSeq",
+        "avatar": "https://avatars.githubusercontent.com/u/7337110?v=4",
+        "description": ":rocket: A sequencing simulator",
+        "topics": [
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+            "illumina-sequencing",
+            "sequencing",
+            "simulation",
+            "metagenomics"
+        ]
+    },
+    {
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+        "avatar": "https://avatars.githubusercontent.com/u/6502785?v=4",
+        "description": "Private, browser-based placement of genome sequences on phylogenetic trees using UShER.",
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-        "description": "Permutation testing for GWAS using FPGAs",
+        "uid": "github/rrwick/Filtlong",
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+        "rel": "/software/repository/github/rrwick/Filtlong",
+        "avatar": "https://avatars.githubusercontent.com/u/7053555?v=4",
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         "topics": []
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     {
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-        "avatar": "https://avatars.githubusercontent.com/u/60979954?v=4",
-        "description": "determine features of organisms, clades, taxonomic units, genes",
+        "uid": "github/rrwick/Deepbinner",
+        "url": "https://github.com/rrwick/Deepbinner",
+        "rel": "/software/repository/github/rrwick/Deepbinner",
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+        "description": "a signal-level demultiplexer for Oxford Nanopore reads",
         "topics": []
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-        "description": "PhotoDissociation Region Toolbox Python module",
+        "uid": "github/rrwick/Porechop",
+        "url": "https://github.com/rrwick/Porechop",
+        "rel": "/software/repository/github/rrwick/Porechop",
+        "avatar": "https://avatars.githubusercontent.com/u/7053555?v=4",
+        "description": "adapter trimmer for Oxford Nanopore reads",
         "topics": []
     },
     {
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-        "url": "https://github.com/mpound/comb",
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-        "avatar": "https://avatars.githubusercontent.com/u/22331890?v=4",
-        "description": "The AT&T Bell labs singledish radio astronomy data reduction package",
+        "uid": "github/rrwick/Unicycler",
+        "url": "https://github.com/rrwick/Unicycler",
+        "rel": "/software/repository/github/rrwick/Unicycler",
+        "avatar": "https://avatars.githubusercontent.com/u/7053555?v=4",
+        "description": "hybrid assembly pipeline for bacterial genomes",
         "topics": []
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     {
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-        "description": "clusters and compares protein or nucleotide sequences.",
-        "topics": [
-            "clustering",
-            "clustering-algorithm"
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+        "uid": "github/rrwick/Bandage",
+        "url": "https://github.com/rrwick/Bandage",
+        "rel": "/software/repository/github/rrwick/Bandage",
+        "avatar": "https://avatars.githubusercontent.com/u/7053555?v=4",
+        "description": "a Bioinformatics Application for Navigating De novo Assembly Graphs Easily",
+        "topics": []
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-        "description": "Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4",
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+        "avatar": "https://avatars.githubusercontent.com/u/83091952?v=4",
+        "description": "Molecular Orbital PACkage",
         "topics": [
-            "transposable-elements",
-            "genome"
+            "quantum-chemistry",
+            "electronic-structure",
+            "molecular-orbital-theory",
+            "semiempirical-methods"
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+        "avatar": "https://avatars.githubusercontent.com/u/1192804?v=4",
+        "description": "The DALiuGE Execution Engine",
         "topics": []
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-        "url": "https://github.com/genouest/biomaj-cli",
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-        "avatar": "https://avatars.githubusercontent.com/u/1004255?v=4",
-        "description": "CLI for BioMAJ",
+        "uid": "github/jeschaef/Graph4Med",
+        "url": "https://github.com/jeschaef/Graph4Med",
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-        "avatar": "https://avatars.githubusercontent.com/u/25472841?v=4",
-        "description": "Interface to the World Database on Protected Areas",
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+        "rel": "/software/repository/github/cumbof/honto",
+        "avatar": "https://avatars.githubusercontent.com/u/3764656?v=4",
+        "description": "A novel method for assessing and measuring homophily in networks",
         "topics": [
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-            "spatial",
-            "database",
-            "biodiversity",
-            "protected-areas",
-            "cran",
-            "r-package",
-            "rstats"
+            "graphs",
+            "homophily",
+            "networks"
         ]
     },
     {
-        "uid": "github/Starfish-develop/Starfish",
-        "url": "https://github.com/Starfish-develop/Starfish",
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-        "avatar": "https://avatars.githubusercontent.com/u/85192441?v=4",
-        "description": "Tools for Flexible Spectroscopic Inference",
+        "uid": "github/kowallus/mbgc",
+        "url": "https://github.com/kowallus/mbgc",
+        "rel": "/software/repository/github/kowallus/mbgc",
+        "avatar": "https://avatars.githubusercontent.com/u/6030543?v=4",
+        "description": "Multiple Bacteria Genome Compressor (MBGC)",
+        "topics": []
+    },
+    {
+        "uid": "github/sparks-baird/xtal2png",
+        "url": "https://github.com/sparks-baird/xtal2png",
+        "rel": "/software/repository/github/sparks-baird/xtal2png",
+        "avatar": "https://avatars.githubusercontent.com/u/71920635?v=4",
+        "description": "Encode/decode a crystal structure to/from a grayscale PNG image for direct use with image-based machine learning models such as Palette.",
         "topics": [
-            "starfish",
+            "crystallography",
+            "image-processing",
+            "machine-learning",
+            "materials-informatics",
             "python",
-            "spectra",
-            "astronomy",
-            "astrophysics",
-            "inference",
-            "mcmc"
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     {
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-        "avatar": "https://avatars3.githubusercontent.com/u/47640953?v=4",
-        "description": "Gene-set enrichment with math biology",
+        "uid": "github/arabic-digital-humanities/adhtools",
+        "url": "https://github.com/arabic-digital-humanities/adhtools",
+        "rel": "/software/repository/github/arabic-digital-humanities/adhtools",
+        "avatar": "https://avatars3.githubusercontent.com/u/35798486?v=4",
+        "description": "Scripts for manipulating Arabic texts",
         "topics": []
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     {
-        "uid": "github/carlosborca/CrystaLattE",
-        "url": "https://github.com/carlosborca/CrystaLattE",
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-        "avatar": "https://avatars2.githubusercontent.com/u/23508182?v=4",
-        "description": "Set of scripts to automate the calculation of crystal lattice energies.",
+        "uid": "github/FitSNAP/FitSNAP",
+        "url": "https://github.com/FitSNAP/FitSNAP",
+        "rel": "/software/repository/github/FitSNAP/FitSNAP",
+        "avatar": "https://avatars.githubusercontent.com/u/55246404?v=4",
+        "description": "Software for generating SNAP machine-learning interatomic potentials",
         "topics": []
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     {
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-        "url": "https://github.com/dunnkers/fseval",
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-        "description": "Benchmarking framework for Feature Selection and Feature Ranking algorithms \ud83d\ude80",
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-            "benchmarking",
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+        "description": "Compressed representations of opacity for radiative transfer!",
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+            "atmospheres",
+            "exoplanets",
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     {
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+        "avatar": "https://avatars.githubusercontent.com/u/35353555?v=4",
+        "description": "An open-source & modular reduction pipeline for astronomical images of point sources.",
         "topics": [
-            "rrna",
-            "alignment",
-            "sequence",
-            "16s",
-            "silva",
-            "bioinformatics"
+            "astronomy",
+            "astrophysics",
+            "python",
+            "astronomical-images",
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     {
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-        "description": "Semantic Capture of Relationships In Biological Literature (scribl) ",
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+        "avatar": "https://avatars.githubusercontent.com/u/6584368?v=4",
+        "description": "piecewise-regression (aka segmented regression) in python. For fitting straight line models to data with one or more breakpoints where the gradient changes. ",
         "topics": [
-            "computational-biology",
-            "literature-mining",
-            "network-biology",
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+            "segmented-regression",
+            "piecewise-regression",
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+            "data-analysis",
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+        "description": "Ginga products specific to STScI data analysis.",
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-        "description": "Python version of Barycorr",
-        "topics": []
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+        "description": "Exoplanet vetting",
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+            "exoplanets",
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-        "description": "Goalign is a set of command line tools and an API to manipulate multiple alignments. It is implemented in Go language.",
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+        "description": "Synthetic photometry using Astropy for HST and JWST",
         "topics": [
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-            "alignment",
-            "phylip",
-            "fasta",
-            "phylip-alignment",
-            "nexus"
+            "astronomy",
+            "python",
+            "astropy",
+            "synthetic-photometry",
+            "synphot",
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-        "url": "https://github.com/PENTACLE-Team/PENTACLE",
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-            "python",
-            "model-selection",
-            "parallel-computing",
-            "monte-carlo"
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+        "description": "Synthetic photometry using Astropy",
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+            "astronomy",
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             "python",
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-            "spectroscopy",
-            "xspec",
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+        "description": "An interactive astronomical 1D spectra analysis tool.",
         "topics": [
             "astronomy",
-            "catalogue",
-            "association",
-            "bayesian-inference",
+            "spectroscopy",
+            "viewer",
+            "data-analysis",
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         ]
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-        "url": "https://github.com/JohannesBuchner/PyMultiNest",
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-        "description": "An Open-Source End-to-End Pipeline for Spiral Magnetic Resonance Image (MRI) Reconstruction in Julia",
+        "uid": "github/spacetelescope/imexam",
+        "url": "https://github.com/spacetelescope/imexam",
+        "rel": "/software/repository/github/spacetelescope/imexam",
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+        "description": "imexam is a python tool for simple image examination, and plotting, with similar functionality to IRAF's imexamine",
         "topics": [
-            "mri",
-            "mri-brain",
-            "mri-reconstruction"
+            "astronomy",
+            "data-analysis",
+            "viewer",
+            "astropy",
+            "ds9",
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-        "url": "https://github.com/pysam-developers/pysam",
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-        "description": "Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.",
+        "uid": "github/spacetelescope/jdaviz",
+        "url": "https://github.com/spacetelescope/jdaviz",
+        "rel": "/software/repository/github/spacetelescope/jdaviz",
+        "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
+        "description": "JWST astronomical data analysis tools in the Jupyter platform",
         "topics": []
     },
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-        "url": "https://github.com/iterize/tenta",
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-        "description": "Manage your sensors remotely and in real-time",
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-            "internet-of-things",
-            "iot",
-            "mqtt",
-            "network",
-            "python",
-            "real-time",
-            "sensor"
-        ]
+        "uid": "github/spacetelescope/pystortion",
+        "url": "https://github.com/spacetelescope/pystortion",
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-        "url": "https://github.com/moscibrodzka/ipole",
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-        "description": "ipole (master, originally published), ipole-v2.0 (v2.0 is more compact with additional features). This is the original repository for the ipole code. ",
+        "uid": "github/spacetelescope/hst_cosmic_rays",
+        "url": "https://github.com/spacetelescope/hst_cosmic_rays",
+        "rel": "/software/repository/github/spacetelescope/hst_cosmic_rays",
+        "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
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         "topics": []
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-        "uid": "github/palaimon/ipyannotator",
-        "url": "https://github.com/palaimon/ipyannotator",
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-        "avatar": "https://avatars.githubusercontent.com/u/58658888?v=4",
-        "description": "the infinitely hackable annotation framework",
+        "uid": "github/spacetelescope/mirage",
+        "url": "https://github.com/spacetelescope/mirage",
+        "rel": "/software/repository/github/spacetelescope/mirage",
+        "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
+        "description": "This code can be used to generate simulated NIRCam, NIRISS, or FGS data ",
         "topics": [
-            "ipycanvas",
-            "nbdev",
-            "ipywidgets",
-            "voila",
-            "labeling",
-            "annotations",
-            "labeling-tool",
-            "annotation-tool"
+            "astronomy",
+            "simulator",
+            "nircam",
+            "niriss",
+            "fgs"
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-        "uid": "github/RozanskiT/suppnet",
-        "url": "https://github.com/RozanskiT/suppnet",
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-        "avatar": "https://avatars.githubusercontent.com/u/30845410?v=4",
-        "description": "SUPPNet: Neural network for stellar spectrum normalisation",
+        "uid": "github/spacetelescope/specview",
+        "url": "https://github.com/spacetelescope/specview",
+        "rel": "/software/repository/github/spacetelescope/specview",
+        "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
+        "description": "Archived, see https://github.com/spacetelescope/specviz for future development. Spectrum visualization, manipulation,  and fitting",
         "topics": [
             "spectroscopy",
             "astronomy",
-            "astronomy-software"
+            "viewer",
+            "data-analysis"
         ]
     },
     {
-        "uid": "github/bencebeky/spotrod",
-        "url": "https://github.com/bencebeky/spotrod",
-        "rel": "/software/repository/github/bencebeky/spotrod",
-        "avatar": "https://avatars.githubusercontent.com/u/6144440?v=4",
-        "description": "A semi-analytic model for transits of spotted stars -- C implementation and Python API",
+        "uid": "github/spacetelescope/stsdas_stripped",
+        "url": "https://github.com/spacetelescope/stsdas_stripped",
+        "rel": "/software/repository/github/spacetelescope/stsdas_stripped",
+        "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
+        "description": "STSDAS/TABLES (nonfunctional / for reference only)",
         "topics": []
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-        "uid": "github/NOSALRO/robot_dart",
-        "url": "https://github.com/NOSALRO/robot_dart",
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-        "description": "RobotDART: a versatile robot simulator for robotics and machine learning researchers",
-        "topics": [
-            "dart",
-            "magnum",
-            "eigen3"
-        ]
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+        "url": "https://github.com/low-sky/cprops",
+        "rel": "/software/repository/github/low-sky/cprops",
+        "avatar": "https://avatars.githubusercontent.com/u/1139910?v=4",
+        "description": "Rosolowsky and Leroy (2006) Algorithm",
+        "topics": []
     },
     {
-        "uid": "github/bluenote-1577/sylph",
-        "url": "https://github.com/bluenote-1577/sylph",
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-        "avatar": "https://avatars.githubusercontent.com/u/12787948?v=4",
-        "description": "ultrafast ANI querying and taxonomic profiling for metagenomic shotgun samples  by abundance-corrected minhash.",
+        "uid": "github/extendr/extendr",
+        "url": "https://github.com/extendr/extendr",
+        "rel": "/software/repository/github/extendr/extendr",
+        "avatar": "https://avatars.githubusercontent.com/u/63346977?v=4",
+        "description": "R extension library for rust designed to be familiar to R users.",
         "topics": [
-            "average-nucleotide-identity",
-            "k-mer",
-            "metagenomics",
-            "sketching-algorithm",
-            "taxonomic-classification"
+            "rust",
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-        "uid": "github/rdpstaff/TaxonomyTree",
-        "url": "https://github.com/rdpstaff/TaxonomyTree",
-        "rel": "/software/repository/github/rdpstaff/TaxonomyTree",
-        "avatar": "https://avatars.githubusercontent.com/u/2041409?v=4",
-        "description": "TaxonomyTree building and traversal utility classes.",
-        "topics": []
+        "uid": "github/PyFstat/PyFstat",
+        "url": "https://github.com/PyFstat/PyFstat",
+        "rel": "/software/repository/github/PyFstat/PyFstat",
+        "avatar": "https://avatars.githubusercontent.com/u/60369643?v=4",
+        "description": "a python package for gravitational wave analysis with the F-statistic",
+        "topics": [
+            "python3",
+            "gravitational-waves",
+            "ligo",
+            "neutron-star",
+            "virgo",
+            "gravity",
+            "astrophysics",
+            "pycuda"
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-        "uid": "github/rdpstaff/ReadSeq",
-        "url": "https://github.com/rdpstaff/ReadSeq",
-        "rel": "/software/repository/github/rdpstaff/ReadSeq",
-        "avatar": "https://avatars.githubusercontent.com/u/2041409?v=4",
-        "description": "Java based common sequence file format reader and sequence file manipulation.  Most RDP projects require this package.",
+        "uid": "github/weiliu123/PCLassoReg",
+        "url": "https://github.com/weiliu123/PCLassoReg",
+        "rel": "/software/repository/github/weiliu123/PCLassoReg",
+        "avatar": "https://avatars.githubusercontent.com/u/20275072?v=4",
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-        "uid": "github/rdpstaff/AlignmentTools",
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-        "description": "Tools for pairwise sequence comparison, distance calculation, and hidden markov model sequence scoring (using HMMER3 models).  Many RDP Projects require this package.",
+        "uid": "github/aksholokhov/pysr3",
+        "url": "https://github.com/aksholokhov/pysr3",
+        "rel": "/software/repository/github/aksholokhov/pysr3",
+        "avatar": "https://avatars.githubusercontent.com/u/6594476?v=4",
+        "description": "SciKit-Learn compatible library for training mixed-effects models.",
         "topics": []
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-        "url": "https://github.com/rdpstaff/classifier",
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-        "description": "RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s",
+        "uid": "github/laristra/flecsph",
+        "url": "https://github.com/laristra/flecsph",
+        "rel": "/software/repository/github/laristra/flecsph",
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         "topics": []
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-        "url": "https://github.com/nathanael-fijalkow/DeepSynth",
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-        "avatar": "https://avatars.githubusercontent.com/u/7555483?v=4",
-        "description": "General-purpose program synthesiser",
+        "uid": "github/bio-tools/biotoolsSum",
+        "url": "https://github.com/bio-tools/biotoolsSum",
+        "rel": "/software/repository/github/bio-tools/biotoolsSum",
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+        "description": "bio.tools interface with report generation features",
         "topics": []
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-        "avatar": "https://avatars.githubusercontent.com/u/6926916?v=4",
-        "description": "A python tool that ingests WUDAPT information into WRF.",
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+        "url": "https://github.com/dbosul/cwitools",
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+        "description": "Tools for Cosmic Web Imager Data",
         "topics": []
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-        "description": "GWecc is a C++ code that computes the pulsar timing array (PTA) signals induced by eccentric supermassive binaries.",
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+        "url": "https://github.com/bedops/bedops",
+        "rel": "/software/repository/github/bedops/bedops",
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+        "description": ":microscope: BEDOPS: high-performance genomic feature operations",
         "topics": [
-            "gravitational-waves",
-            "pulsars",
-            "binary-stars",
-            "astrophysics"
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+            "bed",
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+            "set-theory",
+            "conversion",
+            "compression",
+            "toolkit",
+            "parallel",
+            "pipeline",
+            "bioinformatics"
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-        "description": "A novel composable rootless container system",
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-            "unionfs",
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-        "description": "a Python package to simulate, solve and visualize the source-tracking POMDP",
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-            "reinforcement-learning",
-            "olfactory-search",
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+        "url": "https://github.com/YuSugihara/MutMap",
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+        "description": "MutMap pipeline to identify causative mutations responsible for a phenotype",
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             "python",
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+        "uid": "github/MartianColonist/POSEIDON",
+        "url": "https://github.com/MartianColonist/POSEIDON",
+        "rel": "/software/repository/github/MartianColonist/POSEIDON",
+        "avatar": "https://avatars.githubusercontent.com/u/22718554?v=4",
+        "description": "Multidimensional atmospheric retrieval of exoplanet spectra.",
+        "topics": []
     },
     {
-        "uid": "github/neuroanatomy/reorient",
-        "url": "https://github.com/neuroanatomy/reorient",
-        "rel": "/software/repository/github/neuroanatomy/reorient",
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-        "description": "A tool for reorienting and cropping MRI data",
-        "topics": [
-            "hacktoberfest"
-        ]
+        "uid": "github/MartianColonist/Cthulhu",
+        "url": "https://github.com/MartianColonist/Cthulhu",
+        "rel": "/software/repository/github/MartianColonist/Cthulhu",
+        "avatar": "https://avatars.githubusercontent.com/u/22718554?v=4",
+        "description": "A Python package to calculate cross sections for substellar atmospheres",
+        "topics": []
     },
     {
-        "uid": "github/healpy/healpy",
-        "url": "https://github.com/healpy/healpy",
-        "rel": "/software/repository/github/healpy/healpy",
-        "avatar": "https://avatars.githubusercontent.com/u/897950?v=4",
-        "description": "Python healpix maps tools",
+        "uid": "github/MorgansLab/OSCILOS_Long",
+        "url": "https://github.com/MorgansLab/OSCILOS_long",
+        "rel": "/software/repository/github/MorgansLab/OSCILOS_Long",
+        "avatar": "https://avatars.githubusercontent.com/u/9108767?v=4",
+        "description": "OSCILOS_long is an open source code for simulating combustion instabilities. OSCILOS_lite was developed at Imperial College London by Prof. Aimee S. Morgans and co-workers. The code is open source and written in MATLAB.",
         "topics": []
     },
     {
-        "uid": "github/DrDaveShaw/INCHEM-Py",
-        "url": "https://github.com/DrDaveShaw/INCHEM-Py",
-        "rel": "/software/repository/github/DrDaveShaw/INCHEM-Py",
-        "avatar": "https://avatars.githubusercontent.com/u/75995570?v=4",
-        "description": "The INdoor CHEMical model in Python (INCHEM-Py) is an open source and accessible box-model built to give researchers deeper insight into the chemical mechanisms behind indoor air chemistry.",
+        "uid": "github/equitable-equations/fqar",
+        "url": "https://github.com/equitable-equations/fqar",
+        "rel": "/software/repository/github/equitable-equations/fqar",
+        "avatar": "https://avatars.githubusercontent.com/u/110704949?v=4",
+        "description": "The fqar package provides R tools for downloading and analyzing floristic quality assessment data from www.universalFQA.org",
         "topics": []
     },
     {
-        "uid": "github/ZhangGroup-MITChemistry/OpenNucleome",
-        "url": "https://github.com/ZhangGroup-MITChemistry/OpenNucleome",
-        "rel": "/software/repository/github/ZhangGroup-MITChemistry/OpenNucleome",
-        "avatar": "https://avatars.githubusercontent.com/u/38541214?v=4",
-        "description": "OpenNucleome is an open-source software designed for conducting molecular dynamics (MD) simulations of the human nucleus. This software streamlines the process of setting up whole nucleus simulations through just a few lines of Python scripting.",
+        "uid": "github/martinfleis/clustergram",
+        "url": "https://github.com/martinfleis/clustergram",
+        "rel": "/software/repository/github/martinfleis/clustergram",
+        "avatar": "https://avatars.githubusercontent.com/u/36797143?v=4",
+        "description": "Clustergram - Visualization and diagnostics for cluster analysis in Python",
         "topics": []
     },
     {
-        "uid": "github/climate-machine/Oceananigans.jl",
-        "url": "https://github.com/CliMA/Oceananigans.jl",
-        "rel": "/software/repository/github/climate-machine/Oceananigans.jl",
-        "avatar": "https://avatars0.githubusercontent.com/u/43161188?v=4",
-        "description": "\ud83c\udf0a Fast and friendly fluid dynamics on CPUs and GPUs",
+        "uid": "github/LangeLab/SQuAPP",
+        "url": "https://github.com/LangeLab/SQuAPP",
+        "rel": "/software/repository/github/LangeLab/SQuAPP",
+        "avatar": "https://avatars.githubusercontent.com/u/22403445?v=4",
+        "description": "Shiny App allows streamlined analysis of multiple levels of proteomics data.",
         "topics": [
-            "climate",
-            "ocean",
-            "fluid-dynamics",
-            "julia",
-            "gpu",
-            "climate-change"
+            "shiny",
+            "proteomics",
+            "peptidomics",
+            "interactive-apps",
+            "data-analysis",
+            "bioinformatics-tool"
         ]
     },
     {
-        "uid": "github/uedaLabR/nanoDoc",
-        "url": "https://github.com/uedaLabR/nanoDoc",
-        "rel": "/software/repository/github/uedaLabR/nanoDoc",
-        "avatar": "https://avatars.githubusercontent.com/u/70622849?v=4",
-        "description": "RNA modification detection using Nanopore raw reads with Deep One Class classification",
+        "uid": "github/ianvcaldas/smalldisco",
+        "url": "https://github.com/ianvcaldas/smalldisco",
+        "rel": "/software/repository/github/ianvcaldas/smalldisco",
+        "avatar": "https://avatars.githubusercontent.com/u/22592759?v=4",
+        "description": "Discovery of siRNA regions and small RNA tail quantification",
         "topics": []
     },
     {
-        "uid": "github/sanger-pathogens/Artemis",
-        "url": "https://github.com/sanger-pathogens/Artemis",
-        "rel": "/software/repository/github/sanger-pathogens/Artemis",
-        "avatar": "https://avatars.githubusercontent.com/u/130803?v=4",
-        "description": "Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation",
+        "uid": "github/amrex-astro/Castro",
+        "url": "https://github.com/AMReX-Astro/Castro",
+        "rel": "/software/repository/github/amrex-astro/Castro",
+        "avatar": "https://avatars1.githubusercontent.com/u/28324385?v=4",
+        "description": "An adaptive mesh, astrophysical compressible (radiation-, magneto-)  hydrodynamics simulation code for massively parallel CPU and GPU architectures.",
         "topics": [
-            "genomics",
-            "sequencing",
-            "next-generation-sequencing",
-            "research",
-            "bioinformatics",
-            "bioinformatics-pipeline",
-            "global-health",
-            "infectious-diseases",
-            "pathogen"
+            "hydrodynamics",
+            "cfd",
+            "pde",
+            "gravity",
+            "radiation",
+            "castro",
+            "amr",
+            "adaptive-mesh-refinement",
+            "reactions",
+            "astrophysical-simulation",
+            "astrophysics"
         ]
     },
     {
-        "uid": "github/sanger-pathogens/Bio-Tradis",
-        "url": "https://github.com/sanger-pathogens/Bio-Tradis",
-        "rel": "/software/repository/github/sanger-pathogens/Bio-Tradis",
-        "avatar": "https://avatars.githubusercontent.com/u/130803?v=4",
-        "description": "A set of tools to analyse the output from TraDIS analyses",
+        "uid": "github/amrex-astro/MAESTRO",
+        "url": "https://github.com/AMReX-Astro/MAESTRO",
+        "rel": "/software/repository/github/amrex-astro/MAESTRO",
+        "avatar": "https://avatars.githubusercontent.com/u/28324385?v=4",
+        "description": "A low Mach number stellar hydrodynamics code",
         "topics": [
-            "genomics",
-            "sequencing",
-            "next-generation-sequencing",
-            "research",
-            "bioinformatics",
-            "bioinformatics-pipeline",
-            "global-health",
-            "infectious-diseases",
-            "pathogen"
+            "hydrodynamics",
+            "reactions",
+            "cfd",
+            "pde",
+            "low-mach",
+            "amr",
+            "adaptive-mesh-refinement",
+            "maestro",
+            "astrophysics",
+            "astrophysical-simulation",
+            "simulation"
         ]
     },
     {
-        "uid": "github/sanger-pathogens/ariba",
-        "url": "https://github.com/sanger-pathogens/ariba",
-        "rel": "/software/repository/github/sanger-pathogens/ariba",
-        "avatar": "https://avatars.githubusercontent.com/u/130803?v=4",
-        "description": "Antimicrobial Resistance Identification By Assembly",
-        "topics": [
-            "genomics",
-            "sequencing",
-            "next-generation-sequencing",
-            "research",
-            "bioinformatics",
-            "bioinformatics-pipeline",
-            "global-health",
-            "infectious-diseases",
-            "pathogen"
-        ]
+        "uid": "github/amrex-astro/Nyx",
+        "url": "https://github.com/AMReX-Astro/Nyx",
+        "rel": "/software/repository/github/amrex-astro/Nyx",
+        "avatar": "https://avatars.githubusercontent.com/u/28324385?v=4",
+        "description": "An adaptive mesh, N-body hydro cosmological simulation code",
+        "topics": []
     },
     {
-        "uid": "github/sanger-pathogens/circlator",
-        "url": "https://github.com/sanger-pathogens/circlator",
-        "rel": "/software/repository/github/sanger-pathogens/circlator",
-        "avatar": "https://avatars.githubusercontent.com/u/130803?v=4",
-        "description": "Circlator is a tool to circularize genome assemblies. The input is a genome assembly in FASTA format and corrected PacBio or nanopore reads in FASTA or FASTQ format. Circlator will attempt to identify each circular sequence and output a linearised version of it. It does this by assembling all reads that map to contig ends and comparing the resulting contigs with the input assembly.",
-        "topics": [
-            "genomics",
-            "sequencing",
-            "next-generation-sequencing",
-            "research",
-            "bioinformatics",
-            "bioinformatics-pipeline",
-            "global-health",
-            "infectious-diseases",
-            "pathogen"
-        ]
+        "uid": "github/CPM-project/MCPM",
+        "url": "https://github.com/CPM-project/MCPM",
+        "rel": "/software/repository/github/CPM-project/MCPM",
+        "avatar": "https://avatars.githubusercontent.com/u/32932681?v=4",
+        "description": "Modified CPM method",
+        "topics": []
     },
     {
-        "uid": "github/sanger-pathogens/assembly-stats",
-        "url": "https://github.com/sanger-pathogens/assembly-stats",
-        "rel": "/software/repository/github/sanger-pathogens/assembly-stats",
-        "avatar": "https://avatars.githubusercontent.com/u/130803?v=4",
-        "description": "Get assembly statistics from FASTA and FASTQ files",
+        "uid": "github/paulbrodersen/netgraph",
+        "url": "https://github.com/paulbrodersen/netgraph",
+        "rel": "/software/repository/github/paulbrodersen/netgraph",
+        "avatar": "https://avatars.githubusercontent.com/u/8046146?v=4",
+        "description": "Publication-quality network visualisations in python",
         "topics": [
-            "genomics",
-            "sequencing",
-            "next-generation-sequencing",
-            "research",
-            "bioinformatics",
-            "global-health",
-            "infectious-diseases",
-            "pathogen"
+            "network",
+            "visualization",
+            "network-analysis",
+            "publication-quality-plots",
+            "graph",
+            "graph-tool",
+            "igraph",
+            "matplotlib",
+            "network-science",
+            "networkx",
+            "python"
         ]
     },
     {
-        "uid": "github/sanger-pathogens/snp-sites",
-        "url": "https://github.com/sanger-pathogens/snp-sites",
-        "rel": "/software/repository/github/sanger-pathogens/snp-sites",
-        "avatar": "https://avatars.githubusercontent.com/u/130803?v=4",
-        "description": "Finds SNP sites from a multi-FASTA alignment file",
-        "topics": [
-            "genomics",
-            "sequencing",
-            "next-generation-sequencing",
-            "research",
-            "bioinformatics",
-            "bioinformatics-pipeline",
-            "global-health",
-            "infectious-diseases",
-            "pathogen"
-        ]
+        "uid": "github/nlesc-ave/ave-rest-service",
+        "url": "https://github.com/nlesc-ave/ave-rest-service",
+        "rel": "/software/repository/github/nlesc-ave/ave-rest-service",
+        "avatar": "https://avatars0.githubusercontent.com/u/15281028?v=4",
+        "description": "visualize (clustered) single-nucleotide variants across genomes",
+        "topics": []
     },
     {
-        "uid": "github/sanger-pathogens/pymummer",
-        "url": "https://github.com/sanger-pathogens/pymummer",
-        "rel": "/software/repository/github/sanger-pathogens/pymummer",
-        "avatar": "https://avatars.githubusercontent.com/u/130803?v=4",
-        "description": "Python3 module for running MUMmer and reading the output",
+        "uid": "github/ToyotaCRDL/mahos",
+        "url": "https://github.com/ToyotaCRDL/mahos",
+        "rel": "/software/repository/github/ToyotaCRDL/mahos",
+        "avatar": "https://avatars.githubusercontent.com/u/91861326?v=4",
+        "description": "Measurement Automation Handling and Orchestration System",
         "topics": []
     },
     {
-        "uid": "github/sanger-pathogens/gubbins",
-        "url": "https://github.com/nickjcroucher/gubbins",
-        "rel": "/software/repository/github/sanger-pathogens/gubbins",
-        "avatar": "https://avatars.githubusercontent.com/u/16579395?v=4",
-        "description": "Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins",
-        "topics": [
-            "genomics",
-            "sequencing",
-            "next-generation-sequencing",
-            "research",
-            "bioinformatics",
-            "bioinformatics-pipeline",
-            "global-health",
-            "infectious-diseases",
-            "pathogen"
-        ]
+        "uid": "github/CosmoLike/CosmoCov",
+        "url": "https://github.com/CosmoLike/CosmoCov",
+        "rel": "/software/repository/github/CosmoLike/CosmoCov",
+        "avatar": "https://avatars.githubusercontent.com/u/24500384?v=4",
+        "description": "Configuration Space Covariances for Projected Galaxy 2-Point Statistics",
+        "topics": []
     },
     {
-        "uid": "github/sanger-pathogens/Fastaq",
-        "url": "https://github.com/sanger-pathogens/Fastaq",
-        "rel": "/software/repository/github/sanger-pathogens/Fastaq",
-        "avatar": "https://avatars.githubusercontent.com/u/130803?v=4",
-        "description": "Python3 scripts to manipulate FASTA and FASTQ files",
-        "topics": [
-            "genomics",
-            "sequencing",
-            "next-generation-sequencing",
-            "research",
-            "bioinformatics",
-            "global-health",
-            "infectious-diseases",
-            "pathogen"
-        ]
+        "uid": "github/bertrandplez/Turbospectrum2019",
+        "url": "https://github.com/bertrandplez/Turbospectrum2019",
+        "rel": "/software/repository/github/bertrandplez/Turbospectrum2019",
+        "avatar": "https://avatars.githubusercontent.com/u/30231362?v=4",
+        "description": "synthetic spectrum calculation companion to MARCS",
+        "topics": []
     },
     {
-        "uid": "github/sanger-pathogens/Roary",
-        "url": "https://github.com/sanger-pathogens/Roary",
-        "rel": "/software/repository/github/sanger-pathogens/Roary",
-        "avatar": "https://avatars.githubusercontent.com/u/130803?v=4",
-        "description": "Rapid large-scale prokaryote pan genome analysis",
+        "uid": "github/bertrandplez/Turbospectrum_NLTE",
+        "url": "https://github.com/bertrandplez/Turbospectrum_NLTE",
+        "rel": "/software/repository/github/bertrandplez/Turbospectrum_NLTE",
+        "avatar": "https://avatars.githubusercontent.com/u/30231362?v=4",
+        "description": "Turbospectrum v20 with NLTE capability",
+        "topics": []
+    },
+    {
+        "uid": "github/Gaiana/nirdust",
+        "url": "https://github.com/Gaiana/nirdust",
+        "rel": "/software/repository/github/Gaiana/nirdust",
+        "avatar": "https://avatars.githubusercontent.com/u/71792014?v=4",
+        "description": "Nirdust is a python package that uses K-band (2.2 micrometers) spectra to measure the temperature of the dust heated by a type 2 Active Galactic Nuclei (AGN) accretion disk.",
         "topics": [
-            "genomics",
-            "sequencing",
-            "next-generation-sequencing",
-            "research",
-            "bioinformatics",
-            "bioinformatics-pipeline",
-            "global-health",
-            "infectious-diseases",
-            "pathogen"
+            "spectra",
+            "dust",
+            "agn",
+            "astronomy",
+            "galaxies"
         ]
     },
     {
-        "uid": "github/sanger-pathogens/iva",
-        "url": "https://github.com/sanger-pathogens/iva",
-        "rel": "/software/repository/github/sanger-pathogens/iva",
-        "avatar": "https://avatars.githubusercontent.com/u/130803?v=4",
-        "description": "de novo virus assembler of Illumina paired reads",
+        "uid": "github/bmvdgeijn/WASP",
+        "url": "https://github.com/bmvdgeijn/WASP",
+        "rel": "/software/repository/github/bmvdgeijn/WASP",
+        "avatar": "https://avatars.githubusercontent.com/u/3441538?v=4",
+        "description": "WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery",
+        "topics": []
+    },
+    {
+        "uid": "github/FePhyFoFum/phyx",
+        "url": "https://github.com/FePhyFoFum/phyx",
+        "rel": "/software/repository/github/FePhyFoFum/phyx",
+        "avatar": "https://avatars.githubusercontent.com/u/3589956?v=4",
+        "description": "phylogenetics tools for linux (and other mostly posix compliant) computers",
         "topics": [
-            "genomics",
-            "sequencing",
-            "next-generation-sequencing",
-            "research",
-            "bioinformatics",
-            "bioinformatics-pipeline",
-            "global-health",
-            "infectious-diseases",
-            "pathogen"
+            "phylogenetics",
+            "molecular-evolution",
+            "simulation"
         ]
     },
     {
-        "uid": "github/bancaditalia/black-it",
-        "url": "https://github.com/bancaditalia/black-it",
-        "rel": "/software/repository/github/bancaditalia/black-it",
-        "avatar": "https://avatars.githubusercontent.com/u/14347148?v=4",
-        "description": "Black-box abm calibration kit by the Bank of Italy",
+        "uid": "github/introlab/opentera",
+        "url": "https://github.com/introlab/opentera",
+        "rel": "/software/repository/github/introlab/opentera",
+        "avatar": "https://avatars.githubusercontent.com/u/1263458?v=4",
+        "description": "OpenTera - Open TeleRehabilitation Server and Micro-Services",
         "topics": [
-            "agent-based-modeling",
-            "calibration-toolbox"
+            "python",
+            "server",
+            "healthcare",
+            "iot",
+            "telerehabilitation",
+            "telepresence",
+            "videoconference",
+            "micro-services",
+            "webrtc",
+            "redis",
+            "flask",
+            "twisted",
+            "robotics"
         ]
     },
     {
-        "uid": "github/BobChallen/Basic-mzml-plotter",
-        "url": "https://github.com/BobChallen/Basic-mzml-plotter",
-        "rel": "/software/repository/github/BobChallen/Basic-mzml-plotter",
-        "avatar": "https://avatars.githubusercontent.com/u/122879668?v=4",
-        "description": "A very basic mzml file plotting program that can plot single scans, merge all scans from a file, plot the TIC, and plot an EIC of a chosen m/z value.",
+        "uid": "github/rgerum/pylustrator",
+        "url": "https://github.com/rgerum/pylustrator",
+        "rel": "/software/repository/github/rgerum/pylustrator",
+        "avatar": "https://avatars0.githubusercontent.com/u/14153051?v=4",
+        "description": "Visualisations of data are at the core of every publication of scientific research results. They have to be as clear as possible to facilitate the communication of research. As data can have different formats and shapes, the visualisations often have to be adapted to reflect the data as well as possible. We developed Pylustrator, an interface to directly edit python generated matplotlib graphs to finalize them for publication. Therefore, subplots can be resized and dragged around by the mouse, text and annotations can be added. The changes can be saved to the initial plot file as python code.",
         "topics": [
-            "mass-spectrometry",
-            "massspectrometry",
-            "mzml",
-            "mzml-files",
-            "plotting-in-python"
+            "matplotlib",
+            "gui",
+            "code-generation",
+            "interactive",
+            "visualisation"
         ]
     },
     {
-        "uid": "github/edwardoughton/itmlogic",
-        "url": "https://github.com/edwardoughton/itmlogic",
-        "rel": "/software/repository/github/edwardoughton/itmlogic",
-        "avatar": "https://avatars0.githubusercontent.com/u/11899151?v=4",
-        "description": "Longley-Rice Irregular Terrain Model (itmlogic)",
+        "uid": "github/jdiasn/lidarSuit",
+        "url": "https://github.com/jdiasn/lidarSuit",
+        "rel": "/software/repository/github/jdiasn/lidarSuit",
+        "avatar": "https://avatars.githubusercontent.com/u/11823854?v=4",
+        "description": "Archived. Please check https://github.com/jdiasn/lidarwind",
         "topics": []
     },
     {
-        "uid": "github/nuc-astro/winnet",
-        "url": "https://github.com/nuc-astro/WinNet",
-        "rel": "/software/repository/github/nuc-astro/winnet",
-        "avatar": "https://avatars.githubusercontent.com/u/35767561?v=4",
-        "description": "The WinNet nuclear reaction network",
+        "uid": "github/sbraden/circle-craters",
+        "url": "https://github.com/sbraden/circle-craters",
+        "rel": "/software/repository/github/sbraden/circle-craters",
+        "avatar": "https://avatars.githubusercontent.com/u/1332595?v=4",
+        "description": "A planetary science crater-counting plugin for QGIS ",
+        "topics": []
+    },
+    {
+        "uid": "github/KerryAM-R/ggVolcanoR",
+        "url": "https://github.com/KerryAM-R/ggVolcanoR",
+        "rel": "/software/repository/github/KerryAM-R/ggVolcanoR",
+        "avatar": "https://avatars.githubusercontent.com/u/83262343?v=4",
+        "description": null,
+        "topics": []
+    },
+    {
+        "uid": "github/jfowkes/pycutest",
+        "url": "https://github.com/jfowkes/pycutest",
+        "rel": "/software/repository/github/jfowkes/pycutest",
+        "avatar": "https://avatars.githubusercontent.com/u/5586192?v=4",
+        "description": "Python interface to CUTEst",
         "topics": [
-            "astrophysics",
-            "codes",
-            "nuclear-physics"
+            "optimization-tools"
         ]
     },
     {
-        "uid": "github/COINtoolbox/ActSNClass",
-        "url": "https://github.com/COINtoolbox/ActSNClass",
-        "rel": "/software/repository/github/COINtoolbox/ActSNClass",
-        "avatar": "https://avatars.githubusercontent.com/u/8449310?v=4",
-        "description": "Active Learning for SN photometric classification",
+        "uid": "github/dingshandeng/diskmint",
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-        "description": "A forward-modeling tool for constraining surface maps orbital parameters of exoplanets from time-resolved photometry",
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+        "description": "ASSIST is a software package for ephemeris-quality integrations of test particles.",
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-            "julia",
-            "machine-learning",
-            "markov-chain",
-            "statistics",
-            "time-series",
-            "data-science"
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-        "url": "https://github.com/tensorflow/tensorflow",
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-        "description": "An Open Source Machine Learning Framework for Everyone",
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+        "description": "How heavy are Neutron Stars in binary systems within our Galaxy? A demonstration of how bayesian inference and nested sampling allows us to explore the mass distributions of Galactic Double Neutron Star systems.",
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-            "tensorflow",
-            "machine-learning",
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+        "description": "Quality Control Pipeline Server for quantitative Proteomics",
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+        "description": "A python package for creating mock maps of astrophysical signals from a halo catalog",
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-        "description": "A Bayesian inference framework to constrain kilonova models.",
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+        "description": "Python package for streamlined analysis of sports data.",
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+        "description": "PiLSL is a pairwise interaction learning-based graph neural network (GNN) model for prediction of synthetic lethality (SL) as anti-cancer drug targets. It learns the representation of pairwise interaction between two genes from a knowledge graph (KG).",
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+            "bioinformatics",
+            "data-science",
+            "drug-discovery",
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+        ]
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-        "description": "A Binary Collision Approximation (BCA) code for arbitrary ion-material interactions",
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+        "description": "A Python package for working with electrochemical impedance data",
         "topics": [
-            "binary-collision-approximation",
-            "ion-solid-interactions",
-            "plasma-material-interactions",
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-            "simulation",
-            "yamamura",
-            "bohdansky",
-            "nuclear-stopping",
-            "electronic-stopping"
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+            "battery",
+            "electrochemistry",
+            "fuel-cell",
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-        "description": "Fortran 2003 code to generate molecular spectra, partition functions, lifetimes, cooling functions etc  using ExoMol line lists",
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+        "description": "ChiantiPy is a python package to calculate the radiative properties of astrophysical plasmas based on the CHIANTI atomic database",
         "topics": [
-            "physics",
+            "python",
+            "chianti-atomic-database",
+            "chianti",
             "spectroscopy",
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-        "description": "Theoretical ROVibrational Energies: A variational program for accurate nuclear motion calculations",
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+        "avatar": "https://avatars.githubusercontent.com/u/30488853?v=4",
+        "description": "Spherical and Conic Cosmic Web Finders with Extended SCMS Algorithms",
         "topics": []
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-        "description": "Duo is a diatomic code for solving a fully coupled rovibronic Schroedinger equation",
+        "uid": "github/IBM/topography-searcher",
+        "url": "https://github.com/IBM/topography-searcher",
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+        "description": "This Python package is designed for mapping the solution space of machine learning models. An understanding of the organisation of the solution space can answer important questions about the reproducibility, explainability and performance of ML methods.",
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-        "description": "Fast predictions for the matter power spectrum.",
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-        "description": "Utilities for BAT instrument on the Neil Gehrels Swift Observatory satellite",
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+        "description": "An R package for simulating RNA-sequence datasets from regulatory networks",
         "topics": []
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-        "description": "Performance portable equations of state and mixed cell closures",
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+        "avatar": "https://avatars.githubusercontent.com/u/48588661?v=4",
+        "description": "Find causal cell-types underlying complex trait genetics",
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-        "description": "Scientific Computational Imaging COde",
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+        "avatar": "https://avatars.githubusercontent.com/u/33265555?v=4",
+        "description": "Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.",
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-            "plug-and-play-priors",
-            "jax",
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-            "proximal-algorithms",
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+            "single-cell-rna-seq",
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-        "description": "An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuristic optimization algorithms, and an adaptive Markov chain Monte Carlo (MCMC) sampling algorithm.",
+        "uid": "github/drphilmarshall/Pangloss",
+        "url": "https://github.com/drphilmarshall/Pangloss",
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+        "description": "Line of sight mass reconstruction in the Universe",
         "topics": []
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-        "url": "https://github.com/lanl/GLUE",
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-        "description": "Generic Learning User Enablement Code",
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-        "description": "Software for biomolecular electrostatics and solvation calculations",
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+        "description": "COSMIC (Compact Object Synthesis and Monte Carlo Investigation Code)",
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         "topics": [
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+        "description": "python package implementing a multivariate Horner scheme for efficiently evaluating multivariate polynomials ",
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+        "uid": "github/ICESat2-SlideRule/paper",
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-        "description": "Framework to describe the performance of high-energy neutrino detectors",
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+        "rel": "/software/repository/github/kegiljarhus/pyBEMT",
+        "avatar": "https://avatars3.githubusercontent.com/u/19799448?v=4",
+        "description": "Implementation of the Blade Element Momentum Theory for turbines and propellers in Python",
         "topics": []
     },
     {
-        "uid": "github/rgerum/pylustrator",
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+        "uid": "github/jrkerns/pylinac",
+        "url": "https://github.com/jrkerns/pylinac",
+        "rel": "/software/repository/github/jrkerns/pylinac",
+        "avatar": "https://avatars.githubusercontent.com/u/4803336?v=4",
+        "description": "A TG-142 toolkit for doing routine linear accelerator quality assurance",
         "topics": [
-            "matplotlib",
-            "gui",
-            "code-generation",
-            "interactive",
-            "visualisation"
+            "python",
+            "medical-physics",
+            "radiation-oncology"
         ]
     },
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-        "uid": "github/AlgoLab/shark",
-        "url": "https://github.com/AlgoLab/shark",
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-        "description": "Mapping-free filtering of irrelevant RNA-Seq reads",
-        "topics": [
-            "bioinformatics",
-            "rna-seq",
-            "alignment-free",
-            "filtering"
-        ]
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+        "url": "https://github.com/atchekho/harmpi",
+        "rel": "/software/repository/github/atchekho/harmpi",
+        "avatar": "https://avatars.githubusercontent.com/u/8141298?v=4",
+        "description": "3D massively parallel general relativictic MHD code HARMPI",
+        "topics": []
     },
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-        "uid": "github/ConorMacBride/mcalf",
-        "url": "https://github.com/ConorMacBride/mcalf",
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-        "avatar": "https://avatars.githubusercontent.com/u/25007832?v=4",
-        "description": "MCALF: Multi-Component Atmospheric Line Fitting",
+        "uid": "github/souzamonteiro/cnatool",
+        "url": "https://github.com/souzamonteiro/cnatool",
+        "rel": "/software/repository/github/souzamonteiro/cnatool",
+        "avatar": "https://avatars.githubusercontent.com/u/723670?v=4",
+        "description": "Complex Network Analysis Tool",
         "topics": []
     },
     {
-        "uid": "github/online-behaviour/machine-learning",
-        "url": "https://github.com/online-behaviour/machine-learning",
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-        "avatar": "https://avatars3.githubusercontent.com/u/26790167?v=4",
-        "description": "Python scripts for tweet retrieval and machine learning in the eScience project Automated Analysis of Online Behaviour on Social Media",
+        "uid": "github/vmalnathnambiar/exfilms",
+        "url": "https://github.com/vmalnathnambiar/exfilms",
+        "rel": "/software/repository/github/vmalnathnambiar/exfilms",
+        "avatar": "https://avatars.githubusercontent.com/u/104112048?v=4",
+        "description": "A cross-platform, command line interface tool to extract mass spectrometry data from mzML formatted files, with filtering capabilities.",
+        "topics": [
+            "data-extraction",
+            "mass-spectrometry",
+            "spectrum-filtering",
+            "command-line-tool",
+            "data-standardisation",
+            "open-source"
+        ]
+    },
+    {
+        "uid": "github/forceflow1049/phast",
+        "url": "https://github.com/forceflow1049/PhAst",
+        "rel": "/software/repository/github/forceflow1049/phast",
+        "avatar": "https://avatars.githubusercontent.com/u/1127046?v=4",
+        "description": "PhAst: A flexible IDL astronomical image viewer",
         "topics": []
     },
     {
-        "uid": "github/online-behaviour/find-journalists",
-        "url": "https://github.com/online-behaviour/find-journalists",
-        "rel": "/software/repository/github/online-behaviour/find-journalists",
-        "avatar": "https://avatars3.githubusercontent.com/u/26790167?v=4",
+        "uid": "github/smeingast/PNICER",
+        "url": "https://github.com/smeingast/PNICER",
+        "rel": "/software/repository/github/smeingast/PNICER",
+        "avatar": "https://avatars.githubusercontent.com/u/4977153?v=4",
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         "topics": []
     },
     {
-        "uid": "github/TBLabFJD/DBofAFs",
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-        "rel": "/software/repository/github/TBLabFJD/DBofAFs",
-        "avatar": "https://avatars.githubusercontent.com/u/48798983?v=4",
-        "description": "Pipeline for database creation of allele frequencies ",
+        "uid": "github/ivadomed/ivadomed",
+        "url": "https://github.com/ivadomed/ivadomed",
+        "rel": "/software/repository/github/ivadomed/ivadomed",
+        "avatar": "https://avatars.githubusercontent.com/u/67157284?v=4",
+        "description": "Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.",
         "topics": []
     },
     {
-        "uid": "github/skovaka/UNCALLED",
-        "url": "https://github.com/skovaka/UNCALLED",
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-        "avatar": "https://avatars.githubusercontent.com/u/1577544?v=4",
-        "description": "Raw nanopore signal mapper that enables real-time targeted sequencing",
+        "uid": "github/fzagaria/COpops",
+        "url": "https://github.com/fzagaria/COpops",
+        "rel": "/software/repository/github/fzagaria/COpops",
+        "avatar": "https://avatars.githubusercontent.com/u/124464817?v=4",
+        "description": "A Jupyter notebook with a simple class to compute CO sizes and fluxes using the semi-analytical method developed by Zagaria et al. (2023b).",
+        "topics": [
+            "interferometry",
+            "jupyter-notebook",
+            "modelling",
+            "population-synthesis",
+            "protoplanetary-discs",
+            "python"
+        ]
+    },
+    {
+        "uid": "github/xszhu-lab/AGImpute",
+        "url": "https://github.com/xszhu-lab/AGImpute",
+        "rel": "/software/repository/github/xszhu-lab/AGImpute",
+        "avatar": "https://avatars.githubusercontent.com/u/65640906?v=4",
+        "description": "A composite structure model for single-cell RNA-seq imputation",
         "topics": []
     },
     {
-        "uid": "github/genner-lab/meta-fish-lib",
-        "url": "https://github.com/genner-lab/meta-fish-lib",
-        "rel": "/software/repository/github/genner-lab/meta-fish-lib",
-        "avatar": "https://avatars.githubusercontent.com/u/74772033?v=4",
-        "description": "A generalised, dynamic DNA reference library for metabarcoding of fishes",
+        "uid": "github/ratt-ru/montblanc",
+        "url": "https://github.com/ratt-ru/montblanc",
+        "rel": "/software/repository/github/ratt-ru/montblanc",
+        "avatar": "https://avatars.githubusercontent.com/u/7933570?v=4",
+        "description": "GPU-accelerated RIME implementations. An offshoot of the BIRO projects, and one of the foothills of Mt Exaflop.",
         "topics": []
     },
     {
-        "uid": "github/storyofthewolf/ExoRT",
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-        "avatar": "https://avatars.githubusercontent.com/u/19943455?v=4",
-        "description": "radiative transfer code, designed for use with CESM/CAM",
+        "uid": "github/ratt-ru/solarkat",
+        "url": "https://github.com/ratt-ru/solarkat",
+        "rel": "/software/repository/github/ratt-ru/solarkat",
+        "avatar": "https://avatars.githubusercontent.com/u/7933570?v=4",
+        "description": "MeerKAT as a solar telescope",
         "topics": []
     },
     {
-        "uid": "github/storyofthewolf/ExoCAM",
-        "url": "https://github.com/storyofthewolf/ExoCAM",
-        "rel": "/software/repository/github/storyofthewolf/ExoCAM",
-        "avatar": "https://avatars.githubusercontent.com/u/19943455?v=4",
-        "description": null,
+        "uid": "github/ratt-ru/PyMORESANE",
+        "url": "https://github.com/ratt-ru/PyMORESANE",
+        "rel": "/software/repository/github/ratt-ru/PyMORESANE",
+        "avatar": "https://avatars.githubusercontent.com/u/7933570?v=4",
+        "description": "Repository for the Python version of the MORESANE deconvolution algorithm",
         "topics": []
     },
     {
-        "uid": "github/ethicsai/ethical-smart-grid",
-        "url": "https://github.com/ethicsai/ethical-smart-grid",
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-        "avatar": "https://avatars.githubusercontent.com/u/113445198?v=4",
-        "description": "Reinforcement learning environment for learning ethical behaviours in a SmartGrid use-case.",
+        "uid": "github/ratt-ru/codex-africanus",
+        "url": "https://github.com/ratt-ru/codex-africanus",
+        "rel": "/software/repository/github/ratt-ru/codex-africanus",
+        "avatar": "https://avatars.githubusercontent.com/u/7933570?v=4",
+        "description": "Radio Astronomy Algorithms Library",
         "topics": [
-            "ai-ethics",
-            "artificial-intelligence",
-            "gym-environment",
-            "machine-ethics",
+            "radio-astronomy",
             "python",
-            "reinforcement-learning",
-            "smart-grid"
+            "numba",
+            "dask"
         ]
     },
     {
-        "uid": "github/davidkipping/MAH",
-        "url": "https://github.com/davidkipping/MAH",
-        "rel": "/software/repository/github/davidkipping/MAH",
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-        "description": "Calculate the posterior distribution of the \"minimum atmospheric height\" (MAH) of an exoplanet by inputting the joint posterior distribution of the mass and radius.",
-        "topics": []
+        "uid": "github/ratt-ru/Stimela-classic",
+        "url": "https://github.com/ratt-ru/Stimela-classic",
+        "rel": "/software/repository/github/ratt-ru/Stimela-classic",
+        "avatar": "https://avatars.githubusercontent.com/u/7933570?v=4",
+        "description": "Containerized radio interferometry scripting framework -- NB: Classic version is no longer in active development, use stimela 2! See README for details.",
+        "topics": [
+            "pipelines",
+            "astronomical-algorithms",
+            "workflow-management"
+        ]
     },
     {
-        "uid": "github/davidkipping/flicker",
-        "url": "https://github.com/davidkipping/flicker",
-        "rel": "/software/repository/github/davidkipping/flicker",
-        "avatar": "https://avatars.githubusercontent.com/u/12749250?v=4",
-        "description": null,
+        "uid": "github/ratt-ru/rodrigues",
+        "url": "https://github.com/ratt-ru/rodrigues",
+        "rel": "/software/repository/github/ratt-ru/rodrigues",
+        "avatar": "https://avatars.githubusercontent.com/u/7933570?v=4",
+        "description": "web based radio telescope calibration simulation",
         "topics": []
     },
     {
-        "uid": "github/davidkipping/inversebeta",
-        "url": "https://github.com/davidkipping/inversebeta",
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-        "avatar": "https://avatars.githubusercontent.com/u/12749250?v=4",
-        "description": "Inverse transform sampler of the Beta distribution",
+        "uid": "github/ratt-ru/CubiCal",
+        "url": "https://github.com/ratt-ru/CubiCal",
+        "rel": "/software/repository/github/ratt-ru/CubiCal",
+        "avatar": "https://avatars.githubusercontent.com/u/7933570?v=4",
+        "description": "A fast radio interferometric calibration suite.",
         "topics": []
     },
     {
-        "uid": "github/davidkipping/MACULA",
-        "url": "https://github.com/davidkipping/MACULA",
-        "rel": "/software/repository/github/davidkipping/MACULA",
-        "avatar": "https://avatars.githubusercontent.com/u/12749250?v=4",
-        "description": null,
+        "uid": "github/ratt-ru/breizorro",
+        "url": "https://github.com/ratt-ru/breizorro",
+        "rel": "/software/repository/github/ratt-ru/breizorro",
+        "avatar": "https://avatars.githubusercontent.com/u/7933570?v=4",
+        "description": "Image masking tool(s) possibly of Breton spiritual origin",
         "topics": []
     },
     {
-        "uid": "github/davidkipping/LDC3",
-        "url": "https://github.com/davidkipping/LDC3",
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-        "avatar": "https://avatars.githubusercontent.com/u/12749250?v=4",
-        "description": null,
-        "topics": []
+        "uid": "github/ratt-ru/dask-ms",
+        "url": "https://github.com/ratt-ru/dask-ms",
+        "rel": "/software/repository/github/ratt-ru/dask-ms",
+        "avatar": "https://avatars.githubusercontent.com/u/7933570?v=4",
+        "description": "Implementation of a dask/xarray dataset backed by a CASA MS",
+        "topics": [
+            "dask",
+            "casacore",
+            "radio-astronomy",
+            "xarray"
+        ]
     },
     {
-        "uid": "github/davidkipping/ECCSAMPLES",
-        "url": "https://github.com/davidkipping/ECCSAMPLES",
-        "rel": "/software/repository/github/davidkipping/ECCSAMPLES",
-        "avatar": "https://avatars.githubusercontent.com/u/12749250?v=4",
-        "description": "Sample from an informative prior to enforce a realistic prior on parameters such as the orbital eccentricity of an extrasolar planet. This is done by evaluating the inverse cumulative density function of the prior distribution.",
+        "uid": "github/ratt-ru/QuartiCal",
+        "url": "https://github.com/ratt-ru/QuartiCal",
+        "rel": "/software/repository/github/ratt-ru/QuartiCal",
+        "avatar": "https://avatars.githubusercontent.com/u/7933570?v=4",
+        "description": "CubiCal, but with greater power.",
         "topics": []
     },
     {
-        "uid": "github/nhurleywalker/fits_warp",
-        "url": "https://github.com/nhurleywalker/fits_warp",
-        "rel": "/software/repository/github/nhurleywalker/fits_warp",
-        "avatar": "https://avatars.githubusercontent.com/u/8326966?v=4",
-        "description": "Warp catalogues and images to dedistort the effects of the ionosphere",
+        "uid": "github/ratt-ru/smops",
+        "url": "https://github.com/ratt-ru/smops",
+        "rel": "/software/repository/github/ratt-ru/smops",
+        "avatar": "https://avatars.githubusercontent.com/u/7933570?v=4",
+        "description": "Interpolate FITS model images over higher frequency intervals",
         "topics": []
     },
     {
-        "uid": "github/geza-kovacs/tran_k2",
-        "url": "https://github.com/geza-kovacs/tran_k2",
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-        "avatar": "https://avatars.githubusercontent.com/u/72140288?v=4",
-        "description": "Planetary transit search in the presence of stellar variability and instrumental systematics",
-        "topics": []
+        "uid": "github/ratt-ru/Stimela",
+        "url": "https://github.com/ratt-ru/Stimela",
+        "rel": "/software/repository/github/ratt-ru/Stimela",
+        "avatar": "https://avatars.githubusercontent.com/u/7933570?v=4",
+        "description": "A containerized radio interferometry scripting framework",
+        "topics": [
+            "pipelines",
+            "astronomical-algorithms",
+            "workflow-management"
+        ]
     },
     {
-        "uid": "github/ABM4ALL/Melodie",
-        "url": "https://github.com/ABM4ALL/Melodie",
-        "rel": "/software/repository/github/ABM4ALL/Melodie",
-        "avatar": "https://avatars.githubusercontent.com/u/88455886?v=4",
-        "description": "A general framework for developing agent-based models in Python.",
+        "uid": "github/ratt-ru/eidos",
+        "url": "https://github.com/ratt-ru/eidos",
+        "rel": "/software/repository/github/ratt-ru/eidos",
+        "avatar": "https://avatars.githubusercontent.com/u/7933570?v=4",
+        "description": "Modelling primary beams of radio astronomy antennas",
         "topics": []
     },
     {
-        "uid": "github/DebduttaPaul/luminosity_function_of_sGRBs",
-        "url": "https://github.com/DebduttaPaul/luminosity_function_of_sGRBs",
-        "rel": "/software/repository/github/DebduttaPaul/luminosity_function_of_sGRBs",
-        "avatar": "https://avatars.githubusercontent.com/u/20395873?v=4",
-        "description": "This is a repository containing databases and scripts for short GRB luminosity function work.",
+        "uid": "github/mrilikecoding/StreamPoseML",
+        "url": "https://github.com/mrilikecoding/StreamPoseML",
+        "rel": "/software/repository/github/mrilikecoding/StreamPoseML",
+        "avatar": "https://avatars.githubusercontent.com/u/3507761?v=4",
+        "description": "pose estimation / ML model wrapper and annotation utility",
         "topics": []
     },
     {
-        "uid": "github/DebduttaPaul/luminosity_function_of_lGRBs",
-        "url": "https://github.com/DebduttaPaul/luminosity_function_of_lGRBs",
-        "rel": "/software/repository/github/DebduttaPaul/luminosity_function_of_lGRBs",
-        "avatar": "https://avatars.githubusercontent.com/u/20395873?v=4",
-        "description": null,
+        "uid": "github/NeamulKabir/EnsembleFam",
+        "url": "https://github.com/NeamulKabir/EnsembleFam",
+        "rel": "/software/repository/github/NeamulKabir/EnsembleFam",
+        "avatar": "https://avatars.githubusercontent.com/u/9514340?v=4",
+        "description": "EnsembleFam: Towards a more accurate protein function prediction in twilight zone",
         "topics": []
     },
     {
-        "uid": "github/dh4gan/grapus",
-        "url": "https://github.com/dh4gan/grapus",
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-        "avatar": "https://avatars.githubusercontent.com/u/2436460?v=4",
-        "description": "Population synthesis of self-gravitating disc fragmentation and tidal downsizing in protostellar discs",
+        "uid": "github/Computational-NeuroGenetics/deMeta-beta",
+        "url": "https://github.com/Computational-NeuroGenetics/deMeta-beta",
+        "rel": "/software/repository/github/Computational-NeuroGenetics/deMeta-beta",
+        "avatar": "https://avatars.githubusercontent.com/u/69991253?v=4",
+        "description": null,
         "topics": []
     },
     {
-        "uid": "github/dh4gan/taktent",
-        "url": "https://github.com/dh4gan/taktent",
-        "rel": "/software/repository/github/dh4gan/taktent",
-        "avatar": "https://avatars.githubusercontent.com/u/2436460?v=4",
-        "description": "A Python framework for agent-based simulations of (radio) SETI observations",
-        "topics": [
-            "seti",
-            "agent-based",
-            "simulator",
-            "extraterrestrial",
-            "intelligence"
-        ]
+        "uid": "github/ouyang-lab/PRAS",
+        "url": "https://github.com/ouyang-lab/PRAS",
+        "rel": "/software/repository/github/ouyang-lab/PRAS",
+        "avatar": "https://avatars2.githubusercontent.com/u/44652339?v=4",
+        "description": "PRAS: predicting functional targets of RNA binding proteins based on CLIP-seq peaks",
+        "topics": []
     },
     {
-        "uid": "github/dh4gan/oberon",
-        "url": "https://github.com/dh4gan/oberon",
-        "rel": "/software/repository/github/dh4gan/oberon",
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-        "description": "This C++ code models the climate of Earthlike planets under the effects of an arbitrary number and arrangement of other bodies, such as stars, planets and moons.",
-        "topics": [
-            "climate",
-            "planet",
-            "star",
-            "astrophysics",
-            "simulation"
-        ]
+        "uid": "github/DrJieZheng/meanoffset",
+        "url": "https://github.com/DrJieZheng/meanoffset",
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-        "avatar": "https://avatars.githubusercontent.com/u/2436460?v=4",
-        "description": "TensoriAl Classification of Hydrodynamic Elements",
+        "uid": "github/sbi-dev/sbi",
+        "url": "https://github.com/sbi-dev/sbi",
+        "rel": "/software/repository/github/sbi-dev/sbi",
+        "avatar": "https://avatars.githubusercontent.com/u/141135423?v=4",
+        "description": "Simulation-based inference toolkit",
         "topics": [
-            "sph",
-            "simulation",
-            "tensor",
-            "hydrodynamics"
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-        "description": "Measurements and emulation of Lagrangian bias models for clustering and lensing cross-correlations.",
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-        "description": "Simulation-Based Inference (SBI) using forward modeled galaxy photometry",
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+        "description": "We solve hydrodynamical equation including self-gravitating using Physics Informed Neural Networks. We study Jeans instability in self-gravitating gas in star forming molecular clouds",
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     },
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-        "description": "python package to measure power spectrum and bispectrum",
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+        "description": "toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files",
         "topics": [
-            "cosmology",
-            "astrostatistics"
+            "dna-sequences",
+            "compression",
+            "filesystem",
+            "fuse-filesystem",
+            "fasta",
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-        "description": "PRObabilistic Value-Added Bright Galaxy Survey (PROVABGS)",
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+        "description": "CARMA Data Reduction Pipeline",
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-        "uid": "github/PathoGenOmics-Lab/get_mnv",
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-        "description": "Identifies multiple SNVs within the same codon, reclassifies them as MNVs, and accurately computes resulting amino acid changes from genomic reads",
+        "uid": "github/donaldRwilliams/BGGM",
+        "url": "https://github.com/donaldRwilliams/BGGM",
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+        "description": "Bayesian Gaussian Graphical Models",
         "topics": [
-            "mnv",
-            "snv",
-            "annotation",
-            "bam",
-            "rust",
-            "snp",
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-        "description": "Simple Manipulation Of Trees",
+        "uid": "github/donaldRwilliams/GGMnonreg",
+        "url": "https://github.com/donaldRwilliams/GGMnonreg",
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-        "avatar": "https://avatars.githubusercontent.com/u/63723568?v=4",
-        "description": "A python library for petrophysical calculations.",
+        "uid": "github/athob/py-ananke",
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+        "rel": "/software/repository/github/athob/py-ananke",
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+        "description": "Python pipeline to generate mock astrometric and photometric catalogs of synthetic stars derived from particle-based simulated star populations",
         "topics": []
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-        "uid": "github/Wang-Ruihui/A-live-homogeneous-database-of-solar-active-regions",
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-        "description": "This is a live homogeneous database of solar active regions (ARs).  It's produced by an automatic detection method of AR.",
+        "uid": "github/WilliamLwj/PyXAB",
+        "url": "https://github.com/WilliamLwj/PyXAB",
+        "rel": "/software/repository/github/WilliamLwj/PyXAB",
+        "avatar": "https://avatars.githubusercontent.com/u/28475711?v=4",
+        "description": "PyXAB - A Python Library for X-Armed Bandit and Online Blackbox Optimization Algorithms",
         "topics": [
-            "image-processing",
-            "detection-of-solar-active-regions",
-            "solar-active-region-database"
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+            "bandit-algorithms",
+            "blackbox-optimization",
+            "optimization",
+            "lipschitz-bandit",
+            "hyperparameter-optimization",
+            "hyperparameter-tuning",
+            "reinforcement-learning",
+            "data-science",
+            "machine-learning-algorithms",
+            "online-learning",
+            "continuous-armed-bandit",
+            "x-armed-bandit",
+            "automl",
+            "machine-learning",
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-        "uid": "github/Imperial-visualizations/Physics-Visualizations",
-        "url": "https://github.com/Imperial-visualizations/Physics-Visualizations",
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-        "description": "A computational project at Imperial College London to develop interactive visualizations for education.",
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-        "description": "This python package can perform automated mineral compositional analysis on debris disk spectra. It will determine which minerals are present and what their relative abundances are within the debris disk. This code is used in a paper that has been submitted to the American Journal of Undergraduate Research (AJUR), titled \"An Unbiased Mineral Compositional Analysis Technique for Debris Disks\" by Yung Kipreos and Dr. Inseok Song..",
+        "uid": "github/emrecdem/emo-spectre",
+        "url": "https://github.com/emrecdem/emo-spectre",
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-        "url": "https://github.com/pierrebarbera/epa-ng",
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-        "avatar": "https://avatars.githubusercontent.com/u/6584572?v=4",
-        "description": "Massively parallel phylogenetic placement of genetic sequences",
+        "uid": "github/sebhoof/SolarAxionFlux",
+        "url": "https://github.com/sebhoof/SolarAxionFlux",
+        "rel": "/software/repository/github/sebhoof/SolarAxionFlux",
+        "avatar": "https://avatars.githubusercontent.com/u/15237674?v=4",
+        "description": "A C++/Python library for calculating the solar axion flux for different solar models and opacity codes.",
         "topics": [
-            "phylogenetics",
-            "bioinformatics",
-            "taxonomic-classification",
-            "mpi",
-            "openmp",
-            "mpi-io",
-            "placement"
+            "physics",
+            "sun",
+            "axions",
+            "helioscopes",
+            "alps"
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-        "uid": "github/devries/analytic_infall",
-        "url": "https://github.com/devries/analytic_infall",
-        "rel": "/software/repository/github/devries/analytic_infall",
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-        "description": "Analytic 1-D radiative transfer model of blue-asymmetric spectral line profiles from infalling molecular clouds. The model is presented in the paper, \"Molecular Line Profile Fitting with Analytic Radiative Transfer Models\" by De Vries & Myers (2005).",
+        "uid": "github/ArnaudCassan/microlensing",
+        "url": "https://github.com/ArnaudCassan/microlensing",
+        "rel": "/software/repository/github/ArnaudCassan/microlensing",
+        "avatar": "https://avatars.githubusercontent.com/u/25842440?v=4",
+        "description": "Gravitational microlensing",
         "topics": [
-            "radiative-transfer",
-            "c",
-            "star-formation",
-            "interstellar-medium"
+            "microlensing",
+            "astronomy",
+            "numerical-computation",
+            "caustics",
+            "critical-curves"
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     {
-        "uid": "github/DeepMIALab/UC-NfNet",
-        "url": "https://github.com/DeepMIALab/UC-NfNet",
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-        "avatar": "https://avatars.githubusercontent.com/u/82269830?v=4",
-        "description": null,
+        "uid": "github/fitbenchmarking/fitbenchmarking",
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+        "avatar": "https://avatars.githubusercontent.com/u/49585251?v=4",
+        "description": "Tool for comparing the run time and accuracy of minimizers on fit benchmarking problems",
         "topics": []
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     {
-        "uid": "github/Ge-Lab/USAT",
-        "url": "https://github.com/Ge-Lab/USAT",
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-        "description": "USAT is a software for analyzing and visualizing the Tandem Repeat (TR) alleles",
-        "topics": []
+        "uid": "github/exoplanet-dev/exoplanet",
+        "url": "https://github.com/exoplanet-dev/exoplanet",
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+        "avatar": "https://avatars.githubusercontent.com/u/60150744?v=4",
+        "description": "Fast & scalable MCMC for all your exoplanet needs! ",
+        "topics": [
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+            "exoplanet-transits",
+            "exoplanet-radial-velocities",
+            "mcmc",
+            "gaussian-processes",
+            "bayesian-inference",
+            "pymc3",
+            "time-series",
+            "time-series-analysis",
+            "astronomy",
+            "astrophysics",
+            "exoplanets"
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-        "uid": "github/greendw/AntabGMVA",
-        "url": "https://github.com/greendw/AntabGMVA",
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-        "avatar": "https://avatars.githubusercontent.com/u/93199958?v=4",
-        "description": "A Python tool for managing GMVA metadata",
+        "uid": "github/exoplanet-dev/celerite2",
+        "url": "https://github.com/exoplanet-dev/celerite2",
+        "rel": "/software/repository/github/exoplanet-dev/celerite2",
+        "avatar": "https://avatars.githubusercontent.com/u/60150744?v=4",
+        "description": "Fast & scalable Gaussian Processes in one dimension",
         "topics": []
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     {
-        "uid": "github/darthoctopus/reggae",
-        "url": "https://github.com/darthoctopus/reggae",
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-        "avatar": "https://avatars.githubusercontent.com/u/5761408?v=4",
-        "description": "pbjam for dipole modes",
+        "uid": "github/alixlam/fmristroke",
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+        "rel": "/software/repository/github/alixlam/fmristroke",
+        "avatar": "https://avatars.githubusercontent.com/u/60109304?v=4",
+        "description": "Adding quality checks and confounds computation steps to fmriprep for stroke data.",
         "topics": []
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-        "uid": "github/matthewholman/assist",
-        "url": "https://github.com/matthewholman/assist",
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-        "description": "ASSIST is a software package for ephemeris-quality integrations of test particles.",
-        "topics": [
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-            "n-body",
-            "planetary-science"
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-        "avatar": "https://avatars.githubusercontent.com/u/42988626?v=4",
-        "description": "RNA structural motif finder",
+        "uid": "github/tldr-group/taufactor",
+        "url": "https://github.com/tldr-group/taufactor",
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+        "avatar": "https://avatars.githubusercontent.com/u/78808638?v=4",
+        "description": "TauFactor is a parallelised solver for calculating tortuosity factors from voxel data.",
         "topics": []
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     {
-        "uid": "github/pfeinsper/drone-swarm-search",
-        "url": "https://github.com/pfeinsper/drone-swarm-search",
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-        "avatar": "https://avatars.githubusercontent.com/u/81260905?v=4",
-        "description": "The Drone Swarm Search project provides an environment for SAR missions built on PettingZoo, where agents, represented by drones, are tasked with locating targets identified as shipwrecked individuals.",
+        "uid": "github/tldr-group/samba-web",
+        "url": "https://github.com/tldr-group/samba-web",
+        "rel": "/software/repository/github/tldr-group/samba-web",
+        "avatar": "https://avatars.githubusercontent.com/u/78808638?v=4",
+        "description": "Local version of samba-web, a trainable segmentation web app with deep learning powered labelling",
         "topics": [
-            "pettingzoo",
-            "rl",
-            "ai",
-            "pygame",
-            "python",
-            "multi-agent-reinforcement-learning",
-            "multiagent-reinforcement-learning"
+            "materials-science",
+            "segment-anything-model",
+            "segmentation",
+            "webapp"
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-        "uid": "github/AstraZeneca/kallisto",
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-        "description": "Efficiently calculate 3D-atomic/molecular features for quantitative structure-activity relationship approaches.",
+        "uid": "github/ramadatta/CPgeneProfiler",
+        "url": "https://github.com/ramadatta/CPgeneProfiler",
+        "rel": "/software/repository/github/ramadatta/CPgeneProfiler",
+        "avatar": "https://avatars3.githubusercontent.com/u/3212461?v=4",
+        "description": "CPgeneProfiler R package repository",
         "topics": [
-            "chemistry",
-            "computational-chemistry",
-            "machinelearning",
-            "quantum-chemistry"
+            "carbapenamase-genes",
+            "genome-assemblies",
+            "cp-gene",
+            "ncbi-blast",
+            "assembly-size",
+            "cocarriage"
         ]
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-        "uid": "github/dirostri/CREPE",
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-        "description": "GitHub Repository for CREPE: A tool for Transcription Factor Cataloguing",
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-        "avatar": "https://avatars.githubusercontent.com/u/43447097?v=4",
-        "description": "C Library for handling CEP packet data from an international LOFAR station",
+        "uid": "github/aewallin/allantools",
+        "url": "https://github.com/aewallin/allantools",
+        "rel": "/software/repository/github/aewallin/allantools",
+        "avatar": "https://avatars.githubusercontent.com/u/909509?v=4",
+        "description": "Allan deviation and related time & frequency statistics library in Python",
         "topics": []
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-        "url": "https://github.com/pynbody/pynbody",
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-        "description": "N-body and hydro analysis tools for Python 3. (Older versions support Python 2.)",
-        "topics": []
+        "uid": "github/coder/code-server",
+        "url": "https://github.com/coder/code-server",
+        "rel": "/software/repository/github/coder/code-server",
+        "avatar": "https://avatars.githubusercontent.com/u/95932066?v=4",
+        "description": "VS Code in the browser",
+        "topics": [
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+            "vscode-remote",
+            "ide",
+            "remote-work",
+            "development-environment",
+            "dev-tools",
+            "browser-ide"
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-        "url": "https://github.com/pynbody/genetIC",
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-        "avatar": "https://avatars.githubusercontent.com/u/4417908?v=4",
-        "description": "The GM initial conditions generator",
+        "uid": "github/ComputationalPhysiology/simcardems",
+        "url": "https://github.com/ComputationalPhysiology/simcardems",
+        "rel": "/software/repository/github/ComputationalPhysiology/simcardems",
+        "avatar": "https://avatars.githubusercontent.com/u/48671306?v=4",
+        "description": "Simula Cardiac ElectroMechanics Solver",
         "topics": []
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-        "url": "https://github.com/pynbody/tangos",
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-        "description": "The Agile Numerical Galaxy Organisation System",
+        "uid": "github/dftd3/simple-dftd3",
+        "url": "https://github.com/dftd3/simple-dftd3",
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+        "avatar": "https://avatars.githubusercontent.com/u/104521936?v=4",
+        "description": "Library first implementation of the D3 dispersion correction",
         "topics": [
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-            "cosmology",
-            "simulation"
+            "quantum-chemistry",
+            "dispersion-correction",
+            "ase",
+            "computational-chemistry",
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-        "description": "Shear Optimization with ShOpt.jl, a julia package for empirical point spread function characterizations",
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-        "description": "small RNA analysis from NGS data",
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+        "description": "Fast and flexible physics-based battery models in Python",
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-            "single-cell-rna-seq",
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+        "description": "Initial Conditions for Isolated CoLlisionless systEms",
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-        "description": "A Python library for performing local gradient clustering (LGC) based sharpened dimensionality reduction (SDR).",
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-        "description": "A Python library for performing local gradient clustering (LGC) based SHArpened dimensionality Reduction (SDR) and Classification.",
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+        "description": "Compare the structure of two netCDF files at the command line",
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-        "description": "C# template-based photometric redshift estimation framework",
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+        "description": "The NASA Prognostic Model Package is a Python framework focused on defining and building models for prognostics (computation of remaining useful life) of engineering systems, and provides a set of prognostics models for select components developed within this framework, suitable for use in prognostics applications for these components.",
         "topics": [
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+            "prognostics",
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+        "description": "Kepler K2 Cadence Events (K2CE) is a Python data visualization and manipulation tool for astronomers to identify and remove cadences (observations) associated with problematic thruster events, thus producing cleaner light curves.  K2CE was designed to work with standard Kepler or K2 data products: long-cadence (30 min) and short-cadence (1 min) light curve files and long-cadence and short-cadence target pixel files.  The tool has been modified to work with light curve files and target pixel files from the TESS mission.",
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-        "description": "DTWC++",
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-            "dynamic-time-warping",
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-        "avatar": "https://avatars.githubusercontent.com/u/7339712?v=4",
-        "description": "a toolkit for Dynamic Analysis of Nucleosome and Protein Occupancy by Sequencing.",
+        "uid": "github/nasa/Kamodo",
+        "url": "https://github.com/nasa/Kamodo",
+        "rel": "/software/repository/github/nasa/Kamodo",
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         "topics": []
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-        "uid": "github/adamjermyn/Skye",
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-        "avatar": "https://avatars.githubusercontent.com/u/6233759?v=4",
-        "description": "A differentiable equation of state",
+        "uid": "github/insilicomedicine/GENTRL",
+        "url": "https://github.com/insilicomedicine/GENTRL",
+        "rel": "/software/repository/github/insilicomedicine/GENTRL",
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+        "description": "Generative Tensorial Reinforcement Learning (GENTRL) model",
         "topics": []
     },
     {
-        "uid": "github/jeetsukumaran/DendroPy",
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-        "avatar": "https://avatars.githubusercontent.com/u/26183?v=4",
-        "description": "A Python library for phylogenetic scripting, simulation, data processing and manipulation.",
+        "uid": "github/aL3x-O-o-Hung/CAT-Net",
+        "url": "https://github.com/aL3x-O-o-Hung/CAT-Net",
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-        "uid": "github/oliveirara/polyMV",
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-        "description": "Python package that converts multipolar coefficients into Multipole Vectors and Fr\u00e9chet Vectors",
+        "uid": "github/ledatelescope/bifrost",
+        "url": "https://github.com/ledatelescope/bifrost",
+        "rel": "/software/repository/github/ledatelescope/bifrost",
+        "avatar": "https://avatars.githubusercontent.com/u/9952818?v=4",
+        "description": "A stream processing framework for high-throughput applications.",
         "topics": [
-            "cosmology",
-            "multipole-vectors",
-            "frechet-vectors"
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+            "cpp",
+            "bifrost",
+            "high-throughput-computing",
+            "high-performance-computing",
+            "astronomy",
+            "radio-astronomy",
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-        "url": "https://github.com/AndreinaCastillo/Genie_manuscript_data_analysis",
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-        "description": "A post sequencing QC tool for Oxford Nanopore sequencers",
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+        "description": "Astronomy plugins for Taverna Workbench",
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-        "description": "Software for simulating interacting galaxies using a restricted three-body approximation",
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+        "url": "https://github.com/leonzheng2/efficient-butterfly",
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         "topics": []
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-        "description": "Estimating volume density of dense insterstellar clouds based on column density maps.",
+        "uid": "github/andresGranadosC/GalRotpy",
+        "url": "https://github.com/andresGranadosC/GalRotpy",
+        "rel": "/software/repository/github/andresGranadosC/GalRotpy",
+        "avatar": "https://avatars.githubusercontent.com/u/24868453?v=4",
+        "description": "A Python-based tool to parametrize the rotation curve and the gravitational potential of disk-like galaxies",
         "topics": []
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     {
-        "uid": "github/carpenterphysics/DarkFlux",
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-        "avatar": "https://avatars.githubusercontent.com/u/36904752?v=4",
-        "description": "DarkFlux is a tool to compute Dark Matter the Dark Matter annihilation spectrum in Next Generation Dark Matter Models",
+        "uid": "github/cullanhowlett/l-picola",
+        "url": "https://github.com/CullanHowlett/l-picola",
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+        "avatar": "https://avatars.githubusercontent.com/u/5528370?v=4",
+        "description": "A public repository for the code L-PICOLA",
         "topics": []
     },
     {
-        "uid": "github/percolator/percolator",
-        "url": "https://github.com/percolator/percolator",
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-        "description": "Semi-supervised learning for peptide identification from shotgun proteomics datasets ",
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+        "uid": "github/glenco/lensed",
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+        "description": "forward reconstruction of lenses and sources from strong lensing observations",
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+            "gravitational-lensing",
+            "astrophysics",
+            "opencl",
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     {
-        "uid": "github/dcouvin/CRISPRCasFinder",
-        "url": "https://github.com/dcouvin/CRISPRCasFinder",
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-        "avatar": "https://avatars.githubusercontent.com/u/12830930?v=4",
-        "description": "A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences",
+        "uid": "github/d-tear/SIAL",
+        "url": "https://github.com/d-tear/SIAL",
+        "rel": "/software/repository/github/d-tear/SIAL",
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+        "description": "Simple Image Analysis Library",
         "topics": []
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-        "url": "https://github.com/healytwin1/HISS",
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-        "avatar": "https://avatars.githubusercontent.com/u/11073757?v=4",
-        "description": "HI Stacking Software",
+        "uid": "github/darthoctopus/reggae",
+        "url": "https://github.com/darthoctopus/reggae",
+        "rel": "/software/repository/github/darthoctopus/reggae",
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+        "description": "pbjam for dipole modes",
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     {
-        "uid": "github/ThomasEdwardRiley/xpsi-pre-transfer",
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-        "description": "X-PSI: X-ray Pulse Simulation and Inference",
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+        "url": "https://github.com/ggobi/ggobi",
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-        "avatar": "https://avatars.githubusercontent.com/u/113201176?v=4",
-        "description": "Compilation of thermo-physical properties for lead/bismuth-based liquid metals for fast reactor technology",
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+        "description": "Proper Image utils for astronomy. ",
         "topics": [
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-            "nuclear-reactor",
-            "thermodynamic-properties"
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+            "image-processing",
+            "coaad-images",
+            "psf-estimation",
+            "astronomy",
+            "zogy",
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-        "description": "Method to determine if a brown dwarf is a candidate to be a photometric variable or not, by means of the study of spectral indices.",
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+        "description": "feATURE eXTRACTOR FOR tIME sERIES",
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-        "description": "Docker CLI package for the vantage6 infrastructure",
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+        "description": "AtomNeb - Python Package for Atomic Data of Ionized Nebulae",
         "topics": [
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-            "multi-party-computation",
-            "data-science",
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+            "atomic-datasets",
+            "recombination-lines",
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-        "description": "Comparative Genomics Toolkit 3",
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         "topics": [
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-        "description": "a bioinformatics tool that helps analyze RNA-seq data, providing base-to-base alignment BAM files, transcript abundance estimation, and fusion gene detection.",
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-        "description": "ALVA is a MATLAB-package for advanced pavement modeling that is highly adaptive",
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-        "description": "A package for converting irregularly spaced time series, such as eletronic health records, into statically shaped dataframes. ",
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+        "url": "https://github.com/ADAH-EviDENce/evidence",
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-            "machine-learning",
-            "time-series-analysis",
-            "irregular-time-series",
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+        "description": "XNAT in Python",
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-        "uid": "github/miracum/ahd2fhir",
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-        "description": "A REST service for mapping text analysis results from Averbis Health Discovery to FHIR resources.",
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+        "description": "GiNaC Differential Equation Solver",
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-        "description": "This is the official repository of the open-source Open Infra Platform software (as of April 2020).",
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+        "url": "https://github.com/mariapetro/LeHaMoC",
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+        "avatar": "https://avatars.githubusercontent.com/u/34586264?v=4",
+        "description": "Leptonic-Hadronic Modeling Code for High-Energy Astrophysical Sources",
         "topics": [
-            "ifc",
-            "infrastructure",
-            "boost",
-            "point-cloud",
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-        "uid": "github/EpistasisLab/regens",
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-        "description": "Recombines real genomic segments to simulate whole genomes",
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+        "url": "https://github.com/openjournals/joss",
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+        "avatar": "https://avatars3.githubusercontent.com/u/9032431?v=4",
+        "description": "The Journal of Open Source Software",
         "topics": [
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+            "open-access",
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+            "scientific-software",
+            "publishing",
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-            "random-forest",
-            "gradient-boosting",
-            "feature-engineering",
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+        "description": "Data reduction pipeline for e-MERLIN",
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-        "description": "TransHLA: A hybrid transformer model for peptide-HLA epitope detection.",
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-        "description": "A code to compute the non-linear evolution of the cosmological matter density contrast.",
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+        "avatar": "https://avatars.githubusercontent.com/u/2392819?v=4",
+        "description": "EPyT: An EPANET-Python Toolkit for Smart Water Network Simulations",
         "topics": [
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             "simulation",
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-        "description": "A semi-numerical code to generate the Epoch of Reionization (EoR) neutral Hydrogen (HI) field.",
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+            "hydrology-stormwater-analysis",
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-        "description": "A code to identify the location and size of the gravitationally collapsed dark matter halos.",
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+        "description": "MetaPred: Meta-Learning for Clinical Risk Prediction with Limited Patient Electronic Health Records (KDD 2019)",
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+        "description": "A reproducible massively parallel IO library for hierarchical data",
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-        "description": "Robust ML in Astro",
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+        "uid": "github/ismael-mendoza/ShapeMeasurementFisherFormalism",
+        "url": "https://github.com/ismael-mendoza/ShapeMeasurementFisherFormalism",
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+        "avatar": "https://avatars.githubusercontent.com/u/11745764?v=4",
+        "description": "Fisher Formalism for Weak Lensing using 1 or 2 Galsim galaxies.",
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-        "description": "Python Scripts for Data Reduction and Analysis",
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+        "description": "Excimontec is an open-source KMC simulation software package for modeling the optoelectronic processes in organic semiconductor materials and devices, such as OPVs, OLEDs, and more. ",
         "topics": [
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+        "description": "This package helps with downloading GaiaDR2 data and gives approximate completeness maps over the sky and per G magntude bin. It also has a function to query the GDR2 RVS sample selection function.",
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+        "topics": []
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-        "url": "https://github.com/BjoernBiltzinger/pyspi",
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-        "topics": [
-            "spi-data",
-            "python",
-            "3ml"
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-        "uid": "github/sid-krish/Rhometa_Full_Genome",
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-            "arduino",
-            "arduino-library",
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+        "description": "A package for simulating of a single dish radio telescope survey",
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-        "description": "Package for analysing and characterising gravitational wave data in python",
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-            "python",
-            "gravitational-waves",
-            "gwpy",
-            "gpl"
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-        "description": "Various programs related to interstellar medium (ISM) studies",
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-        "description": "Automatic Isophotal solutions for galaxy images",
-        "topics": []
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+        "avatar": "https://avatars.githubusercontent.com/u/16811010?v=4",
+        "description": "anTraX: high throughput tracking of color-tagged insects",
+        "topics": [
+            "video-tracking",
+            "behavioral-tracking",
+            "collective-behavior",
+            "social-behavior",
+            "social-insects",
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+            "machine-vision",
+            "machine-learning",
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+        "uid": "github/Azeret/galIMF",
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-        "description": "The official implementation for the SIMBSIG package",
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+        "description": "MAss-Radius DIaGRAm with Sliders",
         "topics": []
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-        "description": "software for UCE (and general) phylogenomics",
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+        "description": "set of tools for continuum fitting, correlation function calculation, cosmological fits...",
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-        "description": "A web application providing high level functionalities to perform data reduction on scientific FITS images.",
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+        "description": "Data Assimilation with Python: a Package for Experimental Research",
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+        "description": "a toolset designed for the processing and analysis of eCLIP/iCLIP dataset",
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-            "python",
-            "planetary-science",
-            "ephemerides"
+            "bioinformatics",
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+        "uid": "github/acerbilab/pybads",
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+        "description": "PyBADS: Bayesian Adaptive Direct Search optimization algorithm for model fitting in Python",
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-            "deep-learning",
-            "cosmology",
-            "spherical-harmonics",
-            "sphere",
-            "tensorflow",
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+            "log-likelihood",
+            "noiseless-functions",
+            "noisy-functions",
+            "optimization-algorithms",
+            "python"
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-        "uid": "github/jgducoin/galclaim",
-        "url": "https://github.com/jgducoin/galclaim",
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-        "description": "GALaxy Chance of Local Alignment algorIthM",
+        "uid": "github/AstroUGent/shadowfax",
+        "url": "https://github.com/AstroUGent/shadowfax",
+        "rel": "/software/repository/github/AstroUGent/shadowfax",
+        "avatar": "https://avatars.githubusercontent.com/u/16303138?v=4",
+        "description": "A public moving mesh hydrodynamical integration code, including gravity and a collisionless component.",
         "topics": []
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     {
-        "uid": "github/inpefess/gym-saturation",
-        "url": "https://github.com/inpefess/gym-saturation",
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-        "avatar": "https://avatars.githubusercontent.com/u/1696493?v=4",
-        "description": "an OpenAI Gym environment for saturation provers",
+        "uid": "github/U-Alberta/ADaPT-ML",
+        "url": "https://github.com/U-Alberta/ADaPT-ML",
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-        "uid": "github/ylab-hi/ScanExitronLR",
-        "url": "https://github.com/ylab-hi/ScanExitronLR",
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-        "description": "A package for the characterization and quantification of exitron splicing events in long-read RNA-seq",
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-            "bioinformatics-tool",
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+        "url": "https://github.com/MarkMageeAstro/Riddler",
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-        "avatar": "https://avatars1.githubusercontent.com/u/1780988?v=4",
-        "description": "The C++ Standard Library for Parallelism and Concurrency",
+        "uid": "github/simonsobs/nemo",
+        "url": "https://github.com/simonsobs/nemo",
+        "rel": "/software/repository/github/simonsobs/nemo",
+        "avatar": "https://avatars.githubusercontent.com/u/22817890?v=4",
+        "description": "Millimeter-wave map filtering and Sunyaev-Zel'dovich galaxy cluster/source detection package. Originally developed for the Atacama Cosmology Telescope project.",
         "topics": [
-            "c-plus-plus",
-            "distributed",
-            "cross-platform",
-            "parallelism",
-            "concurrency",
-            "cpp"
+            "astrophysics",
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         ]
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     {
-        "uid": "github/STEllAR-GROUP/octotiger",
-        "url": "https://github.com/STEllAR-GROUP/octotiger",
-        "rel": "/software/repository/github/STEllAR-GROUP/octotiger",
-        "avatar": "https://avatars.githubusercontent.com/u/1780988?v=4",
-        "description": "Astrophysics program simulating the evolution of star systems based on the fast multipole method on adaptive Octrees",
+        "uid": "github/simonsobs/pixell",
+        "url": "https://github.com/simonsobs/pixell",
+        "rel": "/software/repository/github/simonsobs/pixell",
+        "avatar": "https://avatars.githubusercontent.com/u/22817890?v=4",
+        "description": "A rectangular pixel map manipulation and harmonic analysis library derived from Sigurd Naess' enlib.",
         "topics": [
-            "astrophysics",
-            "hpx",
-            "cuda-kernels",
-            "cuda",
-            "stellar-mergers"
+            "cosmology",
+            "image-processing",
+            "astrophysics"
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     {
-        "uid": "github/tne-lab/py-behav-box-v2",
-        "url": "https://github.com/tne-lab/py-behav-box-v2",
-        "rel": "/software/repository/github/tne-lab/py-behav-box-v2",
-        "avatar": "https://avatars.githubusercontent.com/u/30088789?v=4",
-        "description": "Pybehave is an open source software interface and framework for controlling behavioral experiments in neuroscience and psychology.",
+        "uid": "github/simonsobs/so_noise_models",
+        "url": "https://github.com/simonsobs/so_noise_models",
+        "rel": "/software/repository/github/simonsobs/so_noise_models",
+        "avatar": "https://avatars.githubusercontent.com/u/22817890?v=4",
+        "description": "Simons Observatory N(ell) noise models for public release",
         "topics": []
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-        "uid": "github/Yida-Lin/libxdf",
-        "url": "https://github.com/xdf-modules/libxdf",
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-        "description": "C++ library for loading XDF files",
-        "topics": [
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-            "sigviewer"
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+        "uid": "github/simonsobs/mnms",
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+        "rel": "/software/repository/github/simonsobs/mnms",
+        "avatar": "https://avatars.githubusercontent.com/u/22817890?v=4",
+        "description": "Generate map-based noise models and noise simulations.",
+        "topics": []
     },
     {
-        "uid": "github/saphir746/BiobankRead-Bash",
-        "url": "https://github.com/saphir746/BiobankRead-Bash",
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-        "avatar": "https://avatars.githubusercontent.com/u/11505614?v=4",
-        "description": "Python scripts to extract and pre-process UKB data",
+        "uid": "github/sdnjly/WSDL-AD",
+        "url": "https://github.com/sdnjly/WSDL-AD",
+        "rel": "/software/repository/github/sdnjly/WSDL-AD",
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-        "uid": "github/tzhu-bio/UMI-ATAC-seq",
-        "url": "https://github.com/tzhu-bio/UMI-ATAC-seq",
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-        "avatar": "https://avatars.githubusercontent.com/u/54537420?v=4",
-        "description": null,
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+        "url": "https://github.com/COSIMA/regional-mom6",
+        "rel": "/software/repository/github/COSIMA/regional-mom6",
+        "avatar": "https://avatars.githubusercontent.com/u/12704607?v=4",
+        "description": "Automatic generation of regional configurations of the Modular Ocean Model 6 (MOM6) in Python",
         "topics": [
-            "umi",
-            "atac-seq",
-            "deduplication"
+            "mom6",
+            "ocean-modelling",
+            "python",
+            "regional-model"
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-        "uid": "github/RichardMoot/LinearOne",
-        "url": "https://github.com/RichardMoot/LinearOne",
-        "rel": "/software/repository/github/RichardMoot/LinearOne",
-        "avatar": "https://avatars.githubusercontent.com/u/1473033?v=4",
-        "description": "LinearOne is a prototype theorem prover for first-order (multiplicative, intuitionistic) linear logic.",
+        "uid": "github/soilwater/crnpy",
+        "url": "https://github.com/soilwater/crnpy",
+        "rel": "/software/repository/github/soilwater/crnpy",
+        "avatar": "https://avatars.githubusercontent.com/u/73772799?v=4",
+        "description": "A Python toolbox for handling common tasks with cosmic-ray neutron probes",
         "topics": [
-            "linear-logic",
-            "first-order-logic",
-            "theorem-proving",
-            "proof-net",
-            "displacement-calculus-grammars",
-            "swi-prolog",
-            "logic-programming",
-            "latex"
+            "cosmic-rays",
+            "cosmos",
+            "neutron-detection",
+            "python",
+            "soil-moisture",
+            "crnp"
         ]
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-        "uid": "github/RichardMoot/GrailLight",
-        "url": "https://github.com/RichardMoot/GrailLight",
-        "rel": "/software/repository/github/RichardMoot/GrailLight",
-        "avatar": "https://avatars.githubusercontent.com/u/1473033?v=4",
-        "description": "Light-weight chart parser for multimodal type-logical grammars",
+        "uid": "github/GoekeLab/xpore",
+        "url": "https://github.com/GoekeLab/xpore",
+        "rel": "/software/repository/github/GoekeLab/xpore",
+        "avatar": "https://avatars.githubusercontent.com/u/46366103?v=4",
+        "description": "Identification of differential RNA modifications from nanopore direct RNA sequencing",
         "topics": [
-            "parser",
-            "parsing",
-            "logical-grammars",
-            "logic-programming",
-            "chart-parser",
-            "categorial-grammar",
-            "natural-language-processing",
-            "natural-language-understanding"
+            "rna",
+            "modification",
+            "transcriptomics",
+            "machine-learning",
+            "genomics",
+            "nanopore-sequencing",
+            "rna-seq",
+            "rna-modifications",
+            "nanopore",
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-        "uid": "github/astroboylrx/Rubble",
-        "url": "https://github.com/astroboylrx/Rubble",
-        "rel": "/software/repository/github/astroboylrx/Rubble",
-        "avatar": "https://avatars.githubusercontent.com/u/3999966?v=4",
-        "description": "Rubble: an implicit coagulation code for simulating solid size distribution evolution in protoplanetary disks",
+        "uid": "github/Chenmi0619/GALMoss",
+        "url": "https://github.com/Chenmi0619/GALMoss",
+        "rel": "/software/repository/github/Chenmi0619/GALMoss",
+        "avatar": "https://avatars.githubusercontent.com/u/112360046?v=4",
+        "description": "a galaxy surface bightness fitting code via gradient descent",
         "topics": []
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-        "uid": "github/astroboylrx/PLAN",
-        "url": "https://github.com/astroboylrx/PLAN",
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-        "description": "PLAN: PLanetesimal ANalyzer",
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-            "astrophysics",
-            "athena",
-            "particles",
-            "barnes-hut",
-            "3d",
-            "vtk",
-            "mpi",
-            "openmp",
-            "cmake"
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+        "uid": "github/tfwillems/HipSTR",
+        "url": "https://github.com/tfwillems/HipSTR",
+        "rel": "/software/repository/github/tfwillems/HipSTR",
+        "avatar": "https://avatars.githubusercontent.com/u/4562953?v=4",
+        "description": "Genotype and phase short tandem repeats using Illumina whole-genome sequencing data",
+        "topics": []
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-        "uid": "github/lucatelli/morphen",
-        "url": "https://github.com/lucatelli/morphen",
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-        "description": "Collection of functions for astronomical image analysis and processing. These tools involves pure python, but also are integrated with CASA (https://casa.nrao.edu/)",
+        "uid": "github/david-barnett/microViz",
+        "url": "https://github.com/david-barnett/microViz",
+        "rel": "/software/repository/github/david-barnett/microViz",
+        "avatar": "https://avatars.githubusercontent.com/u/33695702?v=4",
+        "description": "R package for microbiome data visualization. Uses phyloseq, vegan and tidyverse. See website link for docs with visual examples. Docker image available.",
+        "topics": [
+            "microbiome",
+            "microbiome-analysis",
+            "microbiota",
+            "rstats",
+            "r"
+        ]
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+        "uid": "github/calboo/Potential_Field_Calculator",
+        "url": "https://github.com/calboo/Potential_Field_Calculator",
+        "rel": "/software/repository/github/calboo/Potential_Field_Calculator",
+        "avatar": "https://avatars.githubusercontent.com/u/33519577?v=4",
+        "description": "A collection of codes for generating and visualising potential magnetic fields. If this numerical code is used, authors kindly request an acknowledgment via citation of paper https://www.aanda.org/articles/aa/full_html/2019/05/aa34684-18/aa34684-18.html",
         "topics": []
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-        "url": "https://github.com/Quantum-Dynamics-Hub/libra-code",
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-            "methodology-development",
-            "electronic-structure",
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-            "atomic-orbitals",
-            "object-oriented",
-            "utilities"
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+        "rel": "/software/repository/github/calboo/wigglewave",
+        "avatar": "https://avatars.githubusercontent.com/u/33519577?v=4",
+        "description": "Wigglewave is a FORTRAN code that uses an RK4 finite difference method to solve the linearised governing equations for Torsional Alfv\u00e9n Waves (TAWs) propagating in a plasma with negligible plasma beta and in a force-free axisymmetric magnetic field, with no azimuthal component, embedded in a high density divergent tube structure.",
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+        "rel": "/software/repository/github/calboo/TAWAS",
+        "avatar": "https://avatars.githubusercontent.com/u/33519577?v=4",
+        "description": "TAWAS is an IDL script for solving the wave equation for torsional Alfv\u00e8n waves in a viscous plasma. The background magnetic field is axisymmetric and force-free with no azimuthal component and the plasma beta is assumed to be negligable. The solution is calculated using the analytical formula presented in https://academic.oup.com/mnras/article-abstract/510/2/1910/6449388?redirectedFrom=fulltext. ",
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-        "avatar": "https://avatars.githubusercontent.com/u/35981550?v=4",
-        "description": "Tool for Rating Interesting Candidate Exoplanets and Reliability Analysis of Transits Originating from Proximate Stars",
+        "uid": "github/UUDigitalHumanitieslab/texcavator",
+        "url": "https://github.com/UUDigitalHumanitieslab/texcavator",
+        "rel": "/software/repository/github/UUDigitalHumanitieslab/texcavator",
+        "avatar": "https://avatars3.githubusercontent.com/u/7656260?v=4",
+        "description": "Text mining on the Royal Library newspaper corpus",
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-            "astrophysics",
-            "astrophysical-signals",
-            "exoplanets",
-            "exoplanet-transits",
-            "statistical-analysis"
+            "python",
+            "django",
+            "elasticsearch",
+            "dojo"
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-        "url": "https://github.com/GammaCascade/GCascade",
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-        "description": "Gamma-ray propagation package for Wolfram Mathematica",
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+        "description": "COINr",
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-        "url": "https://github.com/Valar-hub/MMLPhoto-z",
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-        "avatar": "https://avatars.githubusercontent.com/u/57578516?v=4",
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+        "uid": "github/Wytamma/snk",
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+        "rel": "/software/repository/github/Wytamma/snk",
+        "avatar": "https://avatars.githubusercontent.com/u/13726005?v=4",
+        "description": "Snakemake workflow management system and CLI generation tool",
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-        "url": "https://github.com/EbmeyerSt/GEnView",
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-        "avatar": "https://avatars.githubusercontent.com/u/11669686?v=4",
-        "description": "GEnView - A phylogeny based comparative genomics software to analyze the genetic environment of genes",
+        "uid": "github/bessagroup/f3dasm",
+        "url": "https://github.com/bessagroup/f3dasm",
+        "rel": "/software/repository/github/bessagroup/f3dasm",
+        "avatar": "https://avatars.githubusercontent.com/u/64279108?v=4",
+        "description": "Framework for Data-Driven Design & Analysis of Structures & Materials (F3DASM)",
+        "topics": [
+            "data-driven",
+            "machine-learning",
+            "computational-mechanics",
+            "design-of-experiments",
+            "framework",
+            "materials-science"
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+        "url": "https://github.com/hz1010/FIPRESCI_data_analysis",
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+        "description": "Code for FIPERSCI data",
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-        "description": "A deep-learning algorithm for the diagnosis of primary open-angle glaucoma from fundus photographs",
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+        "description": "Output FASTQ summary statistics in JSON format",
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+        "description": "A toolkit for using non-traditional meteorological observations",
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-        "description": "C++/CUDA GPU pulsar searching library",
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+        "description": "An analysis and visualization platform for 'omics data",
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+            "metatranscriptomics",
+            "pangenomics",
+            "comparative-genomics",
+            "science",
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+            "bioinformatics",
+            "phylogenomics",
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+        "description": "Staden Package \"io_lib\" (sometimes referred to as libstaden-read by distributions).    This contains code for reading and writing a variety of Bioinformatics / DNA Sequence formats.",
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-        "uid": "github/jenniferlu717/Bracken",
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-        "description": "(Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.",
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+        "description": "controllable lossy compression of BAM/CRAM files.",
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-        "avatar": "https://avatars.githubusercontent.com/u/54667906?v=4",
-        "description": "A Python module to create finder charts from image data of various sky surveys",
+        "uid": "github/jkbonfield/htscodecs",
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-        "description": "Java tool set for the identification and classification of astronomical objects with a focus on low-mass stars and ultra-cool dwarfs",
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+        "description": "Biomolecular Illustration Tool",
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-        "description": "A search and visualization tool for the unTimely Catalog",
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+        "description": "Parallel Parameter Field Generator for Python",
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-        "url": "https://github.com/baker-laboratory/RoseTTAFold-All-Atom",
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-        "description": "RoseTTAFold All-Atom is a biomolecular structure prediction neural network that can predict a broad range of biomolecular assemblies.",
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-        "uid": "github/ginolhac/mapDamage",
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-        "description": "mapDamage: tracking and quantifying damage patterns in ancient DNA sequences",
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+        "description": "The (Exoplanet Detection Identifier) EDI-Vetter is the rock'n roll love child of Terra and RoboVetter, optimized to vet K2 transit signals.",
         "topics": [
-            "ancient-dna-sequences",
-            "ngs",
-            "python",
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+        "description": "A compact version of EDI-Vetter, which uses the TLS output to quickly vet transit signals. All your favorite hits in a simplified format.",
+        "topics": [
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+            "python",
+            "tls",
+            "telescope",
+            "edi-vetter-unplugged",
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-        "description": "A C++ implementation of Cartesian impedance control for torque-controlled manipulators with ROS bindings.",
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-            "kuka-lbr-iiwa",
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-        "description": "Modular Julia-based agent framework to implement multi-agent systems",
+        "uid": "github/LuisScoccola/persistable",
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         "topics": [
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-            "agent-based",
-            "agent-based-simulation",
-            "agent-based-control"
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+            "clustering-algorithm",
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-        "uid": "github/sciapp/sampledb",
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-        "description": "Sample and Measurement Metadata Database",
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+        "description": "Python interface between FSPS and Cloudy.",
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-        "description": "Repository to analyze SN photometric and spectroscopic data",
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+        "description": "Python solution for communicating with peripheral ICs",
         "topics": []
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-        "description": "Library first implementation of the D3 dispersion correction",
+        "uid": "github/miRTop/mirtop",
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+        "description": "command lines tool to annotate miRNAs with a standard mirna/isomir naming",
         "topics": [
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-        "description": "A parallelised, Monte Carlo Markov Chain analysis tool for the epoch of reionisation (EoR)",
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+        "description": "Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments",
+        "topics": [
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+            "workflow",
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-        "description": "An End-to-End Evaluation Framework for Entity Resolution Systems",
+        "uid": "github/broadinstitute/gatk",
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+        "description": "Official code repository for GATK versions 4 and up",
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-            "author-name-disambiguation"
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+        "description": "a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.",
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-        "description": "Effective mobility Transformation for CE-MS data ",
+        "uid": "github/broadinstitute/picard",
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+        "description": "A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.",
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-        "description": "simDRIFT - A software package for massively parallel forward simulation of Pulsed Gradient Spin Echo diffusion weighted MRI experiments on biophysically accurate tissue systems. ",
+        "uid": "github/broadinstitute/Drop-seq",
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-        "description": "Zernike wavefront sensor analysis and simulation tools",
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+        "description": "A software package for analyzing snapshots of developmental processes",
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+        "description": "Crossbow: A Multi-GPU Deep Learning System for Training with Small Batch Sizes",
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-        "description": "Potential Field Source Surface model package for Python",
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+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Interface to the Bold Systems barcode webservice",
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-            "physics",
-            "solar-physics",
-            "sun"
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+            "barcodes",
+            "sequences",
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+            "r-package",
+            "taxize",
+            "barcode",
+            "biodiversity",
+            "DNA",
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-        "description": "automated measurements of global asteroseismic parameters",
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+        "rel": "/software/repository/github/ropensci/gutenbergr",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Search and download public domain texts from Project Gutenberg",
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-            "fundamental-analysis",
-            "stars",
-            "stellar-parameters",
-            "stellar-physics",
-            "stellar-astrophysics",
-            "python"
+            "r",
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-        "url": "https://github.com/ropensci/Rpolyhedra",
-        "rel": "/software/repository/github/ropensci/Rpolyhedra",
+        "uid": "github/ropensci/phylocomr",
+        "url": "https://github.com/ropensci/phylocomr",
+        "rel": "/software/repository/github/ropensci/phylocomr",
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-        "description": "A polyhedra database scraped from public available sources using R6 (OOP) and 'rgl' visualizing capabilities. ",
+        "description": "Phylocom R interface",
         "topics": [
-            "polyhedra-database",
-            "geometry",
-            "rgl",
+            "evolution",
+            "ecology",
+            "community-ecology",
+            "r",
+            "rstats",
+            "r-package",
+            "characterevolution",
+            "communitystructure",
+            "Phylocom",
+            "phylodiversity",
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+            "species",
             "data-extraction"
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-        "url": "https://github.com/ropensci/traits",
-        "rel": "/software/repository/github/ropensci/traits",
+        "uid": "github/ropensci/rzmq",
+        "url": "https://github.com/ropensci/rzmq",
+        "rel": "/software/repository/github/ropensci/rzmq",
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-        "description": "Species traits data",
+        "description": "R package for ZMQ",
         "topics": [
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-            "species",
-            "api-client",
+            "zmq",
+            "zeromq",
             "r",
             "rstats",
             "r-package",
-            "API",
-            "taxonomy",
-            "web-services",
-            "data-access"
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-        "uid": "github/ropensci/rtweet",
-        "url": "https://github.com/ropensci/rtweet",
-        "rel": "/software/repository/github/ropensci/rtweet",
+        "uid": "github/ropensci/rdataretriever",
+        "url": "https://github.com/ropensci/rdataretriever",
+        "rel": "/software/repository/github/ropensci/rdataretriever",
         "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
-        "description": "\ud83d\udc26 R client for interacting with Twitter's [stream and REST] APIs",
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-            "twitter",
-            "twitter-api",
-            "stream-api",
-            "rest-api",
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-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "An R client to the PatentsView API",
+        "description": "R interface to the Data Retriever",
         "topics": [
-            "patents",
-            "uspto",
-            "patentsview-api",
+            "science",
+            "data",
+            "data-science",
+            "database",
+            "datasets",
             "r",
             "rstats",
-            "patentsview",
-            "r-package",
-            "peer-reviewed",
-            "literature"
+            "r-package"
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-        "uid": "github/ropensci/pixelclasser",
-        "url": "https://github.com/ropensci/pixelclasser",
-        "rel": "/software/repository/github/ropensci/pixelclasser",
+        "uid": "github/ropensci/baRcodeR",
+        "url": "https://github.com/ropensci/baRcodeR",
+        "rel": "/software/repository/github/ropensci/baRcodeR",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Classifies Image Pixels by Colour",
+        "description": "Labeling, tracking, and organizing samples with 2D barcodes",
         "topics": [
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+            "scalereprod"
         ]
     },
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-        "uid": "github/ropensci/ckanr",
-        "url": "https://github.com/ropensci/ckanr",
-        "rel": "/software/repository/github/ropensci/ckanr",
+        "uid": "github/ropensci/skimr",
+        "url": "https://github.com/ropensci/skimr",
+        "rel": "/software/repository/github/ropensci/skimr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R client for the CKAN API",
+        "description": "A frictionless, pipeable approach to dealing with summary statistics",
         "topics": [
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-            "ckan",
-            "api-wrapper",
-            "open-data",
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             "r",
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             "r-package",
-            "api",
-            "data",
-            "database",
-            "dataset",
-            "databases"
+            "rstats",
+            "peer-reviewed",
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     {
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-        "url": "https://github.com/ropensci/tokenizers",
-        "rel": "/software/repository/github/ropensci/tokenizers",
+        "uid": "github/ropensci/googleLanguageR",
+        "url": "https://github.com/ropensci/googleLanguageR",
+        "rel": "/software/repository/github/ropensci/googleLanguageR",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Fast, Consistent Tokenization of Natural Language Text",
+        "description": "R client for the Google Translation API, Google Cloud Natural Language API and Google Cloud Speech API",
         "topics": [
-            "text-mining",
-            "tokenizer",
-            "rstats",
-            "nlp",
+            "cloud-speech-api",
+            "cloud-translation-api",
+            "translation-api",
+            "googleauthr",
+            "google-api-client",
             "r",
+            "rstats",
+            "google-cloud-speech",
+            "google-cloud",
+            "sentiment-analysis",
+            "google-nlp",
+            "natural-language-processing",
+            "speech-api",
             "r-package",
             "peer-reviewed",
-            "scalereprod"
+            "literature"
         ]
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-        "url": "https://github.com/ropensci/CoordinateCleaner",
-        "rel": "/software/repository/github/ropensci/CoordinateCleaner",
+        "uid": "github/ropensci/virtuoso",
+        "url": "https://github.com/ropensci/virtuoso",
+        "rel": "/software/repository/github/ropensci/virtuoso",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Automated flagging of common spatial and temporal errors in biological and palaeontological collection data, for the use in conservation, ecology and palaeontology.",
+        "description": ":package: Interact with Virtuoso Open Source database instances from R",
         "topics": [
-            "r",
-            "r-package",
-            "rstats",
-            "data-extraction"
+            "databases"
         ]
     },
     {
-        "uid": "github/ropensci/rgpdd",
-        "url": "https://github.com/ropensci/rgpdd",
-        "rel": "/software/repository/github/ropensci/rgpdd",
+        "uid": "github/ropensci/rsnps",
+        "url": "https://github.com/ropensci/rsnps",
+        "rel": "/software/repository/github/ropensci/rsnps",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Interface to the Global Population Dynamics Database, http://www3.imperial.ac.uk/cpb/databases/gpdd",
+        "description": "Wrapper to a number of SNP web APIs",
         "topics": [
-            "r",
+            "web-api",
+            "snps",
+            "data",
             "rstats",
+            "r",
             "r-package",
+            "API",
+            "api-client",
+            "dbSNP",
+            "gene",
+            "genotype",
+            "NCBI",
+            "OpenSNP",
+            "sequence",
+            "snp",
+            "species",
+            "web",
             "data-access"
         ]
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-        "uid": "github/ropensci/biomartr",
-        "url": "https://github.com/ropensci/biomartr",
-        "rel": "/software/repository/github/ropensci/biomartr",
+        "uid": "github/ropensci/visdat",
+        "url": "https://github.com/ropensci/visdat",
+        "rel": "/software/repository/github/ropensci/visdat",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Genomic Data Retrieval with R",
+        "description": "Preliminary Exploratory Visualisation of Data",
         "topics": [
-            "r",
-            "genome-retrieval",
-            "biomart",
-            "database-retrieval",
-            "ncbi-genbank",
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-            "ensembl-servers",
-            "sequenced-genomes",
-            "proteome",
-            "genome",
-            "genome-annotation",
-            "metagenomics",
-            "meta-analysis",
-            "rstats",
+            "missingness",
+            "visualisation",
+            "r",
+            "exploratory-data-analysis",
+            "ropensci",
             "r-package",
+            "rstats",
             "peer-reviewed",
-            "annotation-retrieval",
-            "biological-data-retrieval",
-            "BioMart",
-            "ENSEMBL",
-            "genomic-data-retrieval",
-            "NCBI",
-            "data-access"
+            "data-visualization"
         ]
     },
     {
-        "uid": "github/ropensci/prism",
-        "url": "https://github.com/ropensci/prism",
-        "rel": "/software/repository/github/ropensci/prism",
+        "uid": "github/ropensci/git2rdata",
+        "url": "https://github.com/ropensci/git2rdata",
+        "rel": "/software/repository/github/ropensci/git2rdata",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Download data from the Oregon PRISM climate data project http://www.prism.oregonstate.edu/",
+        "description": "An R package for storing and retrieving data.frames in git repositories.",
         "topics": [
             "r",
             "rstats",
             "r-package",
-            "data-access"
+            "version-control",
+            "reproducible-research",
+            "data-extraction"
         ]
     },
     {
-        "uid": "github/ropensci/eia",
-        "url": "https://github.com/ropensci/eia",
-        "rel": "/software/repository/github/ropensci/eia",
+        "uid": "github/ropensci/readODS",
+        "url": "https://github.com/ropensci/readODS",
+        "rel": "/software/repository/github/ropensci/readODS",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "An R package wrapping the US Energy Information Administration open data API.",
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-            "r-package",
-            "energy-data",
-            "energy-information-administration",
-            "open-data",
-            "eia",
-            "cran",
-            "data-access"
-        ]
+        "description": "read ODS files into R as data.frames",
+        "topics": []
     },
     {
-        "uid": "github/ropensci/AntWeb",
-        "url": "https://github.com/ropensci/AntWeb",
-        "rel": "/software/repository/github/ropensci/AntWeb",
+        "uid": "github/ropensci/europepmc",
+        "url": "https://github.com/ropensci/europepmc",
+        "rel": "/software/repository/github/ropensci/europepmc",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "An R wrapper for the AntWeb API",
+        "description": "R Interface to Europe PMC RESTful Web Service",
         "topics": [
-            "antweb",
-            "antweb-api",
-            "specimen-records",
+            "europe-pmc",
             "r",
             "rstats",
-            "spocc",
+            "bibliometrics",
+            "scientific-literature",
+            "scientific-publications",
             "r-package",
-            "data-access"
+            "pubmed",
+            "pubmedcentral",
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/git2rdata",
-        "url": "https://github.com/ropensci/git2rdata",
-        "rel": "/software/repository/github/ropensci/git2rdata",
+        "uid": "github/ropensci/skynet",
+        "url": "https://github.com/ropensci/skynet",
+        "rel": "/software/repository/github/ropensci/skynet",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "An R package for storing and retrieving data.frames in git repositories.",
+        "description": "Generates networks from BTS DB1B/T-100 data",
         "topics": [
+            "db1b",
+            "transtats",
+            "bureau-of-transport-statistics",
+            "bts",
+            "rita",
+            "t100",
+            "air-transport",
+            "skynet",
+            "peer-reviewed",
             "r",
-            "rstats",
             "r-package",
-            "version-control",
-            "reproducible-research",
-            "data-extraction"
+            "rstats",
+            "data-access"
         ]
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     {
-        "uid": "github/ropensci/stats19",
-        "url": "https://github.com/ropensci/stats19",
-        "rel": "/software/repository/github/ropensci/stats19",
+        "uid": "github/ropensci/xslt",
+        "url": "https://github.com/ropensci/xslt",
+        "rel": "/software/repository/github/ropensci/xslt",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R package for working with open road traffic casualty data from Great Britain",
+        "description": "Extension of xml2 package for xsl transformations",
         "topics": [
+            "xslt",
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             "r",
-            "r-package",
             "rstats",
-            "car-crashes",
-            "data",
-            "road-safety",
-            "ropensci",
-            "stats19",
-            "transport",
-            "data-access"
+            "r-package",
+            "data-extraction"
         ]
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-        "uid": "github/ropensci/datapack",
-        "url": "https://github.com/ropensci/datapack",
-        "rel": "/software/repository/github/ropensci/datapack",
+        "uid": "github/ropensci/seasl",
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+        "rel": "/software/repository/github/ropensci/seasl",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "An R package to handle data packages",
+        "description": "Load CSL styles and locales in R, and inspect contents",
         "topics": [
             "r",
-            "rstats",
             "r-package",
-            "scalereprod"
+            "rstats",
+            "citeproc",
+            "citations",
+            "literature",
+            "parse",
+            "style",
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+            "literature"
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     {
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-        "url": "https://github.com/ropensci/rotl",
-        "rel": "/software/repository/github/ropensci/rotl",
+        "uid": "github/ropensci/rgnparser",
+        "url": "https://github.com/ropensci/rgnparser",
+        "rel": "/software/repository/github/ropensci/rgnparser",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Interface to Open Tree of Life API",
+        "description": "Parse scientific names using gnparser (https://github.com/gnames/gnparser)",
         "topics": [
             "r",
             "rstats",
-            "r-package",
             "taxonomy",
-            "phylogeny",
-            "peer-reviewed",
-            "biodiversity",
-            "independant-contrasts",
-            "metadata",
-            "phylogenetics",
-            "ropensci",
-            "data-access"
+            "r-package"
         ]
     },
     {
-        "uid": "github/ropensci/pathviewr",
-        "url": "https://github.com/ropensci/pathviewr",
-        "rel": "/software/repository/github/ropensci/pathviewr",
+        "uid": "github/ropensci/ghql",
+        "url": "https://github.com/ropensci/ghql",
+        "rel": "/software/repository/github/ropensci/ghql",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "\ud83d\udc26 Tools to import, clean, and visualize animal movement data in R",
+        "description": "GraphQL R client",
         "topics": [
-            "movement-data",
-            "motion",
-            "animal-movement",
-            "optitrack",
-            "flydra",
-            "visual-guidance",
-            "visual-perception",
+            "graphql",
+            "graphql-client",
             "rstats",
-            "rstats-package",
-            "trajectory-analysis",
-            "trajectories",
-            "data-extraction"
+            "r",
+            "graphql-api",
+            "r-package",
+            "API",
+            "curl",
+            "data",
+            "GraphQL",
+            "http",
+            "web-services",
+            "http-tools"
         ]
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     {
-        "uid": "github/ropensci/photosearcher",
-        "url": "https://github.com/ropensci/photosearcher",
-        "rel": "/software/repository/github/ropensci/photosearcher",
+        "uid": "github/ropensci/epubr",
+        "url": "https://github.com/ropensci/epubr",
+        "rel": "/software/repository/github/ropensci/epubr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Searches Flickr for photographs and metadata ",
+        "description": "Read EPUB files in R",
         "topics": [
+            "epub-files",
+            "r",
+            "rstats",
+            "r-package",
+            "epub",
+            "epub-format",
+            "peer-reviewed",
             "data-access"
         ]
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     {
-        "uid": "github/ropensci/lingtypology",
-        "url": "https://github.com/ropensci/lingtypology",
-        "rel": "/software/repository/github/ropensci/lingtypology",
+        "uid": "github/ropensci/DoOR.data",
+        "url": "https://github.com/ropensci/DoOR.data",
+        "rel": "/software/repository/github/ropensci/DoOR.data",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R package for linguistic cartography and typological databases search",
+        "description": "R package containing the data for the Database of Odor Responses",
         "topics": [
-            "clld",
-            "linguistics",
-            "typology",
-            "linguistic-maps",
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-            "phoible",
-            "glottolog-database",
-            "afbo",
-            "sails",
-            "abvd",
-            "atlas",
             "r",
+            "rstats",
             "r-package",
-            "bivaltyp",
-            "literature"
+            "peer-reviewed",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/rnaturalearthdata",
-        "url": "https://github.com/ropensci/rnaturalearthdata",
-        "rel": "/software/repository/github/ropensci/rnaturalearthdata",
+        "uid": "github/ropensci/antanym",
+        "url": "https://github.com/ropensci/antanym",
+        "rel": "/software/repository/github/ropensci/antanym",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "to hold data used by rnaturalearth",
+        "description": "R package for Antarctic geographic placenames",
         "topics": [
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             "r",
             "r-package",
             "rstats",
-            "geospatial"
+            "Antarctic",
+            "gazetteer",
+            "placenames",
+            "SouthernOcean",
+            "data-access"
         ]
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-        "url": "https://github.com/ropensci/rOPTRAM",
-        "rel": "/software/repository/github/ropensci/rOPTRAM",
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-        "description": "Derive Soil Moisture Using the OPTRAM Algorithm",
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-        "uid": "github/ropensci/staypuft",
-        "url": "https://github.com/ropensci/staypuft",
-        "rel": "/software/repository/github/ropensci/staypuft",
+        "uid": "github/ropensci/piggyback",
+        "url": "https://github.com/ropensci/piggyback",
+        "rel": "/software/repository/github/ropensci/piggyback",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "convert objects to and from R data structures",
+        "description": ":package: for using large(r) data files on GitHub",
         "topics": [
-            "marshmallow",
-            "data-structures",
-            "serialization",
-            "deserialization",
-            "validation",
+            "git-lfs",
+            "data-store",
             "r",
-            "rstats",
-            "r-port",
+            "peer-reviewed",
             "r-package",
-            "data",
-            "schema",
-            "serlialization",
-            "types",
-            "scalereprod"
+            "rstats",
+            "data-publication"
         ]
     },
     {
-        "uid": "github/ropensci/helminthR",
-        "url": "https://github.com/ropensci/helminthR",
-        "rel": "/software/repository/github/ropensci/helminthR",
+        "uid": "github/ropensci/brranching",
+        "url": "https://github.com/ropensci/brranching",
+        "rel": "/software/repository/github/ropensci/brranching",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Accesses parasite occurrence records from the London Natural History Museum's Host-Parasite database, which contains over a quarter of a million helminth records.",
+        "description": "I can haz all the phylogenies",
         "topics": [
-            "helminth",
-            "parasites",
-            "open-data",
-            "disease-networks",
-            "r",
             "rstats",
+            "phylogeny",
+            "phylogenies",
+            "r",
             "r-package",
+            "molecular",
+            "phylomatic",
+            "plants",
+            "tree",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/opentripplanner",
-        "url": "https://github.com/ropensci/opentripplanner",
-        "rel": "/software/repository/github/ropensci/opentripplanner",
-        "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
-        "description": "An API wrapper for OpenTripPlanner (OTP) as an R package",
+        "uid": "github/ropensci/stplanr",
+        "url": "https://github.com/ropensci/stplanr",
+        "rel": "/software/repository/github/ropensci/stplanr",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Sustainable transport planning with R",
         "topics": [
             "r",
             "transport",
-            "data",
+            "spatial",
+            "rstats",
+            "r-package",
+            "peer-reviewed",
+            "transport-planning",
+            "walking",
+            "cycling",
+            "pubic-transport",
+            "origin-destination",
+            "desire-lines",
+            "routes",
             "routing",
-            "opentripplanner",
-            "public-transport",
-            "transportation-planning",
-            "otp",
-            "java",
-            "isochrones"
+            "route-network",
+            "transportation",
+            "cycle",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/drake",
-        "url": "https://github.com/ropensci/drake",
-        "rel": "/software/repository/github/ropensci/drake",
-        "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
-        "description": "An R-focused pipeline toolkit for reproducibility and high-performance computing",
+        "uid": "github/ropensci/getCRUCLdata",
+        "url": "https://github.com/ropensci/getCRUCLdata",
+        "rel": "/software/repository/github/ropensci/getCRUCLdata",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "CRU CL v. 2.0 Climatology Client for R",
         "topics": [
-            "reproducibility",
-            "high-performance-computing",
+            "cru",
+            "climate-data",
+            "cru-cl2",
+            "temperature",
+            "rainfall",
+            "elevation",
             "r",
-            "data-science",
-            "drake",
-            "makefile",
-            "pipeline",
-            "workflow",
-            "reproducible-research",
+            "data-access",
+            "wind",
+            "relative-humidity",
+            "solar-radiation",
+            "diurnal-temperature",
+            "frost",
             "rstats",
             "r-package",
-            "ropensci",
-            "peer-reviewed"
+            "peer-reviewed",
+            "anglia-cru"
         ]
     },
     {
-        "uid": "github/ropensci/rdhs",
-        "url": "https://github.com/ropensci/rdhs",
-        "rel": "/software/repository/github/ropensci/rdhs",
+        "uid": "github/ropensci/rnpn",
+        "url": "https://github.com/ropensci/rnpn",
+        "rel": "/software/repository/github/ropensci/rnpn",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "API Client and Data Munging for the Demographic and Health Survey Data",
+        "description": "R client for the National Phenology Network database API",
         "topics": [
-            "dataset",
-            "survey-data",
-            "dhs",
-            "extract",
-            "dhs-api",
-            "peer-reviewed",
+            "web-api",
+            "species",
+            "data",
+            "rstats",
             "r",
+            "national-phenology-network",
+            "phenology",
             "r-package",
-            "rstats",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/pendulum",
-        "url": "https://github.com/ropensci/pendulum",
-        "rel": "/software/repository/github/ropensci/pendulum",
+        "uid": "github/ropensci/weatherOz",
+        "url": "https://github.com/ropensci/weatherOz",
+        "rel": "/software/repository/github/ropensci/weatherOz",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "a date/time replacement pkg for R to facilitate time hacking",
+        "description": "An API Client for Australian Weather and Climate Data Resources",
         "topics": [
-            "r",
+            "australia",
             "rstats",
-            "time-mock",
-            "mock-time",
-            "scalereprod"
+            "weather",
+            "climate",
+            "api-client",
+            "data",
+            "weather-api",
+            "weather-forecast",
+            "rainfall",
+            "r"
         ]
     },
     {
-        "uid": "github/ropensci/SymbiotaR2",
-        "url": "https://github.com/ropensci/SymbiotaR2",
-        "rel": "/software/repository/github/ropensci/SymbiotaR2",
-        "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
-        "description": "SymbiotaR2: an R package for accessing and downloading from Symbiota2 portals",
+        "uid": "github/ropensci/awardFindR",
+        "url": "https://github.com/ropensci/awardFindR",
+        "rel": "/software/repository/github/ropensci/awardFindR",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Scan multiple online grant databases for relevant awards",
         "topics": [
-            "symbiota2-portal",
-            "database",
-            "library",
-            "r",
-            "symbiota",
-            "specimen-records",
-            "symbiota2"
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/mcbette",
-        "url": "https://github.com/ropensci/mcbette",
-        "rel": "/software/repository/github/ropensci/mcbette",
+        "uid": "github/ropensci/getlandsat",
+        "url": "https://github.com/ropensci/getlandsat",
+        "rel": "/software/repository/github/ropensci/getlandsat",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Model Comparison using babette",
+        "description": "get landsat 8 images and metadata",
         "topics": [
-            "scalereprod"
+            "landsat",
+            "data",
+            "rstats",
+            "r",
+            "r-package",
+            "peer-reviewed",
+            "aws",
+            "earth",
+            "image",
+            "imaging",
+            "nasa",
+            "usgs",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/daiquiri",
-        "url": "https://github.com/ropensci/daiquiri",
-        "rel": "/software/repository/github/ropensci/daiquiri",
+        "uid": "github/ropensci/CoordinateCleaner",
+        "url": "https://github.com/ropensci/CoordinateCleaner",
+        "rel": "/software/repository/github/ropensci/CoordinateCleaner",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Data quality reporting for temporal datasets.",
+        "description": "Automated flagging of common spatial and temporal errors in biological and palaeontological collection data, for the use in conservation, ecology and palaeontology.",
         "topics": [
-            "data-quality",
-            "initial-data-analysis",
             "r",
             "r-package",
-            "reproducible-research",
             "rstats",
-            "temporal-data",
-            "time-series"
+            "data-extraction"
         ]
     },
     {
-        "uid": "github/ropensci/EML",
-        "url": "https://github.com/ropensci/EML",
-        "rel": "/software/repository/github/ropensci/EML",
+        "uid": "github/ropensci/jsonld",
+        "url": "https://github.com/ropensci/jsonld",
+        "rel": "/software/repository/github/ropensci/jsonld",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": " Ecological Metadata Language interface for R: synthesis and integration of heterogenous data",
+        "description": "R wrapper for jsonld.js JavaScript library",
         "topics": [
-            "metadata-standard",
-            "eml",
-            "eml-metadata",
+            "json-ld",
             "r",
             "rstats",
             "r-package",
-            "data-publication"
+            "data-extraction"
         ]
     },
     {
-        "uid": "github/ropensci/conditionz",
-        "url": "https://github.com/ropensci/conditionz",
-        "rel": "/software/repository/github/ropensci/conditionz",
+        "uid": "github/ropensci/gittargets",
+        "url": "https://github.com/ropensci/gittargets",
+        "rel": "/software/repository/github/ropensci/gittargets",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "control how many times conditions are thrown",
+        "description": "Data version control for reproducible analysis pipelines in R with {targets}.",
         "topics": [
+            "data-version-control",
+            "data-versioning",
+            "workflow",
+            "data-science",
             "r",
+            "reproducible-research",
             "rstats",
-            "conditions",
             "r-package",
-            "condition",
-            "condition-control",
-            "message",
-            "warning",
-            "scalereprod"
+            "reproducibility",
+            "targets"
         ]
     },
     {
-        "uid": "github/ropensci/finch",
-        "url": "https://github.com/ropensci/finch",
-        "rel": "/software/repository/github/ropensci/finch",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Read Darwin Core Archive files",
+        "uid": "github/ropensci/chirps",
+        "url": "https://github.com/ropensci/chirps",
+        "rel": "/software/repository/github/ropensci/chirps",
+        "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
+        "description": "API Client for CHIRPS",
         "topics": [
+            "climatology",
+            "precipitation-data",
             "rstats",
-            "darwin-core",
-            "darwincore",
-            "biodiversity",
-            "gbif",
-            "r",
-            "r-package",
-            "biology",
-            "collections",
-            "occurrences",
-            "species",
-            "specimen",
-            "data-extraction"
+            "chirps"
         ]
     },
     {
-        "uid": "github/ropensci/antanym",
-        "url": "https://github.com/ropensci/antanym",
-        "rel": "/software/repository/github/ropensci/antanym",
+        "uid": "github/ropensci/colocr",
+        "url": "https://github.com/ropensci/colocr",
+        "rel": "/software/repository/github/ropensci/colocr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R package for Antarctic geographic placenames",
+        "description": "An R package for conducting co-localization analysis. Edit",
         "topics": [
-            "peer-reviewed",
+            "image-analysis",
+            "colocalization",
             "r",
             "r-package",
             "rstats",
-            "Antarctic",
-            "gazetteer",
-            "placenames",
-            "SouthernOcean",
-            "data-access"
+            "data-extraction"
         ]
     },
     {
-        "uid": "github/ropensci/tic",
-        "url": "https://github.com/ropensci/tic",
-        "rel": "/software/repository/github/ropensci/tic",
+        "uid": "github/ropensci/rdatacite",
+        "url": "https://github.com/ropensci/rdatacite",
+        "rel": "/software/repository/github/ropensci/rdatacite",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Tasks Integrating Continuously: CI-Agnostic Workflow Definitions",
+        "description": "Wrapper to DataCite metadata",
         "topics": [
+            "datacite",
+            "oai-pmh",
+            "metadata",
+            "api-wrapper",
+            "rstats",
             "r",
-            "travis-ci",
-            "appveyor",
-            "continuous-integration",
-            "deployment",
+            "solr",
+            "identifier",
             "r-package",
-            "rstats",
-            "githubactions",
-            "scalereprod"
+            "API",
+            "data",
+            "dataset",
+            "https",
+            "scholarly",
+            "web-services",
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/fulltext",
-        "url": "https://github.com/ropensci/fulltext",
-        "rel": "/software/repository/github/ropensci/fulltext",
+        "uid": "github/ropensci/rorcid",
+        "url": "https://github.com/ropensci/rorcid",
+        "rel": "/software/repository/github/ropensci/rorcid",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Search across and get full text for OA & closed journals",
+        "description": "A programmatic interface the Orcid.org API",
         "topics": [
-            "text-ming",
-            "pdf",
-            "metadata",
-            "open-access",
-            "xml",
-            "extract-text",
-            "crossref",
+            "api-wrapper",
+            "orcid",
+            "doi",
+            "scholarly-metadata",
+            "identifiers",
             "rstats",
             "r",
+            "orcid-api",
             "r-package",
             "citations",
-            "full-text",
             "literature",
+            "people",
             "publications",
-            "TDM",
-            "text-mining",
+            "scholarly",
             "literature"
         ]
     },
     {
-        "uid": "github/ropensci/DataSpaceR",
-        "url": "https://github.com/ropensci/DataSpaceR",
-        "rel": "/software/repository/github/ropensci/DataSpaceR",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R Interface to the CAVD DataSpace",
-        "topics": [
-            "cavd-dataspace",
-            "data-access"
-        ]
-    },
-    {
-        "uid": "github/ropensci/ruODK",
-        "url": "https://github.com/ropensci/ruODK",
-        "rel": "/software/repository/github/ropensci/ruODK",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "ruODK: An R Client for the ODK Central API",
-        "topics": [
-            "opendatakit",
-            "odata",
-            "odata-client",
-            "odk",
-            "odk-central",
-            "rstats",
-            "r-package",
-            "api",
-            "data",
-            "database",
-            "dataset",
-            "open-data",
-            "scalereprod"
-        ]
-    },
-    {
-        "uid": "github/ropensci/plater",
-        "url": "https://github.com/ropensci/plater",
-        "rel": "/software/repository/github/ropensci/plater",
+        "uid": "github/ropensci/unrtf",
+        "url": "https://github.com/ropensci/unrtf",
+        "rel": "/software/repository/github/ropensci/unrtf",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Tools to make it easy to work with microtiter plate-shaped data",
+        "description": "Wrapper for 'unrtf' utility to extract text from RTF documents",
         "topics": [
+            "rtf",
+            "extract-text",
+            "unrtf",
             "r",
             "rstats",
             "r-package",
-            "scalereprod"
-        ]
-    },
-    {
-        "uid": "github/ropensci/lightr",
-        "url": "https://github.com/ropensci/lightr",
-        "rel": "/software/repository/github/ropensci/lightr",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Import spectral data and related metadata in R",
-        "topics": [
-            "r",
-            "spectroscopy",
-            "spectral-data",
-            "reproducible-research",
-            "reproducible-science",
-            "reproducibility",
-            "r-package",
-            "file-import",
-            "data-extraction"
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/hydroscoper",
-        "url": "https://github.com/ropensci/hydroscoper",
-        "rel": "/software/repository/github/ropensci/hydroscoper",
+        "uid": "github/ropensci/natserv",
+        "url": "https://github.com/ropensci/natserv",
+        "rel": "/software/repository/github/ropensci/natserv",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R interface to the Greek National Data Bank for Hydrometeorological Information",
+        "description": "NatureServe R client",
         "topics": [
-            "climate",
-            "hydroscope",
-            "hydrometeorology",
-            "hydrology",
-            "tidy-data",
-            "time-series",
-            "greece",
-            "water-resources",
-            "meteorological-stations",
-            "meteorological-data",
             "r",
             "rstats",
             "r-package",
-            "peer-reviewed",
+            "taxonomy",
+            "taxize",
+            "API",
+            "maps",
+            "metadata",
+            "NatureServe",
+            "species",
+            "web-services",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/rcitoid",
-        "url": "https://github.com/ropensci/rcitoid",
-        "rel": "/software/repository/github/ropensci/rcitoid",
+        "uid": "github/ropensci/conditionz",
+        "url": "https://github.com/ropensci/conditionz",
+        "rel": "/software/repository/github/ropensci/conditionz",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Citation data via Wikimedia using the Citoid service ",
+        "description": "control how many times conditions are thrown",
         "topics": [
             "r",
             "rstats",
-            "api-client",
-            "wikimedia",
-            "citoid",
-            "doi",
-            "pmid",
-            "pmcid",
-            "isbn",
+            "conditions",
             "r-package",
-            "citations",
-            "Citoid",
-            "literature",
-            "publications",
-            "text-ming",
-            "Wikicite",
-            "Wikipedia",
-            "literature"
+            "condition",
+            "condition-control",
+            "message",
+            "warning",
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/rcoreoa",
-        "url": "https://github.com/ropensci/rcoreoa",
-        "rel": "/software/repository/github/ropensci/rcoreoa",
+        "uid": "github/ropensci/ckanr",
+        "url": "https://github.com/ropensci/ckanr",
+        "rel": "/software/repository/github/ropensci/ckanr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "CORE API R Client",
+        "description": "R client for the CKAN API",
         "topics": [
+            "ckan-api",
+            "ckan",
             "api-wrapper",
-            "scholarly-metadata",
-            "r",
-            "rstats",
-            "r-package",
-            "citations",
-            "full-text",
-            "literature",
-            "metadata",
-            "pdf",
-            "publications",
-            "text-ming",
-            "data-access"
-        ]
-    },
-    {
-        "uid": "github/ropensci/phylocomr",
-        "url": "https://github.com/ropensci/phylocomr",
-        "rel": "/software/repository/github/ropensci/phylocomr",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Phylocom R interface",
-        "topics": [
-            "evolution",
-            "ecology",
-            "community-ecology",
+            "open-data",
             "r",
             "rstats",
             "r-package",
-            "characterevolution",
-            "communitystructure",
-            "Phylocom",
-            "phylodiversity",
-            "phylogeny",
-            "species",
-            "data-extraction"
+            "api",
+            "data",
+            "database",
+            "dataset",
+            "databases"
         ]
     },
     {
-        "uid": "github/ropensci/dbparser",
-        "url": "https://github.com/ropensci/dbparser",
-        "rel": "/software/repository/github/ropensci/dbparser",
+        "uid": "github/ropensci/katex",
+        "url": "https://github.com/ropensci/katex",
+        "rel": "/software/repository/github/ropensci/katex",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Source code for the R package, \"dbparser\" (i.e. DrugBank Parser)",
+        "description": "Server side math to html rendering in R",
         "topics": [
-            "data-access"
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/mctq",
-        "url": "https://github.com/ropensci/mctq",
-        "rel": "/software/repository/github/ropensci/mctq",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "\u2600 Tools to process the Munich ChronoType Questionnaire (MCTQ)",
+        "uid": "github/ropensci/UCSCXenaTools",
+        "url": "https://github.com/ropensci/UCSCXenaTools",
+        "rel": "/software/repository/github/ropensci/UCSCXenaTools",
+        "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
+        "description": ":package: An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/",
         "topics": [
-            "chronobiology",
-            "mctq",
-            "sleep",
-            "r-package",
-            "peer-reviewed",
+            "ucsc-xena",
+            "downloader",
+            "api-client",
+            "tcga",
+            "ccle",
+            "icgc",
+            "ucsc",
+            "toil",
+            "treehouse",
             "r",
-            "rstats",
-            "data-extraction"
+            "bioinformatics"
         ]
     },
     {
-        "uid": "github/ropensci/beastier",
-        "url": "https://github.com/ropensci/beastier",
-        "rel": "/software/repository/github/ropensci/beastier",
+        "uid": "github/ropensci/tacmagic",
+        "url": "https://github.com/ropensci/tacmagic",
+        "rel": "/software/repository/github/ropensci/tacmagic",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R package to run BEAST2",
+        "description": "tacmagic: PET Analysis in R",
         "topics": [
+            "positron-emission-tomography",
+            "pet",
+            "pet-mr",
+            "neuroimaging",
             "r",
-            "r-package",
-            "rstats",
-            "scalereprod"
+            "statistics",
+            "positron",
+            "mri",
+            "neuroscience",
+            "neuroscience-methods",
+            "data-extraction"
         ]
     },
     {
@@ -17643,474 +17633,451 @@
         ]
     },
     {
-        "uid": "github/ropensci/wellknown",
-        "url": "https://github.com/ropensci/wellknown",
-        "rel": "/software/repository/github/ropensci/wellknown",
+        "uid": "github/ropensci/crul",
+        "url": "https://github.com/ropensci/crul",
+        "rel": "/software/repository/github/ropensci/crul",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "WKT <-> GeoJSON",
+        "description": "R6 based http client for R (made for developers)",
         "topics": [
-            "geojson",
-            "wkt",
-            "wkb",
+            "http",
+            "curl",
+            "async",
             "rstats",
-            "wellknown",
-            "geospatial",
-            "spatial",
+            "api",
             "r",
             "r-package",
-            "binary",
-            "conversion",
-            "well-known-text"
+            "API",
+            "caching",
+            "download",
+            "https",
+            "libcurl",
+            "mocking",
+            "web-services",
+            "http-tools"
         ]
     },
     {
-        "uid": "github/ropensci/charlatan",
-        "url": "https://github.com/ropensci/charlatan",
-        "rel": "/software/repository/github/ropensci/charlatan",
+        "uid": "github/ropensci/roadoi",
+        "url": "https://github.com/ropensci/roadoi",
+        "rel": "/software/repository/github/ropensci/roadoi",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Create fake data in R",
+        "description": "Use Unpaywall with R",
         "topics": [
-            "data",
-            "faker",
-            "rstats",
-            "dataset",
-            "fake-data",
+            "open-access",
+            "oadoi",
             "r",
+            "webclient",
+            "code4lib",
+            "altmetrics",
+            "rstats",
             "r-package",
             "peer-reviewed",
-            "scalereprod"
+            "unpaywall",
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/tesseract",
-        "url": "https://github.com/ropensci/tesseract",
-        "rel": "/software/repository/github/ropensci/tesseract",
+        "uid": "github/ropensci/dbhydroR",
+        "url": "https://github.com/ropensci/dbhydroR",
+        "rel": "/software/repository/github/ropensci/dbhydroR",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Bindings to Tesseract OCR engine for R",
+        "description": "R interface to the South Florida Water Management District's DBHYDRO Database :sweat_drops::palm_tree:",
         "topics": [
-            "tesseract",
-            "ocr",
+            "water-quality",
+            "water-resources",
+            "ecology",
+            "geoscience",
+            "groundwater",
+            "government-data",
             "r",
             "rstats",
             "r-package",
-            "tesseract-ocr",
-            "image-processing"
+            "peer-reviewed",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/ghql",
-        "url": "https://github.com/ropensci/ghql",
-        "rel": "/software/repository/github/ropensci/ghql",
+        "uid": "github/ropensci/geojsonio",
+        "url": "https://github.com/ropensci/geojsonio",
+        "rel": "/software/repository/github/ropensci/geojsonio",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "GraphQL R client",
+        "description": "Convert many data formats to & from GeoJSON & TopoJSON",
         "topics": [
-            "graphql",
-            "graphql-client",
+            "geojson",
+            "topojson",
+            "io",
             "rstats",
             "r",
-            "graphql-api",
             "r-package",
-            "API",
-            "curl",
+            "conversion",
             "data",
-            "GraphQL",
-            "http",
-            "web-services",
-            "http-tools"
+            "geospatial",
+            "input-output",
+            "geospatial"
         ]
     },
     {
-        "uid": "github/ropensci/rplos",
-        "url": "https://github.com/ropensci/rplos",
-        "rel": "/software/repository/github/ropensci/rplos",
+        "uid": "github/ropensci/spocc",
+        "url": "https://github.com/ropensci/spocc",
+        "rel": "/software/repository/github/ropensci/spocc",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R client for the PLoS Journals API",
+        "description": "Species occurrence data toolkit for R",
         "topics": [
-            "text-mining",
-            "xml",
-            "pdf",
-            "metadata",
-            "web-api",
-            "plos",
-            "r",
+            "gbif",
+            "vertnet",
+            "ecoengine",
+            "antweb",
+            "ebird",
+            "data",
+            "api",
             "rstats",
+            "r",
+            "species",
+            "inaturalist",
+            "idigbio",
+            "obis",
+            "bison",
+            "species-occurrence",
+            "occurrence",
+            "spocc",
             "r-package",
+            "ALA",
             "API",
-            "api-client",
-            "article",
-            "fulltext",
-            "JSON",
-            "library",
-            "PLOS",
-            "science",
-            "web",
-            "XML",
-            "literature"
+            "BISON",
+            "eBird",
+            "GBIF",
+            "iDigBio",
+            "INAT",
+            "OBIS",
+            "occurrences",
+            "specimens",
+            "taxonomy",
+            "Vertnet",
+            "web-services",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/arkdb",
-        "url": "https://github.com/ropensci/arkdb",
-        "rel": "/software/repository/github/ropensci/arkdb",
+        "uid": "github/ropensci/staypuft",
+        "url": "https://github.com/ropensci/staypuft",
+        "rel": "/software/repository/github/ropensci/staypuft",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Archive and unarchive databases as flat text files",
+        "description": "convert objects to and from R data structures",
         "topics": [
-            "database",
-            "archiving",
+            "marshmallow",
+            "data-structures",
+            "serialization",
+            "deserialization",
+            "validation",
             "r",
             "rstats",
-            "dbi",
-            "peer-reviewed",
+            "r-port",
             "r-package",
-            "databases"
+            "data",
+            "schema",
+            "serlialization",
+            "types",
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/bittrex",
-        "url": "https://github.com/ropensci/bittrex",
-        "rel": "/software/repository/github/ropensci/bittrex",
+        "uid": "github/ropensci/bomrang",
+        "url": "https://github.com/ropensci/bomrang",
+        "rel": "/software/repository/github/ropensci/bomrang",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "A R Client for the Bittrex Crypto-Currency Exchange",
+        "description": "Australian government Bureau of Meteorology (BOM) data client for R",
         "topics": [
-            "crypto-currency-exchanges",
-            "finance",
+            "bom",
+            "meteorological-data",
+            "weather-forecast",
+            "australia",
+            "weather",
+            "weather-data",
+            "meteorology",
             "r",
             "rstats",
+            "australia-bureau-of-meteorology",
             "r-package",
             "peer-reviewed",
-            "cryptocurency-exchange",
-            "cryptocurrency",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/pdftools",
-        "url": "https://github.com/ropensci/pdftools",
-        "rel": "/software/repository/github/ropensci/pdftools",
+        "uid": "github/ropensci/rppo",
+        "url": "https://github.com/ropensci/rppo",
+        "rel": "/software/repository/github/ropensci/rppo",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Text Extraction, Rendering and Converting of PDF Documents",
+        "description": "R package for accessing PPO data store",
         "topics": [
-            "pdf-format",
-            "text-extraction",
-            "poppler-library",
-            "poppler",
             "r",
-            "rstats",
-            "pdf-files",
-            "pdftools",
             "r-package",
-            "literature"
+            "rstats",
+            "peer-reviewed",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/ritis",
-        "url": "https://github.com/ropensci/ritis",
-        "rel": "/software/repository/github/ropensci/ritis",
+        "uid": "github/ropensci/cchecks",
+        "url": "https://github.com/ropensci/cchecks",
+        "rel": "/software/repository/github/ropensci/cchecks",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Integrated Taxonomic Information Service (ITIS) R client",
+        "description": "R client for the cranchecks.info API",
         "topics": [
-            "api-wrapper",
-            "itis",
-            "taxonomy",
             "rstats",
+            "cran",
             "r",
+            "testing",
             "r-package",
-            "taxize",
-            "API",
-            "api-client",
-            "biology",
-            "identifiers",
-            "JSON",
-            "names",
-            "nomenclature",
-            "species",
-            "web"
+            "monitoring",
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/treebase",
-        "url": "https://github.com/ropensci/treebase",
-        "rel": "/software/repository/github/ropensci/treebase",
+        "uid": "github/ropensci/unifir",
+        "url": "https://github.com/ropensci/unifir",
+        "rel": "/software/repository/github/ropensci/unifir",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "An R interface to the treeBASE API (now on CRAN)",
+        "description": "A unifying interface for calling Unity from R",
         "topics": [
-            "r",
             "rstats",
-            "r-package",
-            "data-access"
+            "cran",
+            "cran-r",
+            "r",
+            "unifir",
+            "visualization",
+            "unity",
+            "unity3d"
         ]
     },
     {
-        "uid": "github/ropensci/RNeXML",
-        "url": "https://github.com/ropensci/RNeXML",
-        "rel": "/software/repository/github/ropensci/RNeXML",
+        "uid": "github/ropensci/smapr",
+        "url": "https://github.com/ropensci/smapr",
+        "rel": "/software/repository/github/ropensci/smapr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Implementing semantically rich NeXML I/O in R",
+        "description": "An R package for acquisition and processing of NASA SMAP data",
         "topics": [
+            "nasa",
+            "smap-data",
+            "raster",
+            "extract-data",
+            "acquisition",
+            "soil-moisture",
+            "soil-moisture-sensor",
+            "soil-mapping",
+            "peer-reviewed",
             "r",
-            "rstats",
-            "nexml",
-            "phylogenetics",
             "r-package",
-            "linked-data",
-            "metadata",
-            "data-publication"
+            "rstats",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/getCRUCLdata",
-        "url": "https://github.com/ropensci/getCRUCLdata",
-        "rel": "/software/repository/github/ropensci/getCRUCLdata",
+        "uid": "github/ropensci/rrricanesdata",
+        "url": "https://github.com/ropensci/rrricanesdata",
+        "rel": "/software/repository/github/ropensci/rrricanesdata",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "CRU CL v. 2.0 Climatology Client for R",
+        "description": "Supporting dataset for R package rrricanes",
         "topics": [
-            "cru",
-            "climate-data",
-            "cru-cl2",
-            "temperature",
-            "rainfall",
-            "elevation",
             "r",
-            "data-access",
-            "wind",
-            "relative-humidity",
-            "solar-radiation",
-            "diurnal-temperature",
-            "frost",
+            "weather",
             "rstats",
             "r-package",
-            "peer-reviewed",
-            "anglia-cru"
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/bib2df",
-        "url": "https://github.com/ropensci/bib2df",
-        "rel": "/software/repository/github/ropensci/bib2df",
+        "uid": "github/ropensci/tiler",
+        "url": "https://github.com/ropensci/tiler",
+        "rel": "/software/repository/github/ropensci/tiler",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Parse a BibTeX file to a tibble",
+        "description": "Generate geographic and non-geographic map tiles from R",
         "topics": [
-            "bibtex",
             "r",
-            "rstats",
             "r-package",
-            "peer-reviewed",
-            "data-extraction"
+            "rstats",
+            "geospatial"
         ]
     },
     {
-        "uid": "github/ropensci/rppo",
-        "url": "https://github.com/ropensci/rppo",
-        "rel": "/software/repository/github/ropensci/rppo",
+        "uid": "github/ropensci/babette",
+        "url": "https://github.com/ropensci/babette",
+        "rel": "/software/repository/github/ropensci/babette",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R package for accessing PPO data store",
+        "description": "babette is an R package to work with BEAST2",
         "topics": [
             "r",
             "r-package",
             "rstats",
-            "peer-reviewed",
-            "data-access"
+            "phylogenetics",
+            "beast2",
+            "bayesian-inference",
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/landscapetools",
-        "url": "https://github.com/ropensci/landscapetools",
-        "rel": "/software/repository/github/ropensci/landscapetools",
+        "uid": "github/ropensci/aRxiv",
+        "url": "https://github.com/ropensci/aRxiv",
+        "rel": "/software/repository/github/ropensci/aRxiv",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "\ud83d\udce6 R package for some of the less-glamorous tasks involved in landscape analysis \ud83c\udf0f",
+        "description": "Programmatic interface to the Arxiv API",
         "topics": [
+            "arxiv-api",
+            "arxiv",
+            "arxiv-org",
+            "arxiv-analytics",
             "r",
             "rstats",
-            "raster",
-            "landscape",
-            "landscape-ecology",
-            "visualization",
-            "workflow",
             "r-package",
-            "geospatial"
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/clifro",
-        "url": "https://github.com/ropensci/clifro",
-        "rel": "/software/repository/github/ropensci/clifro",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Easily download and visualise climate data from CliFlo",
+        "uid": "github/ropensci/opentripplanner",
+        "url": "https://github.com/ropensci/opentripplanner",
+        "rel": "/software/repository/github/ropensci/opentripplanner",
+        "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
+        "description": "An API wrapper for OpenTripPlanner (OTP) as an R package",
         "topics": [
             "r",
-            "climate-data",
-            "climate-stations",
-            "national-climate-database",
-            "zealand",
-            "kml",
-            "windrose",
-            "weather",
-            "rstats",
-            "r-package",
-            "api",
-            "cliflo",
-            "climate",
+            "transport",
             "data",
-            "opensci",
-            "rain",
-            "temperature",
-            "wind",
-            "data-access"
-        ]
-    },
-    {
-        "uid": "github/ropensci/mapscanner",
-        "url": "https://github.com/ropensci/mapscanner",
-        "rel": "/software/repository/github/ropensci/mapscanner",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R package to print maps, draw on them, and scan them back in",
-        "topics": [
-            "r-package",
-            "maps",
-            "scan",
-            "spatial",
-            "geospatial"
+            "routing",
+            "opentripplanner",
+            "public-transport",
+            "transportation-planning",
+            "otp",
+            "java",
+            "isochrones"
         ]
     },
     {
-        "uid": "github/ropensci/rrricanes",
-        "url": "https://github.com/ropensci/rrricanes",
-        "rel": "/software/repository/github/ropensci/rrricanes",
+        "uid": "github/ropensci/Rpolyhedra",
+        "url": "https://github.com/ropensci/Rpolyhedra",
+        "rel": "/software/repository/github/ropensci/Rpolyhedra",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Web scraper for Atlantic and east Pacific hurricanes and tropical storms",
+        "description": "A polyhedra database scraped from public available sources using R6 (OOP) and 'rgl' visualizing capabilities. ",
         "topics": [
-            "r",
-            "hurricane",
-            "weather",
-            "rstats",
-            "r-package",
-            "peer-reviewed",
-            "data-access"
+            "polyhedra-database",
+            "geometry",
+            "rgl",
+            "data-extraction"
         ]
     },
     {
-        "uid": "github/ropensci/MODIStsp",
-        "url": "https://github.com/ropensci/MODIStsp",
-        "rel": "/software/repository/github/ropensci/MODIStsp",
+        "uid": "github/ropensci/tabulizer",
+        "url": "https://github.com/ropensci/tabulizer",
+        "rel": "/software/repository/github/ropensci/tabulizer",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "An \"R\" package for automatic download and preprocessing of MODIS Land Products Time Series",
+        "description": "Bindings for Tabula PDF Table Extractor Library",
         "topics": [
-            "modis",
-            "gdal",
+            "tabula",
+            "tabular-data",
+            "pdf",
+            "java",
+            "pdf-document",
             "r",
-            "preprocessing",
-            "time-series",
-            "remote-sensing",
-            "satellite-imagery",
-            "modis-data",
-            "modis-land-products",
-            "peer-reviewed",
             "r-package",
+            "ropensci",
             "rstats",
-            "data-access"
+            "peer-reviewed",
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/dataspice",
-        "url": "https://github.com/ropensci/dataspice",
-        "rel": "/software/repository/github/ropensci/dataspice",
+        "uid": "github/ropensci/tif",
+        "url": "https://github.com/ropensci/tif",
+        "rel": "/software/repository/github/ropensci/tif",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": ":hot_pepper: Create lightweight schema.org descriptions of your datasets",
+        "description": "Text Interchange Formats",
         "topics": [
-            "unconf18",
-            "schema-org",
-            "metadata",
-            "data",
-            "dataset",
-            "r",
+            "text-processing",
+            "corpus",
+            "term-frequency",
+            "tokenizer",
+            "natural-language-processing",
             "r-package",
-            "rstats",
-            "unconf",
-            "data-publication"
-        ]
-    },
-    {
-        "uid": "github/ropensci/skimr",
-        "url": "https://github.com/ropensci/skimr",
-        "rel": "/software/repository/github/ropensci/skimr",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "A frictionless, pipeable approach to dealing with summary statistics",
-        "topics": [
-            "unconf17",
             "r",
-            "summary-statistics",
-            "ropensci",
-            "unconf",
-            "r-package",
             "rstats",
-            "peer-reviewed",
-            "scalereprod"
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/worrms",
-        "url": "https://github.com/ropensci/worrms",
-        "rel": "/software/repository/github/ropensci/worrms",
+        "uid": "github/ropensci/rbhl",
+        "url": "https://github.com/ropensci/rbhl",
+        "rel": "/software/repository/github/ropensci/rbhl",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "World Register of Marine Species R client",
+        "description": "R interface to the Biodiversity Heritage Library (BHL) API",
         "topics": [
-            "taxonomy",
-            "marine-species",
+            "web-api",
+            "biodiversity-heritage-library",
+            "data",
+            "metadata",
             "api-wrapper",
-            "biology",
-            "rstats",
             "r",
+            "rstats",
             "r-package",
-            "taxize",
-            "biological-data",
-            "fish",
-            "marine-biology",
             "API",
-            "api-client",
-            "marine",
-            "science",
+            "BHL",
+            "conservation",
+            "library",
+            "OCR",
             "species",
-            "web",
-            "worms"
+            "taxonomy",
+            "text-mining",
+            "web-services",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/av",
-        "url": "https://github.com/ropensci/av",
-        "rel": "/software/repository/github/ropensci/av",
+        "uid": "github/ropensci/weathercan",
+        "url": "https://github.com/ropensci/weathercan",
+        "rel": "/software/repository/github/ropensci/weathercan",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Working with Video in R",
+        "description": "R package for downloading weather data from Environment and Climate Change Canada",
         "topics": [
+            "weather-data",
+            "environment-canada",
+            "weather-downloader",
             "r",
-            "r-package",
             "rstats",
-            "image-processing"
+            "r-package",
+            "peer-reviewed",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/USAboundariesData",
-        "url": "https://github.com/ropensci/USAboundariesData",
-        "rel": "/software/repository/github/ropensci/USAboundariesData",
+        "uid": "github/ropensci/bittrex",
+        "url": "https://github.com/ropensci/bittrex",
+        "rel": "/software/repository/github/ropensci/bittrex",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Datasets for the 'USAboundaries' package",
+        "description": "A R Client for the Bittrex Crypto-Currency Exchange",
         "topics": [
+            "crypto-currency-exchanges",
+            "finance",
             "r",
             "rstats",
             "r-package",
+            "peer-reviewed",
+            "cryptocurency-exchange",
+            "cryptocurrency",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/nbaR",
-        "url": "https://github.com/ropensci/nbaR",
-        "rel": "/software/repository/github/ropensci/nbaR",
+        "uid": "github/ropensci/jstor",
+        "url": "https://github.com/ropensci/jstor",
+        "rel": "/software/repository/github/ropensci/jstor",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R client library for the Netherlands Biodiversity Api (NBA)",
+        "description": "Import journal data from DfR (JSTOR)",
         "topics": [
+            "jstor",
+            "text-analysis",
+            "text-mining",
             "r",
-            "biodiversity-data",
-            "api-client",
-            "data-access"
+            "peer-reviewed",
+            "r-package",
+            "rstats",
+            "literature"
         ]
     },
     {
@@ -18132,264 +18099,317 @@
         ]
     },
     {
-        "uid": "github/ropensci/jsonld",
-        "url": "https://github.com/ropensci/jsonld",
-        "rel": "/software/repository/github/ropensci/jsonld",
+        "uid": "github/ropensci/zbank",
+        "url": "https://github.com/ropensci/zbank",
+        "rel": "/software/repository/github/ropensci/zbank",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R wrapper for jsonld.js JavaScript library",
+        "description": "ZooBank R client",
         "topics": [
-            "json-ld",
-            "r",
             "rstats",
+            "taxonomy",
+            "zoology",
+            "identifiers",
+            "zoobank",
+            "r",
             "r-package",
-            "data-extraction"
+            "API",
+            "api-client",
+            "biology",
+            "JSON",
+            "names",
+            "nomenclature",
+            "species",
+            "web",
+            "ZooBank",
+            "Zoological"
         ]
     },
     {
-        "uid": "github/ropensci/cld3",
-        "url": "https://github.com/ropensci/cld3",
-        "rel": "/software/repository/github/ropensci/cld3",
+        "uid": "github/ropensci/outsider.base",
+        "url": "https://github.com/ropensci/outsider.base",
+        "rel": "/software/repository/github/ropensci/outsider.base",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Bindings to Google's Compact Language Detector 3 ",
+        "description": "Base package for `outsider`",
         "topics": [
-            "cld",
-            "cld3",
-            "language-detection",
-            "language-detector",
-            "r",
-            "rstats",
-            "r-package",
-            "literature"
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/qualtRics",
-        "url": "https://github.com/ropensci/qualtRics",
-        "rel": "/software/repository/github/ropensci/qualtRics",
+        "uid": "github/ropensci/taxizedb",
+        "url": "https://github.com/ropensci/taxizedb",
+        "rel": "/software/repository/github/ropensci/taxizedb",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Download \u2b07\ufe0f Qualtrics survey data directly into R!",
+        "description": "Tools for Working with Taxonomic SQL Databases",
         "topics": [
-            "qualtrics",
-            "qualtrics-api",
-            "survey",
-            "r",
-            "r-package",
-            "api",
+            "taxonomy",
+            "taxonomic-databases",
+            "itis",
             "rstats",
-            "survey-data",
-            "data-access"
+            "taxize",
+            "r",
+            "r-package"
         ]
     },
     {
-        "uid": "github/ropensci/bikedata",
-        "url": "https://github.com/ropensci/bikedata",
-        "rel": "/software/repository/github/ropensci/bikedata",
+        "uid": "github/ropensci/helminthR",
+        "url": "https://github.com/ropensci/helminthR",
+        "rel": "/software/repository/github/ropensci/helminthR",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": ":bike: Extract data from public hire bicycle systems",
+        "description": "Accesses parasite occurrence records from the London Natural History Museum's Host-Parasite database, which contains over a quarter of a million helminth records.",
         "topics": [
-            "bicycle-hire-systems",
+            "helminth",
+            "parasites",
+            "open-data",
+            "disease-networks",
             "r",
             "rstats",
-            "bike-hire",
-            "bicycle-hire",
-            "database",
-            "bike-data",
             "r-package",
-            "peer-reviewed",
-            "bike-hire-systems",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/fingertipsR",
-        "url": "https://github.com/ropensci/fingertipsR",
-        "rel": "/software/repository/github/ropensci/fingertipsR",
+        "uid": "github/ropensci/rmangal",
+        "url": "https://github.com/ropensci/rmangal",
+        "rel": "/software/repository/github/ropensci/rmangal",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R package to interact with Public Health England\u2019s Fingertips data tool",
+        "description": "Retrieve and explore data from the ecological interactions database MANGAL",
         "topics": [
-            "public-health-england",
-            "fingertips",
-            "health",
-            "open-data",
-            "public-health",
-            "cran",
-            "api-wrapper",
-            "r",
-            "rstats",
-            "r-package",
-            "peer-reviewed",
+            "datapublications",
+            "ecology",
+            "foodwebs",
+            "interactions",
+            "networks",
+            "openaccess",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/beautier",
-        "url": "https://github.com/ropensci/beautier",
-        "rel": "/software/repository/github/ropensci/beautier",
+        "uid": "github/ropensci/outsider",
+        "url": "https://github.com/ropensci/outsider",
+        "rel": "/software/repository/github/ropensci/outsider",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2",
+        "description": ":black_square_button::registered: Install and run programs, outside of R, inside of R",
         "topics": [
-            "r",
-            "r-package",
+            "docker",
             "rstats",
+            "reproducibility",
             "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/gittargets",
-        "url": "https://github.com/ropensci/gittargets",
-        "rel": "/software/repository/github/ropensci/gittargets",
+        "uid": "github/ropensci/rWBclimate",
+        "url": "https://github.com/ropensci/rWBclimate",
+        "rel": "/software/repository/github/ropensci/rWBclimate",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Data version control for reproducible analysis pipelines in R with {targets}.",
+        "description": "R interface for the World Bank climate data",
         "topics": [
-            "data-version-control",
-            "data-versioning",
-            "workflow",
-            "data-science",
             "r",
-            "reproducible-research",
             "rstats",
             "r-package",
-            "reproducibility",
-            "targets"
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/taxadb",
-        "url": "https://github.com/ropensci/taxadb",
-        "rel": "/software/repository/github/ropensci/taxadb",
+        "uid": "github/ropensci/mcbette",
+        "url": "https://github.com/ropensci/mcbette",
+        "rel": "/software/repository/github/ropensci/mcbette",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": ":package: Taxonomic Database",
+        "description": "Model Comparison using babette",
         "topics": [
-            "taxonomy"
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/osmextract",
-        "url": "https://github.com/ropensci/osmextract",
-        "rel": "/software/repository/github/ropensci/osmextract",
+        "uid": "github/ropensci/tinkr",
+        "url": "https://github.com/ropensci/tinkr",
+        "rel": "/software/repository/github/ropensci/tinkr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Download and import OpenStreetMap data from Geofabrik and other providers",
+        "description": "Convert (R)Markdown files to XML, edit them, write them back as (R)Markdown",
         "topics": [
-            "osm",
-            "osm-pbf",
+            "r",
+            "r-package",
             "rstats",
+            "xpath",
+            "commonmark",
+            "xml",
+            "scalereprod"
+        ]
+    },
+    {
+        "uid": "github/ropensci/rb3",
+        "url": "https://github.com/ropensci/rb3",
+        "rel": "/software/repository/github/ropensci/rb3",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "A bunch of downloaders and parsers for data delivered from B3",
+        "topics": [
             "r",
-            "open-data",
-            "geofabrik-zone",
-            "geo",
-            "geospatial"
+            "market-data",
+            "finance",
+            "financial-data",
+            "financial-services",
+            "exchange-data",
+            "brazil"
         ]
     },
     {
-        "uid": "github/ropensci/paleobioDB",
-        "url": "https://github.com/ropensci/paleobioDB",
-        "rel": "/software/repository/github/ropensci/paleobioDB",
+        "uid": "github/ropensci/opencv",
+        "url": "https://github.com/ropensci/opencv",
+        "rel": "/software/repository/github/ropensci/opencv",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R interface to the Paleobiology Database",
+        "description": "R bindings for OpenCV",
         "topics": [
+            "unconf18",
+            "opencv",
+            "opencv-library",
             "r",
+            "r-package",
             "rstats",
+            "unconf",
+            "image-processing"
+        ]
+    },
+    {
+        "uid": "github/ropensci/coder",
+        "url": "https://github.com/ropensci/coder",
+        "rel": "/software/repository/github/ropensci/coder",
+        "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
+        "description": "Classification of Cases into Deterministic Categories",
+        "topics": [
+            "r",
+            "package",
             "r-package",
-            "data-access"
+            "classification",
+            "icd-10",
+            "rstats"
         ]
     },
     {
-        "uid": "github/ropensci/wikitaxa",
-        "url": "https://github.com/ropensci/wikitaxa",
-        "rel": "/software/repository/github/ropensci/wikitaxa",
+        "uid": "github/ropensci/rglobi",
+        "url": "https://github.com/ropensci/rglobi",
+        "rel": "/software/repository/github/ropensci/rglobi",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "taxonomy data from Wikipedia/Wikidata/Wikispecies",
+        "description": "R library to access species interaction data of http://globalbioticinteractions.org",
         "topics": [
-            "taxonomy",
-            "wikipedia-api",
-            "wikispecies",
             "r",
             "rstats",
             "r-package",
-            "taxize",
-            "API",
-            "species",
-            "vernacular",
-            "web-services",
-            "Wikicommons",
-            "Wikipedia",
-            "Wikispecies"
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/ecoengine",
-        "url": "https://github.com/ropensci/ecoengine",
-        "rel": "/software/repository/github/ropensci/ecoengine",
+        "uid": "github/ropensci/opencage",
+        "url": "https://github.com/ropensci/opencage",
+        "rel": "/software/repository/github/ropensci/opencage",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Programmatic interface to the Berkeley Ecoinformatics Engine ",
+        "description": ":globe_with_meridians: R package for the OpenCage API -- both forward and reverse geocoding :globe_with_meridians:",
         "topics": [
+            "rstats",
+            "rspatial",
+            "geocode",
+            "opencage-geocoder",
             "r",
+            "opencage-api",
+            "opencage",
+            "geocoder",
+            "placenames",
+            "r-package",
+            "peer-reviewed",
+            "geospatial"
+        ]
+    },
+    {
+        "uid": "github/ropensci/rgbif",
+        "url": "https://github.com/ropensci/rgbif",
+        "rel": "/software/repository/github/ropensci/rgbif",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Interface to the Global Biodiversity Information Facility API",
+        "topics": [
+            "gbif",
+            "api",
+            "data",
+            "biodiversity",
+            "species",
             "rstats",
-            "ecoengine",
-            "berkeley-ecoinformatics-engine",
+            "r",
             "spocc",
             "r-package",
+            "lifewatch",
+            "oscibio",
+            "API",
+            "GBIF",
+            "occurrences",
+            "specimens",
+            "taxonomy",
+            "web-services",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/tidypmc",
-        "url": "https://github.com/ropensci/tidypmc",
-        "rel": "/software/repository/github/ropensci/tidypmc",
+        "uid": "github/ropensci/dbparser",
+        "url": "https://github.com/ropensci/dbparser",
+        "rel": "/software/repository/github/ropensci/dbparser",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Parse full text XML documents from Pubmed Central",
+        "description": "Source code for the R package, \"dbparser\" (i.e. DrugBank Parser)",
         "topics": [
-            "literature"
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/tif",
-        "url": "https://github.com/ropensci/tif",
-        "rel": "/software/repository/github/ropensci/tif",
+        "uid": "github/ropensci/rcrossref",
+        "url": "https://github.com/ropensci/rcrossref",
+        "rel": "/software/repository/github/ropensci/rcrossref",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Text Interchange Formats",
+        "description": "R client for various CrossRef APIs",
         "topics": [
-            "text-processing",
-            "corpus",
-            "term-frequency",
-            "tokenizer",
-            "natural-language-processing",
-            "r-package",
+            "crossref-api",
+            "doi",
+            "metadata",
+            "api",
             "r",
             "rstats",
+            "api-wrapper",
+            "r-package",
+            "citations",
+            "Crossref",
+            "full-text",
+            "literature",
+            "pdf",
+            "publications",
+            "TDM",
+            "text-ming",
+            "xml",
             "literature"
         ]
     },
     {
-        "uid": "github/ropensci/xslt",
-        "url": "https://github.com/ropensci/xslt",
-        "rel": "/software/repository/github/ropensci/xslt",
+        "uid": "github/ropensci/antiword",
+        "url": "https://github.com/ropensci/antiword",
+        "rel": "/software/repository/github/ropensci/antiword",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Extension of xml2 package for xsl transformations",
+        "description": "R wrapper for antiword utility",
         "topics": [
-            "xslt",
-            "xml",
+            "antiword",
+            "extract-text",
             "r",
             "rstats",
             "r-package",
-            "data-extraction"
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/comtradr",
-        "url": "https://github.com/ropensci/comtradr",
-        "rel": "/software/repository/github/ropensci/comtradr",
+        "uid": "github/ropensci/tesseract",
+        "url": "https://github.com/ropensci/tesseract",
+        "rel": "/software/repository/github/ropensci/tesseract",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Functions for Interacting with the UN Comtrade API",
+        "description": "Bindings to Tesseract OCR engine for R",
         "topics": [
-            "comtrade",
-            "api",
-            "supply-chain",
+            "tesseract",
+            "ocr",
             "r",
             "rstats",
             "r-package",
-            "peer-reviewed",
-            "data-access"
+            "tesseract-ocr",
+            "image-processing"
         ]
     },
     {
@@ -18408,39 +18428,67 @@
         ]
     },
     {
-        "uid": "github/ropensci/microdemic",
-        "url": "https://github.com/ropensci/microdemic",
-        "rel": "/software/repository/github/ropensci/microdemic",
+        "uid": "github/ropensci/rfigshare",
+        "url": "https://github.com/ropensci/rfigshare",
+        "rel": "/software/repository/github/ropensci/rfigshare",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "microsoft academic client",
+        "description": "Programmatic interface for Figshare",
         "topics": [
-            "api-client",
-            "scholarly-articles",
-            "scholarly-metadata",
+            "r",
             "rstats",
+            "r-package",
+            "archiving",
+            "data",
+            "doi",
+            "repository",
+            "data-publication"
+        ]
+    },
+    {
+        "uid": "github/ropensci/pixelclasser",
+        "url": "https://github.com/ropensci/pixelclasser",
+        "rel": "/software/repository/github/ropensci/pixelclasser",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Classifies Image Pixels by Colour",
+        "topics": [
+            "image-processing"
+        ]
+    },
+    {
+        "uid": "github/ropensci/assertr",
+        "url": "https://github.com/ropensci/assertr",
+        "rel": "/software/repository/github/ropensci/assertr",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Assertive programming for R analysis pipelines",
+        "topics": [
+            "predicate-functions",
+            "analysis-pipeline",
+            "assertions",
+            "assertion-methods",
+            "assertion-library",
             "r",
+            "rstats",
             "r-package",
-            "text-mining",
-            "citations",
-            "full-text",
-            "literature",
-            "pdf",
-            "publications",
-            "xml",
-            "literature"
+            "peer-reviewed",
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/bibtex",
-        "url": "https://github.com/ropensci/bibtex",
-        "rel": "/software/repository/github/ropensci/bibtex",
+        "uid": "github/ropensci/lightr",
+        "url": "https://github.com/ropensci/lightr",
+        "rel": "/software/repository/github/ropensci/lightr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "bibtex parser for R",
+        "description": "Import spectral data and related metadata in R",
         "topics": [
-            "bibtex",
-            "parser",
             "r",
-            "literature"
+            "spectroscopy",
+            "spectral-data",
+            "reproducible-research",
+            "reproducible-science",
+            "reproducibility",
+            "r-package",
+            "file-import",
+            "data-extraction"
         ]
     },
     {
@@ -18462,28 +18510,29 @@
         ]
     },
     {
-        "uid": "github/ropensci/piggyback",
-        "url": "https://github.com/ropensci/piggyback",
-        "rel": "/software/repository/github/ropensci/piggyback",
+        "uid": "github/ropensci/tidyqpcr",
+        "url": "https://github.com/ropensci/tidyqpcr",
+        "rel": "/software/repository/github/ropensci/tidyqpcr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": ":package: for using large(r) data files on GitHub",
+        "description": "quantitative PCR analysis in the tidyverse",
         "topics": [
-            "git-lfs",
-            "data-store",
+            "qpcr-analysis",
+            "tidyverse",
             "r",
-            "peer-reviewed",
-            "r-package",
             "rstats",
-            "data-publication"
+            "r-package",
+            "miqe",
+            "qpcr"
         ]
     },
     {
-        "uid": "github/ropensci/rusda",
-        "url": "https://github.com/ropensci/rusda",
-        "rel": "/software/repository/github/ropensci/rusda",
+        "uid": "github/ropensci/essurvey",
+        "url": "https://github.com/ropensci/essurvey",
+        "rel": "/software/repository/github/ropensci/essurvey",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Interface to USDA Databases",
+        "description": "Download data from the European Social Survey",
         "topics": [
+            "ess",
             "r",
             "rstats",
             "r-package",
@@ -18491,914 +18540,782 @@
         ]
     },
     {
-        "uid": "github/ropensci/UCSCXenaTools",
-        "url": "https://github.com/ropensci/UCSCXenaTools",
-        "rel": "/software/repository/github/ropensci/UCSCXenaTools",
-        "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
-        "description": ":package: An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/",
+        "uid": "github/ropensci/circle",
+        "url": "https://github.com/ropensci/circle",
+        "rel": "/software/repository/github/ropensci/circle",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "R client package for the Circle CI API",
         "topics": [
-            "ucsc-xena",
-            "downloader",
+            "continuous-integration",
+            "circle-ci",
             "api-client",
-            "tcga",
-            "ccle",
-            "icgc",
-            "ucsc",
-            "toil",
-            "treehouse",
-            "r",
-            "bioinformatics"
+            "continuous-deployment",
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/tidyhydat",
-        "url": "https://github.com/ropensci/tidyhydat",
-        "rel": "/software/repository/github/ropensci/tidyhydat",
+        "uid": "github/ropensci/sofa",
+        "url": "https://github.com/ropensci/sofa",
+        "rel": "/software/repository/github/ropensci/sofa",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "An R package to import Water Survey of Canada hydrometric data and make it tidy",
+        "description": "easy R interface to CouchDB",
         "topics": [
+            "couchdb",
+            "couchdb-client",
+            "cloudant",
+            "database",
             "r",
-            "tidy-data",
-            "government-data",
-            "water-resources",
             "rstats",
             "r-package",
-            "hydrology",
-            "hydrometrics",
-            "citz",
-            "data-access"
+            "CouchDB",
+            "documents",
+            "NoSQL",
+            "databases"
         ]
     },
     {
-        "uid": "github/ropensci/gistr",
-        "url": "https://github.com/ropensci/gistr",
-        "rel": "/software/repository/github/ropensci/gistr",
+        "uid": "github/ropensci/NLMR",
+        "url": "https://github.com/ropensci/NLMR",
+        "rel": "/software/repository/github/ropensci/NLMR",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Interact with GitHub gists from R",
+        "description": "\ud83d\udce6 R package to simulate neutral landscape models \ud83c\udfd4",
         "topics": [
-            "gists",
-            "github-api",
-            "api-wrapper",
-            "rstats",
             "r",
-            "github-gist",
-            "gist",
+            "spatial",
+            "landscape-ecology",
+            "neutral-landscape-model",
+            "rstats",
             "r-package",
-            "API",
-            "code",
-            "GitHub",
-            "GitHubAPI",
-            "http",
-            "https",
-            "script",
-            "snippet",
-            "web-services",
-            "scalereprod"
-        ]
-    },
-    {
-        "uid": "github/ropensci/refsplitr",
-        "url": "https://github.com/ropensci/refsplitr",
-        "rel": "/software/repository/github/ropensci/refsplitr",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R package for processing, organizing, and visualizing reference records downloaded from the Web of Science. ",
-        "topics": [
-            "bibliometrics",
-            "coauthorship",
-            "collaboration",
-            "georeferencing",
-            "metascience",
-            "namedisambiguation",
-            "references",
-            "scienceofscience",
-            "scientometrics",
-            "WebofScience",
-            "literature"
+            "peer-reviewed",
+            "geospatial"
         ]
     },
     {
-        "uid": "github/ropensci/citecorp",
-        "url": "https://github.com/ropensci/citecorp",
-        "rel": "/software/repository/github/ropensci/citecorp",
+        "uid": "github/ropensci/handlr",
+        "url": "https://github.com/ropensci/handlr",
+        "rel": "/software/repository/github/ropensci/handlr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Client for the Open Citations Corpus",
+        "description": "convert among citation formats",
         "topics": [
-            "opencitations",
             "citations",
             "doi",
-            "pmid",
-            "pmcid",
-            "sparql",
+            "digital-object-identifier",
+            "metadata",
+            "bibtex",
+            "citeproc",
+            "crosscite",
+            "ris",
             "r",
             "r-package",
             "rstats",
-            "bibtex",
             "citation",
-            "metadata",
+            "Citeproc",
+            "Codemeta",
+            "Crosscite",
+            "Crossref",
+            "JSON",
+            "RDF",
+            "RIS",
+            "XML",
             "literature"
         ]
     },
     {
-        "uid": "github/ropensci/timefuzz",
-        "url": "https://github.com/ropensci/timefuzz",
-        "rel": "/software/repository/github/ropensci/timefuzz",
+        "uid": "github/ropensci/Rclean",
+        "url": "https://github.com/ropensci/Rclean",
+        "rel": "/software/repository/github/ropensci/Rclean",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Time Travel to Test Time Dependent Code",
+        "description": "Isolate essential code to re-produce specific results.",
         "topics": [
-            "r",
-            "rstats",
-            "testing",
-            "tdd",
-            "time-dependent",
-            "r-package",
             "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/rdryad",
-        "url": "https://github.com/ropensci/rdryad",
-        "rel": "/software/repository/github/ropensci/rdryad",
+        "uid": "github/ropensci/BaseSet",
+        "url": "https://github.com/ropensci/BaseSet",
+        "rel": "/software/repository/github/ropensci/BaseSet",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R client for Dryad web services",
+        "description": "Provides classes for working with sets",
         "topics": [
-            "dryad-api",
-            "dryad",
-            "data",
-            "doi",
-            "oai-pmh",
             "r",
-            "rstats",
+            "sets",
+            "package",
             "r-package",
-            "data-access"
+            "bioconductor-package",
+            "bioconductor",
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/rfishbase",
-        "url": "https://github.com/ropensci/rfishbase",
-        "rel": "/software/repository/github/ropensci/rfishbase",
+        "uid": "github/ropensci/cyphr",
+        "url": "https://github.com/ropensci/cyphr",
+        "rel": "/software/repository/github/ropensci/cyphr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R interface to the fishbase.org database",
+        "description": ":shipit: Humane encryption",
         "topics": [
+            "encryption",
+            "sodium",
+            "openssl",
             "r",
             "rstats",
             "r-package",
-            "fishbase",
-            "taxonomy",
-            "fish",
-            "data-access"
+            "peer-reviewed",
+            "security"
         ]
     },
     {
-        "uid": "github/ropensci/osmplotr",
-        "url": "https://github.com/ropensci/osmplotr",
-        "rel": "/software/repository/github/ropensci/osmplotr",
+        "uid": "github/ropensci/rfema",
+        "url": "https://github.com/ropensci/rfema",
+        "rel": "/software/repository/github/ropensci/rfema",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Data visualisation using OpenStreetMap objects",
+        "description": " rfema allows users to access The Federal Emergency Management Agency's (FEMA)  publicly available data through their API. The package provides a set of functions to easily navigate and access data  from the National Flood Insurance Program along and FEMA's various disaster aid programs.",
+        "topics": []
+    },
+    {
+        "uid": "github/ropensci/elastic",
+        "url": "https://github.com/ropensci/elastic",
+        "rel": "/software/repository/github/ropensci/elastic",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "R client for the Elasticsearch HTTP API",
         "topics": [
-            "osm",
-            "openstreetmap",
-            "overpass-api",
-            "overpass",
-            "data-visualisation",
-            "highlighting-clusters",
-            "r",
+            "elasticsearch",
+            "http",
+            "database",
+            "database-wrapper",
+            "json",
             "rstats",
+            "r",
             "r-package",
-            "peer-reviewed",
-            "geospatial"
+            "data-science",
+            "etl",
+            "API",
+            "documents",
+            "Elasticsearch",
+            "HTTP",
+            "Java",
+            "JSON",
+            "NoSQL",
+            "search",
+            "databases"
         ]
     },
     {
-        "uid": "github/ropensci/trufflesniffer",
-        "url": "https://github.com/ropensci/trufflesniffer",
-        "rel": "/software/repository/github/ropensci/trufflesniffer",
+        "uid": "github/ropensci/USAboundaries",
+        "url": "https://github.com/ropensci/USAboundaries",
+        "rel": "/software/repository/github/ropensci/USAboundaries",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "snif out truffles (secrets) [passwords, tokens, api keys]",
+        "description": "Historical and Contemporary Boundaries of the United States of America",
         "topics": [
+            "spatial-data",
+            "history",
+            "digital-history",
             "r",
             "rstats",
-            "secrets",
             "r-package",
-            "truffle",
-            "http-tools"
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/tidyqpcr",
-        "url": "https://github.com/ropensci/tidyqpcr",
-        "rel": "/software/repository/github/ropensci/tidyqpcr",
+        "uid": "github/ropensci/spelling",
+        "url": "https://github.com/ropensci/spelling",
+        "rel": "/software/repository/github/ropensci/spelling",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "quantitative PCR analysis in the tidyverse",
+        "description": "Tools for Spell Checking in R",
         "topics": [
-            "qpcr-analysis",
-            "tidyverse",
+            "spell-check",
+            "spell-checker",
             "r",
             "rstats",
+            "spelling",
+            "spellcheck",
+            "spellchecker",
             "r-package",
-            "miqe",
-            "qpcr"
+            "data-extraction"
         ]
     },
     {
-        "uid": "github/ropensci/skynet",
-        "url": "https://github.com/ropensci/skynet",
-        "rel": "/software/repository/github/ropensci/skynet",
+        "uid": "github/ropensci/taxview",
+        "url": "https://github.com/ropensci/taxview",
+        "rel": "/software/repository/github/ropensci/taxview",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Generates networks from BTS DB1B/T-100 data",
+        "description": "Summarise and visualize data sets wrt taxonomy",
         "topics": [
-            "db1b",
-            "transtats",
-            "bureau-of-transport-statistics",
-            "bts",
-            "rita",
-            "t100",
-            "air-transport",
-            "skynet",
-            "peer-reviewed",
             "r",
-            "r-package",
             "rstats",
-            "data-access"
+            "r-package",
+            "taxonomy"
         ]
     },
     {
-        "uid": "github/ropensci/hoardr",
-        "url": "https://github.com/ropensci/hoardr",
-        "rel": "/software/repository/github/ropensci/hoardr",
+        "uid": "github/ropensci/cRegulome",
+        "url": "https://github.com/ropensci/cRegulome",
+        "rel": "/software/repository/github/ropensci/cRegulome",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "manage cached files",
+        "description": "An R package to access, manage and visualize regulome (microRNA/transcription factors)-gene correlations in cancer",
         "topics": [
-            "caching",
             "r",
+            "database",
+            "datascience",
+            "cancer-genomics",
+            "tcga-data",
+            "transcription-factors",
+            "microrna",
             "rstats",
             "r-package",
-            "data",
-            "files",
-            "pdf",
-            "xml",
-            "scalereprod"
+            "peer-reviewed",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/rmangal",
-        "url": "https://github.com/ropensci/rmangal",
-        "rel": "/software/repository/github/ropensci/rmangal",
+        "uid": "github/ropensci/rsat",
+        "url": "https://github.com/ropensci/rsat",
+        "rel": "/software/repository/github/ropensci/rsat",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Retrieve and explore data from the ecological interactions database MANGAL",
+        "description": "Dealing with Multiplatform Satellite Images from Landsat, MODIS, and Sentinel ",
         "topics": [
-            "datapublications",
-            "ecology",
-            "foodwebs",
-            "interactions",
-            "networks",
-            "openaccess",
-            "data-access"
+            "satellite-images",
+            "geospatial"
         ]
     },
     {
-        "uid": "github/ropensci/aRxiv",
-        "url": "https://github.com/ropensci/aRxiv",
-        "rel": "/software/repository/github/ropensci/aRxiv",
+        "uid": "github/ropensci/webmockr",
+        "url": "https://github.com/ropensci/webmockr",
+        "rel": "/software/repository/github/ropensci/webmockr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Programmatic interface to the Arxiv API",
+        "description": "R library for stubbing and setting expectations on HTTP requests",
         "topics": [
-            "arxiv-api",
-            "arxiv",
-            "arxiv-org",
-            "arxiv-analytics",
-            "r",
+            "http",
+            "http-mocking",
             "rstats",
+            "http-mock",
+            "mock",
+            "fakeweb",
+            "tdd",
+            "testing-tools",
+            "testing",
+            "r",
             "r-package",
-            "literature"
+            "API",
+            "curl",
+            "https",
+            "mocking",
+            "web-services",
+            "http-tools"
         ]
     },
     {
-        "uid": "github/ropensci/rnpn",
-        "url": "https://github.com/ropensci/rnpn",
-        "rel": "/software/repository/github/ropensci/rnpn",
+        "uid": "github/ropensci/pubchunks",
+        "url": "https://github.com/ropensci/pubchunks",
+        "rel": "/software/repository/github/ropensci/pubchunks",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R client for the National Phenology Network database API",
+        "description": "Get chunks of XML format scholarly articles",
         "topics": [
-            "web-api",
-            "species",
-            "data",
+            "text-mining",
+            "literature",
+            "open-access",
+            "xml",
             "rstats",
             "r",
-            "national-phenology-network",
-            "phenology",
             "r-package",
-            "data-access"
+            "citations",
+            "full-text",
+            "pdf",
+            "publications",
+            "TDM",
+            "text-ming"
         ]
     },
     {
-        "uid": "github/ropensci/RSelenium",
-        "url": "https://github.com/ropensci/RSelenium",
-        "rel": "/software/repository/github/ropensci/RSelenium",
+        "uid": "github/ropensci/beastier",
+        "url": "https://github.com/ropensci/beastier",
+        "rel": "/software/repository/github/ropensci/beastier",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "An R client for Selenium Remote WebDriver",
+        "description": "R package to run BEAST2",
         "topics": [
-            "rselenium",
-            "webdriver",
-            "selenium",
             "r",
-            "rstats",
             "r-package",
-            "http-tools"
-        ]
-    },
-    {
-        "uid": "github/ropensci/unifir",
-        "url": "https://github.com/ropensci/unifir",
-        "rel": "/software/repository/github/ropensci/unifir",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "A unifying interface for calling Unity from R",
-        "topics": [
             "rstats",
-            "cran",
-            "cran-r",
-            "r",
-            "unifir",
-            "visualization",
-            "unity",
-            "unity3d"
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/fauxpas",
-        "url": "https://github.com/ropensci/fauxpas",
-        "rel": "/software/repository/github/ropensci/fauxpas",
+        "uid": "github/ropensci/tic",
+        "url": "https://github.com/ropensci/tic",
+        "rel": "/software/repository/github/ropensci/tic",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "fauxpas does http errors",
+        "description": "Tasks Integrating Continuously: CI-Agnostic Workflow Definitions",
         "topics": [
-            "http",
-            "error-handling",
-            "rstats",
             "r",
+            "travis-ci",
+            "appveyor",
+            "continuous-integration",
+            "deployment",
             "r-package",
-            "API",
-            "curl",
-            "error",
-            "errors",
-            "https",
-            "web-services",
-            "http-tools"
+            "rstats",
+            "githubactions",
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/brranching",
-        "url": "https://github.com/ropensci/brranching",
-        "rel": "/software/repository/github/ropensci/brranching",
+        "uid": "github/ropensci/taxlist",
+        "url": "https://github.com/ropensci/taxlist",
+        "rel": "/software/repository/github/ropensci/taxlist",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "I can haz all the phylogenies",
+        "description": "Handling taxonomic lists",
         "topics": [
-            "rstats",
-            "phylogeny",
-            "phylogenies",
-            "r",
-            "r-package",
-            "molecular",
-            "phylomatic",
-            "plants",
-            "tree",
-            "data-access"
+            "taxonomy"
         ]
     },
     {
-        "uid": "github/ropensci/weathercan",
-        "url": "https://github.com/ropensci/weathercan",
-        "rel": "/software/repository/github/ropensci/weathercan",
+        "uid": "github/ropensci/taxa",
+        "url": "https://github.com/ropensci/taxa",
+        "rel": "/software/repository/github/ropensci/taxa",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R package for downloading weather data from Environment and Climate Change Canada",
+        "description": "taxonomic classes for R",
         "topics": [
-            "weather-data",
-            "environment-canada",
-            "weather-downloader",
-            "r",
+            "taxonomy",
+            "taxon",
+            "data-cleaning",
             "rstats",
+            "r",
             "r-package",
-            "peer-reviewed",
-            "data-access"
+            "biology",
+            "hierarchy"
         ]
     },
     {
-        "uid": "github/ropensci/cde",
-        "url": "https://github.com/ropensci/cde",
-        "rel": "/software/repository/github/ropensci/cde",
+        "uid": "github/ropensci/dittodb",
+        "url": "https://github.com/ropensci/dittodb",
+        "rel": "/software/repository/github/ropensci/dittodb",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Repo for R package to query and download WFD data from the EA Catchment Data Explorer site",
+        "description": "dittodb: A Test Environment for DB Queries in R",
         "topics": [
-            "data-access"
+            "databases"
         ]
     },
     {
-        "uid": "github/ropensci/rsat",
-        "url": "https://github.com/ropensci/rsat",
-        "rel": "/software/repository/github/ropensci/rsat",
+        "uid": "github/ropensci/tracerer",
+        "url": "https://github.com/ropensci/tracerer",
+        "rel": "/software/repository/github/ropensci/tracerer",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Dealing with Multiplatform Satellite Images from Landsat, MODIS, and Sentinel ",
+        "description": "tracerer, 'Tracer for R', is an R package to work with the output of BEAST2",
         "topics": [
-            "satellite-images",
-            "geospatial"
+            "r",
+            "r-package",
+            "rstats",
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/virtuoso",
-        "url": "https://github.com/ropensci/virtuoso",
-        "rel": "/software/repository/github/ropensci/virtuoso",
+        "uid": "github/ropensci/outcomerate",
+        "url": "https://github.com/ropensci/outcomerate",
+        "rel": "/software/repository/github/ropensci/outcomerate",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": ":package: Interact with Virtuoso Open Source database instances from R",
+        "description": "AAPOR Survey Outcome Rates",
         "topics": [
-            "databases"
+            "r",
+            "survey",
+            "aapor",
+            "standards",
+            "disposition-codes",
+            "peer-reviewed",
+            "r-package",
+            "rstats",
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/infx",
-        "url": "https://github.com/ropensci/infx",
-        "rel": "/software/repository/github/ropensci/infx",
+        "uid": "github/ropensci/hydroscoper",
+        "url": "https://github.com/ropensci/hydroscoper",
+        "rel": "/software/repository/github/ropensci/hydroscoper",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Access to InfectX/TargetInfectX screening data from R",
+        "description": "R interface to the Greek National Data Bank for Hydrometeorological Information",
         "topics": [
+            "climate",
+            "hydroscope",
+            "hydrometeorology",
+            "hydrology",
+            "tidy-data",
+            "time-series",
+            "greece",
+            "water-resources",
+            "meteorological-stations",
+            "meteorological-data",
             "r",
+            "rstats",
             "r-package",
-            "api-client",
-            "openbis",
             "peer-reviewed",
-            "rstats",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/phonfieldwork",
-        "url": "https://github.com/ropensci/phonfieldwork",
-        "rel": "/software/repository/github/ropensci/phonfieldwork",
+        "uid": "github/ropensci/rdefra",
+        "url": "https://github.com/ropensci/rdefra",
+        "rel": "/software/repository/github/ropensci/rdefra",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R package for phonetic research and experimenting",
+        "description": "rdefra: Interact with the UK AIR Pollution Database from DEFRA",
         "topics": [
             "r",
-            "phonetics",
-            "phonology",
-            "fieldwork",
-            "praat",
-            "textgrid",
-            "elan",
-            "eaf",
-            "exmaralda",
-            "exb",
-            "flextext",
-            "audacity",
-            "srt-subtitles",
-            "data-extraction"
+            "rstats",
+            "r-package",
+            "uk",
+            "defra",
+            "air-pollution",
+            "air-quality",
+            "air-pollution-levels",
+            "peer-reviewed",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/mapr",
-        "url": "https://github.com/ropensci/mapr",
-        "rel": "/software/repository/github/ropensci/mapr",
+        "uid": "github/ropensci/internetarchive",
+        "url": "https://github.com/ropensci/internetarchive",
+        "rel": "/software/repository/github/ropensci/internetarchive",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Map species occurrence data",
+        "description": "Search the Internet Archive, retrieve metadata, and download files",
         "topics": [
-            "rstats",
-            "ggplot2",
-            "leaflet",
-            "map",
-            "mapping",
-            "biodiversity",
             "r",
-            "spocc",
+            "rstats",
             "r-package",
-            "ggplot",
-            "interactive",
-            "maps",
-            "occurrences",
-            "geospatial"
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/rdataretriever",
-        "url": "https://github.com/ropensci/rdataretriever",
-        "rel": "/software/repository/github/ropensci/rdataretriever",
-        "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
-        "description": "R interface to the Data Retriever",
+        "uid": "github/ropensci/codemetar",
+        "url": "https://github.com/ropensci/codemetar",
+        "rel": "/software/repository/github/ropensci/codemetar",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "an R package for generating and working with codemeta",
         "topics": [
-            "science",
-            "data",
-            "data-science",
-            "database",
-            "datasets",
+            "metadata",
+            "json-ld",
+            "codemeta",
             "r",
             "rstats",
-            "r-package"
+            "r-package",
+            "peer-reviewed",
+            "citation",
+            "credit",
+            "linked-data",
+            "ropensci",
+            "data-publication"
         ]
     },
     {
-        "uid": "github/ropensci/textreuse",
-        "url": "https://github.com/ropensci/textreuse",
-        "rel": "/software/repository/github/ropensci/textreuse",
+        "uid": "github/ropensci/nodbi",
+        "url": "https://github.com/ropensci/nodbi",
+        "rel": "/software/repository/github/ropensci/nodbi",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Detect text reuse and document similarity",
+        "description": "Document DBI connector for R",
         "topics": [
-            "r",
             "rstats",
+            "database",
+            "nosql",
+            "couchdb",
+            "mongodb",
+            "elasticsearch",
+            "r",
             "r-package",
-            "peer-reviewed",
-            "literature"
+            "sqlite",
+            "CouchDB",
+            "documents",
+            "Elasticsearch",
+            "JSON",
+            "MongoDB",
+            "NoSQL",
+            "PostgreSQL",
+            "SQLite",
+            "databases"
         ]
     },
     {
-        "uid": "github/ropensci/natserv",
-        "url": "https://github.com/ropensci/natserv",
-        "rel": "/software/repository/github/ropensci/natserv",
+        "uid": "github/ropensci/rfishbase",
+        "url": "https://github.com/ropensci/rfishbase",
+        "rel": "/software/repository/github/ropensci/rfishbase",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "NatureServe R client",
+        "description": "R interface to the fishbase.org database",
         "topics": [
             "r",
             "rstats",
             "r-package",
+            "fishbase",
             "taxonomy",
-            "taxize",
-            "API",
-            "maps",
-            "metadata",
-            "NatureServe",
-            "species",
-            "web-services",
+            "fish",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/seasl",
-        "url": "https://github.com/ropensci/seasl",
-        "rel": "/software/repository/github/ropensci/seasl",
+        "uid": "github/ropensci/treestartr",
+        "url": "https://github.com/ropensci/treestartr",
+        "rel": "/software/repository/github/ropensci/treestartr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Load CSL styles and locales in R, and inspect contents",
+        "description": "An R package for making starting trees from combined molecular, morphological and stratigraphic data",
         "topics": [
             "r",
             "r-package",
             "rstats",
-            "citeproc",
-            "citations",
-            "literature",
-            "parse",
-            "style",
-            "text-ming",
-            "literature"
+            "data-extraction"
         ]
     },
     {
-        "uid": "github/ropensci/rAvis",
-        "url": "https://github.com/ropensci/rAvis",
-        "rel": "/software/repository/github/ropensci/rAvis",
+        "uid": "github/ropensci/tarchetypes",
+        "url": "https://github.com/ropensci/tarchetypes",
+        "rel": "/software/repository/github/ropensci/tarchetypes",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "rAvis: an R-package to download the information stored in \u201cproyectoavis\u201d, a citizen science bird project. ",
+        "description": "Archetypes for targets and pipelines",
         "topics": [
+            "reproducibility",
+            "high-performance-computing",
             "r",
+            "data-science",
             "rstats",
-            "avis",
-            "citizen-science",
-            "bird",
-            "birds",
-            "proyectoavis",
+            "pipeline",
             "r-package",
-            "data-access"
+            "workflow",
+            "targets",
+            "r-targetopia",
+            "peer-reviewed",
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/c14bazAAR",
-        "url": "https://github.com/ropensci/c14bazAAR",
-        "rel": "/software/repository/github/ropensci/c14bazAAR",
+        "uid": "github/ropensci/rcites",
+        "url": "https://github.com/ropensci/rcites",
+        "rel": "/software/repository/github/ropensci/rcites",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R Package - Download and Prepare C14 Dates from Different Source Databases",
+        "description": ":package: R package to access the CITES Speciesplus database ",
         "topics": [
-            "radiocarbon-dates",
-            "archaeology",
+            "cites",
+            "api-client",
+            "trade",
+            "endangered-species",
+            "r-package",
+            "database",
             "r",
+            "rstats",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/refimpact",
-        "url": "https://github.com/ropensci/refimpact",
-        "rel": "/software/repository/github/ropensci/refimpact",
+        "uid": "github/ropensci/cde",
+        "url": "https://github.com/ropensci/cde",
+        "rel": "/software/repository/github/ropensci/cde",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "API wrapper for UK Research Excellence Framework 2014 Impact Case Studies Database",
+        "description": "Repo for R package to query and download WFD data from the EA Catchment Data Explorer site",
         "topics": [
-            "uk",
-            "research-funding",
-            "research-improvement",
-            "directed-graph",
-            "directed-graphs",
-            "text-mining",
-            "research-policy",
-            "r",
-            "rstats",
-            "r-package",
-            "peer-reviewed",
-            "literature"
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/slopes",
-        "url": "https://github.com/ropensci/slopes",
-        "rel": "/software/repository/github/ropensci/slopes",
+        "uid": "github/ropensci/mapscanner",
+        "url": "https://github.com/ropensci/mapscanner",
+        "rel": "/software/repository/github/ropensci/mapscanner",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Package to calculate slopes of roads, rivers and trajectories",
+        "description": "R package to print maps, draw on them, and scan them back in",
         "topics": [
+            "r-package",
+            "maps",
+            "scan",
+            "spatial",
             "geospatial"
         ]
     },
     {
-        "uid": "github/ropensci/USAboundaries",
-        "url": "https://github.com/ropensci/USAboundaries",
-        "rel": "/software/repository/github/ropensci/USAboundaries",
+        "uid": "github/ropensci/rcitoid",
+        "url": "https://github.com/ropensci/rcitoid",
+        "rel": "/software/repository/github/ropensci/rcitoid",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Historical and Contemporary Boundaries of the United States of America",
+        "description": "Citation data via Wikimedia using the Citoid service ",
         "topics": [
-            "spatial-data",
-            "history",
-            "digital-history",
             "r",
             "rstats",
+            "api-client",
+            "wikimedia",
+            "citoid",
+            "doi",
+            "pmid",
+            "pmcid",
+            "isbn",
             "r-package",
-            "data-access"
+            "citations",
+            "Citoid",
+            "literature",
+            "publications",
+            "text-ming",
+            "Wikicite",
+            "Wikipedia",
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/roadoi",
-        "url": "https://github.com/ropensci/roadoi",
-        "rel": "/software/repository/github/ropensci/roadoi",
+        "uid": "github/ropensci/allodb",
+        "url": "https://github.com/ropensci/allodb",
+        "rel": "/software/repository/github/ropensci/allodb",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Use Unpaywall with R",
+        "description": "An R package for biomass estimation at extratropical forest plots.",
         "topics": [
-            "open-access",
-            "oadoi",
-            "r",
-            "webclient",
-            "code4lib",
-            "altmetrics",
-            "rstats",
-            "r-package",
-            "peer-reviewed",
-            "unpaywall",
-            "literature"
+            "data-extraction"
         ]
     },
     {
-        "uid": "github/ropensci/rnaturalearth",
-        "url": "https://github.com/ropensci/rnaturalearth",
-        "rel": "/software/repository/github/ropensci/rnaturalearth",
+        "uid": "github/ropensci/phylotaR",
+        "url": "https://github.com/ropensci/phylotaR",
+        "rel": "/software/repository/github/ropensci/phylotaR",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "an R package to hold and facilitate interaction with natural earth map data :earth_africa:",
+        "description": "An automated pipeline for retrieving orthologous DNA sequences from GenBank in R",
         "topics": [
-            "peer-reviewed",
+            "sequence-alignment",
+            "blastn",
+            "phylogenetics",
             "r",
+            "genbank",
+            "peer-reviewed",
             "r-package",
             "rstats",
-            "geospatial"
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/mauricer",
-        "url": "https://github.com/ropensci/mauricer",
-        "rel": "/software/repository/github/ropensci/mauricer",
+        "uid": "github/ropensci/chlorpromazineR",
+        "url": "https://github.com/ropensci/chlorpromazineR",
+        "rel": "/software/repository/github/ropensci/chlorpromazineR",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Install BEAST2 packages from R",
+        "description": "Calculate chlorpromazine-equivalent doses in R",
         "topics": [
+            "psychiatry",
+            "pharmacology",
             "r",
-            "r-package",
-            "rstats",
+            "antipsychotic",
+            "schizophrenia",
             "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/rgnparser",
-        "url": "https://github.com/ropensci/rgnparser",
-        "rel": "/software/repository/github/ropensci/rgnparser",
+        "uid": "github/ropensci/taxize",
+        "url": "https://github.com/ropensci/taxize",
+        "rel": "/software/repository/github/ropensci/taxize",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Parse scientific names using gnparser (https://github.com/gnames/gnparser)",
+        "description": "A taxonomic toolbelt for R",
         "topics": [
-            "r",
-            "rstats",
             "taxonomy",
-            "r-package"
-        ]
-    },
-    {
-        "uid": "github/ropensci/colocr",
-        "url": "https://github.com/ropensci/colocr",
-        "rel": "/software/repository/github/ropensci/colocr",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "An R package for conducting co-localization analysis. Edit",
-        "topics": [
-            "image-analysis",
-            "colocalization",
+            "data",
+            "api",
+            "biodiversity",
+            "biology",
+            "rstats",
+            "nomenclature",
+            "darwincore",
+            "taxize",
+            "api-wrapper",
             "r",
             "r-package",
-            "rstats",
-            "data-extraction"
-        ]
-    },
-    {
-        "uid": "github/ropensci/circle",
-        "url": "https://github.com/ropensci/circle",
-        "rel": "/software/repository/github/ropensci/circle",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R client package for the Circle CI API",
-        "topics": [
-            "continuous-integration",
-            "circle-ci",
+            "API",
             "api-client",
-            "continuous-deployment",
-            "scalereprod"
+            "identifiers",
+            "JSON",
+            "names",
+            "species",
+            "web"
         ]
     },
     {
-        "uid": "github/ropensci/treestartr",
-        "url": "https://github.com/ropensci/treestartr",
-        "rel": "/software/repository/github/ropensci/treestartr",
+        "uid": "github/ropensci/cffr",
+        "url": "https://github.com/ropensci/cffr",
+        "rel": "/software/repository/github/ropensci/cffr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "An R package for making starting trees from combined molecular, morphological and stratigraphic data",
+        "description": "Generate Citation File Format (cff) Metadata for R Packages",
         "topics": [
             "r",
             "r-package",
-            "rstats",
-            "data-extraction"
+            "attribution",
+            "citation-files",
+            "citation",
+            "citation-file-format"
         ]
     },
     {
-        "uid": "github/ropensci/jqr",
-        "url": "https://github.com/ropensci/jqr",
-        "rel": "/software/repository/github/ropensci/jqr",
+        "uid": "github/ropensci/isdparser",
+        "url": "https://github.com/ropensci/isdparser",
+        "rel": "/software/repository/github/ropensci/isdparser",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R interface to jq ",
+        "description": "NOAA ISD/ISH file parser",
         "topics": [
-            "json",
+            "noaa",
+            "climate",
             "rstats",
-            "jq",
-            "r",
-            "r-package",
-            "data-extraction"
-        ]
-    },
-    {
-        "uid": "github/ropensci/neotoma",
-        "url": "https://github.com/ropensci/neotoma",
-        "rel": "/software/repository/github/ropensci/neotoma",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Programmatic R interface to the Neotoma Paleoecological Database.",
-        "topics": [
+            "isd",
+            "noaa-isd",
             "r",
-            "rstats",
             "r-package",
-            "neotoma-database",
-            "neotoma-apis",
-            "neotoma",
-            "cran",
-            "paleoecology",
-            "nsf",
+            "data",
+            "ISD",
+            "NOAA",
+            "stations",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/jstor",
-        "url": "https://github.com/ropensci/jstor",
-        "rel": "/software/repository/github/ropensci/jstor",
+        "uid": "github/ropensci/wateRinfo",
+        "url": "https://github.com/ropensci/wateRinfo",
+        "rel": "/software/repository/github/ropensci/wateRinfo",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Import journal data from DfR (JSTOR)",
+        "description": "R package to download time series data from waterinfo.be",
         "topics": [
-            "jstor",
-            "text-analysis",
-            "text-mining",
             "r",
-            "peer-reviewed",
+            "package",
+            "api",
+            "ropensci",
+            "open-science",
+            "water",
+            "weather",
+            "climate",
             "r-package",
             "rstats",
-            "literature"
-        ]
-    },
-    {
-        "uid": "github/ropensci/magick",
-        "url": "https://github.com/ropensci/magick",
-        "rel": "/software/repository/github/ropensci/magick",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Magic, madness, heaven, sin",
-        "topics": [
-            "magick",
-            "imagemagick-wrapper",
-            "image-processing",
-            "image-manipulation",
-            "r",
-            "rstats",
-            "image-magick",
-            "imagemagick",
-            "r-package"
-        ]
-    },
-    {
-        "uid": "github/ropensci/essurvey",
-        "url": "https://github.com/ropensci/essurvey",
-        "rel": "/software/repository/github/ropensci/essurvey",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Download data from the European Social Survey",
-        "topics": [
-            "ess",
-            "r",
-            "rstats",
-            "r-package",
+            "lifewatch",
+            "oscibio",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/robotstxt",
-        "url": "https://github.com/ropensci/robotstxt",
-        "rel": "/software/repository/github/ropensci/robotstxt",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "robots.txt file parsing and checking for R",
-        "topics": [
-            "robotstxt",
-            "crawler",
-            "webscraping",
-            "spider",
-            "scraper",
-            "r",
-            "rstats",
-            "r-package",
-            "peer-reviewed",
-            "http-tools"
-        ]
-    },
-    {
-        "uid": "github/ropensci/codemetar",
-        "url": "https://github.com/ropensci/codemetar",
-        "rel": "/software/repository/github/ropensci/codemetar",
+        "uid": "github/ropensci/dataaimsr",
+        "url": "https://github.com/ropensci/dataaimsr",
+        "rel": "/software/repository/github/ropensci/dataaimsr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "an R package for generating and working with codemeta",
+        "description": "Australian Institute of Marine Science (AIMS) Data Platform API Client which provides easy access to AIMS Data Platform scientific data and information.",
         "topics": [
-            "metadata",
-            "json-ld",
-            "codemeta",
-            "r",
-            "rstats",
-            "r-package",
-            "peer-reviewed",
-            "citation",
-            "credit",
-            "linked-data",
-            "ropensci",
-            "data-publication"
+            "aims",
+            "data",
+            "monitoring",
+            "weather",
+            "sst",
+            "australia",
+            "marine"
         ]
     },
     {
-        "uid": "github/ropensci/bold",
-        "url": "https://github.com/ropensci/bold",
-        "rel": "/software/repository/github/ropensci/bold",
+        "uid": "github/ropensci/gistr",
+        "url": "https://github.com/ropensci/gistr",
+        "rel": "/software/repository/github/ropensci/gistr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Interface to the Bold Systems barcode webservice",
+        "description": "Interact with GitHub gists from R",
         "topics": [
+            "gists",
+            "github-api",
             "api-wrapper",
-            "barcodes",
-            "sequences",
-            "r",
-            "rstats",
-            "r-package",
-            "taxize",
-            "barcode",
-            "biodiversity",
-            "DNA",
-            "fasta",
-            "data-access"
-        ]
-    },
-    {
-        "uid": "github/ropensci/onekp",
-        "url": "https://github.com/ropensci/onekp",
-        "rel": "/software/repository/github/ropensci/onekp",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Access sequences from the 1000 Plant Initiative (1KP)",
-        "topics": [
-            "r",
             "rstats",
-            "r-package",
-            "data-access"
-        ]
-    },
-    {
-        "uid": "github/ropensci/bowerbird",
-        "url": "https://github.com/ropensci/bowerbird",
-        "rel": "/software/repository/github/ropensci/bowerbird",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Keep a collection of sparkly data resources",
-        "topics": [
             "r",
-            "rstats",
+            "github-gist",
+            "gist",
             "r-package",
-            "peer-reviewed",
-            "Antarctic",
-            "climate",
-            "data",
-            "environmental",
-            "ropensci",
-            "satellite",
-            "SouthernOcean",
+            "API",
+            "code",
+            "GitHub",
+            "GitHubAPI",
+            "http",
+            "https",
+            "script",
+            "snippet",
+            "web-services",
             "scalereprod"
         ]
     },
@@ -19422,18 +19339,16 @@
         ]
     },
     {
-        "uid": "github/ropensci/osmapiR",
-        "url": "https://github.com/ropensci/osmapiR",
-        "rel": "/software/repository/github/ropensci/osmapiR",
+        "uid": "github/ropensci/rnaturalearthhires",
+        "url": "https://github.com/ropensci/rnaturalearthhires",
+        "rel": "/software/repository/github/ropensci/rnaturalearthhires",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "An R interface to OpenStreetMap API for fetching and saving data from/to the OpenStreetMap database",
+        "description": "high resolution naturalearth data for rnaturalearth",
         "topics": [
-            "openstreetmap",
-            "openstreetmap-api",
-            "osm",
             "r",
             "r-package",
-            "osmapi"
+            "rstats",
+            "data-access"
         ]
     },
     {
@@ -19453,295 +19368,311 @@
         ]
     },
     {
-        "uid": "github/ropensci/rfema",
-        "url": "https://github.com/ropensci/rfema",
-        "rel": "/software/repository/github/ropensci/rfema",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": " rfema allows users to access The Federal Emergency Management Agency's (FEMA)  publicly available data through their API. The package provides a set of functions to easily navigate and access data  from the National Flood Insurance Program along and FEMA's various disaster aid programs.",
-        "topics": []
-    },
-    {
-        "uid": "github/ropensci/sofa",
-        "url": "https://github.com/ropensci/sofa",
-        "rel": "/software/repository/github/ropensci/sofa",
+        "uid": "github/ropensci/traits",
+        "url": "https://github.com/ropensci/traits",
+        "rel": "/software/repository/github/ropensci/traits",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "easy R interface to CouchDB",
+        "description": "Species traits data",
         "topics": [
-            "couchdb",
-            "couchdb-client",
-            "cloudant",
-            "database",
+            "traits",
+            "species",
+            "api-client",
             "r",
             "rstats",
             "r-package",
-            "CouchDB",
-            "documents",
-            "NoSQL",
-            "databases"
+            "API",
+            "taxonomy",
+            "web-services",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/chromer",
-        "url": "https://github.com/ropensci/chromer",
-        "rel": "/software/repository/github/ropensci/chromer",
+        "uid": "github/ropensci/worrms",
+        "url": "https://github.com/ropensci/worrms",
+        "rel": "/software/repository/github/ropensci/worrms",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "package for interacting with the chromosome counts database (CCDB) at http://ccdb.tau.ac.il",
+        "description": "World Register of Marine Species R client",
         "topics": [
-            "r",
+            "taxonomy",
+            "marine-species",
+            "api-wrapper",
+            "biology",
             "rstats",
+            "r",
             "r-package",
-            "data-access"
+            "taxize",
+            "biological-data",
+            "fish",
+            "marine-biology",
+            "API",
+            "api-client",
+            "marine",
+            "science",
+            "species",
+            "web",
+            "worms"
         ]
     },
     {
-        "uid": "github/ropensci/rrlite",
-        "url": "https://github.com/ropensci/rrlite",
-        "rel": "/software/repository/github/ropensci/rrlite",
+        "uid": "github/ropensci/finch",
+        "url": "https://github.com/ropensci/finch",
+        "rel": "/software/repository/github/ropensci/finch",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R interface to rlite https://github.com/seppo0010/rlite",
+        "description": "Read Darwin Core Archive files",
         "topics": [
-            "r",
             "rstats",
+            "darwin-core",
+            "darwincore",
+            "biodiversity",
+            "gbif",
+            "r",
             "r-package",
-            "peer-reviewed",
-            "databases"
+            "biology",
+            "collections",
+            "occurrences",
+            "species",
+            "specimen",
+            "data-extraction"
         ]
     },
     {
-        "uid": "github/ropensci/NLMR",
-        "url": "https://github.com/ropensci/NLMR",
-        "rel": "/software/repository/github/ropensci/NLMR",
+        "uid": "github/ropensci/rdhs",
+        "url": "https://github.com/ropensci/rdhs",
+        "rel": "/software/repository/github/ropensci/rdhs",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "\ud83d\udce6 R package to simulate neutral landscape models \ud83c\udfd4",
+        "description": "API Client and Data Munging for the Demographic and Health Survey Data",
         "topics": [
+            "dataset",
+            "survey-data",
+            "dhs",
+            "extract",
+            "dhs-api",
+            "peer-reviewed",
             "r",
-            "spatial",
-            "landscape-ecology",
-            "neutral-landscape-model",
-            "rstats",
             "r-package",
-            "peer-reviewed",
+            "rstats",
+            "data-access"
+        ]
+    },
+    {
+        "uid": "github/ropensci/slopes",
+        "url": "https://github.com/ropensci/slopes",
+        "rel": "/software/repository/github/ropensci/slopes",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Package to calculate slopes of roads, rivers and trajectories",
+        "topics": [
             "geospatial"
         ]
     },
     {
-        "uid": "github/ropensci/getlandsat",
-        "url": "https://github.com/ropensci/getlandsat",
-        "rel": "/software/repository/github/ropensci/getlandsat",
+        "uid": "github/ropensci/rdryad",
+        "url": "https://github.com/ropensci/rdryad",
+        "rel": "/software/repository/github/ropensci/rdryad",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "get landsat 8 images and metadata",
+        "description": "R client for Dryad web services",
         "topics": [
-            "landsat",
+            "dryad-api",
+            "dryad",
             "data",
-            "rstats",
+            "doi",
+            "oai-pmh",
             "r",
+            "rstats",
             "r-package",
-            "peer-reviewed",
-            "aws",
-            "earth",
-            "image",
-            "imaging",
-            "nasa",
-            "usgs",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/ramlegacy",
-        "url": "https://github.com/ropensci/ramlegacy",
-        "rel": "/software/repository/github/ropensci/ramlegacy",
+        "uid": "github/ropensci/timefuzz",
+        "url": "https://github.com/ropensci/timefuzz",
+        "rel": "/software/repository/github/ropensci/timefuzz",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R :package: to download, cache and read in different versions of the RAM Legacy Stock Assessment Data Base, an online compilation of stock assessment results for commercially exploited marine populations from around the world.",
+        "description": "Time Travel to Test Time Dependent Code",
         "topics": [
             "r",
             "rstats",
+            "testing",
+            "tdd",
+            "time-dependent",
             "r-package",
-            "ropensci",
-            "ramlegacy",
-            "stock-assessment",
-            "marine-biology",
-            "fisheries",
-            "data-access"
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/elastic",
-        "url": "https://github.com/ropensci/elastic",
-        "rel": "/software/repository/github/ropensci/elastic",
+        "uid": "github/ropensci/rnaturalearth",
+        "url": "https://github.com/ropensci/rnaturalearth",
+        "rel": "/software/repository/github/ropensci/rnaturalearth",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R client for the Elasticsearch HTTP API",
+        "description": "an R package to hold and facilitate interaction with natural earth map data :earth_africa:",
         "topics": [
-            "elasticsearch",
-            "http",
-            "database",
-            "database-wrapper",
-            "json",
-            "rstats",
+            "peer-reviewed",
             "r",
             "r-package",
-            "data-science",
-            "etl",
-            "API",
-            "documents",
-            "Elasticsearch",
-            "HTTP",
-            "Java",
-            "JSON",
-            "NoSQL",
-            "search",
-            "databases"
+            "rstats",
+            "geospatial"
         ]
     },
     {
-        "uid": "github/ropensci/coder",
-        "url": "https://github.com/ropensci/coder",
-        "rel": "/software/repository/github/ropensci/coder",
-        "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
-        "description": "Classification of Cases into Deterministic Categories",
+        "uid": "github/ropensci/historydata",
+        "url": "https://github.com/ropensci/historydata",
+        "rel": "/software/repository/github/ropensci/historydata",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Datasets for Historians",
         "topics": [
             "r",
-            "package",
+            "rstats",
             "r-package",
-            "classification",
-            "icd-10",
-            "rstats"
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/chirps",
-        "url": "https://github.com/ropensci/chirps",
-        "rel": "/software/repository/github/ropensci/chirps",
-        "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
-        "description": "API Client for CHIRPS",
+        "uid": "github/ropensci/paleobioDB",
+        "url": "https://github.com/ropensci/paleobioDB",
+        "rel": "/software/repository/github/ropensci/paleobioDB",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "R interface to the Paleobiology Database",
         "topics": [
-            "climatology",
-            "precipitation-data",
+            "r",
             "rstats",
-            "chirps"
+            "r-package",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/geojsonlint",
-        "url": "https://github.com/ropensci/geojsonlint",
-        "rel": "/software/repository/github/ropensci/geojsonlint",
+        "uid": "github/ropensci/rnoaa",
+        "url": "https://github.com/ropensci/rnoaa",
+        "rel": "/software/repository/github/ropensci/rnoaa",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "GeoJSON linting for R (THIS IS NOT THE SRC FOR geojsonlint.com)",
+        "description": "R interface to many NOAA data APIs",
         "topics": [
-            "geojson",
-            "linter",
-            "r",
+            "noaa",
+            "climate",
             "rstats",
+            "noaa-data",
+            "r",
             "r-package",
-            "data",
-            "geospatial",
-            "hint",
-            "lint",
-            "schema",
-            "geospatial"
+            "buoy",
+            "earth",
+            "ISD",
+            "NCDC",
+            "NOAA",
+            "precipitation",
+            "science",
+            "seaice",
+            "storm",
+            "temperature",
+            "tornadoe",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/babette",
-        "url": "https://github.com/ropensci/babette",
-        "rel": "/software/repository/github/ropensci/babette",
+        "uid": "github/ropensci/vcr",
+        "url": "https://github.com/ropensci/vcr",
+        "rel": "/software/repository/github/ropensci/vcr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "babette is an R package to work with BEAST2",
+        "description": "Record HTTP calls and replay them",
         "topics": [
+            "unit-testing",
+            "testing",
+            "mocking",
+            "rstats",
+            "vcr",
             "r",
             "r-package",
-            "rstats",
-            "phylogenetics",
-            "beast2",
-            "bayesian-inference",
-            "scalereprod"
+            "API",
+            "curl",
+            "http",
+            "http-mocking",
+            "https",
+            "mock",
+            "tdd",
+            "testing-tools",
+            "web-services",
+            "http-tools"
         ]
     },
     {
-        "uid": "github/ropensci/cld2",
-        "url": "https://github.com/ropensci/cld2",
-        "rel": "/software/repository/github/ropensci/cld2",
+        "uid": "github/ropensci/infx",
+        "url": "https://github.com/ropensci/infx",
+        "rel": "/software/repository/github/ropensci/infx",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R Wrapper for Google's Compact Language Detector 2",
+        "description": "Access to InfectX/TargetInfectX screening data from R",
         "topics": [
-            "cld",
-            "cld2",
-            "language-detection",
-            "language-detector",
             "r",
-            "rstats",
             "r-package",
-            "literature"
+            "api-client",
+            "openbis",
+            "peer-reviewed",
+            "rstats",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/rdflib",
-        "url": "https://github.com/ropensci/rdflib",
-        "rel": "/software/repository/github/ropensci/rdflib",
+        "uid": "github/ropensci/pathviewr",
+        "url": "https://github.com/ropensci/pathviewr",
+        "rel": "/software/repository/github/ropensci/pathviewr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": ":package: High level wrapper around the redland package for common rdf applications ",
+        "description": "\ud83d\udc26 Tools to import, clean, and visualize animal movement data in R",
         "topics": [
-            "r",
+            "movement-data",
+            "motion",
+            "animal-movement",
+            "optitrack",
+            "flydra",
+            "visual-guidance",
+            "visual-perception",
             "rstats",
-            "r-package",
-            "peer-reviewed",
+            "rstats-package",
+            "trajectory-analysis",
+            "trajectories",
             "data-extraction"
         ]
     },
     {
-        "uid": "github/ropensci/cchecks",
-        "url": "https://github.com/ropensci/cchecks",
-        "rel": "/software/repository/github/ropensci/cchecks",
+        "uid": "github/ropensci/grainchanger",
+        "url": "https://github.com/ropensci/grainchanger",
+        "rel": "/software/repository/github/ropensci/grainchanger",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R client for the cranchecks.info API",
+        "description": "Data aggregation methods for raster data",
         "topics": [
-            "rstats",
-            "cran",
-            "r",
-            "testing",
-            "r-package",
-            "monitoring",
-            "scalereprod"
+            "geospatial"
         ]
     },
     {
-        "uid": "github/ropensci/rnaturalearthhires",
-        "url": "https://github.com/ropensci/rnaturalearthhires",
-        "rel": "/software/repository/github/ropensci/rnaturalearthhires",
+        "uid": "github/ropensci/tidync",
+        "url": "https://github.com/ropensci/tidync",
+        "rel": "/software/repository/github/ropensci/tidync",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "high resolution naturalearth data for rnaturalearth",
+        "description": "NetCDF exploration and data extraction",
         "topics": [
-            "r",
-            "r-package",
-            "rstats",
-            "data-access"
+            "geospatial"
         ]
     },
     {
-        "uid": "github/ropensci/cffr",
-        "url": "https://github.com/ropensci/cffr",
-        "rel": "/software/repository/github/ropensci/cffr",
+        "uid": "github/ropensci/spatsoc",
+        "url": "https://github.com/ropensci/spatsoc",
+        "rel": "/software/repository/github/ropensci/spatsoc",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Generate Citation File Format (cff) Metadata for R Packages",
+        "description": ":package: spatsoc is an R package for detecting spatial and temporal groups in GPS relocations. ",
         "topics": [
             "r",
+            "spatial",
+            "social",
+            "gps",
+            "animal",
+            "network",
             "r-package",
-            "attribution",
-            "citation-files",
-            "citation",
-            "citation-file-format"
+            "rstats",
+            "geospatial"
         ]
     },
     {
-        "uid": "github/ropensci/ots",
-        "url": "https://github.com/ropensci/ots",
-        "rel": "/software/repository/github/ropensci/ots",
+        "uid": "github/ropensci/onekp",
+        "url": "https://github.com/ropensci/onekp",
+        "rel": "/software/repository/github/ropensci/onekp",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "ocean time series datasets",
+        "description": "Access sequences from the 1000 Plant Initiative (1KP)",
         "topics": [
-            "ocean",
-            "data",
-            "scientific-data-types",
-            "time-series",
             "r",
             "rstats",
             "r-package",
@@ -19749,876 +19680,876 @@
         ]
     },
     {
-        "uid": "github/ropensci/handlr",
-        "url": "https://github.com/ropensci/handlr",
-        "rel": "/software/repository/github/ropensci/handlr",
+        "uid": "github/ropensci/plater",
+        "url": "https://github.com/ropensci/plater",
+        "rel": "/software/repository/github/ropensci/plater",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "convert among citation formats",
+        "description": "Tools to make it easy to work with microtiter plate-shaped data",
         "topics": [
-            "citations",
-            "doi",
-            "digital-object-identifier",
-            "metadata",
-            "bibtex",
-            "citeproc",
-            "crosscite",
-            "ris",
             "r",
-            "r-package",
             "rstats",
-            "citation",
-            "Citeproc",
-            "Codemeta",
-            "Crosscite",
-            "Crossref",
-            "JSON",
-            "RDF",
-            "RIS",
-            "XML",
-            "literature"
+            "r-package",
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/git2r",
-        "url": "https://github.com/ropensci/git2r",
-        "rel": "/software/repository/github/ropensci/git2r",
+        "uid": "github/ropensci/rfisheries",
+        "url": "https://github.com/ropensci/rfisheries",
+        "rel": "/software/repository/github/ropensci/rfisheries",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R bindings to the libgit2 library",
+        "description": "package for interacting with fisheries databases at openfisheries.org",
         "topics": [
-            "libgit2",
-            "libgit2-library",
-            "git",
-            "git-client",
+            "fisheries",
+            "open-data",
+            "openfisheries",
             "r",
             "rstats",
             "r-package",
-            "scalereprod"
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/smapr",
-        "url": "https://github.com/ropensci/smapr",
-        "rel": "/software/repository/github/ropensci/smapr",
+        "uid": "github/ropensci/namext",
+        "url": "https://github.com/ropensci/namext",
+        "rel": "/software/repository/github/ropensci/namext",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "An R package for acquisition and processing of NASA SMAP data",
+        "description": "extract scientific names from papers/articles/text using gnfinder (https://github.com/gnames/gnfinder)",
         "topics": [
-            "nasa",
-            "smap-data",
-            "raster",
-            "extract-data",
-            "acquisition",
-            "soil-moisture",
-            "soil-moisture-sensor",
-            "soil-mapping",
-            "peer-reviewed",
             "r",
-            "r-package",
             "rstats",
-            "data-access"
+            "taxonomy"
         ]
     },
     {
-        "uid": "github/ropensci/rnoaa",
-        "url": "https://github.com/ropensci/rnoaa",
-        "rel": "/software/repository/github/ropensci/rnoaa",
+        "uid": "github/ropensci/workloopR",
+        "url": "https://github.com/ropensci/workloopR",
+        "rel": "/software/repository/github/ropensci/workloopR",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R interface to many NOAA data APIs",
+        "description": "\ud83d\udcaa Analysis of work loops and other data from muscle physiology experiments",
         "topics": [
-            "noaa",
-            "climate",
-            "rstats",
-            "noaa-data",
+            "muscle-physiology-experiments",
+            "work-loop",
+            "muscle-force",
+            "tetanus",
+            "workloop",
+            "ddf",
             "r",
             "r-package",
-            "buoy",
-            "earth",
-            "ISD",
-            "NCDC",
-            "NOAA",
-            "precipitation",
-            "science",
-            "seaice",
-            "storm",
-            "temperature",
-            "tornadoe",
-            "data-access"
+            "rstats",
+            "data-extraction"
         ]
     },
     {
-        "uid": "github/ropensci/DoOR.functions",
-        "url": "https://github.com/ropensci/DoOR.functions",
-        "rel": "/software/repository/github/ropensci/DoOR.functions",
+        "uid": "github/ropensci/solrium",
+        "url": "https://github.com/ropensci/solrium",
+        "rel": "/software/repository/github/ropensci/solrium",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R package containing the functions used to build the Database of Odor Responses",
+        "description": "A general purpose R interface to Solr",
         "topics": [
-            "r",
+            "solr",
+            "solr-client",
+            "solr-search",
             "rstats",
+            "database",
+            "r",
             "r-package",
-            "peer-reviewed",
+            "API",
+            "JSON",
+            "search",
+            "web",
+            "XML",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/geojsonio",
-        "url": "https://github.com/ropensci/geojsonio",
-        "rel": "/software/repository/github/ropensci/geojsonio",
+        "uid": "github/ropensci/emld",
+        "url": "https://github.com/ropensci/emld",
+        "rel": "/software/repository/github/ropensci/emld",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Convert many data formats to & from GeoJSON & TopoJSON",
+        "description": ":package: JSON-LD representation of EML",
         "topics": [
-            "geojson",
-            "topojson",
-            "io",
-            "rstats",
-            "r",
-            "r-package",
-            "conversion",
-            "data",
-            "geospatial",
-            "input-output",
-            "geospatial"
+            "data-extraction"
         ]
     },
     {
-        "uid": "github/ropensci/weatherOz",
-        "url": "https://github.com/ropensci/weatherOz",
-        "rel": "/software/repository/github/ropensci/weatherOz",
+        "uid": "github/ropensci/rOPTRAM",
+        "url": "https://github.com/ropensci/rOPTRAM",
+        "rel": "/software/repository/github/ropensci/rOPTRAM",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "An API Client for Australian Weather and Climate Data Resources",
-        "topics": [
-            "australia",
-            "rstats",
-            "weather",
-            "climate",
-            "api-client",
-            "data",
-            "weather-api",
-            "weather-forecast",
-            "rainfall",
-            "r"
-        ]
+        "description": "Derive Soil Moisture Using the OPTRAM Algorithm",
+        "topics": []
     },
     {
-        "uid": "github/ropensci/visdat",
-        "url": "https://github.com/ropensci/visdat",
-        "rel": "/software/repository/github/ropensci/visdat",
+        "uid": "github/ropensci/jqr",
+        "url": "https://github.com/ropensci/jqr",
+        "rel": "/software/repository/github/ropensci/jqr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Preliminary Exploratory Visualisation of Data",
+        "description": "R interface to jq ",
         "topics": [
-            "missingness",
-            "visualisation",
+            "json",
+            "rstats",
+            "jq",
             "r",
-            "exploratory-data-analysis",
-            "ropensci",
             "r-package",
-            "rstats",
-            "peer-reviewed",
-            "data-visualization"
+            "data-extraction"
         ]
     },
     {
-        "uid": "github/ropensci/rb3",
-        "url": "https://github.com/ropensci/rb3",
-        "rel": "/software/repository/github/ropensci/rb3",
+        "uid": "github/ropensci/pdftools",
+        "url": "https://github.com/ropensci/pdftools",
+        "rel": "/software/repository/github/ropensci/pdftools",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "A bunch of downloaders and parsers for data delivered from B3",
+        "description": "Text Extraction, Rendering and Converting of PDF Documents",
         "topics": [
+            "pdf-format",
+            "text-extraction",
+            "poppler-library",
+            "poppler",
             "r",
-            "market-data",
-            "finance",
-            "financial-data",
-            "financial-services",
-            "exchange-data",
-            "brazil"
+            "rstats",
+            "pdf-files",
+            "pdftools",
+            "r-package",
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/addressable",
-        "url": "https://github.com/ropensci/addressable",
-        "rel": "/software/repository/github/ropensci/addressable",
+        "uid": "github/ropensci/jenkins",
+        "url": "https://github.com/ropensci/jenkins",
+        "rel": "/software/repository/github/ropensci/jenkins",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Email Address Validation",
+        "description": "Simple Jenkins client for R",
         "topics": [
-            "geospatial"
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/spiro",
-        "url": "https://github.com/ropensci/spiro",
-        "rel": "/software/repository/github/ropensci/spiro",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Work with data from cardiopulmonary exercise testing",
-        "topics": []
-    },
-    {
-        "uid": "github/ropensci/outsider.devtools",
-        "url": "https://github.com/ropensci/outsider.devtools",
-        "rel": "/software/repository/github/ropensci/outsider.devtools",
+        "uid": "github/ropensci/hunspell",
+        "url": "https://github.com/ropensci/hunspell",
+        "rel": "/software/repository/github/ropensci/hunspell",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Build your own modules for `outsider`",
+        "description": "High-Performance Stemmer, Tokenizer, and Spell Checker for R",
         "topics": [
+            "spellchecker",
+            "hunspell",
+            "stemmer",
+            "tokenizer",
+            "spell-check",
+            "r",
             "rstats",
-            "docker",
-            "scalereprod"
+            "r-package",
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/epubr",
-        "url": "https://github.com/ropensci/epubr",
-        "rel": "/software/repository/github/ropensci/epubr",
+        "uid": "github/ropensci/terrainr",
+        "url": "https://github.com/ropensci/terrainr",
+        "rel": "/software/repository/github/ropensci/terrainr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Read EPUB files in R",
+        "description": "Get DEMs and orthoimagery from the USGS National Map, georeference your images and merge rasters, and visualize with Unity 3D",
         "topics": [
-            "epub-files",
             "r",
-            "rstats",
             "r-package",
-            "epub",
-            "epub-format",
+            "cran",
+            "terrainr",
+            "rstats",
+            "usgs",
+            "map",
+            "mapping",
+            "national-map",
+            "unity-rendering-engine",
+            "unity",
+            "map-tiles",
+            "progressr",
             "peer-reviewed",
-            "data-access"
+            "retrieve-data",
+            "orthoimagery",
+            "dems",
+            "datasets",
+            "nhd"
         ]
     },
     {
-        "uid": "github/ropensci/tarchetypes",
-        "url": "https://github.com/ropensci/tarchetypes",
-        "rel": "/software/repository/github/ropensci/tarchetypes",
+        "uid": "github/ropensci/av",
+        "url": "https://github.com/ropensci/av",
+        "rel": "/software/repository/github/ropensci/av",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Archetypes for targets and pipelines",
+        "description": "Working with Video in R",
         "topics": [
-            "reproducibility",
-            "high-performance-computing",
             "r",
-            "data-science",
-            "rstats",
-            "pipeline",
             "r-package",
-            "workflow",
-            "targets",
-            "r-targetopia",
-            "peer-reviewed",
-            "scalereprod"
+            "rstats",
+            "image-processing"
         ]
     },
     {
-        "uid": "github/ropensci/rvertnet",
-        "url": "https://github.com/ropensci/rvertnet",
-        "rel": "/software/repository/github/ropensci/rvertnet",
+        "uid": "github/ropensci/ots",
+        "url": "https://github.com/ropensci/ots",
+        "rel": "/software/repository/github/ropensci/ots",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Wrapper to the VertNet API",
+        "description": "ocean time series datasets",
         "topics": [
-            "api-wrapper",
-            "biodiversity",
-            "specimen",
+            "ocean",
+            "data",
+            "scientific-data-types",
+            "time-series",
+            "r",
             "rstats",
-            "vertnet",
-            "r",
-            "spocc",
             "r-package",
-            "mammalia",
-            "mammals",
-            "maps",
-            "occurrences",
-            "species",
-            "specimens",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/cyphr",
-        "url": "https://github.com/ropensci/cyphr",
-        "rel": "/software/repository/github/ropensci/cyphr",
+        "uid": "github/ropensci/mctq",
+        "url": "https://github.com/ropensci/mctq",
+        "rel": "/software/repository/github/ropensci/mctq",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": ":shipit: Humane encryption",
+        "description": "\u2600 Tools to process the Munich ChronoType Questionnaire (MCTQ)",
         "topics": [
-            "encryption",
-            "sodium",
-            "openssl",
-            "r",
-            "rstats",
+            "chronobiology",
+            "mctq",
+            "sleep",
             "r-package",
             "peer-reviewed",
-            "security"
+            "r",
+            "rstats",
+            "data-extraction"
         ]
     },
     {
-        "uid": "github/ropensci/popler",
-        "url": "https://github.com/ropensci/popler",
-        "rel": "/software/repository/github/ropensci/popler",
+        "uid": "github/ropensci/rebird",
+        "url": "https://github.com/ropensci/rebird",
+        "rel": "/software/repository/github/ropensci/rebird",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "The R package to browse and query the popler database",
+        "description": "Wrapper to the eBird API",
         "topics": [
+            "ebird",
+            "rstats",
+            "birds",
+            "ebird-api",
+            "r",
+            "ebird-webservices",
+            "spocc",
+            "r-package",
+            "biology",
+            "birding",
+            "data",
+            "database",
+            "observations",
+            "ornithology",
+            "sightings",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/hddtools",
-        "url": "https://github.com/ropensci/hddtools",
-        "rel": "/software/repository/github/ropensci/hddtools",
+        "uid": "github/ropensci/chromer",
+        "url": "https://github.com/ropensci/chromer",
+        "rel": "/software/repository/github/ropensci/chromer",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Hydrological Data Discovery Tools (R package for hydrology and open data)",
+        "description": "package for interacting with the chromosome counts database (CCDB) at http://ccdb.tau.ac.il",
         "topics": [
             "r",
             "rstats",
             "r-package",
-            "hydrology",
-            "sepa",
-            "precipitation",
-            "mopex",
-            "data60uk",
-            "grdc",
-            "kgclimateclass",
-            "peer-reviewed",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/pubchunks",
-        "url": "https://github.com/ropensci/pubchunks",
-        "rel": "/software/repository/github/ropensci/pubchunks",
+        "uid": "github/ropensci/rusda",
+        "url": "https://github.com/ropensci/rusda",
+        "rel": "/software/repository/github/ropensci/rusda",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Get chunks of XML format scholarly articles",
+        "description": "Interface to USDA Databases",
         "topics": [
-            "text-mining",
-            "literature",
-            "open-access",
-            "xml",
-            "rstats",
             "r",
+            "rstats",
             "r-package",
-            "citations",
-            "full-text",
-            "pdf",
-            "publications",
-            "TDM",
-            "text-ming"
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/stplanr",
-        "url": "https://github.com/ropensci/stplanr",
-        "rel": "/software/repository/github/ropensci/stplanr",
+        "uid": "github/ropensci/geojsonlint",
+        "url": "https://github.com/ropensci/geojsonlint",
+        "rel": "/software/repository/github/ropensci/geojsonlint",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Sustainable transport planning with R",
+        "description": "GeoJSON linting for R (THIS IS NOT THE SRC FOR geojsonlint.com)",
         "topics": [
+            "geojson",
+            "linter",
             "r",
-            "transport",
-            "spatial",
             "rstats",
             "r-package",
-            "peer-reviewed",
-            "transport-planning",
-            "walking",
-            "cycling",
-            "pubic-transport",
-            "origin-destination",
-            "desire-lines",
-            "routes",
-            "routing",
-            "route-network",
-            "transportation",
-            "cycle",
-            "data-access"
+            "data",
+            "geospatial",
+            "hint",
+            "lint",
+            "schema",
+            "geospatial"
         ]
     },
     {
-        "uid": "github/ropensci/excluder",
-        "url": "https://github.com/ropensci/excluder",
-        "rel": "/software/repository/github/ropensci/excluder",
+        "uid": "github/ropensci/rrlite",
+        "url": "https://github.com/ropensci/rrlite",
+        "rel": "/software/repository/github/ropensci/rrlite",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Checks for Exclusion Criteria in Online Data",
+        "description": "R interface to rlite https://github.com/seppo0010/rlite",
         "topics": [
-            "qualtrics",
-            "mturk",
-            "datacleaning",
-            "exclusion",
             "r",
             "rstats",
             "r-package",
-            "data-extraction"
+            "peer-reviewed",
+            "databases"
         ]
     },
     {
-        "uid": "github/ropensci/tacmagic",
-        "url": "https://github.com/ropensci/tacmagic",
-        "rel": "/software/repository/github/ropensci/tacmagic",
+        "uid": "github/ropensci/bowerbird",
+        "url": "https://github.com/ropensci/bowerbird",
+        "rel": "/software/repository/github/ropensci/bowerbird",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "tacmagic: PET Analysis in R",
+        "description": "Keep a collection of sparkly data resources",
         "topics": [
-            "positron-emission-tomography",
-            "pet",
-            "pet-mr",
-            "neuroimaging",
             "r",
-            "statistics",
-            "positron",
-            "mri",
-            "neuroscience",
-            "neuroscience-methods",
-            "data-extraction"
+            "rstats",
+            "r-package",
+            "peer-reviewed",
+            "Antarctic",
+            "climate",
+            "data",
+            "environmental",
+            "ropensci",
+            "satellite",
+            "SouthernOcean",
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/nomisr",
-        "url": "https://github.com/ropensci/nomisr",
-        "rel": "/software/repository/github/ropensci/nomisr",
+        "uid": "github/ropensci/PostcodesioR",
+        "url": "https://github.com/ropensci/PostcodesioR",
+        "rel": "/software/repository/github/ropensci/PostcodesioR",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Access UK official statistics from the Nomis database through R.",
+        "description": "API wrapper around postcodes.io - free UK postcode lookup and geocoder",
         "topics": [
             "r",
-            "geographic-data",
-            "census-data",
+            "api-wrapper",
+            "geocoder",
+            "postcode",
             "uk",
-            "demography",
-            "api-client",
+            "geographic-data",
             "rstats",
-            "officialstatistics",
-            "official-statistics",
-            "national-statistics",
             "r-package",
             "peer-reviewed",
-            "data-access"
+            "geospatial"
         ]
     },
     {
-        "uid": "github/ropensci/terrainr",
-        "url": "https://github.com/ropensci/terrainr",
-        "rel": "/software/repository/github/ropensci/terrainr",
+        "uid": "github/ropensci/RefManageR",
+        "url": "https://github.com/ropensci/RefManageR",
+        "rel": "/software/repository/github/ropensci/RefManageR",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Get DEMs and orthoimagery from the USGS National Map, georeference your images and merge rasters, and visualize with Unity 3D",
+        "description": "R package RefManageR",
         "topics": [
             "r",
-            "r-package",
-            "cran",
-            "terrainr",
             "rstats",
-            "usgs",
-            "map",
-            "mapping",
-            "national-map",
-            "unity-rendering-engine",
-            "unity",
-            "map-tiles",
-            "progressr",
+            "r-package",
             "peer-reviewed",
-            "retrieve-data",
-            "orthoimagery",
-            "dems",
-            "datasets",
-            "nhd"
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/ezknitr",
-        "url": "https://github.com/ropensci/ezknitr",
-        "rel": "/software/repository/github/ropensci/ezknitr",
+        "uid": "github/ropensci/RNeXML",
+        "url": "https://github.com/ropensci/RNeXML",
+        "rel": "/software/repository/github/ropensci/RNeXML",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Avoid the typical working directory pain when using 'knitr'",
+        "description": "Implementing semantically rich NeXML I/O in R",
         "topics": [
-            "rmarkdown",
-            "knitr",
-            "rmd",
-            "reproducibility",
             "r",
             "rstats",
+            "nexml",
+            "phylogenetics",
             "r-package",
-            "peer-reviewed",
-            "scalereprod"
+            "linked-data",
+            "metadata",
+            "data-publication"
         ]
     },
     {
-        "uid": "github/ropensci/geonames",
-        "url": "https://github.com/ropensci/geonames",
-        "rel": "/software/repository/github/ropensci/geonames",
+        "uid": "github/ropensci/rvertnet",
+        "url": "https://github.com/ropensci/rvertnet",
+        "rel": "/software/repository/github/ropensci/rvertnet",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R package for accessing the geonames.org API",
+        "description": "Wrapper to the VertNet API",
+        "topics": [
+            "api-wrapper",
+            "biodiversity",
+            "specimen",
+            "rstats",
+            "vertnet",
+            "r",
+            "spocc",
+            "r-package",
+            "mammalia",
+            "mammals",
+            "maps",
+            "occurrences",
+            "species",
+            "specimens",
+            "data-access"
+        ]
+    },
+    {
+        "uid": "github/ropensci/ramlegacy",
+        "url": "https://github.com/ropensci/ramlegacy",
+        "rel": "/software/repository/github/ropensci/ramlegacy",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "R :package: to download, cache and read in different versions of the RAM Legacy Stock Assessment Data Base, an online compilation of stock assessment results for commercially exploited marine populations from around the world.",
         "topics": [
             "r",
             "rstats",
             "r-package",
-            "geospatial"
+            "ropensci",
+            "ramlegacy",
+            "stock-assessment",
+            "marine-biology",
+            "fisheries",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/tidync",
-        "url": "https://github.com/ropensci/tidync",
-        "rel": "/software/repository/github/ropensci/tidync",
+        "uid": "github/ropensci/ssh",
+        "url": "https://github.com/ropensci/ssh",
+        "rel": "/software/repository/github/ropensci/ssh",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "NetCDF exploration and data extraction",
+        "description": "Native SSH client in R based on libssh",
         "topics": [
-            "geospatial"
+            "libssh",
+            "ssh",
+            "ssh-client",
+            "r",
+            "rstats",
+            "r-package",
+            "security"
         ]
     },
     {
-        "uid": "github/ropensci/historydata",
-        "url": "https://github.com/ropensci/historydata",
-        "rel": "/software/repository/github/ropensci/historydata",
+        "uid": "github/ropensci/jsonvalidate",
+        "url": "https://github.com/ropensci/jsonvalidate",
+        "rel": "/software/repository/github/ropensci/jsonvalidate",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Datasets for Historians",
+        "description": ":heavy_check_mark::interrobang: Validate JSON",
         "topics": [
             "r",
             "rstats",
+            "jsonvalidate",
+            "json",
+            "json-validation",
             "r-package",
+            "scalereprod"
+        ]
+    },
+    {
+        "uid": "github/ropensci/bibtex",
+        "url": "https://github.com/ropensci/bibtex",
+        "rel": "/software/repository/github/ropensci/bibtex",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "bibtex parser for R",
+        "topics": [
+            "bibtex",
+            "parser",
+            "r",
+            "literature"
+        ]
+    },
+    {
+        "uid": "github/ropensci/c14bazAAR",
+        "url": "https://github.com/ropensci/c14bazAAR",
+        "rel": "/software/repository/github/ropensci/c14bazAAR",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "R Package - Download and Prepare C14 Dates from Different Source Databases",
+        "topics": [
+            "radiocarbon-dates",
+            "archaeology",
+            "r",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/nodbi",
-        "url": "https://github.com/ropensci/nodbi",
-        "rel": "/software/repository/github/ropensci/nodbi",
+        "uid": "github/ropensci/lingtypology",
+        "url": "https://github.com/ropensci/lingtypology",
+        "rel": "/software/repository/github/ropensci/lingtypology",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Document DBI connector for R",
+        "description": "R package for linguistic cartography and typological databases search",
         "topics": [
-            "rstats",
-            "database",
-            "nosql",
-            "couchdb",
-            "mongodb",
-            "elasticsearch",
+            "clld",
+            "linguistics",
+            "typology",
+            "linguistic-maps",
+            "autotype",
+            "wals",
+            "phoible",
+            "glottolog-database",
+            "afbo",
+            "sails",
+            "abvd",
+            "atlas",
             "r",
             "r-package",
-            "sqlite",
-            "CouchDB",
-            "documents",
-            "Elasticsearch",
-            "JSON",
-            "MongoDB",
-            "NoSQL",
-            "PostgreSQL",
-            "SQLite",
-            "databases"
+            "bivaltyp",
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/rcrossref",
-        "url": "https://github.com/ropensci/rcrossref",
-        "rel": "/software/repository/github/ropensci/rcrossref",
+        "uid": "github/ropensci/rcoreoa",
+        "url": "https://github.com/ropensci/rcoreoa",
+        "rel": "/software/repository/github/ropensci/rcoreoa",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R client for various CrossRef APIs",
+        "description": "CORE API R Client",
         "topics": [
-            "crossref-api",
-            "doi",
-            "metadata",
-            "api",
+            "api-wrapper",
+            "scholarly-metadata",
             "r",
             "rstats",
-            "api-wrapper",
             "r-package",
             "citations",
-            "Crossref",
             "full-text",
             "literature",
+            "metadata",
             "pdf",
             "publications",
-            "TDM",
             "text-ming",
-            "xml",
-            "literature"
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/rfisheries",
-        "url": "https://github.com/ropensci/rfisheries",
-        "rel": "/software/repository/github/ropensci/rfisheries",
+        "uid": "github/ropensci/citesdb",
+        "url": "https://github.com/ropensci/citesdb",
+        "rel": "/software/repository/github/ropensci/citesdb",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "package for interacting with fisheries databases at openfisheries.org",
+        "description": "A high-performance database of shipment-level CITES trade data",
         "topics": [
-            "fisheries",
-            "open-data",
-            "openfisheries",
             "r",
             "rstats",
             "r-package",
+            "wildlife",
+            "dataset",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/taxize",
-        "url": "https://github.com/ropensci/taxize",
-        "rel": "/software/repository/github/ropensci/taxize",
+        "uid": "github/ropensci/refsplitr",
+        "url": "https://github.com/ropensci/refsplitr",
+        "rel": "/software/repository/github/ropensci/refsplitr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "A taxonomic toolbelt for R",
+        "description": "R package for processing, organizing, and visualizing reference records downloaded from the Web of Science. ",
         "topics": [
-            "taxonomy",
-            "data",
-            "api",
-            "biodiversity",
-            "biology",
-            "rstats",
-            "nomenclature",
-            "darwincore",
-            "taxize",
-            "api-wrapper",
-            "r",
-            "r-package",
-            "API",
-            "api-client",
-            "identifiers",
-            "JSON",
-            "names",
-            "species",
-            "web"
+            "bibliometrics",
+            "coauthorship",
+            "collaboration",
+            "georeferencing",
+            "metascience",
+            "namedisambiguation",
+            "references",
+            "scienceofscience",
+            "scientometrics",
+            "WebofScience",
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/PostcodesioR",
-        "url": "https://github.com/ropensci/PostcodesioR",
-        "rel": "/software/repository/github/ropensci/PostcodesioR",
+        "uid": "github/ropensci/FedData",
+        "url": "https://github.com/ropensci/FedData",
+        "rel": "/software/repository/github/ropensci/FedData",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "API wrapper around postcodes.io - free UK postcode lookup and geocoder",
+        "description": "Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources",
         "topics": [
             "r",
-            "api-wrapper",
-            "geocoder",
-            "postcode",
-            "uk",
-            "geographic-data",
             "rstats",
             "r-package",
             "peer-reviewed",
-            "geospatial"
-        ]
-    },
-    {
-        "uid": "github/ropensci/taxlist",
-        "url": "https://github.com/ropensci/taxlist",
-        "rel": "/software/repository/github/ropensci/taxlist",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Handling taxonomic lists",
-        "topics": [
-            "taxonomy"
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/plotly",
-        "url": "https://github.com/ropensci/plotly",
-        "rel": "/software/repository/github/ropensci/plotly",
+        "uid": "github/ropensci/rtweet",
+        "url": "https://github.com/ropensci/rtweet",
+        "rel": "/software/repository/github/ropensci/rtweet",
         "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
-        "description": "An interactive graphing library for R",
+        "description": "\ud83d\udc26 R client for interacting with Twitter's [stream and REST] APIs",
         "topics": [
+            "rtweet",
+            "r-rtweet",
+            "r-twitter",
+            "twitter",
+            "twitter-api",
+            "stream-api",
+            "rest-api",
+            "cran",
+            "tweets",
+            "r-package",
             "r",
-            "ggplot2",
-            "javascript",
-            "data-visualization",
-            "d3js",
-            "shiny",
-            "plotly",
-            "webgl",
-            "rstats",
-            "r-package"
+            "mkearney-r-package"
         ]
     },
     {
-        "uid": "github/ropensci/restez",
-        "url": "https://github.com/ropensci/restez",
-        "rel": "/software/repository/github/ropensci/restez",
+        "uid": "github/ropensci/graphql",
+        "url": "https://github.com/ropensci/graphql",
+        "rel": "/software/repository/github/ropensci/graphql",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": ":sleeping: :open_file_folder: Create and Query a Local Copy of GenBank in R",
+        "description": "Bindings to libgraphqlparser for R",
         "topics": [
-            "genbank",
-            "dna",
-            "sequence",
-            "entrez",
+            "graphql",
+            "libgraphql",
             "r",
-            "r-package",
             "rstats",
-            "data-extraction"
+            "r-package",
+            "http-tools"
         ]
     },
     {
-        "uid": "github/ropensci/qpdf",
-        "url": "https://github.com/ropensci/qpdf",
-        "rel": "/software/repository/github/ropensci/qpdf",
+        "uid": "github/ropensci/charlatan",
+        "url": "https://github.com/ropensci/charlatan",
+        "rel": "/software/repository/github/ropensci/charlatan",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Split, Combine and Compress PDF files",
+        "description": "Create fake data in R",
         "topics": [
-            "r",
-            "r-package",
+            "data",
+            "faker",
             "rstats",
-            "literature"
+            "dataset",
+            "fake-data",
+            "r",
+            "r-package",
+            "peer-reviewed",
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/rnassqs",
-        "url": "https://github.com/ropensci/rnassqs",
-        "rel": "/software/repository/github/ropensci/rnassqs",
+        "uid": "github/ropensci/addressable",
+        "url": "https://github.com/ropensci/addressable",
+        "rel": "/software/repository/github/ropensci/addressable",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R interface for the USDA National Agricultural Statistical Service's (NASS) 'Quick Stats' API (https://quickstats.nass.usda.gov/api)",
+        "description": "Email Address Validation",
         "topics": [
-            "data-access"
+            "geospatial"
         ]
     },
     {
-        "uid": "github/ropensci/tracerer",
-        "url": "https://github.com/ropensci/tracerer",
-        "rel": "/software/repository/github/ropensci/tracerer",
+        "uid": "github/ropensci/oai",
+        "url": "https://github.com/ropensci/oai",
+        "rel": "/software/repository/github/ropensci/oai",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "tracerer, 'Tracer for R', is an R package to work with the output of BEAST2",
+        "description": "OAI-PMH R client",
         "topics": [
+            "oai-pmh",
+            "rstats",
+            "data-access",
+            "scholarly-api",
             "r",
             "r-package",
-            "rstats",
-            "scalereprod"
+            "peer-reviewed",
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/treedata.table",
-        "url": "https://github.com/ropensci/treedata.table",
-        "rel": "/software/repository/github/ropensci/treedata.table",
+        "uid": "github/ropensci/ecoengine",
+        "url": "https://github.com/ropensci/ecoengine",
+        "rel": "/software/repository/github/ropensci/ecoengine",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "A wrapper for data.table that enables fast manipulation of  phylogenetic trees matched to data.",
+        "description": "Programmatic interface to the Berkeley Ecoinformatics Engine ",
         "topics": [
-            "data-extraction"
+            "r",
+            "rstats",
+            "ecoengine",
+            "berkeley-ecoinformatics-engine",
+            "spocc",
+            "r-package",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/predictNMB",
-        "url": "https://github.com/ropensci/predictNMB",
-        "rel": "/software/repository/github/ropensci/predictNMB",
+        "uid": "github/ropensci/pangaear",
+        "url": "https://github.com/ropensci/pangaear",
+        "rel": "/software/repository/github/ropensci/pangaear",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": null,
-        "topics": []
+        "description": "R client for the Pangaea database",
+        "topics": [
+            "paleobiology",
+            "scientific",
+            "data",
+            "rstats",
+            "r",
+            "r-package",
+            "api-client",
+            "webservice-client",
+            "archive",
+            "atmosphere",
+            "chemistry",
+            "earthscience",
+            "ecology",
+            "environmentalscience",
+            "paleontology",
+            "Pangaea",
+            "data-access"
+        ]
     },
     {
-        "uid": "github/ropensci/antiword",
-        "url": "https://github.com/ropensci/antiword",
-        "rel": "/software/repository/github/ropensci/antiword",
+        "uid": "github/ropensci/rotl",
+        "url": "https://github.com/ropensci/rotl",
+        "rel": "/software/repository/github/ropensci/rotl",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R wrapper for antiword utility",
+        "description": "Interface to Open Tree of Life API",
         "topics": [
-            "antiword",
-            "extract-text",
             "r",
             "rstats",
             "r-package",
-            "literature"
+            "taxonomy",
+            "phylogeny",
+            "peer-reviewed",
+            "biodiversity",
+            "independant-contrasts",
+            "metadata",
+            "phylogenetics",
+            "ropensci",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/rWBclimate",
-        "url": "https://github.com/ropensci/rWBclimate",
-        "rel": "/software/repository/github/ropensci/rWBclimate",
+        "uid": "github/ropensci/rromeo",
+        "url": "https://github.com/ropensci/rromeo",
+        "rel": "/software/repository/github/ropensci/rromeo",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R interface for the World Bank climate data",
+        "description": ":package: An R client for SHERPA/RoMEO API",
         "topics": [
             "r",
-            "rstats",
             "r-package",
-            "data-access"
+            "rstats",
+            "sherpa-romeo",
+            "api-client",
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/rebird",
-        "url": "https://github.com/ropensci/rebird",
-        "rel": "/software/repository/github/ropensci/rebird",
+        "uid": "github/ropensci/rcol",
+        "url": "https://github.com/ropensci/rcol",
+        "rel": "/software/repository/github/ropensci/rcol",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Wrapper to the eBird API",
+        "description": "client for Catalogue of Life REST API",
         "topics": [
-            "ebird",
+            "taxonomy",
+            "api-client",
             "rstats",
-            "birds",
-            "ebird-api",
             "r",
-            "ebird-webservices",
-            "spocc",
-            "r-package",
+            "API",
             "biology",
-            "birding",
-            "data",
-            "database",
-            "observations",
-            "ornithology",
-            "sightings",
+            "science",
+            "species",
+            "web",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/jagstargets",
-        "url": "https://github.com/ropensci/jagstargets",
-        "rel": "/software/repository/github/ropensci/jagstargets",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Reproducible Bayesian data analysis pipelines with targets and JAGS",
+        "uid": "github/ropensci/SymbiotaR2",
+        "url": "https://github.com/ropensci/SymbiotaR2",
+        "rel": "/software/repository/github/ropensci/SymbiotaR2",
+        "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
+        "description": "SymbiotaR2: an R package for accessing and downloading from Symbiota2 portals",
         "topics": [
+            "symbiota2-portal",
+            "database",
+            "library",
             "r",
-            "rstats",
-            "reproducibility",
-            "high-performance-computing",
-            "bayesian",
-            "jags",
-            "rjags",
-            "statistics",
-            "targets",
-            "make",
-            "rstats-package",
-            "r-targetopia"
+            "symbiota",
+            "specimen-records",
+            "symbiota2"
         ]
     },
     {
-        "uid": "github/ropensci/nasapower",
-        "url": "https://github.com/ropensci/nasapower",
-        "rel": "/software/repository/github/ropensci/nasapower",
+        "uid": "github/ropensci/webchem",
+        "url": "https://github.com/ropensci/webchem",
+        "rel": "/software/repository/github/ropensci/webchem",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "API Client for NASA POWER Global Meteorology, Surface Solar Energy and Climatology in R",
+        "description": "Chemical Information from the Web",
         "topics": [
-            "agroclimatology",
-            "weather",
-            "r",
-            "nasa-power",
-            "nasa",
-            "agroclimatology-data",
-            "weather-variables",
-            "weather-data",
-            "earth-science",
             "rstats",
-            "data-access",
+            "ropensci",
+            "chemical-information",
+            "webscraping",
+            "cas-number",
+            "chemspider",
+            "identifier",
+            "r",
             "r-package",
-            "climate-data",
-            "global",
-            "meteorological-data",
-            "meteorology",
-            "NASA",
-            "NASA-POWER"
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/rentrez",
-        "url": "https://github.com/ropensci/rentrez",
-        "rel": "/software/repository/github/ropensci/rentrez",
-        "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
-        "description": "talk with NCBI entrez using R",
+        "uid": "github/ropensci/daiquiri",
+        "url": "https://github.com/ropensci/daiquiri",
+        "rel": "/software/repository/github/ropensci/daiquiri",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Data quality reporting for temporal datasets.",
         "topics": [
+            "data-quality",
+            "initial-data-analysis",
             "r",
+            "r-package",
+            "reproducible-research",
             "rstats",
-            "r-package"
+            "temporal-data",
+            "time-series"
         ]
     },
     {
-        "uid": "github/ropensci/graphql",
-        "url": "https://github.com/ropensci/graphql",
-        "rel": "/software/repository/github/ropensci/graphql",
+        "uid": "github/ropensci/fingertipsR",
+        "url": "https://github.com/ropensci/fingertipsR",
+        "rel": "/software/repository/github/ropensci/fingertipsR",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Bindings to libgraphqlparser for R",
+        "description": "R package to interact with Public Health England\u2019s Fingertips data tool",
         "topics": [
-            "graphql",
-            "libgraphql",
+            "public-health-england",
+            "fingertips",
+            "health",
+            "open-data",
+            "public-health",
+            "cran",
+            "api-wrapper",
             "r",
             "rstats",
             "r-package",
-            "http-tools"
+            "peer-reviewed",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/stantargets",
-        "url": "https://github.com/ropensci/stantargets",
-        "rel": "/software/repository/github/ropensci/stantargets",
+        "uid": "github/ropensci/nlrx",
+        "url": "https://github.com/ropensci/nlrx",
+        "rel": "/software/repository/github/ropensci/nlrx",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Reproducible Bayesian data analysis pipelines with targets and cmdstanr",
+        "description": "nlrx NetLogo R",
+        "topics": [
+            "peer-reviewed",
+            "netlogo",
+            "individual-based-modelling",
+            "agent-based-modeling",
+            "r",
+            "r-package",
+            "rstats",
+            "scalereprod"
+        ]
+    },
+    {
+        "uid": "github/ropensci/jagstargets",
+        "url": "https://github.com/ropensci/jagstargets",
+        "rel": "/software/repository/github/ropensci/jagstargets",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Reproducible Bayesian data analysis pipelines with targets and JAGS",
         "topics": [
             "r",
             "rstats",
             "reproducibility",
             "high-performance-computing",
-            "stan",
             "bayesian",
+            "jags",
+            "rjags",
             "statistics",
             "targets",
             "make",
@@ -20627,119 +20558,117 @@
         ]
     },
     {
-        "uid": "github/ropensci/RefManageR",
-        "url": "https://github.com/ropensci/RefManageR",
-        "rel": "/software/repository/github/ropensci/RefManageR",
+        "uid": "github/ropensci/qpdf",
+        "url": "https://github.com/ropensci/qpdf",
+        "rel": "/software/repository/github/ropensci/qpdf",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R package RefManageR",
+        "description": "Split, Combine and Compress PDF files",
         "topics": [
             "r",
-            "rstats",
             "r-package",
-            "peer-reviewed",
-            "scalereprod"
+            "rstats",
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/censo2017",
-        "url": "https://github.com/ropensci/censo2017",
-        "rel": "/software/repository/github/ropensci/censo2017",
+        "uid": "github/ropensci/prism",
+        "url": "https://github.com/ropensci/prism",
+        "rel": "/software/repository/github/ropensci/prism",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Una Base de Datos de Alto Rendimiento del Censo 2017 de Chile.",
+        "description": "Download data from the Oregon PRISM climate data project http://www.prism.oregonstate.edu/",
         "topics": [
-            "chile",
-            "censo",
-            "census",
-            "demografia",
-            "demographics",
+            "r",
             "rstats",
-            "redatam",
-            "duckdb",
+            "r-package",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/outsider.base",
-        "url": "https://github.com/ropensci/outsider.base",
-        "rel": "/software/repository/github/ropensci/outsider.base",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Base package for `outsider`",
-        "topics": [
-            "scalereprod"
-        ]
-    },
-    {
-        "uid": "github/ropensci/baRcodeR",
-        "url": "https://github.com/ropensci/baRcodeR",
-        "rel": "/software/repository/github/ropensci/baRcodeR",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Labeling, tracking, and organizing samples with 2D barcodes",
-        "topics": [
-            "scalereprod"
-        ]
-    },
-    {
-        "uid": "github/ropensci/scrubr",
-        "url": "https://github.com/ropensci/scrubr",
-        "rel": "/software/repository/github/ropensci/scrubr",
+        "uid": "github/ropensci/rplos",
+        "url": "https://github.com/ropensci/rplos",
+        "rel": "/software/repository/github/ropensci/rplos",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Clean species occurrence records",
+        "description": "R client for the PLoS Journals API",
         "topics": [
-            "biodiversity",
-            "data-cleaning",
-            "gbif",
-            "rstats",
+            "text-mining",
+            "xml",
+            "pdf",
+            "metadata",
+            "web-api",
+            "plos",
             "r",
-            "spocc",
+            "rstats",
             "r-package",
-            "data",
-            "occurrences",
-            "specimens",
-            "data-extraction"
+            "API",
+            "api-client",
+            "article",
+            "fulltext",
+            "JSON",
+            "library",
+            "PLOS",
+            "science",
+            "web",
+            "XML",
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/binman",
-        "url": "https://github.com/ropensci/binman",
-        "rel": "/software/repository/github/ropensci/binman",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "A Binary Download Manager",
+        "uid": "github/ropensci/targets",
+        "url": "https://github.com/ropensci/targets",
+        "rel": "/software/repository/github/ropensci/targets",
+        "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
+        "description": "Function-oriented Make-like declarative workflows for R",
         "topics": [
+            "reproducibility",
+            "high-performance-computing",
             "r",
-            "r-package",
+            "data-science",
+            "pipeline",
             "rstats",
-            "http-tools"
+            "r-package",
+            "workflow",
+            "targets",
+            "reproducible-research",
+            "make",
+            "r-targetopia",
+            "peer-reviewed"
         ]
     },
     {
-        "uid": "github/ropensci/opencv",
-        "url": "https://github.com/ropensci/opencv",
-        "rel": "/software/repository/github/ropensci/opencv",
+        "uid": "github/ropensci/rnassqs",
+        "url": "https://github.com/ropensci/rnassqs",
+        "rel": "/software/repository/github/ropensci/rnassqs",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R bindings for OpenCV",
+        "description": "R interface for the USDA National Agricultural Statistical Service's (NASS) 'Quick Stats' API (https://quickstats.nass.usda.gov/api)",
         "topics": [
-            "unconf18",
-            "opencv",
-            "opencv-library",
-            "r",
-            "r-package",
-            "rstats",
-            "unconf",
-            "image-processing"
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/DoOR.data",
-        "url": "https://github.com/ropensci/DoOR.data",
-        "rel": "/software/repository/github/ropensci/DoOR.data",
+        "uid": "github/ropensci/nasapower",
+        "url": "https://github.com/ropensci/nasapower",
+        "rel": "/software/repository/github/ropensci/nasapower",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R package containing the data for the Database of Odor Responses",
+        "description": "API Client for NASA POWER Global Meteorology, Surface Solar Energy and Climatology in R",
         "topics": [
+            "agroclimatology",
+            "weather",
             "r",
+            "nasa-power",
+            "nasa",
+            "agroclimatology-data",
+            "weather-variables",
+            "weather-data",
+            "earth-science",
             "rstats",
+            "data-access",
             "r-package",
-            "peer-reviewed",
-            "data-access"
+            "climate-data",
+            "global",
+            "meteorological-data",
+            "meteorology",
+            "NASA",
+            "NASA-POWER"
         ]
     },
     {
@@ -20761,199 +20690,286 @@
         ]
     },
     {
-        "uid": "github/ropensci/ssh",
-        "url": "https://github.com/ropensci/ssh",
-        "rel": "/software/repository/github/ropensci/ssh",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Native SSH client in R based on libssh",
-        "topics": [
-            "libssh",
-            "ssh",
-            "ssh-client",
-            "r",
-            "rstats",
-            "r-package",
-            "security"
-        ]
-    },
-    {
-        "uid": "github/ropensci/zbank",
-        "url": "https://github.com/ropensci/zbank",
-        "rel": "/software/repository/github/ropensci/zbank",
+        "uid": "github/ropensci/ritis",
+        "url": "https://github.com/ropensci/ritis",
+        "rel": "/software/repository/github/ropensci/ritis",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "ZooBank R client",
+        "description": "Integrated Taxonomic Information Service (ITIS) R client",
         "topics": [
-            "rstats",
+            "api-wrapper",
+            "itis",
             "taxonomy",
-            "zoology",
-            "identifiers",
-            "zoobank",
+            "rstats",
             "r",
             "r-package",
+            "taxize",
             "API",
             "api-client",
             "biology",
+            "identifiers",
             "JSON",
             "names",
             "nomenclature",
             "species",
-            "web",
-            "ZooBank",
-            "Zoological"
+            "web"
         ]
     },
     {
-        "uid": "github/ropensci/jsonvalidate",
-        "url": "https://github.com/ropensci/jsonvalidate",
-        "rel": "/software/repository/github/ropensci/jsonvalidate",
+        "uid": "github/ropensci/rperseus",
+        "url": "https://github.com/ropensci/rperseus",
+        "rel": "/software/repository/github/ropensci/rperseus",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": ":heavy_check_mark::interrobang: Validate JSON",
+        "description": "Get texts from the Perseus Digital Library :hocho: :snake: :snake: :snake:",
         "topics": [
+            "greek-bible",
+            "greek-new-testament",
+            "latin",
+            "classics",
+            "greek",
+            "perseus",
+            "perseus-digital-library",
+            "translation",
             "r",
             "rstats",
-            "jsonvalidate",
-            "json",
-            "json-validation",
             "r-package",
-            "scalereprod"
+            "peer-reviewed",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/tabulizer",
-        "url": "https://github.com/ropensci/tabulizer",
-        "rel": "/software/repository/github/ropensci/tabulizer",
+        "uid": "github/ropensci/microdemic",
+        "url": "https://github.com/ropensci/microdemic",
+        "rel": "/software/repository/github/ropensci/microdemic",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Bindings for Tabula PDF Table Extractor Library",
+        "description": "microsoft academic client",
         "topics": [
-            "tabula",
-            "tabular-data",
-            "pdf",
-            "java",
-            "pdf-document",
+            "api-client",
+            "scholarly-articles",
+            "scholarly-metadata",
+            "rstats",
             "r",
             "r-package",
-            "ropensci",
-            "rstats",
-            "peer-reviewed",
+            "text-mining",
+            "citations",
+            "full-text",
+            "literature",
+            "pdf",
+            "publications",
+            "xml",
             "literature"
         ]
     },
     {
-        "uid": "github/ropensci/gitignore",
-        "url": "https://github.com/ropensci/gitignore",
-        "rel": "/software/repository/github/ropensci/gitignore",
+        "uid": "github/ropensci/taxadb",
+        "url": "https://github.com/ropensci/taxadb",
+        "rel": "/software/repository/github/ropensci/taxadb",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "A R interface to fetch gitignore templates form gitignore.io",
+        "description": ":package: Taxonomic Database",
         "topics": [
-            "scalereprod"
+            "taxonomy"
         ]
     },
     {
-        "uid": "github/ropensci/BaseSet",
-        "url": "https://github.com/ropensci/BaseSet",
-        "rel": "/software/repository/github/ropensci/BaseSet",
+        "uid": "github/ropensci/DataSpaceR",
+        "url": "https://github.com/ropensci/DataSpaceR",
+        "rel": "/software/repository/github/ropensci/DataSpaceR",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Provides classes for working with sets",
+        "description": "R Interface to the CAVD DataSpace",
         "topics": [
-            "r",
-            "sets",
-            "package",
-            "r-package",
-            "bioconductor-package",
-            "bioconductor",
-            "scalereprod"
+            "cavd-dataspace",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/tiler",
-        "url": "https://github.com/ropensci/tiler",
-        "rel": "/software/repository/github/ropensci/tiler",
+        "uid": "github/ropensci/magick",
+        "url": "https://github.com/ropensci/magick",
+        "rel": "/software/repository/github/ropensci/magick",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Generate geographic and non-geographic map tiles from R",
+        "description": "Magic, madness, heaven, sin",
         "topics": [
+            "magick",
+            "imagemagick-wrapper",
+            "image-processing",
+            "image-manipulation",
             "r",
-            "r-package",
             "rstats",
-            "geospatial"
+            "image-magick",
+            "imagemagick",
+            "r-package"
         ]
     },
     {
-        "uid": "github/ropensci/opencontext",
-        "url": "https://github.com/ropensci/opencontext",
-        "rel": "/software/repository/github/ropensci/opencontext",
+        "uid": "github/ropensci/MODISTools",
+        "url": "https://github.com/ropensci/MODISTools",
+        "rel": "/software/repository/github/ropensci/MODISTools",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "API Client for the Open Context Archeological Database",
+        "description": "Interface to the MODIS Land Products Subsets Web Services",
+        "topics": [
+            "data-access"
+        ]
+    },
+    {
+        "uid": "github/ropensci/GSODR",
+        "url": "https://github.com/ropensci/GSODR",
+        "rel": "/software/repository/github/ropensci/GSODR",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "API Client for Global Surface Summary of the Day ('GSOD') Weather Data Client in R",
         "topics": [
             "r",
+            "weather-data",
+            "gsod",
+            "ncdc",
+            "weather-stations",
+            "global-data",
+            "data-access",
+            "ncei",
+            "weather",
+            "weather-information",
+            "historical-weather",
+            "historical-data",
+            "daily-data",
+            "daily-weather",
             "rstats",
             "r-package",
-            "data-access"
+            "global-weather",
+            "meteorological-data",
+            "meteorology",
+            "station-data",
+            "surface-weather",
+            "US-NCDC",
+            "US-NCEI"
         ]
     },
     {
-        "uid": "github/ropensci/gutenbergr",
-        "url": "https://github.com/ropensci/gutenbergr",
-        "rel": "/software/repository/github/ropensci/gutenbergr",
+        "uid": "github/ropensci/dataspice",
+        "url": "https://github.com/ropensci/dataspice",
+        "rel": "/software/repository/github/ropensci/dataspice",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Search and download public domain texts from Project Gutenberg",
+        "description": ":hot_pepper: Create lightweight schema.org descriptions of your datasets",
         "topics": [
+            "unconf18",
+            "schema-org",
+            "metadata",
+            "data",
+            "dataset",
             "r",
             "r-package",
             "rstats",
+            "unconf",
+            "data-publication"
+        ]
+    },
+    {
+        "uid": "github/ropensci/biomartr",
+        "url": "https://github.com/ropensci/biomartr",
+        "rel": "/software/repository/github/ropensci/biomartr",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Genomic Data Retrieval with R",
+        "topics": [
+            "r",
+            "genome-retrieval",
+            "biomart",
+            "database-retrieval",
+            "ncbi-genbank",
+            "genomics",
+            "ensembl-servers",
+            "sequenced-genomes",
+            "proteome",
+            "genome",
+            "genome-annotation",
+            "metagenomics",
+            "meta-analysis",
+            "rstats",
+            "r-package",
             "peer-reviewed",
+            "annotation-retrieval",
+            "biological-data-retrieval",
+            "BioMart",
+            "ENSEMBL",
+            "genomic-data-retrieval",
+            "NCBI",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/unrtf",
-        "url": "https://github.com/ropensci/unrtf",
-        "rel": "/software/repository/github/ropensci/unrtf",
+        "uid": "github/ropensci/fulltext",
+        "url": "https://github.com/ropensci/fulltext",
+        "rel": "/software/repository/github/ropensci/fulltext",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Wrapper for 'unrtf' utility to extract text from RTF documents",
+        "description": "Search across and get full text for OA & closed journals",
         "topics": [
-            "rtf",
+            "text-ming",
+            "pdf",
+            "metadata",
+            "open-access",
+            "xml",
             "extract-text",
-            "unrtf",
-            "r",
+            "crossref",
             "rstats",
+            "r",
             "r-package",
+            "citations",
+            "full-text",
+            "literature",
+            "publications",
+            "TDM",
+            "text-mining",
             "literature"
         ]
     },
     {
-        "uid": "github/ropensci/rsnps",
-        "url": "https://github.com/ropensci/rsnps",
-        "rel": "/software/repository/github/ropensci/rsnps",
+        "uid": "github/ropensci/arkdb",
+        "url": "https://github.com/ropensci/arkdb",
+        "rel": "/software/repository/github/ropensci/arkdb",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Wrapper to a number of SNP web APIs",
+        "description": "Archive and unarchive databases as flat text files",
         "topics": [
-            "web-api",
-            "snps",
-            "data",
+            "database",
+            "archiving",
+            "r",
+            "rstats",
+            "dbi",
+            "peer-reviewed",
+            "r-package",
+            "databases"
+        ]
+    },
+    {
+        "uid": "github/ropensci/rredlist",
+        "url": "https://github.com/ropensci/rredlist",
+        "rel": "/software/repository/github/ropensci/rredlist",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "IUCN Red List API Client",
+        "topics": [
+            "conservation",
+            "api-wrapper",
+            "biodiversity",
             "rstats",
+            "iucn-red-list",
+            "iucn",
             "r",
             "r-package",
+            "taxize",
             "API",
-            "api-client",
-            "dbSNP",
-            "gene",
-            "genotype",
-            "NCBI",
-            "OpenSNP",
-            "sequence",
-            "snp",
+            "habitat",
+            "IUCN",
             "species",
-            "web",
+            "traits",
+            "web-services",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/awardFindR",
-        "url": "https://github.com/ropensci/awardFindR",
-        "rel": "/software/repository/github/ropensci/awardFindR",
+        "uid": "github/ropensci/camsRad",
+        "url": "https://github.com/ropensci/camsRad",
+        "rel": "/software/repository/github/ropensci/camsRad",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Scan multiple online grant databases for relevant awards",
+        "description": "R Client for CAMS Radiation Service",
         "topics": [
+            "r",
+            "r-package",
+            "rstats",
+            "peer-reviewed",
             "data-access"
         ]
     },
@@ -20978,241 +20994,221 @@
         ]
     },
     {
-        "uid": "github/ropensci/cRegulome",
-        "url": "https://github.com/ropensci/cRegulome",
-        "rel": "/software/repository/github/ropensci/cRegulome",
+        "uid": "github/ropensci/hoardr",
+        "url": "https://github.com/ropensci/hoardr",
+        "rel": "/software/repository/github/ropensci/hoardr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "An R package to access, manage and visualize regulome (microRNA/transcription factors)-gene correlations in cancer",
+        "description": "manage cached files",
         "topics": [
+            "caching",
             "r",
-            "database",
-            "datascience",
-            "cancer-genomics",
-            "tcga-data",
-            "transcription-factors",
-            "microrna",
             "rstats",
             "r-package",
-            "peer-reviewed",
-            "data-access"
+            "data",
+            "files",
+            "pdf",
+            "xml",
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/gtfsr",
-        "url": "https://github.com/ropensci/gtfsr",
-        "rel": "/software/repository/github/ropensci/gtfsr",
+        "uid": "github/ropensci/nbaR",
+        "url": "https://github.com/ropensci/nbaR",
+        "rel": "/software/repository/github/ropensci/nbaR",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Package for obtaining, validating, viewing, and storing GTFS (transit) data",
+        "description": "R client library for the Netherlands Biodiversity Api (NBA)",
         "topics": [
             "r",
-            "rstats",
-            "r-package",
-            "peer-reviewed",
+            "biodiversity-data",
+            "api-client",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/wdman",
-        "url": "https://github.com/ropensci/wdman",
-        "rel": "/software/repository/github/ropensci/wdman",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Webdriver/Selenium Binary Manager",
+        "uid": "github/ropensci/rentrez",
+        "url": "https://github.com/ropensci/rentrez",
+        "rel": "/software/repository/github/ropensci/rentrez",
+        "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
+        "description": "talk with NCBI entrez using R",
         "topics": [
             "r",
-            "selenium",
-            "webdriver",
-            "webdriver-manager",
-            "rselenium",
-            "r-package",
             "rstats",
-            "http-tools"
+            "r-package"
         ]
     },
     {
-        "uid": "github/ropensci/rperseus",
-        "url": "https://github.com/ropensci/rperseus",
-        "rel": "/software/repository/github/ropensci/rperseus",
+        "uid": "github/ropensci/wellknown",
+        "url": "https://github.com/ropensci/wellknown",
+        "rel": "/software/repository/github/ropensci/wellknown",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Get texts from the Perseus Digital Library :hocho: :snake: :snake: :snake:",
+        "description": "WKT <-> GeoJSON",
         "topics": [
-            "greek-bible",
-            "greek-new-testament",
-            "latin",
-            "classics",
-            "greek",
-            "perseus",
-            "perseus-digital-library",
-            "translation",
-            "r",
+            "geojson",
+            "wkt",
+            "wkb",
             "rstats",
+            "wellknown",
+            "geospatial",
+            "spatial",
+            "r",
             "r-package",
-            "peer-reviewed",
-            "data-access"
+            "binary",
+            "conversion",
+            "well-known-text"
         ]
     },
     {
-        "uid": "github/ropensci/spocc",
-        "url": "https://github.com/ropensci/spocc",
-        "rel": "/software/repository/github/ropensci/spocc",
+        "uid": "github/ropensci/osmextract",
+        "url": "https://github.com/ropensci/osmextract",
+        "rel": "/software/repository/github/ropensci/osmextract",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Species occurrence data toolkit for R",
+        "description": "Download and import OpenStreetMap data from Geofabrik and other providers",
         "topics": [
-            "gbif",
-            "vertnet",
-            "ecoengine",
-            "antweb",
-            "ebird",
-            "data",
-            "api",
+            "osm",
+            "osm-pbf",
             "rstats",
             "r",
-            "species",
-            "inaturalist",
-            "idigbio",
-            "obis",
-            "bison",
-            "species-occurrence",
-            "occurrence",
-            "spocc",
-            "r-package",
-            "ALA",
-            "API",
-            "BISON",
-            "eBird",
-            "GBIF",
-            "iDigBio",
-            "INAT",
-            "OBIS",
-            "occurrences",
-            "specimens",
-            "taxonomy",
-            "Vertnet",
-            "web-services",
-            "data-access"
+            "open-data",
+            "geofabrik-zone",
+            "geo",
+            "geospatial"
         ]
     },
     {
-        "uid": "github/ropensci/rdatacite",
-        "url": "https://github.com/ropensci/rdatacite",
-        "rel": "/software/repository/github/ropensci/rdatacite",
+        "uid": "github/ropensci/git2r",
+        "url": "https://github.com/ropensci/git2r",
+        "rel": "/software/repository/github/ropensci/git2r",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Wrapper to DataCite metadata",
+        "description": "R bindings to the libgit2 library",
         "topics": [
-            "datacite",
-            "oai-pmh",
-            "metadata",
-            "api-wrapper",
-            "rstats",
+            "libgit2",
+            "libgit2-library",
+            "git",
+            "git-client",
             "r",
-            "solr",
-            "identifier",
+            "rstats",
             "r-package",
-            "API",
-            "data",
-            "dataset",
-            "https",
-            "scholarly",
-            "web-services",
-            "literature"
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/emld",
-        "url": "https://github.com/ropensci/emld",
-        "rel": "/software/repository/github/ropensci/emld",
+        "uid": "github/ropensci/comtradr",
+        "url": "https://github.com/ropensci/comtradr",
+        "rel": "/software/repository/github/ropensci/comtradr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": ":package: JSON-LD representation of EML",
+        "description": "Functions for Interacting with the UN Comtrade API",
         "topics": [
-            "data-extraction"
+            "comtrade",
+            "api",
+            "supply-chain",
+            "r",
+            "rstats",
+            "r-package",
+            "peer-reviewed",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/chlorpromazineR",
-        "url": "https://github.com/ropensci/chlorpromazineR",
-        "rel": "/software/repository/github/ropensci/chlorpromazineR",
+        "uid": "github/ropensci/exoplanets",
+        "url": "https://github.com/ropensci/exoplanets",
+        "rel": "/software/repository/github/ropensci/exoplanets",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Calculate chlorpromazine-equivalent doses in R",
+        "description": ":earth_americas: Provides access to NASA's Exoplanet Archive",
         "topics": [
-            "psychiatry",
-            "pharmacology",
-            "r",
-            "antipsychotic",
-            "schizophrenia",
-            "scalereprod"
+            "rstats",
+            "nasa",
+            "exoplanets",
+            "api",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/grainchanger",
-        "url": "https://github.com/ropensci/grainchanger",
-        "rel": "/software/repository/github/ropensci/grainchanger",
+        "uid": "github/ropensci/restez",
+        "url": "https://github.com/ropensci/restez",
+        "rel": "/software/repository/github/ropensci/restez",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Data aggregation methods for raster data",
+        "description": ":sleeping: :open_file_folder: Create and Query a Local Copy of GenBank in R",
         "topics": [
-            "geospatial"
+            "genbank",
+            "dna",
+            "sequence",
+            "entrez",
+            "r",
+            "r-package",
+            "rstats",
+            "data-extraction"
         ]
     },
     {
-        "uid": "github/ropensci/Rclean",
-        "url": "https://github.com/ropensci/Rclean",
-        "rel": "/software/repository/github/ropensci/Rclean",
+        "uid": "github/ropensci/pendulum",
+        "url": "https://github.com/ropensci/pendulum",
+        "rel": "/software/repository/github/ropensci/pendulum",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Isolate essential code to re-produce specific results.",
+        "description": "a date/time replacement pkg for R to facilitate time hacking",
         "topics": [
+            "r",
+            "rstats",
+            "time-mock",
+            "mock-time",
             "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/MODISTools",
-        "url": "https://github.com/ropensci/MODISTools",
-        "rel": "/software/repository/github/ropensci/MODISTools",
+        "uid": "github/ropensci/rnaturalearthdata",
+        "url": "https://github.com/ropensci/rnaturalearthdata",
+        "rel": "/software/repository/github/ropensci/rnaturalearthdata",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Interface to the MODIS Land Products Subsets Web Services",
+        "description": "to hold data used by rnaturalearth",
         "topics": [
-            "data-access"
+            "r",
+            "r-package",
+            "rstats",
+            "geospatial"
         ]
     },
     {
-        "uid": "github/ropensci/workloopR",
-        "url": "https://github.com/ropensci/workloopR",
-        "rel": "/software/repository/github/ropensci/workloopR",
+        "uid": "github/ropensci/osmdata",
+        "url": "https://github.com/ropensci/osmdata",
+        "rel": "/software/repository/github/ropensci/osmdata",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "\ud83d\udcaa Analysis of work loops and other data from muscle physiology experiments",
+        "description": "R package for downloading OpenStreetMap data",
         "topics": [
-            "muscle-physiology-experiments",
-            "work-loop",
-            "muscle-force",
-            "tetanus",
-            "workloop",
-            "ddf",
+            "overpass-api",
+            "openstreetmap",
             "r",
-            "r-package",
+            "cpp",
             "rstats",
-            "data-extraction"
+            "osm",
+            "osm-data",
+            "r-package",
+            "peer-reviewed",
+            "open0street0map",
+            "OSM",
+            "overpass0API",
+            "geospatial"
         ]
     },
     {
-        "uid": "github/ropensci/camsRad",
-        "url": "https://github.com/ropensci/camsRad",
-        "rel": "/software/repository/github/ropensci/camsRad",
+        "uid": "github/ropensci/textreuse",
+        "url": "https://github.com/ropensci/textreuse",
+        "rel": "/software/repository/github/ropensci/textreuse",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R Client for CAMS Radiation Service",
+        "description": "Detect text reuse and document similarity",
         "topics": [
             "r",
-            "r-package",
             "rstats",
+            "r-package",
             "peer-reviewed",
-            "data-access"
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/rzmq",
-        "url": "https://github.com/ropensci/rzmq",
-        "rel": "/software/repository/github/ropensci/rzmq",
+        "uid": "github/ropensci/datapack",
+        "url": "https://github.com/ropensci/datapack",
+        "rel": "/software/repository/github/ropensci/datapack",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R package for ZMQ",
+        "description": "An R package to handle data packages",
         "topics": [
-            "zmq",
-            "zeromq",
             "r",
             "rstats",
             "r-package",
@@ -21220,187 +21216,256 @@
         ]
     },
     {
-        "uid": "github/ropensci/osfr",
-        "url": "https://github.com/ropensci/osfr",
-        "rel": "/software/repository/github/ropensci/osfr",
+        "uid": "github/ropensci/DoOR.functions",
+        "url": "https://github.com/ropensci/DoOR.functions",
+        "rel": "/software/repository/github/ropensci/DoOR.functions",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R interface to the Open Science Framework (OSF)",
+        "description": "R package containing the functions used to build the Database of Odor Responses",
         "topics": [
-            "osf",
-            "open-science",
-            "reproducible-research",
-            "scalereprod"
+            "r",
+            "rstats",
+            "r-package",
+            "peer-reviewed",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/rbhl",
-        "url": "https://github.com/ropensci/rbhl",
-        "rel": "/software/repository/github/ropensci/rbhl",
+        "uid": "github/ropensci/bikedata",
+        "url": "https://github.com/ropensci/bikedata",
+        "rel": "/software/repository/github/ropensci/bikedata",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R interface to the Biodiversity Heritage Library (BHL) API",
+        "description": ":bike: Extract data from public hire bicycle systems",
         "topics": [
-            "web-api",
-            "biodiversity-heritage-library",
-            "data",
-            "metadata",
-            "api-wrapper",
+            "bicycle-hire-systems",
             "r",
             "rstats",
-            "r-package",
-            "API",
-            "BHL",
-            "conservation",
-            "library",
-            "OCR",
-            "species",
-            "taxonomy",
-            "text-mining",
-            "web-services",
+            "bike-hire",
+            "bicycle-hire",
+            "database",
+            "bike-data",
+            "r-package",
+            "peer-reviewed",
+            "bike-hire-systems",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/rcol",
-        "url": "https://github.com/ropensci/rcol",
-        "rel": "/software/repository/github/ropensci/rcol",
+        "uid": "github/ropensci/randgeo",
+        "url": "https://github.com/ropensci/randgeo",
+        "rel": "/software/repository/github/ropensci/randgeo",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "client for Catalogue of Life REST API",
+        "description": "random WKT or GeoJSON",
         "topics": [
-            "taxonomy",
-            "api-client",
+            "geojson",
+            "wkt",
             "rstats",
             "r",
-            "API",
-            "biology",
-            "science",
-            "species",
-            "web",
-            "data-access"
+            "r-package",
+            "geospatial"
         ]
     },
     {
-        "uid": "github/ropensci/jenkins",
-        "url": "https://github.com/ropensci/jenkins",
-        "rel": "/software/repository/github/ropensci/jenkins",
+        "uid": "github/ropensci/mapr",
+        "url": "https://github.com/ropensci/mapr",
+        "rel": "/software/repository/github/ropensci/mapr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Simple Jenkins client for R",
+        "description": "Map species occurrence data",
         "topics": [
-            "scalereprod"
+            "rstats",
+            "ggplot2",
+            "leaflet",
+            "map",
+            "mapping",
+            "biodiversity",
+            "r",
+            "spocc",
+            "r-package",
+            "ggplot",
+            "interactive",
+            "maps",
+            "occurrences",
+            "geospatial"
         ]
     },
     {
-        "uid": "github/ropensci/mregions",
-        "url": "https://github.com/ropensci/mregions",
-        "rel": "/software/repository/github/ropensci/mregions",
+        "uid": "github/ropensci/suppdata",
+        "url": "https://github.com/ropensci/suppdata",
+        "rel": "/software/repository/github/ropensci/suppdata",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "MarineRegions R client",
+        "description": "Grabbing SUPPlementary DATA in R",
         "topics": [
+            "r",
             "rstats",
+            "r-package",
+            "peer-reviewed",
+            "data-access"
+        ]
+    },
+    {
+        "uid": "github/ropensci/osmplotr",
+        "url": "https://github.com/ropensci/osmplotr",
+        "rel": "/software/repository/github/ropensci/osmplotr",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Data visualisation using OpenStreetMap objects",
+        "topics": [
+            "osm",
+            "openstreetmap",
+            "overpass-api",
+            "overpass",
+            "data-visualisation",
+            "highlighting-clusters",
             "r",
-            "marine",
-            "spatial",
+            "rstats",
             "r-package",
             "peer-reviewed",
             "geospatial"
         ]
     },
     {
-        "uid": "github/ropensci/outcomerate",
-        "url": "https://github.com/ropensci/outcomerate",
-        "rel": "/software/repository/github/ropensci/outcomerate",
+        "uid": "github/ropensci/parzer",
+        "url": "https://github.com/ropensci/parzer",
+        "rel": "/software/repository/github/ropensci/parzer",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "AAPOR Survey Outcome Rates",
+        "description": "Parse geographic coordinates",
         "topics": [
             "r",
-            "survey",
-            "aapor",
-            "standards",
-            "disposition-codes",
-            "peer-reviewed",
-            "r-package",
             "rstats",
-            "scalereprod"
+            "geo",
+            "geospatial",
+            "parser",
+            "coordinates",
+            "data",
+            "latitude",
+            "longitude"
         ]
     },
     {
-        "uid": "github/ropensci/crul",
-        "url": "https://github.com/ropensci/crul",
-        "rel": "/software/repository/github/ropensci/crul",
+        "uid": "github/ropensci/photosearcher",
+        "url": "https://github.com/ropensci/photosearcher",
+        "rel": "/software/repository/github/ropensci/photosearcher",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R6 based http client for R (made for developers)",
+        "description": "Searches Flickr for photographs and metadata ",
         "topics": [
-            "http",
-            "curl",
-            "async",
-            "rstats",
-            "api",
+            "data-access"
+        ]
+    },
+    {
+        "uid": "github/ropensci/cld2",
+        "url": "https://github.com/ropensci/cld2",
+        "rel": "/software/repository/github/ropensci/cld2",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "R Wrapper for Google's Compact Language Detector 2",
+        "topics": [
+            "cld",
+            "cld2",
+            "language-detection",
+            "language-detector",
             "r",
+            "rstats",
             "r-package",
-            "API",
-            "caching",
-            "download",
-            "https",
-            "libcurl",
-            "mocking",
-            "web-services",
-            "http-tools"
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/vcr",
-        "url": "https://github.com/ropensci/vcr",
-        "rel": "/software/repository/github/ropensci/vcr",
+        "uid": "github/ropensci/cld3",
+        "url": "https://github.com/ropensci/cld3",
+        "rel": "/software/repository/github/ropensci/cld3",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Record HTTP calls and replay them",
+        "description": "Bindings to Google's Compact Language Detector 3 ",
         "topics": [
-            "unit-testing",
-            "testing",
-            "mocking",
-            "rstats",
-            "vcr",
+            "cld",
+            "cld3",
+            "language-detection",
+            "language-detector",
             "r",
+            "rstats",
             "r-package",
-            "API",
-            "curl",
-            "http",
-            "http-mocking",
-            "https",
-            "mock",
-            "tdd",
-            "testing-tools",
-            "web-services",
-            "http-tools"
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/europepmc",
-        "url": "https://github.com/ropensci/europepmc",
-        "rel": "/software/repository/github/ropensci/europepmc",
+        "uid": "github/ropensci/bib2df",
+        "url": "https://github.com/ropensci/bib2df",
+        "rel": "/software/repository/github/ropensci/bib2df",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R Interface to Europe PMC RESTful Web Service",
+        "description": "Parse a BibTeX file to a tibble",
         "topics": [
-            "europe-pmc",
+            "bibtex",
             "r",
             "rstats",
+            "r-package",
+            "peer-reviewed",
+            "data-extraction"
+        ]
+    },
+    {
+        "uid": "github/ropensci/tidypmc",
+        "url": "https://github.com/ropensci/tidypmc",
+        "rel": "/software/repository/github/ropensci/tidypmc",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Parse full text XML documents from Pubmed Central",
+        "topics": [
+            "literature"
+        ]
+    },
+    {
+        "uid": "github/ropensci/rAltmetric",
+        "url": "https://github.com/ropensci/rAltmetric",
+        "rel": "/software/repository/github/ropensci/rAltmetric",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Query and visualize metrics from altmetric.com",
+        "topics": [
+            "altmetrics",
+            "r",
+            "citations",
             "bibliometrics",
-            "scientific-literature",
-            "scientific-publications",
+            "rstats",
             "r-package",
-            "pubmed",
-            "pubmedcentral",
             "literature"
         ]
     },
     {
-        "uid": "github/ropensci/internetarchive",
-        "url": "https://github.com/ropensci/internetarchive",
-        "rel": "/software/repository/github/ropensci/internetarchive",
+        "uid": "github/ropensci/rdflib",
+        "url": "https://github.com/ropensci/rdflib",
+        "rel": "/software/repository/github/ropensci/rdflib",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Search the Internet Archive, retrieve metadata, and download files",
+        "description": ":package: High level wrapper around the redland package for common rdf applications ",
         "topics": [
             "r",
             "rstats",
             "r-package",
+            "peer-reviewed",
+            "data-extraction"
+        ]
+    },
+    {
+        "uid": "github/ropensci/popler",
+        "url": "https://github.com/ropensci/popler",
+        "rel": "/software/repository/github/ropensci/popler",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "The R package to browse and query the popler database",
+        "topics": [
+            "data-access"
+        ]
+    },
+    {
+        "uid": "github/ropensci/riem",
+        "url": "https://github.com/ropensci/riem",
+        "rel": "/software/repository/github/ropensci/riem",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": ":airplane: :sunny: R package for accessing ASOS data via the Iowa Environment Mesonet :cloud: :airplane:",
+        "topics": [
+            "weather",
+            "weather-api",
+            "asos",
+            "r",
+            "airports",
+            "temperature",
+            "metar",
+            "rstats",
+            "iowa-environment-mesonet",
+            "r-package",
+            "peer-reviewed",
             "data-access"
         ]
     },
@@ -21429,417 +21494,564 @@
         ]
     },
     {
-        "uid": "github/ropensci/spatsoc",
-        "url": "https://github.com/ropensci/spatsoc",
-        "rel": "/software/repository/github/ropensci/spatsoc",
+        "uid": "github/ropensci/osfr",
+        "url": "https://github.com/ropensci/osfr",
+        "rel": "/software/repository/github/ropensci/osfr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": ":package: spatsoc is an R package for detecting spatial and temporal groups in GPS relocations. ",
+        "description": "R interface to the Open Science Framework (OSF)",
+        "topics": [
+            "osf",
+            "open-science",
+            "reproducible-research",
+            "scalereprod"
+        ]
+    },
+    {
+        "uid": "github/ropensci/hddtools",
+        "url": "https://github.com/ropensci/hddtools",
+        "rel": "/software/repository/github/ropensci/hddtools",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Hydrological Data Discovery Tools (R package for hydrology and open data)",
         "topics": [
             "r",
-            "spatial",
-            "social",
-            "gps",
-            "animal",
-            "network",
-            "r-package",
             "rstats",
-            "geospatial"
+            "r-package",
+            "hydrology",
+            "sepa",
+            "precipitation",
+            "mopex",
+            "data60uk",
+            "grdc",
+            "kgclimateclass",
+            "peer-reviewed",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/randgeo",
-        "url": "https://github.com/ropensci/randgeo",
-        "rel": "/software/repository/github/ropensci/randgeo",
+        "uid": "github/ropensci/refimpact",
+        "url": "https://github.com/ropensci/refimpact",
+        "rel": "/software/repository/github/ropensci/refimpact",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "random WKT or GeoJSON",
+        "description": "API wrapper for UK Research Excellence Framework 2014 Impact Case Studies Database",
         "topics": [
-            "geojson",
-            "wkt",
-            "rstats",
+            "uk",
+            "research-funding",
+            "research-improvement",
+            "directed-graph",
+            "directed-graphs",
+            "text-mining",
+            "research-policy",
             "r",
+            "rstats",
             "r-package",
-            "geospatial"
+            "peer-reviewed",
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/webchem",
-        "url": "https://github.com/ropensci/webchem",
-        "rel": "/software/repository/github/ropensci/webchem",
+        "uid": "github/ropensci/USAboundariesData",
+        "url": "https://github.com/ropensci/USAboundariesData",
+        "rel": "/software/repository/github/ropensci/USAboundariesData",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Chemical Information from the Web",
+        "description": "Datasets for the 'USAboundaries' package",
         "topics": [
-            "rstats",
-            "ropensci",
-            "chemical-information",
-            "webscraping",
-            "cas-number",
-            "chemspider",
-            "identifier",
             "r",
+            "rstats",
             "r-package",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/readODS",
-        "url": "https://github.com/ropensci/readODS",
-        "rel": "/software/repository/github/ropensci/readODS",
+        "uid": "github/ropensci/mregions",
+        "url": "https://github.com/ropensci/mregions",
+        "rel": "/software/repository/github/ropensci/mregions",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "read ODS files into R as data.frames",
-        "topics": []
+        "description": "MarineRegions R client",
+        "topics": [
+            "rstats",
+            "r",
+            "marine",
+            "spatial",
+            "r-package",
+            "peer-reviewed",
+            "geospatial"
+        ]
     },
     {
-        "uid": "github/ropensci/hunspell",
-        "url": "https://github.com/ropensci/hunspell",
-        "rel": "/software/repository/github/ropensci/hunspell",
+        "uid": "github/ropensci/excluder",
+        "url": "https://github.com/ropensci/excluder",
+        "rel": "/software/repository/github/ropensci/excluder",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "High-Performance Stemmer, Tokenizer, and Spell Checker for R",
+        "description": "Checks for Exclusion Criteria in Online Data",
         "topics": [
-            "spellchecker",
-            "hunspell",
-            "stemmer",
-            "tokenizer",
-            "spell-check",
+            "qualtrics",
+            "mturk",
+            "datacleaning",
+            "exclusion",
             "r",
             "rstats",
             "r-package",
-            "literature"
+            "data-extraction"
         ]
     },
     {
-        "uid": "github/ropensci/solrium",
-        "url": "https://github.com/ropensci/solrium",
-        "rel": "/software/repository/github/ropensci/solrium",
+        "uid": "github/ropensci/landscapetools",
+        "url": "https://github.com/ropensci/landscapetools",
+        "rel": "/software/repository/github/ropensci/landscapetools",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "A general purpose R interface to Solr",
+        "description": "\ud83d\udce6 R package for some of the less-glamorous tasks involved in landscape analysis \ud83c\udf0f",
         "topics": [
-            "solr",
-            "solr-client",
-            "solr-search",
-            "rstats",
-            "database",
             "r",
+            "rstats",
+            "raster",
+            "landscape",
+            "landscape-ecology",
+            "visualization",
+            "workflow",
             "r-package",
-            "API",
-            "JSON",
-            "search",
-            "web",
-            "XML",
-            "data-access"
+            "geospatial"
         ]
     },
     {
-        "uid": "github/ropensci/katex",
-        "url": "https://github.com/ropensci/katex",
-        "rel": "/software/repository/github/ropensci/katex",
+        "uid": "github/ropensci/phonfieldwork",
+        "url": "https://github.com/ropensci/phonfieldwork",
+        "rel": "/software/repository/github/ropensci/phonfieldwork",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Server side math to html rendering in R",
+        "description": "R package for phonetic research and experimenting",
         "topics": [
-            "literature"
+            "r",
+            "phonetics",
+            "phonology",
+            "fieldwork",
+            "praat",
+            "textgrid",
+            "elan",
+            "eaf",
+            "exmaralda",
+            "exb",
+            "flextext",
+            "audacity",
+            "srt-subtitles",
+            "data-extraction"
         ]
     },
     {
-        "uid": "github/ropensci/dataaimsr",
-        "url": "https://github.com/ropensci/dataaimsr",
-        "rel": "/software/repository/github/ropensci/dataaimsr",
+        "uid": "github/ropensci/mauricer",
+        "url": "https://github.com/ropensci/mauricer",
+        "rel": "/software/repository/github/ropensci/mauricer",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Australian Institute of Marine Science (AIMS) Data Platform API Client which provides easy access to AIMS Data Platform scientific data and information.",
+        "description": "Install BEAST2 packages from R",
         "topics": [
-            "aims",
-            "data",
-            "monitoring",
-            "weather",
-            "sst",
-            "australia",
-            "marine"
+            "r",
+            "r-package",
+            "rstats",
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/rcites",
-        "url": "https://github.com/ropensci/rcites",
-        "rel": "/software/repository/github/ropensci/rcites",
+        "uid": "github/ropensci/phylogram",
+        "url": "https://github.com/ropensci/phylogram",
+        "rel": "/software/repository/github/ropensci/phylogram",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": ":package: R package to access the CITES Speciesplus database ",
+        "description": "Dendrograms for Evolutionary Analysis",
         "topics": [
-            "cites",
-            "api-client",
-            "trade",
-            "endangered-species",
-            "r-package",
-            "database",
+            "peer-reviewed",
             "r",
+            "r-package",
             "rstats",
-            "data-access"
+            "data-extraction"
         ]
     },
     {
-        "uid": "github/ropensci/outsider",
-        "url": "https://github.com/ropensci/outsider",
-        "rel": "/software/repository/github/ropensci/outsider",
+        "uid": "github/ropensci/outsider.devtools",
+        "url": "https://github.com/ropensci/outsider.devtools",
+        "rel": "/software/repository/github/ropensci/outsider.devtools",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": ":black_square_button::registered: Install and run programs, outside of R, inside of R",
+        "description": "Build your own modules for `outsider`",
         "topics": [
-            "docker",
             "rstats",
-            "reproducibility",
+            "docker",
             "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/dittodb",
-        "url": "https://github.com/ropensci/dittodb",
-        "rel": "/software/repository/github/ropensci/dittodb",
+        "uid": "github/ropensci/RSelenium",
+        "url": "https://github.com/ropensci/RSelenium",
+        "rel": "/software/repository/github/ropensci/RSelenium",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "dittodb: A Test Environment for DB Queries in R",
+        "description": "An R client for Selenium Remote WebDriver",
         "topics": [
-            "databases"
+            "rselenium",
+            "webdriver",
+            "selenium",
+            "r",
+            "rstats",
+            "r-package",
+            "http-tools"
         ]
     },
     {
-        "uid": "github/ropensci/googleLanguageR",
-        "url": "https://github.com/ropensci/googleLanguageR",
-        "rel": "/software/repository/github/ropensci/googleLanguageR",
+        "uid": "github/ropensci/DataPackageR",
+        "url": "https://github.com/ropensci/DataPackageR",
+        "rel": "/software/repository/github/ropensci/DataPackageR",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R client for the Google Translation API, Google Cloud Natural Language API and Google Cloud Speech API",
+        "description": "An R package to enable reproducible data processing, packaging and sharing.",
         "topics": [
-            "cloud-speech-api",
-            "cloud-translation-api",
-            "translation-api",
-            "googleauthr",
-            "google-api-client",
             "r",
-            "rstats",
-            "google-cloud-speech",
-            "google-cloud",
-            "sentiment-analysis",
-            "google-nlp",
-            "natural-language-processing",
-            "speech-api",
             "r-package",
+            "reproducibility",
+            "rstats",
             "peer-reviewed",
-            "literature"
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/taxa",
-        "url": "https://github.com/ropensci/taxa",
-        "rel": "/software/repository/github/ropensci/taxa",
+        "uid": "github/ropensci/gitignore",
+        "url": "https://github.com/ropensci/gitignore",
+        "rel": "/software/repository/github/ropensci/gitignore",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "taxonomic classes for R",
+        "description": "A R interface to fetch gitignore templates form gitignore.io",
         "topics": [
-            "taxonomy",
-            "taxon",
-            "data-cleaning",
-            "rstats",
+            "scalereprod"
+        ]
+    },
+    {
+        "uid": "github/ropensci/iheatmapr",
+        "url": "https://github.com/ropensci/iheatmapr",
+        "rel": "/software/repository/github/ropensci/iheatmapr",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Complex, interactive heatmaps in R",
+        "topics": [
+            "heatmap",
+            "plotly",
             "r",
+            "interactive-visualizations",
+            "data-visualization",
+            "rstats",
             "r-package",
-            "biology",
-            "hierarchy"
+            "peer-reviewed",
+            "htmlwidgets"
         ]
     },
     {
-        "uid": "github/ropensci/FedData",
-        "url": "https://github.com/ropensci/FedData",
-        "rel": "/software/repository/github/ropensci/FedData",
+        "uid": "github/ropensci/neotoma",
+        "url": "https://github.com/ropensci/neotoma",
+        "rel": "/software/repository/github/ropensci/neotoma",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources",
+        "description": "Programmatic R interface to the Neotoma Paleoecological Database.",
         "topics": [
             "r",
             "rstats",
             "r-package",
-            "peer-reviewed",
+            "neotoma-database",
+            "neotoma-apis",
+            "neotoma",
+            "cran",
+            "paleoecology",
+            "nsf",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/rdefra",
-        "url": "https://github.com/ropensci/rdefra",
-        "rel": "/software/repository/github/ropensci/rdefra",
+        "uid": "github/ropensci/EML",
+        "url": "https://github.com/ropensci/EML",
+        "rel": "/software/repository/github/ropensci/EML",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "rdefra: Interact with the UK AIR Pollution Database from DEFRA",
+        "description": " Ecological Metadata Language interface for R: synthesis and integration of heterogenous data",
+        "topics": [
+            "metadata-standard",
+            "eml",
+            "eml-metadata",
+            "r",
+            "rstats",
+            "r-package",
+            "data-publication"
+        ]
+    },
+    {
+        "uid": "github/ropensci/gtfsr",
+        "url": "https://github.com/ropensci/gtfsr",
+        "rel": "/software/repository/github/ropensci/gtfsr",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Package for obtaining, validating, viewing, and storing GTFS (transit) data",
         "topics": [
             "r",
             "rstats",
             "r-package",
-            "uk",
-            "defra",
-            "air-pollution",
-            "air-quality",
-            "air-pollution-levels",
             "peer-reviewed",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/rAltmetric",
-        "url": "https://github.com/ropensci/rAltmetric",
-        "rel": "/software/repository/github/ropensci/rAltmetric",
+        "uid": "github/ropensci/AntWeb",
+        "url": "https://github.com/ropensci/AntWeb",
+        "rel": "/software/repository/github/ropensci/AntWeb",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Query and visualize metrics from altmetric.com",
+        "description": "An R wrapper for the AntWeb API",
         "topics": [
-            "altmetrics",
+            "antweb",
+            "antweb-api",
+            "specimen-records",
             "r",
-            "citations",
-            "bibliometrics",
             "rstats",
+            "spocc",
             "r-package",
-            "literature"
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/phylogram",
-        "url": "https://github.com/ropensci/phylogram",
-        "rel": "/software/repository/github/ropensci/phylogram",
+        "uid": "github/ropensci/stantargets",
+        "url": "https://github.com/ropensci/stantargets",
+        "rel": "/software/repository/github/ropensci/stantargets",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Dendrograms for Evolutionary Analysis",
+        "description": "Reproducible Bayesian data analysis pipelines with targets and cmdstanr",
         "topics": [
-            "peer-reviewed",
             "r",
-            "r-package",
             "rstats",
-            "data-extraction"
+            "reproducibility",
+            "high-performance-computing",
+            "stan",
+            "bayesian",
+            "statistics",
+            "targets",
+            "make",
+            "rstats-package",
+            "r-targetopia"
         ]
     },
     {
-        "uid": "github/ropensci/riem",
-        "url": "https://github.com/ropensci/riem",
-        "rel": "/software/repository/github/ropensci/riem",
+        "uid": "github/ropensci/stats19",
+        "url": "https://github.com/ropensci/stats19",
+        "rel": "/software/repository/github/ropensci/stats19",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": ":airplane: :sunny: R package for accessing ASOS data via the Iowa Environment Mesonet :cloud: :airplane:",
+        "description": "R package for working with open road traffic casualty data from Great Britain",
         "topics": [
-            "weather",
-            "weather-api",
-            "asos",
             "r",
-            "airports",
-            "temperature",
-            "metar",
-            "rstats",
-            "iowa-environment-mesonet",
             "r-package",
-            "peer-reviewed",
+            "rstats",
+            "car-crashes",
+            "data",
+            "road-safety",
+            "ropensci",
+            "stats19",
+            "transport",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/oai",
-        "url": "https://github.com/ropensci/oai",
-        "rel": "/software/repository/github/ropensci/oai",
+        "uid": "github/ropensci/ezknitr",
+        "url": "https://github.com/ropensci/ezknitr",
+        "rel": "/software/repository/github/ropensci/ezknitr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "OAI-PMH R client",
+        "description": "Avoid the typical working directory pain when using 'knitr'",
         "topics": [
-            "oai-pmh",
-            "rstats",
-            "data-access",
-            "scholarly-api",
+            "rmarkdown",
+            "knitr",
+            "rmd",
+            "reproducibility",
             "r",
+            "rstats",
             "r-package",
             "peer-reviewed",
-            "literature"
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/bomrang",
-        "url": "https://github.com/ropensci/bomrang",
-        "rel": "/software/repository/github/ropensci/bomrang",
+        "uid": "github/ropensci/nomisr",
+        "url": "https://github.com/ropensci/nomisr",
+        "rel": "/software/repository/github/ropensci/nomisr",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Australian government Bureau of Meteorology (BOM) data client for R",
+        "description": "Access UK official statistics from the Nomis database through R.",
         "topics": [
-            "bom",
-            "meteorological-data",
-            "weather-forecast",
-            "australia",
-            "weather",
-            "weather-data",
-            "meteorology",
             "r",
+            "geographic-data",
+            "census-data",
+            "uk",
+            "demography",
+            "api-client",
             "rstats",
-            "australia-bureau-of-meteorology",
+            "officialstatistics",
+            "official-statistics",
+            "national-statistics",
             "r-package",
             "peer-reviewed",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/nlrx",
-        "url": "https://github.com/ropensci/nlrx",
-        "rel": "/software/repository/github/ropensci/nlrx",
+        "uid": "github/ropensci/predictNMB",
+        "url": "https://github.com/ropensci/predictNMB",
+        "rel": "/software/repository/github/ropensci/predictNMB",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "nlrx NetLogo R",
+        "description": null,
+        "topics": []
+    },
+    {
+        "uid": "github/ropensci/MODIStsp",
+        "url": "https://github.com/ropensci/MODIStsp",
+        "rel": "/software/repository/github/ropensci/MODIStsp",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "An \"R\" package for automatic download and preprocessing of MODIS Land Products Time Series",
         "topics": [
-            "peer-reviewed",
-            "netlogo",
-            "individual-based-modelling",
-            "agent-based-modeling",
+            "modis",
+            "gdal",
             "r",
+            "preprocessing",
+            "time-series",
+            "remote-sensing",
+            "satellite-imagery",
+            "modis-data",
+            "modis-land-products",
+            "peer-reviewed",
             "r-package",
             "rstats",
-            "scalereprod"
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/pangaear",
-        "url": "https://github.com/ropensci/pangaear",
-        "rel": "/software/repository/github/ropensci/pangaear",
+        "uid": "github/ropensci/treedata.table",
+        "url": "https://github.com/ropensci/treedata.table",
+        "rel": "/software/repository/github/ropensci/treedata.table",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R client for the Pangaea database",
+        "description": "A wrapper for data.table that enables fast manipulation of  phylogenetic trees matched to data.",
         "topics": [
-            "paleobiology",
-            "scientific",
+            "data-extraction"
+        ]
+    },
+    {
+        "uid": "github/ropensci/scrubr",
+        "url": "https://github.com/ropensci/scrubr",
+        "rel": "/software/repository/github/ropensci/scrubr",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Clean species occurrence records",
+        "topics": [
+            "biodiversity",
+            "data-cleaning",
+            "gbif",
+            "rstats",
+            "r",
+            "spocc",
+            "r-package",
             "data",
+            "occurrences",
+            "specimens",
+            "data-extraction"
+        ]
+    },
+    {
+        "uid": "github/ropensci/tokenizers",
+        "url": "https://github.com/ropensci/tokenizers",
+        "rel": "/software/repository/github/ropensci/tokenizers",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Fast, Consistent Tokenization of Natural Language Text",
+        "topics": [
+            "text-mining",
+            "tokenizer",
             "rstats",
+            "nlp",
             "r",
             "r-package",
-            "api-client",
-            "webservice-client",
-            "archive",
-            "atmosphere",
-            "chemistry",
-            "earthscience",
-            "ecology",
-            "environmentalscience",
-            "paleontology",
-            "Pangaea",
-            "data-access"
+            "peer-reviewed",
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/targets",
-        "url": "https://github.com/ropensci/targets",
-        "rel": "/software/repository/github/ropensci/targets",
-        "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
-        "description": "Function-oriented Make-like declarative workflows for R",
+        "uid": "github/ropensci/binman",
+        "url": "https://github.com/ropensci/binman",
+        "rel": "/software/repository/github/ropensci/binman",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "A Binary Download Manager",
         "topics": [
-            "reproducibility",
-            "high-performance-computing",
             "r",
-            "data-science",
-            "pipeline",
-            "rstats",
             "r-package",
-            "workflow",
-            "targets",
-            "reproducible-research",
-            "make",
-            "r-targetopia",
-            "peer-reviewed"
+            "rstats",
+            "http-tools"
         ]
     },
     {
-        "uid": "github/ropensci/citesdb",
-        "url": "https://github.com/ropensci/citesdb",
-        "rel": "/software/repository/github/ropensci/citesdb",
+        "uid": "github/ropensci/clifro",
+        "url": "https://github.com/ropensci/clifro",
+        "rel": "/software/repository/github/ropensci/clifro",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "A high-performance database of shipment-level CITES trade data",
+        "description": "Easily download and visualise climate data from CliFlo",
         "topics": [
             "r",
+            "climate-data",
+            "climate-stations",
+            "national-climate-database",
+            "zealand",
+            "kml",
+            "windrose",
+            "weather",
             "rstats",
             "r-package",
-            "wildlife",
-            "dataset",
+            "api",
+            "cliflo",
+            "climate",
+            "data",
+            "opensci",
+            "rain",
+            "temperature",
+            "wind",
+            "data-access"
+        ]
+    },
+    {
+        "uid": "github/ropensci/eia",
+        "url": "https://github.com/ropensci/eia",
+        "rel": "/software/repository/github/ropensci/eia",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "An R package wrapping the US Energy Information Administration open data API.",
+        "topics": [
+            "eia-api",
+            "r-package",
+            "energy-data",
+            "energy-information-administration",
+            "open-data",
+            "eia",
+            "cran",
             "data-access"
         ]
     },
+    {
+        "uid": "github/ropensci/wdman",
+        "url": "https://github.com/ropensci/wdman",
+        "rel": "/software/repository/github/ropensci/wdman",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Webdriver/Selenium Binary Manager",
+        "topics": [
+            "r",
+            "selenium",
+            "webdriver",
+            "webdriver-manager",
+            "rselenium",
+            "r-package",
+            "rstats",
+            "http-tools"
+        ]
+    },
+    {
+        "uid": "github/ropensci/citecorp",
+        "url": "https://github.com/ropensci/citecorp",
+        "rel": "/software/repository/github/ropensci/citecorp",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "Client for the Open Citations Corpus",
+        "topics": [
+            "opencitations",
+            "citations",
+            "doi",
+            "pmid",
+            "pmcid",
+            "sparql",
+            "r",
+            "r-package",
+            "rstats",
+            "bibtex",
+            "citation",
+            "metadata",
+            "literature"
+        ]
+    },
     {
         "uid": "github/ropensci/rtika",
         "url": "https://github.com/ropensci/rtika",
@@ -21862,105 +22074,84 @@
         ]
     },
     {
-        "uid": "github/ropensci/DataPackageR",
-        "url": "https://github.com/ropensci/DataPackageR",
-        "rel": "/software/repository/github/ropensci/DataPackageR",
+        "uid": "github/ropensci/rAvis",
+        "url": "https://github.com/ropensci/rAvis",
+        "rel": "/software/repository/github/ropensci/rAvis",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "An R package to enable reproducible data processing, packaging and sharing.",
+        "description": "rAvis: an R-package to download the information stored in \u201cproyectoavis\u201d, a citizen science bird project. ",
         "topics": [
             "r",
-            "r-package",
-            "reproducibility",
-            "rstats",
-            "peer-reviewed",
-            "scalereprod"
-        ]
-    },
-    {
-        "uid": "github/ropensci/isdparser",
-        "url": "https://github.com/ropensci/isdparser",
-        "rel": "/software/repository/github/ropensci/isdparser",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "NOAA ISD/ISH file parser",
-        "topics": [
-            "noaa",
-            "climate",
             "rstats",
-            "isd",
-            "noaa-isd",
-            "r",
+            "avis",
+            "citizen-science",
+            "bird",
+            "birds",
+            "proyectoavis",
             "r-package",
-            "data",
-            "ISD",
-            "NOAA",
-            "stations",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/dbhydroR",
-        "url": "https://github.com/ropensci/dbhydroR",
-        "rel": "/software/repository/github/ropensci/dbhydroR",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R interface to the South Florida Water Management District's DBHYDRO Database :sweat_drops::palm_tree:",
+        "uid": "github/ropensci/plotly",
+        "url": "https://github.com/ropensci/plotly",
+        "rel": "/software/repository/github/ropensci/plotly",
+        "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
+        "description": "An interactive graphing library for R",
         "topics": [
-            "water-quality",
-            "water-resources",
-            "ecology",
-            "geoscience",
-            "groundwater",
-            "government-data",
             "r",
+            "ggplot2",
+            "javascript",
+            "data-visualization",
+            "d3js",
+            "shiny",
+            "plotly",
+            "webgl",
             "rstats",
-            "r-package",
-            "peer-reviewed",
-            "data-access"
+            "r-package"
         ]
     },
     {
-        "uid": "github/ropensci/osmdata",
-        "url": "https://github.com/ropensci/osmdata",
-        "rel": "/software/repository/github/ropensci/osmdata",
+        "uid": "github/ropensci/fauxpas",
+        "url": "https://github.com/ropensci/fauxpas",
+        "rel": "/software/repository/github/ropensci/fauxpas",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R package for downloading OpenStreetMap data",
+        "description": "fauxpas does http errors",
         "topics": [
-            "overpass-api",
-            "openstreetmap",
-            "r",
-            "cpp",
+            "http",
+            "error-handling",
             "rstats",
-            "osm",
-            "osm-data",
+            "r",
             "r-package",
-            "peer-reviewed",
-            "open0street0map",
-            "OSM",
-            "overpass0API",
-            "geospatial"
+            "API",
+            "curl",
+            "error",
+            "errors",
+            "https",
+            "web-services",
+            "http-tools"
         ]
     },
     {
-        "uid": "github/ropensci/rorcid",
-        "url": "https://github.com/ropensci/rorcid",
-        "rel": "/software/repository/github/ropensci/rorcid",
+        "uid": "github/ropensci/spiro",
+        "url": "https://github.com/ropensci/spiro",
+        "rel": "/software/repository/github/ropensci/spiro",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "A programmatic interface the Orcid.org API",
+        "description": "Work with data from cardiopulmonary exercise testing",
+        "topics": []
+    },
+    {
+        "uid": "github/ropensci/osmapiR",
+        "url": "https://github.com/ropensci/osmapiR",
+        "rel": "/software/repository/github/ropensci/osmapiR",
+        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
+        "description": "An R interface to OpenStreetMap API for fetching and saving data from/to the OpenStreetMap database",
         "topics": [
-            "api-wrapper",
-            "orcid",
-            "doi",
-            "scholarly-metadata",
-            "identifiers",
-            "rstats",
+            "openstreetmap",
+            "openstreetmap-api",
+            "osm",
             "r",
-            "orcid-api",
             "r-package",
-            "citations",
-            "literature",
-            "people",
-            "publications",
-            "scholarly",
-            "literature"
+            "osmapi"
         ]
     },
     {
@@ -21982,327 +22173,240 @@
         ]
     },
     {
-        "uid": "github/ropensci/webmockr",
-        "url": "https://github.com/ropensci/webmockr",
-        "rel": "/software/repository/github/ropensci/webmockr",
+        "uid": "github/ropensci/ruODK",
+        "url": "https://github.com/ropensci/ruODK",
+        "rel": "/software/repository/github/ropensci/ruODK",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R library for stubbing and setting expectations on HTTP requests",
+        "description": "ruODK: An R Client for the ODK Central API",
         "topics": [
-            "http",
-            "http-mocking",
+            "opendatakit",
+            "odata",
+            "odata-client",
+            "odk",
+            "odk-central",
             "rstats",
-            "http-mock",
-            "mock",
-            "fakeweb",
-            "tdd",
-            "testing-tools",
-            "testing",
-            "r",
             "r-package",
-            "API",
-            "curl",
-            "https",
-            "mocking",
-            "web-services",
-            "http-tools"
+            "api",
+            "data",
+            "database",
+            "dataset",
+            "open-data",
+            "scalereprod"
         ]
     },
     {
-        "uid": "github/ropensci/namext",
-        "url": "https://github.com/ropensci/namext",
-        "rel": "/software/repository/github/ropensci/namext",
+        "uid": "github/ropensci/wikitaxa",
+        "url": "https://github.com/ropensci/wikitaxa",
+        "rel": "/software/repository/github/ropensci/wikitaxa",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "extract scientific names from papers/articles/text using gnfinder (https://github.com/gnames/gnfinder)",
+        "description": "taxonomy data from Wikipedia/Wikidata/Wikispecies",
         "topics": [
+            "taxonomy",
+            "wikipedia-api",
+            "wikispecies",
             "r",
             "rstats",
-            "taxonomy"
+            "r-package",
+            "taxize",
+            "API",
+            "species",
+            "vernacular",
+            "web-services",
+            "Wikicommons",
+            "Wikipedia",
+            "Wikispecies"
         ]
     },
     {
-        "uid": "github/ropensci/assertr",
-        "url": "https://github.com/ropensci/assertr",
-        "rel": "/software/repository/github/ropensci/assertr",
+        "uid": "github/ropensci/censo2017",
+        "url": "https://github.com/ropensci/censo2017",
+        "rel": "/software/repository/github/ropensci/censo2017",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Assertive programming for R analysis pipelines",
+        "description": "Una Base de Datos de Alto Rendimiento del Censo 2017 de Chile.",
         "topics": [
-            "predicate-functions",
-            "analysis-pipeline",
-            "assertions",
-            "assertion-methods",
-            "assertion-library",
-            "r",
+            "chile",
+            "censo",
+            "census",
+            "demografia",
+            "demographics",
             "rstats",
-            "r-package",
-            "peer-reviewed",
-            "scalereprod"
+            "redatam",
+            "duckdb",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/iheatmapr",
-        "url": "https://github.com/ropensci/iheatmapr",
-        "rel": "/software/repository/github/ropensci/iheatmapr",
+        "uid": "github/ropensci/trufflesniffer",
+        "url": "https://github.com/ropensci/trufflesniffer",
+        "rel": "/software/repository/github/ropensci/trufflesniffer",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Complex, interactive heatmaps in R",
+        "description": "snif out truffles (secrets) [passwords, tokens, api keys]",
         "topics": [
-            "heatmap",
-            "plotly",
             "r",
-            "interactive-visualizations",
-            "data-visualization",
             "rstats",
+            "secrets",
             "r-package",
-            "peer-reviewed",
-            "htmlwidgets"
+            "truffle",
+            "http-tools"
         ]
     },
     {
-        "uid": "github/ropensci/taxview",
-        "url": "https://github.com/ropensci/taxview",
-        "rel": "/software/repository/github/ropensci/taxview",
+        "uid": "github/ropensci/rrricanes",
+        "url": "https://github.com/ropensci/rrricanes",
+        "rel": "/software/repository/github/ropensci/rrricanes",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Summarise and visualize data sets wrt taxonomy",
+        "description": "Web scraper for Atlantic and east Pacific hurricanes and tropical storms",
         "topics": [
             "r",
+            "hurricane",
+            "weather",
             "rstats",
             "r-package",
-            "taxonomy"
+            "peer-reviewed",
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/rfigshare",
-        "url": "https://github.com/ropensci/rfigshare",
-        "rel": "/software/repository/github/ropensci/rfigshare",
+        "uid": "github/ropensci/geonames",
+        "url": "https://github.com/ropensci/geonames",
+        "rel": "/software/repository/github/ropensci/geonames",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Programmatic interface for Figshare",
+        "description": "R package for accessing the geonames.org API",
         "topics": [
             "r",
             "rstats",
             "r-package",
-            "archiving",
-            "data",
-            "doi",
-            "repository",
-            "data-publication"
+            "geospatial"
         ]
     },
     {
-        "uid": "github/ropensci/rrricanesdata",
-        "url": "https://github.com/ropensci/rrricanesdata",
-        "rel": "/software/repository/github/ropensci/rrricanesdata",
+        "uid": "github/ropensci/tidyhydat",
+        "url": "https://github.com/ropensci/tidyhydat",
+        "rel": "/software/repository/github/ropensci/tidyhydat",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Supporting dataset for R package rrricanes",
+        "description": "An R package to import Water Survey of Canada hydrometric data and make it tidy",
         "topics": [
             "r",
-            "weather",
+            "tidy-data",
+            "government-data",
+            "water-resources",
             "rstats",
             "r-package",
+            "hydrology",
+            "hydrometrics",
+            "citz",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/taxizedb",
-        "url": "https://github.com/ropensci/taxizedb",
-        "rel": "/software/repository/github/ropensci/taxizedb",
+        "uid": "github/ropensci/opencontext",
+        "url": "https://github.com/ropensci/opencontext",
+        "rel": "/software/repository/github/ropensci/opencontext",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Tools for Working with Taxonomic SQL Databases",
+        "description": "API Client for the Open Context Archeological Database",
         "topics": [
-            "taxonomy",
-            "taxonomic-databases",
-            "itis",
-            "rstats",
-            "taxize",
             "r",
-            "r-package"
-        ]
-    },
-    {
-        "uid": "github/ropensci/rgbif",
-        "url": "https://github.com/ropensci/rgbif",
-        "rel": "/software/repository/github/ropensci/rgbif",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Interface to the Global Biodiversity Information Facility API",
-        "topics": [
-            "gbif",
-            "api",
-            "data",
-            "biodiversity",
-            "species",
             "rstats",
-            "r",
-            "spocc",
             "r-package",
-            "lifewatch",
-            "oscibio",
-            "API",
-            "GBIF",
-            "occurrences",
-            "specimens",
-            "taxonomy",
-            "web-services",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/wateRinfo",
-        "url": "https://github.com/ropensci/wateRinfo",
-        "rel": "/software/repository/github/ropensci/wateRinfo",
+        "uid": "github/ropensci/robotstxt",
+        "url": "https://github.com/ropensci/robotstxt",
+        "rel": "/software/repository/github/ropensci/robotstxt",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "R package to download time series data from waterinfo.be",
+        "description": "robots.txt file parsing and checking for R",
         "topics": [
+            "robotstxt",
+            "crawler",
+            "webscraping",
+            "spider",
+            "scraper",
             "r",
-            "package",
-            "api",
-            "ropensci",
-            "open-science",
-            "water",
-            "weather",
-            "climate",
-            "r-package",
-            "rstats",
-            "lifewatch",
-            "oscibio",
-            "data-access"
-        ]
-    },
-    {
-        "uid": "github/ropensci/opencage",
-        "url": "https://github.com/ropensci/opencage",
-        "rel": "/software/repository/github/ropensci/opencage",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": ":globe_with_meridians: R package for the OpenCage API -- both forward and reverse geocoding :globe_with_meridians:",
-        "topics": [
             "rstats",
-            "rspatial",
-            "geocode",
-            "opencage-geocoder",
-            "r",
-            "opencage-api",
-            "opencage",
-            "geocoder",
-            "placenames",
             "r-package",
             "peer-reviewed",
-            "geospatial"
-        ]
-    },
-    {
-        "uid": "github/ropensci/rromeo",
-        "url": "https://github.com/ropensci/rromeo",
-        "rel": "/software/repository/github/ropensci/rromeo",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": ":package: An R client for SHERPA/RoMEO API",
-        "topics": [
-            "r",
-            "r-package",
-            "rstats",
-            "sherpa-romeo",
-            "api-client",
-            "literature"
+            "http-tools"
         ]
     },
     {
-        "uid": "github/ropensci/suppdata",
-        "url": "https://github.com/ropensci/suppdata",
-        "rel": "/software/repository/github/ropensci/suppdata",
+        "uid": "github/ropensci/patentsview",
+        "url": "https://github.com/ropensci/patentsview",
+        "rel": "/software/repository/github/ropensci/patentsview",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Grabbing SUPPlementary DATA in R",
+        "description": "An R client to the PatentsView API",
         "topics": [
+            "patents",
+            "uspto",
+            "patentsview-api",
             "r",
             "rstats",
+            "patentsview",
             "r-package",
             "peer-reviewed",
-            "data-access"
+            "literature"
         ]
     },
     {
-        "uid": "github/ropensci/GSODR",
-        "url": "https://github.com/ropensci/GSODR",
-        "rel": "/software/repository/github/ropensci/GSODR",
+        "uid": "github/ropensci/treebase",
+        "url": "https://github.com/ropensci/treebase",
+        "rel": "/software/repository/github/ropensci/treebase",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "API Client for Global Surface Summary of the Day ('GSOD') Weather Data Client in R",
+        "description": "An R interface to the treeBASE API (now on CRAN)",
         "topics": [
             "r",
-            "weather-data",
-            "gsod",
-            "ncdc",
-            "weather-stations",
-            "global-data",
-            "data-access",
-            "ncei",
-            "weather",
-            "weather-information",
-            "historical-weather",
-            "historical-data",
-            "daily-data",
-            "daily-weather",
             "rstats",
             "r-package",
-            "global-weather",
-            "meteorological-data",
-            "meteorology",
-            "station-data",
-            "surface-weather",
-            "US-NCDC",
-            "US-NCEI"
+            "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/phylotaR",
-        "url": "https://github.com/ropensci/phylotaR",
-        "rel": "/software/repository/github/ropensci/phylotaR",
+        "uid": "github/ropensci/qualtRics",
+        "url": "https://github.com/ropensci/qualtRics",
+        "rel": "/software/repository/github/ropensci/qualtRics",
         "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "An automated pipeline for retrieving orthologous DNA sequences from GenBank in R",
+        "description": "Download \u2b07\ufe0f Qualtrics survey data directly into R!",
         "topics": [
-            "sequence-alignment",
-            "blastn",
-            "phylogenetics",
+            "qualtrics",
+            "qualtrics-api",
+            "survey",
             "r",
-            "genbank",
-            "peer-reviewed",
             "r-package",
-            "rstats",
-            "data-access"
-        ]
-    },
-    {
-        "uid": "github/ropensci/exoplanets",
-        "url": "https://github.com/ropensci/exoplanets",
-        "rel": "/software/repository/github/ropensci/exoplanets",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": ":earth_americas: Provides access to NASA's Exoplanet Archive",
-        "topics": [
-            "rstats",
-            "nasa",
-            "exoplanets",
             "api",
+            "rstats",
+            "survey-data",
             "data-access"
         ]
     },
     {
-        "uid": "github/ropensci/spelling",
-        "url": "https://github.com/ropensci/spelling",
-        "rel": "/software/repository/github/ropensci/spelling",
-        "avatar": "https://avatars.githubusercontent.com/u/1200269?v=4",
-        "description": "Tools for Spell Checking in R",
+        "uid": "github/ropensci/drake",
+        "url": "https://github.com/ropensci/drake",
+        "rel": "/software/repository/github/ropensci/drake",
+        "avatar": "https://avatars3.githubusercontent.com/u/1200269?v=4",
+        "description": "An R-focused pipeline toolkit for reproducibility and high-performance computing",
         "topics": [
-            "spell-check",
-            "spell-checker",
+            "reproducibility",
+            "high-performance-computing",
             "r",
+            "data-science",
+            "drake",
+            "makefile",
+            "pipeline",
+            "workflow",
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-        "url": "https://github.com/ropensci/rglobi",
-        "rel": "/software/repository/github/ropensci/rglobi",
+        "uid": "github/ropensci/rgpdd",
+        "url": "https://github.com/ropensci/rgpdd",
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-        "description": "R library to access species interaction data of http://globalbioticinteractions.org",
+        "description": "Interface to the Global Population Dynamics Database, http://www3.imperial.ac.uk/cpb/databases/gpdd",
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             "rstats",
@@ -22311,4575 +22415,3355 @@
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-            "geospatial",
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-        "uid": "github/ropensci/tinkr",
-        "url": "https://github.com/ropensci/tinkr",
-        "rel": "/software/repository/github/ropensci/tinkr",
+        "uid": "github/ropensci/beautier",
+        "url": "https://github.com/ropensci/beautier",
+        "rel": "/software/repository/github/ropensci/beautier",
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-        "description": "Convert (R)Markdown files to XML, edit them, write them back as (R)Markdown",
+        "description": "R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2",
         "topics": [
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             "r-package",
             "rstats",
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-            "drug-repurposing",
-            "open-science",
-            "python",
-            "science-reproducibility"
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-        "description": "Deep Insight And Neural Network Analysis",
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+        "url": "https://github.com/smsharma/mining-for-substructure-lens",
+        "rel": "/software/repository/github/smsharma/mining-for-substructure-lens",
+        "avatar": "https://avatars.githubusercontent.com/u/6607936?v=4",
+        "description": "Inference of substructure properties in strong lensing systems with machine learning. Code repository associated with https://arxiv.org/abs/1909.02005.",
         "topics": [
-            "b-nmr",
-            "b-nqr",
-            "triumf"
+            "gravitational-lensing",
+            "machine-learning"
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     {
-        "uid": "github/MesserLab/SLiM",
-        "url": "https://github.com/MesserLab/SLiM",
-        "rel": "/software/repository/github/MesserLab/SLiM",
-        "avatar": "https://avatars.githubusercontent.com/u/10171238?v=4",
-        "description": "SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology.  It is highly flexible, with a built-in scripting language, and has a cross-platform graphical modeling environment called SLiMgui.",
+        "uid": "github/smsharma/dark-photons-perturbations",
+        "url": "https://github.com/smsharma/dark-photons-perturbations",
+        "rel": "/software/repository/github/smsharma/dark-photons-perturbations",
+        "avatar": "https://avatars.githubusercontent.com/u/6607936?v=4",
+        "description": "Dark photon conversions in our inhomogeneous Universe. Code repository associated with the papers https://arxiv.org/abs/2002.05165 and https://arxiv.org/abs/2004.06733.",
         "topics": [
-            "slim"
+            "dark-photons",
+            "dark-matter",
+            "perturbations",
+            "physics",
+            "particle-physics",
+            "cosmology"
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     {
-        "uid": "github/cholla-hydro/cholla",
-        "url": "https://github.com/cholla-hydro/cholla",
-        "rel": "/software/repository/github/cholla-hydro/cholla",
-        "avatar": "https://avatars.githubusercontent.com/u/18468918?v=4",
-        "description": "A GPU-based hydro code",
+        "uid": "github/smsharma/fermi-gce-flows",
+        "url": "https://github.com/smsharma/fermi-gce-flows",
+        "rel": "/software/repository/github/smsharma/fermi-gce-flows",
+        "avatar": "https://avatars.githubusercontent.com/u/6607936?v=4",
+        "description": "Simulation-based inference for the Galactic Center gamma-ray excess. Code repository associated with https://arxiv.org/abs/2110.06931.",
         "topics": []
     },
     {
-        "uid": "github/PfizerRD/sit2standpy",
-        "url": "https://github.com/PfizerRD/sit2standpy",
-        "rel": "/software/repository/github/PfizerRD/sit2standpy",
-        "avatar": "https://avatars1.githubusercontent.com/u/19213564?v=4",
-        "description": "Python based module framework for detecting sit-to-stand transitions",
+        "uid": "github/nimble-dev/nimbleHMC",
+        "url": "https://github.com/nimble-dev/nimbleHMC",
+        "rel": "/software/repository/github/nimble-dev/nimbleHMC",
+        "avatar": "https://avatars.githubusercontent.com/u/7871767?v=4",
+        "description": "HMC and other derivative-based MCMC sampling algorithms for the nimble package",
         "topics": []
     },
     {
-        "uid": "github/MRChemSoft/mrchem",
-        "url": "https://github.com/MRChemSoft/mrchem",
-        "rel": "/software/repository/github/MRChemSoft/mrchem",
-        "avatar": "https://avatars.githubusercontent.com/u/16899707?v=4",
-        "description": "MultiResolution Chemistry",
+        "uid": "github/elizabethnewman/hessQuik",
+        "url": "https://github.com/elizabethnewman/hessQuik",
+        "rel": "/software/repository/github/elizabethnewman/hessQuik",
+        "avatar": "https://avatars.githubusercontent.com/u/39045034?v=4",
+        "description": "Computing gradients and Hessians of feed-forward networks with GPU acceleration",
         "topics": [
-            "multiwavelets",
-            "computational-chemistry",
-            "chemistry",
-            "physics",
-            "c-plus-plus",
-            "python",
-            "density-functional-theory"
+            "neural-network",
+            "derivatives",
+            "gpu-acceleration"
         ]
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     {
-        "uid": "github/FunctionalUrology/MLcps",
-        "url": "https://github.com/FunctionalUrology/MLcps",
-        "rel": "/software/repository/github/FunctionalUrology/MLcps",
-        "avatar": "https://avatars.githubusercontent.com/u/99481262?v=4",
-        "description": null,
+        "uid": "github/climate-machine/Oceananigans.jl",
+        "url": "https://github.com/CliMA/Oceananigans.jl",
+        "rel": "/software/repository/github/climate-machine/Oceananigans.jl",
+        "avatar": "https://avatars0.githubusercontent.com/u/43161188?v=4",
+        "description": "\ud83c\udf0a Fast and friendly fluid dynamics on CPUs and GPUs",
+        "topics": [
+            "climate",
+            "ocean",
+            "fluid-dynamics",
+            "julia",
+            "gpu",
+            "climate-change"
+        ]
+    },
+    {
+        "uid": "github/scrook/neuroml-db",
+        "url": "https://github.com/scrook/neuroml-db",
+        "rel": "/software/repository/github/scrook/neuroml-db",
+        "avatar": "https://avatars.githubusercontent.com/u/2678602?v=4",
+        "description": "database of neuroml models",
         "topics": []
     },
     {
-        "uid": "github/UrbanRuralSystems/ur-scape",
-        "url": "https://github.com/UrbanRuralSystems/ur-scape",
-        "rel": "/software/repository/github/UrbanRuralSystems/ur-scape",
-        "avatar": "https://avatars.githubusercontent.com/u/40052507?v=4",
-        "description": null,
+        "uid": "github/RTIP/artip",
+        "url": "https://github.com/RTIP/artip",
+        "rel": "/software/repository/github/RTIP/artip",
+        "avatar": "https://avatars.githubusercontent.com/u/34025575?v=4",
+        "description": "Automated Radio Telescope Imaging Pipeline",
+        "topics": [
+            "radio-astronomy",
+            "measurement-set",
+            "casa",
+            "pipeline",
+            "python",
+            "gmrt",
+            "radio-telescopes",
+            "automated"
+        ]
+    },
+    {
+        "uid": "github/PynPoint/PynPoint",
+        "url": "https://github.com/PynPoint/PynPoint",
+        "rel": "/software/repository/github/PynPoint/PynPoint",
+        "avatar": "https://avatars.githubusercontent.com/u/37398986?v=4",
+        "description": "Pipeline for processing and analysis of high-contrast imaging data",
         "topics": []
     },
     {
-        "uid": "github/ekiefl/pooltool",
-        "url": "https://github.com/ekiefl/pooltool",
-        "rel": "/software/repository/github/ekiefl/pooltool",
-        "avatar": "https://avatars.githubusercontent.com/u/8688665?v=4",
-        "description": "A sandbox billiards game that emphasizes realistic physics",
+        "uid": "github/xoopR/set6",
+        "url": "https://github.com/xoopR/set6",
+        "rel": "/software/repository/github/xoopR/set6",
+        "avatar": "https://avatars2.githubusercontent.com/u/62353263?v=4",
+        "description": "R6 object-oriented interface for mathematical sets.",
+        "topics": [
+            "r",
+            "sets",
+            "oop",
+            "r6",
+            "intervals"
+        ]
+    },
+    {
+        "uid": "github/SuperKogito/spafe",
+        "url": "https://github.com/SuperKogito/spafe",
+        "rel": "/software/repository/github/SuperKogito/spafe",
+        "avatar": "https://avatars.githubusercontent.com/u/15731839?v=4",
+        "description": ":sound: spafe: Simplified Python Audio Features Extraction",
         "topics": [
-            "billiards",
-            "panda3d",
-            "physics",
-            "pool",
             "python",
-            "snooker",
-            "simulation",
-            "eight-ball"
+            "dsp",
+            "audio",
+            "music",
+            "audio-analysis",
+            "music-information-retrieval",
+            "features-extraction",
+            "mfcc",
+            "filterbank",
+            "signal-processing",
+            "frequency",
+            "frequency-analysis",
+            "time-frequency-analysis",
+            "frequencies",
+            "voice",
+            "sound",
+            "beat",
+            "pitch",
+            "speech-processing",
+            "gammatone-filterbanks"
         ]
     },
     {
-        "uid": "github/SYalouz/QuantNBody",
-        "url": "https://github.com/SYalouz/QuantNBody",
-        "rel": "/software/repository/github/SYalouz/QuantNBody",
-        "avatar": "https://avatars.githubusercontent.com/u/52918633?v=4",
-        "description": "QuantNBody : a python package for quantum chemistry/physics to manipulate many-body operators and wave functions.",
+        "uid": "github/bokunoBike/m6AGE",
+        "url": "https://github.com/bokunoBike/m6AGE",
+        "rel": "/software/repository/github/bokunoBike/m6AGE",
+        "avatar": "https://avatars.githubusercontent.com/u/31384108?v=4",
+        "description": "A predictor for m6A sites.",
         "topics": []
     },
     {
-        "uid": "github/mirapy-org/mirapy",
-        "url": "https://github.com/mirapy-org/mirapy",
-        "rel": "/software/repository/github/mirapy-org/mirapy",
-        "avatar": "https://avatars.githubusercontent.com/u/49879504?v=4",
-        "description": "MiraPy: A Python package for Deep Learning in Astronomy",
-        "topics": [
-            "deep-learning",
-            "astronomy",
-            "keras",
-            "machine-learning",
-            "classification",
-            "autoencoder",
-            "curve-fitting",
-            "ogle",
-            "htru1",
-            "x-ray-binaries",
-            "image-reconstruction",
-            "variable-stars"
-        ]
+        "uid": "github/mlysy/LocalCop",
+        "url": "https://github.com/mlysy/LocalCop",
+        "rel": "/software/repository/github/mlysy/LocalCop",
+        "avatar": "https://avatars.githubusercontent.com/u/10173557?v=4",
+        "description": "Local Likelihood Inference for Conditional Copulas",
+        "topics": []
     },
     {
-        "uid": "github/ckay314/OSPREI",
-        "url": "https://github.com/ckay314/OSPREI",
-        "rel": "/software/repository/github/ckay314/OSPREI",
-        "avatar": "https://avatars.githubusercontent.com/u/32773545?v=4",
-        "description": "Fully coupled system of ForeCAT-based models",
+        "uid": "github/coljac/sensie",
+        "url": "https://github.com/coljac/sensie",
+        "rel": "/software/repository/github/coljac/sensie",
+        "avatar": "https://avatars3.githubusercontent.com/u/191407?v=4",
+        "description": "Toolset for probing the sensitivity of a deep neural network model to various properties of the data.",
         "topics": []
     },
     {
-        "uid": "github/elliohow/fMRI_ROI_Analysis_Tool",
-        "url": "https://github.com/elliohow/fMRI_ROI_Analysis_Tool",
-        "rel": "/software/repository/github/elliohow/fMRI_ROI_Analysis_Tool",
-        "avatar": "https://avatars.githubusercontent.com/u/47447365?v=4",
-        "description": "An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.",
+        "uid": "github/ideasrule/platon",
+        "url": "https://github.com/ideasrule/platon",
+        "rel": "/software/repository/github/ideasrule/platon",
+        "avatar": "https://avatars.githubusercontent.com/u/1724065?v=4",
+        "description": "Fast exoplanet transmission spectrum calculator",
+        "topics": []
+    },
+    {
+        "uid": "github/sing-group/my-brain-seq",
+        "url": "https://github.com/sing-group/my-brain-seq",
+        "rel": "/software/repository/github/sing-group/my-brain-seq",
+        "avatar": "https://avatars.githubusercontent.com/u/12700493?v=4",
+        "description": "myBrain-Seq: a Compi pipeline for miRNA-Seq data analysis in neuropsychiatry",
         "topics": [
-            "fmri",
-            "fmri-preprocessing",
-            "python",
-            "neuroimaging",
-            "brain-imaging",
-            "fmri-roi-analysis"
+            "differential-expression",
+            "docker",
+            "mirna",
+            "mirna-seq",
+            "compi",
+            "pipeline"
         ]
     },
     {
-        "uid": "github/opnavlab/sonic",
-        "url": "https://github.com/opnavlab/sonic",
-        "rel": "/software/repository/github/opnavlab/sonic",
-        "avatar": "https://avatars.githubusercontent.com/u/166256530?v=4",
-        "description": "SONIC is an object-oriented optical navigation (OPNAV) toolkit written in MATLAB.",
+        "uid": "github/sing-group/seda",
+        "url": "https://github.com/sing-group/seda",
+        "rel": "/software/repository/github/sing-group/seda",
+        "avatar": "https://avatars.githubusercontent.com/u/12700493?v=4",
+        "description": "SEquence DAtaset builder",
         "topics": [
-            "camera-calibration",
-            "opnav",
-            "projective-geometry",
-            "triangulation",
-            "astrometry"
+            "sequences",
+            "fasta",
+            "fasta-sequences",
+            "bioinformatics",
+            "java",
+            "sequence-dataset-builder"
         ]
     },
     {
-        "uid": "github/archaeo-pteryx/PowerSpecCovFFT",
-        "url": "https://github.com/archaeo-pteryx/PowerSpecCovFFT",
-        "rel": "/software/repository/github/archaeo-pteryx/PowerSpecCovFFT",
-        "avatar": "https://avatars.githubusercontent.com/u/16079514?v=4",
-        "description": "FFTLog-based computation of non-Gaussian analytic covariance of galaxy power spectrum multipoles ",
+        "uid": "github/shihyuntang/igrins_rv",
+        "url": "https://github.com/shihyuntang/igrins_rv",
+        "rel": "/software/repository/github/shihyuntang/igrins_rv",
+        "avatar": "https://avatars.githubusercontent.com/u/26864783?v=4",
+        "description": "Welcome to IGRINS RV, a open source pipeline for extracting radial velocity (RV) for the Immersion GRating INfrared Spectrometer (IGRINS) instrument. Please contact asa.stahl@rice.edu or sytang@lowell.edu for more detail.",
         "topics": []
     },
     {
-        "uid": "github/dtanoglidis/DeepShadows",
-        "url": "https://github.com/dtanoglidis/DeepShadows",
-        "rel": "/software/repository/github/dtanoglidis/DeepShadows",
-        "avatar": "https://avatars.githubusercontent.com/u/26015096?v=4",
-        "description": "Repository for the project \"DeepShadows: Separating LSBGs from artifacts using Deep Learning\"",
-        "topics": [
-            "deep-learning",
-            "galaxies"
-        ]
+        "uid": "github/vanheeringen-lab/gimmemotifs",
+        "url": "https://github.com/vanheeringen-lab/gimmemotifs",
+        "rel": "/software/repository/github/vanheeringen-lab/gimmemotifs",
+        "avatar": "https://avatars.githubusercontent.com/u/42635190?v=4",
+        "description": "Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments.  See full GimmeMotifs documentation for detailed installation instructions and usage examples.",
+        "topics": []
     },
     {
-        "uid": "github/nu-radio/NuRadioMC",
-        "url": "https://github.com/nu-radio/NuRadioMC",
-        "rel": "/software/repository/github/nu-radio/NuRadioMC",
-        "avatar": "https://avatars.githubusercontent.com/u/40645116?v=4",
-        "description": "A Monte Carlo simulation package for radio neutrino detectors",
-        "topics": [
-            "simulation",
-            "neutrino",
-            "radio"
-        ]
+        "uid": "github/Ramialison-Lab-ARMI/3DCardiomics",
+        "url": "https://github.com/Ramialison-Lab-ARMI/3DCardiomics",
+        "rel": "/software/repository/github/Ramialison-Lab-ARMI/3DCardiomics",
+        "avatar": "https://avatars2.githubusercontent.com/u/11384379?v=4",
+        "description": "A visual system for the exploration of cardiac transcriptome data",
+        "topics": []
     },
     {
-        "uid": "github/Kaixhin/spinning-up-basic",
-        "url": "https://github.com/Kaixhin/spinning-up-basic",
-        "rel": "/software/repository/github/Kaixhin/spinning-up-basic",
-        "avatar": "https://avatars.githubusercontent.com/u/991891?v=4",
-        "description": "Basic versions of agents from Spinning Up in Deep RL written in PyTorch",
-        "topics": [
-            "deep-learning",
-            "deep-reinforcement-learning"
-        ]
+        "uid": "github/gururajw/superlite",
+        "url": "https://github.com/gururajw/superlite",
+        "rel": "/software/repository/github/gururajw/superlite",
+        "avatar": "https://avatars.githubusercontent.com/u/33475990?v=4",
+        "description": "SuperLite: IMC-DDMC Radiation Transport Code for Interacting Transients",
+        "topics": []
     },
     {
-        "uid": "github/Kaixhin/dockerfiles",
-        "url": "https://github.com/Kaixhin/dockerfiles",
-        "rel": "/software/repository/github/Kaixhin/dockerfiles",
-        "avatar": "https://avatars.githubusercontent.com/u/991891?v=4",
-        "description": "Compilation of Dockerfiles with automated builds enabled on the Docker Registry",
+        "uid": "github/pmelsted/pizzly",
+        "url": "https://github.com/pmelsted/pizzly",
+        "rel": "/software/repository/github/pmelsted/pizzly",
+        "avatar": "https://avatars.githubusercontent.com/u/1830628?v=4",
+        "description": "Fast fusion detection using kallisto",
+        "topics": []
+    },
+    {
+        "uid": "github/carpyncho/carpyncho-py",
+        "url": "https://github.com/carpyncho/carpyncho-py",
+        "rel": "/software/repository/github/carpyncho/carpyncho-py",
+        "avatar": "https://avatars.githubusercontent.com/u/13108515?v=4",
+        "description": "Carpyncho client for python",
         "topics": [
-            "docker",
-            "dockerfiles",
-            "machine-learning",
-            "cuda",
-            "vnc",
-            "deep-learning"
+            "vvv",
+            "astronomy",
+            "catalog",
+            "lightcurves"
         ]
     },
     {
-        "uid": "github/Kaixhin/Atari",
-        "url": "https://github.com/Kaixhin/Atari",
-        "rel": "/software/repository/github/Kaixhin/Atari",
-        "avatar": "https://avatars.githubusercontent.com/u/991891?v=4",
-        "description": "Persistent advantage learning dueling double DQN for the Arcade Learning Environment",
+        "uid": "github/stan-dev/stan",
+        "url": "https://github.com/stan-dev/stan",
+        "rel": "/software/repository/github/stan-dev/stan",
+        "avatar": "https://avatars2.githubusercontent.com/u/3374820?v=4",
+        "description": "Stan development repository. The master branch contains the current release. The develop branch contains the latest stable development.  See the Developer Process Wiki for details.  ",
         "topics": [
-            "deep-reinforcement-learning",
-            "deep-learning"
+            "stan",
+            "bayesian-inference",
+            "bayesian",
+            "bayesian-methods",
+            "bayesian-statistics",
+            "bayesian-data-analysis"
         ]
     },
     {
-        "uid": "github/Kaixhin/Rainbow",
-        "url": "https://github.com/Kaixhin/Rainbow",
-        "rel": "/software/repository/github/Kaixhin/Rainbow",
-        "avatar": "https://avatars.githubusercontent.com/u/991891?v=4",
-        "description": "Rainbow: Combining Improvements in Deep Reinforcement Learning",
+        "uid": "github/gdrouart/MrMoose",
+        "url": "https://github.com/gdrouart/MrMoose",
+        "rel": "/software/repository/github/gdrouart/MrMoose",
+        "avatar": "https://avatars.githubusercontent.com/u/22902215?v=4",
+        "description": "MrMoose  is a Spectral Energy Distribution fitting procedure  using a Bayesian framework. In a nutshell, this code allows to fit user-defined models onto a set of multi-wavelength data, making use of spatial information and upper-limits with a consistent treatment. The code is highly flexible to allow its use for sources with complex structures.",
         "topics": [
-            "deep-learning",
-            "deep-reinforcement-learning"
+            "fitting",
+            "astronomy",
+            "statistics"
         ]
     },
     {
-        "uid": "github/Kaixhin/Autoencoders",
-        "url": "https://github.com/Kaixhin/Autoencoders",
-        "rel": "/software/repository/github/Kaixhin/Autoencoders",
-        "avatar": "https://avatars.githubusercontent.com/u/991891?v=4",
-        "description": "Torch implementations of various types of autoencoders",
+        "uid": "github/MesquiteProject/MesquiteCore",
+        "url": "https://github.com/MesquiteProject/MesquiteCore",
+        "rel": "/software/repository/github/MesquiteProject/MesquiteCore",
+        "avatar": "https://avatars.githubusercontent.com/u/6061432?v=4",
+        "description": "The core Mesquite repository",
+        "topics": []
+    },
+    {
+        "uid": "github/nkallima/sim-universal-construction",
+        "url": "https://github.com/nkallima/sim-universal-construction",
+        "rel": "/software/repository/github/nkallima/sim-universal-construction",
+        "avatar": "https://avatars.githubusercontent.com/u/4153902?v=4",
+        "description": "An open-source framework for concurrent data-structures and benchmarks. ",
         "topics": [
-            "autoencoder",
-            "deep-learning"
+            "concurrency",
+            "concurrent-programming",
+            "parallel-programming",
+            "pthreads",
+            "cc-synch",
+            "psim",
+            "osci",
+            "benchmarks",
+            "concurrent-queues",
+            "concurrent-stacks",
+            "performance-overheads",
+            "performance-impact",
+            "machine-architectures",
+            "queue-locks"
         ]
     },
     {
-        "uid": "github/Kaixhin/FGLab",
-        "url": "https://github.com/Kaixhin/FGLab",
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-        "avatar": "https://avatars.githubusercontent.com/u/991891?v=4",
-        "description": "Future Gadget Laboratory",
+        "uid": "github/SPARC-FAIR-Codeathon/aqua",
+        "url": "https://github.com/SPARC-FAIR-Codeathon/aqua",
+        "rel": "/software/repository/github/SPARC-FAIR-Codeathon/aqua",
+        "avatar": "https://avatars.githubusercontent.com/u/86933347?v=4",
+        "description": "Advanced Query Architecture for the SPARC Portal.",
         "topics": [
+            "nlp",
+            "search-engine",
             "machine-learning",
-            "reproducible-research",
-            "reproducible-science"
+            "hackathon",
+            "scigraph",
+            "docker"
         ]
     },
     {
-        "uid": "github/Kaixhin/PlaNet",
-        "url": "https://github.com/Kaixhin/PlaNet",
-        "rel": "/software/repository/github/Kaixhin/PlaNet",
-        "avatar": "https://avatars.githubusercontent.com/u/991891?v=4",
-        "description": "Deep Planning Network: Control from pixels by latent planning with learned dynamics",
+        "uid": "github/kevin218/Eureka",
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         "topics": [
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         "topics": [
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+        "rel": "/software/repository/github/reedacartwright/ngila",
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+        "description": "Ngila is a global alignment program that can align pairs of sequences using   logarithmic and affine gap penalties.",
+        "topics": []
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-        "url": "https://github.com/Starlink/aspic",
-        "rel": "/software/repository/github/Starlink/aspic",
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-        "description": "Starlink Image processing programs from the 1980s",
-        "topics": [
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-            "fortran"
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+        "uid": "github/reedacartwright/dawg",
+        "url": "https://github.com/reedacartwright/dawg",
+        "rel": "/software/repository/github/reedacartwright/dawg",
+        "avatar": "https://avatars.githubusercontent.com/u/101918?v=4",
+        "description": "Simulating Sequence Evolution",
+        "topics": []
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-        "url": "https://github.com/Starlink/palpy",
-        "rel": "/software/repository/github/Starlink/palpy",
-        "avatar": "https://avatars.githubusercontent.com/u/2018671?v=4",
-        "description": "Python interface to the PAL positional astronomy library",
+        "uid": "github/RETURN-project/BenchmarkRecovery",
+        "url": "https://github.com/RETURN-project/BenchmarkRecovery",
+        "rel": "/software/repository/github/RETURN-project/BenchmarkRecovery",
+        "avatar": "https://avatars.githubusercontent.com/u/54841522?v=4",
+        "description": "Benchmarking recovery indicators from remote sensing time series",
+        "topics": []
+    },
+    {
+        "uid": "github/cistib/origami",
+        "url": "https://github.com/cistib/origami",
+        "rel": "/software/repository/github/cistib/origami",
+        "avatar": "https://avatars.githubusercontent.com/u/73349299?v=4",
+        "description": "MATLAB-based image analysis pipeline for extracting single-cell direction-variant shape features from fluorescence images of folding epithelial sheets.",
         "topics": [
-            "python",
-            "astronomy",
-            "wcs"
+            "matlab-code",
+            "microscopy",
+            "image-processing"
         ]
     },
     {
-        "uid": "github/Starlink/pal",
-        "url": "https://github.com/Starlink/pal",
-        "rel": "/software/repository/github/Starlink/pal",
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-        "description": "Positional Astronomy Library",
-        "topics": [
-            "astronomy",
-            "c",
-            "wcs"
-        ]
+        "uid": "github/nservant/HiC-Pro",
+        "url": "https://github.com/nservant/HiC-Pro",
+        "rel": "/software/repository/github/nservant/HiC-Pro",
+        "avatar": "https://avatars.githubusercontent.com/u/10778219?v=4",
+        "description": "HiC-Pro: An optimized and flexible pipeline for Hi-C data processing",
+        "topics": []
     },
     {
-        "uid": "github/Starlink/starlink",
-        "url": "https://github.com/Starlink/starlink",
-        "rel": "/software/repository/github/Starlink/starlink",
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-        "description": "Starlink Software Collection",
-        "topics": [
-            "astronomy"
-        ]
+        "uid": "github/aineniamh/snipit",
+        "url": "https://github.com/aineniamh/snipit",
+        "rel": "/software/repository/github/aineniamh/snipit",
+        "avatar": "https://avatars.githubusercontent.com/u/11678307?v=4",
+        "description": "snipit: summarise snps relative to your reference sequence",
+        "topics": []
     },
     {
-        "uid": "github/Starlink/starjava",
-        "url": "https://github.com/Starlink/starjava",
-        "rel": "/software/repository/github/Starlink/starjava",
-        "avatar": "https://avatars.githubusercontent.com/u/2018671?v=4",
-        "description": "Java applications initially developed for the Starlink Project but now developed independently",
+        "uid": "github/rickhelmus/patRoon",
+        "url": "https://github.com/rickhelmus/patRoon",
+        "rel": "/software/repository/github/rickhelmus/patRoon",
+        "avatar": "https://avatars.githubusercontent.com/u/37015911?v=4",
+        "description": "Workflow solutions for mass-spectrometry based non-target analysis.",
         "topics": [
-            "java",
-            "astronomy"
+            "mass-spectrometry",
+            "r",
+            "non-target"
         ]
     },
     {
-        "uid": "github/agerada/AIgarMIC",
-        "url": "https://github.com/agerada/AIgarMIC",
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-        "avatar": "https://avatars.githubusercontent.com/u/62601884?v=4",
-        "description": "AIgarMIC \u2013\u00a0machine-learning assisted agar dilution software",
+        "uid": "github/bareid/cosmoxi2d",
+        "url": "https://github.com/bareid/cosmoxi2d",
+        "rel": "/software/repository/github/bareid/cosmoxi2d",
+        "avatar": "https://avatars.githubusercontent.com/u/4365718?v=4",
+        "description": "Evaluates the theoretical prediction for correlation function multipoles based on perturbation theory evaluation of the input real space clustering and velocity statistics to the Gaussian streaming model.",
         "topics": []
     },
     {
-        "uid": "github/rafaeleufrasio/lightning",
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-        "avatar": "https://avatars.githubusercontent.com/u/15216531?v=4",
-        "description": "Lightning SED Fitting Package",
+        "uid": "github/scottleedavis/googleearthtoolbox",
+        "url": "https://github.com/scottleedavis/google-earth-toolbox",
+        "rel": "/software/repository/github/scottleedavis/googleearthtoolbox",
+        "avatar": "https://avatars0.githubusercontent.com/u/2914443?v=4",
+        "description": "Leverages the intuitive interactive virtual globe interface provided by Google Earth, providing programatic tools useful in spatio-temporal analysis.",
         "topics": []
     },
     {
-        "uid": "github/mcsiple/mmrefpoints",
-        "url": "https://github.com/mcsiple/mmrefpoints",
-        "rel": "/software/repository/github/mcsiple/mmrefpoints",
-        "avatar": "https://avatars.githubusercontent.com/u/2936426?v=4",
-        "description": "A package for simulating marine mammal abundance and calculating reference points.",
+        "uid": "github/bacpop/PopPUNK",
+        "url": "https://github.com/bacpop/PopPUNK",
+        "rel": "/software/repository/github/bacpop/PopPUNK",
+        "avatar": "https://avatars.githubusercontent.com/u/78856671?v=4",
+        "description": "PopPUNK \ud83d\udc68\u200d\ud83c\udfa4 (POPulation Partitioning Using Nucleotide Kmers)",
         "topics": [
-            "bycatch",
-            "fisheries-management",
-            "marine-mammals",
-            "r",
-            "shiny"
+            "bacteria",
+            "genomics",
+            "population-genetics",
+            "k-mer",
+            "sketching"
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     {
-        "uid": "github/gagneurlab/drop",
-        "url": "https://github.com/gagneurlab/drop",
-        "rel": "/software/repository/github/gagneurlab/drop",
-        "avatar": "https://avatars.githubusercontent.com/u/29893284?v=4",
-        "description": "(Detection of RNA Outlier Pipeline) pipeline to find aberrant gene expression events in RNA sequencing data.",
+        "uid": "github/bacpop/ska.rust",
+        "url": "https://github.com/bacpop/ska.rust",
+        "rel": "/software/repository/github/bacpop/ska.rust",
+        "avatar": "https://avatars.githubusercontent.com/u/78856671?v=4",
+        "description": "Split k-mer analysis \u2013 version 2",
         "topics": [
-            "pipeline",
-            "rna-seq",
-            "genetic-diagnosis"
+            "bioinformatics",
+            "sequence",
+            "ska",
+            "rust",
+            "alignment",
+            "k-mer"
         ]
     },
     {
-        "uid": "github/amkram/shusher",
-        "url": "https://github.com/amkram/shusher",
-        "rel": "/software/repository/github/amkram/shusher",
-        "avatar": "https://avatars.githubusercontent.com/u/6502785?v=4",
-        "description": "Private, browser-based placement of genome sequences on phylogenetic trees using UShER.",
+        "uid": "github/ishinder/EASTR",
+        "url": "https://github.com/ishinder/EASTR",
+        "rel": "/software/repository/github/ishinder/EASTR",
+        "avatar": "https://avatars.githubusercontent.com/u/32040472?v=4",
+        "description": "Emending Alignment of Spliced Transcript Reads",
         "topics": []
     },
     {
-        "uid": "github/vcftools/index.html",
-        "url": null,
-        "rel": "/software/repository/github/vcftools/index.html",
-        "avatar": "",
-        "description": "a program package designed to provide easily accessible methods for working with complex genetic variation data in the form of VCF files, such as those generated by the 1000 Genomes Project.",
-        "topics": []
+        "uid": "github/nci/scores",
+        "url": "https://github.com/nci/scores",
+        "rel": "/software/repository/github/nci/scores",
+        "avatar": "https://avatars.githubusercontent.com/u/18274870?v=4",
+        "description": "Metrics for the verification, evaluation and optimisation of forecasts, predictions or models.",
+        "topics": [
+            "dask",
+            "forecast-evaluation",
+            "forecast-verification",
+            "forecasting",
+            "model-validation",
+            "pandas",
+            "python",
+            "xarray",
+            "climate",
+            "oceanography",
+            "weather",
+            "verification",
+            "contingency-table"
+        ]
     },
     {
-        "uid": "github/jpober/21cmSense",
-        "url": "https://github.com/jpober/21cmSense",
-        "rel": "/software/repository/github/jpober/21cmSense",
-        "avatar": "https://avatars.githubusercontent.com/u/1482671?v=4",
-        "description": "Code for calculating the sensitivity of 21cm experiments to the EoR power spectrum",
-        "topics": []
+        "uid": "github/MedMaxLab/selfEEG",
+        "url": "https://github.com/MedMaxLab/selfEEG",
+        "rel": "/software/repository/github/MedMaxLab/selfEEG",
+        "avatar": "https://avatars.githubusercontent.com/u/119063619?v=4",
+        "description": "selfEEG: a Python library for Self-Supervised Learning on Electroencephalography (EEG) data",
+        "topics": [
+            "deep-learning",
+            "eeg",
+            "self-supervised-learning"
+        ]
     },
     {
-        "uid": "github/ExoSim/ExoSimPublic",
-        "url": "https://github.com/ExoSim/ExoSimPublic",
-        "rel": "/software/repository/github/ExoSim/ExoSimPublic",
-        "avatar": "https://avatars.githubusercontent.com/u/9990672?v=4",
-        "description": null,
+        "uid": "github/nebblu/ReACT",
+        "url": "https://github.com/nebblu/ReACT",
+        "rel": "/software/repository/github/nebblu/ReACT",
+        "avatar": "https://avatars.githubusercontent.com/u/45853389?v=4",
+        "description": "ReACT public repo",
         "topics": []
     },
     {
-        "uid": "github/refresh-bio/whisper",
-        "url": "https://github.com/refresh-bio/Whisper",
-        "rel": "/software/repository/github/refresh-bio/whisper",
-        "avatar": "https://avatars3.githubusercontent.com/u/16046310?v=4",
+        "uid": "github/Shamir-Lab/domino_web",
+        "url": "https://github.com/Shamir-Lab/domino_web",
+        "rel": "/software/repository/github/Shamir-Lab/domino_web",
+        "avatar": "https://avatars.githubusercontent.com/u/16764377?v=4",
         "description": null,
         "topics": []
     },
     {
-        "uid": "github/refresh-bio/agc",
-        "url": "https://github.com/refresh-bio/agc",
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-        "avatar": "https://avatars.githubusercontent.com/u/16046310?v=4",
-        "description": "Assembled Genomes Compressor",
+        "uid": "github/lnscan/mitoSplitter",
+        "url": "https://github.com/lnscan/mitoSplitter",
+        "rel": "/software/repository/github/lnscan/mitoSplitter",
+        "avatar": "https://avatars.githubusercontent.com/u/63651125?v=4",
+        "description": null,
         "topics": []
     },
     {
-        "uid": "github/splicebox/PsiCLASS",
-        "url": "https://github.com/splicebox/PsiCLASS",
-        "rel": "/software/repository/github/splicebox/PsiCLASS",
-        "avatar": "https://avatars.githubusercontent.com/u/39348708?v=4",
-        "description": "Simultaneous multi-sample transcript assembler for RNA-seq data",
+        "uid": "github/DMGW-Goethe/imripy",
+        "url": "https://github.com/DMGW-Goethe/imripy",
+        "rel": "/software/repository/github/DMGW-Goethe/imripy",
+        "avatar": "https://avatars.githubusercontent.com/u/93539226?v=4",
+        "description": "A python code able to simulate Intermediate Mass Ratio Inspirals (IMRI)",
         "topics": []
     },
     {
-        "uid": "github/PanKonstantinos/MEvA-X",
-        "url": "https://github.com/PanKonstantinos/MEvA-X",
-        "rel": "/software/repository/github/PanKonstantinos/MEvA-X",
-        "avatar": "https://avatars.githubusercontent.com/u/26748316?v=4",
-        "description": "Open source Biomarker discovery tool based on multi-objective Evolutionary algorithm and the XGBoost Classifier",
+        "uid": "github/davidharvey1986/pyRRG",
+        "url": "https://github.com/davidharvey1986/pyRRG",
+        "rel": "/software/repository/github/davidharvey1986/pyRRG",
+        "avatar": "https://avatars.githubusercontent.com/u/2930696?v=4",
+        "description": "pyRRG weak lensing shape measurement code. Measuring the 2nd and 4th order moments it uses a TinyTim model to correct for PSF distortions. It is invariant to number exposures, ortientation of the drizzle images. Using a machine learning algorithm it automatically star and galaxy classifies, howeve the user is able to do this manually if not accurate enough. For more see https://arxiv.org/abs/astro-ph/9905090. For bugs please report them to https://github.com/davidharvey1986/pyRRG or contact harvey@lorentz.leidenuniv.nl",
         "topics": []
     },
     {
-        "uid": "github/peikuan/WBBC",
-        "url": "https://github.com/peikuan/WBBC",
-        "rel": "/software/repository/github/peikuan/WBBC",
-        "avatar": "https://avatars.githubusercontent.com/u/103729199?v=4",
-        "description": "Westlake BioBank for Chinese pilot project",
-        "topics": []
+        "uid": "github/MrOlm/drep",
+        "url": "https://github.com/MrOlm/drep",
+        "rel": "/software/repository/github/MrOlm/drep",
+        "avatar": "https://avatars.githubusercontent.com/u/13424205?v=4",
+        "description": "a python program for rapidly comparing large numbers of genomes, dRep can also \"de-replicate\" a genome set by identifying groups of highly similar genomes and choosing the best representative genome for each genome set.",
+        "topics": [
+            "bioinformatics",
+            "metagenomics",
+            "microbiology",
+            "assembly",
+            "microbial-genomes"
+        ]
     },
     {
-        "uid": "github/CPM-project/MCPM",
-        "url": "https://github.com/CPM-project/MCPM",
-        "rel": "/software/repository/github/CPM-project/MCPM",
-        "avatar": "https://avatars.githubusercontent.com/u/32932681?v=4",
-        "description": "Modified CPM method",
+        "uid": "github/matthiasdemuzere/w2w",
+        "url": "https://github.com/matthiasdemuzere/w2w",
+        "rel": "/software/repository/github/matthiasdemuzere/w2w",
+        "avatar": "https://avatars.githubusercontent.com/u/6926916?v=4",
+        "description": "A python tool that ingests WUDAPT information into WRF.",
         "topics": []
     },
     {
-        "uid": "github/markheckmann/OpenRepGrid.ic",
-        "url": "https://github.com/markheckmann/OpenRepGrid.ic",
-        "rel": "/software/repository/github/markheckmann/OpenRepGrid.ic",
-        "avatar": "https://avatars.githubusercontent.com/u/152927?v=4",
-        "description": "shiny app for interpretive clustering of repgrids:",
-        "topics": [
-            "repgrid",
-            "clustering",
-            "repertory",
-            "grid",
-            "constructs",
-            "shiny"
-        ]
+        "uid": "github/JLBLine/PUMA",
+        "url": "https://github.com/JLBLine/PUMA",
+        "rel": "/software/repository/github/JLBLine/PUMA",
+        "avatar": "https://avatars.githubusercontent.com/u/7925164?v=4",
+        "description": null,
+        "topics": []
     },
     {
-        "uid": "github/JamesPaynter/PyGRB",
-        "url": "https://github.com/JamesPaynter/PyGRB",
-        "rel": "/software/repository/github/JamesPaynter/PyGRB",
-        "avatar": "https://avatars2.githubusercontent.com/u/45152710?v=4",
-        "description": "Gamma-ray burst analysis library",
-        "topics": [
-            "gamma-ray-burst",
-            "gamma-ray-astronomy",
-            "astrophysics"
-        ]
+        "uid": "github/JLBLine/WODEN",
+        "url": "https://github.com/JLBLine/WODEN",
+        "rel": "/software/repository/github/JLBLine/WODEN",
+        "avatar": "https://avatars.githubusercontent.com/u/7925164?v=4",
+        "description": "CUDA code designed to simulate interferometric data using point, Gaussian, and shapelet sky models",
+        "topics": []
     },
     {
-        "uid": "github/mzemp/halogen",
-        "url": "https://github.com/mzemp/halogen",
-        "rel": "/software/repository/github/mzemp/halogen",
-        "avatar": "https://avatars.githubusercontent.com/u/7420777?v=4",
-        "description": "Tool to generate spherically symmetric initial conditions for N-body simulations.",
+        "uid": "github/yair111/AnalyticLC",
+        "url": "https://github.com/yair111/AnalyticLC",
+        "rel": "/software/repository/github/yair111/AnalyticLC",
+        "avatar": "https://avatars.githubusercontent.com/u/93904333?v=4",
+        "description": null,
         "topics": []
     },
     {
-        "uid": "github/prajwel/curvit",
-        "url": "https://github.com/prajwel/curvit",
-        "rel": "/software/repository/github/prajwel/curvit",
-        "avatar": "https://avatars.githubusercontent.com/u/1685962?v=4",
-        "description": "Create light curves from UVIT data.",
-        "topics": [
-            "astronomy",
-            "uvit-data",
-            "ultraviolet",
-            "variability",
-            "python",
-            "science",
-            "lightcurves",
-            "astrosat",
-            "uvit",
-            "light-curves",
-            "instrument-coordinate"
-        ]
+        "uid": "github/fairtracks/omnipy_examples",
+        "url": "https://github.com/fairtracks/omnipy_examples",
+        "rel": "/software/repository/github/fairtracks/omnipy_examples",
+        "avatar": "https://avatars.githubusercontent.com/u/50033677?v=4",
+        "description": null,
+        "topics": []
     },
     {
-        "uid": "github/julianreul/mode_behave",
-        "url": "https://github.com/julianreul/mode_behave",
-        "rel": "/software/repository/github/julianreul/mode_behave",
-        "avatar": "https://avatars.githubusercontent.com/u/42872728?v=4",
-        "description": "A Python package for estimating mixed logit models with nonparametric distributions",
+        "uid": "github/mostanes/umbrella2",
+        "url": "https://github.com/mostanes/umbrella2",
+        "rel": "/software/repository/github/mostanes/umbrella2",
+        "avatar": "https://avatars.githubusercontent.com/u/26716644?v=4",
+        "description": "Highly modular open-source asteroid detection library written under dotnet.",
         "topics": []
     },
     {
-        "uid": "github/copasi/basico",
-        "url": "https://github.com/copasi/basico",
-        "rel": "/software/repository/github/copasi/basico",
-        "avatar": "https://avatars.githubusercontent.com/u/1854399?v=4",
-        "description": "A simplified python interface to COPASI.",
-        "topics": [
-            "python",
-            "copasi"
-        ]
+        "uid": "github/baiyueh/PANINIpy",
+        "url": "https://github.com/baiyueh/PANINIpy",
+        "rel": "/software/repository/github/baiyueh/PANINIpy",
+        "avatar": "https://avatars.githubusercontent.com/u/92152405?v=4",
+        "description": "PANINIpy: Package of Algorithms for Nonparametric Inference with Networks in Python",
+        "topics": []
     },
     {
-        "uid": "github/copasi/COPASI",
-        "url": "https://github.com/copasi/COPASI",
-        "rel": "/software/repository/github/copasi/COPASI",
-        "avatar": "https://avatars.githubusercontent.com/u/1854399?v=4",
-        "description": "COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.",
+        "uid": "github/AstroAccelerateOrg/astro-accelerate",
+        "url": "https://github.com/AstroAccelerateOrg/astro-accelerate",
+        "rel": "/software/repository/github/AstroAccelerateOrg/astro-accelerate",
+        "avatar": "https://avatars.githubusercontent.com/u/25104377?v=4",
+        "description": "AstroAccelerate is a many-core accelerated software package for processing time-domain radio-astronomy data.",
         "topics": [
-            "copasi",
-            "simulation",
-            "modeling",
-            "systems-biology",
-            "dynamics",
-            "chemistry",
-            "biochemistry",
-            "kinetics"
+            "gpu",
+            "cuda",
+            "radio-astronomy"
         ]
     },
     {
-        "uid": "github/maserlib/ExPRES",
-        "url": "https://github.com/maserlib/ExPRES",
-        "rel": "/software/repository/github/maserlib/ExPRES",
-        "avatar": "https://avatars.githubusercontent.com/u/22966577?v=4",
-        "description": "Exoplanetary and Planetary Radio Emission Simulator",
+        "uid": "github/grant-m-s/astronomicAL",
+        "url": "https://github.com/grant-m-s/AstronomicAL",
+        "rel": "/software/repository/github/grant-m-s/astronomicAL",
+        "avatar": "https://avatars.githubusercontent.com/u/12834844?v=4",
+        "description": "An interactive dashboard for visualisation, integration and classification of data using Active Learning.",
         "topics": [
-            "uws",
-            "idl",
-            "radio-astronomy",
-            "jupiter",
-            "padc"
+            "machine-learning",
+            "active-learning",
+            "astronomy",
+            "interactive",
+            "labelling",
+            "python",
+            "data-visualization"
         ]
     },
     {
-        "uid": "github/mkenworthy/exorings",
-        "url": "https://github.com/mkenworthy/exorings",
-        "rel": "/software/repository/github/mkenworthy/exorings",
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-        "description": ":earth_americas: Verification of weather and climate forecasts. :earth_africa:",
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-            "climate-analysis",
-            "prediction",
-            "xarray",
-            "dask",
-            "pangeo"
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-        "description": "Recipe to install and configure a GitHub action runner using Ansible",
-        "topics": [
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-            "github-actions"
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+        "uid": "github/justinmathias/isocalcR",
+        "url": "https://github.com/justinmathias/isocalcR",
+        "rel": "/software/repository/github/justinmathias/isocalcR",
+        "avatar": "https://avatars.githubusercontent.com/u/52084610?v=4",
+        "description": "R Package containing widely used isotope theory functions",
+        "topics": []
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-        "description": "A fast, flexible, automated, and differentiable astronomical image modelling tool for precise parallel multi-wavelength photometry",
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+        "avatar": "https://avatars.githubusercontent.com/u/17048750?v=4",
+        "description": "Anything can happen in the next half hour (including spectral timing made easy)!",
         "topics": [
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             "astronomy",
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-            "scrna-seq",
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+            "x-ray-binaries",
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-        "description": "muLAn: MICROlensing Analysis software",
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+        "description": "Fast Whole-Genome Similarity (ANI) Estimation",
         "topics": [
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-        "description": "A python tool for calculating the exclusion plot for Dark Matter interaction with the Standard Model in non-relativistic Effective Theory Models. ",
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-        "avatar": "https://avatars.githubusercontent.com/u/909509?v=4",
-        "description": "Allan deviation and related time & frequency statistics library in Python",
+        "uid": "github/refresh-bio/agc",
+        "url": "https://github.com/refresh-bio/agc",
+        "rel": "/software/repository/github/refresh-bio/agc",
+        "avatar": "https://avatars.githubusercontent.com/u/16046310?v=4",
+        "description": "Assembled Genomes Compressor",
         "topics": []
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     {
-        "uid": "github/dominic-chang/Krang.jl",
-        "url": "https://github.com/dominic-chang/Krang.jl",
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-        "avatar": "https://avatars.githubusercontent.com/u/12768908?v=4",
-        "description": "Fast analytic raytracing around Kerr black holes",
+        "uid": "github/CyclotronResearchCentre/bidsme",
+        "url": "https://github.com/CyclotronResearchCentre/bidsme",
+        "rel": "/software/repository/github/CyclotronResearchCentre/bidsme",
+        "avatar": "https://avatars.githubusercontent.com/u/2012195?v=4",
+        "description": "Flexible bidsificator for multimodal datasets",
         "topics": [
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-            "general-relativity",
-            "julia",
-            "kerr",
-            "raytracer",
-            "raytracing",
-            "automatic-differentiation",
-            "gpu-acceleration"
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+            "mri-data",
+            "dicom",
+            "nifti",
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-        "description": "A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets",
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+        "uid": "github/pyomeca/biorbd",
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+        "avatar": "https://avatars.githubusercontent.com/u/36738416?v=4",
+        "description": "Biomechanical add-ons to the RigidBody Dynamics Library",
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+        "uid": "github/pyomeca/biosiglive",
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-        "avatar": "https://avatars3.githubusercontent.com/u/54322843?v=4",
-        "description": "Provides tools for modeling photovoltaic water pumping system",
+        "uid": "github/pyomeca/ezc3d",
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+        "rel": "/software/repository/github/pyomeca/ezc3d",
+        "avatar": "https://avatars.githubusercontent.com/u/36738416?v=4",
+        "description": "Easy to use C3D reader/writer for C++, Python and Matlab",
         "topics": []
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-        "description": "A Python package to evolve hierarchical triples in the secular approximation",
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-        "description": "sequence element (kmer) enrichment analysis",
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         "topics": [
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+        "description": "Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.",
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-        "description": "PopPUNK \ud83d\udc68\u200d\ud83c\udfa4 (POPulation Partitioning Using Nucleotide Kmers)",
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+        "url": "https://github.com/riatelab/osrm",
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+        "description": "Shortest Paths and Travel Time from OpenStreetMap with R",
         "topics": [
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-            "genomics",
-            "population-genetics",
-            "k-mer",
-            "sketching"
+            "osrm",
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+            "openstreetmap",
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-        "description": "COSS: CompOmics Spectral Searching",
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+        "description": "RNA edit detection (SAILOR) and peak calling (FLARE)",
         "topics": []
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-        "description": "An algorithm to identify cross-linked peptides",
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+        "description": "A tool to detect CLIP-seq peaks.",
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-        "description": "DeepLC: Retention time prediction for (modified) peptides using Deep Learning.",
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+        "description": "Nexus Class Library ",
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-        "description": "Python framework for Agile ontology development support to be used with command lines with pre-commit or GitHub Actions",
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+        "rel": "/software/repository/github/BenNordick/HiLoop",
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+        "description": "Python Request Engine for Virtual Interferometric Survey",
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-            "plasmids",
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+            "astronomy",
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-        "description": "A machine learning based protein disorder predictor.",
+        "uid": "github/Someone789/galax2d",
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+        "avatar": "https://avatars.githubusercontent.com/u/11181246?v=4",
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         "topics": []
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     {
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-        "avatar": "https://avatars.githubusercontent.com/u/13206950?v=4",
-        "description": "A set of metabolomics tools for use in Galaxy",
+        "uid": "github/Nico-Curti/rFBP",
+        "url": "https://github.com/Nico-Curti/rFBP",
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+        "description": "Replicated Focusing Belief Propagation algorithm",
         "topics": [
-            "metabolomics",
-            "galaxy",
-            "secim",
-            "lasso",
-            "anova",
-            "random-forest",
-            "pca-analysis"
+            "belief-propagation",
+            "deep-neural-networks",
+            "spin-glass",
+            "statistical-mechanics",
+            "learning-algorithm",
+            "machine-learning-algorithms",
+            "python3",
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-        "url": "https://github.com/tessgi/tvguide",
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-        "description": "A tool for determining whether stars and galaxies are observable by TESS.",
+        "uid": "github/Xomics/ACTIONdemonstrator_workflow",
+        "url": "https://github.com/Xomics/ACTIONdemonstrator_workflow",
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+        "description": "X-omics ACTION demonstrator multi-omics analysis workflow",
         "topics": []
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     {
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-        "avatar": "https://avatars.githubusercontent.com/u/8246702?v=4",
-        "description": "A microservice for programmatic access to precomputed synthetic spectral model grids in astronomy",
+        "uid": "github/cdanielmachado/reframed",
+        "url": "https://github.com/cdanielmachado/reframed",
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+        "description": "ReFramed: metabolic modeling package",
         "topics": [
-            "astronomy",
-            "spectroscopy",
-            "science",
-            "astrophysics",
-            "stars",
-            "physics",
+            "metabolism",
+            "modeling",
             "python"
         ]
     },
     {
-        "uid": "github/OSeMOSYS/otoole",
-        "url": "https://github.com/OSeMOSYS/otoole",
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-        "description": "OSeMOSYS Tools for Energy",
+        "uid": "github/cdanielmachado/carveme",
+        "url": "https://github.com/cdanielmachado/carveme",
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+        "description": "CarveMe: genome-scale metabolic model reconstruction",
         "topics": [
-            "energy",
-            "osemosys",
-            "energy-system-modelling",
-            "energy-system"
+            "metabolism",
+            "modeling",
+            "python",
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+            "genome-scale"
         ]
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+        "description": "Histocompatibility analysis performed by kidney allocation systems for transplantation",
         "topics": []
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-        "description": "Brain Modeling Toolkit",
+        "uid": "github/zizroc/villager",
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+        "rel": "/software/repository/github/zizroc/villager",
+        "avatar": "https://avatars.githubusercontent.com/u/38635903?v=4",
+        "description": "villager is an extensible agent based modeling (ABM) framework for the R language. It supports agents, agent aggregations and their associated resources, as well as flexible data management.",
         "topics": [
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-            "modeling",
             "simulation",
-            "python",
-            "neural-networks",
-            "neuroinformatics",
-            "neuron"
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-        "description": "Next generation ODE translator",
+        "uid": "github/BioMedIA/MIRTK",
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+        "rel": "/software/repository/github/BioMedIA/MIRTK",
+        "avatar": "https://avatars.githubusercontent.com/u/7911500?v=4",
+        "description": "The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core libraries, and basic command-line tools. Extension packages are hosted by the MIRTK GitHub group at",
         "topics": [
-            "ode",
-            "parser",
-            "parsing",
-            "gotran",
-            "code-generation"
+            "image-processing",
+            "image-registration",
+            "medical-imaging",
+            "toolkit",
+            "free-form-deformation",
+            "ffd"
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-        "avatar": "https://avatars.githubusercontent.com/u/58597054?v=4",
-        "description": "Cluster relabeling based on impurity minimization",
+        "uid": "github/seamusclarke/rjplots",
+        "url": "https://github.com/SeamusClarke/RJplots",
+        "rel": "/software/repository/github/seamusclarke/rjplots",
+        "avatar": "https://avatars.githubusercontent.com/u/34774908?v=4",
+        "description": "A Python package allowing for the automated and objective classification of 2D structures using a moments of inertia based method. This method is a further development of J-plots (https://github.com/SJaffa/Jplots)",
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-        "description": "A Python toolbox for ArcGIS Pro  that enables the development and application of land use regression models.",
+        "uid": "github/thomasdenecker/START-R",
+        "url": "https://github.com/thomasdenecker/START-R",
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+        "avatar": "https://avatars2.githubusercontent.com/u/21334113?v=4",
+        "description": "Simple Tool for Analysis of Replication Timing with R",
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-        "description": "Enlsip.jl is the Julia version of a Fortran77 optimization library designed to solve nonlinear least squares problems under general nonlinear constraints.",
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-        "description": "Python/Cython module to find the centre of back-illuminated optical fibres in metrology images",
-        "topics": []
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+        "url": "https://github.com/curl/curl",
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+        "avatar": "https://avatars0.githubusercontent.com/u/16928085?v=4",
+        "description": "A command line tool and library for transferring data with URL syntax, supporting DICT, FILE, FTP, FTPS, GOPHER, GOPHERS, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, MQTT, POP3, POP3S, RTMP, RTMPS, RTSP, SCP, SFTP, SMB, SMBS, SMTP, SMTPS, TELNET and TFTP. libcurl offers a myriad of powerful features",
+        "topics": [
+            "http",
+            "https",
+            "ftp",
+            "user-agent",
+            "client",
+            "library",
+            "curl",
+            "libcurl",
+            "c",
+            "transfer-data",
+            "ldap",
+            "mqtt",
+            "sftp",
+            "scp"
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-        "description": "Transformer eXplainability and eXploration",
+        "uid": "github/metaOmics/MetaPath",
+        "url": "https://github.com/metaOmics/MetaPath",
+        "rel": "/software/repository/github/metaOmics/MetaPath",
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         "topics": []
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+        "url": "https://github.com/ebellm/pyraf-dbsp",
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+        "description": " :telescope: A PyRAF-based reduction pipeline for spectra taken with the Palomar 200-inch Double Spectrograph.",
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-        "description": "Open-source python package for multicomponent multiphase equilibrium CALPHAD calculations",
+        "uid": "github/dtanoglidis/DeepShadows",
+        "url": "https://github.com/dtanoglidis/DeepShadows",
+        "rel": "/software/repository/github/dtanoglidis/DeepShadows",
+        "avatar": "https://avatars.githubusercontent.com/u/26015096?v=4",
+        "description": "Repository for the project \"DeepShadows: Separating LSBGs from artifacts using Deep Learning\"",
         "topics": [
-            "calphad",
-            "python"
+            "deep-learning",
+            "galaxies"
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-        "description": "Simple DAOPHOT-type photometry in Python translated from IDL AstroLib photometry algorithms.  Please email me with bugs, suggestions, omissions, etc.  The code is citable as part of the Astrophysics Source Code Library (http://ascl.net/1501.010).",
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+        "avatar": "https://avatars.githubusercontent.com/u/24472234?v=4",
+        "description": "R-API to the multiphysics simulator OpenGeoSys 6.       THIS IS A MIRROR OF: https://gitlab.opengeosys.org/ogs/tools/r2ogs6",
+        "topics": [
+            "geoscience",
+            "hydrogeology",
+            "hydrology",
+            "multi-physics",
+            "opengeosys",
+            "porous-media-flow",
+            "r",
+            "transport-modelling"
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-        "description": "https://opimwue.github.io/ddop/.",
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+        "url": "https://github.com/oscaribv/exotrending",
+        "rel": "/software/repository/github/oscaribv/exotrending",
+        "avatar": "https://avatars.githubusercontent.com/u/8753089?v=4",
+        "description": "A fast and easy-to-use light curve detrending software for exoplanets",
+        "topics": [
+            "exoplanets",
+            "astronomy",
+            "astrophysics"
+        ]
+    },
+    {
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+        "url": "https://github.com/oscaribv/pyaneti",
+        "rel": "/software/repository/github/oscaribv/pyaneti",
+        "avatar": "https://avatars.githubusercontent.com/u/8753089?v=4",
+        "description": "A multi-planet Radial Velocity and Transit modelling software",
+        "topics": [
+            "exoplanets",
+            "planets",
+            "mcmc",
+            "radial-velocities",
+            "multi-planet-fitting",
+            "transiting-planets"
+        ]
+    },
+    {
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+        "description": "A framework for hydrodynamics explorations and prototyping",
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+            "finite-volume-methods",
+            "hydrodynamics",
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-        "description": "A Bayesian inference software package for end-to-end fitting and interpretation of electromagnetic transients",
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+        "url": "https://github.com/watts-dev/watts",
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+        "description": "Workflow and Template Toolkit for Simulation (WATTS)",
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-            "supernovae",
-            "timedomainastronomy",
-            "astronomy",
-            "multi-messenger",
-            "tidal-disruptions",
-            "transients"
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-        "uid": "github/ComputationalPhysiology/simcardems",
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-        "description": "Simula Cardiac ElectroMechanics Solver",
-        "topics": []
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+        "description": "Extendable, dynamic, process-based herbivore simulator that can be integrated into a dynamic vegetation model. Written as a C++ library.",
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+            "dgvm",
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         "topics": []
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-        "description": "Photodynamical code for fitting the light curves of multiple body systems written by Josh Carter",
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-        "description": "Make some beautiful corner plots",
-        "topics": [
-            "python",
-            "plotting",
-            "data-analysis",
-            "data-visualization"
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-        "description": "I can haz planetz?",
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-        "description": "Scalable 1D Gaussian Processes in C++, Python, and Julia",
+        "uid": "github/exoclime/Helios-r2",
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+        "avatar": "https://avatars.githubusercontent.com/u/61202311?v=4",
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         "topics": [
-            "python",
-            "gaussian-processes",
-            "astronomy",
-            "time-series",
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             "exoplanets",
-            "julia",
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         "topics": []
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-            "parallaxer",
-            "infer-distances"
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+        "description": "Chemical Kinetics For Exoplanetary Atmospheres",
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+        "url": "https://github.com/m2aia/m2aia",
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-            "stoic",
-            "knight-challenge",
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-        "description": "numerical representation of differences between strings",
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+        "description": "C++ library for optimization-based control of redundant robots",
         "topics": []
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-        "description": "finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.",
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+        "description": "Digital spoligotyping of MTB strains from Illumina read data",
+        "topics": []
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+        "description": "Generates the training data for hierarchical inference of strongly-lensed systems with Bayesian neural networks",
         "topics": [
-            "python",
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+            "powerspectrum",
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-        "description": "Read and write FASTQ and FASTA efficiently from Python",
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+        "description": "Home of the semi-analytical / semi-numerical galaxy evolution and reionization code ASTRAEUS",
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+        "description": "Code to compute ionization field from density fields and source catalogue (CIFOG)",
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+        "description": "VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.",
         "topics": [
-            "image-processing",
-            "python",
-            "computer-vision"
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-        "description": "Configuration Space Covariances for Projected Galaxy 2-Point Statistics",
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-        "description": "A program to add geometrical limitations and detection biases of a transit survey to theoretical planetary systems.",
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-        "description": "Advanced Normalization Tools (ANTs)  ",
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         "topics": [
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-        "description": "OpenCMP is a computational multiphysics software package based on the finite element method. It is primarily intended for physicochemical processes involving significant convective flow.",
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+        "description": "Quantum mechanic mass spectrometry calculation program",
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-            "computational-fluid-dynamics",
-            "simulation",
-            "modeling"
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+        "url": "https://github.com/zpenoyre/CausticFrog",
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+        "description": "1D Lagrangian Simulation Package",
         "topics": []
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-        "uid": "github/uw-comphys/shapelets",
-        "url": "https://github.com/uw-comphys/shapelets",
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-        "description": "shapelets is a python package that implements several shapelet functions and some of their significant applications in science and astronomy.",
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+        "description": "Out-of-Transit Light Curve Generator",
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-        "description": "A library that implements the maxflow-mincut algorithm. ",
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-        "description": "Contains FreeFem source codes for modelling wave induced ice-shelf vibrations",
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         "topics": [
-            "freefem",
-            "ice-shelf"
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-        "description": "Yet another Hi-C scaffolding tool",
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+        "description": "SONG (Second Order Non-Gaussianity) is a Boltzmann code that computes many observables related to the Cosmic Microwave Background and to the cosmological perturbations at second order in perturbation theory.",
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-        "description": "A script to run the X-shooter pipeline",
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-        "description": "Python code for generating and running \"slimplectic\" integrators (nonconservative variational integrators)",
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+        "description": "A semi-analytic model for transits of spotted stars -- C implementation and Python API",
         "topics": []
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-        "url": "https://github.com/BogdanCiambur/PROFILER",
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-        "description": "This repository contains the code Profiler, a Python program for decomposing galaxy light profiles in 1D",
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-            "galaxy",
-            "decompose-galaxy-profiles",
-            "astronomical-algorithms",
-            "python",
-            "profile",
-            "lmfit"
-        ]
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+        "description": "SEREN SPH code (Hubber et al. 2011) for astrophysical hydrodynamics simulations",
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-        "uid": "github/VicidominiLab/BrightEyes-MCS",
-        "url": "https://github.com/VicidominiLab/BrightEyes-MCS",
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-        "avatar": "https://avatars.githubusercontent.com/u/61466143?v=4",
-        "description": "BrightEyes Microscope Control Suite",
+        "uid": "github/rahulshah1397/LADDER",
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-        "description": "fractopo is a Python package with tools for validating and analyzing lineament and fracture trace maps",
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-            "fracture",
-            "geology",
-            "topology",
-            "geometry",
-            "spatial-analysis",
-            "fractopo",
-            "python"
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+        "uid": "github/mivp/encube",
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+        "avatar": "https://avatars.githubusercontent.com/u/6645755?v=4",
+        "description": "Encube: large-scale comparative visulisation of sets of multidimensional data",
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-        "avatar": "https://avatars.githubusercontent.com/u/25670842?v=4",
-        "description": "GetMove algorithm in java",
+        "uid": "github/glis-glis/loci",
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         "topics": [
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-            "getmove",
-            "clustering-algorithm"
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-        "avatar": "https://avatars.githubusercontent.com/u/7799423?v=4",
-        "description": "Movie Making Utilities for FIRE simulations",
+        "uid": "github/BoPeng/simuPOP",
+        "url": "https://github.com/BoPeng/simuPOP",
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         "topics": []
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-        "uid": "github/caracal-pipeline/caracal",
-        "url": "https://github.com/caracal-pipeline/caracal",
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-        "avatar": "https://avatars.githubusercontent.com/u/60778763?v=4",
-        "description": "Containerized Automated Radio Astronomy Calibration (CARACal) pipeline ",
+        "uid": "github/IPIS-XieLei/CNTSeg",
+        "url": "https://github.com/IPIS-XieLei/CNTSeg",
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+        "avatar": "https://avatars.githubusercontent.com/u/103489682?v=4",
+        "description": "CNTSeg: A multimodal deep-learning-based network for cranial nerves tract segmentation",
         "topics": []
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     {
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-        "url": "https://github.com/caracal-pipeline/stimela",
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-        "avatar": "https://avatars.githubusercontent.com/u/60778763?v=4",
-        "description": "Stimela 2.0",
+        "uid": "github/cupy/cupy",
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+        "description": "NumPy-like API accelerated with CUDA",
         "topics": [
-            "radio-astronomy",
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         "topics": [
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-        "description": "MultiAgent Development Kit - version 5",
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-        "description": "Integrate neutrino geodesics in linear theory.",
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-        "description": "Library for cosmic neutrino calculations",
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+        "avatar": "https://avatars.githubusercontent.com/u/1044876?v=4",
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+        "topics": []
     },
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+        "url": "https://github.com/jobovy/galpy",
+        "rel": "/software/repository/github/jobovy/galpy",
+        "avatar": "https://avatars.githubusercontent.com/u/1044876?v=4",
+        "description": "Galactic Dynamics in python",
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+            "astrophysics",
+            "astronomy",
             "python",
-            "bioinformatics",
-            "genomics",
-            "ngs",
-            "rna-seq",
-            "chip-seq"
+            "dynamics",
+            "scientific-computing",
+            "physics",
+            "astropy-affiliated"
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-        "url": "https://github.com/deeptools/deeptools_intervals",
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-        "topics": [
-            "bioinformatics",
-            "interval-tree",
-            "gtf",
-            "bed"
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+        "uid": "github/jobovy/stream-stream",
+        "url": "https://github.com/jobovy/stream-stream",
+        "rel": "/software/repository/github/jobovy/stream-stream",
+        "avatar": "https://avatars.githubusercontent.com/u/1044876?v=4",
+        "description": "Investigation of the interaction between stellar and dark-matter streams",
+        "topics": []
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-        "uid": "github/michauhl/RBPBench",
-        "url": "https://github.com/michauhl/RBPBench",
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-        "avatar": "https://avatars.githubusercontent.com/u/10600238?v=4",
-        "description": "Evaluate CLIP-seq and other genomic region data using a comprehensive collection of known RBP binding motifs",
+        "uid": "github/jobovy/segueSelect",
+        "url": "https://github.com/jobovy/segueSelect",
+        "rel": "/software/repository/github/jobovy/segueSelect",
+        "avatar": "https://avatars.githubusercontent.com/u/1044876?v=4",
+        "description": "Selection function for the SDSS/SEGUE survey (G and K star samples)",
         "topics": []
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-        "avatar": "https://avatars.githubusercontent.com/u/32805862?v=4",
+        "uid": "github/frarei312/ExceS-A-An-Exon-Centric-Split-Aligner",
+        "url": "https://github.com/frarei312/ExceS-A-An-Exon-Centric-Split-Aligner",
+        "rel": "/software/repository/github/frarei312/ExceS-A-An-Exon-Centric-Split-Aligner",
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         "topics": []
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-        "avatar": "https://avatars0.githubusercontent.com/u/6849766?v=4",
-        "description": "Framework for Neural Style Transfer (NST) built upon PyTorch",
+        "uid": "github/C0PEP0D/otto",
+        "url": "https://github.com/C0PEP0D/otto",
+        "rel": "/software/repository/github/C0PEP0D/otto",
+        "avatar": "https://avatars.githubusercontent.com/u/83273482?v=4",
+        "description": "a Python package to simulate, solve and visualize the source-tracking POMDP",
         "topics": [
-            "python",
-            "neural-style-transfer",
-            "framework",
-            "pytorch"
+            "pomdp",
+            "reinforcement-learning",
+            "olfactory-search",
+            "source-tracking"
         ]
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     {
-        "uid": "github/odb9402/CNNPeaks",
-        "url": "https://github.com/odb9402/CNNPeaks",
-        "rel": "/software/repository/github/odb9402/CNNPeaks",
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-        "description": "The ChIP-Seq peak calling algorithm using convolution neural networks",
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-            "nvidia-docker",
-            "tensorflow",
-            "bioinformatics",
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-            "peak-calling",
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-            "gpu",
-            "docker-image",
-            "progressbar2",
-            "samtools",
-            "ngs-analysis",
-            "atac-seq"
-        ]
+        "uid": "github/zkdtc/MLC_ELGs",
+        "url": "https://github.com/zkdtc/MLC_ELGs",
+        "rel": "/software/repository/github/zkdtc/MLC_ELGs",
+        "avatar": "https://avatars.githubusercontent.com/u/26392765?v=4",
+        "description": "Machine Learning Classifiers for intermediate redshift Emission Line Galaxies",
+        "topics": []
     },
     {
-        "uid": "github/ewels/MultiQC",
-        "url": "https://github.com/MultiQC/MultiQC",
-        "rel": "/software/repository/github/ewels/MultiQC",
-        "avatar": "https://avatars.githubusercontent.com/u/18548644?v=4",
-        "description": "Aggregate results from bioinformatics analyses across many samples into a single report.",
+        "uid": "github/rabix/cwl-format",
+        "url": "https://github.com/rabix/cwl-format",
+        "rel": "/software/repository/github/rabix/cwl-format",
+        "avatar": "https://avatars.githubusercontent.com/u/7840207?v=4",
+        "description": "A very opinionated code formatter for CWL",
         "topics": [
-            "bioinformatics",
-            "analysis",
-            "pypi",
-            "bioconda",
-            "multiqc",
-            "python",
-            "data-visualization",
-            "quality-control",
-            "reporting",
-            "seqera",
-            "vizualisation"
+            "cwl",
+            "code-formatter",
+            "common-workflow-language"
         ]
     },
     {
-        "uid": "github/tnakazato/priism",
-        "url": "https://github.com/tnakazato/priism",
-        "rel": "/software/repository/github/tnakazato/priism",
-        "avatar": "https://avatars.githubusercontent.com/u/17893104?v=4",
-        "description": "PRIISM: Python Module for Radio Interferometry Imaging with Sparse Modeling",
+        "uid": "github/KTH-Nek5000/UQit",
+        "url": "https://github.com/KTH-Nek5000/UQit",
+        "rel": "/software/repository/github/KTH-Nek5000/UQit",
+        "avatar": "https://avatars.githubusercontent.com/u/17083799?v=4",
+        "description": null,
         "topics": []
     },
     {
-        "uid": "github/BradhamLab/icat",
-        "url": "https://github.com/BradhamLab/icat",
-        "rel": "/software/repository/github/BradhamLab/icat",
-        "avatar": "https://avatars.githubusercontent.com/u/39013433?v=4",
-        "description": "Identifying Cell-states Across Treatments",
+        "uid": "github/biocircuits/bioscrape",
+        "url": "https://github.com/biocircuits/bioscrape",
+        "rel": "/software/repository/github/biocircuits/bioscrape",
+        "avatar": "https://avatars.githubusercontent.com/u/34864391?v=4",
+        "description": "BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)",
         "topics": [
-            "clustering",
-            "machine-learning",
-            "self-supervised-learning",
-            "semi-supervised-learning",
-            "single-cell",
-            "single-cell-analysis",
-            "single-cell-rna-seq"
+            "simulation",
+            "chemical-reaction-networks",
+            "crn",
+            "stochastic-simulation-algorithm",
+            "python",
+            "cython",
+            "parameter-identification"
         ]
     },
     {
-        "uid": "github/NeuralEnsemble/elephant",
-        "url": "https://github.com/NeuralEnsemble/elephant",
-        "rel": "/software/repository/github/NeuralEnsemble/elephant",
-        "avatar": "https://avatars3.githubusercontent.com/u/1540309?v=4",
-        "description": "Elephant is the Electrophysiology Analysis Toolkit",
+        "uid": "github/Starlink/starlink",
+        "url": "https://github.com/Starlink/starlink",
+        "rel": "/software/repository/github/Starlink/starlink",
+        "avatar": "https://avatars.githubusercontent.com/u/2018671?v=4",
+        "description": "Starlink Software Collection",
         "topics": [
-            "python",
-            "data-analysis",
-            "electrophysiology",
-            "neurophysiology",
-            "neuroscience",
-            "statistics",
-            "hacktoberfest"
+            "astronomy"
         ]
     },
     {
-        "uid": "github/NeuralEnsemble/PyNN",
-        "url": "https://github.com/NeuralEnsemble/PyNN",
-        "rel": "/software/repository/github/NeuralEnsemble/PyNN",
-        "avatar": "https://avatars.githubusercontent.com/u/1540309?v=4",
-        "description": "A Python package for simulator-independent specification of neuronal network models.",
-        "topics": []
+        "uid": "github/Starlink/ORAC-DR",
+        "url": "https://github.com/Starlink/ORAC-DR",
+        "rel": "/software/repository/github/Starlink/ORAC-DR",
+        "avatar": "https://avatars.githubusercontent.com/u/2018671?v=4",
+        "description": "The ORAC-DR astronomy data reduction pipeline",
+        "topics": [
+            "perl",
+            "orac-dr",
+            "pipeline-framework",
+            "astronomy"
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     },
     {
-        "uid": "github/yuansliu/minirmd",
-        "url": "https://github.com/yuansliu/minirmd",
-        "rel": "/software/repository/github/yuansliu/minirmd",
-        "avatar": "https://avatars2.githubusercontent.com/u/7776655?v=4",
-        "description": null,
-        "topics": []
+        "uid": "github/Starlink/starjava",
+        "url": "https://github.com/Starlink/starjava",
+        "rel": "/software/repository/github/Starlink/starjava",
+        "avatar": "https://avatars.githubusercontent.com/u/2018671?v=4",
+        "description": "Java applications initially developed for the Starlink Project but now developed independently",
+        "topics": [
+            "java",
+            "astronomy"
+        ]
     },
     {
-        "uid": "github/chianti-atomic/ChiantiPy",
-        "url": "https://github.com/chianti-atomic/ChiantiPy",
-        "rel": "/software/repository/github/chianti-atomic/ChiantiPy",
-        "avatar": "https://avatars.githubusercontent.com/u/8628468?v=4",
-        "description": "ChiantiPy is a python package to calculate the radiative properties of astrophysical plasmas based on the CHIANTI atomic database",
+        "uid": "github/Starlink/hds-v5",
+        "url": "https://github.com/Starlink/hds-v5",
+        "rel": "/software/repository/github/Starlink/hds-v5",
+        "avatar": "https://avatars.githubusercontent.com/u/2018671?v=4",
+        "description": "HDS API implemented using HDF5",
         "topics": [
-            "python",
-            "chianti-atomic-database",
-            "chianti",
-            "spectroscopy",
-            "astrophysics"
+            "astronomy",
+            "file-format",
+            "c"
         ]
     },
     {
-        "uid": "github/JieZheng-ShanghaiTech/PiLSL",
-        "url": "https://github.com/JieZheng-ShanghaiTech/PiLSL",
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-        "avatar": "https://avatars.githubusercontent.com/u/47076474?v=4",
-        "description": "PiLSL is a pairwise interaction learning-based graph neural network (GNN) model for prediction of synthetic lethality (SL) as anti-cancer drug targets. It learns the representation of pairwise interaction between two genes from a knowledge graph (KG).",
+        "uid": "github/Starlink/palpy",
+        "url": "https://github.com/Starlink/palpy",
+        "rel": "/software/repository/github/Starlink/palpy",
+        "avatar": "https://avatars.githubusercontent.com/u/2018671?v=4",
+        "description": "Python interface to the PAL positional astronomy library",
         "topics": [
-            "bioinformatics",
-            "data-science",
-            "drug-discovery",
-            "machine-learning"
+            "python",
+            "astronomy",
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     },
     {
-        "uid": "github/askap-craco/CELEBI",
-        "url": "https://github.com/askap-craco/CELEBI",
-        "rel": "/software/repository/github/askap-craco/CELEBI",
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-        "description": "The CRAFT Effortless Localisation and Enhanced Burst Inspection Pipeline",
-        "topics": []
+        "uid": "github/Starlink/pal",
+        "url": "https://github.com/Starlink/pal",
+        "rel": "/software/repository/github/Starlink/pal",
+        "avatar": "https://avatars.githubusercontent.com/u/2018671?v=4",
+        "description": "Positional Astronomy Library",
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+            "wcs"
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     },
     {
-        "uid": "github/GregoryFaust/samblaster",
-        "url": "https://github.com/GregoryFaust/samblaster",
-        "rel": "/software/repository/github/GregoryFaust/samblaster",
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-        "description": "samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.",
-        "topics": []
+        "uid": "github/Starlink/aspic",
+        "url": "https://github.com/Starlink/aspic",
+        "rel": "/software/repository/github/Starlink/aspic",
+        "avatar": "https://avatars.githubusercontent.com/u/2018671?v=4",
+        "description": "Starlink Image processing programs from the 1980s",
+        "topics": [
+            "astronomy",
+            "fortran"
+        ]
     },
     {
-        "uid": "github/GregoryFaust/yaha",
-        "url": "https://github.com/GregoryFaust/yaha",
-        "rel": "/software/repository/github/GregoryFaust/yaha",
-        "avatar": "https://avatars.githubusercontent.com/u/6653381?v=4",
-        "description": "yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp to 32kb.",
-        "topics": []
+        "uid": "github/Starlink/perl-Starlink-Autoastrom",
+        "url": "https://github.com/Starlink/perl-Starlink-Autoastrom",
+        "rel": "/software/repository/github/Starlink/perl-Starlink-Autoastrom",
+        "avatar": "https://avatars.githubusercontent.com/u/2018671?v=4",
+        "description": "Starlink Auto astrometry software",
+        "topics": [
+            "perl",
+            "astronomy",
+            "wcs"
+        ]
     },
     {
-        "uid": "github/PeterBartram/TES",
-        "url": "https://github.com/PeterBartram/TES",
-        "rel": "/software/repository/github/PeterBartram/TES",
-        "avatar": "https://avatars.githubusercontent.com/u/22742253?v=4",
-        "description": "Terrestrial Exoplanet Simulator public repository",
+        "uid": "github/genouest/biomaj-daemon",
+        "url": "https://github.com/genouest/biomaj-daemon",
+        "rel": "/software/repository/github/genouest/biomaj-daemon",
+        "avatar": "https://avatars.githubusercontent.com/u/1004255?v=4",
+        "description": "micro service to manage biomaj client requests and bank updates",
         "topics": []
     },
     {
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-        "url": "https://github.com/jdiasn/lidarSuit",
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-        "avatar": "https://avatars.githubusercontent.com/u/11823854?v=4",
-        "description": "Archived. Please check https://github.com/jdiasn/lidarwind",
+        "uid": "github/genouest/biomaj-cli",
+        "url": "https://github.com/genouest/biomaj-cli",
+        "rel": "/software/repository/github/genouest/biomaj-cli",
+        "avatar": "https://avatars.githubusercontent.com/u/1004255?v=4",
+        "description": "CLI for BioMAJ",
         "topics": []
     },
     {
-        "uid": "github/ebundhoo/TAGOPSIN",
-        "url": "https://github.com/ebundhoo/TAGOPSIN",
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-        "avatar": "https://avatars.githubusercontent.com/u/44093400?v=4",
-        "description": "Data(base) integration using the data warehousing approach",
+        "uid": "github/obreschkow/dftools",
+        "url": "https://github.com/obreschkow/dftools",
+        "rel": "/software/repository/github/obreschkow/dftools",
+        "avatar": "https://avatars.githubusercontent.com/u/28353939?v=4",
+        "description": null,
         "topics": []
     },
     {
-        "uid": "github/ArnaudCassan/microlensing",
-        "url": "https://github.com/ArnaudCassan/microlensing",
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-        "avatar": "https://avatars.githubusercontent.com/u/25842440?v=4",
-        "description": "Gravitational microlensing",
+        "uid": "github/vortex-exoplanet/VIP",
+        "url": "https://github.com/vortex-exoplanet/VIP",
+        "rel": "/software/repository/github/vortex-exoplanet/VIP",
+        "avatar": "https://avatars.githubusercontent.com/u/13556028?v=4",
+        "description": "VIP is a python package/library for angular, reference star and spectral differential imaging for exoplanet/disk detection through high-contrast imaging.",
         "topics": [
-            "microlensing",
-            "astronomy",
-            "numerical-computation",
-            "caustics",
-            "critical-curves"
+            "data-processing",
+            "high-contrast-imaging",
+            "low-rank-approximation",
+            "image-processing",
+            "extrasolar-planets-disks",
+            "pca",
+            "mcmc"
         ]
     },
     {
-        "uid": "github/FePhyFoFum/phyx",
-        "url": "https://github.com/FePhyFoFum/phyx",
-        "rel": "/software/repository/github/FePhyFoFum/phyx",
-        "avatar": "https://avatars.githubusercontent.com/u/3589956?v=4",
-        "description": "phylogenetics tools for linux (and other mostly posix compliant) computers",
+        "uid": "github/Yingjie4Science/SDGdetector",
+        "url": "https://github.com/Yingjie4Science/SDGdetector",
+        "rel": "/software/repository/github/Yingjie4Science/SDGdetector",
+        "avatar": "https://avatars.githubusercontent.com/u/40079217?v=4",
+        "description": "A novel R package that can identify and visualize 17 Sustainable Development Goals and associated 169 Targets in text",
         "topics": [
-            "phylogenetics",
-            "molecular-evolution",
-            "simulation"
+            "r-package",
+            "sdg",
+            "sdgs",
+            "sustainable-development-goals",
+            "text-mining"
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-        "avatar": "https://avatars.githubusercontent.com/u/17591901?v=4",
-        "description": "Python library to handle KMC codes.",
+        "uid": "github/relipmoc/skewer",
+        "url": "https://github.com/relipmoc/skewer",
+        "rel": "/software/repository/github/relipmoc/skewer",
+        "avatar": "https://avatars.githubusercontent.com/u/7967213?v=4",
+        "description": "implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming.  It is specially designed for processing next-generation sequencing (NGS) paired-end sequences.",
         "topics": []
     },
     {
-        "uid": "github/SCM-NV/qmflows-namd",
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-        "avatar": "https://avatars2.githubusercontent.com/u/17591901?v=4",
-        "description": "Package containing several workflows to compute molecular properties for nanomaterials",
+        "uid": "github/YonghuiDong/RawHummus",
+        "url": "https://github.com/YonghuiDong/RawHummus",
+        "rel": "/software/repository/github/YonghuiDong/RawHummus",
+        "avatar": "https://avatars.githubusercontent.com/u/22663189?v=4",
+        "description": "QC Check Tool for Metabolomics",
         "topics": [
-            "science",
-            "chemistry",
-            "physics",
-            "materials",
-            "quantum-chemistry",
-            "scientific-workflows",
-            "nanomaterials"
+            "metabolomics",
+            "lcms",
+            "orbitrap",
+            "quality-control"
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     {
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-        "url": "https://github.com/SCM-NV/qmflows",
-        "rel": "/software/repository/github/SCM-NV/qmflows",
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-        "description": "This library tackles the construction and efficient execution of computational chemistry workflows",
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-            "science",
-            "bioinformatics",
-            "chemistry",
-            "automation",
-            "python-3",
-            "materials",
-            "scientific-workflows"
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+        "url": "https://github.com/pmkruyen/dearscholar",
+        "rel": "/software/repository/github/pmkruyen/dearscholar",
+        "avatar": "https://avatars1.githubusercontent.com/u/20207147?v=4",
+        "description": "DearScholar: An open-source smartphone app for longitudinal scientific qualitative and quantitative (self-report) diary, log and survey research",
+        "topics": []
     },
     {
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-        "description": "Deep learning for the automated spectral classification of supernovae",
+        "uid": "github/huiwenke/MineProt",
+        "url": "https://github.com/huiwenke/MineProt",
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+        "description": "Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl ",
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+        "description": "Peptide-MHC I binding affinity prediction",
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-        "url": "https://github.com/nextstrain/augur",
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-        "description": "Pipeline components for real-time phylodynamic analysis",
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+        "avatar": "https://avatars.githubusercontent.com/u/10982870?v=4",
+        "description": "A repo for the SciCrunch antibody registry portal ",
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-        "description": "A Python package for calculations with the MRP parameterisation of the Halo Mass Function.",
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+        "url": "https://github.com/Keck-DataReductionPipelines/MosfireDRP",
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-        "description": "Integrated toolkit for analysis and evaluation of annotated genomes",
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+        "url": "https://github.com/alessiospuriomancini/cosmopower",
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+        "description": "Machine Learning - accelerated Bayesian inference",
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-        "description": "Code for fitting galaxy cluster scaling relations using MCMC",
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+        "url": "https://github.com/mggg/ecological-inference",
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-        "description": "A set of python modules for producing simple plots, statistics, common calculations, coordinate conversions, and manipulating FITS images with World Coordinate System (WCS) information.",
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+        "url": "https://github.com/tardis-sn/carsus",
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+        "avatar": "https://avatars.githubusercontent.com/u/6108234?v=4",
+        "description": "Atomic Database for Astronomy",
         "topics": [
-            "astronomy-library"
+            "python",
+            "astronomy",
+            "atomic-database"
         ]
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-        "uid": "github/parthenon-hpc-lab/parthenon",
-        "url": "https://github.com/parthenon-hpc-lab/parthenon",
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-        "avatar": "https://avatars.githubusercontent.com/u/115286644?v=4",
-        "description": "Parthenon AMR infrastructure ",
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+        "description": "TARDIS - Temperature And Radiative Diffusion In Supernovae",
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+            "astrophysics",
+            "python",
+            "supernova",
+            "radiative-transfer"
+        ]
+    },
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+        "uid": "github/yangao07/abPOA",
+        "url": "https://github.com/yangao07/abPOA",
+        "rel": "/software/repository/github/yangao07/abPOA",
+        "avatar": "https://avatars.githubusercontent.com/u/5309122?v=4",
+        "description": "abPOA: an SIMD-based C library for fast partial order alignment using adaptive band",
+        "topics": [
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+            "partial-order-alignment",
+            "banded-dp",
+            "long-reads",
+            "consensus-sequences",
+            "multiple-sequence-alignment",
+            "alignment-graph",
+            "consensus-sequence",
+            "gfa-format"
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+        "url": "https://github.com/yangao07/TideHunter",
+        "rel": "/software/repository/github/yangao07/TideHunter",
+        "avatar": "https://avatars.githubusercontent.com/u/5309122?v=4",
+        "description": "TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain",
+        "topics": [
+            "long-reads",
+            "seed-and-chain",
+            "multiple-sequence-alignment",
+            "partial-order-alignment",
+            "tandem-repeats"
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+    },
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+        "uid": "github/BGI-Qingdao/TGS-GapCloser",
+        "url": "https://github.com/BGI-Qingdao/TGS-GapCloser",
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+        "avatar": "https://avatars.githubusercontent.com/u/39953106?v=4",
+        "description": "A gap-closing software tool that uses long reads to enhance genome assembly.",
         "topics": []
     },
     {
-        "uid": "github/haiyang1986/TVAR",
-        "url": "https://github.com/haiyang1986/TVAR",
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-        "avatar": "https://avatars.githubusercontent.com/u/52192058?v=4",
-        "description": "a deep learning approach for assessing tissue-specific functional effects of non-coding variants",
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+        "url": null,
+        "rel": "/software/repository/github/khowe/quick",
+        "avatar": "",
+        "description": "an efficient implementation of the Neighbor-Joining algorithm.",
         "topics": []
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-        "uid": "github/pmelsted/pizzly",
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-        "description": "Source code and data for \"Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures for drug discovery\"",
+        "uid": "github/datngu/Circall",
+        "url": "https://github.com/datngu/Circall",
+        "rel": "/software/repository/github/datngu/Circall",
+        "avatar": "https://avatars.githubusercontent.com/u/59732388?v=4",
+        "description": "Circall is a novel method to discover circular RNA from paired-end RNA sequencing data",
+        "topics": []
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+        "uid": "github/weizhongli/cdhit",
+        "url": "https://github.com/weizhongli/cdhit",
+        "rel": "/software/repository/github/weizhongli/cdhit",
+        "avatar": "https://avatars.githubusercontent.com/u/12239246?v=4",
+        "description": "clusters and compares protein or nucleotide sequences.",
         "topics": [
-            "knowledge-graph",
-            "causal-networks",
-            "drug-discovery",
-            "mechanism-of-action",
-            "transcriptomics",
-            "network-biology"
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-        "description": "A Python wrapper of the Phase Dispersion Minimization (PDM), which is a C code written by Stellingwerf.",
+        "uid": "github/Jinsl-lab/SDImpute",
+        "url": "https://github.com/Jinsl-lab/SDImpute",
+        "rel": "/software/repository/github/Jinsl-lab/SDImpute",
+        "avatar": "https://avatars.githubusercontent.com/u/65643584?v=4",
+        "description": "A R package.",
+        "topics": []
+    },
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+        "uid": "github/musevlt/muse-psfr",
+        "url": "https://github.com/musevlt/muse-psfr",
+        "rel": "/software/repository/github/musevlt/muse-psfr",
+        "avatar": "https://avatars.githubusercontent.com/u/28007568?v=4",
+        "description": "MUSE-PSFR - PSF reconstruction for MUSE WFM-AO",
         "topics": [
-            "phase-dispersion-minimization",
+            "python",
+            "astronomy",
             "astrophysics",
-            "periodogram"
+            "musevlt",
+            "adaptive-optics"
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     {
-        "uid": "github/connectomicslab/connectomemapper3",
-        "url": "https://github.com/connectomicslab/connectomemapper3",
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+        "url": "https://github.com/musevlt/origin",
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+        "avatar": "https://avatars.githubusercontent.com/u/28007568?v=4",
+        "description": "ORIGIN: detectiOn and extRactIon of Galaxy emIssion liNes",
         "topics": [
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-            "bidsapp",
-            "dmri",
-            "fmri",
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-            "bids-apps",
-            "pipelines",
-            "chuv",
-            "brain",
-            "parcellation",
             "python",
-            "eeg"
+            "astronomy",
+            "astrophysics",
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+            "musevlt"
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     {
-        "uid": "github/nombac/optab",
-        "url": "https://github.com/nombac/optab",
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-        "avatar": "https://avatars.githubusercontent.com/u/38897846?v=4",
-        "description": "Public Fortran90 code package for generating ideal-gas opacity tables",
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+        "rel": "/software/repository/github/max-little/GRAPL",
+        "avatar": "https://avatars.githubusercontent.com/u/102555976?v=4",
+        "description": "GRAPL: A computational library for nonparametric structural causal modelling, analysis and inference",
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-        "url": "https://github.com/latrop/DECA",
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-        "avatar": "https://avatars.githubusercontent.com/u/382630?v=4",
-        "description": "A tool for decomposition of images of galaxies",
+        "uid": "github/ylxu05/HN-PPISP",
+        "url": "https://github.com/ylxu05/HN-PPISP",
+        "rel": "/software/repository/github/ylxu05/HN-PPISP",
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-        "description": "Graph Source Localization Library",
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         "topics": [
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-        "description": "Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing",
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+        "description": "extrapops: fast simulation and analysis of extra-galactic binary GW sources",
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-        "description": "Excimontec is an open-source KMC simulation software package for modeling the optoelectronic processes in organic semiconductor materials and devices, such as OPVs, OLEDs, and more. ",
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+        "url": "https://github.com/nworbde/dStar",
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+        "avatar": "https://avatars.githubusercontent.com/u/7050112?v=4",
+        "description": "routines for computing neutron star structure and evolution",
         "topics": [
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-            "mpi",
-            "organic-semiconductors"
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-        "description": "A predictor for m6A sites.",
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+        "description": "Library for the CLEAR collaboration codebase.",
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-        "description": "A Python package for calculating detection limits for exoplanet high contrast imaging (HCI) datasets.",
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-            "direct-imaging",
-            "exoplanet-detection",
-            "exoplanets",
-            "high-contrast-imaging",
-            "python"
-        ]
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+        "description": "A python tool for calculating the exclusion plot for Dark Matter interaction with the Standard Model in non-relativistic Effective Theory Models. ",
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-            "visualization",
-            "phylogenetic-trees"
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-        "description": "Analyze parental contributions to evolved or engineered protein or DNA sequences",
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+        "description": "GDL - GNU Data Language",
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+            "geophysics",
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+            "scientific-computing",
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+            "gsl-library",
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+            "dicom",
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+            "grib",
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+        "avatar": "https://avatars.githubusercontent.com/u/79319338?v=4",
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         "topics": []
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-        "description": "Unsupervised clustering method for stellar clusters.",
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-        "description": "PIAO (\u6f02) is efficient memory-controlled python code using the standard SO algorithm to identify halos.",
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+        "description": "Map genetic variants and protein positions to protein interfaces in 3D",
         "topics": []
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-        "description": "GPU/CPU optimized software for morpho-kinematic galaxy parameter estimation.",
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+        "description": "A Python built Convolutional Neural Network to classify simulated images as containing a gravitational lens or not.",
         "topics": []
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-        "description": "Variant Caller and Patcher",
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+        "description": "Tool for predicting the protein targets of bioactive small molecules",
         "topics": []
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+        "description": "Scientific software for analysis of confluent cell dynamics.",
         "topics": [
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+        "description": "Package for standard and sediment correction receiver functions analysis",
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+        "description": "Lammps package including square-like well potential to implement Mold integration and Lattice mold techniques",
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-        "description": "Python library for the Emotiv EPOC headset",
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+            "xarray",
+            "climate-science",
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+            "climate-data",
+            "cdat",
+            "xcdat",
+            "climate-research",
+            "climate-analysis",
+            "climate-sciences",
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+        "description": "Compilation of thermo-physical properties for lead/bismuth-based liquid metals for fast reactor technology",
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+        "avatar": "https://avatars.githubusercontent.com/u/2245740?v=4",
+        "description": "Prediciting the position of exoplanets",
         "topics": [
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-            "pipeline"
+            "astronomy",
+            "exoplanets",
+            "python"
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-        "description": "Download files from NCBI Entrez by accession",
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-        "description": "An(other) implementation of JSON Schema for Python",
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+        "rel": "/software/repository/github/seheonoh/2dbat",
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-        "description": "A Julia package for simulation, inference and learning of Hidden Markov Models.",
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+        "description": "The Drone Swarm Search project provides an environment for SAR missions built on PettingZoo, where agents, represented by drones, are tasked with locating targets identified as shipwrecked individuals.",
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-            "forward-backward",
-            "viterbi",
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-        "description": "CUDA code designed to simulate interferometric data using point, Gaussian, and shapelet sky models",
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+        "description": "Variational Bayesian Inference for Genome-Wide Regression",
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-        "description": "Markerless kinematics, from OpenPose to OpenSim",
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+        "description": "Google Earth Engine for R",
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-            "biomechanics",
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-            "pose-estimation",
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+        "description": "Linked Data Visualizations Across Multiple Files",
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-        "description": "Calculates various definitions of effective mass from the electronic bandstructure of a semiconductor.",
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-        "description": "A PipelinE to Reduce Observations - The DRS for SPIRou (CFHT)",
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+        "description": "UniDAM tool: A Unified tool to estimate Distances, Ages, and Masses of stars from spectrophotometric, astrometric (Gaia) and asteroseismic data",
+        "topics": [
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+            "astronomy",
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+        "description": "BlackJAX is a sampling library designed for ease of use, speed and modularity.",
+        "topics": [
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+            "sampling-methods",
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+        "description": "Demultiplexing pooled scRNA-seq data with or without genotype reference",
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-        "description": "Deep probabilistic analysis of single-cell omics data",
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+        "description": "Efficient genotyping bi-allelic SNPs on single cells",
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-            "single-cell-rna-seq",
-            "deep-generative-model",
-            "human-cell-atlas",
-            "scverse",
-            "deep-learning"
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+            "genetic-variants",
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-        "description": "Gene prediction in metagenomic sequences using Glimmer augmented by phylogenetic classification and clustering",
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+        "description": "Deep dilated convolutional residual neural network for predicting interchain contacts of protein homodimers",
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-        "description": "This web app is intended for demo purposes only!",
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-        "description": "A Python library for pressure profile measurements in SZ observations of galaxy clusters.",
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+        "description": "The EIGENSOFT package combines functionality from our population genetics methods (Patterson et al. 2006) and our EIGENSTRAT stratification correction method (Price et al. 2006).",
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-        "description": "A code for Bayesian SED synthesis and analysis of galaxies and AGNs",
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-        "description": "GHEtool is an open-source tool for borefield sizing and ground temperature evolution plotting.",
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         "topics": [
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+        "description": "ultrafast ANI querying and taxonomic profiling for metagenomic shotgun samples  by abundance-corrected minhash.",
         "topics": [
-            "gene-trees",
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-            "orthologs",
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-        "description": "doc2vec-based assisted close reading with support for abstract concept-based search and context-based search",
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+        "description": "Finite Element Method for Electrochemical Transport (EchemFEM)",
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+            "finite-element-method",
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-            "idseq"
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+        "description": "BioSTEAM's Premier Thermodynamic Engine",
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-            "visualization",
-            "scrna-seq",
-            "transcriptomics",
-            "dataviz"
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+            "reaction",
+            "chemical",
+            "mixture",
+            "properties",
+            "vapor-liquid-equilibrium",
+            "material-and-energy-balance",
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-        "description": "Stand alone js browser for EDAM Ontology",
+        "uid": "github/Ensembl/WiggleTools",
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+        "description": "Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency",
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+        "description": "Python testbed for the Quadratic Multiple Knapsack Problem (QMKP)",
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+            "operations-research",
+            "optimization"
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+        "description": "A Computational Approach to Generate Multi-Shift Rotational Workforce Schedules.",
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+        "description": "A Dynamic Graphical User Interface package, which gives users a method to construct temporary, permanent and/or a set of GUI:s for users in a simple and fast manner combined with diagnostics tools (with advance 1D and 2D plotting methods).",
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-        "description": "RESP with inter- and intra-molecular constraints in Psi4.",
+        "uid": "github/COVID-IWG/epimargin",
+        "url": "https://github.com/COVID-IWG/epimargin",
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+        "description": "networked, stochastic SIRD epidemiological model with Bayesian parameter estimation and policy scenario comparison tools ",
         "topics": [
-            "psi4",
-            "atomic-charges",
-            "python",
-            "molecular-dynamics"
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+            "bayesian-methods",
+            "india",
+            "sird-model",
+            "stochastic-modeling"
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     {
-        "uid": "github/moeyensj/atm",
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-        "rel": "/software/repository/github/moeyensj/atm",
-        "avatar": "https://avatars.githubusercontent.com/u/4206654?v=4",
-        "description": "Asteroid Thermal Modeling",
+        "uid": "github/lumen-org/lumen",
+        "url": "https://github.com/lumen-org/lumen",
+        "rel": "/software/repository/github/lumen-org/lumen",
+        "avatar": "https://avatars.githubusercontent.com/u/43880697?v=4",
+        "description": "Interactive web application for the exploration, comparision and validation of probability models and its data",
         "topics": [
-            "python",
-            "asteroids",
-            "astronomy",
-            "solar-system",
-            "mcmc",
-            "pymc3",
-            "minor-planets",
-            "open-source-project"
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         ]
     },
     {
-        "uid": "github/scotthgn/AGNvar",
-        "url": "https://github.com/scotthgn/AGNvar",
-        "rel": "/software/repository/github/scotthgn/AGNvar",
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-        "description": "Python code for modelling spectral timing properties in AGN. Performs calculations of fully time-dependent SEDs following an input variable X-ray light-curve (See Hagen & Done (2023a)",
-        "topics": [
-            "agn",
-            "astrophysics"
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+        "uid": "github/nicolet5/DiffCapAnalyzer",
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+        "description": "A tool for quantitative analysis of differential capacity data! ",
+        "topics": []
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     {
-        "uid": "github/scotthgn/relagn",
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+        "uid": "github/muctadir/lama",
+        "url": "https://github.com/muctadir/lama",
+        "rel": "/software/repository/github/muctadir/lama",
+        "avatar": "https://avatars.githubusercontent.com/u/2332130?v=4",
+        "description": "LaMa, short for Labelling Machine, is an web application developed for aiding in thematic analysis of qualitative data. ",
         "topics": [
-            "astronomy",
-            "astrophysics",
-            "black-holes",
-            "relativity",
-            "spectral-analysis",
-            "spectral-modelling"
+            "angular",
+            "docker",
+            "python",
+            "qualitative-research",
+            "thematic-analysis",
+            "qualitative-analysis",
+            "text-labeling"
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     },
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-        "avatar": "https://avatars.githubusercontent.com/u/4763879?v=4",
-        "description": "Algebraic Multigrid Solvers in Python",
+        "uid": "github/spokenlanguage/platalea",
+        "url": "https://github.com/spokenlanguage/platalea",
+        "rel": "/software/repository/github/spokenlanguage/platalea",
+        "avatar": "https://avatars.githubusercontent.com/u/61155109?v=4",
+        "description": "Library for training visually-grounded models of spoken language understanding.",
         "topics": [
-            "amg",
-            "solver",
-            "python",
-            "multigrid",
-            "sparse-matrix",
-            "pyamg",
-            "conda",
-            "krylov"
+            "visually-grounded-speech",
+            "multi-tasking",
+            "spoken-language-understanding",
+            "deep-neural-networks",
+            "speech-processing",
+            "weakly-supervised-learning",
+            "multimodal-learning",
+            "pytorch",
+            "flickr8k",
+            "spokencoco"
         ]
     },
     {
-        "uid": "github/FlorianThibord/OptimiR",
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-        "description": "miRSeq data alignment workflow - integrates genetic information to assess the impact of variants on miRNA expression",
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+        "url": "https://github.com/mmollina/viewpoly",
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+        "description": "R package to visualize genetic maps and QTL analysis.",
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-        "description": "General Relativistic, Spherically Symmetry, Neutrino Transport Code for Stellar Collapse",
+        "uid": "github/Yu606/odyssey",
+        "url": "https://github.com/Yu606/odyssey",
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-        "avatar": "https://avatars1.githubusercontent.com/u/1334561?v=4",
-        "description": "Chromosome visualization for the web",
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         "topics": [
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-            "genomics",
-            "cytogenetics",
-            "karyotype",
-            "cancer-genomics",
-            "comparative-genomics",
-            "personal-genomics"
+            "cfd",
+            "c-plus-plus",
+            "simulation",
+            "optimization",
+            "python",
+            "opensource",
+            "physics",
+            "flow",
+            "fluid",
+            "fluid-dynamics",
+            "hpc"
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-        "avatar": "https://avatars.githubusercontent.com/u/30041437?v=4",
-        "description": "Nanopore read de-multiplexer",
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+        "avatar": "https://avatars.githubusercontent.com/u/42353087?v=4",
+        "description": "Generates initial conditions for cosmological N-body simulations, optionally applying Particle Linear Theory corrections.",
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+            "nbody",
+            "nbody-simulation"
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+    {
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+        "avatar": "https://avatars.githubusercontent.com/u/16171392?v=4",
+        "description": "codes to compare simulation data to various observations",
         "topics": []
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     {
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-        "url": "https://github.com/artic-network/fieldbioinformatics",
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-        "avatar": "https://avatars.githubusercontent.com/u/30041437?v=4",
-        "description": "The ARTIC field bioinformatics pipeline",
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-        "description": "GOLEM: distribution of Gene regulatOry eLEMents within the plant promoters",
-        "topics": []
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+        "description": "BridgeStan provides efficient in-memory access through Python, Julia, and R to the methods of a Stan model.",
+        "topics": [
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+            "julia",
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-        "description": "Calculate the equilibrium charge distribution for a dust grain of a given size and composition, depending on the local interstellar medium conditions, such as: density, temperature, ionization fraction, local radiation field strength and cosmic ray ionization fraction.",
-        "topics": []
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+        "description": "Bacterial analysis Toolbox for profiling the Resistome of ESKAPE pathogens using WGS",
+        "topics": [
+            "bacteria",
+            "resistome",
+            "eskape",
+            "wgs",
+            "illumina"
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-        "avatar": "https://avatars.githubusercontent.com/u/40694862?v=4",
-        "description": "Tools for analysing of pulsar scintillations ",
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+        "url": "https://github.com/bramvandijk88/cacatoo",
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         "topics": []
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         "topics": []
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+        "description": "Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.",
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         "topics": [
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+        "description": "Tool for evaluating atmospheric carbon dioxide concentrations as simulated by Earth system models",
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+            "earth-observation",
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+            "data-visualization"
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+        "description": "South Australian Macrobenthic Traits database ",
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-        "description": "A Python package for calculating and performing basic manipulations on symmetric polynomials.",
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+        "description": "Yet Another Chimeric Read Detector",
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-            "jupyerlab",
-            "physics",
-            "python"
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-        "description": "Pynkowski is a Python package to compute Minkowski Functionals, as well as their expected values for different fields.",
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-            "curvature",
-            "anisotropy",
-            "minkowski-functionals",
-            "non-gaussianities",
-            "python"
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-        "description": "This is a Python Package aimed at the use of needlets to filter spherical maps, detecting the maxima within the maps and analysing them using a multiple testing approach.",
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-        "description": "Official repository for 21cmFAST: a code for generating fast simulations of the cosmological 21cm signal",
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+        "description": "Tools for analyzing spiking data.",
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+            "spikes",
+            "single-unit",
+            "spike-analysis",
+            "python",
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-        "description": "A library for network {reconstruction, distances, dynamics}",
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-        "description": "TRiple Evolution Simulation package",
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-        "description": "Straightforward fuzzy matching, information retrieval and NLP building blocks for JavaScript.",
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-            "machine-learning",
-            "fuzzy-matching",
-            "clustering",
-            "record-linkage",
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+            "crystallography",
+            "high-throughput",
+            "site-analysis",
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-        "description": "PSF Imagette Photometric Extraction - PSF photometry for CHEOPS data",
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-        "description": "Predicting multiple-planet systems for TESS",
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-            "novels",
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+            "pan-genome",
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-            "alignment-free",
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-            "finite-difference-method",
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+            "vertex",
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+        "description": "This is an R package designed to analyze functional enrichment results between two species (A list of genes and their orthologues)",
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-        "description": "Image Mosaics for Astronomers",
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+        "description": "Chromosome visualization for the web",
+        "topics": [
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+            "genomics",
+            "cytogenetics",
+            "karyotype",
+            "cancer-genomics",
+            "comparative-genomics",
+            "personal-genomics"
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-        "description": "Phylogenetic Network Inference without ILS",
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+        "description": "GluPredKit aims to make blood glucose model training and prediction more accessible. ",
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+            "machine-learning",
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+        "description": "A Python package for performing self-consistent population synthesis and galactic dynamics simulations",
         "topics": [
-            "spectral-types",
-            "metallicity",
+            "astrophysics",
+            "galactic-dynamics",
+            "population-synthesis",
+            "python"
+        ]
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+        "description": "A collaborative software to download the energy database Marktstammdatenregister (MaStR)",
+        "topics": [
+            "open-energy-family",
+            "oep",
+            "marktstammdatenregister",
             "python",
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+            "energy",
+            "energy-data",
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@@ -34905,7559 +33594,8190 @@
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+        "avatar": "https://avatars.githubusercontent.com/u/5293931?v=4",
+        "description": "A stand-alone version of Dehnen's GalaxyPotential code.",
+        "topics": []
+    },
+    {
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+        "url": "https://github.com/PaulMcMillan-Astro/Torus",
+        "rel": "/software/repository/github/PaulMcMillan-Astro/Torus",
+        "avatar": "https://avatars.githubusercontent.com/u/5293931?v=4",
+        "description": "Torus Code",
+        "topics": []
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+        "description": "SPectroscopic and Interferometric Orbital Solution finder",
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+        "description": "A complete VOEvent transport system",
+        "topics": [
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+        "description": "a general-purpose tool for evaluation of models of radio telescope beams.",
+        "topics": []
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+        "description": "Python package for constraining black hole spins using the properties of relativistic tidal forces",
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-        "description": "a framework that integrates optical mapping, high-throughput chromosome conformation capture (Hi-C), and whole genome sequencing to systematically detect SVs in a variety of normal or cancer samples and cell lines.",
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-            "rstats",
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-        "description": "a Bioinformatics Tool for Annotating and Enrichment Analysis with Disease Ontology",
+        "uid": "github/Gabaldonlab/karyon",
+        "url": "https://github.com/Gabaldonlab/karyon",
+        "rel": "/software/repository/github/Gabaldonlab/karyon",
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+        "description": "This is the Karyon Pipeline",
         "topics": []
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-        "uid": "github/cbalbin-FIU/Epitopedia",
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-        "description": "Epitopedia: identifying molecular mimicry of known immune epitopes",
+        "uid": "github/Gabaldonlab/jloh",
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+        "rel": "/software/repository/github/Gabaldonlab/jloh",
+        "avatar": "https://avatars.githubusercontent.com/u/9263059?v=4",
+        "description": "A tool to extract LOH blocks from VCF, BAM and FASTA data",
         "topics": [
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             "bioinformatics",
-            "computational-biology",
-            "structural-biology",
-            "molecular-mimicry",
-            "epitopes",
-            "iedb",
-            "pdb",
-            "drug-repurposing"
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-        "description": "Another Gtf/Gff Analysis Toolkit",
+        "uid": "github/PathwayCommons/grounding-search",
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+        "description": "A biological entity grounding search service ",
         "topics": [
-            "agat",
-            "gff",
-            "perl-scripts",
-            "gtf",
-            "standardisation",
-            "gff-format",
-            "toolkit"
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+        "description": "Chimeric Read Annotator",
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-        "description": "Subsetting tools and utilities for ParFlow hydrological modeling",
+        "uid": "github/MBoemo/DNAscent",
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+        "description": "Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.",
         "topics": []
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+        "description": "Yet another Hi-C scaffolding tool",
         "topics": []
     },
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-        "uid": "github/IonRepo/IonDiff",
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-        "description": "Unsupervised identification and analysis of ion-hopping events in solid state electrolytes.",
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+        "description": "A CUDA-accelerated 2D code for protoplanetary disc evolution simulations",
         "topics": []
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-        "description": "A Python version of KinMS (github.com/TimothyADavis/KinMS)",
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+        "description": "Version 1.0 of the CrowdTruth Framework for crowdsourcing ground truth data, for training and evaluation of cognitive computing systems. Check out also version 2.0 at https://github.com/CrowdTruth/CrowdTruth-core. Data collected with CrowdTruth methodology: http://data.crowdtruth.org/. Our papers: http://crowdtruth.org/papers/",
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-        "description": "Implementation of a Python MCMC gibbs-sampler with adaptive stepping",
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+        "description": "Fully automated Gaussian decomposition package for emission line spectra",
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         "topics": []
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-            "pipeline",
-            "snakemake",
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-            "reproducibility"
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+        "description": "Companion Analysis and Non-Detection in Interferometric Data",
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-        "avatar": "https://avatars.githubusercontent.com/u/6482905?v=4",
-        "description": "Pipeline for analysis of Dropseq single cell data",
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+        "url": "https://github.com/teuben/nemo",
+        "rel": "/software/repository/github/teuben/nemo",
+        "avatar": "https://avatars.githubusercontent.com/u/3393049?v=4",
+        "description": "a Stellar Dynamics Toolbox (Not Everybody Must Observe)",
         "topics": [
-            "dropseq",
-            "single-cell-rna-seq",
-            "snakemake-workflows",
-            "guix"
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+            "image-analysis",
+            "orbital-simulation",
+            "fits-files",
+            "tabular-data",
+            "nbody-gravity"
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-        "description": "Pipeline to recover astrometry and photometry of Solar System Objects in imaging surveys",
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+        "description": "Quick Array Combinations:  front end to CASA to run tp2vis, feather and various array combination methods",
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-        "description": "Create and extract conda packages of various formats",
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-        "description": "Python bindings to picosat (a SAT solver)",
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-        "description": "OS-agnostic, system-level binary package manager and ecosystem",
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+        "description": "An R Package to Fit and Tune to Models to Detect Treatment Effect Heterogeneity ",
         "topics": [
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-        "description": "Full Frame Fotometry from the Kepler Full Frame Images",
+        "uid": "github/jls713/tact",
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+        "description": "Monte Carlo N-body Simulation for Self-Interacting Dark Matter",
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-        "description": "Workflow for whole genome sequencing based phylogeny of Illumina and ONT R9/R10 data.",
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-            "hut23-96",
-            "computer-vision",
-            "deep-learning",
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-            "digital-humanities",
-            "maps",
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-        "description": " THIS CODE IS HERE FOR ARCHIVAL PURPOSES AND IS NOT MAINTAINED",
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-        "description": "BAyesian COsmological Network - a bayesian neural network for classification of dark energy/modified gravity power spectra",
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+        "description": "A software for calculating telomere length",
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-        "description": "Library of tools used to support spatial analyses of solar energy",
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+        "description": "Extraction pipeline and analysis tools for Aperture Masking Interferometry mode of the last generation of instruments (ground-based and space).",
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+        "description": "A Python package for analyzing the Hofstadter model.",
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+        "description": "Multiprocessing Peak Picking Software for UCSF NMR Spectra",
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-        "description": "A multi-planet Radial Velocity and Transit modelling software",
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+        "avatar": "https://avatars.githubusercontent.com/u/22961411?v=4",
+        "description": "FDR/PEP estimation for MHC-peptide binding prediction",
         "topics": []
     },
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-        "uid": "github/SuLab/Wikidata-phenomizer",
-        "url": "https://github.com/SuLab/Wikidata-phenomizer",
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-        "avatar": "https://avatars3.githubusercontent.com/u/1891115?v=4",
-        "description": "Incorporate wikidata statements into phenomizer",
+        "uid": "github/RoryChenXY/DataRepExp_public",
+        "url": "https://github.com/RoryChenXY/DataRepExp_public",
+        "rel": "/software/repository/github/RoryChenXY/DataRepExp_public",
+        "avatar": "https://avatars.githubusercontent.com/u/30110719?v=4",
+        "description": "A shiny app that was developed to improve the FAIR of research data hosted on data repository.",
         "topics": []
     },
     {
-        "uid": "github/JIBSIL/DistriFS",
-        "url": "https://github.com/JIBSIL/DistriFS",
-        "rel": "/software/repository/github/JIBSIL/DistriFS",
-        "avatar": "https://avatars.githubusercontent.com/u/40243545?v=4",
-        "description": "Distributed, efficient and secure filesystem coded in Go",
+        "uid": "github/rhysf/HaplotypeTools",
+        "url": "https://github.com/rhysf/HaplotypeTools",
+        "rel": "/software/repository/github/rhysf/HaplotypeTools",
+        "avatar": "https://avatars.githubusercontent.com/u/3695082?v=4",
+        "description": "A toolkit for identifying recombination and recombinant genotypes",
         "topics": []
     },
     {
-        "uid": "github/ivastar/clear",
-        "url": "https://github.com/ivastar/clear",
-        "rel": "/software/repository/github/ivastar/clear",
-        "avatar": "https://avatars.githubusercontent.com/u/4562253?v=4",
-        "description": "Library for the CLEAR collaboration codebase.",
+        "uid": "github/egonw/bacting",
+        "url": "https://github.com/egonw/bacting",
+        "rel": "/software/repository/github/egonw/bacting",
+        "avatar": "https://avatars.githubusercontent.com/u/26721?v=4",
+        "description": "Bacting := acting as the Bioclipse TNG",
+        "topics": [
+            "cheminformatics",
+            "bioinformatics",
+            "rdf",
+            "bioclipse",
+            "excel",
+            "blueobelisk"
+        ]
+    },
+    {
+        "uid": "github/s-abbas/robnptests",
+        "url": "https://github.com/s-abbas/robnptests",
+        "rel": "/software/repository/github/s-abbas/robnptests",
+        "avatar": "https://avatars.githubusercontent.com/u/10209088?v=4",
+        "description": "Robust two-sample tests for the location problem",
         "topics": []
     },
     {
-        "uid": "github/mpokorny/vysmaw",
-        "url": "https://github.com/mpokorny/vysmaw",
-        "rel": "/software/repository/github/mpokorny/vysmaw",
-        "avatar": "https://avatars.githubusercontent.com/u/794498?v=4",
-        "description": "Fast visibility stream muncher",
-        "topics": [
-            "cython",
-            "infiniband",
-            "data-stream",
-            "spectra",
-            "c",
-            "correlators"
-        ]
+        "uid": "github/bregaldo/pywst",
+        "url": "https://github.com/bregaldo/pywst",
+        "rel": "/software/repository/github/bregaldo/pywst",
+        "avatar": "https://avatars.githubusercontent.com/u/30353945?v=4",
+        "description": "Python package for WST and RWST analyses of astrophysical data.",
+        "topics": []
     },
     {
-        "uid": "github/pkugyf/MST",
-        "url": "https://github.com/pkugyf/MST",
-        "rel": "/software/repository/github/pkugyf/MST",
-        "avatar": "https://avatars.githubusercontent.com/u/31844573?v=4",
-        "description": null,
+        "uid": "github/cistrome/MIRA",
+        "url": "https://github.com/cistrome/MIRA",
+        "rel": "/software/repository/github/cistrome/MIRA",
+        "avatar": "https://avatars.githubusercontent.com/u/92589386?v=4",
+        "description": "Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.",
         "topics": []
     },
     {
-        "uid": "github/BGI-Qingdao/TGS-GapCloser",
-        "url": "https://github.com/BGI-Qingdao/TGS-GapCloser",
-        "rel": "/software/repository/github/BGI-Qingdao/TGS-GapCloser",
-        "avatar": "https://avatars.githubusercontent.com/u/39953106?v=4",
-        "description": "A gap-closing software tool that uses long reads to enhance genome assembly.",
+        "uid": "github/lijing28101/maize_pyrpipe",
+        "url": "https://github.com/lijing28101/maize_pyrpipe",
+        "rel": "/software/repository/github/lijing28101/maize_pyrpipe",
+        "avatar": "https://avatars.githubusercontent.com/u/22349573?v=4",
+        "description": null,
         "topics": []
     },
     {
-        "uid": "github/Yu606/odyssey",
-        "url": "https://github.com/Yu606/odyssey",
-        "rel": "/software/repository/github/Yu606/odyssey",
-        "avatar": "https://avatars.githubusercontent.com/u/31619679?v=4",
+        "uid": "github/tahirulqamar/Deep-HPI-pred",
+        "url": "https://github.com/tahirulqamar/Deep-HPI-pred",
+        "rel": "/software/repository/github/tahirulqamar/Deep-HPI-pred",
+        "avatar": "https://avatars.githubusercontent.com/u/44988308?v=4",
         "description": null,
         "topics": []
     },
     {
-        "uid": "github/undark-lab/swyft",
-        "url": "https://github.com/undark-lab/swyft",
-        "rel": "/software/repository/github/undark-lab/swyft",
-        "avatar": "https://avatars.githubusercontent.com/u/75046902?v=4",
-        "description": "Truncated marginal neural ratio estimation estimation with PyTorch.",
+        "uid": "github/changhoonhahn/provabgs",
+        "url": "https://github.com/changhoonhahn/provabgs",
+        "rel": "/software/repository/github/changhoonhahn/provabgs",
+        "avatar": "https://avatars.githubusercontent.com/u/1895640?v=4",
+        "description": "PRObabilistic Value-Added Bright Galaxy Survey (PROVABGS)",
+        "topics": []
+    },
+    {
+        "uid": "github/changhoonhahn/haloflow",
+        "url": "https://github.com/changhoonhahn/haloflow",
+        "rel": "/software/repository/github/changhoonhahn/haloflow",
+        "avatar": "https://avatars.githubusercontent.com/u/1895640?v=4",
+        "description": "Simulation-Based Inference (SBI) using forward modeled galaxy photometry",
+        "topics": []
+    },
+    {
+        "uid": "github/changhoonhahn/pySpectrum",
+        "url": "https://github.com/changhoonhahn/pySpectrum",
+        "rel": "/software/repository/github/changhoonhahn/pySpectrum",
+        "avatar": "https://avatars.githubusercontent.com/u/1895640?v=4",
+        "description": "python package to measure power spectrum and bispectrum",
         "topics": [
-            "pytorch",
-            "python",
-            "simulation-based",
-            "inference"
+            "cosmology",
+            "astrostatistics"
         ]
     },
     {
-        "uid": "github/undark-lab/albatross",
-        "url": "https://github.com/undark-lab/albatross",
-        "rel": "/software/repository/github/undark-lab/albatross",
-        "avatar": "https://avatars.githubusercontent.com/u/75046902?v=4",
-        "description": "A simulation-based Inference (SBI) library designed to perform analysis on stellar streams in the Milky Way",
+        "uid": "github/materialsproject/pymatgen-analysis-defects",
+        "url": "https://github.com/materialsproject/pymatgen-analysis-defects",
+        "rel": "/software/repository/github/materialsproject/pymatgen-analysis-defects",
+        "avatar": "https://avatars.githubusercontent.com/u/867057?v=4",
+        "description": "Defect analysis modules for pymatgen",
         "topics": []
     },
     {
-        "uid": "github/undark-lab/sstrax",
-        "url": "https://github.com/undark-lab/sstrax",
-        "rel": "/software/repository/github/undark-lab/sstrax",
-        "avatar": "https://avatars.githubusercontent.com/u/75046902?v=4",
-        "description": "A jax-accelerated modelling code for Milky Way stellar streams",
+        "uid": "github/trichter/yam",
+        "url": "https://github.com/trichter/yam",
+        "rel": "/software/repository/github/trichter/yam",
+        "avatar": "https://avatars.githubusercontent.com/u/2046150?v=4",
+        "description": "Yet another monitoring tool using correlations of ambient noise",
         "topics": []
     },
     {
-        "uid": "github/theGreatHerrLebert/rustims",
-        "url": "https://github.com/theGreatHerrLebert/rustims",
-        "rel": "/software/repository/github/theGreatHerrLebert/rustims",
-        "avatar": "https://avatars.githubusercontent.com/u/32388991?v=4",
-        "description": "A Framework for IMS-MS Raw Data Processing written in Rust and Python.",
-        "topics": [
-            "bottom-up",
-            "data-independent-acquisition",
-            "high-throughput",
-            "ion-mobility-spectrometry",
-            "omics",
-            "proteomics",
-            "pyo3",
-            "python",
-            "rust-lang",
-            "timstof",
-            "raw-data",
-            "mass-spectrometry"
-        ]
+        "uid": "github/pec27/smerfs",
+        "url": "https://github.com/pec27/smerfs",
+        "rel": "/software/repository/github/pec27/smerfs",
+        "avatar": "https://avatars.githubusercontent.com/u/2505317?v=4",
+        "description": "Creating large realisations of random fields on the sphere",
+        "topics": []
     },
     {
-        "uid": "github/jonathansick/skyoffset",
-        "url": "https://github.com/jonathansick/skyoffset",
-        "rel": "/software/repository/github/jonathansick/skyoffset",
-        "avatar": "https://avatars.githubusercontent.com/u/349384?v=4",
-        "description": "Sky offset optimization and mosaicing toolkit used by ANDROIDS",
+        "uid": "github/pec27/lizard",
+        "url": "https://github.com/pec27/lizard",
+        "rel": "/software/repository/github/pec27/lizard",
+        "avatar": "https://avatars.githubusercontent.com/u/2505317?v=4",
+        "description": "lizard is an open-source code for the creation of particle initial conditions for cosmological simulations",
         "topics": []
     },
     {
-        "uid": "github/jonathansick/starfish",
-        "url": "https://github.com/jonathansick/starfish",
-        "rel": "/software/repository/github/jonathansick/starfish",
-        "avatar": "https://avatars.githubusercontent.com/u/349384?v=4",
-        "description": "GitHub StarFISH mirror (with patches)",
+        "uid": "github/pec27/hfof",
+        "url": "https://github.com/pec27/hfof",
+        "rel": "/software/repository/github/pec27/hfof",
+        "avatar": "https://avatars.githubusercontent.com/u/2505317?v=4",
+        "description": "Friends-of-Friends via spatial hashing",
         "topics": []
     },
     {
-        "uid": "github/jonathansick/MoAstro",
-        "url": "https://github.com/jonathansick/MoAstro",
-        "rel": "/software/repository/github/jonathansick/MoAstro",
-        "avatar": "https://avatars.githubusercontent.com/u/349384?v=4",
-        "description": "MongoDB framework for observational astronomy",
-        "topics": []
+        "uid": "github/Vini2/GraphBin",
+        "url": "https://github.com/metagentools/GraphBin",
+        "rel": "/software/repository/github/Vini2/GraphBin",
+        "avatar": "https://avatars.githubusercontent.com/u/105288780?v=4",
+        "description": "GraphBin: Refined binning of metagenomic contigs using assembly graphs",
+        "topics": [
+            "metagenomics",
+            "binning",
+            "contigs",
+            "assembly-graph",
+            "label-propagation"
+        ]
     },
     {
-        "uid": "github/AemulusProject/bias_emulator",
-        "url": "https://github.com/AemulusProject/bias_emulator",
-        "rel": "/software/repository/github/AemulusProject/bias_emulator",
-        "avatar": "https://avatars.githubusercontent.com/u/38292013?v=4",
-        "description": "Emulator for the halo bias from The Aemulus Project.",
-        "topics": []
+        "uid": "github/cmbant/getdist",
+        "url": "https://github.com/cmbant/getdist",
+        "rel": "/software/repository/github/cmbant/getdist",
+        "avatar": "https://avatars.githubusercontent.com/u/3958819?v=4",
+        "description": "MCMC sample analysis, kernel densities, plotting, and GUI",
+        "topics": [
+            "kernel-density-estimation",
+            "plotting-in-python",
+            "mcmc",
+            "statistical-inference",
+            "contour-plot",
+            "sampling-methods"
+        ]
     },
     {
-        "uid": "github/davidharvey1986/pyRRG",
-        "url": "https://github.com/davidharvey1986/pyRRG",
-        "rel": "/software/repository/github/davidharvey1986/pyRRG",
-        "avatar": "https://avatars.githubusercontent.com/u/2930696?v=4",
-        "description": "pyRRG weak lensing shape measurement code. Measuring the 2nd and 4th order moments it uses a TinyTim model to correct for PSF distortions. It is invariant to number exposures, ortientation of the drizzle images. Using a machine learning algorithm it automatically star and galaxy classifies, howeve the user is able to do this manually if not accurate enough. For more see https://arxiv.org/abs/astro-ph/9905090. For bugs please report them to https://github.com/davidharvey1986/pyRRG or contact harvey@lorentz.leidenuniv.nl",
-        "topics": []
+        "uid": "github/qMRLab/qMRLab",
+        "url": "https://github.com/qMRLab/qMRLab",
+        "rel": "/software/repository/github/qMRLab/qMRLab",
+        "avatar": "https://avatars3.githubusercontent.com/u/42773796?v=4",
+        "description": "Quantitative Magnetic Resonance Imaging Made Easy with qMRLab: a Software for Data Simulation, Analysis and Visualization",
+        "topics": [
+            "mri",
+            "analysis",
+            "data-simulation",
+            "quantitative",
+            "magnetization",
+            "relaxometry",
+            "mapping"
+        ]
     },
     {
-        "uid": "github/nmfs-fish-tools/ssmse",
-        "url": "https://github.com/nmfs-fish-tools/SSMSE",
-        "rel": "/software/repository/github/nmfs-fish-tools/ssmse",
-        "avatar": "https://avatars.githubusercontent.com/u/49072821?v=4",
-        "description": "Management Strategy Evaluation (MSE) using Stock Synthesis (SS3)",
+        "uid": "github/nextgenusfs/amptk",
+        "url": "https://github.com/nextgenusfs/amptk",
+        "rel": "/software/repository/github/nextgenusfs/amptk",
+        "avatar": "https://avatars.githubusercontent.com/u/6164308?v=4",
+        "description": "AMPtk: Amplicon ToolKit for NGS data (formally UFITS)",
         "topics": [
-            "stock-synthesis"
+            "amplicons",
+            "microbiome",
+            "mycobiome",
+            "next-generation-sequencing",
+            "fungi",
+            "rdna",
+            "coi",
+            "lsu",
+            "co1",
+            "mtco1"
         ]
     },
     {
-        "uid": "github/dglaeser/gridformat",
-        "url": "https://github.com/dglaeser/gridformat",
-        "rel": "/software/repository/github/dglaeser/gridformat",
-        "avatar": "https://avatars.githubusercontent.com/u/49902895?v=4",
-        "description": "Header-only C++-Library for grid file I/O",
+        "uid": "github/nextgenusfs/funannotate",
+        "url": "https://github.com/nextgenusfs/funannotate",
+        "rel": "/software/repository/github/nextgenusfs/funannotate",
+        "avatar": "https://avatars.githubusercontent.com/u/6164308?v=4",
+        "description": "Eukaryotic Genome Annotation Pipeline",
         "topics": [
-            "computational-grid",
-            "input-output",
-            "numerical-modeling",
-            "simulation"
+            "genome-annotation",
+            "gene-models",
+            "comparative-genomics",
+            "ncbi-submission"
         ]
     },
     {
-        "uid": "github/tcallister/autoregressive-bbh-inference",
-        "url": "https://github.com/tcallister/autoregressive-bbh-inference",
-        "rel": "/software/repository/github/tcallister/autoregressive-bbh-inference",
-        "avatar": "https://avatars.githubusercontent.com/u/11800515?v=4",
-        "description": "This repository holds code and data release products behind the paper \"A parameter-free tour of the binary black hole population\"",
-        "topics": []
+        "uid": "github/thieu1995/permetrics",
+        "url": "https://github.com/thieu1995/permetrics",
+        "rel": "/software/repository/github/thieu1995/permetrics",
+        "avatar": "https://avatars.githubusercontent.com/u/12763861?v=4",
+        "description": "Artificial intelligence (AI, ML, DL) performance metrics implemented in Python",
+        "topics": [
+            "coefficient-of-determination",
+            "rmse",
+            "mae",
+            "performance-metrics",
+            "symmetric-mean-absolute-percentage",
+            "nash-sutcliffe-efficiency",
+            "willmott-index",
+            "relative-error",
+            "regression-methods",
+            "classification-report",
+            "clustering-evaluation",
+            "kling-gupta-efficiency",
+            "deviation-of-runoff-volume",
+            "evaluation-metrics",
+            "regression",
+            "classification"
+        ]
     },
     {
-        "uid": "github/V-Bernal/GeneNetTools",
-        "url": "https://github.com/V-Bernal/GeneNetTools",
-        "rel": "/software/repository/github/V-Bernal/GeneNetTools",
-        "avatar": "https://avatars.githubusercontent.com/u/44974039?v=4",
-        "description": "R package for Gaussian graphical models with (Ledoit Wolf) shrinkage ",
+        "uid": "github/FelixKrueger/TrimGalore",
+        "url": "https://github.com/FelixKrueger/TrimGalore",
+        "rel": "/software/repository/github/FelixKrueger/TrimGalore",
+        "avatar": "https://avatars.githubusercontent.com/u/5870509?v=4",
+        "description": "A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data",
         "topics": []
     },
     {
-        "uid": "github/jeancmaia/mcglm",
-        "url": "https://github.com/jeancmaia/mcglm",
-        "rel": "/software/repository/github/jeancmaia/mcglm",
-        "avatar": "https://avatars.githubusercontent.com/u/33667670?v=4",
-        "description": "Python Framework for Multivariate Covariance Generalized Linear Models ",
+        "uid": "github/cmoestl/3DCORE",
+        "url": "https://github.com/cmoestl/3DCORE",
+        "rel": "/software/repository/github/cmoestl/3DCORE",
+        "avatar": "https://avatars.githubusercontent.com/u/14162616?v=4",
+        "description": "3D coronal mass ejection flux rope modeling",
         "topics": [
-            "statistical-inference",
-            "statistical-models",
-            "data-science",
-            "python"
+            "heliophysics",
+            "spaceweather",
+            "spacephysics",
+            "solarwind"
         ]
     },
     {
-        "uid": "github/jimmink/argslab",
-        "url": "https://github.com/jimmink/argslab",
-        "rel": "/software/repository/github/jimmink/argslab",
-        "avatar": "https://avatars.githubusercontent.com/u/80682535?v=4",
-        "description": "Repository for ArGSLab, Arrested and Gelated Structures Laboratory.",
+        "uid": "github/scipion-em/scipion-em-continuousflex",
+        "url": "https://github.com/scipion-em/scipion-em-continuousflex",
+        "rel": "/software/repository/github/scipion-em/scipion-em-continuousflex",
+        "avatar": "https://avatars.githubusercontent.com/u/41120294?v=4",
+        "description": "Plugin for continuous conformational flexibility analysis containing HEMNMA, StructMap, HEMNMA-3D and TomoFlow for in vitro and in situ cryo-EM/ET.",
         "topics": []
     },
     {
-        "uid": "github/afarahi/PoPE",
-        "url": "https://github.com/afarahi/PoPE",
-        "rel": "/software/repository/github/afarahi/PoPE",
-        "avatar": "https://avatars.githubusercontent.com/u/1308461?v=4",
-        "description": "Population Profile Estimator",
-        "topics": []
+        "uid": "github/SpaceOdyssey/Blobby3D",
+        "url": "https://github.com/SpaceOdyssey/Blobby3D",
+        "rel": "/software/repository/github/SpaceOdyssey/Blobby3D",
+        "avatar": "https://avatars.githubusercontent.com/u/20017927?v=4",
+        "description": "Blobby3D is a tool to perform Bayesian inference for gas kinematics on emission line observations of galaxies using Integral Field Spectroscopy.",
+        "topics": [
+            "astrophysics",
+            "bayesian-inference",
+            "spectroscopy"
+        ]
     },
     {
-        "uid": "github/afarahi/tatter",
-        "url": "https://github.com/afarahi/tatter",
-        "rel": "/software/repository/github/afarahi/tatter",
-        "avatar": "https://avatars.githubusercontent.com/u/1308461?v=4",
-        "description": "TATTER (Two-sAmple TesT EstimatoR) is a tool to perform two-sample hypothesis test.",
+        "uid": "github/Hoohm/CITE-seq-Count",
+        "url": "https://github.com/Hoohm/CITE-seq-Count",
+        "rel": "/software/repository/github/Hoohm/CITE-seq-Count",
+        "avatar": "https://avatars.githubusercontent.com/u/1267560?v=4",
+        "description": "A tool that allows to get UMI counts from a single cell protein assay",
         "topics": [
-            "kullback-leibler-divergence",
-            "mmd",
-            "two-sample-test",
-            "two-sample-statistics",
-            "posterior-predictive"
+            "single-cell",
+            "citeseq",
+            "10x",
+            "dropseq"
         ]
     },
     {
-        "uid": "github/afarahi/kllr",
-        "url": "https://github.com/afarahi/kllr",
-        "rel": "/software/repository/github/afarahi/kllr",
-        "avatar": "https://avatars.githubusercontent.com/u/1308461?v=4",
-        "description": "Kernel Localized Linear Regression (KLLR)",
+        "uid": "github/luizfelippesr/magnetizer",
+        "url": "https://github.com/luizfelippesr/magnetizer",
+        "rel": "/software/repository/github/luizfelippesr/magnetizer",
+        "avatar": "https://avatars.githubusercontent.com/u/11710467?v=4",
+        "description": "Magnetizer - A Fortran code that post-processes the output of a semi-analytic model of galaxy formation and produces a catalogue of galaxies with detailed radial dependent ISM properties, including magnetic fields",
         "topics": [
-            "linear-regression",
-            "linear-model",
-            "kernel-methods",
-            "regression",
-            "localized-linear-regression"
+            "astrophysics",
+            "mean-field-dynamo",
+            "galaxies",
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-        "avatar": "https://avatars.githubusercontent.com/u/26575754?v=4",
-        "description": "Fully automated Gaussian decomposition package for emission line spectra",
+        "uid": "github/JuliaDynamics/DrWatson.jl",
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+        "avatar": "https://avatars1.githubusercontent.com/u/31774341?v=4",
+        "description": "The perfect sidekick to your scientific inquiries",
         "topics": [
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-            "python-packages",
-            "spectra"
+            "science",
+            "science-research",
+            "project-management",
+            "project-assistant",
+            "simulations",
+            "setup-tool"
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-        "uid": "github/mathLab/PINA",
-        "url": "https://github.com/mathLab/PINA",
-        "rel": "/software/repository/github/mathLab/PINA",
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-        "description": "Physics-Informed Neural networks for Advanced modeling",
+        "uid": "github/JuliaDynamics/TransitionsInTimeseries.jl",
+        "url": "https://github.com/JuliaDynamics/TransitionsInTimeseries.jl",
+        "rel": "/software/repository/github/JuliaDynamics/TransitionsInTimeseries.jl",
+        "avatar": "https://avatars.githubusercontent.com/u/31774341?v=4",
+        "description": "Transition Indicators / Early Warning Signals / Regime Shifts / Change Point Detection",
         "topics": [
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-            "modeling",
-            "machine-learning",
-            "deep-learning",
-            "python",
-            "pytorch",
-            "differential-equations",
-            "neural-network",
-            "ode",
-            "pde",
-            "physics-informed",
+            "critical-transitions",
+            "early-warning-signals",
+            "nonlinear-dynamics",
+            "nonlinear-timeseries-analysis",
+            "tipping-points",
             "hacktoberfest",
-            "lightining",
-            "pinn"
+            "change-point-detection",
+            "critical-slowing-down",
+            "resilience-loss"
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-        "uid": "github/FZJ-IEK3-VSA/ETHOS_PeNALPS",
-        "url": "https://github.com/FZJ-IEK3-VSA/ETHOS_PeNALPS",
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-        "avatar": "https://avatars.githubusercontent.com/u/28654423?v=4",
-        "description": "Petri Net Agent based Load Profile Simulator",
-        "topics": []
+        "uid": "github/TRACER-LULab/Hyperelastics.jl",
+        "url": "https://github.com/TRACER-LULab/Hyperelastics.jl",
+        "rel": "/software/repository/github/TRACER-LULab/Hyperelastics.jl",
+        "avatar": "https://avatars.githubusercontent.com/u/75383514?v=4",
+        "description": "Hyperelastic Material modelling with support for Automatic Differentiation",
+        "topics": [
+            "finite-element-methods",
+            "hyperelasticity",
+            "material-model"
+        ]
     },
     {
-        "uid": "github/FZJ-IEK3-VSA/LoadProfileGenerator",
-        "url": "https://github.com/FZJ-IEK3-VSA/LoadProfileGenerator",
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-        "avatar": "https://avatars.githubusercontent.com/u/28654423?v=4",
-        "description": "Program for generating load curves for residential consumers. Agentbased and extremly detailed.",
+        "uid": "github/ranieremenezes/easyFermi",
+        "url": "https://github.com/ranieremenezes/easyFermi",
+        "rel": "/software/repository/github/ranieremenezes/easyFermi",
+        "avatar": "https://avatars.githubusercontent.com/u/14879409?v=4",
+        "description": "The easiest way to analyze Fermi-LAT data",
         "topics": []
     },
     {
-        "uid": "github/fwhigh/stellar-locus-regression",
-        "url": "https://github.com/fwhigh/stellar-locus-regression",
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-        "avatar": "https://avatars.githubusercontent.com/u/3476531?v=4",
-        "description": "Automatically exported from code.google.com/p/stellar-locus-regression",
+        "uid": "github/ranieremenezes/easyspec",
+        "url": "https://github.com/ranieremenezes/easyspec",
+        "rel": "/software/repository/github/ranieremenezes/easyspec",
+        "avatar": "https://avatars.githubusercontent.com/u/14879409?v=4",
+        "description": "The easiest way to do long-slit optical spectroscopy",
         "topics": []
     },
     {
-        "uid": "github/SebOliver/PCA",
-        "url": "https://github.com/SebOliver/PCA",
-        "rel": "/software/repository/github/SebOliver/PCA",
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-        "description": "The folders in this file are those discussed in the paper: \"Principal Component Analysis and Radiative Transfer modelling of Spitzer IRS Spectra of Ultra Luminous Infrared Galaxies \" Hurley et al. 2012 Monthly Notices of the Royal Astronomical Society, 424 (3). pp. 2069-2078. ISSN 0035-8711 ",
+        "uid": "github/barnabytprowe/imcom",
+        "url": "https://github.com/barnabytprowe/imcom",
+        "rel": "/software/repository/github/barnabytprowe/imcom",
+        "avatar": "https://avatars.githubusercontent.com/u/1454961?v=4",
+        "description": "Public repository for the IMCOM (IMage COMbination) software described in Rowe, Hirata & Rhodes (2011)",
         "topics": []
     },
     {
-        "uid": "github/pierrehoudayer/RUBIS",
-        "url": "https://github.com/pierrehoudayer/RUBIS",
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-        "avatar": "https://avatars.githubusercontent.com/u/91544829?v=4",
-        "description": "Rotation code Using Barotropy conservation over Isopotential Surfaces (RUBIS)",
+        "uid": "github/andizq/sf3dmodels",
+        "url": "https://github.com/andizq/sf3dmodels",
+        "rel": "/software/repository/github/andizq/sf3dmodels",
+        "avatar": "https://avatars.githubusercontent.com/u/33854784?v=4",
+        "description": "sf3dmodels: star-forming regions 3D modelling package in Python :partly_sunny:",
         "topics": []
     },
     {
-        "uid": "github/ngltr/sinaps",
-        "url": "https://github.com/ngltr/sinaps",
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-        "avatar": "https://avatars.githubusercontent.com/u/49352943?v=4",
-        "description": null,
-        "topics": []
+        "uid": "github/hombit/freddi",
+        "url": "https://github.com/hombit/freddi",
+        "rel": "/software/repository/github/hombit/freddi",
+        "avatar": "https://avatars.githubusercontent.com/u/1784493?v=4",
+        "description": "Compute FRED light curves of LMXBs outbursts",
+        "topics": [
+            "accretion-disks",
+            "astrophysics",
+            "x-ray-binaries",
+            "fred",
+            "science",
+            "lmxb"
+        ]
     },
     {
-        "uid": "github/LDEO-CREW/Pythonic-DISORT",
-        "url": "https://github.com/LDEO-CREW/Pythonic-DISORT",
-        "rel": "/software/repository/github/LDEO-CREW/Pythonic-DISORT",
-        "avatar": "https://avatars.githubusercontent.com/u/112423107?v=4",
-        "description": "Discrete Ordinates Solver for the (1D) Radiative Transfer Equation in a single or multi-layer plane-parallel atmosphere. Coded entirely in Python 3. Based on Stamnes' FORTRAN DISORT (see references in the Jupyter Notebook) and has its main features.",
+        "uid": "github/Materials-Consortia/OPTIMADE-Filter",
+        "url": "https://github.com/Materials-Consortia/OPTIMADE-Filter",
+        "rel": "/software/repository/github/Materials-Consortia/OPTIMADE-Filter",
+        "avatar": "https://avatars.githubusercontent.com/u/23107754?v=4",
+        "description": "OPTIMADE filter language parser in Perl",
         "topics": [
-            "atmospheric-modelling",
-            "discrete-ordinates-method",
-            "disort",
-            "python",
-            "radiative-transfer",
-            "radiative-transfer-models"
+            "perl5",
+            "optimade",
+            "parser"
         ]
     },
     {
-        "uid": "github/privong/pyMCspearman",
-        "url": "https://github.com/privong/pyMCSpearman",
-        "rel": "/software/repository/github/privong/pyMCspearman",
-        "avatar": "https://avatars.githubusercontent.com/u/1630295?v=4",
-        "description": "Monte carlo calculation of Spearman's rank correlation coefficient with uncertainties. Following Curran (2014)",
+        "uid": "github/Materials-Consortia/optimade-python-tools",
+        "url": "https://github.com/Materials-Consortia/optimade-python-tools",
+        "rel": "/software/repository/github/Materials-Consortia/optimade-python-tools",
+        "avatar": "https://avatars.githubusercontent.com/u/23107754?v=4",
+        "description": "Tools for implementing and consuming OPTIMADE APIs in Python",
         "topics": [
-            "spearman-rho",
-            "bootstrapping-statistics",
-            "monte-carlo"
+            "optimade-specification",
+            "optimade-python",
+            "optimade-api",
+            "openapi",
+            "python"
         ]
     },
     {
-        "uid": "github/privong/pymccorrelation",
-        "url": "https://github.com/privong/pymccorrelation",
-        "rel": "/software/repository/github/privong/pymccorrelation",
-        "avatar": "https://avatars.githubusercontent.com/u/1630295?v=4",
-        "description": "Correlation coefficients with uncertainties",
+        "uid": "github/INRS-France/predicting_alarm_audibility",
+        "url": "https://github.com/INRS-France/predicting_alarm_audibility",
+        "rel": "/software/repository/github/INRS-France/predicting_alarm_audibility",
+        "avatar": "https://avatars.githubusercontent.com/u/157127585?v=4",
+        "description": "This Python code is derived from the research article \"Evaluating and Predicting the Audibility of Acoustic Alarms in the Workplace Using Experimental Methods and Deep Learning\" published in the journal Applied Acoustics. It provides a framework for predicting the audibility of acoustic alarms in noise, and includes scripts to reproduce the results",
         "topics": [
-            "bootstrapping-statistics",
-            "monte-carlo",
-            "correlation-coefficient"
+            "audibility",
+            "alarms",
+            "convolutional-neural-network",
+            "dataset",
+            "psychoacoustics",
+            "occupational-noise"
         ]
     },
     {
-        "uid": "github/rramadeu/AGHmatrix",
-        "url": "https://github.com/rramadeu/AGHmatrix",
-        "rel": "/software/repository/github/rramadeu/AGHmatrix",
-        "avatar": "https://avatars.githubusercontent.com/u/10066681?v=4",
-        "description": "An R package to compute relationship matrices for diploid and autopolyploid species",
+        "uid": "github/BattModels/asimtools",
+        "url": "https://github.com/BattModels/asimtools",
+        "rel": "/software/repository/github/BattModels/asimtools",
+        "avatar": "https://avatars.githubusercontent.com/u/64616036?v=4",
+        "description": "Optimized workflow management and script handling for atomistic simulations",
         "topics": []
     },
     {
-        "uid": "github/planck-npipe/hillipop",
-        "url": "https://github.com/planck-npipe/hillipop",
-        "rel": "/software/repository/github/planck-npipe/hillipop",
-        "avatar": "https://avatars.githubusercontent.com/u/75025933?v=4",
-        "description": "A cobaya high-ell likelihood polarized for planck 2020 data (NPIPE release)",
-        "topics": [
-            "cmb",
-            "likelihood",
-            "cobaya",
-            "planck"
-        ]
+        "uid": "github/r-cas/caracas",
+        "url": "https://github.com/r-cas/caracas",
+        "rel": "/software/repository/github/r-cas/caracas",
+        "avatar": "https://avatars.githubusercontent.com/u/58435783?v=4",
+        "description": "Computer algebra in R",
+        "topics": []
     },
     {
-        "uid": "github/planck-npipe/lollipop",
-        "url": "https://github.com/planck-npipe/lollipop",
-        "rel": "/software/repository/github/planck-npipe/lollipop",
-        "avatar": "https://avatars.githubusercontent.com/u/75025933?v=4",
-        "description": "A cobaya low-ell likelihood polarized for planck 2020 data (NPIPE release)",
+        "uid": "github/Schulik/aiolos",
+        "url": "https://github.com/Schulik/aiolos",
+        "rel": "/software/repository/github/Schulik/aiolos",
+        "avatar": "https://avatars.githubusercontent.com/u/72578233?v=4",
+        "description": "1-D hydrodynamics code for planetary atmosphere accretion and escape simulations",
         "topics": [
-            "cmb",
-            "likelihood",
-            "cobaya",
-            "planck"
+            "computational-fluid-dynamics",
+            "gas-dynamics",
+            "radiation-transport",
+            "reacting-flow-simulations"
         ]
     },
     {
-        "uid": "github/dpryan79/libBigWig",
-        "url": "https://github.com/dpryan79/libBigWig",
-        "rel": "/software/repository/github/dpryan79/libBigWig",
-        "avatar": "https://avatars.githubusercontent.com/u/6399000?v=4",
-        "description": "A C library for handling bigWig files",
-        "topics": [
-            "bigbed",
-            "bigwig",
-            "bioinformatics"
-        ]
+        "uid": "github/AP6YC/ClusterValidityIndices.jl",
+        "url": "https://github.com/AP6YC/ClusterValidityIndices.jl",
+        "rel": "/software/repository/github/AP6YC/ClusterValidityIndices.jl",
+        "avatar": "https://avatars.githubusercontent.com/u/17498866?v=4",
+        "description": "A Julia package for Cluster Validity Indices (CVIs).",
+        "topics": []
     },
     {
-        "uid": "github/dpryan79/pyBigWig",
-        "url": "https://github.com/deeptools/pyBigWig",
-        "rel": "/software/repository/github/dpryan79/pyBigWig",
-        "avatar": "https://avatars.githubusercontent.com/u/6528975?v=4",
-        "description": "A python extension for quick access to bigWig and bigBed files",
+        "uid": "github/AP6YC/AdaptiveResonance.jl",
+        "url": "https://github.com/AP6YC/AdaptiveResonance.jl",
+        "rel": "/software/repository/github/AP6YC/AdaptiveResonance.jl",
+        "avatar": "https://avatars.githubusercontent.com/u/17498866?v=4",
+        "description": "A Julia package for Adaptive Resonance Theory (ART) algorithms.",
         "topics": [
-            "bigwig",
-            "bioinfomatics",
-            "bigbed"
+            "julia",
+            "machine-learning"
         ]
     },
     {
-        "uid": "github/dpryan79/MethylDackel",
-        "url": "https://github.com/dpryan79/MethylDackel",
-        "rel": "/software/repository/github/dpryan79/MethylDackel",
-        "avatar": "https://avatars.githubusercontent.com/u/6399000?v=4",
-        "description": "A (mostly) universal methylation extractor for BS-seq experiments.",
+        "uid": "github/cran/irtplay",
+        "url": "https://github.com/cran/irtplay",
+        "rel": "/software/repository/github/cran/irtplay",
+        "avatar": "https://avatars.githubusercontent.com/u/6899542?v=4",
+        "description": ":exclamation:\u00a0This\u00a0is\u00a0a\u00a0read-only\u00a0mirror\u00a0of\u00a0the\u00a0CRAN\u00a0R\u00a0package\u00a0repository.  irtplay\u00a0\u2014\u00a0Unidimensional\u00a0Item\u00a0Response\u00a0Theory\u00a0Modeling.\u00a0Homepage:\u00a0https://github.com/hwangQ/irtplay  Report\u00a0bugs\u00a0for\u00a0this\u00a0package:\u00a0https://github.com/hwangQ/irtplay/issues",
+        "topics": []
+    },
+    {
+        "uid": "github/euclidlib/euclidlib",
+        "url": "https://github.com/euclidlib/euclidlib",
+        "rel": "/software/repository/github/euclidlib/euclidlib",
+        "avatar": "https://avatars.githubusercontent.com/u/160159153?v=4",
+        "description": "Unofficial python library for reading data products from the Euclid mission",
         "topics": [
-            "methylation",
-            "bioinformatics",
-            "methylation-extraction",
-            "bisulfite"
+            "cosmology",
+            "euclid",
+            "library",
+            "python"
         ]
     },
     {
-        "uid": "github/guynir42/radon",
-        "url": "https://github.com/guynir42/radon",
-        "rel": "/software/repository/github/guynir42/radon",
-        "avatar": "https://avatars.githubusercontent.com/u/37179063?v=4",
-        "description": "Streak detection using the Fast Radon Transform",
+        "uid": "github/mrteetoe/HOI",
+        "url": "https://github.com/mrteetoe/HOI",
+        "rel": "/software/repository/github/mrteetoe/HOI",
+        "avatar": "https://avatars.githubusercontent.com/u/29948143?v=4",
+        "description": null,
         "topics": []
     },
     {
-        "uid": "github/aobr/gsf",
-        "url": "https://github.com/aobr/gsf",
-        "rel": "/software/repository/github/aobr/gsf",
-        "avatar": "https://avatars.githubusercontent.com/u/7265091?v=4",
-        "description": "galactic structure finder",
+        "uid": "github/gridap/GridapSolvers.jl",
+        "url": "https://github.com/gridap/GridapSolvers.jl",
+        "rel": "/software/repository/github/gridap/GridapSolvers.jl",
+        "avatar": "https://avatars.githubusercontent.com/u/49163828?v=4",
+        "description": "Solvers and preconditioners for the Gridap ecosystem.",
         "topics": []
     },
     {
-        "uid": "github/microbioinformatic/Co-PATHOgenex",
-        "url": "https://github.com/microbioinformatic/Co-PATHOgenex",
-        "rel": "/software/repository/github/microbioinformatic/Co-PATHOgenex",
-        "avatar": "https://avatars.githubusercontent.com/u/38429110?v=4",
-        "description": "Supporting scripts and files for R shiny app Co-PATHOgenex",
-        "topics": []
+        "uid": "github/gridap/Gridap.jl",
+        "url": "https://github.com/gridap/Gridap.jl",
+        "rel": "/software/repository/github/gridap/Gridap.jl",
+        "avatar": "https://avatars0.githubusercontent.com/u/49163828?v=4",
+        "description": "Grid-based approximation of partial differential equations in Julia",
+        "topics": [
+            "julia",
+            "pdes",
+            "partial-differential-equations",
+            "finite-elements",
+            "numerical-methods",
+            "gridap"
+        ]
     },
     {
-        "uid": "github/AlphonsG/Rainbow-Optical-Flow-For-ALI",
-        "url": "https://github.com/AlphonsG/Rainbow-Optical-Flow-For-ALI",
-        "rel": "/software/repository/github/AlphonsG/Rainbow-Optical-Flow-For-ALI",
-        "avatar": "https://avatars.githubusercontent.com/u/45003643?v=4",
-        "description": "Repository for software detailed in 'Rainbow: Automated Air-Liquid Interface Cell Culture Analysis Using Deep Optical Flow' software paper. See Readme for more details.",
+        "uid": "github/nedtaylor/athena",
+        "url": "https://github.com/nedtaylor/athena",
+        "rel": "/software/repository/github/nedtaylor/athena",
+        "avatar": "https://avatars.githubusercontent.com/u/71959356?v=4",
+        "description": "A Fortran-based feed-forward neural network library. Whilst this library currently has a focus on 3D convolutional neural networks (CNNs), it can handle most standard hidden layer forms of neural networks, with the plan to integrate more.",
         "topics": [
-            "deep-learning",
-            "biology",
-            "image-analysis",
-            "bioinformatics",
-            "optical-flow",
-            "python",
-            "pytorch"
+            "convolution",
+            "feed-forward-neural-networks",
+            "fortran",
+            "machine-learning",
+            "neural-network",
+            "convolutional-neural-networks",
+            "cnn"
         ]
     },
     {
-        "uid": "github/weiliu123/PCLassoReg",
-        "url": "https://github.com/weiliu123/PCLassoReg",
-        "rel": "/software/repository/github/weiliu123/PCLassoReg",
-        "avatar": "https://avatars.githubusercontent.com/u/20275072?v=4",
+        "uid": "github/dusanmarceta/Synthetic-Population-of-Interstellar-Objects",
+        "url": "https://github.com/dusanmarceta/Synthetic-Population-of-Interstellar-Objects",
+        "rel": "/software/repository/github/dusanmarceta/Synthetic-Population-of-Interstellar-Objects",
+        "avatar": "https://avatars.githubusercontent.com/u/103255610?v=4",
         "description": null,
         "topics": []
     },
     {
-        "uid": "github/EMResearch/EvoMaster",
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-        "avatar": "https://avatars2.githubusercontent.com/u/29148026?v=4",
-        "description": "A tool for automatically generating system-level test cases. Currently targeting REST APIs.",
-        "topics": [
-            "testing",
-            "evolutionary-algorithms",
-            "rest",
-            "java",
-            "kotlin",
-            "test-case-generation",
-            "api-rest",
-            "api-testing"
-        ]
+        "uid": "github/dusanmarceta/Synthetic-Population-of-Interstellar-Obejcts",
+        "url": "https://github.com/dusanmarceta/Synthetic-Population-of-Interstellar-Obejcts",
+        "rel": "/software/repository/github/dusanmarceta/Synthetic-Population-of-Interstellar-Obejcts",
+        "avatar": "https://avatars.githubusercontent.com/u/103255610?v=4",
+        "description": null,
+        "topics": []
     },
     {
-        "uid": "github/CQCL/qujax",
-        "url": "https://github.com/CQCL/qujax",
-        "rel": "/software/repository/github/CQCL/qujax",
-        "avatar": "https://avatars.githubusercontent.com/u/15688781?v=4",
-        "description": "Simulating quantum circuits with JAX",
-        "topics": [
-            "jax",
-            "python",
-            "quantum"
-        ]
+        "uid": "github/xdqso/xdqso",
+        "url": "https://github.com/xdqso/xdqso",
+        "rel": "/software/repository/github/xdqso/xdqso",
+        "avatar": "https://avatars.githubusercontent.com/u/9202071?v=4",
+        "description": "Quasar classification with XD",
+        "topics": []
     },
     {
-        "uid": "github/YuSugihara/MutMap",
-        "url": "https://github.com/YuSugihara/MutMap",
-        "rel": "/software/repository/github/YuSugihara/MutMap",
-        "avatar": "https://avatars.githubusercontent.com/u/34593586?v=4",
-        "description": "MutMap pipeline to identify causative mutations responsible for a phenotype",
-        "topics": []
+        "uid": "github/range-et/PGL",
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+        "description": "Probabilistic Random Forest: A machine learning algorithm for noisy datasets",
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-        "uid": "github/su2code/SU2",
-        "url": "https://github.com/su2code/SU2",
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-        "description": "SU2: An Open-Source Suite for Multiphysics Simulation and Design",
+        "uid": "github/isoverse/isoreader",
+        "url": "https://github.com/isoverse/isoreader",
+        "rel": "/software/repository/github/isoverse/isoreader",
+        "avatar": "https://avatars.githubusercontent.com/u/47226588?v=4",
+        "description": "Read IRMS (Isotope Ratio Mass Spectrometry) data files into R",
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-            "python",
-            "opensource",
-            "physics",
-            "flow",
-            "fluid",
-            "fluid-dynamics",
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+            "isotopes",
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-        "uid": "github/xiaofengsong/pHisPred",
-        "url": "https://github.com/xiaofengsong/pHisPred",
-        "rel": "/software/repository/github/xiaofengsong/pHisPred",
-        "avatar": "https://avatars.githubusercontent.com/u/13796294?v=4",
-        "description": "A bioinformatic tool for identifying protein histidine phosphorylation sites",
+        "uid": "github/raufs/skDER",
+        "url": "https://github.com/raufs/skDER",
+        "rel": "/software/repository/github/raufs/skDER",
+        "avatar": "https://avatars.githubusercontent.com/u/4260723?v=4",
+        "description": "skDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and metagenomics. ",
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-        "uid": "github/djbard/ccogs",
-        "url": "https://github.com/djbard/ccogs",
-        "rel": "/software/repository/github/djbard/ccogs",
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-        "description": "Cosmological Calculations on GPUS. A collection of code used to perform calculations use in Cosmology studies and written for GPUs. ",
+        "uid": "github/gtw2i/GA-Galaxy",
+        "url": "https://github.com/gtw2i/GA-Galaxy",
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+        "avatar": "https://avatars.githubusercontent.com/u/20209148?v=4",
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-        "uid": "github/PIK-LPJmL/lpjmlkit",
-        "url": "https://github.com/PIK-LPJmL/lpjmlkit",
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+        "uid": "github/cnsetzer/kilopop",
+        "url": "https://github.com/cnsetzer/kilopop",
+        "rel": "/software/repository/github/cnsetzer/kilopop",
+        "avatar": "https://avatars.githubusercontent.com/u/32570203?v=4",
+        "description": "Binary neutron star (BNS) population of optical kilonovae (kNe).",
+        "topics": []
+    },
+    {
+        "uid": "github/ECP-WarpX/WarpX",
+        "url": "https://github.com/ECP-WarpX/WarpX",
+        "rel": "/software/repository/github/ECP-WarpX/WarpX",
+        "avatar": "https://avatars.githubusercontent.com/u/32690356?v=4",
+        "description": "WarpX is an advanced, time-based electromagnetic & electrostatic Particle-In-Cell code.",
         "topics": [
-            "cran",
-            "r",
-            "r-package"
+            "laser",
+            "plasma",
+            "physics",
+            "gpu",
+            "simulation",
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-        "uid": "github/sfarrens/sfof",
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-        "rel": "/software/repository/github/sfarrens/sfof",
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+        "uid": "github/schulze61/RhoPop",
+        "url": "https://github.com/schulze61/RhoPop",
+        "rel": "/software/repository/github/schulze61/RhoPop",
+        "avatar": "https://avatars.githubusercontent.com/u/43186618?v=4",
+        "description": null,
+        "topics": []
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+        "uid": "github/gourabghoshroy/MPVNN",
+        "url": "https://github.com/gourabghoshroy/MPVNN",
+        "rel": "/software/repository/github/gourabghoshroy/MPVNN",
+        "avatar": "https://avatars.githubusercontent.com/u/10203845?v=4",
+        "description": "MUTATED PATHWAY VISIBLE NEURAL NETWORK FOR CANCER SPECIFIC SURVIVAL RISK PREDICTION",
+        "topics": []
+    },
+    {
+        "uid": "github/devries/analytic_infall",
+        "url": "https://github.com/devries/analytic_infall",
+        "rel": "/software/repository/github/devries/analytic_infall",
+        "avatar": "https://avatars.githubusercontent.com/u/1096938?v=4",
+        "description": "Analytic 1-D radiative transfer model of blue-asymmetric spectral line profiles from infalling molecular clouds. The model is presented in the paper, \"Molecular Line Profile Fitting with Analytic Radiative Transfer Models\" by De Vries & Myers (2005).",
         "topics": [
-            "redshift",
-            "percolation",
-            "galaxy",
-            "clusters",
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-        "uid": "github/sfarrens/sf_deconvolve",
-        "url": "https://github.com/sfarrens/sf_deconvolve",
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-        "description": "A Python code designed for PSF deconvolution using a low-rank approximation and sparsity. The code can handle a fixed PSF for the entire field or a stack of PSFs for each galaxy position.",
+        "uid": "github/KolmogorovLab/Severus",
+        "url": "https://github.com/KolmogorovLab/Severus",
+        "rel": "/software/repository/github/KolmogorovLab/Severus",
+        "avatar": "https://avatars.githubusercontent.com/u/115726369?v=4",
+        "description": "A tool for somatic structural variant calling using long reads",
         "topics": []
     },
     {
-        "uid": "github/johnpaulett/python-hl7",
-        "url": "https://github.com/johnpaulett/python-hl7",
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-        "avatar": "https://avatars.githubusercontent.com/u/30702?v=4",
-        "description": "A simple library for parsing messages of Health Level 7 (HL7) version 2.x into Python objects.",
+        "uid": "github/Junwu302/HiFun",
+        "url": "https://github.com/Junwu302/HiFun",
+        "rel": "/software/repository/github/Junwu302/HiFun",
+        "avatar": "https://avatars.githubusercontent.com/u/49974219?v=4",
+        "description": "Homology Independent Protein Function prediction on Protein-Language Self-Attention Model",
         "topics": []
     },
     {
-        "uid": "github/reneheller/pile-up",
-        "url": "https://github.com/reneheller/pile-up",
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-        "avatar": "https://avatars.githubusercontent.com/u/7735050?v=4",
-        "description": "A gnuplot script for Monte Carlo simulations of disk and stellar tidal torques acting on hot Jupiters",
+        "uid": "github/ajohnson-uoregon/llvm-project",
+        "url": "https://github.com/ajohnson-uoregon/llvm-project",
+        "rel": "/software/repository/github/ajohnson-uoregon/llvm-project",
+        "avatar": "https://avatars.githubusercontent.com/u/37465135?v=4",
+        "description": "The LLVM Project is a collection of modular and reusable compiler and toolchain technologies. Note: the repository does not accept github pull requests at this moment. Please submit your patches at http://reviews.llvm.org.",
         "topics": []
     },
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-        "avatar": "https://avatars.githubusercontent.com/u/51682419?v=4",
-        "description": "A Swift backend for communicating to instruments over TCPIP over the VISA protocol.",
+        "uid": "github/wilkelab/Opfi",
+        "url": "https://github.com/wilkelab/Opfi",
+        "rel": "/software/repository/github/wilkelab/Opfi",
+        "avatar": "https://avatars.githubusercontent.com/u/7905759?v=4",
+        "description": "A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.",
         "topics": []
     },
     {
-        "uid": "github/zizroc/villager",
-        "url": "https://github.com/zizroc/villager",
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-        "description": "villager is an extensible agent based modeling (ABM) framework for the R language. It supports agents, agent aggregations and their associated resources, as well as flexible data management.",
+        "uid": "github/Kingsford-Group/scallop",
+        "url": "https://github.com/Kingsford-Group/scallop",
+        "rel": "/software/repository/github/Kingsford-Group/scallop",
+        "avatar": "https://avatars.githubusercontent.com/u/7586159?v=4",
+        "description": "Scallop is a reference-based transcriptome assembler for RNA-seq",
+        "topics": []
+    },
+    {
+        "uid": "github/ACEnglish/truvari",
+        "url": "https://github.com/ACEnglish/truvari",
+        "rel": "/software/repository/github/ACEnglish/truvari",
+        "avatar": "https://avatars.githubusercontent.com/u/2422579?v=4",
+        "description": "Structural variant toolkit for VCFs",
         "topics": [
-            "simulation",
-            "abm",
-            "agent-based-modeling"
+            "structural-variation",
+            "vcf",
+            "bioinformatics",
+            "data-science",
+            "genomics",
+            "vcf-comparison",
+            "annotation-tool",
+            "benchmark-scripts",
+            "sequencing-data",
+            "sv-merging"
         ]
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     {
-        "uid": "github/cheerfuluser/tessreduce",
-        "url": "https://github.com/CheerfulUser/TESSreduce",
-        "rel": "/software/repository/github/cheerfuluser/tessreduce",
-        "avatar": "https://avatars.githubusercontent.com/u/25831737?v=4",
-        "description": "Transient focused reduction for TESS data",
+        "uid": "github/ANTsX/ANTs",
+        "url": "https://github.com/ANTsX/ANTs",
+        "rel": "/software/repository/github/ANTsX/ANTs",
+        "avatar": "https://avatars.githubusercontent.com/u/31454717?v=4",
+        "description": "Advanced Normalization Tools (ANTs)  ",
         "topics": []
     },
     {
-        "uid": "github/DynaSlum/satsense",
-        "url": "https://github.com/DynaSlum/satsense",
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-        "avatar": "https://avatars1.githubusercontent.com/u/23557167?v=4",
-        "description": "Satsense is a Python library for land use/cover classification using satellite imagery",
+        "uid": "github/jessecambon/tidygeocoder",
+        "url": "https://github.com/jessecambon/tidygeocoder",
+        "rel": "/software/repository/github/jessecambon/tidygeocoder",
+        "avatar": "https://avatars.githubusercontent.com/u/31526206?v=4",
+        "description": "Geocoding Made Easy",
         "topics": [
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-            "classification",
-            "machine-learning",
-            "machine-learning-algorithms",
-            "land-use",
-            "land-cover",
-            "earth-observation"
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+            "geocoding",
+            "tidyverse",
+            "rstats",
+            "rspatial"
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-        "avatar": "https://avatars.githubusercontent.com/u/13010209?v=4",
-        "description": "Deep Learning of Supernova Ia Parameters",
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+        "url": "https://github.com/samtools/htslib",
+        "rel": "/software/repository/github/samtools/htslib",
+        "avatar": "https://avatars.githubusercontent.com/u/1518450?v=4",
+        "description": "C library for high-throughput sequencing data formats",
         "topics": [
-            "supernovae",
-            "supernova-ia-identification",
-            "deep-learning",
-            "convolutional-neural-networks",
-            "transients",
-            "astronomy",
-            "astrophysics",
-            "spectra",
-            "cosmology"
+            "htslib",
+            "bioinformatics",
+            "sam",
+            "bam",
+            "cram",
+            "vcf",
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     },
     {
-        "uid": "github/cjneely10/EukMetaSanity",
-        "url": "https://github.com/cjneely10/EukMetaSanity",
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-        "avatar": "https://avatars.githubusercontent.com/u/31027651?v=4",
-        "description": "Structural and functional annotation of eukaryotic metagenome-assembled genomes",
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+        "rel": "/software/repository/github/samtools/bcftools",
+        "avatar": "https://avatars.githubusercontent.com/u/1518450?v=4",
+        "description": "This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html",
         "topics": []
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     {
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-        "avatar": "https://avatars.githubusercontent.com/u/4683401?v=4",
-        "description": "Containing codes for the SGRB and LGRB world models",
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+        "url": "https://github.com/samtools/samtools",
+        "rel": "/software/repository/github/samtools/samtools",
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+        "description": "Tools (written in C using htslib) for manipulating next-generation sequencing data",
         "topics": []
     },
     {
-        "uid": "github/ColdThunder/NR-code",
-        "url": "https://github.com/ColdThunder/NR-code",
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-        "avatar": "https://avatars.githubusercontent.com/u/3037902?v=4",
-        "description": "Nonlinear reconstruction code",
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+        "url": "https://github.com/samtools/htsjdk",
+        "rel": "/software/repository/github/samtools/htsjdk",
+        "avatar": "https://avatars.githubusercontent.com/u/1518450?v=4",
+        "description": "A Java API for high-throughput sequencing data (HTS) formats.",
+        "topics": [
+            "genomics",
+            "sequencing",
+            "dna",
+            "ngs",
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+            "sam",
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+            "java"
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+        "uid": "github/tribshms/tRIBS",
+        "url": "https://github.com/tribshms/tRIBS",
+        "rel": "/software/repository/github/tribshms/tRIBS",
+        "avatar": "https://avatars.githubusercontent.com/u/69878127?v=4",
+        "description": "TIN-based Real-time Integrated Basin Simulator (tRIBS) Distributed Hydrological Model",
+        "topics": [
+            "hydrology",
+            "hydrology-modeling",
+            "hydrology-simulation"
+        ]
+    },
+    {
+        "uid": "github/WelbornGroup/ELECTRIC",
+        "url": "https://github.com/WelbornGroup/ELECTRIC",
+        "rel": "/software/repository/github/WelbornGroup/ELECTRIC",
+        "avatar": "https://avatars2.githubusercontent.com/u/49160194?v=4",
+        "description": "ELECTRIC: Electric fields Leveraged from multipole Expansion Calculations in Tinker Rapid Interface Code.",
         "topics": []
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     {
-        "uid": "github/dbuscher/pois",
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-        "avatar": "https://avatars.githubusercontent.com/u/1148470?v=4",
-        "description": "Python framework simulating the data from a ground-based optical interferometer",
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+        "url": "https://github.com/henrycousins/gspa",
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+        "description": "Python implementation of gene set proximity analysis",
         "topics": []
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     {
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-        "url": "https://github.com/nansencenter/DAPPER",
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-            "particle-filter",
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-            "bayesian-methods",
-            "bayesian-filter",
-            "chaos"
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+        "uid": "github/joglekara/VlaPy",
+        "url": "https://github.com/joglekara/VlaPy",
+        "rel": "/software/repository/github/joglekara/VlaPy",
+        "avatar": "https://avatars1.githubusercontent.com/u/13438206?v=4",
+        "description": "1D-1V Vlasov-Poisson(-Fokker-Planck) Plasma Physics Simulation Tool",
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     {
-        "uid": "github/hombit/freddi",
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-        "description": "Compute FRED light curves of LMXBs outbursts",
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-            "astrophysics",
-            "x-ray-binaries",
-            "fred",
-            "science",
-            "lmxb"
-        ]
+        "uid": "github/mecobpsu/bacseq",
+        "url": "https://github.com/tmrcpsu/bacseq",
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-            "astronomical-algorithms",
-            "infrared",
-            "echelle",
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+        "description": "The python implementation of the MMTF API, decoder and encoder.",
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-        "avatar": "https://avatars.githubusercontent.com/u/4931332?v=4",
-        "description": ":package: :snake: Python package to model and forecast the risk of deforestation",
+        "uid": "github/BrianAronson/birankr",
+        "url": "https://github.com/BrianAronson/birankr",
+        "rel": "/software/repository/github/BrianAronson/birankr",
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+        "description": "CRAN package for estimating various rank (centrality) measures of nodes in bipartite graphs (two-mode networks).",
+        "topics": []
+    },
+    {
+        "uid": "github/LiberTEM/LiberTEM",
+        "url": "https://github.com/LiberTEM/LiberTEM",
+        "rel": "/software/repository/github/LiberTEM/LiberTEM",
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+        "description": "Open pixelated STEM framework",
         "topics": [
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-            "land-use-change",
-            "spatial-modelling",
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-            "co2-emissions",
-            "ipcc",
-            "forest-cover-change",
-            "deforestation",
-            "deforestation-risk",
-            "redd"
+            "electron-microscopy",
+            "data-processing",
+            "image-processing",
+            "python"
         ]
     },
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-        "description": "A blocking, shuffling and loss-less compression library that can be faster than `memcpy()`.",
+        "uid": "github/itpplasma/GORILLA",
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+        "description": "GORILLA: Guiding-center ORbit Integration with Local Linearization Approach",
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-            "compression",
-            "fast"
+            "fusion-reactor",
+            "hamiltonian-systems",
+            "kinetic-modeling",
+            "numerical-integration",
+            "numerical-methods",
+            "plasma-physics",
+            "simulation",
+            "stellarator",
+            "tokamak",
+            "guiding-center"
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-        "url": "https://github.com/bioinfodlsu/phage-host-prediction",
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-        "description": "Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding proteins of phages. It presents improvements over using handcrafted sequence properties and eliminates the need to manually extract and select features from phage sequences",
+        "uid": "github/EdwardBerman/shopt",
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+        "avatar": "https://avatars.githubusercontent.com/u/94378814?v=4",
+        "description": "Shear Optimization with ShOpt.jl, a julia package for empirical point spread function characterizations",
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-            "genomics",
-            "phage-host-prediction",
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-            "protein-language-model",
-            "proteomics",
-            "representation-learning",
-            "transfer-learning",
-            "transformer",
-            "machine-learning"
+            "astrophysics",
+            "julia",
+            "jwst",
+            "point-spread-function",
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-        "uid": "github/bioinfodlsu/PHIStruct",
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-        "description": "Published in Bioinformatics. Phage-host interaction prediction tool that incorporates protein structure information in representing receptor-binding proteins (RBPs). It improves performance especially for phages with RBPs that have low sequence similarity to those of known phages",
+        "uid": "github/tbrown122387/pf",
+        "url": "https://github.com/tbrown122387/pf",
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+        "avatar": "https://avatars0.githubusercontent.com/u/1740324?v=4",
+        "description": "PF: a header only template library for fast particle filtering!",
         "topics": [
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-            "deep-learning",
-            "genomics",
-            "machine-learning",
-            "phage-host-prediction",
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-            "protein-structure",
-            "proteomics",
-            "representation-learning",
-            "transfer-learning",
-            "transformer",
-            "alphafold",
-            "alphafold2"
+            "particle-filter",
+            "statistics",
+            "statistical-methods",
+            "statistical-models"
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-        "uid": "github/freesurfer/freesurfer",
-        "url": "https://github.com/freesurfer/freesurfer",
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-        "avatar": "https://avatars.githubusercontent.com/u/6330653?v=4",
-        "description": "Neuroimaging analysis and visualization suite",
+        "uid": "github/KeplerGO/PyKE",
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+        "avatar": "https://avatars.githubusercontent.com/u/13040606?v=4",
+        "description": "Easy command line tools for Kepler, K2 & TESS data analysis.",
         "topics": [
-            "freesurfer",
-            "neuroimaging",
-            "mri",
-            "lcn"
+            "kepler",
+            "k2",
+            "tess",
+            "astrophysics"
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-        "uid": "github/danielhuson/malt",
-        "url": "https://github.com/husonlab/malt",
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-        "avatar": "https://avatars.githubusercontent.com/u/6740594?v=4",
-        "description": "MEGAN alignment tool",
+        "uid": "github/KeplerGO/k2mosaic",
+        "url": "https://github.com/KeplerGO/k2mosaic",
+        "rel": "/software/repository/github/KeplerGO/k2mosaic",
+        "avatar": "https://avatars.githubusercontent.com/u/13040606?v=4",
+        "description": "Mosaic Target Pixel Files (TPFs) obtained by NASA's Kepler/K2 missions into CCD-sized images and movies.",
         "topics": []
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     {
-        "uid": "github/danielhuson/megan-ce",
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-        "avatar": "https://avatars.githubusercontent.com/u/6740594?v=4",
-        "description": "MEGAN Community Edition",
+        "uid": "github/KeplerGO/K2fov",
+        "url": "https://github.com/KeplerGO/K2fov",
+        "rel": "/software/repository/github/KeplerGO/K2fov",
+        "avatar": "https://avatars.githubusercontent.com/u/13040606?v=4",
+        "description": "Check whether targets are in the field of view of NASA's K2 space telescope",
         "topics": []
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     {
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-        "url": "https://github.com/husonlab/dendroscope3",
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-        "avatar": "https://avatars.githubusercontent.com/u/6740594?v=4",
-        "description": "Dendroscope program for analyzing and visualizing rooted phylogenetic trees and networks",
+        "uid": "github/KeplerGO/kadenza",
+        "url": "https://github.com/KeplerGO/kadenza",
+        "rel": "/software/repository/github/KeplerGO/kadenza",
+        "avatar": "https://avatars.githubusercontent.com/u/13040606?v=4",
+        "description": "Converts raw cadence target data from the Kepler space telescope into astronomer-friendly FITS files.",
         "topics": []
     },
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-        "uid": "github/danielhuson/jloda",
-        "url": "https://github.com/husonlab/jloda",
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-        "avatar": "https://avatars.githubusercontent.com/u/6740594?v=4",
-        "description": "JLODA - Java library of data structures and algorithms",
+        "uid": "github/mlafarga/raccoon",
+        "url": "https://github.com/mlafarga/raccoon",
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+        "description": null,
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     {
-        "uid": "github/davidechicco/geneExpressionFromGEO",
-        "url": "https://github.com/davidechicco/geneExpressionFromGEO",
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-        "avatar": "https://avatars.githubusercontent.com/u/12862995?v=4",
-        "description": "geneExpressionFromGEO",
+        "uid": "github/hover2pi/SEDkit",
+        "url": "https://github.com/hover2pi/sedkit",
+        "rel": "/software/repository/github/hover2pi/SEDkit",
+        "avatar": "https://avatars.githubusercontent.com/u/34687?v=4",
+        "description": "Spectral energy distribution construction and analysis tools",
         "topics": []
     },
     {
-        "uid": "github/ComputationalRegulatoryGenomicsICL/TFBS",
-        "url": "https://github.com/ComputationalRegulatoryGenomicsICL/TFBS",
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-        "avatar": "https://avatars.githubusercontent.com/u/1623799?v=4",
-        "description": "TFBS perl module",
+        "uid": "github/nemesiscode/radtrancode",
+        "url": "https://github.com/nemesiscode/radtrancode",
+        "rel": "/software/repository/github/nemesiscode/radtrancode",
+        "avatar": "https://avatars.githubusercontent.com/u/47110639?v=4",
+        "description": "This is the repository of the NEMESIS/RADTRANS project. It is described on the associated web page listed here.",
         "topics": []
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     {
-        "uid": "github/mikecokina/elisa",
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-        "rel": "/software/repository/github/mikecokina/elisa",
-        "avatar": "https://avatars.githubusercontent.com/u/23422027?v=4",
-        "description": null,
+        "uid": "github/hmtabernero/SteParSyn",
+        "url": "https://github.com/hmtabernero/SteParSyn",
+        "rel": "/software/repository/github/hmtabernero/SteParSyn",
+        "avatar": "https://avatars.githubusercontent.com/u/46009226?v=4",
+        "description": "SteParSyn is an automatic code used to infer stellar atmospheric parameters using the spectral synthesis method. ",
         "topics": [
-            "eclipsing-binaries",
-            "astronomy",
-            "analysis",
-            "modeling",
-            "physic"
+            "stellar-parameters",
+            "stellar-atmospheres",
+            "stellar-astrophysics"
         ]
     },
     {
-        "uid": "github/akikuno/cstag",
-        "url": "https://github.com/akikuno/cstag",
-        "rel": "/software/repository/github/akikuno/cstag",
-        "avatar": "https://avatars.githubusercontent.com/u/15861316?v=4",
-        "description": "Python module to manipulate and visualize minimap2's cs tag",
+        "uid": "github/pyplati/platipy",
+        "url": "https://github.com/pyplati/platipy",
+        "rel": "/software/repository/github/pyplati/platipy",
+        "avatar": "https://avatars.githubusercontent.com/u/71683675?v=4",
+        "description": "Processing Library and Analysis Toolkit for Medical Imaging in Python",
         "topics": [
-            "bioinformatics",
+            "image-analysis",
+            "medical-imaging",
             "python",
-            "sequence",
-            "minimap2",
-            "sam",
-            "cstag"
+            "registration",
+            "segmentation",
+            "visualization"
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     {
-        "uid": "github/arcaldwell49/SimplyAgree",
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-        "avatar": "https://avatars.githubusercontent.com/u/24322628?v=4",
-        "description": "A simple R package for calculating absolute agreement and estimating required sample sizes for studies of absolute agreement",
+        "uid": "github/liuhong-jia/scAnno",
+        "url": "https://github.com/liuhong-jia/scAnno",
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-        "avatar": "https://avatars.githubusercontent.com/u/30595084?v=4",
-        "description": "DIA-NN - a universal automated software suite for DIA proteomics data analysis. ",
+        "uid": "github/hanyk/BayeSED3",
+        "url": "https://github.com/hanyk/BayeSED3",
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+        "avatar": "https://avatars.githubusercontent.com/u/7869600?v=4",
+        "description": "A code for Bayesian SED synthesis and analysis of galaxies and AGNs",
         "topics": []
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-        "avatar": "https://avatars.githubusercontent.com/u/17427270?v=4",
+        "uid": "github/VU-BEAM-Lab/GENRE",
+        "url": "https://github.com/VU-BEAM-Lab/GENRE",
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-        "description": "Machine learning pipeline trained for finding and size-estimating X-ray cavities from noisy Chandra images of early-type galaxies.",
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-            "segmentation",
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-            "convolutional-neural-networks",
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+        "uid": "github/puregome/notebooks",
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+        "description": "Notebooks of the PuReGoMe Project of the Netherlands eScience Center and Utrecht University.",
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     {
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-        "avatar": "https://avatars3.githubusercontent.com/u/19147158?v=4",
-        "description": "Python tools for the MicMac FOSS photogrammetric \"suite\"",
+        "uid": "github/obertscheiderfhwn/RTMsim",
+        "url": "https://github.com/obertscheiderfhwn/RTMsim",
+        "rel": "/software/repository/github/obertscheiderfhwn/RTMsim",
+        "avatar": "https://avatars.githubusercontent.com/u/102595368?v=4",
+        "description": "RTMsim - A Julia module for filling simulations in Resin Transfer Moulding",
         "topics": []
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     {
-        "uid": "github/bioAI-Oslo/Spikeometric",
-        "url": "https://github.com/bioAI-Oslo/Spikeometric",
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-        "avatar": "https://avatars.githubusercontent.com/u/84571881?v=4",
-        "description": "Spiking Neural Network Simulator based on Generalized Linear Models",
+        "uid": "github/Dfam-consortium/RepeatModeler",
+        "url": "https://github.com/Dfam-consortium/RepeatModeler",
+        "rel": "/software/repository/github/Dfam-consortium/RepeatModeler",
+        "avatar": "https://avatars0.githubusercontent.com/u/40807771?v=4",
+        "description": "De-Novo Repeat Discovery Tool",
         "topics": []
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     {
-        "uid": "github/ahcm/ffindex",
-        "url": "https://github.com/ahcm/ffindex",
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-        "avatar": "https://avatars.githubusercontent.com/u/13995862?v=4",
-        "description": "simple index/database for huge amounts of small files",
+        "uid": "github/ESMValGroup/ESMValCore",
+        "url": "https://github.com/ESMValGroup/ESMValCore",
+        "rel": "/software/repository/github/ESMValGroup/ESMValCore",
+        "avatar": "https://avatars1.githubusercontent.com/u/24584460?v=4",
+        "description": "ESMValTool Core: core functionalities for the ESMValTool",
         "topics": []
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     {
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-        "description": null,
+        "uid": "github/ESMValGroup/ESMValTool",
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+        "description": "ESMValTool: A community diagnostic and performance metrics tool for routine evaluation of Earth system models in CMIP ",
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     {
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-        "avatar": "https://avatars.githubusercontent.com/u/6935283?v=4",
-        "description": "Tools for fiberseq data written in rust. ",
+        "uid": "github/moustakas/iSEDfit",
+        "url": "https://github.com/moustakas/iSEDfit",
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+        "description": "iSEDfit is a Bayesian spectral energy distribution fitting code designed to extract the physical properties of galaxies from broadband photometry.",
         "topics": []
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     {
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-        "description": "bioinformatics toolkit in rust",
-        "topics": [
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+        "uid": "github/zhangzzk/forklens",
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+        "avatar": "https://avatars.githubusercontent.com/u/31132161?v=4",
+        "description": "DL weak lensing shear",
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     {
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-        "avatar": "https://avatars.githubusercontent.com/u/22506369?v=4",
-        "description": "Simple layers for species distribution modeling and bioclimatic data",
+        "uid": "github/AstroVPK/kali",
+        "url": "https://github.com/AstroVPK/kali",
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+        "avatar": "https://avatars.githubusercontent.com/u/11365671?v=4",
+        "description": "A library to model a time series as a Continuous-time ARMA process",
         "topics": []
     },
     {
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-        "avatar": "https://avatars.githubusercontent.com/u/22506369?v=4",
-        "description": "For analysis of microbiome and microbial community data",
+        "uid": "github/Valcin/BE_HaPPy",
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+        "avatar": "https://avatars.githubusercontent.com/u/40492877?v=4",
+        "description": "Bias Emulator for Halo Power Spectrum ",
+        "topics": []
+    },
+    {
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+        "description": "Out-of-Core hybrid Apache Arrow/NumPy DataFrame for Python, ML, visualization and exploration of big tabular data at a billion rows per second \ud83d\ude80",
         "topics": [
-            "microbiome",
-            "julia-language",
-            "ecology",
-            "biology"
+            "dataframe",
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+            "bigdata",
+            "tabular-data",
+            "visualization",
+            "memory-mapped-file",
+            "hdf5",
+            "machine-learning",
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     {
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-        "avatar": "https://avatars.githubusercontent.com/u/22506369?v=4",
-        "description": "Everything you've never dreamed about measuring on ecological networks.",
+        "uid": "github/radis/radis",
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+        "avatar": "https://avatars.githubusercontent.com/u/35809936?v=4",
+        "description": "\ud83c\udf31 A fast line-by-line code for high-resolution infrared molecular spectra",
         "topics": [
-            "julia",
-            "ecology",
-            "networks"
+            "spectroscopy",
+            "spectra",
+            "infrared",
+            "hitran",
+            "hitemp",
+            "plasma",
+            "plasma-physics",
+            "combustion",
+            "radiation",
+            "astrophysics",
+            "exoplanets",
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     {
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-        "description": "Tools to display the TESS pixel response function (PRF) at any location on the detector",
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+        "description": "Alignment of RNAs",
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-        "description": "MCFOST radiative transfer code",
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+        "description": "A Python package for subhalo abundance matching (SHAM) with scatter.",
         "topics": [
-            "astronomy",
-            "astrophysics",
-            "astrophysical-simulation",
-            "radiative-transfer",
-            "fortran"
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+            "abundance-matching",
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-        "description": "python interface to the 3D radiative transfer code mcfost",
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+        "avatar": "https://avatars.githubusercontent.com/u/39727223?v=4",
+        "description": "A spherical convolutional neural network for cosmology (TFv1).",
+        "topics": [
+            "graph-neural-networks",
+            "deep-learning",
+            "cosmology",
+            "spherical-harmonics",
+            "sphere",
+            "tensorflow",
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-        "avatar": "https://avatars.githubusercontent.com/u/4163533?v=4",
-        "description": "python tool to display and analysis astronomical data cubes",
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-        "description": "Feature engineering package with sklearn like functionality",
-        "topics": []
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+        "description": "Open exoplanet transit search pipeline",
+        "topics": [
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+            "tess",
+            "kepler",
+            "k2",
+            "transiting-exoplanets",
+            "transiting-planets",
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-        "uid": "github/pymedphys/pymedphys",
-        "url": "https://github.com/pymedphys/pymedphys",
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-        "description": "A community effort to develop an open standard library for Medical Physics in Python. Building quality transparent software together via peer review and open source distribution. Open code is better science.",
+        "uid": "github/hpparvi/PyTransit",
+        "url": "https://github.com/hpparvi/PyTransit",
+        "rel": "/software/repository/github/hpparvi/PyTransit",
+        "avatar": "https://avatars.githubusercontent.com/u/327523?v=4",
+        "description": "Fast and easy exoplanet transit light curve modelling.",
         "topics": [
-            "medical-physics",
-            "dicom",
-            "radiation-oncology",
-            "radiation-therapy",
-            "radiation-physics",
-            "radiotherapy"
+            "transiting-exoplanets",
+            "python",
+            "light-curve-models",
+            "transit-model",
+            "astrophysics",
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-        "description": "a python program for rapidly comparing large numbers of genomes, dRep can also \"de-replicate\" a genome set by identifying groups of highly similar genomes and choosing the best representative genome for each genome set.",
+        "uid": "github/hpparvi/MuSCAT2_transit_pipeline",
+        "url": "https://github.com/hpparvi/MuSCAT2_transit_pipeline",
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+        "avatar": "https://avatars.githubusercontent.com/u/327523?v=4",
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         "topics": [
-            "bioinformatics",
-            "metagenomics",
-            "microbiology",
-            "assembly",
-            "microbial-genomes"
+            "astronomy",
+            "astrophysics",
+            "exoplanets",
+            "photometry",
+            "exoplanet-transits"
         ]
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     {
-        "uid": "github/gperezs/StarcNet",
-        "url": "https://github.com/gperezs/StarcNet",
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-        "avatar": "https://avatars.githubusercontent.com/u/16939029?v=4",
-        "description": "Machine learning for star cluster classification",
-        "topics": []
+        "uid": "github/hpparvi/ldtk",
+        "url": "https://github.com/hpparvi/ldtk",
+        "rel": "/software/repository/github/hpparvi/ldtk",
+        "avatar": "https://avatars.githubusercontent.com/u/327523?v=4",
+        "description": "Python toolkit for calculating stellar limb darkening profiles and model-specific coefficients using the stellar atmosphere spectrum library by Husser et al. (2013). Described in Parviainen & Aigrain, MNRAS 453, 3821\u20133826 (2015).",
+        "topics": [
+            "python",
+            "limb-darkening-profiles",
+            "limb-darkening-models",
+            "astrophysics",
+            "astronomy",
+            "exoplanets",
+            "exoplanet-transits"
+        ]
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-        "uid": "github/achael/eht-imaging",
-        "url": "https://github.com/achael/eht-imaging",
-        "rel": "/software/repository/github/achael/eht-imaging",
-        "avatar": "https://avatars.githubusercontent.com/u/14789925?v=4",
-        "description": "Imaging, analysis, and simulation software for radio interferometry",
+        "uid": "github/ipython/ipython",
+        "url": "https://github.com/ipython/ipython",
+        "rel": "/software/repository/github/ipython/ipython",
+        "avatar": "https://avatars3.githubusercontent.com/u/230453?v=4",
+        "description": "Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.",
+        "topics": [
+            "ipython",
+            "jupyter",
+            "data-science",
+            "notebook",
+            "python",
+            "repl"
+        ]
+    },
+    {
+        "uid": "github/davidpamos/MultiModes",
+        "url": "https://github.com/davidpamos/MultiModes",
+        "rel": "/software/repository/github/davidpamos/MultiModes",
+        "avatar": "https://avatars.githubusercontent.com/u/69325417?v=4",
+        "description": "An efficient tool for the analysis of pulsating stars",
         "topics": []
     },
     {
-        "uid": "github/SHTOOLS/SHTOOLS",
-        "url": "https://github.com/SHTOOLS/SHTOOLS",
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-        "avatar": "https://avatars.githubusercontent.com/u/8998566?v=4",
-        "description": "SHTOOLS - Spherical Harmonic Tools",
+        "uid": "github/CityU-AIM-Group/HTD",
+        "url": "https://github.com/CityU-AIM-Group/HTD",
+        "rel": "/software/repository/github/CityU-AIM-Group/HTD",
+        "avatar": "https://avatars.githubusercontent.com/u/81352317?v=4",
+        "description": "[TIP' 21] HTD: Heterogeneous Task Decoupling for Two-stage Object Detection",
         "topics": [
-            "spherical-harmonics",
-            "spectral-analysis",
-            "python",
-            "fortran",
-            "gravity-field",
-            "magnetic-field",
-            "topography",
-            "slepian-functions"
+            "object-detection",
+            "faster-rcnn",
+            "graph",
+            "mmdetection"
         ]
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-        "uid": "github/Aminsinichi/wearable-hrv",
-        "url": "https://github.com/Aminsinichi/wearable-hrv",
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-        "avatar": "https://avatars.githubusercontent.com/u/126984097?v=4",
-        "description": "A Python package for the validation of heart rate and heart rate variability in wearables",
+        "uid": "github/jstjohn/SeqPrep",
+        "url": "https://github.com/jstjohn/SeqPrep",
+        "rel": "/software/repository/github/jstjohn/SeqPrep",
+        "avatar": "https://avatars.githubusercontent.com/u/459014?v=4",
+        "description": "Tool for stripping adaptors and/or merging paired reads with overlap into single reads.",
+        "topics": []
+    },
+    {
+        "uid": "github/gramos/imagetooth",
+        "url": "https://github.com/gramos/imagetooth",
+        "rel": "/software/repository/github/gramos/imagetooth",
+        "avatar": "https://avatars.githubusercontent.com/u/10948?v=4",
+        "description": "This library allows to generate images of teeth for odontograms with tooth faces painted",
+        "topics": []
+    },
+    {
+        "uid": "github/Jacks0nJ/PyFPT",
+        "url": "https://github.com/Jacks0nJ/PyFPT",
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+        "avatar": "https://avatars.githubusercontent.com/u/73479437?v=4",
+        "description": "Stochastic first-passage time (FPT) simulations using importance sampling.",
         "topics": [
-            "heart-rate",
-            "heart-rate-variability",
-            "hrv",
-            "psychophysiology",
-            "python",
-            "wearables",
-            "validation"
+            "cosmology",
+            "cython",
+            "first-passage-times",
+            "importance-sampling",
+            "inflation",
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-        "uid": "github/kavonrtep/dante",
-        "url": "https://github.com/kavonrtep/dante",
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-        "avatar": "https://avatars2.githubusercontent.com/u/8256626?v=4",
-        "description": "Domain based annotation of transposable elements ",
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+        "url": "https://github.com/ryanvarley/ExoData",
+        "rel": "/software/repository/github/ryanvarley/exodata",
+        "avatar": "https://avatars.githubusercontent.com/u/1278326?v=4",
+        "description": "Exoplanet catalogue interface and exploratory analysis tool",
         "topics": []
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-        "uid": "github/gbernstein/pixmappy",
-        "url": "https://github.com/gbernstein/pixmappy",
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-        "avatar": "https://avatars.githubusercontent.com/u/1461152?v=4",
-        "description": "Python interface to gbdes pixel map (astrometry) solutions",
+        "uid": "github/GeodynamicWorldBuilder/WorldBuilder",
+        "url": "https://github.com/GeodynamicWorldBuilder/WorldBuilder",
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+        "description": "World Builder: An initial conditions generator for geodynamic modeling",
         "topics": []
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-        "avatar": "https://avatars.githubusercontent.com/u/1461152?v=4",
-        "description": "Gary's DES instrumental signature removal / fitting programs",
+        "uid": "github/MelanieKahl/MechAnalyze",
+        "url": "https://github.com/MelanieKahl/MechAnalyze",
+        "rel": "/software/repository/github/MelanieKahl/MechAnalyze",
+        "avatar": "https://avatars.githubusercontent.com/u/63041177?v=4",
+        "description": "an algorithm for standardization and automation of unconfined compression test analysis",
+        "topics": []
+    },
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+        "uid": "github/feature-engine/feature_engine",
+        "url": "https://github.com/feature-engine/feature_engine",
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+        "avatar": "https://avatars.githubusercontent.com/u/87381597?v=4",
+        "description": "Feature engineering package with sklearn like functionality",
         "topics": []
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-        "uid": "github/RafiKueng/SpaghettiLens",
-        "url": "https://github.com/RafiKueng/SpaghettiLens",
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-        "avatar": "https://avatars.githubusercontent.com/u/937466?v=4",
-        "description": "Webbased Gravitational Lens Modelling Tool (client and server side)",
-        "topics": []
+        "uid": "github/aymgal/COOLEST",
+        "url": "https://github.com/aymgal/COOLEST",
+        "rel": "/software/repository/github/aymgal/COOLEST",
+        "avatar": "https://avatars.githubusercontent.com/u/10706063?v=4",
+        "description": "Standard for strong gravitational lensing studies",
+        "topics": [
+            "astrophysics",
+            "gravitational-lensing",
+            "lens-modeling",
+            "standardization"
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+        "uid": "github/biocore-ntnu/pyranges",
+        "url": "https://github.com/biocore-ntnu/pyranges",
+        "rel": "/software/repository/github/biocore-ntnu/pyranges",
+        "avatar": "https://avatars.githubusercontent.com/u/25345003?v=4",
+        "description": "Performant Pythonic GenomicRanges",
+        "topics": [
+            "genomicranges",
+            "python",
+            "genomics",
+            "pandas",
+            "data-structures"
+        ]
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-        "uid": "github/remi-adam/minot",
-        "url": "https://github.com/remi-adam/minot",
-        "rel": "/software/repository/github/remi-adam/minot",
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-        "description": "minot: Modeling of the ICM (Non-)thermal content and Observables prediction Tools",
+        "uid": "github/biocore-ntnu/epic2",
+        "url": "https://github.com/biocore-ntnu/epic2",
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+        "avatar": "https://avatars.githubusercontent.com/u/25345003?v=4",
+        "description": "Ultraperformant reimplementation of SICER",
         "topics": []
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-        "uid": "github/jeertmans/DiffeRT2d",
-        "url": "https://github.com/jeertmans/DiffeRT2d",
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-        "avatar": "https://avatars.githubusercontent.com/u/27275099?v=4",
-        "description": "2D Toolbox for Differentiable Ray Tracing",
+        "uid": "github/biocore-ntnu/ncls",
+        "url": "https://github.com/biocore-ntnu/ncls",
+        "rel": "/software/repository/github/biocore-ntnu/ncls",
+        "avatar": "https://avatars.githubusercontent.com/u/25345003?v=4",
+        "description": "The Nested Containment List for Python. Basically a static interval-tree that is silly fast for both construction and lookups.",
         "topics": [
-            "2d",
-            "differentiable",
-            "raytracing",
-            "telecommunications"
+            "ncls",
+            "interval-tree",
+            "overlap-queries",
+            "python",
+            "numpy"
         ]
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     {
-        "uid": "github/itpplasma/GORILLA",
-        "url": "https://github.com/itpplasma/GORILLA",
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-        "avatar": "https://avatars.githubusercontent.com/u/48486978?v=4",
-        "description": "GORILLA: Guiding-center ORbit Integration with Local Linearization Approach",
+        "uid": "github/siara-cc/Unishox2",
+        "url": "https://github.com/siara-cc/Unishox2",
+        "rel": "/software/repository/github/siara-cc/Unishox2",
+        "avatar": "https://avatars.githubusercontent.com/u/12986780?v=4",
+        "description": "Guaranteed compression for Unicode short strings",
         "topics": [
-            "fusion-reactor",
-            "hamiltonian-systems",
-            "kinetic-modeling",
-            "numerical-integration",
-            "numerical-methods",
-            "plasma-physics",
-            "simulation",
-            "stellarator",
-            "tokamak",
-            "guiding-center"
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+            "arduino",
+            "string-compression-algorithms",
+            "string-compression",
+            "database-compression",
+            "iot",
+            "short-string",
+            "json-compression",
+            "xml-compression",
+            "cost-optimization",
+            "bandwidth-saver",
+            "storage-saving",
+            "cloud-cost-intelligence"
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-        "uid": "github/hildebra/LCA",
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-        "description": "least common ancestor evaluation given tax database and ",
+        "uid": "github/brettc/partitionfinder",
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+        "avatar": "https://avatars.githubusercontent.com/u/457283?v=4",
+        "description": "PartitionFinder discovers optimal partitioning schemes for DNA sequences.",
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-        "description": "Fast tool for sequence related tasks",
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+        "description": "SNTD is a Python package dedicated to measuring time delays for strongly lensed and multiply-imaged SN. The package can simulate lensed SN, fit for each SN time delay, and propagate the results all the way through to cosmological constraints.",
+        "topics": [
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+            "gravitational-lensing",
+            "supernova"
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-        "description": "frequency-based string mining (lite)",
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-            "galaxies",
-            "interstellar-medium"
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-            "python",
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+        "avatar": "https://avatars.githubusercontent.com/u/41453363?v=4",
+        "description": "Python objects and interfaces for representing diffuse, extended and compact astrophysical radio sources",
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-        "description": "Fast hash function for DNA sequences",
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+        "description": "A minimalistic framework for Numerical Association Rule Mining",
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-            "k-mer-hashing",
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-            "hash",
-            "bloom-filter"
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-            "genome-scaffolding",
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-            "bioinformatics",
-            "bioinformatics-tool"
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+        "description": "Malleable Load Balancer. Massively Parallel Logic Backend. Award-winning SAT solving for the cloud.",
+        "topics": []
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-            "k-mer-counting",
-            "k-mer-frequency",
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+        "description": "Calculate the equilibrium charge distribution for a dust grain of a given size and composition, depending on the local interstellar medium conditions, such as: density, temperature, ionization fraction, local radiation field strength and cosmic ray ionization fraction.",
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-            "assembler",
-            "scaffold",
-            "genome",
-            "10xgenomics",
-            "graph"
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+        "uid": "github/danielkoll/tidally-locked-coordinates",
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+        "avatar": "https://avatars.githubusercontent.com/u/43180124?v=4",
+        "description": "Scripts for transforming GCM output into a tidally locked coordinate system.",
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-        "description": ":microscope: Assemble large genomes using short reads",
+        "uid": "github/danielkoll/PyRADS",
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+        "description": "A line-by-line longwave radiation code for planetary atmospheres.",
         "topics": [
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-            "science",
-            "bioinformatics",
-            "assembler",
-            "scaffold",
-            "genome",
-            "openmp",
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+            "longwave",
+            "line-by-line",
+            "radiative-transfer",
+            "radiation",
+            "atmosphere",
+            "python",
+            "olr",
+            "planetary-atmospheres",
+            "surface-temperature",
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-        "description": "Correct and scaffold assemblies using long reads",
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+        "description": "Repository for the TFlink.net website.",
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-        "description": "Bioinformatics Technology Lab common code library",
+        "uid": "github/korcsmarosgroup/CytokineLink",
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+        "avatar": "https://avatars.githubusercontent.com/u/54137652?v=4",
+        "description": "CytokineLink: a map of cytokine communication for inflammatory and infectious diseases",
+        "topics": []
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+        "description": "A complete tool set for molecular QTL discovery and analysis",
+        "topics": []
+    },
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+        "description": "pure-python package for numerical analysis of frequencies of numerically integrated orbits",
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+        "description": "Repo for MGCAMB",
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+        "description": "Interpretable ML package \ud83d\udd0d for concise, transparent, and accurate predictive modeling (sklearn-compatible).",
         "topics": [
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             "python",
-            "bloom-filter",
-            "algorithms",
-            "data-structures"
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+            "optimal-classification-tree",
+            "rulefit",
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-        "description": "Derive TMB estimates from whole genome fastq files.    Runs alignment and variant calling before reporting a variety of TMB estimates",
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+        "url": "https://github.com/discsim/frank",
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+        "avatar": "https://avatars.githubusercontent.com/u/43750076?v=4",
+        "description": "1D radial brightness profile reconstruction for interferometric sources",
         "topics": []
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-        "url": "https://github.com/bcgsc/NanoSim",
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-        "avatar": "https://avatars.githubusercontent.com/u/2319317?v=4",
-        "description": "Nanopore sequence read simulator",
+        "uid": "github/oruhnau/when2heat",
+        "url": "https://github.com/oruhnau/when2heat",
+        "rel": "/software/repository/github/oruhnau/when2heat",
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+        "description": "Heating Profiles",
+        "topics": []
+    },
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+        "avatar": "https://avatars.githubusercontent.com/u/52213315?v=4",
+        "description": "A Nextflow Genome-Wide Association Study (GWAS) Pipeline",
         "topics": [
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-            "transcriptome",
-            "simulator",
-            "oxford-nanopore",
-            "nanopore-sequencing"
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-        "url": "https://github.com/bcgsc/goldrush",
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-        "avatar": "https://avatars.githubusercontent.com/u/2319317?v=4",
-        "description": "Linear-time de novo Long Read Assembler",
+        "uid": "github/cbib/decontaminator",
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+        "description": "deep learning contamination filtering tool",
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-            "bioinformatics-tool",
-            "genome-assembly",
-            "long-read-sequencing"
+            "deep-learning",
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+            "rnaseq",
+            "viruses"
         ]
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-        "uid": "github/jfoster17/extinction-distances",
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-        "description": "Code to implement the blue star number count method from Foster et al. (2012) http://adsabs.harvard.edu/abs/2012ApJ...751..157F",
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+        "url": "https://github.com/STAR-Fusion/STAR-Fusion",
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-        "avatar": "https://avatars.githubusercontent.com/u/7536570?v=4",
-        "description": "Generate spectra and lightcurves of a standardized far ultraviolet flare.",
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+        "url": "https://github.com/jakobherpich/pyICs",
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+        "avatar": "https://avatars.githubusercontent.com/u/5030846?v=4",
+        "description": "An initial conditions creator for isolated galaxy formation simulations.",
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-        "url": "https://github.com/parkus/ffd",
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-        "description": "Tools for the analysis of flare frequency distributions for flares detected in heterogenous datasets.",
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+        "description": "Epidemiological Geo-referenced Analysis and Simulation system",
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+        "description": "Library for simulation with mathematical epidemiology models",
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-        "avatar": "https://avatars.githubusercontent.com/u/33225623?v=4",
-        "description": "A Python package for forward asteroseismic modelling of gravity modes",
+        "uid": "github/MNGuenther/allesfitter",
+        "url": "https://github.com/MNGuenther/allesfitter",
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+        "description": "allesfitter is a convenient wrapper around the packages ellc (light curve and RV models), dynesty (static and dynamic nested sampling) emcee (Markov Chain Monte Carlo sampling) and celerite (Gaussian Process models).",
+        "topics": []
+    },
+    {
+        "uid": "github/scikit-learn/scikit-learn",
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+        "avatar": "https://avatars2.githubusercontent.com/u/365630?v=4",
+        "description": "scikit-learn: machine learning in Python",
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             "python",
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-        "description": "Perturbation theory with \"fk\"-Kernels",
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+        "description": "Automated vetting for TESS planet candidates",
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-        "description": "Text mining on the Royal Library newspaper corpus",
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-            "elasticsearch",
-            "dojo"
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+        "description": "The software mainly has three sections:",
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-        "description": "Spherical-collapse model code",
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+        "description": "SUPPNet: Neural network for stellar spectrum normalisation",
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-            "cosmology",
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+        "description": "simple library for dealing with simulation boundary conditions",
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+        "description": "Viral Integrations in Bacterial genomES",
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-        "description": "Continuum fitting for DESI",
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-        "description": "Code for \"HiGNN: A Hierarchical Informative Graph Neural Network for Molecular Property Prediction Equipped with Feature-Wise Attention\"",
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+        "description": "Chemical kinetics, thermodynamics, and transport tool suite",
         "topics": []
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-        "description": "SimSpin - A package for the kinematic analysis of galaxy simulations",
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+        "description": "Assembly of Phylogenomic Datasets from High-Throughput Sequencing data",
         "topics": [
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-            "ifs",
-            "kinematics",
-            "galaxies"
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+            "hybridization-capture",
+            "next-generation-sequencing",
+            "phylogenetics",
+            "rna-seq",
+            "whole-genome-sequencing",
+            "phylotranscriptomics",
+            "targeted-capture",
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-        "description": "Python source code for planetary evolution model described in Krissansen-Totton et al. (2021; AGU Advances)",
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+        "url": "https://github.com/ben-cassese/squishyplanet",
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+        "avatar": "https://avatars.githubusercontent.com/u/10929214?v=4",
+        "description": "Transits of non-spherical exoplanets",
         "topics": []
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-        "description": "pyndl implements a Naive discriminative learning which is a learning and classification models based on the Rescorla-Wagner equations in python3.",
+        "uid": "github/LeoEgidi/pivmet",
+        "url": "https://github.com/LeoEgidi/pivmet",
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-        "description": "Larch: Applications and Python Library for Data Analysis of X-ray Absorption Spectroscopy (XAS, XANES, XAFS, EXAFS), X-ray Fluorescence (XRF) Spectroscopy and Imaging, and more.",
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+        "description": "Asteroid Thermal Modeling",
         "topics": [
             "python",
-            "x-ray-absorption-fine-structure",
-            "x-ray-fluorescence",
-            "x-ray-physics",
-            "synchrotron"
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-            "scientific-computing",
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+        "avatar": "https://avatars.githubusercontent.com/u/22368431?v=4",
+        "description": "A GIMP plug-in to allow for direct generation of semantic segementation masks for use in machine learning projects, using the power of the GIMP selection tools.",
+        "topics": []
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     {
-        "uid": "github/jan-rybizki/gdr2_completeness",
-        "url": "https://github.com/jan-rybizki/gdr2_completeness",
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-        "description": "This package helps with downloading GaiaDR2 data and gives approximate completeness maps over the sky and per G magntude bin. It also has a function to query the GDR2 RVS sample selection function.",
+        "uid": "github/kieranatkins/silique-detector",
+        "url": "https://github.com/kieranatkins/silique-detector",
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+        "description": "Model weights, inference code and phenotyping code associated with the paper \"Deep Learning Phenotyping of Arabidopsis Fruits with QTL Analysis Verification\" by Atkins et al.",
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-        "avatar": "https://avatars.githubusercontent.com/u/25322899?v=4",
-        "description": "A few python scripts and a tutorial notebook to create and manipulate Galaxia mock catalogues",
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+        "description": "MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.",
         "topics": []
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-        "avatar": "https://avatars.githubusercontent.com/u/25322899?v=4",
-        "description": "Start with the Chempy tutorial",
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+        "url": "https://github.com/gem-pasteur/Integron_Finder",
+        "rel": "/software/repository/github/gem-pasteur/Integron_Finder",
+        "avatar": "https://avatars.githubusercontent.com/u/5920106?v=4",
+        "description": "Bioinformatics tool to find integrons in bacterial genomes",
         "topics": [
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-        "description": "Beautiful Algorithms to Normalize Zillions of Astronomical Images",
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+        "description": "a program package designed to provide easily accessible methods for working with complex genetic variation data in the form of VCF files, such as those generated by the 1000 Genomes Project.",
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-        "description": "BANZAI Data Reduction Pipeline for NRES",
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-        "description": "NEO observing portal",
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+        "description": "The Hammer: An IDL Spectral Typing Suite",
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+        "description": "Flares By Eye, an IDL suite for analyzing Kepler light curves and validating flares",
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+        "description": "A software package to reduce angular differential imaging data from Subaru/HiCIAO",
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-        "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
-        "description": "An interactive astronomical 1D spectra analysis tool.",
+        "uid": "github/jordanlab/STing",
+        "url": "https://github.com/jordanlab/STing",
+        "rel": "/software/repository/github/jordanlab/STing",
+        "avatar": "https://avatars2.githubusercontent.com/u/22896069?v=4",
+        "description": "Ultrafast sequence typing and gene detection from NGS raw reads",
         "topics": [
-            "astronomy",
-            "spectroscopy",
-            "viewer",
-            "data-analysis",
-            "python"
+            "mlst",
+            "cgmlst",
+            "kmer",
+            "cpp",
+            "genomics",
+            "computational-biology",
+            "ngs",
+            "ngs-analysis",
+            "genes",
+            "databases",
+            "dna"
         ]
     },
     {
-        "uid": "github/spacetelescope/jdaviz",
-        "url": "https://github.com/spacetelescope/jdaviz",
-        "rel": "/software/repository/github/spacetelescope/jdaviz",
-        "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
-        "description": "JWST astronomical data analysis tools in the Jupyter platform",
+        "uid": "github/ejeschke/ginga",
+        "url": "https://github.com/ejeschke/ginga",
+        "rel": "/software/repository/github/ejeschke/ginga",
+        "avatar": "https://avatars.githubusercontent.com/u/1305473?v=4",
+        "description": "The Ginga astronomical FITS file viewer",
         "topics": []
     },
     {
-        "uid": "github/spacetelescope/specview",
-        "url": "https://github.com/spacetelescope/specview",
-        "rel": "/software/repository/github/spacetelescope/specview",
-        "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
-        "description": "Archived, see https://github.com/spacetelescope/specviz for future development. Spectrum visualization, manipulation,  and fitting",
-        "topics": [
-            "spectroscopy",
-            "astronomy",
-            "viewer",
-            "data-analysis"
-        ]
+        "uid": "github/TeamCOMPAS/COMPAS",
+        "url": "https://github.com/TeamCOMPAS/COMPAS",
+        "rel": "/software/repository/github/TeamCOMPAS/COMPAS",
+        "avatar": "https://avatars.githubusercontent.com/u/22152683?v=4",
+        "description": "COMPAS rapid binary population synthesis code",
+        "topics": []
     },
     {
-        "uid": "github/spacetelescope/mirage",
-        "url": "https://github.com/spacetelescope/mirage",
-        "rel": "/software/repository/github/spacetelescope/mirage",
-        "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
-        "description": "This code can be used to generate simulated NIRCam, NIRISS, or FGS data ",
-        "topics": [
-            "astronomy",
-            "simulator",
-            "nircam",
-            "niriss",
-            "fgs"
-        ]
+        "uid": "github/sfarrens/sf_deconvolve",
+        "url": "https://github.com/sfarrens/sf_deconvolve",
+        "rel": "/software/repository/github/sfarrens/sf_deconvolve",
+        "avatar": "https://avatars.githubusercontent.com/u/6851839?v=4",
+        "description": "A Python code designed for PSF deconvolution using a low-rank approximation and sparsity. The code can handle a fixed PSF for the entire field or a stack of PSFs for each galaxy position.",
+        "topics": []
     },
     {
-        "uid": "github/spacetelescope/stsynphot_refactor",
-        "url": "https://github.com/spacetelescope/stsynphot_refactor",
-        "rel": "/software/repository/github/spacetelescope/stsynphot_refactor",
-        "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
-        "description": "Synthetic photometry using Astropy for HST and JWST",
+        "uid": "github/sfarrens/sfof",
+        "url": "https://github.com/sfarrens/sfof",
+        "rel": "/software/repository/github/sfarrens/sfof",
+        "avatar": "https://avatars.githubusercontent.com/u/6851839?v=4",
+        "description": "SFoF is a friends-of-friends galaxy cluster detection algorithm that operates in either spectroscopic or photometric redshift space. The linking parameters, both transverse and along the line-of-sight, change as a function of redshift to account for selection effects.  The code is written in C++ and implements OMP to loop through the photometric redshift bins.",
         "topics": [
-            "astronomy",
-            "python",
-            "astropy",
-            "synthetic-photometry",
-            "synphot",
-            "hst",
-            "jwst"
+            "redshift",
+            "percolation",
+            "galaxy",
+            "clusters",
+            "cosmology"
         ]
     },
     {
-        "uid": "github/spacetelescope/pystortion",
-        "url": "https://github.com/spacetelescope/pystortion",
-        "rel": "/software/repository/github/spacetelescope/pystortion",
-        "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
-        "description": null,
+        "uid": "github/mjuvela/ISM",
+        "url": "https://github.com/mjuvela/ISM",
+        "rel": "/software/repository/github/mjuvela/ISM",
+        "avatar": "https://avatars.githubusercontent.com/u/46849781?v=4",
+        "description": "Various programs related to interstellar medium (ISM) studies",
         "topics": []
     },
     {
-        "uid": "github/spacetelescope/stginga",
-        "url": "https://github.com/spacetelescope/stginga",
-        "rel": "/software/repository/github/spacetelescope/stginga",
-        "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
-        "description": "Ginga products specific to STScI data analysis.",
-        "topics": [
-            "astronomy",
-            "image",
-            "table",
-            "viewer",
-            "astropy",
-            "ginga"
-        ]
+        "uid": "github/TeamLEGWORK/LEGWORK",
+        "url": "https://github.com/TeamLEGWORK/LEGWORK",
+        "rel": "/software/repository/github/TeamLEGWORK/LEGWORK",
+        "avatar": "https://avatars.githubusercontent.com/u/88508559?v=4",
+        "description": "simple package for gravitational wave calculations ",
+        "topics": []
+    },
+    {
+        "uid": "github/bio-ontology-research-group/deepgoplus",
+        "url": "https://github.com/bio-ontology-research-group/deepgoplus",
+        "rel": "/software/repository/github/bio-ontology-research-group/deepgoplus",
+        "avatar": "https://avatars.githubusercontent.com/u/11040886?v=4",
+        "description": "DeepGO with GOPlus axioms",
+        "topics": []
     },
     {
-        "uid": "github/spacetelescope/stsdas_stripped",
-        "url": "https://github.com/spacetelescope/stsdas_stripped",
-        "rel": "/software/repository/github/spacetelescope/stsdas_stripped",
-        "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
-        "description": "STSDAS/TABLES (nonfunctional / for reference only)",
+        "uid": "github/skovaka/UNCALLED",
+        "url": "https://github.com/skovaka/UNCALLED",
+        "rel": "/software/repository/github/skovaka/UNCALLED",
+        "avatar": "https://avatars.githubusercontent.com/u/1577544?v=4",
+        "description": "Raw nanopore signal mapper that enables real-time targeted sequencing",
         "topics": []
     },
     {
-        "uid": "github/spacetelescope/synphot_refactor",
-        "url": "https://github.com/spacetelescope/synphot_refactor",
-        "rel": "/software/repository/github/spacetelescope/synphot_refactor",
-        "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
-        "description": "Synthetic photometry using Astropy",
+        "uid": "github/RTIInternational/gobbli",
+        "url": "https://github.com/RTIInternational/gobbli",
+        "rel": "/software/repository/github/RTIInternational/gobbli",
+        "avatar": "https://avatars.githubusercontent.com/u/10167032?v=4",
+        "description": "Deep learning with text doesn't have to be scary.",
         "topics": [
-            "astronomy",
-            "astropy",
-            "synthetic-photometry",
+            "docker",
+            "deep-learning",
             "python",
-            "synphot"
+            "nlp"
         ]
     },
     {
-        "uid": "github/spacetelescope/astronify",
-        "url": "https://github.com/spacetelescope/astronify",
-        "rel": "/software/repository/github/spacetelescope/astronify",
-        "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
-        "description": "Astronomical data sonification.",
-        "topics": [
-            "astronomy",
-            "sonification"
-        ]
+        "uid": "github/siavash-saki/tesspy",
+        "url": "https://github.com/siavash-saki/tesspy",
+        "rel": "/software/repository/github/siavash-saki/tesspy",
+        "avatar": "https://avatars.githubusercontent.com/u/54578447?v=4",
+        "description": null,
+        "topics": []
     },
     {
-        "uid": "github/spacetelescope/hst_cosmic_rays",
-        "url": "https://github.com/spacetelescope/hst_cosmic_rays",
-        "rel": "/software/repository/github/spacetelescope/hst_cosmic_rays",
-        "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
+        "uid": "github/MetazoaPhylogenomicsLab/FANTASIA",
+        "url": "https://github.com/MetazoaPhylogenomicsLab/FANTASIA",
+        "rel": "/software/repository/github/MetazoaPhylogenomicsLab/FANTASIA",
+        "avatar": "https://avatars.githubusercontent.com/u/62691665?v=4",
         "description": null,
         "topics": []
     },
     {
-        "uid": "github/spacetelescope/exovetter",
-        "url": "https://github.com/spacetelescope/exovetter",
-        "rel": "/software/repository/github/spacetelescope/exovetter",
-        "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
-        "description": "Exoplanet vetting",
+        "uid": "github/EpiVec/TDLM",
+        "url": "https://github.com/EpiVec/TDLM",
+        "rel": "/software/repository/github/EpiVec/TDLM",
+        "avatar": "https://avatars.githubusercontent.com/u/123465323?v=4",
+        "description": ":package: Systematic comparison of trip distribution laws and models",
         "topics": [
-            "astronomy",
-            "exoplanets",
-            "verification",
-            "exoplanet-transits"
+            "r",
+            "r-package"
         ]
     },
     {
-        "uid": "github/spacetelescope/imexam",
-        "url": "https://github.com/spacetelescope/imexam",
-        "rel": "/software/repository/github/spacetelescope/imexam",
-        "avatar": "https://avatars.githubusercontent.com/u/2751928?v=4",
-        "description": "imexam is a python tool for simple image examination, and plotting, with similar functionality to IRAF's imexamine",
-        "topics": [
-            "astronomy",
-            "data-analysis",
-            "viewer",
-            "astropy",
-            "ds9",
-            "ginga"
-        ]
+        "uid": "github/david-mathews-1994/deltarice",
+        "url": "https://github.com/david-mathews-1994/deltarice",
+        "rel": "/software/repository/github/david-mathews-1994/deltarice",
+        "avatar": "https://avatars.githubusercontent.com/u/120204754?v=4",
+        "description": "A high-performance compression library optimized for up-to 16-bit digitized analog signals",
+        "topics": []
     },
     {
-        "uid": "github/csuhjhjhj/GCNCMI",
-        "url": "https://github.com/csuhjhjhj/GCNCMI",
-        "rel": "/software/repository/github/csuhjhjhj/GCNCMI",
-        "avatar": "https://avatars.githubusercontent.com/u/63285288?v=4",
-        "description": "CircRNA-miRNA interaction Prediction Based on Graph Neural Network",
-        "topics": []
+        "uid": "github/cbirdferrer/collatrix",
+        "url": "https://github.com/cbirdferrer/collatrix",
+        "rel": "/software/repository/github/cbirdferrer/collatrix",
+        "avatar": "https://avatars1.githubusercontent.com/u/30982700?v=4",
+        "description": "this tool collates the outputs of the MorphoMetriX photogrammetry tool",
+        "topics": [
+            "length-measurement",
+            "altitude-calibration",
+            "body-volume",
+            "whales",
+            "photogrammetry",
+            "gui-application",
+            "pyqt5"
+        ]
     },
     {
-        "uid": "github/metaOmics/MetaPath",
-        "url": "https://github.com/metaOmics/MetaPath",
-        "rel": "/software/repository/github/metaOmics/MetaPath",
-        "avatar": "https://avatars.githubusercontent.com/u/32662743?v=4",
-        "description": "Meta analysis pathway enrichment",
+        "uid": "github/eggplantbren/DNest3",
+        "url": "https://github.com/eggplantbren/DNest3",
+        "rel": "/software/repository/github/eggplantbren/DNest3",
+        "avatar": "https://avatars.githubusercontent.com/u/1578298?v=4",
+        "description": "Diffusive Nested Sampling",
         "topics": []
     },
     {
-        "uid": "github/vortex-exoplanet/VIP",
-        "url": "https://github.com/vortex-exoplanet/VIP",
-        "rel": "/software/repository/github/vortex-exoplanet/VIP",
-        "avatar": "https://avatars.githubusercontent.com/u/13556028?v=4",
-        "description": "VIP is a python package/library for angular, reference star and spectral differential imaging for exoplanet/disk detection through high-contrast imaging.",
+        "uid": "github/eggplantbren/DNest4",
+        "url": "https://github.com/eggplantbren/DNest4",
+        "rel": "/software/repository/github/eggplantbren/DNest4",
+        "avatar": "https://avatars.githubusercontent.com/u/1578298?v=4",
+        "description": "Diffusive Nested Sampling",
         "topics": [
-            "data-processing",
-            "high-contrast-imaging",
-            "low-rank-approximation",
-            "image-processing",
-            "extrasolar-planets-disks",
-            "pca",
-            "mcmc"
+            "bayesian-inference",
+            "markov-chain-monte-carlo",
+            "nested-sampling",
+            "probability",
+            "probabilistic-programming"
         ]
     },
     {
-        "uid": "github/heatherprince/cosmoped",
-        "url": "https://github.com/heatherprince/cosmoped",
-        "rel": "/software/repository/github/heatherprince/cosmoped",
-        "avatar": "https://avatars.githubusercontent.com/u/15628365?v=4",
-        "description": "Compressed CMB likelihood code that uses the MOPED (Multiple/Massively Optimised Parameter Estimation and Data compression) compression scheme to compress the Planck power spectrum",
+        "uid": "github/eggplantbren/Exoplanet",
+        "url": "https://github.com/eggplantbren/Exoplanet",
+        "rel": "/software/repository/github/eggplantbren/Exoplanet",
+        "avatar": "https://avatars.githubusercontent.com/u/1578298?v=4",
+        "description": "Exoplanet stuff with RJObject and lookup tables",
         "topics": []
     },
     {
-        "uid": "github/CisnerosResearch/LICHEM",
-        "url": "https://github.com/CisnerosResearch/LICHEM",
-        "rel": "/software/repository/github/CisnerosResearch/LICHEM",
-        "avatar": "https://avatars.githubusercontent.com/u/43679387?v=4",
-        "description": "This package is an open-source (GPLv3) interface between QM and MM software so that QM/MM calculations can be performed with polarizable and frozen electron density force fields. Functionality is also present for standard point-charge based force fields, pure MM, and pure QM calculations.",
+        "uid": "github/eggplantbren/RJObject",
+        "url": "https://github.com/eggplantbren/RJObject",
+        "rel": "/software/repository/github/eggplantbren/RJObject",
+        "avatar": "https://avatars.githubusercontent.com/u/1578298?v=4",
+        "description": "General code for birth/death stuff within DNest3",
         "topics": []
     },
     {
-        "uid": "github/cgrudz/DataAssimilationBenchmarks.jl",
-        "url": "https://github.com/cgrudz/DataAssimilationBenchmarks.jl",
-        "rel": "/software/repository/github/cgrudz/DataAssimilationBenchmarks.jl",
-        "avatar": "https://avatars.githubusercontent.com/u/7243670?v=4",
-        "description": "Package Information and Documentation",
+        "uid": "github/eggplantbren/RMHB",
+        "url": "https://github.com/eggplantbren/RMHB",
+        "rel": "/software/repository/github/eggplantbren/RMHB",
+        "avatar": "https://avatars.githubusercontent.com/u/1578298?v=4",
+        "description": "Source code for 'hierarchical reverberation mapping'",
         "topics": []
     },
     {
-        "uid": "github/parafields/parafields",
-        "url": "https://github.com/parafields/parafields",
-        "rel": "/software/repository/github/parafields/parafields",
-        "avatar": "https://avatars.githubusercontent.com/u/110537507?v=4",
-        "description": "Parallel Parameter Field Generator for Python",
+        "uid": "github/natashabatalha/picaso",
+        "url": "https://github.com/natashabatalha/picaso",
+        "rel": "/software/repository/github/natashabatalha/picaso",
+        "avatar": "https://avatars.githubusercontent.com/u/6554465?v=4",
+        "description": "A Planetary Intensity Code for Atmospheric Spectroscopy Observations",
         "topics": [
-            "hacktoberfest",
-            "iwr-hacktoberfest"
+            "exoplanets",
+            "atmospheric-science",
+            "planetary-science",
+            "scattering",
+            "atmospheres",
+            "direct-imaging",
+            "transmission",
+            "emission",
+            "reflected-light"
         ]
     },
     {
-        "uid": "github/gt1/bambamc",
-        "url": "https://github.com/gt1/bambamc",
-        "rel": "/software/repository/github/gt1/bambamc",
-        "avatar": "https://avatars.githubusercontent.com/u/3490790?v=4",
-        "description": "lightweight C implementation of name collating BAM file input and BAM file output ",
-        "topics": []
-    },
-    {
-        "uid": "github/cupy/cupy",
-        "url": "https://github.com/cupy/cupy",
-        "rel": "/software/repository/github/cupy/cupy",
-        "avatar": "https://avatars2.githubusercontent.com/u/23187665?v=4",
-        "description": "NumPy-like API accelerated with CUDA",
+        "uid": "github/natashabatalha/PandExo",
+        "url": "https://github.com/natashabatalha/PandExo",
+        "rel": "/software/repository/github/natashabatalha/PandExo",
+        "avatar": "https://avatars.githubusercontent.com/u/6554465?v=4",
+        "description": "A Community Tool for Transiting Exoplanet Science with the JWST & HST",
         "topics": [
-            "cuda",
-            "cudnn",
-            "cublas",
-            "cusolver",
-            "nccl",
-            "python",
-            "numpy",
-            "cupy",
-            "curand",
-            "cusparse",
-            "gpu",
-            "cutensor",
-            "scipy",
-            "nvtx",
-            "nvrtc"
+            "exoplanets",
+            "exoplanet-transits",
+            "jwst",
+            "spectroscopy",
+            "binning",
+            "stsci",
+            "hst",
+            "simulator",
+            "astronomy",
+            "astrophysics"
         ]
     },
     {
-        "uid": "github/julie-forman-kay-lab/SPyCi-PDB",
-        "url": "https://github.com/julie-forman-kay-lab/SPyCi-PDB",
-        "rel": "/software/repository/github/julie-forman-kay-lab/SPyCi-PDB",
-        "avatar": "https://avatars.githubusercontent.com/u/53438277?v=4",
-        "description": "Structural Python (Back) Calculator Interface for PDBs",
-        "topics": []
-    },
-    {
-        "uid": "github/ArisTr/PyRaTE",
-        "url": "https://github.com/ArisTr/PyRaTE",
-        "rel": "/software/repository/github/ArisTr/PyRaTE",
-        "avatar": "https://avatars.githubusercontent.com/u/25152725?v=4",
-        "description": "Python Radiative Transfer Emission Code",
+        "uid": "github/morpheus-project/morpheus",
+        "url": "https://github.com/morpheus-project/morpheus",
+        "rel": "/software/repository/github/morpheus-project/morpheus",
+        "avatar": "https://avatars.githubusercontent.com/u/46008492?v=4",
+        "description": "A Library For Generating Morphological Semantic Segmentation Maps of Astronomical Images",
         "topics": []
     },
     {
-        "uid": "github/lgbouma/gyro-interp",
-        "url": "https://github.com/lgbouma/gyro-interp",
-        "rel": "/software/repository/github/lgbouma/gyro-interp",
-        "avatar": "https://avatars.githubusercontent.com/u/13185735?v=4",
-        "description": "Gyrochronology via interpolation of open cluster rotation sequences.",
-        "topics": []
+        "uid": "github/jolie/tquery",
+        "url": "https://github.com/jolie/tquery",
+        "rel": "/software/repository/github/jolie/tquery",
+        "avatar": "https://avatars.githubusercontent.com/u/10729718?v=4",
+        "description": "A data-query framework based on a sound variant of the MongoDB aggregation framework",
+        "topics": [
+            "jolie",
+            "microservices",
+            "data-handling",
+            "ephemeral"
+        ]
     },
     {
-        "uid": "github/MaudeDavidLab/GMEmbeddings",
-        "url": "https://github.com/MaudeDavidLab/GMEmbeddings",
-        "rel": "/software/repository/github/MaudeDavidLab/GMEmbeddings",
-        "avatar": "https://avatars.githubusercontent.com/u/36453608?v=4",
-        "description": null,
+        "uid": "github/brinckmann/montepython_public",
+        "url": "https://github.com/brinckmann/montepython_public",
+        "rel": "/software/repository/github/brinckmann/montepython_public",
+        "avatar": "https://avatars.githubusercontent.com/u/15049519?v=4",
+        "description": "Public repository for the Monte Python Code",
         "topics": []
     },
     {
-        "uid": "github/Mat-dp/mat-dp-core",
-        "url": "https://github.com/Mat-dp/mat-dp-core",
-        "rel": "/software/repository/github/Mat-dp/mat-dp-core",
-        "avatar": "https://avatars.githubusercontent.com/u/104203060?v=4",
-        "description": "Mat-dp core cotains the key methods used in the broader Mat-dp model. Mat-dp aims to deliver user-friendly and open-access software to study the environmental implications of materials used for building low-carbon systems.",
+        "uid": "github/dolaver/calsagos",
+        "url": "https://github.com/dolaver/calsagos",
+        "rel": "/software/repository/github/dolaver/calsagos",
+        "avatar": "https://avatars.githubusercontent.com/u/77640476?v=4",
+        "description": "Config files for my GitHub profile.",
         "topics": [
-            "modelling-tool",
-            "bulk-materials",
-            "critical-materials",
-            "embodied-emissions",
-            "low-carbon-systems",
-            "material-demand"
+            "config",
+            "github-config"
         ]
     },
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         "topics": [
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-        "description": "A package for Multiple criteria decision-making techniques in Julia",
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-            "scenario-data",
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+            "biology",
+            "fish",
+            "fisheries",
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+        "description": "Population Synthesis for Compact-object Lensing Events",
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-        "description": "Formal methods to study Prehistory iconography",
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+        "description": "ARC Echelle Spectroscopic Observation Pipeline (aesop)",
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             "python",
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-        "description": "megaman: Manifold Learning for Millions of Points ",
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-        "description": "Convert 10x BAM files to the original FASTQs compatible with 10x pipelines",
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         "topics": []
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-        "description": "The PSL software from the University of Maryland and the University of California Santa Cruz",
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-        "description": "A simple implementation of the orange-slice algorithm for fitting brightness maps to phase curves (from Cowan and Agol 2008) extended to also handle reflected light (Mayorga et al. 2020).",
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+        "description": ":package: R/haldensify: Highly Adaptive Lasso Conditional Density Estimation",
         "topics": [
-            "astronomy-astrophysics",
-            "python"
+            "machine-learning",
+            "density-estimation",
+            "nonparametric-regression",
+            "highly-adaptive-lasso",
+            "propensity-score",
+            "conditional-density-estimates",
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-        "description": "Motif manipulation functions for R.",
+        "uid": "github/nhejazi/txshift",
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+        "rel": "/software/repository/github/nhejazi/txshift",
+        "avatar": "https://avatars0.githubusercontent.com/u/8527276?v=4",
+        "description": ":package: :game_die: R/txshift: Efficient Estimation of the Causal Effects of Stochastic Interventions, with Two-Phase Sampling Corrections",
+        "topics": [
+            "causal-inference",
+            "targeted-learning",
+            "machine-learning",
+            "stochastic-interventions",
+            "treatment-effects",
+            "variable-importance",
+            "censored-data",
+            "causal-effects",
+            "statistics",
+            "robust-statistics",
+            "stochastic-treatment-regimes"
+        ]
+    },
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+        "uid": "github/nhejazi/medoutcon",
+        "url": "https://github.com/nhejazi/medoutcon",
+        "rel": "/software/repository/github/nhejazi/medoutcon",
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+        "description": ":package: R/medoutcon: Efficient Causal Mediation Analysis with Natural and Interventional Direct/Indirect Effects",
         "topics": [
+            "causal-inference",
+            "mediation-analysis",
+            "stochastic-interventions",
+            "machine-learning",
+            "targeted-learning",
+            "inverse-probability-weights",
+            "treatment-effects",
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-            "motif-enrichment-analysis",
-            "sequence-logo"
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-        "url": "https://github.com/jonathanHuwP/CrystalGrowthTracker",
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-        "avatar": "https://avatars.githubusercontent.com/u/63852810?v=4",
-        "description": "Extract face growth rate data from x-ray video of growing crystals.",
+        "uid": "github/PyTorchLightning/metrics",
+        "url": "https://github.com/PyTorchLightning/metrics",
+        "rel": "/software/repository/github/PyTorchLightning/metrics",
+        "avatar": "https://avatars.githubusercontent.com/u/58386951?v=4",
+        "description": "Machine learning metrics for distributed, scalable PyTorch applications.",
+        "topics": [
+            "python",
+            "data-science",
+            "machine-learning",
+            "pytorch",
+            "deep-learning",
+            "metrics",
+            "analyses"
+        ]
+    },
+    {
+        "uid": "github/TimothyADavis/GAStimator",
+        "url": "https://github.com/TimothyADavis/GAStimator",
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         "topics": []
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-        "avatar": "https://avatars.githubusercontent.com/u/1459392?v=4",
-        "description": "Population Synthesis for Compact-object Lensing Events",
+        "uid": "github/TimothyADavis/KinMSpy",
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-        "avatar": "https://avatars.githubusercontent.com/u/12699391?v=4",
-        "description": "Efficient analysis of bandwidth coverage and spectral lines for finding z-specs",
+        "uid": "github/ranocha/SummationByPartsOperators.jl",
+        "url": "https://github.com/ranocha/SummationByPartsOperators.jl",
+        "rel": "/software/repository/github/ranocha/SummationByPartsOperators.jl",
+        "avatar": "https://avatars.githubusercontent.com/u/12693098?v=4",
+        "description": "A Julia library of summation-by-parts (SBP) operators used in finite difference, Fourier pseudospectral, continuous Galerkin, and discontinuous Galerkin methods to get provably stable semidiscretizations, paying special attention to boundary conditions.",
+        "topics": [
+            "finite-difference",
+            "summation-by-parts",
+            "sbp",
+            "boundary-conditions",
+            "julia",
+            "hacktoberfest",
+            "discontinuous-galerkin",
+            "continuous-galerkin",
+            "fourier",
+            "derivative-operator",
+            "dgsem",
+            "cgsem"
+        ]
+    },
+    {
+        "uid": "github/PyTables/PyTables",
+        "url": "https://github.com/PyTables/PyTables",
+        "rel": "/software/repository/github/PyTables/PyTables",
+        "avatar": "https://avatars1.githubusercontent.com/u/828302?v=4",
+        "description": "A Python package to manage extremely large amounts of data",
         "topics": []
     },
     {
-        "uid": "github/ladsantos/flatstar",
-        "url": "https://github.com/ladsantos/flatstar",
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-        "avatar": "https://avatars.githubusercontent.com/u/2818188?v=4",
-        "description": "Make 2d intensity maps of limb-darkened stars.",
+        "uid": "github/muLAn-project/muLAn",
+        "url": "https://github.com/muLAn-project/muLAn",
+        "rel": "/software/repository/github/muLAn-project/muLAn",
+        "avatar": "https://avatars.githubusercontent.com/u/29952484?v=4",
+        "description": "muLAn: MICROlensing Analysis software",
         "topics": [
+            "microlensing",
+            "modelling",
             "astronomy",
-            "limb-darkening",
-            "stars",
-            "astrophysics",
-            "planetary-transits"
+            "science"
         ]
     },
     {
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-        "avatar": "https://avatars.githubusercontent.com/u/2818188?v=4",
-        "description": "Python implementation of Parker wind models for exoplanet atmospheres",
+        "uid": "github/Ouranosinc/xclim",
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+        "avatar": "https://avatars.githubusercontent.com/u/1696763?v=4",
+        "description": "Library of derived climate variables, ie climate indicators, based on xarray. ",
         "topics": [
-            "astronomy",
-            "exoplanet",
-            "exoplanet-atmospheres",
-            "atmosphere",
-            "astrophysics"
+            "climate-analysis",
+            "climate-science",
+            "python",
+            "xarray",
+            "icclim",
+            "netcdf4",
+            "xclim",
+            "anuclim",
+            "dask"
         ]
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-        "avatar": "https://avatars.githubusercontent.com/u/25656809?v=4",
-        "description": "tidyverse and ggplot2 methods for terra spatial objects",
+        "uid": "github/VincentAlcazer/StatAid",
+        "url": "https://github.com/VincentAlcazer/StatAid",
+        "rel": "/software/repository/github/VincentAlcazer/StatAid",
+        "avatar": "https://avatars0.githubusercontent.com/u/63184395?v=4",
+        "description": "StatAid is a Shiny app built in an R package to guide researchers and clinicians through data analysis",
         "topics": [
-            "ggplot-extension",
-            "r-package",
-            "r-spatial",
-            "rspatial",
-            "rstats",
-            "rstats-package",
-            "terra",
-            "cran",
-            "cran-r",
-            "r"
+            "data-analysis",
+            "r",
+            "statistics",
+            "life-sciences"
         ]
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-        "uid": "github/najoshi/sickle",
-        "url": "https://github.com/najoshi/sickle",
-        "rel": "/software/repository/github/najoshi/sickle",
-        "avatar": "https://avatars.githubusercontent.com/u/607905?v=4",
-        "description": "Windowed Adaptive Trimming for fastq files using quality",
+        "uid": "github/tylertrimble/viswaternet",
+        "url": "https://github.com/tylertrimble/viswaternet",
+        "rel": "/software/repository/github/tylertrimble/viswaternet",
+        "avatar": "https://avatars.githubusercontent.com/u/102005076?v=4",
+        "description": "A Python package for easy generation and customization of water distribution network visualizations.",
         "topics": []
     },
     {
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-        "url": "https://github.com/valentineap/pyprop8",
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-        "description": "A lightweight  Python code to calculate the seismic response of a layered half-space (including static components), and derivatives of the wavefield wrt source components.",
+        "uid": "github/dealii/dealii",
+        "url": "https://github.com/dealii/dealii",
+        "rel": "/software/repository/github/dealii/dealii",
+        "avatar": "https://avatars.githubusercontent.com/u/7506070?v=4",
+        "description": "The development repository for the deal.II finite element library.",
+        "topics": [
+            "finite-elements",
+            "c-plus-plus"
+        ]
+    },
+    {
+        "uid": "github/CliMA/CalibrateEmulateSample.jl",
+        "url": "https://github.com/CliMA/CalibrateEmulateSample.jl",
+        "rel": "/software/repository/github/CliMA/CalibrateEmulateSample.jl",
+        "avatar": "https://avatars.githubusercontent.com/u/43161188?v=4",
+        "description": "Stochastic Optimization, Learning, Uncertainty and Sampling",
         "topics": []
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-        "uid": "github/forceflow1049/phast",
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-        "avatar": "https://avatars.githubusercontent.com/u/1127046?v=4",
-        "description": "PhAst: A flexible IDL astronomical image viewer",
+        "uid": "github/CliMA/EnsembleKalmanProcesses.jl",
+        "url": "https://github.com/CliMA/EnsembleKalmanProcesses.jl",
+        "rel": "/software/repository/github/CliMA/EnsembleKalmanProcesses.jl",
+        "avatar": "https://avatars.githubusercontent.com/u/43161188?v=4",
+        "description": "Implements Optimization and approximate uncertainty quantification algorithms, Ensemble Kalman Inversion, and Ensemble Kalman Processes.",
         "topics": []
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     {
-        "uid": "github/GalSim-developers/GalSim",
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-        "avatar": "https://avatars.githubusercontent.com/u/1462196?v=4",
-        "description": "The modular galaxy image simulation toolkit.  Documentation:",
+        "uid": "github/undark-lab/swyft",
+        "url": "https://github.com/undark-lab/swyft",
+        "rel": "/software/repository/github/undark-lab/swyft",
+        "avatar": "https://avatars.githubusercontent.com/u/75046902?v=4",
+        "description": "Truncated marginal neural ratio estimation estimation with PyTorch.",
         "topics": [
+            "pytorch",
             "python",
-            "c-plus-plus",
-            "astronomy",
-            "galaxy",
-            "simulation",
-            "simulate-images",
-            "weaklensing",
-            "lsst",
-            "des",
-            "wfirst",
-            "euclid"
+            "simulation-based",
+            "inference"
         ]
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-        "uid": "github/KathrynJones1/catwoman",
-        "url": "https://github.com/KathrynJones1/catwoman",
-        "rel": "/software/repository/github/KathrynJones1/catwoman",
-        "avatar": "https://avatars3.githubusercontent.com/u/53044821?v=4",
-        "description": "A transit modelling Python package for asymmetric light curves",
+        "uid": "github/undark-lab/albatross",
+        "url": "https://github.com/undark-lab/albatross",
+        "rel": "/software/repository/github/undark-lab/albatross",
+        "avatar": "https://avatars.githubusercontent.com/u/75046902?v=4",
+        "description": "A simulation-based Inference (SBI) library designed to perform analysis on stellar streams in the Milky Way",
         "topics": []
     },
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-        "uid": "github/PabloMSanAla/fabada",
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-        "description": "Fully Adaptive Bayesian Algorithm for Data Analysis (FABADA) is a new approach of noise reduction methods. In this repository is shown the package developed for this new method based on \\citepaper.",
-        "topics": [
-            "python",
-            "noise-reduction",
-            "astronomy"
-        ]
+        "uid": "github/undark-lab/sstrax",
+        "url": "https://github.com/undark-lab/sstrax",
+        "rel": "/software/repository/github/undark-lab/sstrax",
+        "avatar": "https://avatars.githubusercontent.com/u/75046902?v=4",
+        "description": "A jax-accelerated modelling code for Milky Way stellar streams",
+        "topics": []
     },
     {
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-        "url": "https://github.com/0x0f0f0f/Metatheory.jl",
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-        "avatar": "https://avatars.githubusercontent.com/u/17289614?v=4",
-        "description": "General purpose metaprogramming and algebraic computation library for the Julia programming language",
+        "uid": "github/QuaCaTeam/quaca",
+        "url": "https://github.com/QuaCaTeam/quaca",
+        "rel": "/software/repository/github/QuaCaTeam/quaca",
+        "avatar": "https://avatars.githubusercontent.com/u/65653300?v=4",
+        "description": "QuaCa is an open-source library which provides fast calculations of nonequilibrium atom-surface interactions.",
         "topics": [
-            "julia",
-            "symbolic",
-            "symbolic-computation",
-            "algebraic",
-            "cas",
-            "metatheory",
-            "programming-language",
-            "optimization",
-            "compiler-optimization",
-            "compiler-construction"
+            "physics",
+            "fluctuations",
+            "integration",
+            "casimir",
+            "quantum"
         ]
     },
     {
@@ -42474,765 +41794,684 @@
         ]
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+        "description": "Deep learning toolkit for Drug Design with Pareto-based Multi-Objective optimization in Polypharmacology",
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+        "avatar": "https://avatars.githubusercontent.com/u/516060?v=4",
+        "description": "\ud83d\udc19 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results",
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+            "metagenomics"
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+        "avatar": "https://avatars.githubusercontent.com/u/11615315?v=4",
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+        "avatar": "https://avatars.githubusercontent.com/u/20717981?v=4",
+        "description": "Native Julia I/O package to work with CERN ROOT files",
         "topics": [
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-            "forecast-evaluation",
-            "forecast-verification",
-            "forecasting",
-            "model-validation",
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-            "python",
-            "xarray",
-            "climate",
-            "oceanography",
-            "weather",
-            "verification",
-            "contingency-table"
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+            "julia",
+            "analysis",
+            "bigdata",
+            "particle-physics",
+            "hep",
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+            "high-energy-physics",
+            "hacktoberfest"
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     {
@@ -43244,2245 +42483,2278 @@
         "topics": []
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+        "description": "PyStokes: phoresis and Stokesian hydrodynamics in Python: https://github.com/rajeshrinet/pystokes",
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-            "deformation",
-            "squeesar",
-            "phase-linking",
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-            "geospatial-processing",
-            "remote-sensing"
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+            "force-fields",
+            "stokesian-hydrodynamics",
+            "active-particles",
+            "colloids",
+            "stokes-flow",
+            "traction",
+            "python",
+            "cython",
+            "phase-separation",
+            "crystallization",
+            "pystokes",
+            "active-colloids",
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             "power-spectrum",
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-        "description": "A notebook and data associated with the paper Taylor, Simon, Sampson (2017)",
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+        "description": "Surjection layers for density estimation with normalizing flows",
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-        "description": "Convert 3D NIfTI images (and other formats supported by ITK) to DICOM 2D series",
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-        "description": "Open Source Photometric classification https://supernnova.readthedocs.io",
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-            "pandas",
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-        "description": "Software for digital twin research",
+        "uid": "github/johnlees/PopPUNK",
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+        "description": "PopPUNK \ud83d\udc68\u200d\ud83c\udfa4 (POPulation Partitioning Using Nucleotide Kmers)",
+        "topics": [
+            "bacteria",
+            "genomics",
+            "population-genetics",
+            "k-mer",
+            "sketching"
+        ]
+    },
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+        "description": "Python package to fit relative astrometry with background star motion tracks. ",
         "topics": []
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-        "description": "A toolbox for extracting the 21cm signal from the simulated mock observation for REACH.",
+        "uid": "github/GenomePathogenAnalysisService/read-it-and-keep",
+        "url": "https://github.com/GlobalPathogenAnalysisService/read-it-and-keep",
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+        "description": "Read contamination removal",
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-        "url": "https://github.com/ismael-mendoza/ShapeMeasurementFisherFormalism",
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-        "description": "Fisher Formalism for Weak Lensing using 1 or 2 Galsim galaxies.",
+        "uid": "github/nekokoe/Plasmer",
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+        "avatar": "https://avatars.githubusercontent.com/u/3713987?v=4",
+        "description": "An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.",
         "topics": [
-            "galsim",
-            "fisher-formalism",
-            "cosmology"
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-        "uid": "github/dgobbi/vtk-dicom",
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-        "description": "A set of classes for using DICOM in VTK.",
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-        "description": "Automatically exported from code.google.com/p/big-macs-calibrate",
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+        "description": "Swift Accel-Amplicon primer trimming tool for fast alignment-based primer trimming",
         "topics": []
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-        "uid": "github/czbiohub-sf/Rapid-QC-MS",
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-        "avatar": "https://avatars.githubusercontent.com/u/28747162?v=4",
-        "description": "Realtime quality control for mass spectrometry data acquisition",
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+        "rel": "/software/repository/github/tornede/py_experimenter",
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+        "description": "The PyExperimenter is a tool for the automatic execution of experiments, e.g. for machine learning (ML), capturing corresponding results in a unified manner in a database. ",
         "topics": [
-            "mass-spectrometry",
-            "plotly-dash",
-            "metabolomics"
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+            "executor",
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         ]
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-        "uid": "github/kingyin3613/RingsPy",
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-        "description": "A Python automated geometric generation tool that generates 3D meshes of prismatic cellular solids with radial growth rules based on Voronoi diagrams.",
+        "uid": "github/clemson-cal/sailfish",
+        "url": "https://github.com/clemson-cal/sailfish",
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+        "avatar": "https://avatars.githubusercontent.com/u/70648863?v=4",
+        "description": "GPU-accelerated astrophysics gas dynamics code",
         "topics": []
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-        "avatar": "https://avatars.githubusercontent.com/u/6616486?v=4",
-        "description": "Package for modeling X-ray surface brightness profiles.",
+        "uid": "github/PanKonstantinos/MEvA-X",
+        "url": "https://github.com/PanKonstantinos/MEvA-X",
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+        "avatar": "https://avatars.githubusercontent.com/u/26748316?v=4",
+        "description": "Open source Biomarker discovery tool based on multi-objective Evolutionary algorithm and the XGBoost Classifier",
         "topics": []
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     {
-        "uid": "github/NickMilsonPhysics/BinaryStarSolver",
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-        "description": "BinaryStarSolver is a Python 3 program which solves for the orbital elements of binary stars, given radial velocity time series",
+        "uid": "github/BU-hammerTeam/PyHammer",
+        "url": "https://github.com/BU-hammerTeam/PyHammer",
+        "rel": "/software/repository/github/BU-hammerTeam/PyHammer",
+        "avatar": "https://avatars.githubusercontent.com/u/21038240?v=4",
+        "description": "A Python Spectral Typing Suite",
         "topics": [
-            "astronomy",
-            "binary-stars",
-            "radial-velocity",
-            "rv",
-            "orbit"
+            "spectral-types",
+            "metallicity",
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+            "spectral-lines"
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-        "avatar": "https://avatars.githubusercontent.com/u/8554835?v=4",
-        "description": "Imperial Metabolic Profiling and Chemometrics Toolbox for Spectroscopy",
+        "uid": "github/infer-actively/pymdp",
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+        "description": "A Python implementation of active inference for Markov Decision Processes",
         "topics": []
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-        "url": "https://github.com/shaniAmare/long_read_tools",
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-        "avatar": "https://avatars1.githubusercontent.com/u/43805905?v=4",
-        "description": "A catalogue of available long read sequencing data analysis tools",
+        "uid": "github/kuenzelab/ENDURE",
+        "url": "https://github.com/kuenzelab/ENDURE",
+        "rel": "/software/repository/github/kuenzelab/ENDURE",
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+        "description": "Tool for energy breakdown analysis of protein designs",
         "topics": []
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-        "uid": "github/RafaelSdeSouza/qrpca",
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-        "avatar": "https://avatars.githubusercontent.com/u/3153856?v=4",
-        "description": "QR based Principal Components Analysis",
+        "uid": "github/GeneDx/scramble",
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+        "rel": "/software/repository/github/GeneDx/scramble",
+        "avatar": "https://avatars.githubusercontent.com/u/43077724?v=4",
+        "description": "runs as a two-step process. First cluster_identifier is used to generate soft-clipped read cluster consensus sequences. Second, SCRAMBle-MEIs.R analyzes the cluster file for likely Mobile Element Insertions.",
+        "topics": []
+    },
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+        "uid": "github/dynamicslab/pysindy",
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+        "description": "A package for the sparse identification of nonlinear dynamical systems from data",
         "topics": [
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-            "r",
-            "dimensionality-reduction"
+            "dynamical-systems",
+            "machine-learning",
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-        "description": "An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.",
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+        "description": "pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.",
+        "topics": [
+            "single-cell",
+            "transcriptomics",
+            "gene-regulatory-network",
+            "transcription-factors"
+        ]
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+        "avatar": "https://avatars.githubusercontent.com/u/12547184?v=4",
+        "description": "Linguistic Phylogenetic Analysis in R",
         "topics": []
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-        "description": "Machine Learning pipeline to classify astronomical sources into galaxies, quasars and stars using photometric data.",
+        "uid": "github/JorenSix/Panako",
+        "url": "https://github.com/JorenSix/Panako",
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+        "description": "The Panako acoustic fingerprinting system.",
         "topics": [
-            "astronomy",
-            "astronomy-software",
-            "classification",
-            "machine-learning",
-            "photometric-redshifts",
-            "photometry"
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+            "acoustic-fingerprinting",
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+        "avatar": "https://avatars.githubusercontent.com/u/60453?v=4",
+        "description": "Olaf: Overly Lightweight Acoustic Fingerprinting is a portable acoustic fingerprinting system.",
+        "topics": [
+            "music-information-retrieval",
+            "audio-fingerprinting",
+            "acoustic-fingerprinting",
+            "wasm",
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-        "description": "CeRULEo: Comprehensive utilitiEs for Remaining Useful Life Estimation methOds",
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+        "description": "Synchrotron peak estimator for blazars",
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-            "time-series",
-            "remaining-useful-life",
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-        "description": "Object-oriented Scientific Computing Library",
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-        "description": "Bayesian Analysis of neutron star Mass and Radius observations",
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-        "description": "Blazing fast nuclei segmentation for brightfield Whole Slide Images",
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-        "description": "A moving-mesh magnetohydrodynamics code designed for the study of astrophysical disks.",
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+        "description": "A hybrid parallel C++ code to compute structure function of different order",
+        "topics": []
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         "topics": [
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-            "cosmology",
-            "wolfram-mathematica"
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+        "description": "Materials data streaming applications, written in Python using Apache Kafka, with a focus on deployment in laboratory environments",
+        "topics": []
+    },
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+        "uid": "github/JuBiotech/peak-performance",
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-            "measurement-set",
-            "casa",
-            "pipeline",
-            "python",
-            "gmrt",
-            "radio-telescopes",
-            "automated"
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+            "liquid-chromatography",
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+        "description": "Anomaly Detector for ALeRCE broker \ud83e\udd16",
         "topics": []
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     {
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-        "description": "The Journal of Open Source Software",
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-            "open-access",
-            "scientific-journals",
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-            "publishing",
-            "academia",
-            "academic"
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+            "machine-learning",
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+            "gaia-dr2",
+            "mission-gaia",
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-        "description": "Code to compute the determinant of aspherical fluctuations in spherical collapse background",
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-        "description": "CLASS extension that incorporates a model with Lorentz invariance violation in gravity and dark matter",
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-            "registration",
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+        "description": "A package for the design of numerical ODE solvers",
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+        "description": "Leja Exponential Integrators",
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     {
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-        "description": "Tools for detecting DNA modifications from single molecule, real-time sequencing data",
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-        "description": "BLASR (Basic Local Alignment with Successive Refinement) maps Single Molecule Sequencing (SMS) reads that are thousands of bases long, with divergence between the read and genome dominated by insertion and deletion error.",
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+        "avatar": "https://avatars.githubusercontent.com/u/65170433?v=4",
+        "description": "This web app is intended for demo purposes only!",
         "topics": []
     },
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-        "description": "A Python library for reading and writing PacBio\u00ae data files",
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+        "description": "MiraPy: A Python package for Deep Learning in Astronomy",
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+            "astronomy",
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+            "x-ray-binaries",
+            "image-reconstruction",
+            "variable-stars"
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     },
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     },
     {
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+        "description": "Repository for software detailed in 'Rainbow: Automated Air-Liquid Interface Cell Culture Analysis Using Deep Optical Flow' software paper. See Readme for more details.",
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+        "description": "C# template-based photometric redshift estimation framework",
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     },
     {
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     },
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+        "description": "Latest stable implemention of ASTROMER ",
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+    },
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+        "description": "Tools to apply theoretical constraints of orbital stability and tidal migration to KOI exomoon candidates. ",
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+    },
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-        "description": "Fast and flexible physics-based battery models in Python",
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+        "description": "An Open-Source End-to-End Pipeline for Spiral Magnetic Resonance Image (MRI) Reconstruction in Julia",
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-            "pdes",
-            "partial-differential-equations",
-            "finite-elements",
-            "numerical-methods",
-            "gridap"
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+            "bioinformatics-tool",
+            "genomics",
+            "streaming",
+            "linux-pipes",
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-        "url": "https://github.com/samhforbes/PupillometryR",
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-        "avatar": "https://avatars3.githubusercontent.com/u/18288098?v=4",
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+        "description": "Mirror of lukasturcani/stk - please file issues / fork / star that repo. ",
+        "topics": []
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+        "uid": "github/basehc/IPEV",
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+        "description": "Software tool to identify prokaryotic and eukaryotic virus-derived sequences in virome using deep learning. Used to calculate a set of scores that reflect the probability that input sequence fragments are prokaryotic and eukaryotic viral sequences.",
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-        "description": "code and script for Locus Algorithm",
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+        "description": "General-purpose phase-type functions",
         "topics": []
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-        "url": "https://github.com/ernewton/tellrv",
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-        "description": "Radial velocities for low-resolution NIR spectra using telluric features to provide absolute wavelength calibration",
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+        "url": "https://github.com/fkiwy/Finder_charts",
+        "rel": "/software/repository/github/fkiwy/Finder_charts",
+        "avatar": "https://avatars.githubusercontent.com/u/54667906?v=4",
+        "description": "A Python module to create finder charts from image data of various sky surveys",
         "topics": []
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     {
-        "uid": "github/Open-Minds-Lab/MRdataset",
-        "url": "https://github.com/Open-Minds-Lab/MRdataset",
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-            "mri",
-            "neuroscience",
-            "quality-control",
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+        "url": "https://github.com/fkiwy/AstroToolBox",
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+        "description": "Java tool set for the identification and classification of astronomical objects with a focus on low-mass stars and ultra-cool dwarfs",
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-        "uid": "github/datngu/Circall",
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-        "avatar": "https://avatars.githubusercontent.com/u/59732388?v=4",
-        "description": "Circall is a novel method to discover circular RNA from paired-end RNA sequencing data",
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+        "url": "https://github.com/fkiwy/unTimely_Catalog_explorer",
+        "rel": "/software/repository/github/fkiwy/unTimely_Catalog_explorer",
+        "avatar": "https://avatars.githubusercontent.com/u/54667906?v=4",
+        "description": "A search and visualization tool for the unTimely Catalog",
         "topics": []
     },
     {
-        "uid": "github/BlueBrain/BlueCelluLab",
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-        "avatar": "https://avatars.githubusercontent.com/u/1479142?v=4",
-        "description": "Biologically detailed neural network simulations and analysis API",
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+        "url": "https://github.com/brentp/somalier",
+        "rel": "/software/repository/github/brentp/somalier",
+        "avatar": "https://avatars.githubusercontent.com/u/1739?v=4",
+        "description": "fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... \"like damn that is one smart wine guy\"",
         "topics": [
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-            "brain",
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-            "neuroscience",
-            "python",
-            "simulation",
-            "circuit",
-            "emodel",
-            "api",
-            "connection",
-            "network"
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+            "bioinformatics",
+            "genomics"
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-        "url": "https://github.com/HeracleBT/vEMstitch",
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+        "rel": "/software/repository/github/brentp/goleft",
+        "avatar": "https://avatars.githubusercontent.com/u/1739?v=4",
+        "description": "goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary",
+        "topics": [
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+            "bioinformatics",
+            "coverage",
+            "golang",
+            "depth"
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-        "url": "https://github.com/aimalz/qp",
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-        "avatar": "https://avatars.githubusercontent.com/u/8606810?v=4",
-        "description": "Quantile Parametrization for probability distribution functions module",
-        "topics": []
+        "uid": "github/brentp/vcfanno",
+        "url": "https://github.com/brentp/vcfanno",
+        "rel": "/software/repository/github/brentp/vcfanno",
+        "avatar": "https://avatars.githubusercontent.com/u/1739?v=4",
+        "description": "annotate a VCF with other VCFs/BEDs/tabixed files ",
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+            "vcf",
+            "annotation",
+            "genomics"
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-        "url": "https://github.com/tyo-nu/MINE-app",
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-        "avatar": "https://avatars.githubusercontent.com/u/25189699?v=4",
-        "description": "Web application for the MINE databases",
+        "uid": "github/brentp/peddy",
+        "url": "https://github.com/brentp/peddy",
+        "rel": "/software/repository/github/brentp/peddy",
+        "avatar": "https://avatars.githubusercontent.com/u/1739?v=4",
+        "description": "genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF",
         "topics": [
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-            "metabolomics"
+            "genomics",
+            "vcf",
+            "bioinformatics",
+            "pedigree",
+            "genotype",
+            "ancestry"
         ]
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+        "avatar": "https://avatars.githubusercontent.com/u/1739?v=4",
+        "description": "nim wrapper for Heng Li's kexpr math expression evaluator library",
+        "topics": [
+            "nim-lang",
+            "math-expressions",
+            "math",
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-        "avatar": "https://avatars0.githubusercontent.com/u/47579697?v=4",
-        "description": "A python package for creating mock maps of astrophysical signals from a halo catalog",
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+        "url": "https://github.com/brentp/cyvcf2",
+        "rel": "/software/repository/github/brentp/cyvcf2",
+        "avatar": "https://avatars.githubusercontent.com/u/1739?v=4",
+        "description": "a cython wrapper around htslib built for fast parsing of Variant Call Format (VCF) files.",
         "topics": [
-            "cosmology",
-            "astrophysical-signals",
-            "halo-catalog",
-            "python",
-            "simulation-toolkit"
+            "vcf",
+            "htslib",
+            "cython",
+            "genomics",
+            "bioinformatics"
         ]
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-        "uid": "github/mzkhalid039/DWBuilder",
-        "url": "https://github.com/mzkhalid039/DWBuilder",
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-        "avatar": "https://avatars.githubusercontent.com/u/52278972?v=4",
-        "description": "Ferroelectric/Ferroelastic domain wall builder",
+        "uid": "github/brentp/hts-nim-tools",
+        "url": "https://github.com/brentp/hts-nim-tools",
+        "rel": "/software/repository/github/brentp/hts-nim-tools",
+        "avatar": "https://avatars.githubusercontent.com/u/1739?v=4",
+        "description": "useful command-line tools written to showcase hts-nim",
         "topics": [
-            "ferroelectric-domains",
-            "ferroelectrics",
-            "domain-walls",
-            "atomic",
-            "interface-builder"
+            "genomics",
+            "bioinformatics",
+            "nim",
+            "nim-lang",
+            "bam",
+            "vcf",
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-        "uid": "github/kiyo-masui/bitshuffle",
-        "url": "https://github.com/kiyo-masui/bitshuffle",
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-        "description": "Filter for improving compression of typed binary data.",
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+        "url": "https://github.com/brentp/mosdepth",
+        "rel": "/software/repository/github/brentp/mosdepth",
+        "avatar": "https://avatars.githubusercontent.com/u/1739?v=4",
+        "description": "fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing",
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+            "genome",
+            "depth",
+            "exome",
+            "wgs",
+            "sequencing",
+            "nim",
+            "nim-lang",
+            "hacktoberfest"
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-        "description": "A python package that enables simple simulation and Bayesian posterior analysis of nuclear-recoil data from dark matter direct detection experiments for a wide variety of theories of dark matter-nucleon interactions.",
+        "uid": "github/brentp/cigar",
+        "url": "https://github.com/brentp/cigar",
+        "rel": "/software/repository/github/brentp/cigar",
+        "avatar": "https://avatars.githubusercontent.com/u/1739?v=4",
+        "description": "simple library for dealing with SAM cigar strings",
         "topics": []
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-        "url": "https://github.com/neuroneural/brainchop",
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-        "description": "Brainchop: In-browser 3D MRI rendering and segmentation",
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+        "url": "https://github.com/brentp/smoove",
+        "rel": "/software/repository/github/brentp/smoove",
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-            "pyodide",
-            "tensorflowjs",
-            "three-js",
-            "medical-imaging",
-            "mri",
-            "mri-segmentation"
+            "structural-variation",
+            "genomics",
+            "lumpy"
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-        "description": "Caustic Mass Estimator for Galaxy Clusters",
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-        "description": "Dynamic Nested Sampling package for computing Bayesian posteriors and evidences",
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+        "url": "https://github.com/brentp/nim-lapper",
+        "rel": "/software/repository/github/brentp/nim-lapper",
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+        "description": "fast easy interval overlapping for nim-lang",
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-            "pure-python",
-            "mit-license",
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+            "nim",
+            "overlap"
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-        "description": "A code to compute the abundances of chemical species in the interstellar medium",
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+        "url": "https://github.com/Anirbancosmo/Limpy",
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         "topics": []
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+        "description": "A code for velocity-based Lagrangian and Eulerian PT expansions of redshift-space distortions.",
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-            "kepler",
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-            "k2-data-science",
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-        "description": "interpretable gaussian processes for stellar light curves",
+        "uid": "github/BiodataAnalysisGroup/kmerAnalyzer",
+        "url": "https://github.com/BiodataAnalysisGroup/kmerAnalyzer",
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+        "avatar": "https://avatars.githubusercontent.com/u/9251685?v=4",
+        "description": "An alignment-free method capable of processing and counting k-mers in a reasonable time, while evaluating multiple values of the k parameter concurrently.",
         "topics": [
-            "gaussian-processes",
-            "lightcurves",
-            "timeseries-analysis",
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-        "description": "A general photodynamical code for exoplanet light curves",
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-            "exoplanet-transits",
-            "light-curves",
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+        "uid": "github/BiodataAnalysisGroup/UMIc",
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+        "description": "A framework implementing a method for UMI deduplication and reads correction.",
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-        "uid": "github/BartoszBartmanski/StoSpa2",
-        "url": "https://github.com/BartoszBartmanski/StoSpa2",
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-        "avatar": "https://avatars2.githubusercontent.com/u/16625050?v=4",
-        "description": "A C++ software package for stochastic simulations of spatially extended systems",
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-        "uid": "github/berczik/phi-GPU-mole",
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-        "description": "Parallel Hermite Integration on GPU (Direct N-body on MOLE-8.5 cluster)",
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+        "uid": "github/samuelefiorini/tangle",
+        "url": "https://github.com/samuelefiorini/tangle",
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+        "description": "TANGLE: Time spAN Guided neuraL attEntion model",
+        "topics": [
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+            "data-science",
+            "healthcare",
+            "medicare",
+            "pharmaceuticals",
+            "australia"
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-        "uid": "github/JakobBD/pounce",
-        "url": "https://github.com/JakobBD/pounce",
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-        "description": null,
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+        "avatar": "https://avatars.githubusercontent.com/u/12620672?v=4",
+        "description": "The Dark Sage semi-analytic model",
         "topics": []
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-        "uid": "github/sibyllema/Fast-Multiscale-Diffusion-on-Graphs",
-        "url": "https://github.com/sibyllema/Fast-Multiscale-Diffusion-on-Graphs",
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-        "description": "Standalone code to generate the figures for the paper \"Fast Multiscale Diffusion on Graphs\" accepted at ICASSP 2022.",
+        "uid": "github/Clinical-Genomics-Umea/fraggler",
+        "url": "https://github.com/Clinical-Genomics-Umea/fraggler",
+        "rel": "/software/repository/github/Clinical-Genomics-Umea/fraggler",
+        "avatar": "https://avatars.githubusercontent.com/u/98591011?v=4",
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-        "uid": "github/jonzink/EDI-Vetter",
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-        "description": "The (Exoplanet Detection Identifier) EDI-Vetter is the rock'n roll love child of Terra and RoboVetter, optimized to vet K2 transit signals.",
+        "uid": "github/pkestene/ramsesGPU",
+        "url": "https://github.com/pkestene/ramsesGPU",
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+        "avatar": "https://avatars.githubusercontent.com/u/8276295?v=4",
+        "description": "Astrophysics MHD simulation code optimized for large cluster of GPU",
         "topics": [
-            "exoplanets",
-            "transits",
-            "k2-data-science",
-            "python"
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+            "gpu",
+            "gpu-acceleration",
+            "gpgpu",
+            "mhd",
+            "cfd",
+            "hydrodynamics",
+            "finite-volume",
+            "parallel-computing",
+            "hpc",
+            "astrophysics",
+            "kelvin-helmholtz-instability",
+            "hdf5",
+            "pnetcdf",
+            "turbulence",
+            "shearing-box",
+            "muscl-hancock",
+            "conservation-law",
+            "euler-equations",
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-        "uid": "github/jonzink/EDI_Vetter_unplugged",
-        "url": "https://github.com/jonzink/EDI_Vetter_unplugged",
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-        "description": "A compact version of EDI-Vetter, which uses the TLS output to quickly vet transit signals. All your favorite hits in a simplified format.",
+        "uid": "github/pkestene/xsmurf",
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+        "rel": "/software/repository/github/pkestene/xsmurf",
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+        "description": "a wavelet-based multifractal image analysis tool implementing the WTMM (Wavelet Transform Modulus Maxima) method.",
         "topics": [
-            "vetting-metrics",
-            "python",
-            "tls",
-            "telescope",
-            "edi-vetter-unplugged",
-            "exoplanets",
-            "transit-data"
+            "multifractal-analysis",
+            "tcl",
+            "wavelet",
+            "modulus-maxima",
+            "tk",
+            "continuous-wavelet",
+            "fractal",
+            "multifractal",
+            "wtmm",
+            "singularity-spectrum",
+            "monofractal",
+            "turbulence",
+            "holder-exponent"
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-        "uid": "github/jacob-long/jtools",
-        "url": "https://github.com/jacob-long/jtools",
-        "rel": "/software/repository/github/jacob-long/jtools",
-        "avatar": "https://avatars.githubusercontent.com/u/4957401?v=4",
-        "description": "Tools for summarizing/visualizing regressions and other helpful stuff",
+        "uid": "github/seamplex/feenox",
+        "url": "https://github.com/seamplex/feenox",
+        "rel": "/software/repository/github/seamplex/feenox",
+        "avatar": "https://avatars.githubusercontent.com/u/47778967?v=4",
+        "description": "Cloud-first free no-fee no-X uniX-like finite-element(ish) computational engineering tool",
         "topics": [
-            "r",
-            "social-sciences",
-            "r-package"
+            "finite-elements",
+            "hpc",
+            "numerical-methods",
+            "ode-solver",
+            "pde-solver"
         ]
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-        "uid": "github/zd1/telseq",
-        "url": "https://github.com/zd1/telseq",
-        "rel": "/software/repository/github/zd1/telseq",
-        "avatar": "https://avatars.githubusercontent.com/u/814295?v=4",
-        "description": "A software for calculating telomere length",
+        "uid": "github/astro-informatics/massmappy",
+        "url": "https://github.com/astro-informatics/massmappy",
+        "rel": "/software/repository/github/astro-informatics/massmappy",
+        "avatar": "https://avatars.githubusercontent.com/u/10872187?v=4",
+        "description": "Mapping dark matter on the celestial sphere",
         "topics": []
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     {
-        "uid": "github/EliabCanul/nauyaca",
-        "url": "https://github.com/EliabCanul/nauyaca",
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-        "avatar": "https://avatars.githubusercontent.com/u/43527963?v=4",
-        "description": "Nauyaca is a tool to determine planetary masses and orbital elements through the fitting of observed mid-transit times, from a N-body approach.",
+        "uid": "github/astro-informatics/harmonic",
+        "url": "https://github.com/astro-informatics/harmonic",
+        "rel": "/software/repository/github/astro-informatics/harmonic",
+        "avatar": "https://avatars.githubusercontent.com/u/10872187?v=4",
+        "description": "Machine learning assisted marginal likelihood (Bayesian evidence) estimation for Bayesian model selection",
         "topics": [
-            "jupyter-notebook",
-            "python"
+            "bayesian-inference",
+            "machine-learning",
+            "statistics-toolbox",
+            "code"
         ]
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-        "uid": "github/GeneDx/scramble",
-        "url": "https://github.com/GeneDx/scramble",
-        "rel": "/software/repository/github/GeneDx/scramble",
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-        "description": "runs as a two-step process. First cluster_identifier is used to generate soft-clipped read cluster consensus sequences. Second, SCRAMBle-MEIs.R analyzes the cluster file for likely Mobile Element Insertions.",
+        "uid": "github/astro-informatics/ssht",
+        "url": "https://github.com/astro-informatics/ssht",
+        "rel": "/software/repository/github/astro-informatics/ssht",
+        "avatar": "https://avatars.githubusercontent.com/u/10872187?v=4",
+        "description": "Fast and exact spin spherical harmonic transforms",
         "topics": []
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-        "uid": "github/manodeep/Corrfunc",
-        "url": "https://github.com/manodeep/Corrfunc",
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-        "description": "\u26a1\ufe0f\u26a1\ufe0f\u26a1\ufe0fBlazing fast correlation functions on the CPU.",
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-            "pair-counting",
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-            "c",
-            "openmp",
-            "simd",
-            "avx512",
-            "avx2",
-            "avx",
-            "sse42",
-            "correlation-functions"
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+        "uid": "github/astro-informatics/RequiSim",
+        "url": "https://github.com/astro-informatics/RequiSim",
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-        "uid": "github/manodeep/TesseRACt",
-        "url": "https://github.com/manodeep/TesseRACt",
-        "rel": "/software/repository/github/manodeep/TesseRACt",
-        "avatar": "https://avatars.githubusercontent.com/u/3004941?v=4",
-        "description": null,
+        "uid": "github/astro-informatics/s2",
+        "url": "https://github.com/astro-informatics/s2",
+        "rel": "/software/repository/github/astro-informatics/s2",
+        "avatar": "https://avatars.githubusercontent.com/u/10872187?v=4",
+        "description": "Functions on the sphere",
         "topics": []
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-        "uid": "github/singularityhub/singularity-hpc",
-        "url": "https://github.com/singularityhub/singularity-hpc",
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-        "description": "Local filesystem registry for containers (intended for HPC) using Lmod or Environement Modules. Works for users and admins.",
+        "uid": "github/astro-informatics/stringgen",
+        "url": "https://github.com/astro-informatics/stringgen",
+        "rel": "/software/repository/github/astro-informatics/stringgen",
+        "avatar": "https://avatars.githubusercontent.com/u/10872187?v=4",
+        "description": "Scattering based cosmic string emulation",
         "topics": [
-            "singularity",
-            "hpc",
-            "lmod",
-            "containers",
-            "reproducibility"
+            "cosmic-strings",
+            "cosmology",
+            "emulation",
+            "scattering-transform",
+            "statistics",
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-        "uid": "github/singularityhub/sregistry",
-        "url": "https://github.com/singularityhub/sregistry",
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-        "description": "server for storage and management of singularity images",
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+        "rel": "/software/repository/github/astro-informatics/sleplet",
+        "avatar": "https://avatars.githubusercontent.com/u/10872187?v=4",
+        "description": "Slepian Scale-Discretised Wavelets",
         "topics": [
-            "singularityhub",
-            "singularity",
-            "singularity-containers",
-            "containers",
-            "management",
-            "registry"
+            "manifolds",
+            "python",
+            "slepian-functions",
+            "sphere",
+            "wavelets"
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-        "description": "orchestration for singularity containers (under development)",
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+        "avatar": "https://avatars.githubusercontent.com/u/10872187?v=4",
+        "description": "Differentiable and accelerated spherical transforms with JAX",
         "topics": [
-            "singularity-compose",
-            "container-orchestration",
-            "singularity"
+            "differentiable-programming",
+            "jax",
+            "spherical-harmonics",
+            "wigner-d-matrix",
+            "wigner-transform",
+            "fourier-transform",
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-        "description": "An Oxford Nanopore Basecaller",
+        "uid": "github/astro-informatics/flaglet-archive",
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+        "description": "Fast and exact wavelet transform on the ball",
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-        "url": "https://github.com/mateidavid/fast5",
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-        "description": "A C++ header-only library for reading Oxford Nanopore Fast5 files",
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+        "url": "https://github.com/astro-informatics/flag-archive",
+        "rel": "/software/repository/github/astro-informatics/flag-archive",
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+        "description": "Fast Fourier-Laguerre transform on the ball and exact spherical Bessel and Fourier-Bessel transforms",
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-        "uid": "github/timchurches/NetEpi-Analysis",
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-        "avatar": "https://avatars.githubusercontent.com/u/2859105?v=4",
-        "description": "Web-based object-oriented data exploration and analysis system",
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+        "url": "https://github.com/astro-informatics/QuantifAI",
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+        "description": "PyTorch-based RI imaging reconstruction package with scalable Bayesian uncertainty quantification relying on data-driven (learned) priors",
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+            "radio-interferometry",
+            "uncertainty-quantification",
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-        "uid": "github/timchurches/NetEpi-Collection",
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-        "avatar": "https://avatars.githubusercontent.com/u/2859105?v=4",
-        "description": "Communicable disease and epidemiological data collection and management system",
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+        "description": "Compact object simulations on the sphere",
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+        "description": "Fast wavelet transforms on the sphere.",
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-        "uid": "github/sonoUnoTeam/sonoUno-desktop",
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-        "avatar": "https://avatars.githubusercontent.com/u/51083952?v=4",
-        "description": "SonoUno is a sonification software for astronomical data presented on a table (txt or csv files). The software is being developed based on the study of other software, standards of accessibility like the ISO 9241-171:2008 (Guidance on software accessibility) and theoretical framework based on literature review and end user tests.",
+        "uid": "github/astro-informatics/DarkMappy",
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+        "avatar": "https://avatars.githubusercontent.com/u/10872187?v=4",
+        "description": "Scalable mapping of the dark universe",
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+            "bayesian",
+            "inverse-problems",
+            "signal-processing",
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+        "description": "Implementation of the 2-population model for dust evolution in protoplanetary disks after Birnstiel, Klahr, & Ercolano, A&A 2012",
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-        "description": "Calculate CDC/ATSDR Social Vulnerability Index",
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-        "description": "Create behavioral experiments in a browser using JavaScript",
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-        "description": "Tools for fitting (image plane fringes), calibrating, and analyzing NRM data across multiple instruments and modes",
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+        "rel": "/software/repository/github/lime-rt/lime",
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+        "description": "Line Modeling Engine",
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-        "url": "https://github.com/lengoctram/DustPOL-py",
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+        "description": "SIMIO: from SIMulatIons to Observations",
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-        "avatar": "https://avatars.githubusercontent.com/u/130992956?v=4",
-        "description": "A simulation engine for models related to plants",
+        "uid": "github/RenneLab/hybkit",
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+        "description": "Toolkit for analysis of \".hyb\" format nucleotide sequence data from chimeric RNA experiments.",
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-            "julia",
-            "julialang",
-            "modeling",
-            "plants",
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+            "bioinformatics-tool",
+            "bioinformatics-pipeline",
+            "ribonomics",
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-        "description": "CNTSeg: A multimodal deep-learning-based network for cranial nerves tract segmentation",
-        "topics": []
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+        "url": "https://github.com/metagenopolis/CroCoDeEL",
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+        "avatar": "https://avatars.githubusercontent.com/u/150909814?v=4",
+        "description": "CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data",
+        "topics": [
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+            "metagenomics",
+            "quality-control"
+        ]
     },
     {
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-        "description": "Datasets, Transforms and Models specific to Computer Vision",
-        "topics": [
-            "computer-vision",
-            "machine-learning"
-        ]
+        "uid": "github/roban/CosmoloPy",
+        "url": "https://github.com/roban/CosmoloPy",
+        "rel": "/software/repository/github/roban/CosmoloPy",
+        "avatar": "https://avatars.githubusercontent.com/u/113354?v=4",
+        "description": "a basic numpy/scipy-based cosmology package for python",
+        "topics": []
     },
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-        "uid": "github/renecotyfanboy/jaxspec",
-        "url": "https://github.com/renecotyfanboy/jaxspec",
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-        "avatar": "https://avatars.githubusercontent.com/u/49200287?v=4",
-        "description": "jaxspec is an X-ray spectra Bayesian analysis package, relying on JAX to enable just in time compilation",
+        "uid": "github/iopenshell/ezSpectrum",
+        "url": "https://github.com/iopenshell/ezSpectrum",
+        "rel": "/software/repository/github/iopenshell/ezSpectrum",
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-        "uid": "github/bodenlab/GRASP",
-        "url": "https://github.com/bodenlab/GRASP",
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-        "avatar": "https://avatars.githubusercontent.com/u/13028136?v=4",
-        "description": "Graphical Representation of Ancestral Sequence Predictions",
+        "uid": "github/sterinaldi/FIGARO",
+        "url": "https://github.com/sterinaldi/FIGARO",
+        "rel": "/software/repository/github/sterinaldi/FIGARO",
+        "avatar": "https://avatars.githubusercontent.com/u/56389680?v=4",
+        "description": "Fast Inference for GW Astronomy, Research and Observations",
         "topics": []
     },
     {
-        "uid": "github/RussellJurek/busy-function-fitting",
-        "url": "https://github.com/RussellJurek/busy-function-fitting",
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-        "description": "A C/C++ library and Python module that allows users to fit the Busy Function (Westmeier, Jurek, Obreschkow, Koribalski & Staveley-Smith 2013) to data. Previously available at code.google.com/p/busy-function-fitting",
+        "uid": "github/carlosandrepaes/GaPP",
+        "url": "https://github.com/carlosandrepaes/GaPP",
+        "rel": "/software/repository/github/carlosandrepaes/GaPP",
+        "avatar": "https://avatars.githubusercontent.com/u/9978975?v=4",
+        "description": "Gaussian Processes GaPP code auxiliary repository  ",
         "topics": []
     },
     {
-        "uid": "github/murphycj/AGFusion",
-        "url": "https://github.com/murphycj/AGFusion",
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-        "avatar": "https://avatars.githubusercontent.com/u/3837196?v=4",
-        "description": "Python package to annotate and visualize gene fusions.",
+        "uid": "github/tesselle/aion",
+        "url": "https://github.com/tesselle/aion",
+        "rel": "/software/repository/github/tesselle/aion",
+        "avatar": "https://avatars.githubusercontent.com/u/78033555?v=4",
+        "description": ":stopwatch: Archaeological Time Series",
         "topics": [
-            "gene-fusion",
-            "protein",
-            "fusion",
-            "rna-seq",
-            "python",
-            "cancer",
-            "cancer-genomics",
-            "chimera",
-            "bioinformatics",
-            "structural-variation"
+            "archaeological-science",
+            "archaeology",
+            "r-package",
+            "chronology",
+            "time-series"
         ]
     },
     {
-        "uid": "github/pyvisa/pyvisa",
-        "url": "https://github.com/pyvisa/pyvisa",
-        "rel": "/software/repository/github/pyvisa/pyvisa",
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-        "description": "A Python package with bindings to the \"Virtual Instrument Software Architecture\" VISA library, in order to control measurement devices and test equipment via GPIB, RS232, or USB.",
+        "uid": "github/jeetsukumaran/DendroPy",
+        "url": "https://github.com/jeetsukumaran/DendroPy",
+        "rel": "/software/repository/github/jeetsukumaran/DendroPy",
+        "avatar": "https://avatars.githubusercontent.com/u/26183?v=4",
+        "description": "A Python library for phylogenetic scripting, simulation, data processing and manipulation.",
         "topics": []
     },
     {
-        "uid": "github/kbarbary/nestle",
-        "url": "https://github.com/kbarbary/nestle",
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-        "description": "Pure Python, MIT-licensed implementation of nested sampling algorithms for evaluating Bayesian evidence.",
-        "topics": [
-            "python",
-            "nested-sampling",
-            "bayesian-inference"
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-        "avatar": "https://avatars.githubusercontent.com/u/970135?v=4",
-        "description": "Python and C library for source extraction and photometry",
+        "uid": "github/CTU-Bern/presize",
+        "url": "https://github.com/CTU-Bern/presize",
+        "rel": "/software/repository/github/CTU-Bern/presize",
+        "avatar": "https://avatars.githubusercontent.com/u/45794307?v=4",
+        "description": "Precision Based Sample Size Calculation",
         "topics": []
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     {
-        "uid": "github/kbarbary/extinction",
-        "url": "https://github.com/kbarbary/extinction",
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-        "avatar": "https://avatars.githubusercontent.com/u/970135?v=4",
-        "description": "Fast interstellar dust extinction laws in Python",
-        "topics": [
-            "extinction",
-            "python"
-        ]
+        "uid": "github/CisnerosResearch/LICHEM",
+        "url": "https://github.com/CisnerosResearch/LICHEM",
+        "rel": "/software/repository/github/CisnerosResearch/LICHEM",
+        "avatar": "https://avatars.githubusercontent.com/u/43679387?v=4",
+        "description": "This package is an open-source (GPLv3) interface between QM and MM software so that QM/MM calculations can be performed with polarizable and frozen electron density force fields. Functionality is also present for standard point-charge based force fields, pure MM, and pure QM calculations.",
+        "topics": []
     },
     {
-        "uid": "github/phac-nml/mob-suite",
-        "url": "https://github.com/phac-nml/mob-suite",
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-        "avatar": "https://avatars.githubusercontent.com/u/15620262?v=4",
-        "description": "MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies",
+        "uid": "github/lomereiter/sambamba",
+        "url": "https://github.com/biod/sambamba",
+        "rel": "/software/repository/github/lomereiter/sambamba",
+        "avatar": "https://avatars.githubusercontent.com/u/3667078?v=4",
+        "description": "Tools for working with SAM/BAM data",
         "topics": [
-            "plasmids",
-            "typing",
-            "clustering",
-            "assemblies"
+            "sam",
+            "bam",
+            "bioinformatics"
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-        "uid": "github/phac-nml/biohansel",
-        "url": "https://github.com/phac-nml/biohansel",
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-        "description": "subtype microbial whole-genome sequencing (WGS) data using SNV targeting k-mer subtyping schemes.",
-        "topics": []
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-        "avatar": "https://avatars.githubusercontent.com/u/15620262?v=4",
-        "description": "Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.",
+        "uid": "github/JLiangLab/TransVW",
+        "url": "https://github.com/fhaghighi/TransVW",
+        "rel": "/software/repository/github/JLiangLab/TransVW",
+        "avatar": "https://avatars.githubusercontent.com/u/31901902?v=4",
+        "description": "Official Keras & PyTorch Implementation and Pre-trained Models for TransVW",
         "topics": [
-            "antimicrobial-resistance",
-            "genomics",
-            "bioinformatics"
+            "self-supervised-learning",
+            "transfer-learning",
+            "3d-models",
+            "medical-imaging",
+            "fine-tuning"
         ]
     },
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-        "uid": "github/mgcooper/baseflow",
-        "url": "https://github.com/mgcooper/baseflow",
-        "rel": "/software/repository/github/mgcooper/baseflow",
-        "avatar": "https://avatars.githubusercontent.com/u/9771768?v=4",
-        "description": "baseflow recession analysis toolbox",
+        "uid": "github/xzackli/WignerFamilies.jl",
+        "url": "https://github.com/xzackli/WignerFamilies.jl",
+        "rel": "/software/repository/github/xzackli/WignerFamilies.jl",
+        "avatar": "https://avatars.githubusercontent.com/u/8048811?v=4",
+        "description": "compute families of wigner symbols with recurrence relations",
         "topics": [
-            "baseflow",
-            "groundwater",
-            "hydrology"
+            "wigner-symbols",
+            "wigner-3j",
+            "julia",
+            "quantum",
+            "cosmology"
         ]
     },
     {
-        "uid": "github/matplotlib/matplotlib",
-        "url": "https://github.com/matplotlib/matplotlib",
-        "rel": "/software/repository/github/matplotlib/matplotlib",
-        "avatar": "https://avatars0.githubusercontent.com/u/215947?v=4",
-        "description": "matplotlib: plotting with Python",
+        "uid": "github/ofionnad/radiowinds",
+        "url": "https://github.com/ofionnad/radiowinds",
+        "rel": "/software/repository/github/ofionnad/radiowinds",
+        "avatar": "https://avatars.githubusercontent.com/u/20027636?v=4",
+        "description": "Calculate the thermal bremsstrahlung emission from stellar winds",
         "topics": []
     },
     {
-        "uid": "github/miche-levi/pncbc-eftofpng",
-        "url": "https://github.com/miche-levi/pncbc-eftofpng",
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-        "avatar": "https://avatars.githubusercontent.com/u/28704109?v=4",
-        "description": null,
+        "uid": "github/sjbeckett/localcovid19now",
+        "url": "https://github.com/sjbeckett/localcovid19now",
+        "rel": "/software/repository/github/sjbeckett/localcovid19now",
+        "avatar": "https://avatars.githubusercontent.com/u/4902758?v=4",
+        "description": "processing and mapping COVID-19 case data at subnational scales",
         "topics": []
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-        "uid": "github/ACEnglish/truvari",
-        "url": "https://github.com/ACEnglish/truvari",
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-        "description": "Structural variant toolkit for VCFs",
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-            "vcf",
-            "bioinformatics",
-            "data-science",
-            "genomics",
-            "vcf-comparison",
-            "annotation-tool",
-            "benchmark-scripts",
-            "sequencing-data",
-            "sv-merging"
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+        "uid": "github/debian-tex/biber",
+        "url": "https://github.com/debian-tex/biber",
+        "rel": "/software/repository/github/debian-tex/biber",
+        "avatar": "https://avatars.githubusercontent.com/u/46477164?v=4",
+        "description": "Much-augmented BibTeX replacement for BibLaTeX users",
+        "topics": []
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-        "url": "https://github.com/ydLiu-HIT/deSALT",
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-        "description": "deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads",
+        "uid": "github/debian-tex/texlive-nonbin",
+        "url": "https://github.com/debian-tex/texlive-nonbin",
+        "rel": "/software/repository/github/debian-tex/texlive-nonbin",
+        "avatar": "https://avatars.githubusercontent.com/u/46477164?v=4",
+        "description": "debian non-bin texlive pkgs",
         "topics": []
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     {
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-        "url": "https://github.com/maize-genetics/rTASSEL",
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-        "avatar": "https://avatars.githubusercontent.com/u/53280986?v=4",
-        "description": "R front-end for TASSEL",
+        "uid": "github/jakeret/abcpmc",
+        "url": "https://github.com/jakeret/abcpmc",
+        "rel": "/software/repository/github/jakeret/abcpmc",
+        "avatar": "https://avatars.githubusercontent.com/u/11830719?v=4",
+        "description": "Approximate Bayesian Computation Population Monte Carlo",
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-        "url": "https://github.com/HCGB-IGTP/XICRA",
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-        "avatar": "https://avatars.githubusercontent.com/u/56880433?v=4",
-        "description": "Small RNAseq pipeline for paired-end reads",
+        "uid": "github/jakeret/tf_unet",
+        "url": "https://github.com/jakeret/tf_unet",
+        "rel": "/software/repository/github/jakeret/tf_unet",
+        "avatar": "https://avatars.githubusercontent.com/u/11830719?v=4",
+        "description": "Generic U-Net Tensorflow implementation for image segmentation",
         "topics": [
-            "pipeline",
-            "mirna",
-            "smallrna-seq",
-            "python"
+            "image-segmentation",
+            "neural-network",
+            "deep-learning",
+            "tensorflow"
         ]
     },
     {
-        "uid": "github/HCGB-IGTP/spaTyper",
-        "url": "https://github.com/HCGB-IGTP/spaTyper",
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-        "description": "Computational method for finding spa types.",
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-        "avatar": "https://avatars.githubusercontent.com/u/56009989?v=4",
-        "description": "small n sequential multiple assignment randomized trial (snSMART)",
+        "uid": "github/Martinsos/edlib",
+        "url": "https://github.com/Martinsos/edlib",
+        "rel": "/software/repository/github/Martinsos/edlib",
+        "avatar": "https://avatars.githubusercontent.com/u/1536647?v=4",
+        "description": "Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.",
         "topics": [
-            "bayesian-analysis",
-            "clinical-trials",
-            "r",
-            "rare-disease",
-            "small-sample"
+            "sequence-alignment",
+            "edit-distance",
+            "levehnstein-distance",
+            "library",
+            "c-plus-plus",
+            "alignment-path",
+            "python",
+            "bioinformatics"
         ]
     },
     {
-        "uid": "github/yiwenstat/MCPCA_PopGen",
-        "url": "https://github.com/yiwenstat/MCPCA_PopGen",
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+        "uid": "github/glasgowlab/MAGPIE",
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+        "avatar": "https://avatars.githubusercontent.com/u/98300418?v=4",
+        "description": "MAGPIE",
+        "topics": [
+            "interactive-visualizations",
+            "protein-protein-interaction",
+            "sequence-logo",
+            "protein-ligand-interaction"
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-        "uid": "github/tcherninceline/PPInteractions",
-        "url": "https://github.com/tcherninceline/PPInteractions",
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+        "uid": "github/kuanrongchan/COVID19-severity",
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         "topics": [
-            "dbms",
-            "benchmarking",
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         "topics": []
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-        "description": "Linear optimization with N-D labeled arrays in Python",
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-            "xarray",
-            "cbc",
-            "gurobi",
-            "cplex",
-            "glpk",
-            "xpress",
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-        "uid": "github/PyPSA/atlite",
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-        "description": "Atlite: Light-weight version of Aarhus RE Atlas for converting weather data to power systems data",
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         "topics": []
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-        "uid": "github/PopGenClustering/Clumppling",
-        "url": "https://github.com/PopGenClustering/Clumppling",
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-        "avatar": "https://avatars.githubusercontent.com/u/113391343?v=4",
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-        "description": "MetaPred: Meta-Learning for Clinical Risk Prediction with Limited Patient Electronic Health Records (KDD 2019)",
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+        "description": "Open-source python package for multicomponent multiphase equilibrium CALPHAD calculations",
         "topics": [
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-        "uid": "github/MJCliffe/PASCal",
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-        "description": "A computational framework for tetrad-based genotyping & recombination landscape analysis",
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         "topics": [
-            "tetrad",
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+        "description": "Lightning SED Fitting Package",
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-        "description": "pkgdown template for rOpenSci packages :nail_care: :sparkles:",
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+        "url": "https://github.com/BiomedSciAI/fuse-med-ml",
+        "rel": "/software/repository/github/BiomedSciAI/fuse-med-ml",
+        "avatar": "https://avatars.githubusercontent.com/u/108874137?v=4",
+        "description": "A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)",
         "topics": [
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-        "description": "Exoplanet transit simulator.",
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+            "gis",
+            "remote-sensing",
+            "image-processing",
+            "terrain-analysis",
+            "hydrological"
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     },
     {
-        "uid": "github/gmzsebastian/FLEET",
-        "url": "https://github.com/gmzsebastian/FLEET",
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-        "avatar": "https://avatars.githubusercontent.com/u/10391602?v=4",
-        "description": "Finding Luminous and Exotic Extragalactic Transients",
-        "topics": []
+        "uid": "github/giswqs/geemap",
+        "url": "https://github.com/giswqs/geemap",
+        "rel": "/software/repository/github/giswqs/geemap",
+        "avatar": "https://avatars1.githubusercontent.com/u/5016453?v=4",
+        "description": "A Python package for interactive mapping with Google Earth Engine, ipyleaflet, and ipywidgets",
+        "topics": [
+            "google-earth-engine",
+            "gis",
+            "remote-sensing",
+            "image-processing",
+            "python",
+            "jupyter-notebook",
+            "ipyleaflet",
+            "mapping",
+            "earth-engine"
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     },
     {
-        "uid": "github/ihmwg/python-modelcif",
-        "url": "https://github.com/ihmwg/python-modelcif",
-        "rel": "/software/repository/github/ihmwg/python-modelcif",
-        "avatar": "https://avatars.githubusercontent.com/u/19265055?v=4",
-        "description": " Python package for handling ModelCIF mmCIF and BinaryCIF files ",
+        "uid": "github/jeffcsauer/arcos_arcospy_information",
+        "url": "https://github.com/jeffcsauer/arcos_arcospy_information",
+        "rel": "/software/repository/github/jeffcsauer/arcos_arcospy_information",
+        "avatar": "https://avatars2.githubusercontent.com/u/31426294?v=4",
+        "description": "This is an informational landing page for the R arcos and Python arcospy software",
         "topics": []
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-        "avatar": "https://avatars.githubusercontent.com/u/137177858?v=4",
-        "description": "Multimodal contrastive pretraining for astronomical data",
+        "uid": "github/fusk-kpu/StressResponseGenesAtlas",
+        "url": "https://github.com/fusk-kpu/StressResponseGenesAtlas",
+        "rel": "/software/repository/github/fusk-kpu/StressResponseGenesAtlas",
+        "avatar": "https://avatars.githubusercontent.com/u/125861730?v=4",
+        "description": null,
         "topics": []
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-        "uid": "github/cosmo-ethz/seek",
-        "url": "https://github.com/cosmo-ethz/seek",
-        "rel": "/software/repository/github/cosmo-ethz/seek",
-        "avatar": "https://avatars.githubusercontent.com/u/8969967?v=4",
-        "description": "A flexible and easy-to-extend data processing pipeline for single dish radio telescopes",
+        "uid": "github/1054/Crab.Toolkit.michi2",
+        "url": "https://github.com/1054/Crab.Toolkit.michi2",
+        "rel": "/software/repository/github/1054/Crab.Toolkit.michi2",
+        "avatar": "https://avatars.githubusercontent.com/u/6521499?v=4",
+        "description": "crab minimum chi2 toolkit",
         "topics": []
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     {
-        "uid": "github/cosmo-ethz/CosmoHammer",
-        "url": "https://github.com/cosmo-ethz/CosmoHammer",
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+        "uid": "github/vbaliga/gaussplotR",
+        "url": "https://github.com/vbaliga/gaussplotR",
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+        "avatar": "https://avatars.githubusercontent.com/u/9795391?v=4",
+        "description": "\ud83d\udd14 Fit, predict, and plot 2D Gaussians in R",
         "topics": [
-            "cosmology",
-            "outdated",
-            "eth-zurich",
-            "markov-chains"
+            "gaussian",
+            "r",
+            "rstats",
+            "gaussian-interpolation",
+            "gaussian-plot",
+            "plotting",
+            "gaussian-volume",
+            "2d-gaussian",
+            "gaussian-fit"
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     },
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-        "uid": "github/cosmo-ethz/hide",
-        "url": "https://github.com/cosmo-ethz/hide",
-        "rel": "/software/repository/github/cosmo-ethz/hide",
-        "avatar": "https://avatars.githubusercontent.com/u/8969967?v=4",
-        "description": "A package for simulating of a single dish radio telescope survey",
+        "uid": "github/LeonSong1995/gsMap",
+        "url": "https://github.com/LeonSong1995/gsMap",
+        "rel": "/software/repository/github/LeonSong1995/gsMap",
+        "avatar": "https://avatars.githubusercontent.com/u/49676857?v=4",
+        "description": "gsMap (genetically informed spatial mapping of cells for complex traits) integrates spatial transcriptomics (ST) data with genome-wide association study (GWAS) summary statistics to map cells to human complex traits, including diseases, in a spatially resolved manner.",
         "topics": []
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     {
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-        "description": "Amplicon sequence processing workflow using QIIME 2 and Snakemake",
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-            "amplicon-sequence-variants",
-            "dada2",
-            "deblur",
-            "snakemake"
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+        "uid": "github/szpiech/selscan",
+        "url": "https://github.com/szpiech/selscan",
+        "rel": "/software/repository/github/szpiech/selscan",
+        "avatar": "https://avatars.githubusercontent.com/u/4237506?v=4",
+        "description": "Haplotype based scans for selection",
+        "topics": []
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     {
-        "uid": "github/cmoestl/3DCORE",
-        "url": "https://github.com/cmoestl/3DCORE",
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-        "avatar": "https://avatars.githubusercontent.com/u/14162616?v=4",
-        "description": "3D coronal mass ejection flux rope modeling",
+        "uid": "github/SMTG-Bham/doped",
+        "url": "https://github.com/SMTG-Bham/doped",
+        "rel": "/software/repository/github/SMTG-Bham/doped",
+        "avatar": "https://avatars.githubusercontent.com/u/14860406?v=4",
+        "description": "doped is a Python software for the generation, pre-/post-processing and analysis of defect supercell calculations, implementing the defect simulation workflow in an efficient, reproducible, user-friendly yet powerful and fully-customisable manner.",
         "topics": [
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-            "spaceweather",
-            "spacephysics",
-            "solarwind"
+            "ab-initio",
+            "computational-chemistry",
+            "computational-materials-science",
+            "defect-formation-energy",
+            "defects",
+            "dft",
+            "doping",
+            "fermi-level",
+            "point-defects",
+            "pymatgen",
+            "semiconductors",
+            "vasp",
+            "defect-calculation",
+            "defect-levels",
+            "defect-thermodynamics",
+            "shakenbreak",
+            "transition-levels"
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     },
     {
-        "uid": "github/YonghuiDong/RawHummus",
-        "url": "https://github.com/YonghuiDong/RawHummus",
-        "rel": "/software/repository/github/YonghuiDong/RawHummus",
-        "avatar": "https://avatars.githubusercontent.com/u/22663189?v=4",
-        "description": "QC Check Tool for Metabolomics",
+        "uid": "github/SMTG-Bham/ThermoParser",
+        "url": "https://github.com/SMTG-Bham/ThermoParser",
+        "rel": "/software/repository/github/SMTG-Bham/ThermoParser",
+        "avatar": "https://avatars.githubusercontent.com/u/14860406?v=4",
+        "description": "A tool for streamlining data analysis and visualisation for thermoelectrics and charge carrier transport in computational materials science.",
         "topics": [
-            "metabolomics",
-            "lcms",
-            "orbitrap",
-            "quality-control"
+            "thermoelectric",
+            "chemistry",
+            "physics",
+            "materials",
+            "science",
+            "materials-science",
+            "plotting",
+            "tp",
+            "matplotlib",
+            "python",
+            "computational-chemistry",
+            "computational-materials-science"
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     },
     {
-        "uid": "github/aalhossary/pyemgpipeline",
-        "url": "https://github.com/aalhossary/pyemgpipeline",
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-        "description": null,
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+        "rel": "/software/repository/github/jfwallin/JSPAM",
+        "avatar": "https://avatars.githubusercontent.com/u/1709158?v=4",
+        "description": "Software for simulating interacting galaxies using a restricted three-body approximation",
         "topics": []
     },
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-        "uid": "github/QuaCaTeam/quaca",
-        "url": "https://github.com/QuaCaTeam/quaca",
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-        "avatar": "https://avatars.githubusercontent.com/u/65653300?v=4",
-        "description": "QuaCa is an open-source library which provides fast calculations of nonequilibrium atom-surface interactions.",
+        "uid": "github/cbrnr/sigviewer",
+        "url": "https://github.com/cbrnr/sigviewer",
+        "rel": "/software/repository/github/cbrnr/sigviewer",
+        "avatar": "https://avatars.githubusercontent.com/u/4377312?v=4",
+        "description": "SigViewer is a viewing application for biosignals.",
         "topics": [
-            "physics",
-            "fluctuations",
-            "integration",
-            "casimir",
-            "quantum"
+            "eeg",
+            "visualization"
         ]
     },
     {
-        "uid": "github/tjiangHIT/cuteSV",
-        "url": "https://github.com/tjiangHIT/cuteSV",
-        "rel": "/software/repository/github/tjiangHIT/cuteSV",
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-        "topics": [
-            "structural-variation",
-            "pacbio-data",
-            "oxford-nanopore"
-        ]
+        "uid": "github/cytham/nanovar",
+        "url": "https://github.com/cytham/nanovar",
+        "rel": "/software/repository/github/cytham/nanovar",
+        "avatar": "https://avatars.githubusercontent.com/u/25361260?v=4",
+        "description": "Structural variant caller for low-depth long-read sequencing data",
+        "topics": []
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-        "uid": "github/ketch/RK-Opt",
-        "url": "https://github.com/ketch/RK-Opt",
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-        "avatar": "https://avatars1.githubusercontent.com/u/697763?v=4",
-        "description": "A package for the design of numerical ODE solvers",
+        "uid": "github/netsiphd/netrd",
+        "url": "https://github.com/netsiphd/netrd",
+        "rel": "/software/repository/github/netsiphd/netrd",
+        "avatar": "https://avatars.githubusercontent.com/u/46543375?v=4",
+        "description": "A library for network {reconstruction, distances, dynamics}",
         "topics": []
     },
     {
-        "uid": "github/ketch/nodepy",
-        "url": "https://github.com/ketch/nodepy",
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-        "avatar": "https://avatars1.githubusercontent.com/u/697763?v=4",
-        "description": "Analysis of initial value ODE solvers",
+        "uid": "github/glass-dev/glass",
+        "url": "https://github.com/glass-dev/glass",
+        "rel": "/software/repository/github/glass-dev/glass",
+        "avatar": "https://avatars.githubusercontent.com/u/88461024?v=4",
+        "description": "Generator for Large Scale Structure",
         "topics": []
     },
     {
-        "uid": "github/sbird/GenPK",
-        "url": "https://github.com/sbird/GenPK",
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-        "description": "Program for finding the matter power spectrum from Gadget format files. Uses FFTW3 and GadgetReader.",
-        "topics": []
+        "uid": "github/icb-dcm/pyabc",
+        "url": "https://github.com/ICB-DCM/pyABC",
+        "rel": "/software/repository/github/icb-dcm/pyabc",
+        "avatar": "https://avatars.githubusercontent.com/u/17879961?v=4",
+        "description": "distributed, likelihood-free inference",
+        "topics": [
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+            "approximate-bayesian-inference",
+            "likelihood-free-inference",
+            "parameter-inference"
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     },
     {
-        "uid": "github/sbird/fake_spectra",
-        "url": "https://github.com/sbird/fake_spectra",
-        "rel": "/software/repository/github/sbird/fake_spectra",
-        "avatar": "https://avatars.githubusercontent.com/u/1325948?v=4",
-        "description": "A code for generating fake spectra from a cosmological simulation",
+        "uid": "github/demorest/nanopipe",
+        "url": "https://github.com/demorest/nanopipe",
+        "rel": "/software/repository/github/demorest/nanopipe",
+        "avatar": "https://avatars.githubusercontent.com/u/159985?v=4",
+        "description": "Calibration and TOA generation scripts for NANOGrav data",
         "topics": []
     },
     {
-        "uid": "github/reggiebernardo/PTAfast",
-        "url": "https://github.com/reggiebernardo/PTAfast",
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-        "avatar": "https://avatars.githubusercontent.com/u/44859376?v=4",
-        "description": "Fast code for PTA correlations from SGWB",
+        "uid": "github/tcollett/LensPop",
+        "url": "https://github.com/tcollett/LensPop",
+        "rel": "/software/repository/github/tcollett/LensPop",
+        "avatar": "https://avatars.githubusercontent.com/u/1520902?v=4",
+        "description": null,
         "topics": []
     },
     {
-        "uid": "github/rgmyr/corebreakout",
-        "url": "https://github.com/rgmyr/corebreakout",
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-        "avatar": "https://avatars1.githubusercontent.com/u/31017405?v=4",
-        "description": "Segmentation and depth-alignment of geological core sample image columns via Mask-RCNN",
+        "uid": "github/mrvollger/fibertools-rs",
+        "url": "https://github.com/mrvollger/fibertools-rs",
+        "rel": "/software/repository/github/mrvollger/fibertools-rs",
+        "avatar": "https://avatars.githubusercontent.com/u/6935283?v=4",
+        "description": "Tools for fiberseq data written in rust. ",
         "topics": []
     },
     {
-        "uid": "github/adamantine-sim/adamantine",
-        "url": "https://github.com/adamantine-sim/adamantine",
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-        "avatar": "https://avatars.githubusercontent.com/u/82662955?v=4",
-        "description": "Software to simulate heat transfer for additive manufacturing",
+        "uid": "github/mrvollger/rustybam",
+        "url": "https://github.com/mrvollger/rustybam",
+        "rel": "/software/repository/github/mrvollger/rustybam",
+        "avatar": "https://avatars.githubusercontent.com/u/6935283?v=4",
+        "description": "bioinformatics toolkit in rust",
         "topics": [
-            "3d-printing",
-            "heat-transfer",
-            "simulation"
+            "bioinformatics",
+            "genomics"
         ]
     },
     {
-        "uid": "github/GalagaBits/JWST-FGS-Spelunker",
-        "url": "https://github.com/GalagaBits/JWST-FGS-Spelunker",
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-        "description": "JWST FGS Spelunker is a package that assists and finds technical anomalies from the JWST and stellar properties from guidestars.",
-        "topics": [
-            "fgs",
-            "guidestar",
-            "jwst"
-        ]
+        "uid": "github/Hi-COLACode/Hi-COLA",
+        "url": "https://github.com/Hi-COLACode/Hi-COLA",
+        "rel": "/software/repository/github/Hi-COLACode/Hi-COLA",
+        "avatar": "https://avatars.githubusercontent.com/u/125999519?v=4",
+        "description": "Hi-COLA simulates cosmological large-scale structure for a wide class of Horndeski theories. Built using a COLA solver forked from FML by HAWinther.",
+        "topics": []
     },
     {
-        "uid": "github/RiccardoBiondi/segmentation",
-        "url": "https://github.com/RiccardoBiondi/segmentation",
-        "rel": "/software/repository/github/RiccardoBiondi/segmentation",
-        "avatar": "https://avatars.githubusercontent.com/u/48323959?v=4",
-        "description": "COVID-19 Lung Segmentation",
+        "uid": "github/TheFischerLab/FLEXR",
+        "url": "https://github.com/TheFischerLab/FLEXR",
+        "rel": "/software/repository/github/TheFischerLab/FLEXR",
+        "avatar": "https://avatars.githubusercontent.com/u/72938392?v=4",
+        "description": "Multi-conformer modeling of crystallographic protein structures",
+        "topics": []
+    },
+    {
+        "uid": "github/NielsenBerkeleyLab/sconce",
+        "url": "https://github.com/NielsenBerkeleyLab/sconce",
+        "rel": "/software/repository/github/NielsenBerkeleyLab/sconce",
+        "avatar": "https://avatars.githubusercontent.com/u/33462730?v=4",
+        "description": null,
+        "topics": []
+    },
+    {
+        "uid": "github/epic-astronomy/EPIC",
+        "url": "https://github.com/epic-astronomy/EPIC",
+        "rel": "/software/repository/github/epic-astronomy/EPIC",
+        "avatar": "https://avatars.githubusercontent.com/u/49343403?v=4",
+        "description": null,
+        "topics": []
+    },
+    {
+        "uid": "github/aqlaboratory/openfold",
+        "url": "https://github.com/aqlaboratory/openfold",
+        "rel": "/software/repository/github/aqlaboratory/openfold",
+        "avatar": "https://avatars.githubusercontent.com/u/8396911?v=4",
+        "description": "Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2",
         "topics": [
-            "ct-images",
-            "lung-regions",
-            "covid-19",
-            "segmentation"
+            "pytorch",
+            "protein-structure",
+            "alphafold2"
         ]
     },
     {
-        "uid": "github/husseinaluie/FlowSieve",
-        "url": "https://github.com/husseinaluie/FlowSieve",
-        "rel": "/software/repository/github/husseinaluie/FlowSieve",
-        "avatar": "https://avatars.githubusercontent.com/u/16828501?v=4",
-        "description": "FlowSieve coarse-graining code base",
+        "uid": "github/ABM4ALL/Melodie",
+        "url": "https://github.com/ABM4ALL/Melodie",
+        "rel": "/software/repository/github/ABM4ALL/Melodie",
+        "avatar": "https://avatars.githubusercontent.com/u/88455886?v=4",
+        "description": "A general framework for developing agent-based models in Python.",
         "topics": []
     },
     {
-        "uid": "github/CavendishAstrophysics/postmortem",
-        "url": "https://github.com/CavendishAstrophysics/postmortem",
-        "rel": "/software/repository/github/CavendishAstrophysics/postmortem",
-        "avatar": "https://avatars.githubusercontent.com/u/7826375?v=4",
-        "description": " Visibility data reduction and map making package from MRAO",
-        "topics": []
+        "uid": "github/stevengiacalone/triceratops",
+        "url": "https://github.com/stevengiacalone/triceratops",
+        "rel": "/software/repository/github/stevengiacalone/triceratops",
+        "avatar": "https://avatars.githubusercontent.com/u/35981550?v=4",
+        "description": "Tool for Rating Interesting Candidate Exoplanets and Reliability Analysis of Transits Originating from Proximate Stars",
+        "topics": [
+            "astronomy",
+            "astrophysics",
+            "astrophysical-signals",
+            "exoplanets",
+            "exoplanet-transits",
+            "statistical-analysis"
+        ]
     },
     {
-        "uid": "github/CavendishAstrophysics/anmap",
-        "url": "https://github.com/CavendishAstrophysics/anmap",
-        "rel": "/software/repository/github/CavendishAstrophysics/anmap",
-        "avatar": "https://avatars.githubusercontent.com/u/7826375?v=4",
-        "description": "MRAO image and data analysis system",
+        "uid": "github/RealTimeGenomics/rtg-tools",
+        "url": "https://github.com/RealTimeGenomics/rtg-tools",
+        "rel": "/software/repository/github/RealTimeGenomics/rtg-tools",
+        "avatar": "https://avatars.githubusercontent.com/u/10228299?v=4",
+        "description": "RTG Tools: Utilities for accurate VCF comparison and manipulation",
         "topics": []
     },
     {
-        "uid": "github/tribshms/tRIBS",
-        "url": "https://github.com/tribshms/tRIBS",
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-        "avatar": "https://avatars.githubusercontent.com/u/69878127?v=4",
-        "description": "TIN-based Real-time Integrated Basin Simulator (tRIBS) Distributed Hydrological Model",
+        "uid": "github/mingzehuang/latentcor",
+        "url": "https://github.com/mingzehuang/latentcor",
+        "rel": "/software/repository/github/mingzehuang/latentcor",
+        "avatar": "https://avatars.githubusercontent.com/u/70076112?v=4",
+        "description": "latentcor is an R package provides estimation for latent correlation with mixed data types (continuous, binary, truncated and ternary).",
         "topics": [
-            "hydrology",
-            "hydrology-modeling",
-            "hydrology-simulation"
+            "statistics",
+            "data-science",
+            "mixed-types",
+            "r",
+            "data-analysis",
+            "data-mining",
+            "machine-learning",
+            "data-structures",
+            "data-processing"
         ]
     },
     {
-        "uid": "github/gsuissa/hardCORE",
-        "url": "https://github.com/gsuissa/hardCORE",
-        "rel": "/software/repository/github/gsuissa/hardCORE",
-        "avatar": "https://avatars.githubusercontent.com/u/31299942?v=4",
-        "description": null,
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-            "molecular-dynamics",
-            "molecular-modeling",
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+            "multi-omics",
+            "data-integration",
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-        "description": "Cluster Astronomical Python Utilities",
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-        "description": "Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.",
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+        "avatar": "https://avatars2.githubusercontent.com/u/11677462?v=4",
+        "description": "Effortless method to record provenance in Python",
         "topics": [
-            "ipython",
-            "jupyter",
-            "data-science",
-            "notebook",
             "python",
-            "repl"
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+            "reproducible-research",
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+            "provenance"
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-        "url": "https://github.com/GeodynamicWorldBuilder/WorldBuilder",
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-        "description": "World Builder: An initial conditions generator for geodynamic modeling",
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+        "description": "SpotLinkTest",
         "topics": []
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-        "description": "a high-performance tool for analyzing .sam/.bam files (up to and including variant calling) in sequencing pipelines.",
+        "uid": "github/DICP1810/ComMap",
+        "url": "https://github.com/DICP1810/ComMap",
+        "rel": "/software/repository/github/DICP1810/ComMap",
+        "avatar": "https://avatars.githubusercontent.com/u/46855251?v=4",
+        "description": "CXMS generated cross-linking pairs mapping to structures",
         "topics": []
     },
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-        "uid": "github/AOtools/aotools",
-        "url": "https://github.com/AOtools/aotools",
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-        "description": "A useful set of tools for Adaptive Optics in Python",
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-            "python",
-            "astronomy-library",
-            "python-package"
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+        "description": "general purpose library for evaluating the likelihood of sequence evolution on trees",
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-        "description": "Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.",
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-            "primer",
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-            "qpcr",
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-            "easy-to-use",
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-            "python3",
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+        "description": "Black-hole kicks from numerical-relativity surrogate models",
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-        "description": "Visualized QA/QC of weather station data",
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+        "avatar": "https://avatars.githubusercontent.com/u/7237041?v=4",
+        "description": "Spinning black-hole binary POPulation Synthesis",
+        "topics": []
+    },
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+        "uid": "github/dgerosa/gwdet",
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+        "rel": "/software/repository/github/dgerosa/gwdet",
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+        "description": "Detectability of gravitational-wave signals from compact binary coalescences",
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+        "description": "Streamlining statistical analysis by using plotting keywords in Python.",
         "topics": [
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-            "quality-assurance",
-            "quality-control",
-            "weather-data",
-            "weather-station"
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-        "description": "Structural variation caller using third generation sequencing",
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+        "description": "Better statistics for regression (OLS and logistic)",
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+    },
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+        "avatar": "https://avatars.githubusercontent.com/u/34664884?v=4",
+        "description": "Ultrafast Sample Placement on Existing Trees",
         "topics": [
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-            "structural-variations",
-            "ngm-lr",
-            "pacbio",
-            "nanopore",
-            "structural-variation",
-            "bioconda"
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+            "phylogenetics",
+            "maximum-parsimony",
+            "usher",
+            "genome-browser",
+            "phylogenetic-placement"
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     },
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-        "uid": "github/fritzsedlazeck/SURVIVOR",
-        "url": "https://github.com/fritzsedlazeck/SURVIVOR",
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-        "avatar": "https://avatars.githubusercontent.com/u/2081951?v=4",
-        "description": "Toolset for SV simulation, comparison and filtering",
+        "uid": "github/babinyurii/recan",
+        "url": "https://github.com/babinyurii/recan",
+        "rel": "/software/repository/github/babinyurii/recan",
+        "avatar": "https://avatars.githubusercontent.com/u/28758465?v=4",
+        "description": "genetic distance plotting for recombination events analysis",
         "topics": [
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             "bioinformatics",
-            "structural-variations",
-            "simulator",
-            "comparison",
-            "survivor",
-            "vcf",
-            "bioconda"
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+            "genetic-distances",
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-        "description": "A Python library for solution chemistry",
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+        "description": "is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files.",
         "topics": []
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-        "avatar": "https://avatars.githubusercontent.com/u/23455639?v=4",
-        "description": "PyAutoLens: Open Source Strong Gravitational Lensing",
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+        "description": "Conveniently search, download, and process ArcticDEM and REMA products",
         "topics": [
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-            "gravitational-lensing",
-            "lens-modeling",
-            "cosmology",
-            "galaxy",
-            "gravitational-lenses",
-            "astrophysics",
-            "physics",
-            "image-processing",
-            "image",
-            "python"
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+            "digital-elevation-model",
+            "geospatial",
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+            "rema",
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-        "description": "PyAutoCTI: Charge Transfer Inefficiency Calibration",
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-        "description": "Code to reproduce the figures (data not included)",
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+        "description": "tools for working with genome variation graphs",
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+            "genomics",
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-        "description": "A generic flux/parameter population synthesis code",
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         "topics": [
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-            "interpolation",
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-            "ron-swanson",
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-        "description": "Biological Sequence Alignment",
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-        "description": "Recourse Explanation Library in JAX",
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-        "description": "CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)",
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-        "description": "Manipulate gravitational waveforms\u2014changing frames, and so on.",
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+        "url": "https://github.com/xinglunju/pyAmor",
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         "topics": []
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-            "python"
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+        "description": " Train neural networks based on geographic species occurrences, environmental data and existing IUCN Red List assessments to predict the conservation status of \"Not Evaluated\" or \"Data Deficient\" species, for any taxon or geographic region of interest. https://iucnn.github.io/IUCNN/",
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             "deep-learning",
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+        "description": "Tools for Flexible Spectroscopic Inference",
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-            "demultiplex",
-            "single-cell-sequencing",
-            "single-cell-rna-seq",
-            "single-cell-omics"
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-        "description": ":ring: Ring buffers",
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+        "description": "Package to compute trap-assisted electron and hole capture in semiconducting compounds",
+        "topics": [
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+            "semiconductors",
+            "electronic-structure",
+            "materials-design",
+            "solar-cells"
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-        "description": "This is the COVID-19 CovidSim microsimulation model developed by the MRC Centre for Global Infectious Disease Analysis hosted at Imperial College, London.",
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+        "description": "Python package to aid materials design",
+        "topics": [
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+            "materials-informatics",
+            "materials-screening",
+            "materials-design",
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         "topics": []
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-        "description": ":bar_chart::arrow_right::wavy_dash: Interpolating functions from C, in R",
+        "uid": "github/WMD-group/MacroDensity",
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+        "avatar": "https://avatars.githubusercontent.com/u/1716969?v=4",
+        "description": "Analyse electron density & potential grids using Python",
         "topics": [
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+            "electrostatic-potential",
+            "ionisation-potential",
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+        "description": "Monte Carlo codes to simulate polar domains in hybrid perovskite solar cells",
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+            "perovskite",
+            "photovoltaic",
+            "monte-carlo",
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-        "description": ":package::package::arrow_right::classical_building: Provision a library of R packages",
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+        "description": "BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design.",
         "topics": [
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+            "humanization",
+            "humanness",
+            "sapiens",
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-        "description": ":clock1130::soon::clock9: Delay differential equation solver",
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+        "description": "Compact Package Representations",
+        "topics": [
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+            "r",
+            "packaging-tool",
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-        "url": "https://github.com/mrc-ide/PlasmoMAPI",
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-        "avatar": "https://avatars.githubusercontent.com/u/25453642?v=4",
-        "description": "Mapping Plasmodium Spatial Connectivity from Genetic Data",
-        "topics": []
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+        "avatar": "https://avatars.githubusercontent.com/u/8927200?v=4",
+        "description": "Keep code, data, containers under control with git  and git-annex",
+        "topics": [
+            "python",
+            "git-annex",
+            "data-storage",
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-        "url": "https://github.com/mrc-ide/EpiEstim",
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-        "avatar": "https://avatars.githubusercontent.com/u/25453642?v=4",
-        "description": "A tool to estimate time varying instantaneous reproduction number during epidemics",
+        "uid": "github/mgieles/limepy",
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+        "rel": "/software/repository/github/mgieles/limepy",
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+        "description": "Lowered Isothermal Model Explorer in Python",
         "topics": []
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-        "url": "https://github.com/mrc-ide/individual",
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-        "avatar": "https://avatars.githubusercontent.com/u/25453642?v=4",
-        "description": "R Package for individual based epidemiological models",
+        "uid": "github/solislemuslab/minaa",
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         "topics": [
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-            "r-package",
-            "rstats",
-            "epidemiology",
-            "agent-based-modeling",
-            "individual-based-modelling",
-            "infectious-diseases"
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+            "graphlets",
+            "interaction-network",
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+            "network-alignment",
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-        "uid": "github/mrc-ide/global-lmic-reports-orderly",
-        "url": "https://github.com/mrc-ide/global-lmic-reports-orderly",
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-        "avatar": "https://avatars.githubusercontent.com/u/25453642?v=4",
-        "description": "COVID-19 forecast reports for LMICs",
+        "uid": "github/jlenain/flaapluc",
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+        "rel": "/software/repository/github/jlenain/flaapluc",
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+        "description": "Dirty but quick Fermi-LAT analysis",
         "topics": []
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-        "url": "https://github.com/mrc-ide/squire",
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-        "description": "SEIR transmission model of COVID-19. Documentation at:",
+        "uid": "github/wuzhenao/CPPLS-MLP",
+        "url": "https://github.com/wuzhenao/CPPLS-MLP",
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-        "description": "Flexible Markov chain monte carlo via reparameterization",
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         "topics": []
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-        "avatar": "https://avatars.githubusercontent.com/u/25453642?v=4",
-        "description": "\u16a9 A DSL for describing and solving differential equations in R",
+        "uid": "github/brainglobe/bg-atlasapi",
+        "url": "https://github.com/brainglobe/bg-atlasapi",
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+        "avatar": "https://avatars1.githubusercontent.com/u/64580400?v=4",
+        "description": "A lightweight python module to interact with atlases for systems neuroscience",
         "topics": [
-            "infrastructure"
+            "neuroscience",
+            "python",
+            "microscopy",
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+            "visualisation",
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+            "atlases"
         ]
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-        "url": "https://github.com/mrc-ide/dust",
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-        "description": ":sparkles::sparkles::sparkles: Iterate multiple realisations of stochastic models",
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+        "description": "Transit Analysis Package for IDL",
         "topics": []
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     {
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-        "url": "https://github.com/BritishGeologicalSurvey/pyvolcans",
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-        "description": "Python tool to identify analogue volcanoes via VOLCANS (https://doi.org/10.1007/s00445-019-1336-3)",
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+        "url": "https://github.com/CoLRev-Environment/bib-dedupe",
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-        "description": "Research workflows made easy, locally and in the Cloud.",
-        "topics": [
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-            "research-tool",
-            "google-cloud",
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+        "uid": "github/SebOliver/PCA",
+        "url": "https://github.com/SebOliver/PCA",
+        "rel": "/software/repository/github/SebOliver/PCA",
+        "avatar": "https://avatars.githubusercontent.com/u/8169971?v=4",
+        "description": "The folders in this file are those discussed in the paper: \"Principal Component Analysis and Radiative Transfer modelling of Spitzer IRS Spectra of Ultra Luminous Infrared Galaxies \" Hurley et al. 2012 Monthly Notices of the Royal Astronomical Society, 424 (3). pp. 2069-2078. ISSN 0035-8711 ",
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-        "description": "Bam Error Stats Tool (best): analysis of error types in aligned reads.",
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+        "description": "reference-guided aligner for next-generation sequencing technologies",
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-        "description": "Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more",
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+        "rel": "/software/repository/github/yongsukyee/uncertain_blackholemass",
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         "topics": [
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+            "neural-networks",
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-        "description": "Adaptive Trial Simulator",
+        "uid": "github/igvteam/igv-reports",
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+        "description": "Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.",
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-        "description": "Modules for Experiments in Stellar Astrophysics",
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         "topics": [
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         "topics": [
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-            "asymmetric-uncertainties",
-            "error-propagation",
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+            "high-energy-physics",
+            "machine-learning",
+            "neural-network",
+            "particle-physics",
+            "physics-analysis",
+            "python",
+            "pytorch",
+            "neutrino-oscillations",
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-        "description": "toolkit for those nonsensical ontologies",
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-            "python",
-            "python3",
-            "text",
-            "tfidf",
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-            "jabberwocky"
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-        "description": "Exoplanet detection in RVs with DNest4 and GPs",
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+        "description": "A Python package that identifies 17 Sustainable Development Goals and their 169 Targets in text, and classifies into social, environmental, and economic sustainability.",
         "topics": [
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-            "radial-velocity",
-            "bayesian",
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-            "hacktoberfest"
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+            "regular-expressions",
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+            "sustainability",
+            "sustainability-developoment-goals",
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-        "description": "Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene.",
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+        "description": "Torrent Suite",
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+        "description": "Basic Exploration and Analysis of Drop-seq Data",
         "topics": []
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-        "description": "A Julia extension package to Wavelets.jl",
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-            "filter",
-            "ac-wavelets",
-            "stationary-wavelets"
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-            "reactions",
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-        "description": "A software package for simulating white dwarf mergers with CASTRO",
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+            "python",
+            "quality-assurance",
+            "quality-control",
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-        "description": "Contains the source code of the extension ERNIE from the WPES 2021 paper \"In-Depth Technical and Legal Analysis of Tracking on Health Related Websites with ERNIE Extension\"",
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+        "description": "Epitopedia: identifying molecular mimicry of known immune epitopes",
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-        "description": "A library to model a time series as a Continuous-time ARMA process",
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-        "description": "Beiwe is a smartphone-based digital phenotyping research platform. This is the Beiwe backend code",
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+        "url": "https://github.com/ysekig/GPMsDB-tk",
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-        "description": "Machine learning package for data-driven modeling and simulation in LAMMPs.",
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         "topics": [
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-            "machine-learning",
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+            "protein-ligand-interactions",
+            "web-application",
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+            "web",
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+        "description": "Easy and versatile open-source  code to explore Kepler, K2 and TESS data in the search for exoplanets",
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+        "description": "Python package  and command line tool for epitope prediction",
+        "topics": [
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+            "immunology",
+            "bioinformatics"
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-        "description": "Antigen receptor gene profiler: A software framework that provides analytics services on NGS Data",
-        "topics": []
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+        "description": "command line and desktop tool for microbial variant calling",
+        "topics": [
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+            "genomics",
+            "ngs-pipeline",
+            "python",
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     {
-        "uid": "github/SchmollerLab/Cell_ACDC",
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-        "description": "A Python GUI-based framework for segmentation, tracking and cell cycle annotations of micrscopy data",
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+        "description": "Nonlinear reconstruction code",
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-        "uid": "github/RWTH-EBC/AixCaliBuHA",
-        "url": "https://github.com/RWTH-EBC/AixCaliBuHA",
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-        "avatar": "https://avatars.githubusercontent.com/u/8121773?v=4",
-        "description": "Wield this tool to be King Arthur of your models.",
+        "uid": "github/FraunhoferIWES/foxes",
+        "url": "https://github.com/FraunhoferIWES/foxes",
+        "rel": "/software/repository/github/FraunhoferIWES/foxes",
+        "avatar": "https://avatars.githubusercontent.com/u/88376562?v=4",
+        "description": "Farm Optimization and eXtended yield Evaluation Software",
         "topics": []
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-        "description": "FIWARE Library for Python (FiLiP) to work with FIWARE API",
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-        "description": null,
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+        "description": "FitsMap: A Simple, Lightweight Tool For Displaying Interactive Astronomical Image and Catalog Data",
         "topics": []
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-        "uid": "github/INRS-France/predicting_alarm_audibility",
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+        "description": "Inference of couplings in proteins and RNAs from sequence variation",
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-            "alarms",
-            "convolutional-neural-network",
-            "dataset",
-            "psychoacoustics",
-            "occupational-noise"
+            "protein-sequences",
+            "sequence-alignments",
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+            "protein-structure",
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-        "uid": "github/baoxingsong/AnchorWave",
-        "url": "https://github.com/baoxingsong/AnchorWave",
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-        "description": "Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation",
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+        "description": "GeneWalk identifies relevant gene functions for a biological context using network representation learning",
         "topics": [
-            "genome",
-            "genome-alignment"
+            "functional-genomics",
+            "machine-learning-algorithm"
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-        "url": "https://github.com/jhayer/baargin",
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-        "description": "Bacterial Assembly and Antimicrobial Resistance Genes In NextFlow",
+        "uid": "github/perfanalytics/pose2sim",
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         "topics": [
-            "antimicrobial-resistance",
-            "bacteria",
-            "genomics",
-            "wgs",
-            "nextflow-pipeline",
-            "workflow"
+            "kinematics",
+            "markerless",
+            "openpose",
+            "opensim",
+            "3d-kinematics",
+            "biomechanics",
+            "motion-capture",
+            "pose-estimation",
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-        "uid": "github/alastair-droop/fqtools",
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-        "avatar": "https://avatars.githubusercontent.com/u/13238060?v=4",
-        "description": "An efficient FASTQ manipulation suite",
+        "uid": "github/mfem/mfem",
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+        "avatar": "https://avatars.githubusercontent.com/u/12879105?v=4",
+        "description": "Lightweight, general, scalable C++ library for finite element methods",
         "topics": [
-            "fastq",
-            "fastq-files",
-            "next-generation-sequencing",
-            "bioinformatics"
+            "finite-elements",
+            "high-order",
+            "high-performance-computing",
+            "parallel-computing",
+            "amr",
+            "computational-science",
+            "fem",
+            "scientific-computing",
+            "hpc",
+            "math-physics",
+            "radiuss"
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-        "uid": "github/jacksund/simmate",
-        "url": "https://github.com/jacksund/simmate",
-        "rel": "/software/repository/github/jacksund/simmate",
-        "avatar": "https://avatars.githubusercontent.com/u/47992949?v=4",
-        "description": "The Simulated Materials Ecosystem (Simmate) is a toolbox and framework for computational materials research.",
+        "uid": "github/sciapp/sampledb",
+        "url": "https://github.com/sciapp/sampledb",
+        "rel": "/software/repository/github/sciapp/sampledb",
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+        "description": "Sample and Measurement Metadata Database",
         "topics": []
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     {
-        "uid": "github/Markusjsommer/BalrogCPP",
-        "url": "https://github.com/Markusjsommer/BalrogCPP",
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-        "avatar": "https://avatars.githubusercontent.com/u/16809312?v=4",
-        "description": "A universal protein model for prokaryotic gene prediction",
-        "topics": []
+        "uid": "github/epruesse/SINA",
+        "url": "https://github.com/epruesse/SINA",
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+        "avatar": "https://avatars.githubusercontent.com/u/2774474?v=4",
+        "description": "SINA - Reference based multiple sequence alignment",
+        "topics": [
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+            "alignment",
+            "sequence",
+            "16s",
+            "silva",
+            "bioinformatics"
+        ]
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     {
-        "uid": "github/Multiversario/satcand",
-        "url": "https://github.com/Multiversario/satcand",
-        "rel": "/software/repository/github/Multiversario/satcand",
-        "avatar": "https://avatars.githubusercontent.com/u/50124332?v=4",
-        "description": "Tools to apply theoretical constraints of orbital stability and tidal migration to KOI exomoon candidates. ",
+        "uid": "github/davideamato/NAPLES",
+        "url": "https://github.com/davideamato/NAPLES",
+        "rel": "/software/repository/github/davideamato/NAPLES",
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+        "description": "NAPLES (Numerical Analysis of PLanetary EncounterS) is a Fortran code for the numerical analysis of close encounters in the Circular, Restricted Three-Body Problem using regularized formulations.",
         "topics": []
     },
     {
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-        "avatar": "https://avatars.githubusercontent.com/u/10989149?v=4",
-        "description": "Scattering fits of Fast Radio Burst and pulsar data.",
+        "uid": "github/kadyb/rgugik",
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+        "rel": "/software/repository/github/kadyb/rgugik",
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+        "description": "Download datasets from Polish Head Office of Geodesy and Cartography",
         "topics": [
-            "astronomy",
-            "astrophysics",
-            "fastradiobursts",
-            "pulsars",
-            "ionised-media",
-            "radio-astronomy"
+            "geodesy",
+            "cartography",
+            "gis",
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     },
     {
-        "uid": "github/abrupt-climate/hyper-canny",
-        "url": "https://github.com/abrupt-climate/hyper-canny",
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-        "avatar": "https://avatars1.githubusercontent.com/u/26436945?v=4",
-        "description": "High dimensional Canny edge detection",
+        "uid": "github/choosehappy/HoverFast",
+        "url": "https://github.com/choosehappy/HoverFast",
+        "rel": "/software/repository/github/choosehappy/HoverFast",
+        "avatar": "https://avatars.githubusercontent.com/u/9681868?v=4",
+        "description": "Blazing fast nuclei segmentation for brightfield Whole Slide Images",
         "topics": []
     },
     {
-        "uid": "github/Ramialison-Lab-ARMI/3DCardiomics",
-        "url": "https://github.com/Ramialison-Lab-ARMI/3DCardiomics",
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-        "avatar": "https://avatars2.githubusercontent.com/u/11384379?v=4",
-        "description": "A visual system for the exploration of cardiac transcriptome data",
+        "uid": "github/cosmostat/pmclib",
+        "url": "https://github.com/CosmoStat/pmclib",
+        "rel": "/software/repository/github/cosmostat/pmclib",
+        "avatar": "https://avatars.githubusercontent.com/u/16947949?v=4",
+        "description": "Population Monte Carlo (PMC) library",
         "topics": []
     },
     {
-        "uid": "github/DLTK/DLTK",
-        "url": "https://github.com/DLTK/DLTK",
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-        "description": "Deep Learning Toolkit for Medical Image Analysis",
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-        "description": "Astronomy software tools for reducing data from an integral field spectrograph (IFS).",
+        "uid": "github/cosmostat/nicaea",
+        "url": "https://github.com/CosmoStat/nicaea",
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+        "avatar": "https://avatars.githubusercontent.com/u/16947949?v=4",
+        "description": "Numerical routines to calculate cosmology and weak-lensing quantities.",
         "topics": []
     },
     {
-        "uid": "github/drupke/ifsfit",
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-        "description": "Astronomy spectral fitting software optimized for integral field spectroscopy (IFS).",
+        "uid": "github/cosmostat/CosmoPMC",
+        "url": "https://github.com/CosmoStat/CosmoPMC",
+        "rel": "/software/repository/github/cosmostat/CosmoPMC",
+        "avatar": "https://avatars.githubusercontent.com/u/16947949?v=4",
+        "description": "Cosmology sampling with Population Monte Carlo (PMC)",
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     {
-        "uid": "github/drupke/questfit",
-        "url": "https://github.com/drupke/questfit",
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-        "description": "fitter for mid-infrared galaxy spectra",
+        "uid": "github/SCECcode/pycsep",
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+        "rel": "/software/repository/github/SCECcode/pycsep",
+        "avatar": "https://avatars.githubusercontent.com/u/8519819?v=4",
+        "description": "Tools to help earthquake forecast model developers build and evaluate their forecasts",
         "topics": []
     },
     {
-        "uid": "github/Johannes-Sahlmann/pygacs",
-        "url": "https://github.com/Johannes-Sahlmann/pygacs",
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-        "avatar": "https://avatars.githubusercontent.com/u/13909167?v=4",
-        "description": "Toolkit to manipulate Gaia catalogue tables hosted at ESAC archive.",
+        "uid": "github/rossfadely/star-galaxy-classification",
+        "url": "https://github.com/rossfadely/star-galaxy-classification",
+        "rel": "/software/repository/github/rossfadely/star-galaxy-classification",
+        "avatar": "https://avatars.githubusercontent.com/u/1253511?v=4",
+        "description": "Classification of astronomical objects using photometry",
         "topics": []
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-        "uid": "github/ImperialCollegeLondon/rcs_cluster_scripts",
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-        "avatar": "https://avatars.githubusercontent.com/u/1220306?v=4",
-        "description": "A collection of handy scripts for use with the Imperial College Research Computing Service cluster",
+        "uid": "github/tronsgaard/barycorr",
+        "url": "https://github.com/tronsgaard/barycorr",
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+        "description": "Python interface for barycentric correction web applets",
         "topics": []
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     {
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-        "avatar": "https://avatars.githubusercontent.com/u/1220306?v=4",
-        "description": "Analysis of the genomic architecture and functional role of myocardial trabeculae",
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+        "avatar": "https://avatars.githubusercontent.com/u/32853892?v=4",
+        "description": "A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!",
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-        "description": "Python application template with automated QA and Docker image publishing",
+        "uid": "github/nhcrisp/ADBSat",
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+        "description": "Aerodynamic Database for Satellites",
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-        "description": "The next generation of EpiCollect, multiple forms, more fields and more control. We recommend using Apache 2.2 or later, PHP 5.3 or later and MySQL 5.5 or later.",
+        "uid": "github/Singh-Lab/DeMaSk",
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+        "description": "Prediction of protein substitution impact using a directional substitution matrix and homolog alignments",
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-        "description": "Highly Comparative Graph Analysis - Code for network phenotyping ",
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+        "description": "Using Knowledge In Networks",
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-        "description": "Simulation of High Aspect Ratio aeroplanes and wind turbines in Python: a nonlinear aeroelastic code",
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-            "simulation",
-            "aeronautics",
-            "structures",
-            "structural-dynamics",
-            "wind-turbines"
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+        "description": "GUI + API for processing and visualizing Calcium imaging data.  Largely based on the IDL software \"VIEW\" developed by Giovanni Galizia. Implemented in Python by Ajayrama Kumaraswamy",
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     {
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-        "description": "epidemia package",
+        "uid": "github/ajosephy/Clustering",
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+        "description": "Modified RRATrap + new DBSCAN codes to cluster single pulse events.",
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-        "url": "https://github.com/ImperialCollegeLondon/django-drf-filepond",
-        "rel": "/software/repository/github/ImperialCollegeLondon/django-drf-filepond",
+        "uid": "github/ImperialCollegeLondon/rcs-pacemakers",
+        "url": "https://github.com/ImperialCollegeLondon/rcs-pacemakers",
+        "rel": "/software/repository/github/ImperialCollegeLondon/rcs-pacemakers",
         "avatar": "https://avatars.githubusercontent.com/u/1220306?v=4",
-        "description": "A Django app providing a server implemention for the Filepond file upload library",
+        "description": "Example of GPU-accelerated machine learning on the RCS compute cluster using Jupyter and conda",
         "topics": [
-            "file-upload",
-            "filepond",
-            "django-application"
+            "jupyter",
+            "pytorch",
+            "computer-vision",
+            "machine-learning",
+            "python"
         ]
     },
     {
@@ -57351,14 +56872,6 @@
         "description": "Wind Farm Simulator",
         "topics": []
     },
-    {
-        "uid": "github/ImperialCollegeLondon/UVLM",
-        "url": "https://github.com/ImperialCollegeLondon/UVLM",
-        "rel": "/software/repository/github/ImperialCollegeLondon/UVLM",
-        "avatar": "https://avatars.githubusercontent.com/u/1220306?v=4",
-        "description": "Unsteady Vortex Lattice Method for Aeroelasticity in C++",
-        "topics": []
-    },
     {
         "uid": "github/ImperialCollegeLondon/safedata",
         "url": "https://github.com/ImperialCollegeLondon/safedata",
@@ -57367,6 +56880,14 @@
         "description": "An R package for discovering and using data from the SAFE Project",
         "topics": []
     },
+    {
+        "uid": "github/ImperialCollegeLondon/magda_tools",
+        "url": "https://github.com/ImperialCollegeLondon/magda_tools",
+        "rel": "/software/repository/github/ImperialCollegeLondon/magda_tools",
+        "avatar": "https://avatars.githubusercontent.com/u/1220306?v=4",
+        "description": "A collection of tools for working with MAGDA data files",
+        "topics": []
+    },
     {
         "uid": "github/ImperialCollegeLondon/sap-voicebox",
         "url": "https://github.com/ImperialCollegeLondon/sap-voicebox",
@@ -57375,6 +56896,42 @@
         "description": "Speech Processing Toolbox for MATLAB",
         "topics": []
     },
+    {
+        "uid": "github/ImperialCollegeLondon/adam",
+        "url": "https://github.com/ImperialCollegeLondon/adam",
+        "rel": "/software/repository/github/ImperialCollegeLondon/adam",
+        "avatar": "https://avatars.githubusercontent.com/u/1220306?v=4",
+        "description": null,
+        "topics": []
+    },
+    {
+        "uid": "github/ImperialCollegeLondon/champ",
+        "url": "https://github.com/ImperialCollegeLondon/champ",
+        "rel": "/software/repository/github/ImperialCollegeLondon/champ",
+        "avatar": "https://avatars.githubusercontent.com/u/1220306?v=4",
+        "description": null,
+        "topics": []
+    },
+    {
+        "uid": "github/ImperialCollegeLondon/django-drf-filepond",
+        "url": "https://github.com/ImperialCollegeLondon/django-drf-filepond",
+        "rel": "/software/repository/github/ImperialCollegeLondon/django-drf-filepond",
+        "avatar": "https://avatars.githubusercontent.com/u/1220306?v=4",
+        "description": "A Django app providing a server implemention for the Filepond file upload library",
+        "topics": [
+            "file-upload",
+            "filepond",
+            "django-application"
+        ]
+    },
+    {
+        "uid": "github/ImperialCollegeLondon/pytest_template_application",
+        "url": "https://github.com/ImperialCollegeLondon/pytest_template_application",
+        "rel": "/software/repository/github/ImperialCollegeLondon/pytest_template_application",
+        "avatar": "https://avatars.githubusercontent.com/u/1220306?v=4",
+        "description": "Python application template with automated QA and Docker image publishing",
+        "topics": []
+    },
     {
         "uid": "github/ImperialCollegeLondon/research-software-directory-data",
         "url": "https://github.com/ImperialCollegeLondon/research-software-directory",
@@ -57384,43 +56941,76 @@
         "topics": []
     },
     {
-        "uid": "github/ImperialCollegeLondon/adam",
-        "url": "https://github.com/ImperialCollegeLondon/adam",
-        "rel": "/software/repository/github/ImperialCollegeLondon/adam",
+        "uid": "github/ImperialCollegeLondon/rcs_cluster_scripts",
+        "url": "https://github.com/ImperialCollegeLondon/rcs_cluster_scripts",
+        "rel": "/software/repository/github/ImperialCollegeLondon/rcs_cluster_scripts",
         "avatar": "https://avatars.githubusercontent.com/u/1220306?v=4",
-        "description": null,
+        "description": "A collection of handy scripts for use with the Imperial College Research Computing Service cluster",
         "topics": []
     },
     {
-        "uid": "github/ImperialCollegeLondon/magda_tools",
-        "url": "https://github.com/ImperialCollegeLondon/magda_tools",
-        "rel": "/software/repository/github/ImperialCollegeLondon/magda_tools",
+        "uid": "github/ImperialCollegeLondon/EpiCollectplus",
+        "url": "https://github.com/ImperialCollegeLondon/EpiCollectplus",
+        "rel": "/software/repository/github/ImperialCollegeLondon/EpiCollectplus",
         "avatar": "https://avatars.githubusercontent.com/u/1220306?v=4",
-        "description": "A collection of tools for working with MAGDA data files",
+        "description": "The next generation of EpiCollect, multiple forms, more fields and more control. We recommend using Apache 2.2 or later, PHP 5.3 or later and MySQL 5.5 or later.",
         "topics": []
     },
     {
-        "uid": "github/ImperialCollegeLondon/rcs-pacemakers",
-        "url": "https://github.com/ImperialCollegeLondon/rcs-pacemakers",
-        "rel": "/software/repository/github/ImperialCollegeLondon/rcs-pacemakers",
+        "uid": "github/ImperialCollegeLondon/sharpy",
+        "url": "https://github.com/ImperialCollegeLondon/sharpy",
+        "rel": "/software/repository/github/ImperialCollegeLondon/sharpy",
         "avatar": "https://avatars.githubusercontent.com/u/1220306?v=4",
-        "description": "Example of GPU-accelerated machine learning on the RCS compute cluster using Jupyter and conda",
+        "description": "Simulation of High Aspect Ratio aeroplanes and wind turbines in Python: a nonlinear aeroelastic code",
         "topics": [
-            "jupyter",
-            "pytorch",
-            "computer-vision",
-            "machine-learning",
-            "python"
+            "aeroelasticity",
+            "simulation",
+            "aeronautics",
+            "structures",
+            "structural-dynamics",
+            "wind-turbines"
         ]
     },
     {
-        "uid": "github/ImperialCollegeLondon/champ",
-        "url": "https://github.com/ImperialCollegeLondon/champ",
-        "rel": "/software/repository/github/ImperialCollegeLondon/champ",
+        "uid": "github/ImperialCollegeLondon/UVLM",
+        "url": "https://github.com/ImperialCollegeLondon/UVLM",
+        "rel": "/software/repository/github/ImperialCollegeLondon/UVLM",
         "avatar": "https://avatars.githubusercontent.com/u/1220306?v=4",
-        "description": null,
+        "description": "Unsteady Vortex Lattice Method for Aeroelasticity in C++",
+        "topics": []
+    },
+    {
+        "uid": "github/ImperialCollegeLondon/epidemia",
+        "url": "https://github.com/ImperialCollegeLondon/epidemia",
+        "rel": "/software/repository/github/ImperialCollegeLondon/epidemia",
+        "avatar": "https://avatars.githubusercontent.com/u/1220306?v=4",
+        "description": "epidemia package",
+        "topics": []
+    },
+    {
+        "uid": "github/ImperialCollegeLondon/fractalgenetics",
+        "url": "https://github.com/ImperialCollegeLondon/fractalgenetics",
+        "rel": "/software/repository/github/ImperialCollegeLondon/fractalgenetics",
+        "avatar": "https://avatars.githubusercontent.com/u/1220306?v=4",
+        "description": "Analysis of the genomic architecture and functional role of myocardial trabeculae",
         "topics": []
     },
+    {
+        "uid": "github/ImperialCollegeLondon/hcga",
+        "url": "https://github.com/barahona-research-group/hcga",
+        "rel": "/software/repository/github/ImperialCollegeLondon/hcga",
+        "avatar": "https://avatars.githubusercontent.com/u/51328597?v=4",
+        "description": "Highly Comparative Graph Analysis - Code for network phenotyping ",
+        "topics": [
+            "networks",
+            "feature-extraction",
+            "classification-algorithm",
+            "graph-features",
+            "interpretable-features",
+            "graph-analysis-toolbox",
+            "graph-embedding"
+        ]
+    },
     {
         "uid": "github/ImperialCollegeLondon/ICLOCS",
         "url": "https://github.com/ImperialCollegeLondon/ICLOCS",
@@ -57430,10012 +57020,10595 @@
         "topics": []
     },
     {
-        "uid": "github/liniguez/Insplico_simulations",
-        "url": "https://github.com/liniguez/Insplico_simulations",
-        "rel": "/software/repository/github/liniguez/Insplico_simulations",
-        "avatar": "https://avatars.githubusercontent.com/u/36859003?v=4",
+        "uid": "github/tbisbas/PDFchem",
+        "url": "https://github.com/tbisbas/PDFchem",
+        "rel": "/software/repository/github/tbisbas/PDFchem",
+        "avatar": "https://avatars.githubusercontent.com/u/26414918?v=4",
+        "description": "Estimate the average abundance of species from Av-PDFs",
+        "topics": []
+    },
+    {
+        "uid": "github/Effective-Quadratures/Effective-Quadratures",
+        "url": "https://github.com/Effective-Quadratures/Effective-Quadratures",
+        "rel": "/software/repository/github/Effective-Quadratures/Effective-Quadratures",
+        "avatar": "https://avatars3.githubusercontent.com/u/20475765?v=4",
         "description": null,
+        "topics": [
+            "polynomials",
+            "quadratures",
+            "least-squares",
+            "interpolation",
+            "approximation",
+            "effective-quadratures",
+            "python",
+            "matrix-factorization"
+        ]
+    },
+    {
+        "uid": "github/GenomicParisCentre/toulligQC",
+        "url": "https://github.com/GenomiqueENS/toulligQC",
+        "rel": "/software/repository/github/GenomicParisCentre/toulligQC",
+        "avatar": "https://avatars.githubusercontent.com/u/7766622?v=4",
+        "description": "A post sequencing QC tool for Oxford Nanopore sequencers",
         "topics": []
     },
     {
-        "uid": "github/equipeGST/RiboDoc",
-        "url": "https://github.com/equipeGST/RiboDoc",
-        "rel": "/software/repository/github/equipeGST/RiboDoc",
-        "avatar": "https://avatars.githubusercontent.com/u/75135539?v=4",
-        "description": "Docker based tool for ribosome profiling (RiboSeq) analysis",
+        "uid": "github/biswajitmb/DarpanX",
+        "url": "https://github.com/biswajitmb/DarpanX",
+        "rel": "/software/repository/github/biswajitmb/DarpanX",
+        "avatar": "https://avatars.githubusercontent.com/u/65720146?v=4",
+        "description": "DarpanX is a Python 3 package that provides functionality to compute reflectivity and other specular optical functions of a multilayer or single layer mirror for different energy and angles as well as to fit the XRR measurements of the mirrors.",
         "topics": []
     },
     {
-        "uid": "github/viromelab/tracespipe",
-        "url": "https://github.com/viromelab/tracespipe",
-        "rel": "/software/repository/github/viromelab/tracespipe",
-        "avatar": "https://avatars.githubusercontent.com/u/52006995?v=4",
-        "description": "Reconstruction and analysis of viral and host genomes at multi-organ level",
+        "uid": "github/mdshw5/pyfaidx",
+        "url": "https://github.com/mdshw5/pyfaidx",
+        "rel": "/software/repository/github/mdshw5/pyfaidx",
+        "avatar": "https://avatars.githubusercontent.com/u/819554?v=4",
+        "description": "Efficient pythonic random access to fasta subsequences",
         "topics": [
-            "virus",
-            "metagenomics",
-            "pipeline",
-            "forensics",
-            "clinical",
-            "virology",
-            "mtdna",
-            "multi-organ",
-            "ngs",
-            "ngs-pipeline"
+            "python",
+            "bioinformatics",
+            "fasta",
+            "indexing",
+            "dna",
+            "protein",
+            "genomics",
+            "bgzf",
+            "samtools"
         ]
     },
     {
-        "uid": "github/spglib/spgrep",
-        "url": "https://github.com/spglib/spgrep",
-        "rel": "/software/repository/github/spglib/spgrep",
-        "avatar": "https://avatars.githubusercontent.com/u/64672219?v=4",
-        "description": "On-the-fly generator of space-group irreducible representations",
+        "uid": "github/yaml2sbml-dev/yaml2sbml",
+        "url": "https://github.com/yaml2sbml-dev/yaml2sbml",
+        "rel": "/software/repository/github/yaml2sbml-dev/yaml2sbml",
+        "avatar": "https://avatars.githubusercontent.com/u/69810793?v=4",
+        "description": "Little tool to convert an ODE model specified in the YAML format to SBML.",
         "topics": [
-            "crystallography",
-            "group-theory",
-            "irreducible-representations",
-            "materials-science",
-            "python",
-            "representation-theory"
+            "sbml",
+            "petab",
+            "ode",
+            "ode-model",
+            "yaml"
         ]
     },
     {
-        "uid": "github/ecological-cities/home2park",
-        "url": "https://github.com/ecological-cities/home2park",
-        "rel": "/software/repository/github/ecological-cities/home2park",
-        "avatar": "https://avatars.githubusercontent.com/u/65454754?v=4",
-        "description": "home2park: Assess the spatial provision of urban parks",
+        "uid": "github/alexriss/SpmImageTycoon.jl",
+        "url": "https://github.com/alexriss/SpmImageTycoon.jl",
+        "rel": "/software/repository/github/alexriss/SpmImageTycoon.jl",
+        "avatar": "https://avatars.githubusercontent.com/u/1452525?v=4",
+        "description": "Organize Scanning Probe Microscopy (SPM, STM, AFM) Images and Spectra.",
         "topics": [
-            "cities",
-            "recreation",
-            "parks",
-            "geoinformatics",
-            "spatial"
+            "spm",
+            "afm",
+            "stm",
+            "julia",
+            "electron",
+            "javascript",
+            "julialang",
+            "spectroscopy"
+        ]
+    },
+    {
+        "uid": "github/Rohit-Kundu/ET-NET_Covid-Detection",
+        "url": "https://github.com/Rohit-Kundu/ET-NET_Covid-Detection",
+        "rel": "/software/repository/github/Rohit-Kundu/ET-NET_Covid-Detection",
+        "avatar": "https://avatars.githubusercontent.com/u/80497999?v=4",
+        "description": "An Ensemble Transfer Learning Network for COVID-19 detection from lung CT-scan images.",
+        "topics": [
+            "deep-learning",
+            "ensemble-learning",
+            "covid-19",
+            "ct-scan-images"
+        ]
+    },
+    {
+        "uid": "github/rezeebe/orbitN",
+        "url": "https://github.com/rezeebe/orbitN",
+        "rel": "/software/repository/github/rezeebe/orbitN",
+        "avatar": "https://avatars.githubusercontent.com/u/89117187?v=4",
+        "description": "Symplectic integrator for near-Keplerian planetary systems",
+        "topics": []
+    },
+    {
+        "uid": "github/Muhammad-Arif-NUST/BVP_Pred_Unb",
+        "url": "https://github.com/Muhammad-Arif-NUST/BVP_Pred_Unb",
+        "rel": "/software/repository/github/Muhammad-Arif-NUST/BVP_Pred_Unb",
+        "avatar": "https://avatars2.githubusercontent.com/u/27894155?v=4",
+        "description": null,
+        "topics": []
+    },
+    {
+        "uid": "github/FlowModelingControl/flowtorch",
+        "url": "https://github.com/FlowModelingControl/flowtorch",
+        "rel": "/software/repository/github/FlowModelingControl/flowtorch",
+        "avatar": "https://avatars.githubusercontent.com/u/89638677?v=4",
+        "description": "flowTorch - a Python library for analysis and reduced-order modeling of fluid flows",
+        "topics": [
+            "machine-learning",
+            "dynamic-mode-decomposition",
+            "proper-orthogonal-decomposition",
+            "pytorch",
+            "jupyter",
+            "openfoam",
+            "netcdf",
+            "tau",
+            "davis",
+            "csv",
+            "hdf5",
+            "ipsp",
+            "dmd",
+            "pod",
+            "cnm"
         ]
     },
     {
-        "uid": "github/floodlight-sports/floodlight",
-        "url": "https://github.com/floodlight-sports/floodlight",
-        "rel": "/software/repository/github/floodlight-sports/floodlight",
-        "avatar": "https://avatars.githubusercontent.com/u/92793483?v=4",
-        "description": "Python package for streamlined analysis of sports data.",
+        "uid": "github/lnferris/ocean_data_tools",
+        "url": "https://github.com/lnferris/ocean_data_tools",
+        "rel": "/software/repository/github/lnferris/ocean_data_tools",
+        "avatar": "https://avatars1.githubusercontent.com/u/24570061?v=4",
+        "description": "A MATLAB toolbox for interacting with bulk freely-available oceanographic data.",
         "topics": [
-            "python",
-            "sports-analytics",
-            "sports-stats"
+            "oceanography",
+            "matlab",
+            "hycom",
+            "argo-floats",
+            "physical-oceanography",
+            "ocean",
+            "ocean-data"
         ]
     },
     {
-        "uid": "github/qMRLab/qMRLab",
-        "url": "https://github.com/qMRLab/qMRLab",
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-        "description": "Quantitative Magnetic Resonance Imaging Made Easy with qMRLab: a Software for Data Simulation, Analysis and Visualization",
+        "uid": "github/bmoster/emerge",
+        "url": "https://github.com/bmoster/emerge",
+        "rel": "/software/repository/github/bmoster/emerge",
+        "avatar": "https://avatars.githubusercontent.com/u/53537956?v=4",
+        "description": "Emerge - the smooth empirical model for galaxy formation",
         "topics": [
-            "mri",
-            "analysis",
-            "data-simulation",
-            "quantitative",
-            "magnetization",
-            "relaxometry",
-            "mapping"
+            "cosmology",
+            "dark-matter",
+            "galaxy-formation"
         ]
     },
     {
-        "uid": "github/RTIInternational/gobbli",
-        "url": "https://github.com/RTIInternational/gobbli",
-        "rel": "/software/repository/github/RTIInternational/gobbli",
-        "avatar": "https://avatars.githubusercontent.com/u/10167032?v=4",
-        "description": "Deep learning with text doesn't have to be scary.",
+        "uid": "github/martinlackner/abcvoting",
+        "url": "https://github.com/martinlackner/abcvoting",
+        "rel": "/software/repository/github/martinlackner/abcvoting",
+        "avatar": "https://avatars.githubusercontent.com/u/46762723?v=4",
+        "description": "Python implementations of approval-based committee (multi-winner) voting rules",
         "topics": [
-            "docker",
-            "deep-learning",
+            "voting",
             "python",
-            "nlp"
+            "research",
+            "social-choice",
+            "social-choice-theory",
+            "multiwinnervoting",
+            "approval-voting",
+            "voting-methods",
+            "committee"
         ]
     },
     {
-        "uid": "github/Astro-Sean/escatter",
-        "url": "https://github.com/Astro-Sean/escatter",
-        "rel": "/software/repository/github/Astro-Sean/escatter",
-        "avatar": "https://avatars.githubusercontent.com/u/24963439?v=4",
-        "description": "Python script to perform Monte Carlo simulations of electron scattering events in interacting supernovae.",
+        "uid": "github/mtakahiro/gsf",
+        "url": "https://github.com/mtakahiro/gsf",
+        "rel": "/software/repository/github/mtakahiro/gsf",
+        "avatar": "https://avatars.githubusercontent.com/u/15098413?v=4",
+        "description": "Grism SED Fitting package",
         "topics": []
     },
     {
-        "uid": "github/Astro-Sean/autophot",
-        "url": "https://github.com/Astro-Sean/autophot",
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-        "avatar": "https://avatars.githubusercontent.com/u/24963439?v=4",
-        "description": "The AUTOmated Photometry Of Transients (AutoPhOT) is a novel automated pipeline that is designed for rapid, publication-quality photometry of transients.",
+        "uid": "github/portsmouth/cmbview",
+        "url": "https://github.com/portsmouth/cmbview",
+        "rel": "/software/repository/github/portsmouth/cmbview",
+        "avatar": "https://avatars.githubusercontent.com/u/2774364?v=4",
+        "description": "Automatically exported from code.google.com/p/cmbview",
         "topics": []
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-        "url": "https://github.com/GaryBAYLOR/mixR",
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-        "avatar": "https://avatars.githubusercontent.com/u/12647683?v=4",
-        "description": "R package for fitting finite mixture models for both raw and binned data",
+        "uid": "github/gtayana/CVRMS",
+        "url": "https://github.com/gtayana/CVRMS",
+        "rel": "/software/repository/github/gtayana/CVRMS",
+        "avatar": "https://avatars2.githubusercontent.com/u/39774067?v=4",
+        "description": "Marker selection for genome-wide prediction",
         "topics": []
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-        "url": "https://github.com/vprusso/toqito",
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-        "avatar": "https://avatars.githubusercontent.com/u/1562214?v=4",
-        "description": "|toqito> (Theory of Quantum Information Toolkit) in Python :snake:",
+        "uid": "github/SWE-UniStuttgart/Qlunc",
+        "url": "https://github.com/SWE-UniStuttgart/Qlunc",
+        "rel": "/software/repository/github/SWE-UniStuttgart/Qlunc",
+        "avatar": "https://avatars.githubusercontent.com/u/36884435?v=4",
+        "description": "A numerical framework to estimate hardware and data processing uncertainties of a lidar device",
         "topics": [
-            "quantum-computing",
-            "python",
-            "quantum-information",
-            "matrix-analysis",
-            "python-3",
-            "unitaryhack",
-            "physics",
-            "quantum"
+            "uncertainty",
+            "wind-lidar",
+            "openlidar"
         ]
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     {
-        "uid": "github/ci-for-research/self-hosted-runners",
-        "url": "https://github.com/ci-for-research/self-hosted-runners",
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+        "description": "pycosie (pie cozy) is a complimentary suite of analyses software written in Python meant to be analyzed on Technicolor Dawn and quasarcosie outputs. It is the Pyhton derivative of ARCOSIE.",
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-            "travel",
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-            "cplusplus",
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-        "description": "Sandbox for celestial mechanics calculations",
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+        "avatar": "https://avatars.githubusercontent.com/u/45267108?v=4",
+        "description": " A tool for cell instance aware segmentation in densely packed 3D volumetric images ",
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+            "deep-learning",
+            "bioinformatics",
+            "neural-network",
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-            "gaia",
-            "python"
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-        "description": "Galactic Dynamics in python",
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+        "description": "ChainoPy: A Python Library for Discrete Time Markov Chain based stochastic analysis",
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-            "astronomy",
-            "python",
-            "dynamics",
-            "scientific-computing",
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-        "description": "Tools for dealing with APOGEE data",
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+        "description": "River and basin profiler",
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             "python",
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-        "description": "Simple M2M setup to explore some new ideas",
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+        "description": "sigh, a program to cure optimism and automatically scrape worldwide data about reported disaster and perturbation events.",
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+        "description": "Terminal tools to record/monitor from Phidget 1048_1B USB-thermocouple devices",
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+        "description": "Python library for reading SWIFT data. Uses unyt and h5py.",
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+        "avatar": "https://avatars.githubusercontent.com/u/5255480?v=4",
+        "description": "Mirror of the Quantum ESPRESSO repository. Please do not post Issues or pull requests here. Use gitlab.com/QEF/q-e instead.",
+        "topics": [
+            "quantum-espresso"
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-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": "Provide machine-readable descriptions of your data assets",
+        "uid": "github/BonsonW/slow5curl",
+        "url": "https://github.com/BonsonW/slow5curl",
+        "rel": "/software/repository/github/BonsonW/slow5curl",
+        "avatar": "https://avatars.githubusercontent.com/u/57890355?v=4",
+        "description": "A library and tool for accessing remote BLOW5 files.",
         "topics": [
-            "fair-data",
-            "metadata",
-            "dataset-interface",
-            "restful-api",
-            "rdf",
-            "dcat",
-            "dcmi"
+            "api",
+            "c",
+            "fetching-data-from-server",
+            "library",
+            "slow5",
+            "tool",
+            "blow5",
+            "command-line-tool",
+            "curl"
         ]
     },
     {
-        "uid": "github/NLeSC/pattyvis",
-        "url": "https://github.com/NLeSC/PattyVis",
-        "rel": "/software/repository/github/NLeSC/pattyvis",
-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": "Webgl pointcloud visualization of the Via Appia based on potree",
-        "topics": []
+        "uid": "github/taoliu/MACS",
+        "url": "https://github.com/macs3-project/MACS",
+        "rel": "/software/repository/github/taoliu/MACS",
+        "avatar": "https://avatars.githubusercontent.com/u/66320751?v=4",
+        "description": "MACS -- Model-based Analysis of ChIP-Seq",
+        "topics": [
+            "chip-seq",
+            "atac-seq",
+            "dnase-seq",
+            "peak-caller",
+            "python",
+            "poisson-equation",
+            "macs"
+        ]
     },
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-        "uid": "github/NLeSC/esibayes",
-        "url": "https://github.com/NLeSC/esibayes",
-        "rel": "/software/repository/github/NLeSC/esibayes",
-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": "Optimization and state estimation of dynamic models",
+        "uid": "github/simon-smart88/shinyscholar",
+        "url": "https://github.com/simon-smart88/shinyscholar",
+        "rel": "/software/repository/github/simon-smart88/shinyscholar",
+        "avatar": "https://avatars.githubusercontent.com/u/137152810?v=4",
+        "description": "A template for creating modular shiny applications that meet academic standards and are reproducible",
         "topics": []
     },
     {
-        "uid": "github/NLeSC/eAstroViz",
-        "url": "https://github.com/NLeSC/eAstroViz",
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-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": null,
+        "uid": "github/yqiuu/spectuner",
+        "url": "https://github.com/yqiuu/spectuner",
+        "rel": "/software/repository/github/yqiuu/spectuner",
+        "avatar": "https://avatars.githubusercontent.com/u/26683739?v=4",
+        "description": "A tool for automated line identification of interstellar molecules.",
         "topics": []
     },
     {
-        "uid": "github/NLeSC/Massive-PotreeConverter",
-        "url": "https://github.com/NLeSC/Massive-PotreeConverter",
-        "rel": "/software/repository/github/NLeSC/Massive-PotreeConverter",
-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": "Convert massive pointcloud, for example ahn2 (640 Billion points) to potree format.",
-        "topics": []
+        "uid": "github/yqiuu/starduster",
+        "url": "https://github.com/yqiuu/starduster",
+        "rel": "/software/repository/github/yqiuu/starduster",
+        "avatar": "https://avatars.githubusercontent.com/u/26683739?v=4",
+        "description": "A multi-wavelength SED model based on radiative transfer and deep learning.",
+        "topics": [
+            "deep-neural-networks",
+            "radiative-transfer",
+            "astronomy"
+        ]
     },
     {
-        "uid": "github/NLeSC/cptm",
-        "url": "https://github.com/NLeSC/cptm",
-        "rel": "/software/repository/github/NLeSC/cptm",
-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": "Cross-Perspective Topic Modeling",
+        "uid": "github/awsteiner/o2scl",
+        "url": "https://github.com/awsteiner/o2scl",
+        "rel": "/software/repository/github/awsteiner/o2scl",
+        "avatar": "https://avatars.githubusercontent.com/u/5480902?v=4",
+        "description": "Object-oriented Scientific Computing Library",
         "topics": []
     },
     {
-        "uid": "github/NLeSC/MAGMa",
-        "url": "https://github.com/NLeSC/MAGMa",
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-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": "eMetabolomics project: Mass Annotation based on in silico Generated Metabolites",
+        "uid": "github/awsteiner/bamr",
+        "url": "https://github.com/awsteiner/bamr",
+        "rel": "/software/repository/github/awsteiner/bamr",
+        "avatar": "https://avatars.githubusercontent.com/u/5480902?v=4",
+        "description": "Bayesian Analysis of neutron star Mass and Radius observations",
         "topics": []
     },
     {
-        "uid": "github/NLeSC/xtas",
-        "url": "https://github.com/NLeSC/xtas",
-        "rel": "/software/repository/github/NLeSC/xtas",
-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": "Distributed text analysis suite based on Celery",
-        "topics": []
+        "uid": "github/LindaNab/mecor",
+        "url": "https://github.com/LindaNab/mecor",
+        "rel": "/software/repository/github/LindaNab/mecor",
+        "avatar": "https://avatars.githubusercontent.com/u/34091575?v=4",
+        "description": "measurement error correction",
+        "topics": [
+            "measurement-error",
+            "statistics",
+            "linear-models"
+        ]
     },
     {
-        "uid": "github/NLeSC/hadrianus-scripts",
-        "url": "https://github.com/NLeSC/hadrianus-scripts",
-        "rel": "/software/repository/github/NLeSC/hadrianus-scripts",
-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": "Scripts used for the Hadrianus project",
+        "uid": "github/exoclam/gaspery",
+        "url": "https://github.com/exoclam/gaspery",
+        "rel": "/software/repository/github/exoclam/gaspery",
+        "avatar": "https://avatars.githubusercontent.com/u/16911363?v=4",
+        "description": null,
         "topics": []
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-        "uid": "github/NLeSC/SalientDetector-python",
-        "url": "https://github.com/NLeSC/SalientDetector-python",
-        "rel": "/software/repository/github/NLeSC/SalientDetector-python",
-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": "Python package for Large Scale Imaging research @ NLeSC",
+        "uid": "github/lanzen/ampliconnoise",
+        "url": "https://github.com/lanzen/ampliconnoise",
+        "rel": "/software/repository/github/lanzen/ampliconnoise",
+        "avatar": "https://avatars.githubusercontent.com/u/7382097?v=4",
+        "description": "Automatically exported from code.google.com/p/ampliconnoise",
         "topics": []
     },
     {
-        "uid": "github/NLeSC/boatswain",
-        "url": "https://github.com/NLeSC/boatswain",
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-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": "A simple build system for docker images",
-        "topics": []
+        "uid": "github/dokester/BayesicFitting",
+        "url": "https://github.com/dokester/BayesicFitting",
+        "rel": "/software/repository/github/dokester/BayesicFitting",
+        "avatar": "https://avatars.githubusercontent.com/u/10372360?v=4",
+        "description": "Bayesian fitting package",
+        "topics": [
+            "fitters",
+            "data-analysis",
+            "modeling",
+            "bayesian",
+            "evidence",
+            "calibration-toolbox",
+            "jupyter-notebook",
+            "history",
+            "java",
+            "hope",
+            "nested-sampling",
+            "test-harness",
+            "pypi",
+            "exercise"
+        ]
     },
     {
-        "uid": "github/NLeSC/SalientDetector-matlab",
-        "url": "https://github.com/NLeSC/SalientDetector-matlab",
-        "rel": "/software/repository/github/NLeSC/SalientDetector-matlab",
-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": "MATLAB Software for Large Scale Imaging research @ NLeSc",
-        "topics": []
+        "uid": "github/amkrajewski/nimCSO",
+        "url": "https://github.com/amkrajewski/nimCSO",
+        "rel": "/software/repository/github/amkrajewski/nimCSO",
+        "avatar": "https://avatars.githubusercontent.com/u/54290107?v=4",
+        "description": "nim Composition Space Optimization is a high-performance tool leveraging metaprogramming to implement several methods for selecting components (data dimensions) in compositional datasets, as to optimize the data availability and density for applications such as machine learning.",
+        "topics": [
+            "data-analysis",
+            "data-optimization",
+            "data-science",
+            "materials-informatics",
+            "metaprogramming",
+            "nim",
+            "nim-lang"
+        ]
     },
     {
-        "uid": "github/NLeSC/OCTSegmentation",
-        "url": "https://github.com/NLeSC/OCTSegmentation",
-        "rel": "/software/repository/github/NLeSC/OCTSegmentation",
-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": "EYR4-OCTSEG ",
+        "uid": "github/spjuhel/BoARIO",
+        "url": "https://github.com/spjuhel/BoARIO",
+        "rel": "/software/repository/github/spjuhel/BoARIO",
+        "avatar": "https://avatars.githubusercontent.com/u/10011382?v=4",
+        "description": "Python implementation of ARIO model",
         "topics": []
     },
     {
-        "uid": "github/NLeSC/mcfly",
-        "url": "https://github.com/NLeSC/mcfly",
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-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": "A deep learning tool for time series classification",
-        "topics": []
+        "uid": "github/markheckmann/OpenRepGrid.ic",
+        "url": "https://github.com/markheckmann/OpenRepGrid.ic",
+        "rel": "/software/repository/github/markheckmann/OpenRepGrid.ic",
+        "avatar": "https://avatars.githubusercontent.com/u/152927?v=4",
+        "description": "shiny app for interpretive clustering of repgrids:",
+        "topics": [
+            "repgrid",
+            "clustering",
+            "repertory",
+            "grid",
+            "constructs",
+            "shiny"
+        ]
     },
     {
-        "uid": "github/NLeSC/eEcology-script-wrapper",
-        "url": "https://github.com/NLeSC/eEcology-script-wrapper",
-        "rel": "/software/repository/github/NLeSC/eEcology-script-wrapper",
-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": "Web application to make Matlab, R scripts available.",
+        "uid": "github/molgenis/vibe-suppl",
+        "url": "https://github.com/molgenis/vibe-suppl",
+        "rel": "/software/repository/github/molgenis/vibe-suppl",
+        "avatar": "https://avatars.githubusercontent.com/u/1688158?v=4",
+        "description": "Variant Interpretation using Biological Evidence - supplemental files",
         "topics": []
     },
     {
-        "uid": "github/NLeSC/baklava",
-        "url": "https://github.com/NLeSC/baklava",
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-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": "Deploy a Kubernetes cluster and big data services on the cloud.",
+        "uid": "github/molgenis/graph2vr",
+        "url": "https://github.com/molgenis/Graph2VR",
+        "rel": "/software/repository/github/molgenis/graph2vr",
+        "avatar": "https://avatars.githubusercontent.com/u/1688158?v=4",
+        "description": "Visualising / Exploring Linked Data (SPARQL Construct queries) in Virtual Reality.",
         "topics": [
-            "kubernetes",
-            "kubernetes-deployment",
-            "opennebula",
-            "ansible",
-            "terraform",
-            "kubespray",
-            "glusterfs"
+            "graph-visualization",
+            "phd-project",
+            "prototype",
+            "querying",
+            "sparql",
+            "virtual-reality"
         ]
     },
     {
-        "uid": "github/NLeSC/eEcology-SMS-reciever",
-        "url": "https://github.com/NLeSC/eEcology-SMS-reciever",
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-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": "Webservice to store SMS messages into a database table",
-        "topics": []
+        "uid": "github/lucianolorenti/ceruleo",
+        "url": "https://github.com/lucianolorenti/ceruleo",
+        "rel": "/software/repository/github/lucianolorenti/ceruleo",
+        "avatar": "https://avatars.githubusercontent.com/u/106397?v=4",
+        "description": "CeRULEo: Comprehensive utilitiEs for Remaining Useful Life Estimation methOds",
+        "topics": [
+            "predictive-maintenance",
+            "time-series",
+            "remaining-useful-life",
+            "remaining-useful-life-prediction"
+        ]
     },
     {
-        "uid": "github/NLeSC/compressing-the-sky",
-        "url": "https://github.com/NLeSC/compressing-the-sky",
-        "rel": "/software/repository/github/NLeSC/compressing-the-sky",
-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": "Compressing the Sky project with CWI DA",
+        "uid": "github/elnjensen/Tapir",
+        "url": "https://github.com/elnjensen/Tapir",
+        "rel": "/software/repository/github/elnjensen/Tapir",
+        "avatar": "https://avatars.githubusercontent.com/u/2545845?v=4",
+        "description": "Tools for planning astronomical observations (transit visibility, airmass plots, finding charts)",
         "topics": []
     },
     {
-        "uid": "github/NLeSC/DiVE",
-        "url": "https://github.com/NLeSC/DiVE",
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-        "description": "An interactive 3D web viewer of up to million points on one screen that represent data. Provides interaction for viewing high-dimensional data that has been previously embedded in 3D or 2D. Based on graphosaurus.js and three.js. For a Linux release of a complete embedding+visualization pipeline please visit https://github.com/sonjageorgievska/Embed-Dive.",
+        "uid": "github/jGetMove/jGetMove",
+        "url": "https://github.com/jGetMove/jGetMove",
+        "rel": "/software/repository/github/jGetMove/jGetMove",
+        "avatar": "https://avatars.githubusercontent.com/u/25670842?v=4",
+        "description": "GetMove algorithm in java",
         "topics": [
-            "interactive-visualizations",
-            "3d-data",
-            "embedded-data",
-            "web-application",
-            "manifold-learning",
-            "non-linear-dimensionality-reduction",
-            "high-dimensional-data"
+            "java",
+            "getmove",
+            "clustering-algorithm"
         ]
     },
     {
-        "uid": "github/NLeSC/Chemical-Analytics-Platform",
-        "url": "https://github.com/NLeSC/Chemical-Analytics-Platform",
-        "rel": "/software/repository/github/NLeSC/Chemical-Analytics-Platform",
-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": "Scripts to create chemical analytics platform based on Knime",
+        "uid": "github/tofflemire/saphires",
+        "url": "https://github.com/tofflemire/saphires",
+        "rel": "/software/repository/github/tofflemire/saphires",
+        "avatar": "https://avatars.githubusercontent.com/u/5099866?v=4",
+        "description": "Analysis tools for stellar spectroscopy",
         "topics": []
     },
     {
-        "uid": "github/NLeSC/spot",
-        "url": "https://github.com/NLeSC/spot",
-        "rel": "/software/repository/github/NLeSC/spot",
-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": "Try the demo",
+        "uid": "github/liangcheng-hrbmu/EnrichDO",
+        "url": "https://github.com/liangcheng-hrbmu/EnrichDO",
+        "rel": "/software/repository/github/liangcheng-hrbmu/EnrichDO",
+        "avatar": "https://avatars.githubusercontent.com/u/15272581?v=4",
+        "description": "a Bioinformatics Tool for Annotating and Enrichment Analysis with Disease Ontology",
+        "topics": []
+    },
+    {
+        "uid": "github/EigenDev/simbi",
+        "url": "https://github.com/EigenDev/simbi",
+        "rel": "/software/repository/github/EigenDev/simbi",
+        "avatar": "https://avatars.githubusercontent.com/u/29236993?v=4",
+        "description": "SIMBI is a 3D Heterogeneous Relativistic Gas Dynamics Code using the Cython framework to blend together C++, CUDA, HIP, and Python.",
+        "topics": []
+    },
+    {
+        "uid": "github/rjtanner/StarburstPy",
+        "url": "https://github.com/rjtanner/StarburstPy",
+        "rel": "/software/repository/github/rjtanner/StarburstPy",
+        "avatar": "https://avatars.githubusercontent.com/u/58440445?v=4",
+        "description": "Python Wrapper for Starburst99",
         "topics": [
-            "spot",
-            "visualization",
-            "crossfilter",
-            "javascript",
-            "cross-platform",
-            "web-app"
+            "astronomy",
+            "astrophysics",
+            "population-synthesis",
+            "stellar-populations"
         ]
     },
     {
-        "uid": "github/NLeSC/SalientDescriptor-matlab",
-        "url": "https://github.com/NLeSC/SalientDescriptor-matlab",
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-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": null,
+        "uid": "github/JuliaQX/QXTools.jl",
+        "url": "https://github.com/JuliaQX/QXTools.jl",
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+        "avatar": "https://avatars.githubusercontent.com/u/77590457?v=4",
+        "description": "Julia package for quantum circuit simulation using tensor networks",
         "topics": []
     },
     {
-        "uid": "github/NLeSC/eEcology-Annotation-WS",
-        "url": "https://github.com/NLeSC/eEcology-Annotation-WS",
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-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": "Webservice for eEcology Annotation project.",
+        "uid": "github/rossjturner/RAiSERed",
+        "url": "https://github.com/rossjturner/RAiSERed",
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-        "description": "Xenon Job Webservice",
+        "uid": "github/SIOSlab/exodetbox",
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+        "rel": "/software/repository/github/SIOSlab/exodetbox",
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+        "description": "Methods for finding planets sharing a common (s,dmag)",
         "topics": []
     },
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-        "avatar": "https://avatars0.githubusercontent.com/u/48052855?v=4",
-        "description": "Perform files and jobs operations with Xenon library from command line",
+        "uid": "github/jiujiezz/tsnad",
+        "url": "https://github.com/jiujiezz/tsnad",
+        "rel": "/software/repository/github/jiujiezz/tsnad",
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+        "description": "Detecting somatic mutations and predicting tumor-specific neo-antigens",
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     },
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-        "description": "Netherlands eScience Center - Shifting Concepts Through Time project",
+        "uid": "github/theonefromnowhere/FitCov",
+        "url": "https://github.com/theonefromnowhere/FitCov",
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+        "description": "The code for the Fitted Covariance generation based on %paper link%",
         "topics": []
     },
     {
-        "uid": "github/NLeSC/EEG-epilepsy-diagnosis",
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-        "avatar": "https://avatars0.githubusercontent.com/u/1705862?v=4",
-        "description": "Detection of Epilepsy from EEG data (14 channel x 5 minutes)",
+        "uid": "github/davidechicco/geneExpressionFromGEO",
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+        "description": "Deconvolution for Wastewater Genomics",
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-            "systematic-reviews",
-            "bibliographics",
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+        "description": "PhotoDissociation Region Toolbox Python module",
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-        "description": "Python bindings to the pointcloud library (pcl)",
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-        "description": "A minimalistic framework for Numerical Association Rule Mining",
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         "topics": [
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+        "description": "Persistent advantage learning dueling double DQN for the Arcade Learning Environment",
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-        "description": "The Abundance Matching Box for the Epoch of Reionization (AMBER) is a semi-numerical code for modeling the cosmic dawn and reionization.",
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+        "description": "Future Gadget Machine",
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-            "adversarial-attacks",
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-        "description": "a generic C++ library for image analysis",
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+        "description": "Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding proteins of phages. It presents improvements over using handcrafted sequence properties and eliminates the need to manually extract and select features from phage sequences",
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+        "description": "Genomewide Epistasis Analysis on Bacteria",
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+            "bacterial-genome-analysis",
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+            "linkage-disequilibrium",
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-        "description": "Coupled geophysical-geochemical-orbital evolution model of icy worlds.",
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+        "description": "Routines to plot magnetic fields of planets in our solar system",
+        "topics": [
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+            "planetary-science",
+            "magnetic-fields",
+            "planetary-data",
+            "planetary",
+            "python",
+            "matplotlib"
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     },
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-        "description": "Filter and slice Nanopore reads which have been basecalled with Albacore.",
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+        "description": "Uniform Manifold Approximation and Projection",
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+            "dimensionality-reduction",
+            "visualization",
+            "machine-learning",
+            "topological-data-analysis"
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+    },
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+        "uid": "github/pierrehoudayer/RUBIS",
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+        "avatar": "https://avatars.githubusercontent.com/u/91544829?v=4",
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-        "description": "Multiple Protein Structure Alignment at Scale with FoldMason",
+        "uid": "github/learningsimulator/learningsimulator",
+        "url": "https://github.com/learningsimulator/learningsimulator",
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+        "avatar": "https://avatars.githubusercontent.com/u/61417129?v=4",
+        "description": "Learning Simulator: A simulation software for animal and human learning",
         "topics": [
-            "bioinformatics",
-            "msa",
-            "protein-structure"
+            "associative-learning",
+            "reinforcement-learning",
+            "behavior",
+            "simulation",
+            "mathematical-modelling",
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         ]
     },
     {
-        "uid": "github/steineggerlab/foldseek",
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+        "description": "Realtime quality control for mass spectrometry data acquisition",
         "topics": [
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     {
-        "uid": "github/timkartar/RNAscape",
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-        "description": "Geometry faithful 2D RNA visualization",
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+        "description": "Atmosphere retrieval code for exoplanets",
+        "topics": []
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+        "uid": "github/Acellera/htmd",
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+        "avatar": "https://avatars.githubusercontent.com/u/7776839?v=4",
+        "description": "HTMD: Programming Environment for Molecular Discovery",
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-            "nucleic-acids",
-            "rna",
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-            "visualization",
-            "webserver"
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-        "uid": "github/Sheng-Qi-Yang/HIILines",
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-        "avatar": "https://avatars.githubusercontent.com/u/31641147?v=4",
-        "description": "An analytical ionized ISM emission line model. ",
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+        "description": "A library for working with Cellular Automata, for Python.",
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+            "complexity",
+            "complex-systems",
+            "nonlinear-dynamics",
+            "computation"
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+        "description": "General tools for Astronomical Time Series in Python",
         "topics": []
     },
     {
-        "uid": "github/stillwater-sc/universal",
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-        "description": "Large collection of number systems providing custom arithmetic and mixed-precision algorithms for AI, Machine Learning, Computer Vision, Signal Processing, CAE, EDA, control, optimization, estimation, and approximation.",
+        "uid": "github/inpefess/gym-saturation",
+        "url": "https://github.com/inpefess/gym-saturation",
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+        "avatar": "https://avatars.githubusercontent.com/u/1696493?v=4",
+        "description": "an OpenAI Gym environment for saturation provers",
+        "topics": []
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+        "uid": "github/SihaoCheng/WD_models",
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+        "description": "I provide a python package for transformations between WD photometry (Gaia, SDSS, WISE, and many more) and physical parameters, based on interpolation of existing atmosphere grid and cooling models. If you use this tool, please cite this website and the corresponding papers of atmosphere grid (synthetic colors) and cooling models. ",
+        "topics": []
+    },
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+        "uid": "github/Kuifje02/vrpy",
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         "topics": [
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-            "embedded-systems",
-            "artificial-intelligence",
-            "digital-signal-processing"
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+        "description": "Python implementation of basic period detection and fitting routines for astronomical time series.",
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+        "description": "(EHdn) is a suite of tools for detecting novel expansions of short tandem repeats (STRs).",
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+        "description": "Ancestry and Kinship Tools",
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-        "description": "a reference-guided assembler that assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples.",
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+        "description": "a method for rapid genotype refinement for whole-genome sequencing data using multi-variate normal distribution.  Whole-genome low-coverage sequencing has been combined with linkage-disequilibrium (LD) based genotype refinement to accurately and cost-effectively infer genotypes in large cohorts of individuals.",
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-        "description": "A fully expanded halo model to calculate the non-linear power spectrum in a mixed dark matter cosmology with ultra-light axions",
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+        "description": "A deep learning-based tool to identify splice variants",
         "topics": []
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     {
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-        "description": "Macrobot is an open source image analysis software for studying plant-pathogen interactions on macroscopic level.",
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+        "avatar": "https://avatars.githubusercontent.com/u/11462464?v=4",
+        "description": "Strelka2 germline and somatic small variant caller",
         "topics": [
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-            "image-analysis",
-            "python",
-            "computer-vision"
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+            "indels",
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-        "uid": "github/SAIL-Labs/AMICAL",
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+        "description": "Structural variant and indel caller for mapped sequencing data",
         "topics": [
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         "topics": [
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-        "description": "Artificial Solver Testing Environment",
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-        "description": "Finite Volume (FV) and high-order Discontinuous Galerkin (DG) solver",
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+        "description": "PyFOSC is a pipeline toolbox for spectroscopic data reduction written in Python. It can be used for FOSC data from Xinglong/Lijiang 2-meter telescopes.",
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-        "description": "Scale-able loading, linking and anonymisation of DICOM images for healthcare research environments (e.g. Safe Havens)",
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+        "description": "Powerful, efficient particle trajectory analysis in scientific Python.",
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+            "analysis",
+            "scientific-computing",
+            "python",
+            "monte-carlo-simulation",
+            "data-analysis",
+            "spatial-analysis",
+            "particle-system",
+            "computational-chemistry",
+            "computational-physics",
+            "science",
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-        "description": "A many-core transient searching pipeline, designed to search in real-time for Fast Radio Bursts.",
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+        "description": "Collection of tools to help initialize and manipulate shapes.",
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+            "computational-geometry",
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         "topics": [
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-        "description": "General code for birth/death stuff within DNest3",
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-        "description": "Encode/decode a crystal structure to/from a grayscale PNG image for direct use with image-based machine learning models such as Palette.",
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-            "materials-informatics",
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+        "description": "Toolkit to manipulate Gaia catalogue tables hosted at ESAC archive.",
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-        "description": "Spatial Optimization",
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+        "description": "Single-pulse Search Approach",
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-            "regionalization",
-            "facility-location",
-            "routing",
-            "transportation",
-            "spatial-analysis",
-            "location-allocation",
-            "location-modeling",
-            "resource-planning",
-            "python"
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         "topics": []
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-        "description": "SPAtial GrapHs: nETworks, Topology, & Inference",
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-            "network-analysis",
-            "python",
-            "graph-theory",
-            "topology",
-            "pysal",
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+            "radio-astronomy",
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         "topics": []
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-        "url": "https://github.com/tanhevg/GpABC.jl",
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-        "description": "Fisher forecasting for 21cm intensity mapping and spectroscopic galaxy surveys",
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-        "description": "Marker selection for genome-wide prediction",
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-        "description": "Open Source Optimization of Dynamic Multidisciplinary Systems",
+        "uid": "github/surhudm/savitzky_golay_with_errors",
+        "url": "https://github.com/surhudm/savitzky_golay_with_errors",
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         "topics": [
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-            "optimal-control",
-            "trajectory-optimization",
-            "pseudospectral",
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-        "uid": "github/kimberg/voxbo",
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-        "description": "free software for brain image analysis",
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         "topics": []
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-            "normalizing-flows",
-            "variational-inference",
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-        "description": "Tools for processing UMI RNA-tag data",
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-        "description": "FijiRelax: 3D+t multi-echo spin-echo sequences MRI analysis",
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+        "description": "A Python framework for agent-based simulations of (radio) SETI observations",
         "topics": [
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-            "imagej",
-            "imagej-plugins",
-            "java",
-            "modeling",
-            "mri",
-            "relaxation-time"
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+            "extraterrestrial",
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+        "description": "This C++ code models the climate of Earthlike planets under the effects of an arbitrary number and arrangement of other bodies, such as stars, planets and moons.",
+        "topics": [
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+            "planet",
+            "star",
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-        "description": "A tooL for Prokaryotic Phylogeny And Clustering Analysis",
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+        "description": "TensoriAl Classification of Hydrodynamic Elements",
         "topics": [
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-        "description": "The implementation of the Small Bodies Geophysical Analysis Tool (SBGAT)",
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         "topics": [
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-            "uncertainty-quantification"
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+        "description": "BurnMan is a library for modeling mantle thermodynamics and thermoelasticity constrained by mineral physics experiments.",
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+        "description": "A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information",
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-            "regional-data",
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+            "astrophysics",
+            "athena",
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+        "description": "Quickly compute the CMB powerspectra and matter transfer functions.",
         "topics": []
     },
     {
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-            "crp",
-            "escherichia-coli",
-            "libsvm",
-            "feature-selection",
-            "predcrp",
-            "transcription-factor"
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-            "multiview",
-            "pytorch",
-            "cca-zoo",
-            "multiset-cca",
-            "tensor-cca",
-            "pls"
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+            "c-plus-plus",
+            "python",
+            "computational-chemistry",
+            "chemistry",
+            "physics"
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-        "description": "Detecting somatic mutations and predicting tumor-specific neo-antigens",
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+        "description": "Image processing in Python",
         "topics": [
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-            "modeling",
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             "python",
-            "reconstruction",
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-        "description": "ReFramed: metabolic modeling package",
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+        "description": "Deep Convolutional Neural Networks and Machine Learning Models for Analyzing Stellar and Exoplanetary Telescope Spectra",
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-            "modeling",
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-        "topics": []
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+            "electronic-structure-calculations",
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+            "chemistry",
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+            "quantum-chemistry"
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-        "description": "A Python wrapper for ELSEPA",
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-            "radio",
-            "astronomy",
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+            "astromodels",
+            "data-analysis",
+            "interpolation",
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+        "description": "Possibly the fastest DataFrame-agnostic quality check library in town.",
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+            "performance-metrics",
+            "pyspark",
+            "python3",
+            "unit-testing",
+            "pydeequ",
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+            "snowpark",
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-            "seismology",
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+        "description": "Digital Geometry Tools and Algorithm Library",
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+            "topology",
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-        "uid": "github/robdjeff/eagles",
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-        "description": "Estimating AGes from Lithium Equivalent widthS",
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+        "description": "Pipeline for analysis of Dropseq single cell data",
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+            "single-cell-rna-seq",
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-        "uid": "github/ni1o1/transbigdata",
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-        "description": "A Python package develop for transportation spatio-temporal big data processing, analysis and visualization.",
+        "uid": "github/BIMSBbioinfo/pigx_rnaseq",
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+        "avatar": "https://avatars.githubusercontent.com/u/6482905?v=4",
+        "description": "Pipeline for RNAseq",
         "topics": [
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-            "data-visualization",
-            "data-analysis",
-            "transportation",
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-            "data-quality-analysis",
-            "data-pre-processing",
-            "taxi-gps-data",
-            "bus-gps-data",
-            "bike-sharing-data"
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     },
     {
-        "uid": "github/bwvdnbro/HydroCode1D",
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-        "description": "Basic 1D finite volume code that can handle pure 1D problems and problems with 2D and 3D spherical symmetry.",
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-        "uid": "github/bwvdnbro/CMacIonize",
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-        "avatar": "https://avatars.githubusercontent.com/u/7336967?v=4",
-        "description": "C++ Monte Carlo photoionization and radiation hydrodynamics code.",
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         "topics": [
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-            "radiative-transfer",
-            "hydrodynamics",
-            "post-processing"
+            "chromatin-structure",
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+            "single-cell-chromatin-accessibility",
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     {
-        "uid": "github/the-rccg/hw2d",
-        "url": "https://github.com/the-rccg/hw2d",
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-            "fluid-simulation",
-            "fusion",
-            "plasma-physics",
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+        "description": "A kernel-independent fast multipole method library with Python interface.",
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-        "uid": "github/emhuff/Balrog",
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-        "avatar": "https://avatars.githubusercontent.com/u/2623781?v=4",
-        "description": "DES image simulation software: We dug too deeply and too greedily",
+        "uid": "github/editeodoro/Bbarolo",
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+        "description": "Bbarolo is a 3D fitting tool to derive the kinematics of galaxies from emission-line observations.",
         "topics": []
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     {
-        "uid": "github/timoast/signac",
-        "url": "https://github.com/timoast/signac",
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-        "description": "R toolkit for the analysis of single-cell chromatin data",
+        "uid": "github/anderslogg/geco",
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+        "description": "A collection of solvers for the Einstein-Vlasov equations",
         "topics": [
-            "single-cell",
-            "bioinformatics",
-            "atac"
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     {
-        "uid": "github/BobAubouin/Python_Anesthesia_Simulator",
-        "url": "https://github.com/BobAubouin/Python_Anesthesia_Simulator",
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-        "description": "Simulate the effect of drugs during total intrevenous anesthesia",
-        "topics": [
-            "anesthesia",
-            "simulation",
-            "drug-dosage"
-        ]
+        "uid": "github/auranic/ClinTrajan",
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+        "description": "Finding trajectories, bifurcations and quantifying pseudotime in large clinical datasets",
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     {
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-        "url": "https://github.com/nanoporetech/tombo",
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-        "description": "Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data. ",
-        "topics": [
-            "epigenetics"
-        ]
+        "uid": "github/PieterjanRobbe/GaussianRandomFields.jl",
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+        "avatar": "https://avatars.githubusercontent.com/u/15999604?v=4",
+        "description": "A package for Gaussian random field generation in Julia",
+        "topics": []
     },
     {
-        "uid": "github/nanoporetech/pychopper",
-        "url": "https://github.com/nanoporetech/pychopper",
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-        "avatar": "https://avatars.githubusercontent.com/u/7668184?v=4",
-        "description": "A tool to identify, orient, trim and rescue full length cDNA reads",
+        "uid": "github/pawni/BayesByHypernet",
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+        "description": "Code for the paper Implicit Weight Uncertainty in Neural Networks",
         "topics": [
-            "rna-seq",
-            "cdna",
-            "transcriptomics",
-            "nanopore",
-            "full-length"
+            "deep-learning",
+            "variational-inference",
+            "deep-neural-networks",
+            "tensorflow",
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         ]
     },
     {
-        "uid": "github/nanoporetech/qcat",
-        "url": "https://github.com/nanoporetech/qcat",
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-        "avatar": "https://avatars.githubusercontent.com/u/7668184?v=4",
-        "description": " qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.",
+        "uid": "github/cmateu/galstreams",
+        "url": "https://github.com/cmateu/galstreams",
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+        "description": "Milky Way Streams Footprint Library and Toolkit for Python",
         "topics": []
     },
     {
-        "uid": "github/nanoporetech/index.html#",
-        "url": null,
-        "rel": "/software/repository/github/nanoporetech/index.html#",
-        "avatar": "",
-        "description": "a suite of tools primarily for the identification of modified nucleotides from nanopore sequencing data.",
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+        "avatar": "https://avatars.githubusercontent.com/u/4968584?v=4",
+        "description": "Python toolkit for mGC3 method",
         "topics": []
     },
     {
-        "uid": "github/nanoporetech/megalodon",
-        "url": "https://github.com/nanoporetech/megalodon",
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-        "description": " Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.",
-        "topics": [
-            "basecalling",
-            "epigenetics",
-            "variant-calling",
-            "guppy"
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+        "url": "https://github.com/hope-data-science/tidyfst",
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+        "avatar": "https://avatars1.githubusercontent.com/u/32947502?v=4",
+        "description": "Tidy Verbs for Fast Data Manipulation",
+        "topics": []
     },
     {
-        "uid": "github/nanoporetech/dorado",
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-        "description": "Oxford Nanopore's Basecaller",
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-            "basecalling",
-            "libtorch",
-            "nanopore",
-            "genomics"
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+        "description": "A factor analysis package",
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     },
     {
-        "uid": "github/nanoporetech/pomoxis",
-        "url": "https://github.com/nanoporetech/pomoxis",
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-        "description": "Analysis components from Oxford Nanopore Research",
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+        "description": "Code to reproduce the figures (data not included)",
         "topics": []
     },
     {
-        "uid": "github/nanoporetech/pinfish",
-        "url": "https://github.com/nanoporetech/pinfish",
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-        "description": "Tools to annotate genomes using long read transcriptomics data",
+        "uid": "github/radifar/PyPLIF-HIPPOS",
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+        "description": "HIPPOS Is PyPLIF On Steroids. A Molecular Interaction Fingerprinting Tool for Docking Results of Autodock Vina and PLANTS",
         "topics": [
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-            "cdna",
-            "transcriptomics",
-            "genome-annotation",
-            "nanopore"
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         ]
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     {
-        "uid": "github/nanoporetech/medaka",
-        "url": "https://github.com/nanoporetech/medaka",
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-        "description": "Sequence correction provided by ONT Research",
+        "uid": "github/NickMilsonPhysics/BinaryStarSolver",
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+        "avatar": "https://avatars.githubusercontent.com/u/71746058?v=4",
+        "description": "BinaryStarSolver is a Python 3 program which solves for the orbital elements of binary stars, given radial velocity time series",
         "topics": [
-            "nanopore",
-            "medaka"
+            "astronomy",
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     {
-        "uid": "github/nanoporetech/ont_fast5_api",
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-        "description": "Flip-flop basecaller for Oxford Nanopore reads",
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+        "description": "Fortran code to generate artificial QSO spectra",
         "topics": []
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     {
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-        "description": "Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group",
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+        "description": "A modular JavaScript viewer for mass spectrometry data",
         "topics": []
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-        "description": "A Variant Call Format reader for Python.",
+        "uid": "github/SciML/DataInterpolations.jl",
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-        "description": "The Research Software Directory is a content management system that is tailored to software.",
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+        "description": "Benchmarking framework for Feature Selection and Feature Ranking algorithms \ud83d\ude80",
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-            "discoverability"
+            "benchmarks",
+            "feature-rankers",
+            "feature-selection",
+            "wandb",
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+        "description": "A simple library for parsing messages of Health Level 7 (HL7) version 2.x into Python objects.",
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+        "url": "https://github.com/plotly/dash",
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+        "avatar": "https://avatars2.githubusercontent.com/u/5997976?v=4",
+        "description": "Analytical Web Apps for Python, R, Julia, and Jupyter. No JavaScript Required.",
         "topics": [
-            "machine-learning",
-            "deep-learning",
-            "tensorflow",
-            "cosmology",
-            "bayesian-inference"
+            "dash",
+            "plotly",
+            "data-visualization",
+            "data-science",
+            "gui-framework",
+            "flask",
+            "react",
+            "python",
+            "finance",
+            "bioinformatics",
+            "technical-computing",
+            "charting",
+            "plotly-dash",
+            "web-app",
+            "productivity",
+            "no-javascript",
+            "modeling",
+            "r",
+            "rstats",
+            "jupyter"
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-        "avatar": "https://avatars.githubusercontent.com/u/58025542?v=4",
-        "description": "Scrapers for extracting articles from major Finnish journalistic media outlets",
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+        "url": "https://github.com/jranalli/solarspatialtools",
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+        "avatar": "https://avatars.githubusercontent.com/u/7864460?v=4",
+        "description": "Library of tools used to support spatial analyses of solar energy",
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-        "description": "Beta release of chombo-discharge, a research code for low-temperature plasma which uses a Cartesian cut-cell formalism.",
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+        "description": "a bioinformatics tool that helps analyze RNA-seq data, providing base-to-base alignment BAM files, transcript abundance estimation, and fusion gene detection.",
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-        "description": "COVID-19 Hospital Impact Model for Epidemics",
-        "topics": []
+        "uid": "github/n8thangreen/BCEA",
+        "url": "https://github.com/n8thangreen/BCEA",
+        "rel": "/software/repository/github/n8thangreen/BCEA",
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+        "description": "Bayesian Cost Effectiveness Analysis. Given the results of a Bayesian model (possibly based on MCMC) in the form of simulations from the posterior distributions of suitable variables of costs and clinical benefits for two or more interventions, produces a health economic evaluation. Compares one of the interventions (the \"reference\") to the others (\"comparators\"). Produces many summary and plots to analyse the results",
+        "topics": [
+            "cost-effectiveness",
+            "bayesian"
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-        "uid": "github/sandialabs/pvOps",
-        "url": "https://github.com/sandialabs/pvOps",
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-        "description": "A set of documented functions for supporting operations research of photovoltaic energy systems. ",
+        "uid": "github/evanoconnor/GR1D",
+        "url": "https://github.com/evanoconnor/GR1D",
+        "rel": "/software/repository/github/evanoconnor/GR1D",
+        "avatar": "https://avatars.githubusercontent.com/u/1109332?v=4",
+        "description": "General Relativistic, Spherically Symmetry, Neutrino Transport Code for Stellar Collapse",
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-        "uid": "github/reizio/reiz.io",
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-        "description": "Structural Source Code Search Engine",
+        "uid": "github/cas-bioinf/rboAnalyzer",
+        "url": "https://github.com/cas-bioinf/rboAnalyzer",
+        "rel": "/software/repository/github/cas-bioinf/rboAnalyzer",
+        "avatar": "https://avatars1.githubusercontent.com/u/25302416?v=4",
+        "description": "Tool for analysing BLAST output for ncRNA sequences",
         "topics": [
-            "source",
-            "source-code",
-            "search-engine",
-            "python-ast",
-            "ast-matcher"
+            "rna",
+            "rna-structure-prediction",
+            "blast",
+            "blast-search"
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-        "url": "https://github.com/ablab/spades",
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-        "description": "SPAdes Genome Assembler",
+        "uid": "github/sibirrer/psfr",
+        "url": "https://github.com/sibirrer/psfr",
+        "rel": "/software/repository/github/sibirrer/psfr",
+        "avatar": "https://avatars.githubusercontent.com/u/6814174?v=4",
+        "description": "Point Spread Function reconstruction",
         "topics": [
-            "genome-assembly",
-            "sequence-assembler",
-            "sequencing",
-            "transcriptome-assembly",
-            "illumina",
-            "metagenome-assembly",
-            "next-generation-sequencing"
+            "astronomy",
+            "psf-estimation",
+            "lenstronomy"
         ]
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-        "uid": "github/ablab/nerpa",
-        "url": "https://github.com/ablab/nerpa",
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-        "description": null,
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+        "uid": "github/sibirrer/hierArc",
+        "url": "https://github.com/sibirrer/hierArc",
+        "rel": "/software/repository/github/sibirrer/hierArc",
+        "avatar": "https://avatars.githubusercontent.com/u/6814174?v=4",
+        "description": "Hierarchical inference of cosmological parameters from a set of strong lensing systems",
+        "topics": [
+            "lenstronomy",
+            "cosmology"
+        ]
     },
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-        "uid": "github/ablab/TandemTools",
-        "url": "https://github.com/ablab/TandemTools",
-        "rel": "/software/repository/github/ablab/TandemTools",
-        "avatar": "https://avatars.githubusercontent.com/u/988606?v=4",
-        "description": "Tool for assessing/improving assembly quality in extra-long tandem repeats",
-        "topics": []
+        "uid": "github/sibirrer/lenstronomy",
+        "url": "https://github.com/sibirrer/lenstronomy",
+        "rel": "/software/repository/github/sibirrer/lenstronomy",
+        "avatar": "https://avatars.githubusercontent.com/u/6814174?v=4",
+        "description": "multi-purpose lens modeling software package",
+        "topics": [
+            "gravitational-lensing",
+            "image-simulation",
+            "lenstronomy",
+            "astropy-affiliated",
+            "cosmology",
+            "astronomy",
+            "galaxies",
+            "galaxy-morphology",
+            "strong-lensing",
+            "astrophysics"
+        ]
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-        "uid": "github/justyncw/STAR_MELT",
-        "url": "https://github.com/justyncw/STAR_MELT",
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-        "description": "Repository for the STAR-MELT emission line analysis Jupyter notebook and Python package",
-        "topics": []
+        "uid": "github/spack/spack",
+        "url": "https://github.com/spack/spack",
+        "rel": "/software/repository/github/spack/spack",
+        "avatar": "https://avatars2.githubusercontent.com/u/25539161?v=4",
+        "description": "A flexible package manager that supports multiple versions, configurations, platforms, and compilers.",
+        "topics": [
+            "python",
+            "spack",
+            "package-manager",
+            "hpc",
+            "build-tools",
+            "radiuss",
+            "macos",
+            "scientific-computing",
+            "linux"
+        ]
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-        "uid": "github/sidchaini/DistClassiPy",
-        "url": "https://github.com/sidchaini/DistClassiPy",
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-        "description": "A python package for a distance-based classifier which can use several different distance metrics.",
+        "uid": "github/MIC-DKFZ/HD-BET",
+        "url": "https://github.com/MIC-DKFZ/HD-BET",
+        "rel": "/software/repository/github/MIC-DKFZ/HD-BET",
+        "avatar": "https://avatars.githubusercontent.com/u/31731892?v=4",
+        "description": "MRI brain extraction tool",
         "topics": []
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-        "url": "https://github.com/rrwick/Unicycler",
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-        "description": "hybrid assembly pipeline for bacterial genomes",
+        "uid": "github/MIC-DKFZ/TractSeg",
+        "url": "https://github.com/MIC-DKFZ/TractSeg",
+        "rel": "/software/repository/github/MIC-DKFZ/TractSeg",
+        "avatar": "https://avatars.githubusercontent.com/u/31731892?v=4",
+        "description": "Automatic White Matter Bundle Segmentation",
         "topics": []
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-        "uid": "github/rrwick/Filtlong",
-        "url": "https://github.com/rrwick/Filtlong",
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-        "description": "quality filtering tool for long reads",
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+        "uid": "github/chanzuckerberg/idseq-dag",
+        "url": "https://github.com/chanzuckerberg/czid-dag",
+        "rel": "/software/repository/github/chanzuckerberg/idseq-dag",
+        "avatar": "https://avatars.githubusercontent.com/u/19917299?v=4",
+        "description": "Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.",
+        "topics": [
+            "genomics",
+            "infectious-diseases",
+            "idseq"
+        ]
     },
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-        "uid": "github/rrwick/Deepbinner",
-        "url": "https://github.com/rrwick/Deepbinner",
-        "rel": "/software/repository/github/rrwick/Deepbinner",
-        "avatar": "https://avatars.githubusercontent.com/u/7053555?v=4",
-        "description": "a signal-level demultiplexer for Oxford Nanopore reads",
-        "topics": []
+        "uid": "github/chanzuckerberg/shasta",
+        "url": "https://github.com/chanzuckerberg/shasta",
+        "rel": "/software/repository/github/chanzuckerberg/shasta",
+        "avatar": "https://avatars.githubusercontent.com/u/19917299?v=4",
+        "description": "De novo assembly from Oxford Nanopore reads.",
+        "topics": [
+            "dna",
+            "sequencing",
+            "assembly",
+            "nanopore",
+            "pacbio",
+            "long-read",
+            "de-novo"
+        ]
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-        "uid": "github/rrwick/Bandage",
-        "url": "https://github.com/rrwick/Bandage",
-        "rel": "/software/repository/github/rrwick/Bandage",
-        "avatar": "https://avatars.githubusercontent.com/u/7053555?v=4",
-        "description": "a Bioinformatics Application for Navigating De novo Assembly Graphs Easily",
-        "topics": []
+        "uid": "github/chanzuckerberg/cellxgene",
+        "url": "https://github.com/chanzuckerberg/cellxgene",
+        "rel": "/software/repository/github/chanzuckerberg/cellxgene",
+        "avatar": "https://avatars.githubusercontent.com/u/19917299?v=4",
+        "description": "an interactive explorer for single-cell transcriptomics data",
+        "topics": [
+            "scientific",
+            "visualization",
+            "scrna-seq",
+            "transcriptomics",
+            "dataviz"
+        ]
     },
     {
-        "uid": "github/rrwick/Porechop",
-        "url": "https://github.com/rrwick/Porechop",
-        "rel": "/software/repository/github/rrwick/Porechop",
-        "avatar": "https://avatars.githubusercontent.com/u/7053555?v=4",
-        "description": "adapter trimmer for Oxford Nanopore reads",
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+        "uid": "github/palumbom/grass",
+        "url": "https://github.com/palumbom/GRASS",
+        "rel": "/software/repository/github/palumbom/grass",
+        "avatar": "https://avatars.githubusercontent.com/u/19910419?v=4",
+        "description": "A testbed for stellar granulation in exoplanet RV searches. ",
+        "topics": [
+            "exoplanets",
+            "radial-velocities",
+            "granulation",
+            "stellar-variability",
+            "astronomy-software"
+        ]
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-        "uid": "github/Exo-TiC/ExoTiC-LD",
-        "url": "https://github.com/Exo-TiC/ExoTiC-LD",
-        "rel": "/software/repository/github/Exo-TiC/ExoTiC-LD",
-        "avatar": "https://avatars.githubusercontent.com/u/98596129?v=4",
-        "description": "Limb-darkening package to calculate the coefficients for specific instruments, stars, and wavelength ranges",
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+        "uid": "github/lmfit/lmfit-py",
+        "url": "https://github.com/lmfit/lmfit-py",
+        "rel": "/software/repository/github/lmfit/lmfit-py",
+        "avatar": "https://avatars.githubusercontent.com/u/6190878?v=4",
+        "description": "Non-Linear Least Squares Minimization, with flexible Parameter settings, based on scipy.optimize, and with many additional classes and methods for curve fitting. ",
+        "topics": [
+            "python",
+            "scipy",
+            "curve-fitting",
+            "least-squares"
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-        "description": "Deep learning protein-protein binding sites prediction",
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+        "description": "Conditional Reciprocal Best Blast",
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-        "description": "Differentiable Likelihood for CMB Analysis",
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+            "billiards",
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+            "snooker",
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+            "wavelength-solution",
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-        "description": "PV Simulation using SAM and Python",
+        "uid": "github/meinardmueller/libfmp",
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-        "description": "Tools for Integrated-light Spectroscopy with Python3",
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-            "covid",
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+        "description": "Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA",
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         "topics": [
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-            "iris",
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         "topics": []
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-        "description": "SpotLinkTest",
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+        "description": "A tool for fast and accurate summarizing of variant calling format (VCF) files",
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+            "scrna-seq",
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-        "description": "A model to predict Total ELectricity Loads (TELL)",
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-        "description": "NATURF: Neighborhood Adaptive Tissues for Urban Resilience Futures",
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+        "description": "Population-based Forward-time Simulator for the Outbreak of COVID-19",
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-            "standards",
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-        "description": "Lightweight Python implementation of Normative Modelling",
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+        "description": "A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data",
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-            "opencl",
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-            "suitesparse",
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+        "description": "PyChelator performs metal chelator calculations taking into account pH, temperature, and ionic strength",
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-        "description": "Efficient Codes for the LArge scales of the unIveRSe",
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+        "description": "Code to calculate the sensitivity of a ground-based instrument for astronomy at mid-infrared wavelengths (3-15 micron). Written for the METIS instrument for the E-ELT but easily customisable.",
         "topics": []
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-        "avatar": "https://avatars.githubusercontent.com/u/24206439?v=4",
-        "description": "Python for heliospheric and planetary physics",
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+        "description": "Code to calculate correlation functions for two (astrophysical) catalogue datasets",
+        "topics": []
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+        "description": "Parallelized rotation and flipping INvariant Kohonen maps",
         "topics": [
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-            "python",
-            "physics"
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-        "description": "A Faraday synthesis application that performs 3D CLEAN deconvolution of multi-frequency, polarized radio interferometric data following Bell & En\u00dflin (2012).",
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+        "avatar": "https://avatars.githubusercontent.com/u/34956055?v=4",
+        "description": "A modern software library for simulating radiation transport.",
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-        "avatar": "https://avatars.githubusercontent.com/u/904248?v=4",
-        "description": "Pairwise Sequence Alignment Library",
-        "topics": []
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+        "url": "https://github.com/Magritte-code/pomme",
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+        "avatar": "https://avatars.githubusercontent.com/u/34956055?v=4",
+        "description": "Bayesian model reconstruction based on astronomical spectral line observations.",
+        "topics": [
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+            "astronomy-astrophysics",
+            "astronomy-software",
+            "interferometry",
+            "spectral-lines",
+            "inverse-problem"
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     },
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-        "avatar": "https://avatars.githubusercontent.com/u/904248?v=4",
-        "description": "Python bindings for the parasail C library.",
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+        "rel": "/software/repository/github/automl/amltk",
+        "avatar": "https://avatars.githubusercontent.com/u/6469053?v=4",
+        "description": "A build-it-yourself AutoML Framework",
         "topics": []
     },
     {
-        "uid": "github/Hoohm/CITE-seq-Count",
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-        "avatar": "https://avatars.githubusercontent.com/u/1267560?v=4",
-        "description": "A tool that allows to get UMI counts from a single cell protein assay",
+        "uid": "github/pyro-ppl/pyro",
+        "url": "https://github.com/pyro-ppl/pyro",
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+        "avatar": "https://avatars.githubusercontent.com/u/46794900?v=4",
+        "description": "Deep universal probabilistic programming with Python and PyTorch",
         "topics": [
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-            "citeseq",
-            "10x",
-            "dropseq"
+            "python",
+            "pytorch",
+            "machine-learning",
+            "bayesian",
+            "probabilistic-programming",
+            "bayesian-inference",
+            "variational-inference",
+            "probabilistic-modeling",
+            "deep-learning"
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-        "description": "ORIGIN: detectiOn and extRactIon of Galaxy emIssion liNes",
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+        "avatar": "https://avatars3.githubusercontent.com/u/717666?v=4",
+        "description": "Statsmodels: statistical modeling and econometrics in Python",
         "topics": [
             "python",
-            "astronomy",
-            "astrophysics",
-            "source-detection",
-            "musevlt"
+            "statistics",
+            "econometrics",
+            "data-analysis",
+            "generalized-linear-models",
+            "timeseries-analysis",
+            "regression-models"
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     },
     {
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-        "description": "MUSE-PSFR - PSF reconstruction for MUSE WFM-AO",
+        "uid": "github/PaulHancock/Aegean",
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+        "description": "The Aegean source finding program and associated tools",
         "topics": [
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+            "source-finding",
             "python",
-            "astronomy",
-            "astrophysics",
-            "musevlt",
-            "adaptive-optics"
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-            "data-driven-model",
-            "computational-modelling",
-            "simulation",
-            "object-oriented-programming",
-            "python"
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+        "uid": "github/PaulHancock/Robbie",
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+        "rel": "/software/repository/github/PaulHancock/Robbie",
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+        "description": "Robbie: A batch processing work-flow for the detection of radio transients and variables",
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-        "description": "Principal Component Analysis All in One",
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+        "description": ":construction_worker: Fasten toolkit, for streaming operations on fastq files",
         "topics": [
             "bioinformatics",
-            "population-genetics",
-            "pca",
-            "svd",
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-            "ukb"
+            "fastq-files",
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-        "description": "library for nonlinear optimization, wrapping many algorithms for global and local, constrained or unconstrained, optimization",
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+        "description": ":feet: QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run",
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-        "description": "Store of the trained model for pangolin to access.",
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+        "description": "FERRE matches physical models to measurements",
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     {
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-        "description": "Software package for assigning SARS-CoV-2 genome sequences to global lineages.",
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+        "description": "Plotting functions for the Event Horizon Telescope",
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-        "description": "Python tools for spatial trajectory and time-series data analysis",
+        "uid": "github/ptriska/WavesDash",
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+        "rel": "/software/repository/github/ptriska/WavesDash",
+        "avatar": "https://avatars.githubusercontent.com/u/45852775?v=4",
+        "description": "A web application for visualization of wastewater sequencing results",
+        "topics": []
+    },
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+        "description": "One-dimensional unsteady compressible reacting flow simulation framework, designed for simple prototyping and testing of novel reduced-order model methods.",
         "topics": [
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+        "description": "An R package for calculating and analyzing food demand and in accordance with the Edmonds et al food demand model",
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+            "food-security",
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+        "description": "Mapping software with pre-loaded global and local maps",
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-            "mmcif",
-            "pdb-files",
-            "protein-structure"
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+        "rel": "/software/repository/github/JGCRI/osiris",
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+        "description": "Processes climate impacts on agricultural yields for GCAM",
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-        "uid": "github/PDB-REDO/density-fitness",
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-        "description": "Application to calculate the density statistics (RSR, SRSR, RSCCS, EDIAm and OPIA)  for x-ray structures",
+        "uid": "github/JGCRI/stitches",
+        "url": "https://github.com/JGCRI/stitches",
+        "rel": "/software/repository/github/JGCRI/stitches",
+        "avatar": "https://avatars.githubusercontent.com/u/8431983?v=4",
+        "description": "Amalgamate existing climate data to create monthly climate variable fields.",
         "topics": []
     },
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-        "uid": "github/PDB-REDO/dssp",
-        "url": "https://github.com/PDB-REDO/dssp",
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-            "pdb",
-            "proteins"
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-        "avatar": "https://avatars.githubusercontent.com/u/71706409?v=4",
-        "description": "Application to calculate ramachandran z-scores",
+        "uid": "github/GOMC-WSU/MoSDeF-dihedral-fit",
+        "url": "https://github.com/GOMC-WSU/MoSDeF-dihedral-fit",
+        "rel": "/software/repository/github/GOMC-WSU/MoSDeF-dihedral-fit",
+        "avatar": "https://avatars.githubusercontent.com/u/11666264?v=4",
+        "description": "MoSDeF-dihedral-fit: A simple software package to fit dihedrals via the MoSDeF software",
         "topics": []
     },
     {
-        "uid": "github/cblearn/cblearn",
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-        "avatar": "https://avatars.githubusercontent.com/u/132082914?v=4",
-        "description": "Comparison-based Machine Learning in Python",
+        "uid": "github/GOMC-WSU/GOMC",
+        "url": "https://github.com/GOMC-WSU/GOMC",
+        "rel": "/software/repository/github/GOMC-WSU/GOMC",
+        "avatar": "https://avatars.githubusercontent.com/u/11666264?v=4",
+        "description": "GOMC - GPU Optimized Monte Carlo is a parallel molecular simulation code designed for high-performance simulation of large systems",
         "topics": [
-            "ordinal",
-            "embedding",
-            "machine-learning",
-            "machinelearning",
-            "scikit-learn",
-            "non-metric",
-            "scaling",
-            "multidimensional-scaling",
-            "multidimensional"
+            "monte-carlo",
+            "monte-carlo-simulation",
+            "gpu",
+            "openmp",
+            "adsorption",
+            "free-energy",
+            "phase-equilibrium",
+            "surface-tension",
+            "cuda",
+            "gibbs-ensemble",
+            "grand-canonical-monte-carlo"
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-        "uid": "github/bayzidlab/SAINT-Angle",
-        "url": "https://github.com/bayzidlab/SAINT-Angle",
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-        "description": "C library for high-throughput sequencing data formats",
+        "uid": "github/yupidevs/pactus",
+        "url": "https://github.com/yupidevs/pactus",
+        "rel": "/software/repository/github/yupidevs/pactus",
+        "avatar": "https://avatars.githubusercontent.com/u/79972700?v=4",
+        "description": "Framework to evaluate Trajectory Classification Algorithms",
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-            "bioinformatics",
-            "sam",
-            "bam",
-            "cram",
-            "vcf",
-            "bcf",
-            "ngs"
+            "classification",
+            "classification-models",
+            "evaluation-framework",
+            "trajectory",
+            "trajectory-analysis",
+            "transformers",
+            "python"
         ]
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-        "url": "https://github.com/samtools/bcftools",
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-        "description": "A Java API for high-throughput sequencing data (HTS) formats.",
+        "uid": "github/dpryan79/pyBigWig",
+        "url": "https://github.com/deeptools/pyBigWig",
+        "rel": "/software/repository/github/dpryan79/pyBigWig",
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+        "description": "A python extension for quick access to bigWig and bigBed files",
         "topics": [
-            "genomics",
-            "sequencing",
-            "dna",
-            "ngs",
-            "bam",
-            "cram",
-            "sam",
-            "fasta",
-            "vcf",
-            "java-api",
-            "java"
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+            "bioinfomatics",
+            "bigbed"
         ]
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-        "uid": "github/samtools/samtools",
-        "url": "https://github.com/samtools/samtools",
-        "rel": "/software/repository/github/samtools/samtools",
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-        "topics": []
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-        "description": "KCWI data reduction pipeline. Developers: Don Neill, Matt Matuszewski, Chris Martin (Caltech)",
+        "uid": "github/dpryan79/libBigWig",
+        "url": "https://github.com/dpryan79/libBigWig",
+        "rel": "/software/repository/github/dpryan79/libBigWig",
+        "avatar": "https://avatars.githubusercontent.com/u/6399000?v=4",
+        "description": "A C library for handling bigWig files",
         "topics": [
-            "kcwi",
-            "keck",
-            "drp",
-            "idl"
+            "bigbed",
+            "bigwig",
+            "bioinformatics"
         ]
     },
     {
-        "uid": "github/Keck-DataReductionPipelines/KCWI_DRP",
-        "url": "https://github.com/Keck-DataReductionPipelines/KCWI_DRP",
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-        "avatar": "https://avatars.githubusercontent.com/u/9344298?v=4",
-        "description": "KCWI python DRP",
+        "uid": "github/dpryan79/MethylDackel",
+        "url": "https://github.com/dpryan79/MethylDackel",
+        "rel": "/software/repository/github/dpryan79/MethylDackel",
+        "avatar": "https://avatars.githubusercontent.com/u/6399000?v=4",
+        "description": "A (mostly) universal methylation extractor for BS-seq experiments.",
         "topics": [
-            "keck",
-            "kcwi",
-            "drp",
-            "python"
+            "methylation",
+            "bioinformatics",
+            "methylation-extraction",
+            "bisulfite"
         ]
     },
     {
-        "uid": "github/cnsetzer/kilopop",
-        "url": "https://github.com/cnsetzer/kilopop",
-        "rel": "/software/repository/github/cnsetzer/kilopop",
-        "avatar": "https://avatars.githubusercontent.com/u/32570203?v=4",
-        "description": "Binary neutron star (BNS) population of optical kilonovae (kNe).",
-        "topics": []
+        "uid": "github/maserlib/ExPRES",
+        "url": "https://github.com/maserlib/ExPRES",
+        "rel": "/software/repository/github/maserlib/ExPRES",
+        "avatar": "https://avatars.githubusercontent.com/u/22966577?v=4",
+        "description": "Exoplanetary and Planetary Radio Emission Simulator",
+        "topics": [
+            "uws",
+            "idl",
+            "radio-astronomy",
+            "jupiter",
+            "padc"
+        ]
     },
     {
-        "uid": "github/taranu/AllStarFit",
-        "url": "https://github.com/taranu/AllStarFit",
-        "rel": "/software/repository/github/taranu/AllStarFit",
-        "avatar": "https://avatars.githubusercontent.com/u/10129954?v=4",
-        "description": "Experimental R package for source detection, PSF and multi-component galaxy fitting",
+        "uid": "github/kimpenn/VERSE",
+        "url": "https://github.com/kimpenn/VERSE",
+        "rel": "/software/repository/github/kimpenn/VERSE",
+        "avatar": "https://avatars.githubusercontent.com/u/66026549?v=4",
+        "description": "A versatile and efficient RNA-Seq read counting tool",
         "topics": []
     },
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-        "uid": "github/ronshnapp/MyPTV",
-        "url": "https://github.com/ronshnapp/MyPTV",
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-        "avatar": "https://avatars.githubusercontent.com/u/34024910?v=4",
-        "description": "MyPTV is an open source library designed for 3D particle Tracking (3D-PTV) measurements",
+        "uid": "github/snek5000/snek5000",
+        "url": "https://github.com/snek5000/snek5000",
+        "rel": "/software/repository/github/snek5000/snek5000",
+        "avatar": "https://avatars.githubusercontent.com/u/99480879?v=4",
+        "description": ":snake: Python framework for Nek5000 :rocket:",
         "topics": [
             "python",
-            "particle-tracking",
-            "fluid-mechanics",
-            "experiments",
-            "measurements",
-            "photogrammetry",
-            "turbulence",
-            "3d-ptv"
+            "nek5000",
+            "snek5000",
+            "fluidsim",
+            "snakemake",
+            "jinja2",
+            "fluiddyn",
+            "cfd",
+            "simulation",
+            "closember",
+            "workflow"
         ]
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-        "uid": "github/omboersma/deepglow",
-        "url": "https://github.com/OMBoersma/DeepGlow",
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-        "description": "A neural network emulator for BOXFIT",
-        "topics": []
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-        "avatar": "https://avatars.githubusercontent.com/u/46361271?v=4",
-        "description": "Distributed training framework for TensorFlow, Keras, PyTorch, and Apache MXNet.",
+        "uid": "github/segasai/rvspecfit",
+        "url": "https://github.com/segasai/rvspecfit",
+        "rel": "/software/repository/github/segasai/rvspecfit",
+        "avatar": "https://avatars.githubusercontent.com/u/109513?v=4",
+        "description": "Radial velocity and stellar parameter fitting code for large surveys",
         "topics": [
-            "tensorflow",
-            "uber",
-            "machine-learning",
-            "machinelearning",
-            "mpi",
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-            "deep-learning",
-            "deeplearning",
-            "keras",
-            "pytorch",
-            "mxnet",
-            "spark",
-            "ray"
+            "astrophysics",
+            "spectroscopy"
         ]
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-        "uid": "github/calboo/TAWAS",
-        "url": "https://github.com/calboo/TAWAS",
-        "rel": "/software/repository/github/calboo/TAWAS",
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-        "description": "TAWAS is an IDL script for solving the wave equation for torsional Alfv\u00e8n waves in a viscous plasma. The background magnetic field is axisymmetric and force-free with no azimuthal component and the plasma beta is assumed to be negligable. The solution is calculated using the analytical formula presented in https://academic.oup.com/mnras/article-abstract/510/2/1910/6449388?redirectedFrom=fulltext. ",
-        "topics": []
+        "uid": "github/segasai/q3c",
+        "url": "https://github.com/segasai/q3c",
+        "rel": "/software/repository/github/segasai/q3c",
+        "avatar": "https://avatars.githubusercontent.com/u/109513?v=4",
+        "description": "PostgreSQL extension for spatial indexing on a sphere",
+        "topics": [
+            "postgresql",
+            "sphere",
+            "astronomy",
+            "nearest-neighbors",
+            "query",
+            "coordinates"
+        ]
     },
     {
-        "uid": "github/calboo/Potential_Field_Calculator",
-        "url": "https://github.com/calboo/Potential_Field_Calculator",
-        "rel": "/software/repository/github/calboo/Potential_Field_Calculator",
-        "avatar": "https://avatars.githubusercontent.com/u/33519577?v=4",
-        "description": "A collection of codes for generating and visualising potential magnetic fields. If this numerical code is used, authors kindly request an acknowledgment via citation of paper https://www.aanda.org/articles/aa/full_html/2019/05/aa34684-18/aa34684-18.html",
+        "uid": "github/fenderglass/Flye",
+        "url": "https://github.com/fenderglass/Flye",
+        "rel": "/software/repository/github/fenderglass/Flye",
+        "avatar": "https://avatars.githubusercontent.com/u/2475380?v=4",
+        "description": "De novo assembler for single molecule sequencing reads using repeat graphs",
         "topics": []
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-        "uid": "github/calboo/wigglewave",
-        "url": "https://github.com/calboo/Wigglewave",
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-        "avatar": "https://avatars.githubusercontent.com/u/33519577?v=4",
-        "description": "Wigglewave is a FORTRAN code that uses an RK4 finite difference method to solve the linearised governing equations for Torsional Alfv\u00e9n Waves (TAWs) propagating in a plasma with negligible plasma beta and in a force-free axisymmetric magnetic field, with no azimuthal component, embedded in a high density divergent tube structure.",
+        "uid": "github/fenderglass/Ragout",
+        "url": "https://github.com/fenderglass/Ragout",
+        "rel": "/software/repository/github/fenderglass/Ragout",
+        "avatar": "https://avatars.githubusercontent.com/u/2475380?v=4",
+        "description": "Chromosome-level scaffolding using multiple references",
         "topics": []
     },
     {
-        "uid": "github/LeandroOrdonez/explora-vr-dash-client",
-        "url": "https://github.com/LeandroOrdonez/explora-vr-dash-client",
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-        "avatar": "https://avatars.githubusercontent.com/u/4668102?v=4",
-        "description": null,
+        "uid": "github/dondi/GRNsight",
+        "url": "https://github.com/dondi/GRNsight",
+        "rel": "/software/repository/github/dondi/GRNsight",
+        "avatar": "https://avatars.githubusercontent.com/u/382242?v=4",
+        "description": "Web app and service for modeling and visualizing gene regulatory networks.",
         "topics": []
     },
     {
-        "uid": "github/lantunes/cellpylib",
-        "url": "https://github.com/lantunes/cellpylib",
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-        "avatar": "https://avatars.githubusercontent.com/u/788494?v=4",
-        "description": "A library for working with Cellular Automata, for Python.",
+        "uid": "github/mscaudill/openseize",
+        "url": "https://github.com/mscaudill/openseize",
+        "rel": "/software/repository/github/mscaudill/openseize",
+        "avatar": "https://avatars.githubusercontent.com/u/12617099?v=4",
+        "description": "Digital Signal Processing for Big EEGs",
         "topics": [
-            "cellular-automata",
-            "complexity",
-            "complex-systems",
-            "nonlinear-dynamics",
-            "computation"
+            "big-data",
+            "eeg",
+            "seizure",
+            "signal-processing"
         ]
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     {
-        "uid": "github/eelregit/pmwd",
-        "url": "https://github.com/eelregit/pmwd",
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-        "description": "Differentiable Cosmological Forward Model",
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-            "forward-model",
-            "simulation",
-            "differentiable",
-            "jax",
-            "n-body",
-            "nbody-simulation"
-        ]
+        "uid": "github/RainthunderWYL/LoRD",
+        "url": "https://github.com/RainthunderWYL/LoRD",
+        "rel": "/software/repository/github/RainthunderWYL/LoRD",
+        "avatar": "https://avatars.githubusercontent.com/u/30300990?v=4",
+        "description": "Locate Reconnection Distribution",
+        "topics": []
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-        "url": "https://github.com/eelregit/mcfit",
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-        "avatar": "https://avatars.githubusercontent.com/u/7311098?v=4",
-        "description": "multiplicatively convolutional fast integral transforms",
+        "uid": "github/cogent3/cogent3",
+        "url": "https://github.com/cogent3/cogent3",
+        "rel": "/software/repository/github/cogent3/cogent3",
+        "avatar": "https://avatars.githubusercontent.com/u/55074560?v=4",
+        "description": "Comparative Genomics Toolkit 3",
         "topics": [
-            "fftlog",
-            "integral-transform",
-            "numerical-integration",
-            "cosmology"
+            "bioinformatics",
+            "pycogent",
+            "statistics",
+            "data-science",
+            "biology",
+            "genomics",
+            "evolution",
+            "biopython",
+            "markov-chain",
+            "molecular-evolution",
+            "non-stationary",
+            "phylogenetic-trees",
+            "phylogenetics",
+            "python",
+            "parallel",
+            "signal-processing",
+            "maximum-likelihood",
+            "biological-sequence-analysis",
+            "sequence-alignment"
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-        "description": "Disconnected covariance of 2-point functions in large-scale structure of the Universe",
+        "uid": "github/phac-nml/biohansel",
+        "url": "https://github.com/phac-nml/biohansel",
+        "rel": "/software/repository/github/phac-nml/biohansel",
+        "avatar": "https://avatars.githubusercontent.com/u/15620262?v=4",
+        "description": "subtype microbial whole-genome sequencing (WGS) data using SNV targeting k-mer subtyping schemes.",
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-        "description": "TARDIS - Temperature And Radiative Diffusion In Supernovae",
+        "uid": "github/phac-nml/mob-suite",
+        "url": "https://github.com/phac-nml/mob-suite",
+        "rel": "/software/repository/github/phac-nml/mob-suite",
+        "avatar": "https://avatars.githubusercontent.com/u/15620262?v=4",
+        "description": "MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies",
         "topics": [
-            "science",
-            "astrophysics",
-            "python",
-            "supernova",
-            "radiative-transfer"
+            "plasmids",
+            "typing",
+            "clustering",
+            "assemblies"
+        ]
+    },
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         "topics": [
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-        "description": "A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.",
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         "topics": [
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-            "pixelgen-technologies",
-            "protein",
-            "proteomics",
-            "single-cell",
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-            "spatial"
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-        "description": "Analyze YSOVAR lightcurves",
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-        "avatar": "https://avatars.githubusercontent.com/u/7524938?v=4",
-        "description": "R package to extract muscle synergies from electromyogram",
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         "topics": [
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-        "description": "Cross-platform network communication software",
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             "python",
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+        "description": "A Python automated geometric generation tool that generates 3D meshes of prismatic cellular solids with radial growth rules based on Voronoi diagrams.",
+        "topics": []
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         "topics": [
-            "machine-learning",
-            "julia",
-            "pipelines",
-            "tuning",
-            "data-science",
-            "tuning-parameters",
-            "predictive-modeling",
-            "classification",
-            "regression",
-            "statistics",
-            "clustering",
-            "stacking",
-            "ensemble-learning",
-            "pipeline"
+            "virtual-screening",
+            "computational-biology",
+            "molecular-docking",
+            "distributed-computing",
+            "ray"
         ]
     },
     {
-        "uid": "github/alan-turing-institute/Palaeoanalytics",
-        "url": "https://github.com/alan-turing-institute/Palaeoanalytics",
-        "rel": "/software/repository/github/alan-turing-institute/Palaeoanalytics",
-        "avatar": "https://avatars.githubusercontent.com/u/18304793?v=4",
-        "description": "Repository for the Paleoanalytics project.",
+        "uid": "github/FabianPlum/OmniTrax",
+        "url": "https://github.com/FabianPlum/OmniTrax",
+        "rel": "/software/repository/github/FabianPlum/OmniTrax",
+        "avatar": "https://avatars.githubusercontent.com/u/26245490?v=4",
+        "description": "Deep learning-driven multi animal tracking and pose estimation add-on for Blender",
         "topics": [
-            "hut23",
-            "hut23-530"
+            "blender",
+            "deeplabcut",
+            "deeplearning",
+            "object-detection",
+            "tracking",
+            "yolo"
         ]
     },
     {
-        "uid": "github/vembrane/vembrane",
-        "url": "https://github.com/vembrane/vembrane",
-        "rel": "/software/repository/github/vembrane/vembrane",
-        "avatar": "https://avatars.githubusercontent.com/u/68063743?v=4",
-        "description": "vembrane filters VCF records using python expressions",
+        "uid": "github/jorgensd/adios4dolfinx",
+        "url": "https://github.com/jorgensd/adios4dolfinx",
+        "rel": "/software/repository/github/jorgensd/adios4dolfinx",
+        "avatar": "https://avatars.githubusercontent.com/u/8554300?v=4",
+        "description": "Extending DOLFINx with checkpointing functionality",
         "topics": [
-            "bioinformatics",
-            "filter",
-            "filter-expression",
-            "vcf",
-            "vcf-filtering"
+            "adios2",
+            "fenicsx",
+            "checkpointing",
+            "mpi-applications"
         ]
     },
     {
-        "uid": "github/EnsembleGovServices/kamodo-core",
-        "url": "https://github.com/EnsembleGovServices/kamodo-core",
-        "rel": "/software/repository/github/EnsembleGovServices/kamodo-core",
-        "avatar": "https://avatars.githubusercontent.com/u/73653894?v=4",
-        "description": "A functional API for space weather models and data",
+        "uid": "github/fpavogt/fcmaker",
+        "url": "https://github.com/fpavogt/fcmaker",
+        "rel": "/software/repository/github/fpavogt/fcmaker",
+        "avatar": "https://avatars.githubusercontent.com/u/13974615?v=4",
+        "description": "An automated finding-chart-making program for Observing Blocks on p2.",
         "topics": []
     },
     {
-        "uid": "github/pmkruyen/dearscholar",
-        "url": "https://github.com/pmkruyen/dearscholar",
-        "rel": "/software/repository/github/pmkruyen/dearscholar",
-        "avatar": "https://avatars1.githubusercontent.com/u/20207147?v=4",
-        "description": "DearScholar: An open-source smartphone app for longitudinal scientific qualitative and quantitative (self-report) diary, log and survey research",
+        "uid": "github/fpavogt/E0102-VR",
+        "url": "https://github.com/fpavogt/E0102-VR",
+        "rel": "/software/repository/github/fpavogt/E0102-VR",
+        "avatar": "https://avatars.githubusercontent.com/u/13974615?v=4",
+        "description": "An experimental VR application to visualize the 3D map of the oxygen-bright ejecta in SNR 1E 0102.2-7219",
         "topics": []
     },
     {
-        "uid": "github/spacetx/starfish",
-        "url": "https://github.com/spacetx/starfish",
-        "rel": "/software/repository/github/spacetx/starfish",
-        "avatar": "https://avatars.githubusercontent.com/u/37218549?v=4",
-        "description": "starfish: unified pipelines for image-based transcriptomics",
+        "uid": "github/xianggebenben/GraphSL",
+        "url": "https://github.com/xianggebenben/GraphSL",
+        "rel": "/software/repository/github/xianggebenben/GraphSL",
+        "avatar": "https://avatars.githubusercontent.com/u/13185300?v=4",
+        "description": "Graph Source Localization Library",
         "topics": [
-            "transcriptomics",
-            "imaging",
-            "human-cell-atlas",
-            "python"
+            "source-localization",
+            "inverse-problems"
         ]
     },
     {
-        "uid": "github/PyTables/PyTables",
-        "url": "https://github.com/PyTables/PyTables",
-        "rel": "/software/repository/github/PyTables/PyTables",
-        "avatar": "https://avatars1.githubusercontent.com/u/828302?v=4",
-        "description": "A Python package to manage extremely large amounts of data",
+        "uid": "github/pratheesh3780/grapesAgri1",
+        "url": "https://github.com/pratheesh3780/grapesAgri1",
+        "rel": "/software/repository/github/pratheesh3780/grapesAgri1",
+        "avatar": "https://avatars.githubusercontent.com/u/67531873?v=4",
+        "description": "Collection of shiny apps for Agricultural research Data Analysis. Allows user to have graphical user interface to perform analysis of Agricultural experimental data. On using the functions in this package a Graphical User Interface will pop up. Apps Works by simple upload of files in CSV format.",
         "topics": []
     },
     {
-        "uid": "github/liamedeiros/ehtplot",
-        "url": "https://github.com/liamedeiros/ehtplot",
-        "rel": "/software/repository/github/liamedeiros/ehtplot",
-        "avatar": "https://avatars.githubusercontent.com/u/20053280?v=4",
-        "description": "Plotting functions for the Event Horizon Telescope",
+        "uid": "github/isovic/graphmap",
+        "url": "https://github.com/isovic/graphmap",
+        "rel": "/software/repository/github/isovic/graphmap",
+        "avatar": "https://avatars.githubusercontent.com/u/1976877?v=4",
+        "description": "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:",
         "topics": []
     },
     {
-        "uid": "github/dtcc-platform/dtcc-builder",
-        "url": "https://github.com/dtcc-platform/dtcc-builder",
-        "rel": "/software/repository/github/dtcc-platform/dtcc-builder",
-        "avatar": "https://avatars.githubusercontent.com/u/125552939?v=4",
-        "description": null,
+        "uid": "github/me-manu/gammaALPs",
+        "url": "https://github.com/me-manu/gammaALPs",
+        "rel": "/software/repository/github/me-manu/gammaALPs",
+        "avatar": "https://avatars.githubusercontent.com/u/1806684?v=4",
+        "description": "A python code to calculate the conversion probability between photons and axions / axionlike particles",
         "topics": []
     },
     {
-        "uid": "github/napakalas/casbert",
-        "url": "https://github.com/napakalas/casbert",
-        "rel": "/software/repository/github/napakalas/casbert",
-        "avatar": "https://avatars.githubusercontent.com/u/3060947?v=4",
+        "uid": "github/orbisgis/lczexplore",
+        "url": "https://github.com/orbisgis/lczexplore",
+        "rel": "/software/repository/github/orbisgis/lczexplore",
+        "avatar": "https://avatars.githubusercontent.com/u/9842346?v=4",
         "description": null,
-        "topics": []
+        "topics": [
+            "climate-change",
+            "environment",
+            "r-spatial",
+            "geoclimate"
+        ]
     },
     {
-        "uid": "github/amueller/word_cloud",
-        "url": "https://github.com/amueller/word_cloud",
-        "rel": "/software/repository/github/amueller/word_cloud",
-        "avatar": "https://avatars.githubusercontent.com/u/449558?v=4",
-        "description": "A little word cloud generator in Python",
+        "uid": "github/adithirgis/pollucheck",
+        "url": "https://github.com/adithirgis/pollucheck",
+        "rel": "/software/repository/github/adithirgis/pollucheck",
+        "avatar": "https://avatars.githubusercontent.com/u/63432077?v=4",
+        "description": "This application helps exploring the open source air quality data.",
         "topics": []
     },
     {
-        "uid": "github/dgerosa/spops",
-        "url": "https://github.com/dgerosa/spops",
-        "rel": "/software/repository/github/dgerosa/spops",
-        "avatar": "https://avatars.githubusercontent.com/u/7237041?v=4",
-        "description": "Spinning black-hole binary POPulation Synthesis",
+        "uid": "github/VBlesius/RHRT",
+        "url": "https://github.com/VBlesius/RHRT",
+        "rel": "/software/repository/github/VBlesius/RHRT",
+        "avatar": "https://avatars.githubusercontent.com/u/71442854?v=4",
+        "description": "R package to assess Heart Rate Turbulence from RR interval data",
         "topics": []
     },
     {
-        "uid": "github/dgerosa/surrkick",
-        "url": "https://github.com/dgerosa/surrkick",
-        "rel": "/software/repository/github/dgerosa/surrkick",
-        "avatar": "https://avatars.githubusercontent.com/u/7237041?v=4",
-        "description": "Black-hole kicks from numerical-relativity surrogate models",
-        "topics": []
+        "uid": "github/Qile0317/APackOfTheClones",
+        "url": "https://github.com/Qile0317/APackOfTheClones",
+        "rel": "/software/repository/github/Qile0317/APackOfTheClones",
+        "avatar": "https://avatars.githubusercontent.com/u/43093685?v=4",
+        "description": "Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.",
+        "topics": [
+            "clonal-analysis",
+            "single-cell",
+            "single-cell-genomics",
+            "r",
+            "seurat",
+            "immune-repertoire",
+            "immune-system",
+            "scrna-seq",
+            "scrnaseq"
+        ]
     },
     {
-        "uid": "github/dgerosa/gwdet",
-        "url": "https://github.com/dgerosa/gwdet",
-        "rel": "/software/repository/github/dgerosa/gwdet",
-        "avatar": "https://avatars.githubusercontent.com/u/7237041?v=4",
-        "description": "Detectability of gravitational-wave signals from compact binary coalescences",
+        "uid": "github/McMahonCosmologyGroup/holosim-ml",
+        "url": "https://github.com/McMahonCosmologyGroup/holosim-ml",
+        "rel": "/software/repository/github/McMahonCosmologyGroup/holosim-ml",
+        "avatar": "https://avatars.githubusercontent.com/u/83089765?v=4",
+        "description": "machine learning applied to the efficient analysis of radio holography measurements of complex optical systems",
         "topics": []
     },
     {
-        "uid": "github/s4hts/HTStream",
-        "url": "https://github.com/s4hts/HTStream",
-        "rel": "/software/repository/github/s4hts/HTStream",
-        "avatar": "https://avatars.githubusercontent.com/u/64926039?v=4",
-        "description": "A high throughput sequence read  toolset using a streaming approach facilitated by Linux pipes",
-        "topics": [
-            "bioinformatics",
-            "bioinformatics-tool",
-            "genomics",
-            "streaming",
-            "linux-pipes",
-            "sequence-analysis",
-            "next-generation-sequencing"
-        ]
+        "uid": "github/leirufeng/iEnhancer-DCSV",
+        "url": "https://github.com/leirufeng/iEnhancer-DCSV",
+        "rel": "/software/repository/github/leirufeng/iEnhancer-DCSV",
+        "avatar": "https://avatars.githubusercontent.com/u/65327942?v=4",
+        "description": null,
+        "topics": []
     },
     {
-        "uid": "github/jorgensd/adios4dolfinx",
-        "url": "https://github.com/jorgensd/adios4dolfinx",
-        "rel": "/software/repository/github/jorgensd/adios4dolfinx",
-        "avatar": "https://avatars.githubusercontent.com/u/8554300?v=4",
-        "description": "Extending DOLFINx with checkpointing functionality",
-        "topics": [
-            "adios2",
-            "fenicsx",
-            "checkpointing",
-            "mpi-applications"
-        ]
+        "uid": "github/AlexMikes/AutoFunc",
+        "url": "https://github.com/AlexMikes/AutoFunc",
+        "rel": "/software/repository/github/AlexMikes/AutoFunc",
+        "avatar": "https://avatars.githubusercontent.com/u/24322176?v=4",
+        "description": "Data Mining for Automated Functional Representations",
+        "topics": []
     },
     {
-        "uid": "github/votca/xtp",
-        "url": "https://github.com/votca/xtp",
-        "rel": "/software/repository/github/votca/xtp",
-        "avatar": "https://avatars0.githubusercontent.com/u/4510560?v=4",
-        "description": "GW-BSE for excited state Quantum Chemistry in a Gaussian Orbital basis, electronic spectroscopy with QM/MM, charge and energy dynamics in complex molecular systems",
+        "uid": "github/grimme-lab/xtb",
+        "url": "https://github.com/grimme-lab/xtb",
+        "rel": "/software/repository/github/grimme-lab/xtb",
+        "avatar": "https://avatars.githubusercontent.com/u/49521176?v=4",
+        "description": "Semiempirical Extended Tight-Binding Program Package",
         "topics": [
             "quantum-chemistry",
-            "gw-bse",
-            "quantum-classical",
-            "excited-states",
-            "multiscale-simulation",
-            "computational-physics",
-            "computational-chemistry"
+            "tight-binding",
+            "computational-chemistry",
+            "atomistic-simulations",
+            "force-field"
         ]
     },
     {
-        "uid": "github/laristra/flecsph",
-        "url": "https://github.com/laristra/flecsph",
-        "rel": "/software/repository/github/laristra/flecsph",
-        "avatar": "https://avatars.githubusercontent.com/u/24596390?v=4",
-        "description": "A Parallel and Distributed SPH Implementation Based on the FleCSI",
-        "topics": []
+        "uid": "github/MichielsenM/FOAM",
+        "url": "https://github.com/MichielsenM/FOAM",
+        "rel": "/software/repository/github/MichielsenM/FOAM",
+        "avatar": "https://avatars.githubusercontent.com/u/33225623?v=4",
+        "description": "A Python package for forward asteroseismic modelling of gravity modes",
+        "topics": [
+            "asteroseismology",
+            "astronomy",
+            "python",
+            "astrophysics"
+        ]
     },
     {
-        "uid": "github/mwanakijiji/rrlfe",
-        "url": "https://github.com/mwanakijiji/rrlfe",
-        "rel": "/software/repository/github/mwanakijiji/rrlfe",
-        "avatar": "https://avatars.githubusercontent.com/u/11987227?v=4",
-        "description": null,
+        "uid": "github/mkenworthy/exorings",
+        "url": "https://github.com/mkenworthy/exorings",
+        "rel": "/software/repository/github/mkenworthy/exorings",
+        "avatar": "https://avatars.githubusercontent.com/u/1846189?v=4",
+        "description": "Tools for fitting and displaying giant extrasolar planet ring systems.",
         "topics": []
     },
     {
-        "uid": "github/Cadaei-Yuvxvs/OSHy-X",
-        "url": "https://github.com/Cadaei-Yuvxvs/OSHy-X",
-        "rel": "/software/repository/github/Cadaei-Yuvxvs/OSHy-X",
-        "avatar": "https://avatars.githubusercontent.com/u/56923643?v=4",
-        "description": "Open Source Hypothalamic Atlas and Segmentation for 3T and 7T",
+        "uid": "github/brandon-rhodes/python-jplephem",
+        "url": "https://github.com/brandon-rhodes/python-jplephem",
+        "rel": "/software/repository/github/brandon-rhodes/python-jplephem",
+        "avatar": "https://avatars.githubusercontent.com/u/166162?v=4",
+        "description": "Python version of NASA DE4xx ephemerides, the basis for the Astronomical Alamanac",
         "topics": []
     },
     {
-        "uid": "github/astropy/astroplan",
-        "url": "https://github.com/astropy/astroplan",
-        "rel": "/software/repository/github/astropy/astroplan",
-        "avatar": "https://avatars.githubusercontent.com/u/847984?v=4",
-        "description": "Observation planning package for astronomers",
+        "uid": "github/johannesulf/dsigma",
+        "url": "https://github.com/johannesulf/dsigma",
+        "rel": "/software/repository/github/johannesulf/dsigma",
+        "avatar": "https://avatars.githubusercontent.com/u/4167911?v=4",
+        "description": "A Galaxy-Galaxy Lensing Python Package",
         "topics": []
     },
     {
-        "uid": "github/astropy/specutils",
-        "url": "https://github.com/astropy/specutils",
-        "rel": "/software/repository/github/astropy/specutils",
-        "avatar": "https://avatars.githubusercontent.com/u/847984?v=4",
-        "description": "An Astropy coordinated package for astronomical spectroscopy.  Maintainers: @nmearl @rosteen @keflavich @eteq",
+        "uid": "github/ericfell/rfbzero",
+        "url": "https://github.com/ericfell/rfbzero",
+        "rel": "/software/repository/github/ericfell/rfbzero",
+        "avatar": "https://avatars.githubusercontent.com/u/39314565?v=4",
+        "description": "Redox flow battery electrochemical cycling models in Python",
         "topics": [
-            "astropy"
+            "batteries",
+            "battery-models",
+            "microkinetics",
+            "python",
+            "simulation",
+            "rfbzero"
         ]
     },
     {
-        "uid": "github/astropy/ccdproc",
-        "url": "https://github.com/astropy/ccdproc",
-        "rel": "/software/repository/github/astropy/ccdproc",
-        "avatar": "https://avatars.githubusercontent.com/u/847984?v=4",
-        "description": "Astropy affiliated package for reducing optical/IR CCD data",
+        "uid": "github/ArenA-Crowds/Crowds",
+        "url": "https://github.com/ArenA-Crowds/Crowds",
+        "rel": "/software/repository/github/ArenA-Crowds/Crowds",
+        "avatar": "https://avatars1.githubusercontent.com/u/27482561?v=4",
+        "description": "Jupyter python notebooks related to the ArenA project",
+        "topics": []
+    },
+    {
+        "uid": "github/casaluca/bolometric-corrections",
+        "url": "https://github.com/casaluca/bolometric-corrections",
+        "rel": "/software/repository/github/casaluca/bolometric-corrections",
+        "avatar": "https://avatars.githubusercontent.com/u/35479737?v=4",
+        "description": "compute bolometric corrections and synthetic colours for input values of stellar parameters",
         "topics": [
-            "python",
-            "astropy-affiliated",
-            "ccd",
-            "astronomy"
+            "stars",
+            "isochrones",
+            "photometry",
+            "colours",
+            "bolometric-corrections",
+            "synthetic-colours",
+            "astronomy",
+            "astrophysics"
         ]
     },
     {
-        "uid": "github/astropy/astroquery",
-        "url": "https://github.com/astropy/astroquery",
-        "rel": "/software/repository/github/astropy/astroquery",
-        "avatar": "https://avatars.githubusercontent.com/u/847984?v=4",
-        "description": "Functions and classes to access online data resources. Maintainers: @keflavich and @bsipocz and @ceb8",
+        "uid": "github/KALMUS-Color-Toolkit/KALMUS",
+        "url": "https://github.com/KALMUS-Color-Toolkit/KALMUS",
+        "rel": "/software/repository/github/KALMUS-Color-Toolkit/KALMUS",
+        "avatar": "https://avatars.githubusercontent.com/u/77697488?v=4",
+        "description": "KALMUS Color Toolkit for color analysis and visualization in film studies.",
         "topics": [
-            "astropy",
-            "python",
-            "astropy-affiliated",
-            "astronomy",
-            "hacktoberfest",
-            "closember"
+            "image-analysis",
+            "video-processing",
+            "digital-humanities",
+            "python3",
+            "pypi-package"
         ]
     },
     {
-        "uid": "github/astropy/SPISEA",
-        "url": "https://github.com/astropy/SPISEA",
-        "rel": "/software/repository/github/astropy/SPISEA",
-        "avatar": "https://avatars.githubusercontent.com/u/847984?v=4",
-        "description": "Stellar Population Synthesis Modeling",
+        "uid": "github/OBrink/RanDepict",
+        "url": "https://github.com/OBrink/RanDepict",
+        "rel": "/software/repository/github/OBrink/RanDepict",
+        "avatar": "https://avatars.githubusercontent.com/u/59618901?v=4",
+        "description": "This repository contains RanDepict, an easy-to-use utility to generate a big variety of chemical structure depictions (random depiction styles and image augmentations) based on RDKit, CDK, Indigo and PIKAChU.",
         "topics": []
     },
     {
-        "uid": "github/astropy/halotools",
-        "url": "https://github.com/astropy/halotools",
-        "rel": "/software/repository/github/astropy/halotools",
-        "avatar": "https://avatars.githubusercontent.com/u/847984?v=4",
-        "description": "Python package for studying large scale structure, cosmology, and galaxy evolution using N-body simulations and halo models",
+        "uid": "gitlab/sybreton/apollinaire",
+        "url": "https://gitlab.com/sybreton/apollinaire",
+        "rel": "/software/repository/gitlab/sybreton/apollinaire",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/17312517/apollinaire_logo_2.png",
+        "description": "Python tools for helio- and asteroseismic peakbagging frameworks.",
         "topics": []
     },
     {
-        "uid": "github/astropy/astroscrappy",
-        "url": "https://github.com/astropy/astroscrappy",
-        "rel": "/software/repository/github/astropy/astroscrappy",
-        "avatar": "https://avatars.githubusercontent.com/u/847984?v=4",
-        "description": "Speedy Cosmic Ray Annihilation Package in Python",
+        "uid": "gitlab/robizzard/libcdict",
+        "url": "https://gitlab.com/rob.izzard/libcdict",
+        "rel": "/software/repository/gitlab/robizzard/libcdict",
+        "avatar": "https://gitlab.comNone",
+        "description": "A generic associative array, also know as dictionary or hash, library in C, based on uthash and extended to be more user friendly and include integration features such as JSON output.",
         "topics": []
     },
     {
-        "uid": "github/astropy/astropy",
-        "url": "https://github.com/astropy/astropy",
-        "rel": "/software/repository/github/astropy/astropy",
-        "avatar": "https://avatars0.githubusercontent.com/u/847984?v=4",
-        "description": "Repository for the Astropy core package",
+        "uid": "gitlab/jesseds/apav",
+        "url": "https://gitlab.com/jesseds/apav",
+        "rel": "/software/repository/gitlab/jesseds/apav",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/10414782/g39334.png",
+        "description": "APAV (Atom Probe Analysis and Visualization) is a Python library for the analysis and\r\nvisualization of atom probe tomography experiments.",
         "topics": [
-            "python",
-            "astronomy",
-            "science"
+            "Atom Probe",
+            "Field Evaporation",
+            "data analysis",
+            "science",
+            "tomography"
         ]
     },
     {
-        "uid": "github/statdivlab/rigr",
-        "url": "https://github.com/statdivlab/rigr",
-        "rel": "/software/repository/github/statdivlab/rigr",
-        "avatar": "https://avatars.githubusercontent.com/u/42418432?v=4",
-        "description": "Regression, Inference, and General Data Analysis Tools for R ",
+        "uid": "gitlab/chiemotono/mdcontactcom",
+        "url": "https://gitlab.com/chiemotono/mdcontactcom",
+        "rel": "/software/repository/gitlab/chiemotono/mdcontactcom",
+        "avatar": "https://gitlab.comNone",
+        "description": "",
         "topics": []
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-        "uid": "github/wiederm/transformato",
-        "url": "https://github.com/wiederm/transformato",
-        "rel": "/software/repository/github/wiederm/transformato",
-        "avatar": "https://avatars.githubusercontent.com/u/31651017?v=4",
-        "description": "Set up relative free energy calculations using a common scaffold",
+        "uid": "gitlab/vibes-developers/vibes",
+        "url": "https://gitlab.com/vibes-developers/vibes",
+        "rel": "/software/repository/gitlab/vibes-developers/vibes",
+        "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/19053725/FV_green.png",
+        "description": "[FHI-vibes](https://vibes-developers.gitlab.io/vibes/): Vibrational simulations with python powered by ASE and FHI-aims.",
+        "topics": []
+    },
+    {
+        "uid": "gitlab/gpagano/lensinggw",
+        "url": "https://gitlab.com/gpagano/lensinggw",
+        "rel": "/software/repository/gitlab/gpagano/lensinggw",
+        "avatar": "https://gitlab.comNone",
+        "description": null,
         "topics": [
-            "charmm-gui",
-            "free-energy-calculations"
+            "lensing of gravitational waves"
         ]
     },
     {
-        "uid": "github/neherlab/nextalign",
-        "url": "https://github.com/neherlab/nextalign",
-        "rel": "/software/repository/github/neherlab/nextalign",
-        "avatar": "https://avatars.githubusercontent.com/u/8996580?v=4",
-        "description": "\ud83e\uddec Viral genome reference alignment",
+        "uid": "gitlab/vda-lab/snowflake",
+        "url": "https://gitlab.com/vda-lab/snowflake",
+        "rel": "/software/repository/gitlab/vda-lab/snowflake",
+        "avatar": "https://gitlab.comNone",
+        "description": null,
         "topics": []
     },
     {
-        "uid": "github/mildpiggy/DEP2",
-        "url": "https://github.com/mildpiggy/DEP2",
-        "rel": "/software/repository/github/mildpiggy/DEP2",
-        "avatar": "https://avatars.githubusercontent.com/u/37103678?v=4",
-        "description": "An r package for proteomics data Analysis, developed from DEP.",
+        "uid": "gitlab/mcfrith/paraclu",
+        "url": "https://gitlab.com/mcfrith/paraclu",
+        "rel": "/software/repository/gitlab/mcfrith/paraclu",
+        "avatar": "https://gitlab.comNone",
+        "description": "Parametric clustering of genomic and transcriptomic features",
         "topics": []
     },
     {
-        "uid": "github/gtonkinhill/fastbaps",
-        "url": "https://github.com/gtonkinhill/fastbaps",
-        "rel": "/software/repository/github/gtonkinhill/fastbaps",
-        "avatar": "https://avatars.githubusercontent.com/u/10625107?v=4",
-        "description": "A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data",
-        "topics": [
-            "bayesian",
-            "hierarchical-clustering",
-            "genetics"
-        ]
+        "uid": "gitlab/mcfrith/last",
+        "url": "https://gitlab.com/mcfrith/last",
+        "rel": "/software/repository/gitlab/mcfrith/last",
+        "avatar": "https://gitlab.comNone",
+        "description": "finds & aligns related regions of sequences. LAST is designed for moderately large data (e.g. genomes, DNA reads, proteomes).",
+        "topics": []
     },
     {
-        "uid": "github/mostanes/umbrella2",
-        "url": "https://github.com/mostanes/umbrella2",
-        "rel": "/software/repository/github/mostanes/umbrella2",
-        "avatar": "https://avatars.githubusercontent.com/u/26716644?v=4",
-        "description": "Highly modular open-source asteroid detection library written under dotnet.",
+        "uid": "gitlab/mcfrith/tantan",
+        "url": "https://gitlab.com/mcfrith/tantan",
+        "rel": "/software/repository/gitlab/mcfrith/tantan",
+        "avatar": "https://gitlab.comNone",
+        "description": "low complexity and tandem repeat masker for biosequences",
         "topics": []
     },
     {
-        "uid": "github/pcubillos/rate",
-        "url": "https://github.com/pcubillos/rate",
-        "rel": "/software/repository/github/pcubillos/rate",
-        "avatar": "https://avatars.githubusercontent.com/u/2119263?v=4",
-        "description": "Reliable Analytic Thermochemical Equilibrium",
+        "uid": "gitlab/mcfrith/lamassemble",
+        "url": "https://gitlab.com/mcfrith/lamassemble",
+        "rel": "/software/repository/gitlab/mcfrith/lamassemble",
+        "avatar": "https://gitlab.comNone",
+        "description": "Merges overlapping \"long\" DNA reads into a consensus sequences",
         "topics": []
     },
     {
-        "uid": "github/pcubillos/repack",
-        "url": "https://github.com/pcubillos/repack",
-        "rel": "/software/repository/github/pcubillos/repack",
-        "avatar": "https://avatars.githubusercontent.com/u/2119263?v=4",
-        "description": "Repack and compress line-transition data",
+        "uid": "gitlab/programgreg/tagginglatencyestimator",
+        "url": "https://gitlab.com/programgreg/tagginglatencyestimator",
+        "rel": "/software/repository/gitlab/programgreg/tagginglatencyestimator",
+        "avatar": "https://gitlab.comNone",
+        "description": "Software to estimate the latency of the tagging process.",
+        "topics": []
+    },
+    {
+        "uid": "gitlab/clairedavies/sedbys",
+        "url": "https://gitlab.com/clairedavies/sedbys",
+        "rel": "/software/repository/gitlab/clairedavies/sedbys",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/19428398/sedbys_logo.jpg",
+        "description": "A python-based spectral energy distribution builder for young stars",
+        "topics": []
+    },
+    {
+        "uid": "gitlab/pipe3d/pyPipe3D",
+        "url": "https://gitlab.com/pipe3d/pyPipe3D",
+        "rel": "/software/repository/gitlab/pipe3d/pyPipe3D",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/26080505/pyPipe3D_colorido_avatar.png",
+        "description": "pyPipe3D is a spectroscopy analysis pipeline which produces coherent, easy to distribute and compare, parameters of the stellar populations and the ionized gas, suited in particular for data from the most recent optical IFS surveys.",
         "topics": [
-            "radiative-transfer",
-            "exoplanets",
+            "ifs",
+            "ionized gas",
+            "ism",
             "spectroscopy",
-            "hitran",
-            "exomol"
+            "stellar population synthesis",
+            "techniques"
         ]
     },
     {
-        "uid": "github/pcubillos/pyratbay",
-        "url": "https://github.com/pcubillos/pyratbay",
-        "rel": "/software/repository/github/pcubillos/pyratbay",
-        "avatar": "https://avatars.githubusercontent.com/u/2119263?v=4",
-        "description": "Python Radiative Transfer in a Bayesian Framework",
+        "uid": "gitlab/gims-developers/gims",
+        "url": "https://gitlab.com/gims-developers/gims",
+        "rel": "/software/repository/gitlab/gims-developers/gims",
+        "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/16358286/GIMSLogo.png",
+        "description": "GIMS -- Graphical Interface for Materials Simulations --  is an open-source, browser-based toolbox for electronic structure codes. Try it here: [gims.ms1p.org](https://gims.ms1p.org)",
         "topics": []
     },
     {
-        "uid": "github/pcubillos/mc3",
-        "url": "https://github.com/pcubillos/mc3",
-        "rel": "/software/repository/github/pcubillos/mc3",
-        "avatar": "https://avatars.githubusercontent.com/u/2119263?v=4",
-        "description": "Python MCMC Sampler",
+        "uid": "gitlab/ostrokach/proteinsolver",
+        "url": "https://gitlab.com/ostrokach/proteinsolver",
+        "rel": "/software/repository/gitlab/ostrokach/proteinsolver",
+        "avatar": "https://gitlab.comNone",
+        "description": "Graph neural network capable of generating novel amino acid sequences that fold into proteins with predetermined topologies.\r\n\r\n",
         "topics": [
-            "mcmc",
+            "protein design",
             "python"
         ]
     },
     {
-        "uid": "github/signalling-games-org/evoke",
-        "url": "https://github.com/signalling-games-org/evoke",
-        "rel": "/software/repository/github/signalling-games-org/evoke",
-        "avatar": "https://avatars.githubusercontent.com/u/124157910?v=4",
-        "description": "A Python package for evolutionary signalling games",
+        "uid": "gitlab/metafundev/metafun",
+        "url": "https://gitlab.com/metafundev/metafun",
+        "rel": "/software/repository/gitlab/metafundev/metafun",
+        "avatar": "https://gitlab.comNone",
+        "description": "",
         "topics": []
     },
     {
-        "uid": "github/Eventdisplay/Eventdisplay",
-        "url": "https://github.com/Eventdisplay/Eventdisplay",
-        "rel": "/software/repository/github/Eventdisplay/Eventdisplay",
-        "avatar": "https://avatars.githubusercontent.com/u/50499294?v=4",
-        "description": "A reconstruction and analysis pipeline for ground-based imaging atmospheric Cherenkov Telescopes",
+        "uid": "gitlab/qc-devs/aqcnes",
+        "url": "https://gitlab.com/qc-devs/aqcnes",
+        "rel": "/software/repository/gitlab/qc-devs/aqcnes",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/60711361/ThermalExpansion_Subdomain.png",
+        "description": "Mirror of https://gitlab.ethz.ch/mechanics-and-materials/aqcnes/",
         "topics": []
     },
     {
-        "uid": "github/NKI-AI/direct",
-        "url": "https://github.com/NKI-AI/direct",
-        "rel": "/software/repository/github/NKI-AI/direct",
-        "avatar": "https://avatars.githubusercontent.com/u/44191196?v=4",
-        "description": "Deep learning framework for MRI reconstruction",
-        "topics": [
-            "pytorch",
-            "deep-learning",
-            "mri-reconstruction",
-            "inverse-problems",
-            "medical-imaging",
-            "fastmri-challenge"
-        ]
+        "uid": "gitlab/jerrytheo16/exoplanet",
+        "url": "https://gitlab.com/jerrytheo16/exoplanet",
+        "rel": "/software/repository/gitlab/jerrytheo16/exoplanet",
+        "avatar": "https://gitlab.comNone",
+        "description": "Desktop-based application to aid in constructing a machine learning model for predictive analysis. The application further allows the model to be evaluated through statistical results and interactive graphs.",
+        "topics": []
     },
     {
-        "uid": "github/cran/irtplay",
-        "url": "https://github.com/cran/irtplay",
-        "rel": "/software/repository/github/cran/irtplay",
-        "avatar": "https://avatars.githubusercontent.com/u/6899542?v=4",
-        "description": ":exclamation:\u00a0This\u00a0is\u00a0a\u00a0read-only\u00a0mirror\u00a0of\u00a0the\u00a0CRAN\u00a0R\u00a0package\u00a0repository.  irtplay\u00a0\u2014\u00a0Unidimensional\u00a0Item\u00a0Response\u00a0Theory\u00a0Modeling.\u00a0Homepage:\u00a0https://github.com/hwangQ/irtplay  Report\u00a0bugs\u00a0for\u00a0this\u00a0package:\u00a0https://github.com/hwangQ/irtplay/issues",
+        "uid": "gitlab/eduardo-vitral/balrogo",
+        "url": "https://gitlab.com/eduardo-vitral/balrogo",
+        "rel": "/software/repository/gitlab/eduardo-vitral/balrogo",
+        "avatar": "https://gitlab.com/eduardo-vitral/balrogo/-/avatar",
+        "description": "Bayesian Astrometric Likelihood Recovery of Galactic Objects",
         "topics": []
     },
     {
-        "uid": "github/agshumate/LiftoffTools",
-        "url": "https://github.com/agshumate/LiftoffTools",
-        "rel": "/software/repository/github/agshumate/LiftoffTools",
-        "avatar": "https://avatars.githubusercontent.com/u/29218752?v=4",
-        "description": "is a toolkit to compare genes lifted between genome assemblies.",
+        "uid": "gitlab/cosapp/cosapp",
+        "url": "https://gitlab.com/cosapp/cosapp",
+        "rel": "/software/repository/gitlab/cosapp/cosapp",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/19967329/cosapp_web.png",
+        "description": "CoSApp core package",
         "topics": []
     },
     {
-        "uid": "github/mchalela/GriSPy",
-        "url": "https://github.com/mchalela/GriSPy",
-        "rel": "/software/repository/github/mchalela/GriSPy",
-        "avatar": "https://avatars.githubusercontent.com/u/26146886?v=4",
-        "description": "GriSPy is a regular grid search algorithm for quick nearest-neighbor lookup.",
+        "uid": "gitlab/cosmograil/PyCS3",
+        "url": "https://gitlab.com/cosmograil/PyCS3",
+        "rel": "/software/repository/gitlab/cosmograil/PyCS3",
+        "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/7888463/cover_image_1.png",
+        "description": "PyCS for python 3",
         "topics": []
     },
     {
-        "uid": "github/flekschas/regl-scatterplot",
-        "url": "https://github.com/flekschas/regl-scatterplot",
-        "rel": "/software/repository/github/flekschas/regl-scatterplot",
-        "avatar": "https://avatars.githubusercontent.com/u/932103?v=4",
-        "description": "Scalable WebGL-based scatter plot library build with Regl",
+        "uid": "gitlab/cosmograil/starred",
+        "url": "https://gitlab.com/cosmograil/starred",
+        "rel": "/software/repository/gitlab/cosmograil/starred",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/38194257/starred_main_image.png",
+        "description": "A two-channel deconvolution method with Starlet regularization",
         "topics": [
-            "scatterplot",
-            "visualization",
-            "2d",
-            "webgl",
-            "regl",
-            "scatter-plot"
+            "Deconvolution",
+            "astronomy",
+            "psf",
+            "python"
         ]
     },
     {
-        "uid": "github/flekschas/jupyter-scatter",
-        "url": "https://github.com/flekschas/jupyter-scatter",
-        "rel": "/software/repository/github/flekschas/jupyter-scatter",
-        "avatar": "https://avatars.githubusercontent.com/u/932103?v=4",
-        "description": "Interactive 2D scatter plot widget for Jupyter Lab and Notebook. Scales to millions of points!",
+        "uid": "gitlab/etienne.behar/menura",
+        "url": "https://gitlab.com/etienne.behar/menura",
+        "rel": "/software/repository/gitlab/etienne.behar/menura",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/24686946/menura_logo2_thumb.png",
+        "description": "Menura is a space plasma simulation code. It is built around a hybrid Particle In Cell (PIC) solver, running on Graphics Processing Units. More informations on https://menura.readthedocs.io",
         "topics": [
-            "scatter-plot",
-            "visualization",
-            "jupyterlab-extension",
-            "jupyter-notebook-extension"
+            "plasma",
+            "simulation",
+            "solar wind",
+            "turbulence"
         ]
     },
     {
-        "uid": "github/debian-tex/texlive-nonbin",
-        "url": "https://github.com/debian-tex/texlive-nonbin",
-        "rel": "/software/repository/github/debian-tex/texlive-nonbin",
-        "avatar": "https://avatars.githubusercontent.com/u/46477164?v=4",
-        "description": "debian non-bin texlive pkgs",
+        "uid": "gitlab/sigcorr/sigcorr",
+        "url": "https://gitlab.com/sigcorr/sigcorr",
+        "rel": "/software/repository/gitlab/sigcorr/sigcorr",
+        "avatar": "https://gitlab.comNone",
+        "description": null,
         "topics": []
     },
     {
-        "uid": "github/debian-tex/biber",
-        "url": "https://github.com/debian-tex/biber",
-        "rel": "/software/repository/github/debian-tex/biber",
-        "avatar": "https://avatars.githubusercontent.com/u/46477164?v=4",
-        "description": "Much-augmented BibTeX replacement for BibLaTeX users",
+        "uid": "gitlab/aroffringa/wsclean",
+        "url": "https://gitlab.com/aroffringa/wsclean",
+        "rel": "/software/repository/gitlab/aroffringa/wsclean",
+        "avatar": "https://gitlab.comNone",
+        "description": "WSClean (w-stacking clean) is a fast generic widefield imager. It implements several gridding algorithms and offers fully-automated multi-scale multi-frequency deconvolution. Manual: https://wsclean.readthedocs.io/",
         "topics": []
     },
     {
-        "uid": "github/samconnolly/DELightcurveSimulation",
-        "url": "https://github.com/samconnolly/DELightcurveSimulation",
-        "rel": "/software/repository/github/samconnolly/DELightcurveSimulation",
-        "avatar": "https://avatars.githubusercontent.com/u/5765263?v=4",
-        "description": "Emmanoulopoulos style lightcurve simulation",
+        "uid": "gitlab/aroffringa/aoflagger",
+        "url": "https://gitlab.com/aroffringa/aoflagger",
+        "rel": "/software/repository/gitlab/aroffringa/aoflagger",
+        "avatar": "https://gitlab.comNone",
+        "description": "The AOFlagger is a tool that can find and remove radio-frequency interference (RFI) in radio astronomical observations. It can make use of Lua scripts to make flagging strategies flexible, and the tools are applicable to a wide set of telescopes.",
         "topics": []
     },
     {
-        "uid": "github/Siegel-Lab/BioSmoother",
-        "url": "https://github.com/Siegel-Lab/BioSmoother",
-        "rel": "/software/repository/github/Siegel-Lab/BioSmoother",
-        "avatar": "https://avatars.githubusercontent.com/u/124569893?v=4",
-        "description": "On-the-fly processing and visualization of interactome data",
+        "uid": "gitlab/gmamon/MAMPOSSt",
+        "url": "https://gitlab.com/gmamon/MAMPOSSt",
+        "rel": "/software/repository/gitlab/gmamon/MAMPOSSt",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/6066861/MAMPOSSt_logo.png",
+        "description": null,
         "topics": [
-            "bioinformatics",
-            "data-visualization",
-            "hi-c",
-            "interactome-sequencing",
-            "radicl-seq",
-            "grid-seq"
+            "Mass/orbit modeling"
         ]
     },
     {
-        "uid": "github/HEML/HEML",
-        "url": "https://github.com/HEML/HEML",
-        "rel": "/software/repository/github/HEML/HEML",
-        "avatar": "https://avatars2.githubusercontent.com/u/15981568?v=4",
-        "description": "Open Source v1 for the Hyper-Elastic Mass Links (HEML) software",
+        "uid": "gitlab/habermann_lab/phasik",
+        "url": "https://gitlab.com/habermann_lab/phasik",
+        "rel": "/software/repository/gitlab/habermann_lab/phasik",
+        "avatar": "https://gitlab.comNone",
+        "description": "Scientific tools for extracting cyclic data via hierarchical clustering",
         "topics": []
     },
     {
-        "uid": "github/mtsch/Ripserer.jl",
-        "url": "https://github.com/mtsch/Ripserer.jl",
-        "rel": "/software/repository/github/mtsch/Ripserer.jl",
-        "avatar": "https://avatars0.githubusercontent.com/u/7646525?v=4",
-        "description": "Ripser and Ripserer",
-        "topics": [
-            "persistent-homology",
-            "topological-data-analysis",
-            "homology",
-            "cohomology",
-            "tda",
-            "ripser",
-            "julia",
-            "topology"
-        ]
-    },
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-        "url": "https://github.com/wbalmer/backtracks",
-        "rel": "/software/repository/github/wbalmer/backtracks",
-        "avatar": "https://avatars.githubusercontent.com/u/39763022?v=4",
-        "description": "Python package to fit relative astrometry with background star motion tracks. ",
+        "uid": "gitlab/aceteam.kaist/ACE-Molecule",
+        "url": "https://gitlab.com/aceteam.kaist/ACE-Molecule",
+        "rel": "/software/repository/gitlab/aceteam.kaist/ACE-Molecule",
+        "avatar": "https://gitlab.comNone",
+        "description": "GitLab repository for ACE-Molecule.",
         "topics": []
     },
     {
-        "uid": "github/wbalmer/backtrack",
-        "url": "https://github.com/wbalmer/backtrack",
-        "rel": "/software/repository/github/wbalmer/backtrack",
-        "avatar": "https://avatars.githubusercontent.com/u/39763022?v=4",
-        "description": "Python package to fit relative astrometry with background star motion tracks. ",
+        "uid": "gitlab/RKIBioinformaticsPipelines/QCumber",
+        "url": "https://gitlab.com/RKIBioinformaticsPipelines/QCumber",
+        "rel": "/software/repository/gitlab/RKIBioinformaticsPipelines/QCumber",
+        "avatar": "https://gitlab.comNone",
+        "description": "quality control of genomic sequences",
         "topics": []
     },
     {
-        "uid": "github/uab-cgds-worthey/quac",
-        "url": "https://github.com/uab-cgds-worthey/quac",
-        "rel": "/software/repository/github/uab-cgds-worthey/quac",
-        "avatar": "https://avatars.githubusercontent.com/u/110498780?v=4",
-        "description": "\ud83e\udd86 Quality Control of WGS and exome samples \ud83e\udd86",
-        "topics": [
-            "pipeline"
-        ]
-    },
-    {
-        "uid": "github/rorybarnes/EqTide",
-        "url": "https://github.com/RoryBarnes/EqTide",
-        "rel": "/software/repository/github/rorybarnes/EqTide",
-        "avatar": "https://avatars.githubusercontent.com/u/4413842?v=4",
-        "description": "Source code for Equilibrium Tide calculations",
+        "uid": "gitlab/jason-rumengan/pyarma",
+        "url": "https://gitlab.com/jason-rumengan/pyarma",
+        "rel": "/software/repository/gitlab/jason-rumengan/pyarma",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/22728285/pyarma_logo1.png",
+        "description": "PyArmadillo - linear algebra library for Python with MATLAB-like syntax - https://pyarma.sourceforge.io",
         "topics": [
-            "tides",
-            "orbits",
-            "planets",
-            "moons",
-            "exoplanets"
+            "BLAS",
+            "C++",
+            "LAPACK",
+            "Linear Algebra",
+            "MATLAB",
+            "Python",
+            "Scientifc Computing"
         ]
     },
     {
-        "uid": "github/sensein/etelemetry-client",
-        "url": "https://github.com/sensein/etelemetry-client",
-        "rel": "/software/repository/github/sensein/etelemetry-client",
-        "avatar": "https://avatars.githubusercontent.com/u/47326880?v=4",
-        "description": "Etelemetry client",
+        "uid": "gitlab/elsi_project/elsi_interface",
+        "url": "https://gitlab.com/elsi_project/elsi_interface",
+        "rel": "/software/repository/gitlab/elsi_project/elsi_interface",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/20804728/elsi_200629.png",
+        "description": "ELSI:  A software interface designed for electronic structure codes to connect with ELPA, libOMM, PEXSI, EigenExa, SLEPc, NTPoly, BSEPACK, LAPACK, MAGMA, and other solver libraries.",
         "topics": []
     },
     {
-        "uid": "github/virgesmith/neworder",
-        "url": "https://github.com/virgesmith/neworder",
-        "rel": "/software/repository/github/virgesmith/neworder",
-        "avatar": "https://avatars.githubusercontent.com/u/19323577?v=4",
-        "description": "A dynamic microsimulation framework for python",
-        "topics": [
-            "python3",
-            "microsimulation",
-            "monte-carlo",
-            "mpi",
-            "cplusplus-17",
-            "pybind11",
-            "numpy",
-            "pandas",
-            "markov-chain"
-        ]
-    },
-    {
-        "uid": "github/Bioinformatics-Munich/scas_dashboard",
-        "url": "https://github.com/Bioinformatics-Munich/scas_dashboard",
-        "rel": "/software/repository/github/Bioinformatics-Munich/scas_dashboard",
-        "avatar": "https://avatars.githubusercontent.com/u/116272517?v=4",
-        "description": "SCAS dashboard: A tool to intuitively and interactively analyze Slurm cluster usage",
+        "uid": "gitlab/german.tischler/biobambam2",
+        "url": "https://gitlab.com/german.tischler/biobambam2",
+        "rel": "/software/repository/gitlab/german.tischler/biobambam2",
+        "avatar": "https://gitlab.comNone",
+        "description": "Tools for early stage alignment file processing",
         "topics": []
     },
     {
-        "uid": "github/openneuropet/PET2BIDS",
-        "url": "https://github.com/openneuropet/PET2BIDS",
-        "rel": "/software/repository/github/openneuropet/PET2BIDS",
-        "avatar": "https://avatars.githubusercontent.com/u/81369350?v=4",
-        "description": "PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side files like .e.g excel sheets -- paper @JOSS  https://doi.org/10.21105/joss.06067",
-        "topics": [
-            "metadata",
-            "converter",
-            "json",
-            "bids"
-        ]
+        "uid": "gitlab/german.tischler/libmaus2",
+        "url": "https://gitlab.com/german.tischler/libmaus2",
+        "rel": "/software/repository/gitlab/german.tischler/libmaus2",
+        "avatar": "https://gitlab.comNone",
+        "description": "collection of data structures and algorithms",
+        "topics": []
     },
     {
-        "uid": "github/Pometry/Raphtory",
-        "url": "https://github.com/Pometry/Raphtory",
-        "rel": "/software/repository/github/Pometry/Raphtory",
-        "avatar": "https://avatars.githubusercontent.com/u/89028534?v=4",
-        "description": "Blazingly fast, vectorised, parallel, and scalable temporal graph engine for Rust, Python and JavaScript",
+        "uid": "gitlab/paulklemm_PHD/proteinortho",
+        "url": "https://gitlab.com/paulklemm_PHD/proteinortho",
+        "rel": "/software/repository/gitlab/paulklemm_PHD/proteinortho",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/7278443/icon4.png",
+        "description": "Proteinortho is a tool to detect orthologous genes within different species. [(Download)](https://gitlab.com/paulklemm_PHD/proteinortho/-/archive/master/proteinortho-master.tar.gz)",
         "topics": [
-            "graph",
-            "graph-algorithms",
-            "graph-analysis",
-            "graph-theory",
-            "graphviz",
-            "python",
-            "rust",
-            "temporal-networks",
-            "analytics",
-            "embeddable-database",
-            "graph-database",
-            "time-series"
+            "bioinformatics",
+            "orthology",
+            "orthology inference"
         ]
     },
     {
-        "uid": "github/ixkael/Delight",
-        "url": "https://github.com/ixkael/Delight",
-        "rel": "/software/repository/github/ixkael/Delight",
-        "avatar": "https://avatars.githubusercontent.com/u/229516?v=4",
-        "description": "Photometric redshift via Gaussian processes with physical kernels",
+        "uid": "gitlab/MartinBeseda/sa-oo-vqe-qiskit",
+        "url": "https://gitlab.com/MartinBeseda/sa-oo-vqe-qiskit",
+        "rel": "/software/repository/gitlab/MartinBeseda/sa-oo-vqe-qiskit",
+        "avatar": "https://gitlab.comNone",
+        "description": "Qiskit version of SA-OO-VQE",
         "topics": []
     },
     {
-        "uid": "github/ixkael/QuickSip",
-        "url": "https://github.com/ixkael/QuickSip",
-        "rel": "/software/repository/github/ixkael/QuickSip",
-        "avatar": "https://avatars.githubusercontent.com/u/229516?v=4",
-        "description": "Pipeline to quickly project Survey Image Properties (e.g. seeing, sky noise, airmass) onto the sky into Healpix maps using flexible weighting schemes. Initially designed to produce maps of observing condition related sources of systematics for the Dark Energy Survey, but will work with any multi-epoch survey and collection of images with valid WCS information.",
+        "uid": "gitlab/aegge/comet-emu",
+        "url": "https://gitlab.com/aegge/comet-emu",
+        "rel": "/software/repository/gitlab/aegge/comet-emu",
+        "avatar": "https://gitlab.comNone",
+        "description": null,
         "topics": []
     },
     {
-        "uid": "github/ixkael/3DEX",
-        "url": "https://github.com/ixkael/3DEX",
-        "rel": "/software/repository/github/ixkael/3DEX",
-        "avatar": "https://avatars.githubusercontent.com/u/229516?v=4",
-        "description": "3D expansions",
+        "uid": "gitlab/cracklet/cracklet",
+        "url": "https://gitlab.com/cracklet/cracklet",
+        "rel": "/software/repository/gitlab/cracklet/cracklet",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/25188173/logo_large.png",
+        "description": "cRacklet is a C++ boundary element library based on a spectral formulation of the elastodynamic wave equations in continuum solids.",
         "topics": []
     },
     {
-        "uid": "github/Pithikos/C-Thread-Pool",
-        "url": "https://github.com/Pithikos/C-Thread-Pool",
-        "rel": "/software/repository/github/Pithikos/C-Thread-Pool",
-        "avatar": "https://avatars.githubusercontent.com/u/400048?v=4",
-        "description": "A minimal but powerful thread pool in ANSI C",
-        "topics": []
+        "uid": "gitlab/materials-modeling/calorine",
+        "url": "https://gitlab.com/materials-modeling/calorine",
+        "rel": "/software/repository/gitlab/materials-modeling/calorine",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/26123426/salamander.png",
+        "description": "[A python tool box for GPUMD simulations](https://calorine.materialsmodeling.org/)",
+        "topics": [
+            "atomic scale simulation",
+            "condensed matter physics",
+            "force constants",
+            "gpumd",
+            "hiphive",
+            "machine learning potentials",
+            "molecular dynamics",
+            "neural network potentials",
+            "phonons",
+            "physics",
+            "python",
+            "thermal conductivity",
+            "thermal transport"
+        ]
     },
     {
-        "uid": "github/YenWenWang/HapDipKinship",
-        "url": "https://github.com/YenWenWang/HapDipKinship",
-        "rel": "/software/repository/github/YenWenWang/HapDipKinship",
-        "avatar": "https://avatars.githubusercontent.com/u/43101774?v=4",
-        "description": "Algorithms to estimate kinship in haploid-diploid mixed populations",
+        "uid": "gitlab/chrjan/seq-seq-pan",
+        "url": "https://gitlab.com/chrjan/seq-seq-pan",
+        "rel": "/software/repository/gitlab/chrjan/seq-seq-pan",
+        "avatar": "https://gitlab.comNone",
+        "description": "seq-seq-pan is a workflow for the SEQuential alignment of SEQuences to build a PAN-genome data structure and a whole-genome-alignment.",
         "topics": []
     },
     {
-        "uid": "github/OpenEnergyPlatform/open-MaStR",
-        "url": "https://github.com/OpenEnergyPlatform/open-MaStR",
-        "rel": "/software/repository/github/OpenEnergyPlatform/open-MaStR",
-        "avatar": "https://avatars.githubusercontent.com/u/37101913?v=4",
-        "description": "A collaborative software to download the energy database Marktstammdatenregister (MaStR)",
+        "uid": "gitlab/multigris/mgris",
+        "url": "https://gitlab.com/multigris/mgris",
+        "rel": "/software/repository/gitlab/multigris/mgris",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/34419388/multigris_small.png",
+        "description": "MULTIGRIS (\"mgris\") is a Bayesian multi-dimensional grid search using PyMC to extract the posterior distributions of primary grid parameters and predict unobserved parameters/observables.",
         "topics": [
-            "open-energy-family",
-            "oep",
-            "marktstammdatenregister",
-            "python",
-            "energy",
-            "energy-data",
-            "dataset",
-            "datasets",
-            "solar"
+            "Bayesian statistics",
+            "astrophysics",
+            "grid",
+            "mcmc",
+            "modelling"
         ]
     },
     {
-        "uid": "github/goshng/polap",
-        "url": "https://github.com/goshng/polap",
-        "rel": "/software/repository/github/goshng/polap",
-        "avatar": "https://avatars.githubusercontent.com/u/478173?v=4",
-        "description": "Polap is a plant mtDNA assembly pipeline using Flye long-read assembler guided by organelle gene annotation.",
-        "topics": [
-            "genome-annotation",
-            "genome-assembly",
-            "mitochondrial-genomes",
-            "plant"
-        ]
+        "uid": "gitlab/octopus-code/octopus",
+        "url": "https://gitlab.com/octopus-code/octopus",
+        "rel": "/software/repository/gitlab/octopus-code/octopus",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/2018405/octopus.png",
+        "description": "Real-space Time-Dependent Density Functional Theory code",
+        "topics": []
     },
     {
-        "uid": "github/glis-glis/loci",
-        "url": "https://github.com/glis-glis/loci",
-        "rel": "/software/repository/github/glis-glis/loci",
-        "avatar": "https://avatars.githubusercontent.com/u/31037208?v=4",
-        "description": "Smooth Cubic Multivariate Local Interpolations",
+        "uid": "gitlab/Molcas/OpenMolcas",
+        "url": "https://gitlab.com/Molcas/OpenMolcas",
+        "rel": "/software/repository/gitlab/Molcas/OpenMolcas",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/3536517/logo_open_flat.png",
+        "description": "OpenMolcas is a quantum chemistry software package.\r\n\r\nThe key feature of OpenMolcas is the multiconfigurational approach to the electronic structure.",
         "topics": [
-            "c",
-            "python",
-            "jupyter-notebook",
-            "interpolation",
-            "grid",
-            "cubic",
-            "local"
+            "chemistry",
+            "physics",
+            "quantum"
         ]
     },
     {
-        "uid": "github/inab/trimal",
-        "url": "https://github.com/inab/trimal",
-        "rel": "/software/repository/github/inab/trimal",
-        "avatar": "https://avatars.githubusercontent.com/u/3019853?v=4",
-        "description": "A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0",
+        "uid": "gitlab/medbio/disgenet2r",
+        "url": "https://gitlab.com/medbio/disgenet2r",
+        "rel": "/software/repository/gitlab/medbio/disgenet2r",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/58949561/Profile_Pic_Disgenet.png",
+        "description": null,
+        "topics": []
+    },
+    {
+        "uid": "gitlab/andrea-tango/ficos",
+        "url": "https://gitlab.com/andrea-tango/ficos",
+        "rel": "/software/repository/gitlab/andrea-tango/ficos",
+        "avatar": "https://gitlab.comNone",
+        "description": "",
+        "topics": []
+    },
+    {
+        "uid": "gitlab/davidwoodburn/itrm",
+        "url": "https://gitlab.com/davidwoodburn/itrm",
+        "rel": "/software/repository/gitlab/davidwoodburn/itrm",
+        "avatar": "https://gitlab.comNone",
+        "description": "Interactive Terminal Utilities",
         "topics": [
-            "multiple-sequence-alignment",
-            "trimming",
-            "bioinformatics-tool"
+            "ascii-art",
+            "interactive",
+            "plotting",
+            "terminal"
         ]
     },
     {
-        "uid": "github/hera-team/librarian",
-        "url": "https://github.com/HERA-Team/librarian",
-        "rel": "/software/repository/github/hera-team/librarian",
-        "avatar": "https://avatars.githubusercontent.com/u/14352544?v=4",
-        "description": "The HERA Librarian.",
+        "uid": "gitlab/casi-project/casi-2d",
+        "url": "https://gitlab.com/casi-project/casi-2d",
+        "rel": "/software/repository/gitlab/casi-project/casi-2d",
+        "avatar": "https://gitlab.comNone",
+        "description": "Identification of  stellar feedback signatures in simulated molecular clouds using methods from deep learning.",
         "topics": []
     },
     {
-        "uid": "github/conchoecia/pauvre",
-        "url": "https://github.com/conchoecia/pauvre",
-        "rel": "/software/repository/github/conchoecia/pauvre",
-        "avatar": "https://avatars.githubusercontent.com/u/3123273?v=4",
-        "description": "Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.",
+        "uid": "gitlab/casi-project/casi-3d",
+        "url": "https://gitlab.com/casi-project/casi-3d",
+        "rel": "/software/repository/gitlab/casi-project/casi-3d",
+        "avatar": "https://gitlab.comNone",
+        "description": null,
         "topics": []
     },
     {
-        "uid": "github/akinremisa/rfsed",
-        "url": "https://github.com/akinremisa/rfsed",
-        "rel": "/software/repository/github/akinremisa/rfsed",
-        "avatar": "https://avatars.githubusercontent.com/u/107252532?v=4",
-        "description": "Package for standard and sediment correction receiver functions analysis",
+        "uid": "gitlab/binary_c/binary_c-python",
+        "url": "https://gitlab.com/binary_c/binary_c-python",
+        "rel": "/software/repository/gitlab/binary_c/binary_c-python",
+        "avatar": "https://gitlab.comNone",
+        "description": "Python module to interface with the binary_c stellar population framework.\r\n\r\nThe current stable branch is 1.0.0 which you can find in the [releases/1.0.0/2.2.4 branch](https://gitlab.com/binary_c/binary_c-python/-/tree/releases/1.0.0/2.2.4) which works with [binary_c version 2.2.4](https://gitlab.com/binary_c/binary_c/-/tree/development/2.2.4)",
         "topics": []
     },
     {
-        "uid": "github/chandra-marx/marxs",
-        "url": "https://github.com/Chandra-MARX/marxs",
-        "rel": "/software/repository/github/chandra-marx/marxs",
-        "avatar": "https://avatars.githubusercontent.com/u/10633195?v=4",
-        "description": "Multi-Architecture-Raytrace-Xraymission-Simulator",
-        "topics": [
-            "python",
-            "raytracing",
-            "astronomy"
-        ]
+        "uid": "gitlab/emd-dev/emd",
+        "url": "https://gitlab.com/emd-dev/emd",
+        "rel": "/software/repository/gitlab/emd-dev/emd",
+        "avatar": "https://gitlab.comNone",
+        "description": "Empirical Mode Decomposition in Python\r\n\r\n<a href=\"https://gitlab.com/ajquinn/emd/commits/master\"><img alt=\"pipeline status\" src=\"https://gitlab.com/ajquinn/emd/badges/master/pipeline.svg\" /></a>",
+        "topics": []
     },
     {
-        "uid": "github/sblunt/orbitize",
-        "url": "https://github.com/sblunt/orbitize",
-        "rel": "/software/repository/github/sblunt/orbitize",
-        "avatar": "https://avatars.githubusercontent.com/u/20113975?v=4",
-        "description": "Orbit-fitting for directly imaged objects",
+        "uid": "gitlab/rahmannlab/episegmix",
+        "url": "https://gitlab.com/rahmannlab/episegmix",
+        "rel": "/software/repository/gitlab/rahmannlab/episegmix",
+        "avatar": "https://gitlab.comNone",
+        "description": null,
         "topics": []
     },
     {
-        "uid": "github/ctSkennerton/crass",
-        "url": "https://github.com/ctSkennerton/crass",
-        "rel": "/software/repository/github/ctSkennerton/crass",
-        "avatar": "https://avatars.githubusercontent.com/u/685235?v=4",
-        "description": "Crass is designed to identify and reconstruct CRISPR loci from raw metagenomic data without the need for assembly or prior knowledge of CRISPR in the data set.",
+        "uid": "gitlab/loic.cg.rossi/pymiedap",
+        "url": "https://gitlab.com/loic.cg.rossi/pymiedap",
+        "rel": "/software/repository/gitlab/loic.cg.rossi/pymiedap",
+        "avatar": "https://gitlab.comNone",
+        "description": "PyMieDAP = Python Mie Doubling Adding Program. A radiative transfer code with polarization.",
         "topics": [
-            "crispr",
-            "bioinformatics"
+            "astronomy",
+            "atmospheres",
+            "polarization",
+            "radiative transfer"
         ]
     },
     {
-        "uid": "github/ctSkennerton/minced",
-        "url": "https://github.com/ctSkennerton/minced",
-        "rel": "/software/repository/github/ctSkennerton/minced",
-        "avatar": "https://avatars.githubusercontent.com/u/685235?v=4",
-        "description": "Mining CRISPRs in Environmental Datasets",
-        "topics": [
-            "bioinformatics",
-            "crispr"
-        ]
+        "uid": "gitlab/souvlaki/thalassa",
+        "url": "https://gitlab.com/souvlaki/thalassa",
+        "rel": "/software/repository/gitlab/souvlaki/thalassa",
+        "avatar": "https://gitlab.comNone",
+        "description": null,
+        "topics": []
     },
     {
-        "uid": "github/TinkerTools/Tinker-HP",
-        "url": "https://github.com/TinkerTools/tinker-hp",
-        "rel": "/software/repository/github/TinkerTools/Tinker-HP",
-        "avatar": "https://avatars.githubusercontent.com/u/39835945?v=4",
-        "description": "Tinker-HP: High-Performance Massively Parallel Evolution of Tinker on CPUs & GPUs",
+        "uid": "gitlab/ezlab/busco",
+        "url": "https://gitlab.com/ezlab/busco",
+        "rel": "/software/repository/gitlab/ezlab/busco",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/1544766/Screen_Shot_2019-11-26_at_17.26.57.png",
+        "description": "Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs (BUSCO)",
         "topics": []
     },
     {
-        "uid": "github/TinkerTools/tinker9",
-        "url": "https://github.com/TinkerTools/tinker9",
-        "rel": "/software/repository/github/TinkerTools/tinker9",
-        "avatar": "https://avatars.githubusercontent.com/u/39835945?v=4",
-        "description": "Tinker9: Next Generation of Tinker with GPU Support",
-        "topics": [
-            "molecular-dynamics",
-            "molecular-mechanics",
-            "force-fields",
-            "biomolecular-simulation",
-            "molecular-modeling",
-            "gpu-computing"
-        ]
+        "uid": "gitlab/AstroVian/bmarxiv",
+        "url": "https://gitlab.com/AstroVian/bmarxiv",
+        "rel": "/software/repository/gitlab/AstroVian/bmarxiv",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/28500894/PAph_dog.gif",
+        "description": null,
+        "topics": []
     },
     {
-        "uid": "github/astrockragh/Mangrove",
-        "url": "https://github.com/astrockragh/Mangrove",
-        "rel": "/software/repository/github/astrockragh/Mangrove",
-        "avatar": "https://avatars.githubusercontent.com/u/47056775?v=4",
-        "description": "Using Graph Neural Networks to regress baryonic properties directly from full dark matter merger trees.",
+        "uid": "gitlab/sevecekp/sph",
+        "url": "https://gitlab.com/sevecekp/sph",
+        "rel": "/software/repository/gitlab/sevecekp/sph",
+        "avatar": "https://gitlab.comNone",
+        "description": "Library and graphical tools for running SPH and N-body simulations.",
         "topics": [
-            "astrophysics",
-            "gnn",
-            "graphs"
+            "SPH",
+            "nbody",
+            "opensph",
+            "simulation"
         ]
     },
     {
-        "uid": "github/sebastian-zieba/PACMAN",
-        "url": "https://github.com/sebastian-zieba/PACMAN",
-        "rel": "/software/repository/github/sebastian-zieba/PACMAN",
-        "avatar": "https://avatars.githubusercontent.com/u/44154733?v=4",
-        "description": "PACMAN is a pipeline to reduce and analyze data collected by Hubble Wide Field Camera 3 (HST/WFC3) using either the G102 or G141 grism.",
-        "topics": [
-            "python",
-            "exoplanets",
-            "hst",
-            "astronomy",
-            "wfc3"
-        ]
+        "uid": "gitlab/uit-sfb/metapipe",
+        "url": "https://gitlab.com/uit-sfb/metapipe",
+        "rel": "/software/repository/gitlab/uit-sfb/metapipe",
+        "avatar": "https://gitlab.comNone",
+        "description": "Metapipe based on Nextflow",
+        "topics": []
     },
     {
-        "uid": "github/ChemaPalencia/M_SMiLe",
-        "url": "https://github.com/ChemaPalencia/M_SMiLe",
-        "rel": "/software/repository/github/ChemaPalencia/M_SMiLe",
-        "avatar": "https://avatars.githubusercontent.com/u/100603350?v=4",
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+        "avatar": "https://gitlab.comNone",
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+        "avatar": "https://gitlab.comNone",
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         "topics": []
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+        "description": "time-HArmonic Wave modEling and INversion using Hybridizable Discontinuous Galerkin Discretization (hawen). The code is written in Fortran90, for forward and inverse time-harmonic wave problems. It uses mpi and openmp parallelism.",
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+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/12601405/Untitled-1.png",
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         "topics": []
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+        "rel": "/software/repository/gitlab/mcfuman/SpectraPy",
+        "avatar": "https://gitlab.comNone",
+        "description": "Python module to extract and reduce astronomical spectral data",
         "topics": []
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+        "url": "https://gitlab.com/joseaher/astroplotlib",
+        "rel": "/software/repository/gitlab/joseaher/astroplotlib",
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+        "description": null,
         "topics": []
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-        "description": "WISP: Wenger Interferometry Software Package",
+        "uid": "gitlab/mobse/source-code",
+        "url": "https://gitlab.com/mobse/source-code",
+        "rel": "/software/repository/gitlab/mobse/source-code",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/15981708/mobse_code_copia.png",
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         "topics": []
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-        "uid": "github/tvwenger/kd",
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-        "description": "Utilities to calculate kinematic distances",
+        "uid": "gitlab/kmrajwade/iqrm_apollo",
+        "url": "https://gitlab.com/kmrajwade/iqrm_apollo",
+        "rel": "/software/repository/gitlab/kmrajwade/iqrm_apollo",
+        "avatar": "https://gitlab.comNone",
+        "description": "A standalone code to clean narrow-band RFI using Inter-Quartile Range Mitigation (IQRM) algorithm. The code works on SIGPROC format data and outputs a cleaned SIGRPOC format file. The output file is compatible with other standard pulsar software.",
         "topics": []
     },
     {
-        "uid": "github/tvwenger/bayes_spec",
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-        "avatar": "https://avatars.githubusercontent.com/u/5921304?v=4",
-        "description": "A Bayesian Spectral Line Modeling Framework",
+        "uid": "gitlab/ags-data-format-wg/ags-python-library",
+        "url": "https://gitlab.com/ags-data-format-wg/ags-python-library",
+        "rel": "/software/repository/gitlab/ags-data-format-wg/ags-python-library",
+        "avatar": "https://gitlab.comNone",
+        "description": "A library to read and write AGS files using Pandas DataFrames",
         "topics": []
     },
     {
-        "uid": "github/tvwenger/kinematic_scaleheight",
-        "url": "https://github.com/tvwenger/kinematic_scaleheight",
-        "rel": "/software/repository/github/tvwenger/kinematic_scaleheight",
-        "avatar": "https://avatars.githubusercontent.com/u/5921304?v=4",
-        "description": "Use MCMC methods to kinematically estimate the vertical distribution of clouds in the Galactic plane",
+        "uid": "gitlab/bu_cnio/vulcanspot",
+        "url": "https://gitlab.com/bu_cnio/vulcanspot",
+        "rel": "/software/repository/gitlab/bu_cnio/vulcanspot",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/12800427/logo.png",
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         "topics": []
     },
     {
-        "uid": "github/llrs/experDesign",
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-        "avatar": "https://avatars.githubusercontent.com/u/6818218?v=4",
-        "description": "Design experiments distributed in several batches",
+        "uid": "gitlab/JuditGG/trumpetplots",
+        "url": "https://gitlab.com/JuditGG/trumpetplots",
+        "rel": "/software/repository/gitlab/JuditGG/trumpetplots",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/45249770/trumpet-icon-design-free-vector.jpg",
+        "description": "Rpackage for Trumpet plots",
         "topics": [
-            "experiment-design",
-            "batch",
-            "cran"
+            "genetics",
+            "gwas",
+            "visualization"
         ]
     },
     {
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-        "url": "https://github.com/easystats/parameters",
-        "rel": "/software/repository/github/easystats/parameters",
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-            "easystats",
-            "bootsrap",
-            "standardize",
-            "pca",
-            "feature",
-            "fa"
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+        "uid": "gitlab/LouisLab/PiVR",
+        "url": "https://gitlab.com/LouisLab/pivr",
+        "rel": "/software/repository/gitlab/LouisLab/PiVR",
+        "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/9212004/PiVR_logo.png",
+        "description": "PiVR has been developed to track a variety of animals in real time and present them with light stimuli. Manual can be found at www.PiVR.org, scientific publication at  https://doi.org/10.1371/journal.pbio.3000712\r\n",
+        "topics": []
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     {
-        "uid": "github/easystats/correlation",
-        "url": "https://github.com/easystats/correlation",
-        "rel": "/software/repository/github/easystats/correlation",
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-        "description": ":link: Methods for Correlation Analysis",
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-            "partial-correlations",
-            "gaussian-graphical-models",
-            "regression",
-            "correlations",
-            "matrix",
-            "bayesian-correlations"
-        ]
+        "uid": "gitlab/davidtourigny/dynamic-fba",
+        "url": "https://gitlab.com/davidtourigny/dynamic-fba",
+        "rel": "/software/repository/gitlab/davidtourigny/dynamic-fba",
+        "avatar": "https://gitlab.comNone",
+        "description": "",
+        "topics": []
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-        "description": ":muscle: Models' quality and performance metrics (R2, ICC, LOO, AIC, BF, ...)",
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-            "aic",
-            "performance",
-            "models",
-            "loo",
-            "r",
-            "easystats",
-            "mixed-models"
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+        "url": "https://gitlab.com/mainlabwsu/bims",
+        "rel": "/software/repository/gitlab/mainlabwsu/bims",
+        "avatar": "https://gitlab.comNone",
+        "description": "BIMS",
+        "topics": []
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-        "url": "https://github.com/easystats/effectsize",
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-        "description": ":dragon: Compute and work with indices of effect size and standardized parameters",
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-            "anova",
-            "standardization",
-            "hedges-g",
-            "effect-size",
-            "compute",
-            "standardized"
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+        "uid": "gitlab/project-dare/dare-platform",
+        "url": "https://gitlab.com/project-dare/dare-platform",
+        "rel": "/software/repository/gitlab/project-dare/dare-platform",
+        "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/14873006/dare.png",
+        "description": "",
+        "topics": []
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-        "uid": "github/RajLabMSSM/echolocatoR",
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-        "rel": "/software/repository/github/RajLabMSSM/echolocatoR",
-        "avatar": "https://avatars.githubusercontent.com/u/43655912?v=4",
-        "description": "Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.",
+        "uid": "gitlab/BioimageInformaticsGroup/openphi",
+        "url": "https://gitlab.com/BioimageInformaticsGroup/openphi",
+        "rel": "/software/repository/gitlab/BioimageInformaticsGroup/openphi",
+        "avatar": "https://gitlab.comNone",
+        "description": "Open PatHology Interface - A Python API for accessing iSyntax digital pathology images",
+        "topics": []
+    },
+    {
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+        "url": "https://gitlab.com/libreumg/dataquier",
+        "rel": "/software/repository/gitlab/libreumg/dataquier",
+        "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/14144828/logo_ship.png",
+        "description": "",
+        "topics": []
+    },
+    {
+        "uid": "gitlab/mbiagetti/persistent_homology_lss",
+        "url": "https://gitlab.com/mbiagetti/persistent_homology_lss",
+        "rel": "/software/repository/gitlab/mbiagetti/persistent_homology_lss",
+        "avatar": "https://gitlab.comNone",
+        "description": "Analyze halo catalogs using persistent homology to constrain cosmological parameters",
         "topics": [
-            "bioinformatics",
-            "finemap",
-            "colocalization",
-            "linkage-disequilibrium",
-            "gwas",
-            "qtl",
-            "variant-annotation",
-            "echoverse"
+            "Dark Matter Halos",
+            "Galaxy Surveys",
+            "Nbody Simulations",
+            "Persistent Homology",
+            "Primordial non-Gaussianity",
+            "Topological Data Analysis",
+            "cosmology"
         ]
     },
     {
-        "uid": "github/pyplati/platipy",
-        "url": "https://github.com/pyplati/platipy",
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-        "description": "Processing Library and Analysis Toolkit for Medical Imaging in Python",
+        "uid": "gitlab/remram44/taguette",
+        "url": "https://gitlab.com/remram44/taguette",
+        "rel": "/software/repository/gitlab/remram44/taguette",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/8339211/taguette.png",
+        "description": "Free and open source qualitative research tool",
         "topics": [
-            "image-analysis",
-            "medical-imaging",
-            "python",
-            "registration",
-            "segmentation",
-            "visualization"
+            "document",
+            "hacktoberfest",
+            "highlights",
+            "notes",
+            "qual",
+            "qualitative",
+            "research",
+            "tagging",
+            "tags",
+            "text"
         ]
     },
     {
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-        "url": "https://github.com/hope-data-science/tidyfst",
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-        "avatar": "https://avatars1.githubusercontent.com/u/32947502?v=4",
-        "description": "Tidy Verbs for Fast Data Manipulation",
+        "uid": "gitlab/geekysquirrel/bigx",
+        "url": "https://gitlab.com/geekysquirrel/bigx",
+        "rel": "/software/repository/gitlab/geekysquirrel/bigx",
+        "avatar": "https://assets.gitlab-static.net/uploads/-/system/project/avatar/10925765/bigx.png",
+        "description": "A data visualisation tool for geographic datasets",
         "topics": []
     },
     {
-        "uid": "github/ComtekAdvancedStructures/cmstatr",
-        "url": "https://github.com/ComtekAdvancedStructures/cmstatr",
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-        "description": "An R Package for Statistical Analysis of Composite Material Data",
-        "topics": [
-            "statistics",
-            "r",
-            "data",
-            "materials-science"
-        ]
+        "uid": "gitlab/fduchate/predihood",
+        "url": "https://gitlab.com/fduchate/predihood",
+        "rel": "/software/repository/gitlab/fduchate/predihood",
+        "avatar": "https://gitlab.comNone",
+        "description": "",
+        "topics": []
     },
     {
-        "uid": "github/GoelandProver/Goeland",
-        "url": "https://github.com/GoelandProver/Goeland",
-        "rel": "/software/repository/github/GoelandProver/Goeland",
-        "avatar": "https://avatars.githubusercontent.com/u/99547210?v=4",
-        "description": "A first-order concurrent automated theorem prover",
+        "uid": "gitlab/andreas.andrusch/paipline",
+        "url": "https://gitlab.com/andreas.andrusch/paipline",
+        "rel": "/software/repository/gitlab/andreas.andrusch/paipline",
+        "avatar": "https://gitlab.comNone",
+        "description": "Pipeline for the Automatic Identification of Pathogens",
         "topics": []
     },
     {
-        "uid": "github/upb-lea/openmodelica-microgrid-gym",
-        "url": "https://github.com/upb-lea/openmodelica-microgrid-gym",
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-            "openai-gym",
-            "openai-gym-environments",
-            "machine-learning",
-            "control",
-            "simulation",
-            "modelica",
-            "openmodelica",
-            "power-electronics",
-            "power-systems",
-            "microgrid",
-            "energy-system-modeling",
-            "power-supply",
-            "smart-grids",
-            "engineering",
-            "electrical-engineering",
-            "python"
-        ]
+        "uid": "gitlab/astron-idg/idg",
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+            "FRF synthetisation",
+            "MCK model",
+            "System Equivalent Modal Mixing",
+            "Virtual Point Transformation"
         ]
     },
     {
-        "uid": "github/sybila/biodivine-aeon-py",
-        "url": "https://github.com/sybila/biodivine-aeon-py",
-        "rel": "/software/repository/github/sybila/biodivine-aeon-py",
-        "avatar": "https://avatars.githubusercontent.com/u/748023?v=4",
-        "description": null,
-        "topics": []
-    },
-    {
-        "uid": "github/UM-PEPL/HallThruster.jl",
-        "url": "https://github.com/UM-PEPL/HallThruster.jl",
-        "rel": "/software/repository/github/UM-PEPL/HallThruster.jl",
-        "avatar": "https://avatars.githubusercontent.com/u/102543730?v=4",
-        "description": "An open-source fluid Hall thruster code",
+        "uid": "gitlab/dglaeser/fieldcompare",
+        "url": "https://gitlab.com/dglaeser/fieldcompare",
+        "rel": "/software/repository/gitlab/dglaeser/fieldcompare",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/32838547/fcompare_logo.png",
+        "description": "Python package with command-line interface to compare field data",
         "topics": []
     },
     {
-        "uid": "github/ExoplanetML/Nigraha",
-        "url": "https://github.com/ExoplanetML/Nigraha",
-        "rel": "/software/repository/github/ExoplanetML/Nigraha",
-        "avatar": "https://avatars.githubusercontent.com/u/77851194?v=4",
-        "description": "A neural network based pipeline to identify and evaluate planet candidates from TESS light curves.",
+        "uid": "gitlab/random-quintessence/random-quintessence",
+        "url": "https://gitlab.com/random-quintessence/random-quintessence",
+        "rel": "/software/repository/gitlab/random-quintessence/random-quintessence",
+        "avatar": "https://gitlab.comNone",
+        "description": null,
         "topics": []
     },
     {
-        "uid": "github/clawpack/pyclaw",
-        "url": "https://github.com/clawpack/pyclaw",
-        "rel": "/software/repository/github/clawpack/pyclaw",
-        "avatar": "https://avatars3.githubusercontent.com/u/725474?v=4",
-        "description": "PyClaw is a Python-based interface to the algorithms of Clawpack and SharpClaw.  It also contains the PetClaw package, which adds parallelism through PETSc.",
-        "topics": []
+        "uid": "gitlab/open-darts/open-darts",
+        "url": "https://gitlab.com/open-darts/open-darts",
+        "rel": "/software/repository/gitlab/open-darts/open-darts",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/43477574/logo.png",
+        "description": "The DARTS framework is designed for forward and inverse modeling in geo-energy applications.",
+        "topics": [
+            "energy transition",
+            "geothermal energy production",
+            "modeling of CO2 sequestration"
+        ]
     },
     {
-        "uid": "github/clawpack/clawpack",
-        "url": "https://github.com/clawpack/clawpack",
-        "rel": "/software/repository/github/clawpack/clawpack",
-        "avatar": "https://avatars3.githubusercontent.com/u/725474?v=4",
-        "description": "Package for solving hyperbolic systems of partial differential equations",
-        "topics": []
+        "uid": "gitlab/permafrostnet/teaspoon",
+        "url": "https://gitlab.com/permafrostnet/teaspoon",
+        "rel": "/software/repository/gitlab/permafrostnet/teaspoon",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/35916406/teaspooncolor_p.png",
+        "description": "Python for permafrost temperature data",
+        "topics": [
+            "dataset",
+            "earth science",
+            "geography"
+        ]
     },
     {
-        "uid": "github/Cantera/cantera",
-        "url": "https://github.com/Cantera/cantera",
-        "rel": "/software/repository/github/Cantera/cantera",
-        "avatar": "https://avatars2.githubusercontent.com/u/817698?v=4",
-        "description": "Chemical kinetics, thermodynamics, and transport tool suite",
+        "uid": "gitlab/treangenlab/emu",
+        "url": "https://gitlab.com/treangenlab/emu",
+        "rel": "/software/repository/gitlab/treangenlab/emu",
+        "avatar": "https://gitlab.com/treangenlab/emu/-/avatar",
+        "description": "EMu is a relative abundance estimator for 16S genomic sequences",
         "topics": []
     },
     {
-        "uid": "github/zheng-lh/UBER",
-        "url": "https://github.com/zheng-lh/UBER",
-        "rel": "/software/repository/github/zheng-lh/UBER",
-        "avatar": "https://avatars.githubusercontent.com/u/81456511?v=4",
-        "description": "Universal Boltzmann Equation Solver",
+        "uid": "gitlab/treangenlab/vulcan",
+        "url": "https://gitlab.com/treangenlab/vulcan",
+        "rel": "/software/repository/gitlab/treangenlab/vulcan",
+        "avatar": "https://gitlab.comNone",
+        "description": "",
         "topics": []
     },
     {
-        "uid": "github/JensUweUlrich/ReadBouncer",
-        "url": "https://github.com/JensUweUlrich/ReadBouncer",
-        "rel": "/software/repository/github/JensUweUlrich/ReadBouncer",
-        "avatar": "https://avatars.githubusercontent.com/u/46562264?v=4",
-        "description": "Fast and scalable nanopore adaptive sampling",
+        "uid": "gitlab/polmag/PORTA",
+        "url": "https://gitlab.com/polmag/PORTA",
+        "rel": "/software/repository/gitlab/polmag/PORTA",
+        "avatar": "https://gitlab.com/uploads/-/system/project/avatar/12210898/porta-logo-bw.png",
+        "description": "PORTA: A three-dimensional multilevel radiative transfer code for modeling the intensity and polarization of spectral lines with massively parallel computers",
         "topics": []
     },
     {
-        "uid": "github/WelbornGroup/ELECTRIC",
-        "url": "https://github.com/WelbornGroup/ELECTRIC",
-        "rel": "/software/repository/github/WelbornGroup/ELECTRIC",
-        "avatar": "https://avatars2.githubusercontent.com/u/49160194?v=4",
-        "description": "ELECTRIC: Electric fields Leveraged from multipole Expansion Calculations in Tinker Rapid Interface Code.",
+        "uid": "gitlab/dsbowen/conditional-inference",
+        "url": "https://gitlab.com/dsbowen/conditional-inference",
+        "rel": "/software/repository/gitlab/dsbowen/conditional-inference",
+        "avatar": "https://gitlab.comNone",
+        "description": null,
         "topics": []
     },
     {
-        "uid": "github/pavolgaj/ObsPlanner",
-        "url": "https://github.com/pavolgaj/ObsPlanner",
-        "rel": "/software/repository/github/pavolgaj/ObsPlanner",
-        "avatar": "https://avatars.githubusercontent.com/u/17177193?v=4",
-        "description": "Simple program for planning and managing astronomical observations",
+        "uid": "gitlab/chaver/choco-mining",
+        "url": "https://gitlab.com/chaver/choco-mining",
+        "rel": "/software/repository/gitlab/chaver/choco-mining",
+        "avatar": "https://gitlab.comNone",
+        "description": "Data mining with Choco solver",
         "topics": [
-            "astronomy",
-            "observation"
+            "Association Rules Mining",
+            "Choco solver",
+            "Constraint Programming",
+            "Pareto",
+            "Skypattern",
+            "data mining",
+            "pattern mining"
         ]
     },
     {
-        "uid": "github/pavolgaj/OCFit",
-        "url": "https://github.com/pavolgaj/OCFit",
-        "rel": "/software/repository/github/pavolgaj/OCFit",
-        "avatar": "https://avatars.githubusercontent.com/u/17177193?v=4",
-        "description": "Python package for fitting of O-C diagrams.",
-        "topics": [
-            "python",
-            "astronomy",
-            "fitting-algorithm"
-        ]
+        "uid": "gitlab/moerman1/fhi-cc4s",
+        "url": "https://gitlab.com/moerman1/fhi-cc4s",
+        "rel": "/software/repository/gitlab/moerman1/fhi-cc4s",
+        "avatar": "https://gitlab.comNone",
+        "description": "This project constitutes the interface between the Fritz Haber Institute ab initio molecular simulations (FHI-aims) and the Coupled Cluster for Solids (CC4S) code developed by Felix Hummel and Adreas Grueneis at the TU Wien. \r\n",
+        "topics": []
     }
 ]
\ No newline at end of file
diff --git a/docs/repository/github/18parkky/NanoMnT/annotate-criteria/index.html b/docs/repository/github/18parkky/NanoMnT/annotate-criteria/index.html
new file mode 100644
index 000000000..b1d721e24
--- /dev/null
+++ b/docs/repository/github/18parkky/NanoMnT/annotate-criteria/index.html
@@ -0,0 +1,169 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria for github/18parkky/NanoMnT</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+td {
+  font-size:17px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+          <div class="row">
+            <div class="col-md-12">
+<div style="padding:20px">
+  <h3>What do you think about <strong><a target="_blank" href="https://github.com/18parkky/NanoMnT">github/18parkky/NanoMnT</strong></a>
+  <a href="https://github.com/18parkky/NanoMnT" target="_blank"><img src="https://avatars.githubusercontent.com/u/111036812?v=4" style="max-height:200px; float:right"></a> 
+</h3>
+  <p><strong>Python package for analyzing STR from ONT data</strong></p> 
+  <p style="font-style:italic; color: darkred;">If you don't know an answer, don't answer it!</p>
+</div>
+  <br>
+
+  <form method="GET">
+  <table class="table table-bordered">
+    <colgroup>
+      <col width="50%">
+      <col width="50%">
+    </colgroup>
+    <thead>
+    <th>Question</th>
+    <th>Your Response</th>
+    </thead>
+    <tbody>
+     <input type="hidden" name="repo_uid" value="https://github.com/18parkky/NanoMnT">
+    <tr>
+      <td>Would taking away the software be a detriment to research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been cited?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for a particular domain?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Was the software created with intention to solve a research question?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been used by researchers?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr>
+    </tbody>
+  </table>
+
+  <br>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+      <i class="glyphicon glyphicon-question-sign" style="font-size:20px; color:#428bca; cursor:pointer" title="Your submission will be posted as a new GitHub issue, with automation to update the database."></i>
+    </div>
+  </div>
+  </form>
+            </div>
+	</div>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   body = "%23%23%20Criteria%0A"
+   var repo_id
+
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name.startsWith("RSE")) {
+          if (item.value == "yes") {
+              body += ("%20-%20%5Bx%5D%20criteria-" + item.name + "%0A")
+          } else if (item.value == "no") {
+              body += ("%20-%20%5B%20%5D%20criteria-" + item.name + "%0A")
+          }
+      } else if (item.name == "repo_uid") {
+          repo_id = item.value;
+      }
+   });
+   
+   body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+   console.log(body)
+   url = "https://github.com/rseng/software/issues/new?labels=criteria&title=[CRITERIA]&body=" + body
+   console.log(url)
+   document.location = url
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/18parkky/NanoMnT/annotate-taxonomy/index.html b/docs/repository/github/18parkky/NanoMnT/annotate-taxonomy/index.html
new file mode 100644
index 000000000..de8738e3d
--- /dev/null
+++ b/docs/repository/github/18parkky/NanoMnT/annotate-taxonomy/index.html
@@ -0,0 +1,254 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <h2><a target="_blank" href="https://github.com/18parkky/NanoMnT">github/18parkky/NanoMnT</a></h2>
+      <p>How would you categorize this software? Choose more than one. See <a href="https://rseng.github.io/rseng/tag/#block-taxonomy" target="_blank">examples</a> and <a href="https://rseng.github.io/rseng/taxonomy-circle/" target="_blank">visual</a></p>
+      <p>Your submission will be posted as a new GitHub issue, with automation to update the database.</p>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+         <form method="GET"">
+         <input type="hidden" name="repo_uid" value="https://github.com/18parkky/NanoMnT">
+         <input type="hidden" name="username" value="None">
+	  <table class="table">
+	    <tbody>
+	      
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-analysis" id="RSE-taxonomy-analysis"><strong> Domain-specific analysis software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-domain-hardware" id="RSE-taxonomy-domain-hardware"><strong> Domain-specific hardware </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-optimized" id="RSE-taxonomy-optimized"><strong> Domain-specific optimized software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-data-collection" id="RSE-taxonomy-data-collection"><strong> Data collection </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-numerical-libraries" id="RSE-taxonomy-numerical-libraries"><strong> Numerical libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-visualization" id="RSE-taxonomy-visualization"><strong> Visualization </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-ide-research" id="RSE-taxonomy-ide-research"><strong> Interactive development environments for research </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-provenance-metadata-tools" id="RSE-taxonomy-provenance-metadata-tools"><strong> Provenance and metadata collection tools </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-workflow-managers" id="RSE-taxonomy-workflow-managers"><strong> Workflow managers </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-communication-tools" id="RSE-taxonomy-communication-tools"><strong> Communication tools or platforms </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-helper-libraries" id="RSE-taxonomy-helper-libraries"><strong> Formatting, indexing, or other small helper libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-infrastructure" id="RSE-taxonomy-infrastructure"><strong> Infrastructure </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-operating-systems" id="RSE-taxonomy-operating-systems"><strong> Operating systems </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-package-management" id="RSE-taxonomy-package-management"><strong> Package Management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-personal-scheduling-task-management" id="RSE-taxonomy-personal-scheduling-task-management"><strong> Personal scheduling and task management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-testing" id="RSE-taxonomy-testing"><strong> Testing </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-text-editors-ides" id="RSE-taxonomy-text-editors-ides"><strong> Text editors and integrated development environments </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-version-control" id="RSE-taxonomy-version-control"><strong> Version control </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-virtualization" id="RSE-taxonomy-virtualization"><strong> Virtualization technologies </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-application-programming-interfaces" id="RSE-taxonomy-application-programming-interfaces"><strong> Application Programming Interfaces </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-databases" id="RSE-taxonomy-databases"><strong> Databases </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-frameworks" id="RSE-taxonomy-frameworks"><strong> Frameworks </strong>
+                 </label></td>
+	      </tr>
+	     
+	    </tbody>
+	  </table>
+	</div>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+    </div>
+  </div>
+  </form>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   count = 0
+   body = "%23%23%20Taxonomy%0A"
+   var repo_id;
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name == "repo_uid") {
+          repo_id = item.value;
+      } else if (item.value == "on") {
+          count +=1
+          body += ("%20-%20%5Bx%5D%20" + item.name + "%0A")
+      }  
+   });
+
+   if (count == 0) {
+      alert("Please select one or more categories!")
+   } else {
+       body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+       console.log(body)
+       url = "https://github.com/rseng/software/issues/new?labels=taxonomy&title=[TAXONOMY]&body=" + body
+       console.log(url)
+       document.location = url
+   }
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/FZJ-IEK3-VSA/FINE/annotate-criteria/index.html b/docs/repository/github/FZJ-IEK3-VSA/FINE/annotate-criteria/index.html
new file mode 100644
index 000000000..77d11c541
--- /dev/null
+++ b/docs/repository/github/FZJ-IEK3-VSA/FINE/annotate-criteria/index.html
@@ -0,0 +1,169 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria for github/FZJ-IEK3-VSA/FINE</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+td {
+  font-size:17px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+          <div class="row">
+            <div class="col-md-12">
+<div style="padding:20px">
+  <h3>What do you think about <strong><a target="_blank" href="https://github.com/FZJ-IEK3-VSA/FINE">github/FZJ-IEK3-VSA/FINE</strong></a>
+  <a href="https://github.com/FZJ-IEK3-VSA/FINE" target="_blank"><img src="https://avatars.githubusercontent.com/u/28654423?v=4" style="max-height:200px; float:right"></a> 
+</h3>
+  <p><strong>The ETHOS.FINE python package provides a framework for modeling, optimizing and assessing energy systems</strong></p> 
+  <p style="font-style:italic; color: darkred;">If you don't know an answer, don't answer it!</p>
+</div>
+  <br>
+
+  <form method="GET">
+  <table class="table table-bordered">
+    <colgroup>
+      <col width="50%">
+      <col width="50%">
+    </colgroup>
+    <thead>
+    <th>Question</th>
+    <th>Your Response</th>
+    </thead>
+    <tbody>
+     <input type="hidden" name="repo_uid" value="https://github.com/FZJ-IEK3-VSA/FINE">
+    <tr>
+      <td>Would taking away the software be a detriment to research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been cited?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for a particular domain?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Was the software created with intention to solve a research question?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been used by researchers?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr>
+    </tbody>
+  </table>
+
+  <br>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+      <i class="glyphicon glyphicon-question-sign" style="font-size:20px; color:#428bca; cursor:pointer" title="Your submission will be posted as a new GitHub issue, with automation to update the database."></i>
+    </div>
+  </div>
+  </form>
+            </div>
+	</div>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   body = "%23%23%20Criteria%0A"
+   var repo_id
+
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name.startsWith("RSE")) {
+          if (item.value == "yes") {
+              body += ("%20-%20%5Bx%5D%20criteria-" + item.name + "%0A")
+          } else if (item.value == "no") {
+              body += ("%20-%20%5B%20%5D%20criteria-" + item.name + "%0A")
+          }
+      } else if (item.name == "repo_uid") {
+          repo_id = item.value;
+      }
+   });
+   
+   body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+   console.log(body)
+   url = "https://github.com/rseng/software/issues/new?labels=criteria&title=[CRITERIA]&body=" + body
+   console.log(url)
+   document.location = url
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/FZJ-IEK3-VSA/FINE/annotate-taxonomy/index.html b/docs/repository/github/FZJ-IEK3-VSA/FINE/annotate-taxonomy/index.html
new file mode 100644
index 000000000..a35845c4d
--- /dev/null
+++ b/docs/repository/github/FZJ-IEK3-VSA/FINE/annotate-taxonomy/index.html
@@ -0,0 +1,254 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <h2><a target="_blank" href="https://github.com/FZJ-IEK3-VSA/FINE">github/FZJ-IEK3-VSA/FINE</a></h2>
+      <p>How would you categorize this software? Choose more than one. See <a href="https://rseng.github.io/rseng/tag/#block-taxonomy" target="_blank">examples</a> and <a href="https://rseng.github.io/rseng/taxonomy-circle/" target="_blank">visual</a></p>
+      <p>Your submission will be posted as a new GitHub issue, with automation to update the database.</p>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+         <form method="GET"">
+         <input type="hidden" name="repo_uid" value="https://github.com/FZJ-IEK3-VSA/FINE">
+         <input type="hidden" name="username" value="None">
+	  <table class="table">
+	    <tbody>
+	      
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-analysis" id="RSE-taxonomy-analysis"><strong> Domain-specific analysis software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-domain-hardware" id="RSE-taxonomy-domain-hardware"><strong> Domain-specific hardware </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-optimized" id="RSE-taxonomy-optimized"><strong> Domain-specific optimized software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-data-collection" id="RSE-taxonomy-data-collection"><strong> Data collection </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-numerical-libraries" id="RSE-taxonomy-numerical-libraries"><strong> Numerical libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-visualization" id="RSE-taxonomy-visualization"><strong> Visualization </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-ide-research" id="RSE-taxonomy-ide-research"><strong> Interactive development environments for research </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-provenance-metadata-tools" id="RSE-taxonomy-provenance-metadata-tools"><strong> Provenance and metadata collection tools </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-workflow-managers" id="RSE-taxonomy-workflow-managers"><strong> Workflow managers </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-communication-tools" id="RSE-taxonomy-communication-tools"><strong> Communication tools or platforms </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-helper-libraries" id="RSE-taxonomy-helper-libraries"><strong> Formatting, indexing, or other small helper libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-infrastructure" id="RSE-taxonomy-infrastructure"><strong> Infrastructure </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-operating-systems" id="RSE-taxonomy-operating-systems"><strong> Operating systems </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-package-management" id="RSE-taxonomy-package-management"><strong> Package Management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-personal-scheduling-task-management" id="RSE-taxonomy-personal-scheduling-task-management"><strong> Personal scheduling and task management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-testing" id="RSE-taxonomy-testing"><strong> Testing </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-text-editors-ides" id="RSE-taxonomy-text-editors-ides"><strong> Text editors and integrated development environments </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-version-control" id="RSE-taxonomy-version-control"><strong> Version control </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-virtualization" id="RSE-taxonomy-virtualization"><strong> Virtualization technologies </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-application-programming-interfaces" id="RSE-taxonomy-application-programming-interfaces"><strong> Application Programming Interfaces </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-databases" id="RSE-taxonomy-databases"><strong> Databases </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-frameworks" id="RSE-taxonomy-frameworks"><strong> Frameworks </strong>
+                 </label></td>
+	      </tr>
+	     
+	    </tbody>
+	  </table>
+	</div>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+    </div>
+  </div>
+  </form>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   count = 0
+   body = "%23%23%20Taxonomy%0A"
+   var repo_id;
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name == "repo_uid") {
+          repo_id = item.value;
+      } else if (item.value == "on") {
+          count +=1
+          body += ("%20-%20%5Bx%5D%20" + item.name + "%0A")
+      }  
+   });
+
+   if (count == 0) {
+      alert("Please select one or more categories!")
+   } else {
+       body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+       console.log(body)
+       url = "https://github.com/rseng/software/issues/new?labels=taxonomy&title=[TAXONOMY]&body=" + body
+       console.log(url)
+       document.location = url
+   }
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/GOALS-survey/CAFE/annotate-criteria/index.html b/docs/repository/github/GOALS-survey/CAFE/annotate-criteria/index.html
new file mode 100644
index 000000000..baabae74f
--- /dev/null
+++ b/docs/repository/github/GOALS-survey/CAFE/annotate-criteria/index.html
@@ -0,0 +1,169 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria for github/GOALS-survey/CAFE</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+td {
+  font-size:17px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+          <div class="row">
+            <div class="col-md-12">
+<div style="padding:20px">
+  <h3>What do you think about <strong><a target="_blank" href="https://github.com/GOALS-survey/CAFE">github/GOALS-survey/CAFE</strong></a>
+  <a href="https://github.com/GOALS-survey/CAFE" target="_blank"><img src="https://avatars.githubusercontent.com/u/121973992?v=4" style="max-height:200px; float:right"></a> 
+</h3>
+  <p><strong>Spectral decomposition that works for astronomical data</strong></p> 
+  <p style="font-style:italic; color: darkred;">If you don't know an answer, don't answer it!</p>
+</div>
+  <br>
+
+  <form method="GET">
+  <table class="table table-bordered">
+    <colgroup>
+      <col width="50%">
+      <col width="50%">
+    </colgroup>
+    <thead>
+    <th>Question</th>
+    <th>Your Response</th>
+    </thead>
+    <tbody>
+     <input type="hidden" name="repo_uid" value="https://github.com/GOALS-survey/CAFE">
+    <tr>
+      <td>Would taking away the software be a detriment to research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been cited?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for a particular domain?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Was the software created with intention to solve a research question?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been used by researchers?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr>
+    </tbody>
+  </table>
+
+  <br>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+      <i class="glyphicon glyphicon-question-sign" style="font-size:20px; color:#428bca; cursor:pointer" title="Your submission will be posted as a new GitHub issue, with automation to update the database."></i>
+    </div>
+  </div>
+  </form>
+            </div>
+	</div>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   body = "%23%23%20Criteria%0A"
+   var repo_id
+
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name.startsWith("RSE")) {
+          if (item.value == "yes") {
+              body += ("%20-%20%5Bx%5D%20criteria-" + item.name + "%0A")
+          } else if (item.value == "no") {
+              body += ("%20-%20%5B%20%5D%20criteria-" + item.name + "%0A")
+          }
+      } else if (item.name == "repo_uid") {
+          repo_id = item.value;
+      }
+   });
+   
+   body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+   console.log(body)
+   url = "https://github.com/rseng/software/issues/new?labels=criteria&title=[CRITERIA]&body=" + body
+   console.log(url)
+   document.location = url
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/GOALS-survey/CAFE/annotate-taxonomy/index.html b/docs/repository/github/GOALS-survey/CAFE/annotate-taxonomy/index.html
new file mode 100644
index 000000000..dcbc621bb
--- /dev/null
+++ b/docs/repository/github/GOALS-survey/CAFE/annotate-taxonomy/index.html
@@ -0,0 +1,254 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <h2><a target="_blank" href="https://github.com/GOALS-survey/CAFE">github/GOALS-survey/CAFE</a></h2>
+      <p>How would you categorize this software? Choose more than one. See <a href="https://rseng.github.io/rseng/tag/#block-taxonomy" target="_blank">examples</a> and <a href="https://rseng.github.io/rseng/taxonomy-circle/" target="_blank">visual</a></p>
+      <p>Your submission will be posted as a new GitHub issue, with automation to update the database.</p>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+         <form method="GET"">
+         <input type="hidden" name="repo_uid" value="https://github.com/GOALS-survey/CAFE">
+         <input type="hidden" name="username" value="None">
+	  <table class="table">
+	    <tbody>
+	      
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-analysis" id="RSE-taxonomy-analysis"><strong> Domain-specific analysis software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-domain-hardware" id="RSE-taxonomy-domain-hardware"><strong> Domain-specific hardware </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-optimized" id="RSE-taxonomy-optimized"><strong> Domain-specific optimized software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-data-collection" id="RSE-taxonomy-data-collection"><strong> Data collection </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-numerical-libraries" id="RSE-taxonomy-numerical-libraries"><strong> Numerical libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-visualization" id="RSE-taxonomy-visualization"><strong> Visualization </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-ide-research" id="RSE-taxonomy-ide-research"><strong> Interactive development environments for research </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-provenance-metadata-tools" id="RSE-taxonomy-provenance-metadata-tools"><strong> Provenance and metadata collection tools </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-workflow-managers" id="RSE-taxonomy-workflow-managers"><strong> Workflow managers </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-communication-tools" id="RSE-taxonomy-communication-tools"><strong> Communication tools or platforms </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-helper-libraries" id="RSE-taxonomy-helper-libraries"><strong> Formatting, indexing, or other small helper libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-infrastructure" id="RSE-taxonomy-infrastructure"><strong> Infrastructure </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-operating-systems" id="RSE-taxonomy-operating-systems"><strong> Operating systems </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-package-management" id="RSE-taxonomy-package-management"><strong> Package Management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-personal-scheduling-task-management" id="RSE-taxonomy-personal-scheduling-task-management"><strong> Personal scheduling and task management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-testing" id="RSE-taxonomy-testing"><strong> Testing </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-text-editors-ides" id="RSE-taxonomy-text-editors-ides"><strong> Text editors and integrated development environments </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-version-control" id="RSE-taxonomy-version-control"><strong> Version control </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-virtualization" id="RSE-taxonomy-virtualization"><strong> Virtualization technologies </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-application-programming-interfaces" id="RSE-taxonomy-application-programming-interfaces"><strong> Application Programming Interfaces </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-databases" id="RSE-taxonomy-databases"><strong> Databases </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-frameworks" id="RSE-taxonomy-frameworks"><strong> Frameworks </strong>
+                 </label></td>
+	      </tr>
+	     
+	    </tbody>
+	  </table>
+	</div>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+    </div>
+  </div>
+  </form>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   count = 0
+   body = "%23%23%20Taxonomy%0A"
+   var repo_id;
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name == "repo_uid") {
+          repo_id = item.value;
+      } else if (item.value == "on") {
+          count +=1
+          body += ("%20-%20%5Bx%5D%20" + item.name + "%0A")
+      }  
+   });
+
+   if (count == 0) {
+      alert("Please select one or more categories!")
+   } else {
+       body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+       console.log(body)
+       url = "https://github.com/rseng/software/issues/new?labels=taxonomy&title=[TAXONOMY]&body=" + body
+       console.log(url)
+       document.location = url
+   }
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/JKoblitz/DSMZCellDive/annotate-criteria/index.html b/docs/repository/github/JKoblitz/DSMZCellDive/annotate-criteria/index.html
new file mode 100644
index 000000000..e04ac08c3
--- /dev/null
+++ b/docs/repository/github/JKoblitz/DSMZCellDive/annotate-criteria/index.html
@@ -0,0 +1,169 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria for github/JKoblitz/DSMZCellDive</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+td {
+  font-size:17px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+          <div class="row">
+            <div class="col-md-12">
+<div style="padding:20px">
+  <h3>What do you think about <strong><a target="_blank" href="https://github.com/JKoblitz/DSMZCellDive">github/JKoblitz/DSMZCellDive</strong></a>
+  <a href="https://github.com/JKoblitz/DSMZCellDive" target="_blank"><img src="https://avatars.githubusercontent.com/u/22150395?v=4" style="max-height:200px; float:right"></a> 
+</h3>
+  <p><strong>None</strong></p> 
+  <p style="font-style:italic; color: darkred;">If you don't know an answer, don't answer it!</p>
+</div>
+  <br>
+
+  <form method="GET">
+  <table class="table table-bordered">
+    <colgroup>
+      <col width="50%">
+      <col width="50%">
+    </colgroup>
+    <thead>
+    <th>Question</th>
+    <th>Your Response</th>
+    </thead>
+    <tbody>
+     <input type="hidden" name="repo_uid" value="https://github.com/JKoblitz/DSMZCellDive">
+    <tr>
+      <td>Would taking away the software be a detriment to research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been cited?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for a particular domain?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Was the software created with intention to solve a research question?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been used by researchers?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr>
+    </tbody>
+  </table>
+
+  <br>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+      <i class="glyphicon glyphicon-question-sign" style="font-size:20px; color:#428bca; cursor:pointer" title="Your submission will be posted as a new GitHub issue, with automation to update the database."></i>
+    </div>
+  </div>
+  </form>
+            </div>
+	</div>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   body = "%23%23%20Criteria%0A"
+   var repo_id
+
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name.startsWith("RSE")) {
+          if (item.value == "yes") {
+              body += ("%20-%20%5Bx%5D%20criteria-" + item.name + "%0A")
+          } else if (item.value == "no") {
+              body += ("%20-%20%5B%20%5D%20criteria-" + item.name + "%0A")
+          }
+      } else if (item.name == "repo_uid") {
+          repo_id = item.value;
+      }
+   });
+   
+   body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+   console.log(body)
+   url = "https://github.com/rseng/software/issues/new?labels=criteria&title=[CRITERIA]&body=" + body
+   console.log(url)
+   document.location = url
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/JKoblitz/DSMZCellDive/annotate-taxonomy/index.html b/docs/repository/github/JKoblitz/DSMZCellDive/annotate-taxonomy/index.html
new file mode 100644
index 000000000..db0c287b8
--- /dev/null
+++ b/docs/repository/github/JKoblitz/DSMZCellDive/annotate-taxonomy/index.html
@@ -0,0 +1,254 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <h2><a target="_blank" href="https://github.com/JKoblitz/DSMZCellDive">github/JKoblitz/DSMZCellDive</a></h2>
+      <p>How would you categorize this software? Choose more than one. See <a href="https://rseng.github.io/rseng/tag/#block-taxonomy" target="_blank">examples</a> and <a href="https://rseng.github.io/rseng/taxonomy-circle/" target="_blank">visual</a></p>
+      <p>Your submission will be posted as a new GitHub issue, with automation to update the database.</p>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+         <form method="GET"">
+         <input type="hidden" name="repo_uid" value="https://github.com/JKoblitz/DSMZCellDive">
+         <input type="hidden" name="username" value="None">
+	  <table class="table">
+	    <tbody>
+	      
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-analysis" id="RSE-taxonomy-analysis"><strong> Domain-specific analysis software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-domain-hardware" id="RSE-taxonomy-domain-hardware"><strong> Domain-specific hardware </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-optimized" id="RSE-taxonomy-optimized"><strong> Domain-specific optimized software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-data-collection" id="RSE-taxonomy-data-collection"><strong> Data collection </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-numerical-libraries" id="RSE-taxonomy-numerical-libraries"><strong> Numerical libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-visualization" id="RSE-taxonomy-visualization"><strong> Visualization </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-ide-research" id="RSE-taxonomy-ide-research"><strong> Interactive development environments for research </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-provenance-metadata-tools" id="RSE-taxonomy-provenance-metadata-tools"><strong> Provenance and metadata collection tools </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-workflow-managers" id="RSE-taxonomy-workflow-managers"><strong> Workflow managers </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-communication-tools" id="RSE-taxonomy-communication-tools"><strong> Communication tools or platforms </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-helper-libraries" id="RSE-taxonomy-helper-libraries"><strong> Formatting, indexing, or other small helper libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-infrastructure" id="RSE-taxonomy-infrastructure"><strong> Infrastructure </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-operating-systems" id="RSE-taxonomy-operating-systems"><strong> Operating systems </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-package-management" id="RSE-taxonomy-package-management"><strong> Package Management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-personal-scheduling-task-management" id="RSE-taxonomy-personal-scheduling-task-management"><strong> Personal scheduling and task management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-testing" id="RSE-taxonomy-testing"><strong> Testing </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-text-editors-ides" id="RSE-taxonomy-text-editors-ides"><strong> Text editors and integrated development environments </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-version-control" id="RSE-taxonomy-version-control"><strong> Version control </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-virtualization" id="RSE-taxonomy-virtualization"><strong> Virtualization technologies </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-application-programming-interfaces" id="RSE-taxonomy-application-programming-interfaces"><strong> Application Programming Interfaces </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-databases" id="RSE-taxonomy-databases"><strong> Databases </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-frameworks" id="RSE-taxonomy-frameworks"><strong> Frameworks </strong>
+                 </label></td>
+	      </tr>
+	     
+	    </tbody>
+	  </table>
+	</div>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+    </div>
+  </div>
+  </form>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   count = 0
+   body = "%23%23%20Taxonomy%0A"
+   var repo_id;
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name == "repo_uid") {
+          repo_id = item.value;
+      } else if (item.value == "on") {
+          count +=1
+          body += ("%20-%20%5Bx%5D%20" + item.name + "%0A")
+      }  
+   });
+
+   if (count == 0) {
+      alert("Please select one or more categories!")
+   } else {
+       body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+       console.log(body)
+       url = "https://github.com/rseng/software/issues/new?labels=taxonomy&title=[TAXONOMY]&body=" + body
+       console.log(url)
+       document.location = url
+   }
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/Stat-Cook/deident/annotate-criteria/index.html b/docs/repository/github/Stat-Cook/deident/annotate-criteria/index.html
new file mode 100644
index 000000000..d338a6277
--- /dev/null
+++ b/docs/repository/github/Stat-Cook/deident/annotate-criteria/index.html
@@ -0,0 +1,169 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria for github/Stat-Cook/deident</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+td {
+  font-size:17px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+          <div class="row">
+            <div class="col-md-12">
+<div style="padding:20px">
+  <h3>What do you think about <strong><a target="_blank" href="https://github.com/Stat-Cook/deident">github/Stat-Cook/deident</strong></a>
+  <a href="https://github.com/Stat-Cook/deident" target="_blank"><img src="https://avatars.githubusercontent.com/u/51404549?v=4" style="max-height:200px; float:right"></a> 
+</h3>
+  <p><strong>None</strong></p> 
+  <p style="font-style:italic; color: darkred;">If you don't know an answer, don't answer it!</p>
+</div>
+  <br>
+
+  <form method="GET">
+  <table class="table table-bordered">
+    <colgroup>
+      <col width="50%">
+      <col width="50%">
+    </colgroup>
+    <thead>
+    <th>Question</th>
+    <th>Your Response</th>
+    </thead>
+    <tbody>
+     <input type="hidden" name="repo_uid" value="https://github.com/Stat-Cook/deident">
+    <tr>
+      <td>Would taking away the software be a detriment to research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been cited?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for a particular domain?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Was the software created with intention to solve a research question?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been used by researchers?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr>
+    </tbody>
+  </table>
+
+  <br>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+      <i class="glyphicon glyphicon-question-sign" style="font-size:20px; color:#428bca; cursor:pointer" title="Your submission will be posted as a new GitHub issue, with automation to update the database."></i>
+    </div>
+  </div>
+  </form>
+            </div>
+	</div>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   body = "%23%23%20Criteria%0A"
+   var repo_id
+
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name.startsWith("RSE")) {
+          if (item.value == "yes") {
+              body += ("%20-%20%5Bx%5D%20criteria-" + item.name + "%0A")
+          } else if (item.value == "no") {
+              body += ("%20-%20%5B%20%5D%20criteria-" + item.name + "%0A")
+          }
+      } else if (item.name == "repo_uid") {
+          repo_id = item.value;
+      }
+   });
+   
+   body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+   console.log(body)
+   url = "https://github.com/rseng/software/issues/new?labels=criteria&title=[CRITERIA]&body=" + body
+   console.log(url)
+   document.location = url
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/Stat-Cook/deident/annotate-taxonomy/index.html b/docs/repository/github/Stat-Cook/deident/annotate-taxonomy/index.html
new file mode 100644
index 000000000..434162d58
--- /dev/null
+++ b/docs/repository/github/Stat-Cook/deident/annotate-taxonomy/index.html
@@ -0,0 +1,254 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <h2><a target="_blank" href="https://github.com/Stat-Cook/deident">github/Stat-Cook/deident</a></h2>
+      <p>How would you categorize this software? Choose more than one. See <a href="https://rseng.github.io/rseng/tag/#block-taxonomy" target="_blank">examples</a> and <a href="https://rseng.github.io/rseng/taxonomy-circle/" target="_blank">visual</a></p>
+      <p>Your submission will be posted as a new GitHub issue, with automation to update the database.</p>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+         <form method="GET"">
+         <input type="hidden" name="repo_uid" value="https://github.com/Stat-Cook/deident">
+         <input type="hidden" name="username" value="None">
+	  <table class="table">
+	    <tbody>
+	      
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-analysis" id="RSE-taxonomy-analysis"><strong> Domain-specific analysis software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-domain-hardware" id="RSE-taxonomy-domain-hardware"><strong> Domain-specific hardware </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-optimized" id="RSE-taxonomy-optimized"><strong> Domain-specific optimized software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-data-collection" id="RSE-taxonomy-data-collection"><strong> Data collection </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-numerical-libraries" id="RSE-taxonomy-numerical-libraries"><strong> Numerical libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-visualization" id="RSE-taxonomy-visualization"><strong> Visualization </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-ide-research" id="RSE-taxonomy-ide-research"><strong> Interactive development environments for research </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-provenance-metadata-tools" id="RSE-taxonomy-provenance-metadata-tools"><strong> Provenance and metadata collection tools </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-workflow-managers" id="RSE-taxonomy-workflow-managers"><strong> Workflow managers </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-communication-tools" id="RSE-taxonomy-communication-tools"><strong> Communication tools or platforms </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-helper-libraries" id="RSE-taxonomy-helper-libraries"><strong> Formatting, indexing, or other small helper libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-infrastructure" id="RSE-taxonomy-infrastructure"><strong> Infrastructure </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-operating-systems" id="RSE-taxonomy-operating-systems"><strong> Operating systems </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-package-management" id="RSE-taxonomy-package-management"><strong> Package Management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-personal-scheduling-task-management" id="RSE-taxonomy-personal-scheduling-task-management"><strong> Personal scheduling and task management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-testing" id="RSE-taxonomy-testing"><strong> Testing </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-text-editors-ides" id="RSE-taxonomy-text-editors-ides"><strong> Text editors and integrated development environments </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-version-control" id="RSE-taxonomy-version-control"><strong> Version control </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-virtualization" id="RSE-taxonomy-virtualization"><strong> Virtualization technologies </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-application-programming-interfaces" id="RSE-taxonomy-application-programming-interfaces"><strong> Application Programming Interfaces </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-databases" id="RSE-taxonomy-databases"><strong> Databases </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-frameworks" id="RSE-taxonomy-frameworks"><strong> Frameworks </strong>
+                 </label></td>
+	      </tr>
+	     
+	    </tbody>
+	  </table>
+	</div>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+    </div>
+  </div>
+  </form>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   count = 0
+   body = "%23%23%20Taxonomy%0A"
+   var repo_id;
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name == "repo_uid") {
+          repo_id = item.value;
+      } else if (item.value == "on") {
+          count +=1
+          body += ("%20-%20%5Bx%5D%20" + item.name + "%0A")
+      }  
+   });
+
+   if (count == 0) {
+      alert("Please select one or more categories!")
+   } else {
+       body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+       console.log(body)
+       url = "https://github.com/rseng/software/issues/new?labels=taxonomy&title=[TAXONOMY]&body=" + body
+       console.log(url)
+       document.location = url
+   }
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/WSWUP/gridwxcomp/annotate-criteria/index.html b/docs/repository/github/WSWUP/gridwxcomp/annotate-criteria/index.html
new file mode 100644
index 000000000..2dac4ccd2
--- /dev/null
+++ b/docs/repository/github/WSWUP/gridwxcomp/annotate-criteria/index.html
@@ -0,0 +1,169 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria for github/WSWUP/gridwxcomp</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+td {
+  font-size:17px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+          <div class="row">
+            <div class="col-md-12">
+<div style="padding:20px">
+  <h3>What do you think about <strong><a target="_blank" href="https://github.com/WSWUP/gridwxcomp">github/WSWUP/gridwxcomp</strong></a>
+  <a href="https://github.com/WSWUP/gridwxcomp" target="_blank"><img src="https://avatars.githubusercontent.com/u/23201768?v=4" style="max-height:200px; float:right"></a> 
+</h3>
+  <p><strong>Comparison of weather station and gridded climate datasets</strong></p> 
+  <p style="font-style:italic; color: darkred;">If you don't know an answer, don't answer it!</p>
+</div>
+  <br>
+
+  <form method="GET">
+  <table class="table table-bordered">
+    <colgroup>
+      <col width="50%">
+      <col width="50%">
+    </colgroup>
+    <thead>
+    <th>Question</th>
+    <th>Your Response</th>
+    </thead>
+    <tbody>
+     <input type="hidden" name="repo_uid" value="https://github.com/WSWUP/gridwxcomp">
+    <tr>
+      <td>Would taking away the software be a detriment to research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been cited?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for a particular domain?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Was the software created with intention to solve a research question?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been used by researchers?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr>
+    </tbody>
+  </table>
+
+  <br>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+      <i class="glyphicon glyphicon-question-sign" style="font-size:20px; color:#428bca; cursor:pointer" title="Your submission will be posted as a new GitHub issue, with automation to update the database."></i>
+    </div>
+  </div>
+  </form>
+            </div>
+	</div>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   body = "%23%23%20Criteria%0A"
+   var repo_id
+
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name.startsWith("RSE")) {
+          if (item.value == "yes") {
+              body += ("%20-%20%5Bx%5D%20criteria-" + item.name + "%0A")
+          } else if (item.value == "no") {
+              body += ("%20-%20%5B%20%5D%20criteria-" + item.name + "%0A")
+          }
+      } else if (item.name == "repo_uid") {
+          repo_id = item.value;
+      }
+   });
+   
+   body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+   console.log(body)
+   url = "https://github.com/rseng/software/issues/new?labels=criteria&title=[CRITERIA]&body=" + body
+   console.log(url)
+   document.location = url
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/WSWUP/gridwxcomp/annotate-taxonomy/index.html b/docs/repository/github/WSWUP/gridwxcomp/annotate-taxonomy/index.html
new file mode 100644
index 000000000..780f93286
--- /dev/null
+++ b/docs/repository/github/WSWUP/gridwxcomp/annotate-taxonomy/index.html
@@ -0,0 +1,254 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <h2><a target="_blank" href="https://github.com/WSWUP/gridwxcomp">github/WSWUP/gridwxcomp</a></h2>
+      <p>How would you categorize this software? Choose more than one. See <a href="https://rseng.github.io/rseng/tag/#block-taxonomy" target="_blank">examples</a> and <a href="https://rseng.github.io/rseng/taxonomy-circle/" target="_blank">visual</a></p>
+      <p>Your submission will be posted as a new GitHub issue, with automation to update the database.</p>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+         <form method="GET"">
+         <input type="hidden" name="repo_uid" value="https://github.com/WSWUP/gridwxcomp">
+         <input type="hidden" name="username" value="None">
+	  <table class="table">
+	    <tbody>
+	      
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-analysis" id="RSE-taxonomy-analysis"><strong> Domain-specific analysis software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-domain-hardware" id="RSE-taxonomy-domain-hardware"><strong> Domain-specific hardware </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-optimized" id="RSE-taxonomy-optimized"><strong> Domain-specific optimized software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-data-collection" id="RSE-taxonomy-data-collection"><strong> Data collection </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-numerical-libraries" id="RSE-taxonomy-numerical-libraries"><strong> Numerical libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-visualization" id="RSE-taxonomy-visualization"><strong> Visualization </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-ide-research" id="RSE-taxonomy-ide-research"><strong> Interactive development environments for research </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-provenance-metadata-tools" id="RSE-taxonomy-provenance-metadata-tools"><strong> Provenance and metadata collection tools </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-workflow-managers" id="RSE-taxonomy-workflow-managers"><strong> Workflow managers </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-communication-tools" id="RSE-taxonomy-communication-tools"><strong> Communication tools or platforms </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-helper-libraries" id="RSE-taxonomy-helper-libraries"><strong> Formatting, indexing, or other small helper libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-infrastructure" id="RSE-taxonomy-infrastructure"><strong> Infrastructure </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-operating-systems" id="RSE-taxonomy-operating-systems"><strong> Operating systems </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-package-management" id="RSE-taxonomy-package-management"><strong> Package Management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-personal-scheduling-task-management" id="RSE-taxonomy-personal-scheduling-task-management"><strong> Personal scheduling and task management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-testing" id="RSE-taxonomy-testing"><strong> Testing </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-text-editors-ides" id="RSE-taxonomy-text-editors-ides"><strong> Text editors and integrated development environments </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-version-control" id="RSE-taxonomy-version-control"><strong> Version control </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-virtualization" id="RSE-taxonomy-virtualization"><strong> Virtualization technologies </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-application-programming-interfaces" id="RSE-taxonomy-application-programming-interfaces"><strong> Application Programming Interfaces </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-databases" id="RSE-taxonomy-databases"><strong> Databases </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-frameworks" id="RSE-taxonomy-frameworks"><strong> Frameworks </strong>
+                 </label></td>
+	      </tr>
+	     
+	    </tbody>
+	  </table>
+	</div>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+    </div>
+  </div>
+  </form>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   count = 0
+   body = "%23%23%20Taxonomy%0A"
+   var repo_id;
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name == "repo_uid") {
+          repo_id = item.value;
+      } else if (item.value == "on") {
+          count +=1
+          body += ("%20-%20%5Bx%5D%20" + item.name + "%0A")
+      }  
+   });
+
+   if (count == 0) {
+      alert("Please select one or more categories!")
+   } else {
+       body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+       console.log(body)
+       url = "https://github.com/rseng/software/issues/new?labels=taxonomy&title=[TAXONOMY]&body=" + body
+       console.log(url)
+       document.location = url
+   }
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/cvs-health/langfair/annotate-criteria/index.html b/docs/repository/github/cvs-health/langfair/annotate-criteria/index.html
new file mode 100644
index 000000000..b637ca655
--- /dev/null
+++ b/docs/repository/github/cvs-health/langfair/annotate-criteria/index.html
@@ -0,0 +1,169 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria for github/cvs-health/langfair</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+td {
+  font-size:17px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+          <div class="row">
+            <div class="col-md-12">
+<div style="padding:20px">
+  <h3>What do you think about <strong><a target="_blank" href="https://github.com/cvs-health/langfair">github/cvs-health/langfair</strong></a>
+  <a href="https://github.com/cvs-health/langfair" target="_blank"><img src="https://avatars.githubusercontent.com/u/89528242?v=4" style="max-height:200px; float:right"></a> 
+</h3>
+  <p><strong>LangFair is a Python library for conducting use-case level LLM bias and fairness assessments</strong></p> 
+  <p style="font-style:italic; color: darkred;">If you don't know an answer, don't answer it!</p>
+</div>
+  <br>
+
+  <form method="GET">
+  <table class="table table-bordered">
+    <colgroup>
+      <col width="50%">
+      <col width="50%">
+    </colgroup>
+    <thead>
+    <th>Question</th>
+    <th>Your Response</th>
+    </thead>
+    <tbody>
+     <input type="hidden" name="repo_uid" value="https://github.com/cvs-health/langfair">
+    <tr>
+      <td>Would taking away the software be a detriment to research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been cited?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for a particular domain?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Was the software created with intention to solve a research question?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been used by researchers?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr>
+    </tbody>
+  </table>
+
+  <br>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+      <i class="glyphicon glyphicon-question-sign" style="font-size:20px; color:#428bca; cursor:pointer" title="Your submission will be posted as a new GitHub issue, with automation to update the database."></i>
+    </div>
+  </div>
+  </form>
+            </div>
+	</div>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   body = "%23%23%20Criteria%0A"
+   var repo_id
+
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name.startsWith("RSE")) {
+          if (item.value == "yes") {
+              body += ("%20-%20%5Bx%5D%20criteria-" + item.name + "%0A")
+          } else if (item.value == "no") {
+              body += ("%20-%20%5B%20%5D%20criteria-" + item.name + "%0A")
+          }
+      } else if (item.name == "repo_uid") {
+          repo_id = item.value;
+      }
+   });
+   
+   body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+   console.log(body)
+   url = "https://github.com/rseng/software/issues/new?labels=criteria&title=[CRITERIA]&body=" + body
+   console.log(url)
+   document.location = url
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/cvs-health/langfair/annotate-taxonomy/index.html b/docs/repository/github/cvs-health/langfair/annotate-taxonomy/index.html
new file mode 100644
index 000000000..90138e282
--- /dev/null
+++ b/docs/repository/github/cvs-health/langfair/annotate-taxonomy/index.html
@@ -0,0 +1,254 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <h2><a target="_blank" href="https://github.com/cvs-health/langfair">github/cvs-health/langfair</a></h2>
+      <p>How would you categorize this software? Choose more than one. See <a href="https://rseng.github.io/rseng/tag/#block-taxonomy" target="_blank">examples</a> and <a href="https://rseng.github.io/rseng/taxonomy-circle/" target="_blank">visual</a></p>
+      <p>Your submission will be posted as a new GitHub issue, with automation to update the database.</p>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+         <form method="GET"">
+         <input type="hidden" name="repo_uid" value="https://github.com/cvs-health/langfair">
+         <input type="hidden" name="username" value="None">
+	  <table class="table">
+	    <tbody>
+	      
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-analysis" id="RSE-taxonomy-analysis"><strong> Domain-specific analysis software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-domain-hardware" id="RSE-taxonomy-domain-hardware"><strong> Domain-specific hardware </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-optimized" id="RSE-taxonomy-optimized"><strong> Domain-specific optimized software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-data-collection" id="RSE-taxonomy-data-collection"><strong> Data collection </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-numerical-libraries" id="RSE-taxonomy-numerical-libraries"><strong> Numerical libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-visualization" id="RSE-taxonomy-visualization"><strong> Visualization </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-ide-research" id="RSE-taxonomy-ide-research"><strong> Interactive development environments for research </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-provenance-metadata-tools" id="RSE-taxonomy-provenance-metadata-tools"><strong> Provenance and metadata collection tools </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-workflow-managers" id="RSE-taxonomy-workflow-managers"><strong> Workflow managers </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-communication-tools" id="RSE-taxonomy-communication-tools"><strong> Communication tools or platforms </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-helper-libraries" id="RSE-taxonomy-helper-libraries"><strong> Formatting, indexing, or other small helper libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-infrastructure" id="RSE-taxonomy-infrastructure"><strong> Infrastructure </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-operating-systems" id="RSE-taxonomy-operating-systems"><strong> Operating systems </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-package-management" id="RSE-taxonomy-package-management"><strong> Package Management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-personal-scheduling-task-management" id="RSE-taxonomy-personal-scheduling-task-management"><strong> Personal scheduling and task management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-testing" id="RSE-taxonomy-testing"><strong> Testing </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-text-editors-ides" id="RSE-taxonomy-text-editors-ides"><strong> Text editors and integrated development environments </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-version-control" id="RSE-taxonomy-version-control"><strong> Version control </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-virtualization" id="RSE-taxonomy-virtualization"><strong> Virtualization technologies </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-application-programming-interfaces" id="RSE-taxonomy-application-programming-interfaces"><strong> Application Programming Interfaces </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-databases" id="RSE-taxonomy-databases"><strong> Databases </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-frameworks" id="RSE-taxonomy-frameworks"><strong> Frameworks </strong>
+                 </label></td>
+	      </tr>
+	     
+	    </tbody>
+	  </table>
+	</div>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+    </div>
+  </div>
+  </form>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   count = 0
+   body = "%23%23%20Taxonomy%0A"
+   var repo_id;
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name == "repo_uid") {
+          repo_id = item.value;
+      } else if (item.value == "on") {
+          count +=1
+          body += ("%20-%20%5Bx%5D%20" + item.name + "%0A")
+      }  
+   });
+
+   if (count == 0) {
+      alert("Please select one or more categories!")
+   } else {
+       body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+       console.log(body)
+       url = "https://github.com/rseng/software/issues/new?labels=taxonomy&title=[TAXONOMY]&body=" + body
+       console.log(url)
+       document.location = url
+   }
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/danStich/dia/annotate-criteria/index.html b/docs/repository/github/danStich/dia/annotate-criteria/index.html
new file mode 100644
index 000000000..43ca1d350
--- /dev/null
+++ b/docs/repository/github/danStich/dia/annotate-criteria/index.html
@@ -0,0 +1,169 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria for github/danStich/dia</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+td {
+  font-size:17px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+          <div class="row">
+            <div class="col-md-12">
+<div style="padding:20px">
+  <h3>What do you think about <strong><a target="_blank" href="https://github.com/danStich/dia">github/danStich/dia</strong></a>
+  <a href="https://github.com/danStich/dia" target="_blank"><img src="https://avatars.githubusercontent.com/u/36766897?v=4" style="max-height:200px; float:right"></a> 
+</h3>
+  <p><strong>An R package for the National Oceanic and Atmospheric Administration dam impact analysis</strong></p> 
+  <p style="font-style:italic; color: darkred;">If you don't know an answer, don't answer it!</p>
+</div>
+  <br>
+
+  <form method="GET">
+  <table class="table table-bordered">
+    <colgroup>
+      <col width="50%">
+      <col width="50%">
+    </colgroup>
+    <thead>
+    <th>Question</th>
+    <th>Your Response</th>
+    </thead>
+    <tbody>
+     <input type="hidden" name="repo_uid" value="https://github.com/danStich/dia">
+    <tr>
+      <td>Would taking away the software be a detriment to research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been cited?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for a particular domain?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Was the software created with intention to solve a research question?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been used by researchers?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr>
+    </tbody>
+  </table>
+
+  <br>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+      <i class="glyphicon glyphicon-question-sign" style="font-size:20px; color:#428bca; cursor:pointer" title="Your submission will be posted as a new GitHub issue, with automation to update the database."></i>
+    </div>
+  </div>
+  </form>
+            </div>
+	</div>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   body = "%23%23%20Criteria%0A"
+   var repo_id
+
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name.startsWith("RSE")) {
+          if (item.value == "yes") {
+              body += ("%20-%20%5Bx%5D%20criteria-" + item.name + "%0A")
+          } else if (item.value == "no") {
+              body += ("%20-%20%5B%20%5D%20criteria-" + item.name + "%0A")
+          }
+      } else if (item.name == "repo_uid") {
+          repo_id = item.value;
+      }
+   });
+   
+   body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+   console.log(body)
+   url = "https://github.com/rseng/software/issues/new?labels=criteria&title=[CRITERIA]&body=" + body
+   console.log(url)
+   document.location = url
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/danStich/dia/annotate-taxonomy/index.html b/docs/repository/github/danStich/dia/annotate-taxonomy/index.html
new file mode 100644
index 000000000..f97bdaa11
--- /dev/null
+++ b/docs/repository/github/danStich/dia/annotate-taxonomy/index.html
@@ -0,0 +1,254 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <h2><a target="_blank" href="https://github.com/danStich/dia">github/danStich/dia</a></h2>
+      <p>How would you categorize this software? Choose more than one. See <a href="https://rseng.github.io/rseng/tag/#block-taxonomy" target="_blank">examples</a> and <a href="https://rseng.github.io/rseng/taxonomy-circle/" target="_blank">visual</a></p>
+      <p>Your submission will be posted as a new GitHub issue, with automation to update the database.</p>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+         <form method="GET"">
+         <input type="hidden" name="repo_uid" value="https://github.com/danStich/dia">
+         <input type="hidden" name="username" value="None">
+	  <table class="table">
+	    <tbody>
+	      
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-analysis" id="RSE-taxonomy-analysis"><strong> Domain-specific analysis software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-domain-hardware" id="RSE-taxonomy-domain-hardware"><strong> Domain-specific hardware </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-optimized" id="RSE-taxonomy-optimized"><strong> Domain-specific optimized software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-data-collection" id="RSE-taxonomy-data-collection"><strong> Data collection </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-numerical-libraries" id="RSE-taxonomy-numerical-libraries"><strong> Numerical libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-visualization" id="RSE-taxonomy-visualization"><strong> Visualization </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-ide-research" id="RSE-taxonomy-ide-research"><strong> Interactive development environments for research </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-provenance-metadata-tools" id="RSE-taxonomy-provenance-metadata-tools"><strong> Provenance and metadata collection tools </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-workflow-managers" id="RSE-taxonomy-workflow-managers"><strong> Workflow managers </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-communication-tools" id="RSE-taxonomy-communication-tools"><strong> Communication tools or platforms </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-helper-libraries" id="RSE-taxonomy-helper-libraries"><strong> Formatting, indexing, or other small helper libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-infrastructure" id="RSE-taxonomy-infrastructure"><strong> Infrastructure </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-operating-systems" id="RSE-taxonomy-operating-systems"><strong> Operating systems </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-package-management" id="RSE-taxonomy-package-management"><strong> Package Management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-personal-scheduling-task-management" id="RSE-taxonomy-personal-scheduling-task-management"><strong> Personal scheduling and task management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-testing" id="RSE-taxonomy-testing"><strong> Testing </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-text-editors-ides" id="RSE-taxonomy-text-editors-ides"><strong> Text editors and integrated development environments </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-version-control" id="RSE-taxonomy-version-control"><strong> Version control </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-virtualization" id="RSE-taxonomy-virtualization"><strong> Virtualization technologies </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-application-programming-interfaces" id="RSE-taxonomy-application-programming-interfaces"><strong> Application Programming Interfaces </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-databases" id="RSE-taxonomy-databases"><strong> Databases </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-frameworks" id="RSE-taxonomy-frameworks"><strong> Frameworks </strong>
+                 </label></td>
+	      </tr>
+	     
+	    </tbody>
+	  </table>
+	</div>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+    </div>
+  </div>
+  </form>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   count = 0
+   body = "%23%23%20Taxonomy%0A"
+   var repo_id;
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name == "repo_uid") {
+          repo_id = item.value;
+      } else if (item.value == "on") {
+          count +=1
+          body += ("%20-%20%5Bx%5D%20" + item.name + "%0A")
+      }  
+   });
+
+   if (count == 0) {
+      alert("Please select one or more categories!")
+   } else {
+       body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+       console.log(body)
+       url = "https://github.com/rseng/software/issues/new?labels=taxonomy&title=[TAXONOMY]&body=" + body
+       console.log(url)
+       document.location = url
+   }
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/hauselin/ollama-r/annotate-criteria/index.html b/docs/repository/github/hauselin/ollama-r/annotate-criteria/index.html
new file mode 100644
index 000000000..df7fd729a
--- /dev/null
+++ b/docs/repository/github/hauselin/ollama-r/annotate-criteria/index.html
@@ -0,0 +1,169 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria for github/hauselin/ollama-r</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+td {
+  font-size:17px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+          <div class="row">
+            <div class="col-md-12">
+<div style="padding:20px">
+  <h3>What do you think about <strong><a target="_blank" href="https://github.com/hauselin/ollama-r">github/hauselin/ollama-r</strong></a>
+  <a href="https://github.com/hauselin/ollama-r" target="_blank"><img src="https://avatars.githubusercontent.com/u/7620977?v=4" style="max-height:200px; float:right"></a> 
+</h3>
+  <p><strong>R library to run Ollama language models</strong></p> 
+  <p style="font-style:italic; color: darkred;">If you don't know an answer, don't answer it!</p>
+</div>
+  <br>
+
+  <form method="GET">
+  <table class="table table-bordered">
+    <colgroup>
+      <col width="50%">
+      <col width="50%">
+    </colgroup>
+    <thead>
+    <th>Question</th>
+    <th>Your Response</th>
+    </thead>
+    <tbody>
+     <input type="hidden" name="repo_uid" value="https://github.com/hauselin/ollama-r">
+    <tr>
+      <td>Would taking away the software be a detriment to research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been cited?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for a particular domain?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Was the software created with intention to solve a research question?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been used by researchers?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr>
+    </tbody>
+  </table>
+
+  <br>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+      <i class="glyphicon glyphicon-question-sign" style="font-size:20px; color:#428bca; cursor:pointer" title="Your submission will be posted as a new GitHub issue, with automation to update the database."></i>
+    </div>
+  </div>
+  </form>
+            </div>
+	</div>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   body = "%23%23%20Criteria%0A"
+   var repo_id
+
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name.startsWith("RSE")) {
+          if (item.value == "yes") {
+              body += ("%20-%20%5Bx%5D%20criteria-" + item.name + "%0A")
+          } else if (item.value == "no") {
+              body += ("%20-%20%5B%20%5D%20criteria-" + item.name + "%0A")
+          }
+      } else if (item.name == "repo_uid") {
+          repo_id = item.value;
+      }
+   });
+   
+   body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+   console.log(body)
+   url = "https://github.com/rseng/software/issues/new?labels=criteria&title=[CRITERIA]&body=" + body
+   console.log(url)
+   document.location = url
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/hauselin/ollama-r/annotate-taxonomy/index.html b/docs/repository/github/hauselin/ollama-r/annotate-taxonomy/index.html
new file mode 100644
index 000000000..aeda4e6e8
--- /dev/null
+++ b/docs/repository/github/hauselin/ollama-r/annotate-taxonomy/index.html
@@ -0,0 +1,254 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <h2><a target="_blank" href="https://github.com/hauselin/ollama-r">github/hauselin/ollama-r</a></h2>
+      <p>How would you categorize this software? Choose more than one. See <a href="https://rseng.github.io/rseng/tag/#block-taxonomy" target="_blank">examples</a> and <a href="https://rseng.github.io/rseng/taxonomy-circle/" target="_blank">visual</a></p>
+      <p>Your submission will be posted as a new GitHub issue, with automation to update the database.</p>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+         <form method="GET"">
+         <input type="hidden" name="repo_uid" value="https://github.com/hauselin/ollama-r">
+         <input type="hidden" name="username" value="None">
+	  <table class="table">
+	    <tbody>
+	      
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-analysis" id="RSE-taxonomy-analysis"><strong> Domain-specific analysis software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-domain-hardware" id="RSE-taxonomy-domain-hardware"><strong> Domain-specific hardware </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-optimized" id="RSE-taxonomy-optimized"><strong> Domain-specific optimized software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-data-collection" id="RSE-taxonomy-data-collection"><strong> Data collection </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-numerical-libraries" id="RSE-taxonomy-numerical-libraries"><strong> Numerical libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-visualization" id="RSE-taxonomy-visualization"><strong> Visualization </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-ide-research" id="RSE-taxonomy-ide-research"><strong> Interactive development environments for research </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-provenance-metadata-tools" id="RSE-taxonomy-provenance-metadata-tools"><strong> Provenance and metadata collection tools </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-workflow-managers" id="RSE-taxonomy-workflow-managers"><strong> Workflow managers </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-communication-tools" id="RSE-taxonomy-communication-tools"><strong> Communication tools or platforms </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-helper-libraries" id="RSE-taxonomy-helper-libraries"><strong> Formatting, indexing, or other small helper libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-infrastructure" id="RSE-taxonomy-infrastructure"><strong> Infrastructure </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-operating-systems" id="RSE-taxonomy-operating-systems"><strong> Operating systems </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-package-management" id="RSE-taxonomy-package-management"><strong> Package Management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-personal-scheduling-task-management" id="RSE-taxonomy-personal-scheduling-task-management"><strong> Personal scheduling and task management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-testing" id="RSE-taxonomy-testing"><strong> Testing </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-text-editors-ides" id="RSE-taxonomy-text-editors-ides"><strong> Text editors and integrated development environments </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-version-control" id="RSE-taxonomy-version-control"><strong> Version control </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-virtualization" id="RSE-taxonomy-virtualization"><strong> Virtualization technologies </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-application-programming-interfaces" id="RSE-taxonomy-application-programming-interfaces"><strong> Application Programming Interfaces </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-databases" id="RSE-taxonomy-databases"><strong> Databases </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-frameworks" id="RSE-taxonomy-frameworks"><strong> Frameworks </strong>
+                 </label></td>
+	      </tr>
+	     
+	    </tbody>
+	  </table>
+	</div>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+    </div>
+  </div>
+  </form>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   count = 0
+   body = "%23%23%20Taxonomy%0A"
+   var repo_id;
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name == "repo_uid") {
+          repo_id = item.value;
+      } else if (item.value == "on") {
+          count +=1
+          body += ("%20-%20%5Bx%5D%20" + item.name + "%0A")
+      }  
+   });
+
+   if (count == 0) {
+      alert("Please select one or more categories!")
+   } else {
+       body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+       console.log(body)
+       url = "https://github.com/rseng/software/issues/new?labels=taxonomy&title=[TAXONOMY]&body=" + body
+       console.log(url)
+       document.location = url
+   }
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/kreshuklab/plant-seg/annotate-criteria/index.html b/docs/repository/github/kreshuklab/plant-seg/annotate-criteria/index.html
new file mode 100644
index 000000000..e2140503c
--- /dev/null
+++ b/docs/repository/github/kreshuklab/plant-seg/annotate-criteria/index.html
@@ -0,0 +1,169 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria for github/kreshuklab/plant-seg</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+td {
+  font-size:17px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+          <div class="row">
+            <div class="col-md-12">
+<div style="padding:20px">
+  <h3>What do you think about <strong><a target="_blank" href="https://github.com/kreshuklab/plant-seg">github/kreshuklab/plant-seg</strong></a>
+  <a href="https://github.com/kreshuklab/plant-seg" target="_blank"><img src="https://avatars.githubusercontent.com/u/45267108?v=4" style="max-height:200px; float:right"></a> 
+</h3>
+  <p><strong> A tool for cell instance aware segmentation in densely packed 3D volumetric images </strong></p> 
+  <p style="font-style:italic; color: darkred;">If you don't know an answer, don't answer it!</p>
+</div>
+  <br>
+
+  <form method="GET">
+  <table class="table table-bordered">
+    <colgroup>
+      <col width="50%">
+      <col width="50%">
+    </colgroup>
+    <thead>
+    <th>Question</th>
+    <th>Your Response</th>
+    </thead>
+    <tbody>
+     <input type="hidden" name="repo_uid" value="https://github.com/kreshuklab/plant-seg">
+    <tr>
+      <td>Would taking away the software be a detriment to research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been cited?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for a particular domain?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Was the software created with intention to solve a research question?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been used by researchers?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr>
+    </tbody>
+  </table>
+
+  <br>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+      <i class="glyphicon glyphicon-question-sign" style="font-size:20px; color:#428bca; cursor:pointer" title="Your submission will be posted as a new GitHub issue, with automation to update the database."></i>
+    </div>
+  </div>
+  </form>
+            </div>
+	</div>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   body = "%23%23%20Criteria%0A"
+   var repo_id
+
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name.startsWith("RSE")) {
+          if (item.value == "yes") {
+              body += ("%20-%20%5Bx%5D%20criteria-" + item.name + "%0A")
+          } else if (item.value == "no") {
+              body += ("%20-%20%5B%20%5D%20criteria-" + item.name + "%0A")
+          }
+      } else if (item.name == "repo_uid") {
+          repo_id = item.value;
+      }
+   });
+   
+   body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+   console.log(body)
+   url = "https://github.com/rseng/software/issues/new?labels=criteria&title=[CRITERIA]&body=" + body
+   console.log(url)
+   document.location = url
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/kreshuklab/plant-seg/annotate-taxonomy/index.html b/docs/repository/github/kreshuklab/plant-seg/annotate-taxonomy/index.html
new file mode 100644
index 000000000..ae72bf2bc
--- /dev/null
+++ b/docs/repository/github/kreshuklab/plant-seg/annotate-taxonomy/index.html
@@ -0,0 +1,254 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <h2><a target="_blank" href="https://github.com/kreshuklab/plant-seg">github/kreshuklab/plant-seg</a></h2>
+      <p>How would you categorize this software? Choose more than one. See <a href="https://rseng.github.io/rseng/tag/#block-taxonomy" target="_blank">examples</a> and <a href="https://rseng.github.io/rseng/taxonomy-circle/" target="_blank">visual</a></p>
+      <p>Your submission will be posted as a new GitHub issue, with automation to update the database.</p>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+         <form method="GET"">
+         <input type="hidden" name="repo_uid" value="https://github.com/kreshuklab/plant-seg">
+         <input type="hidden" name="username" value="None">
+	  <table class="table">
+	    <tbody>
+	      
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-analysis" id="RSE-taxonomy-analysis"><strong> Domain-specific analysis software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-domain-hardware" id="RSE-taxonomy-domain-hardware"><strong> Domain-specific hardware </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-optimized" id="RSE-taxonomy-optimized"><strong> Domain-specific optimized software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-data-collection" id="RSE-taxonomy-data-collection"><strong> Data collection </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-numerical-libraries" id="RSE-taxonomy-numerical-libraries"><strong> Numerical libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-visualization" id="RSE-taxonomy-visualization"><strong> Visualization </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-ide-research" id="RSE-taxonomy-ide-research"><strong> Interactive development environments for research </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-provenance-metadata-tools" id="RSE-taxonomy-provenance-metadata-tools"><strong> Provenance and metadata collection tools </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-workflow-managers" id="RSE-taxonomy-workflow-managers"><strong> Workflow managers </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-communication-tools" id="RSE-taxonomy-communication-tools"><strong> Communication tools or platforms </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-helper-libraries" id="RSE-taxonomy-helper-libraries"><strong> Formatting, indexing, or other small helper libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-infrastructure" id="RSE-taxonomy-infrastructure"><strong> Infrastructure </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-operating-systems" id="RSE-taxonomy-operating-systems"><strong> Operating systems </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-package-management" id="RSE-taxonomy-package-management"><strong> Package Management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-personal-scheduling-task-management" id="RSE-taxonomy-personal-scheduling-task-management"><strong> Personal scheduling and task management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-testing" id="RSE-taxonomy-testing"><strong> Testing </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-text-editors-ides" id="RSE-taxonomy-text-editors-ides"><strong> Text editors and integrated development environments </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-version-control" id="RSE-taxonomy-version-control"><strong> Version control </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-virtualization" id="RSE-taxonomy-virtualization"><strong> Virtualization technologies </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-application-programming-interfaces" id="RSE-taxonomy-application-programming-interfaces"><strong> Application Programming Interfaces </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-databases" id="RSE-taxonomy-databases"><strong> Databases </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-frameworks" id="RSE-taxonomy-frameworks"><strong> Frameworks </strong>
+                 </label></td>
+	      </tr>
+	     
+	    </tbody>
+	  </table>
+	</div>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+    </div>
+  </div>
+  </form>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   count = 0
+   body = "%23%23%20Taxonomy%0A"
+   var repo_id;
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name == "repo_uid") {
+          repo_id = item.value;
+      } else if (item.value == "on") {
+          count +=1
+          body += ("%20-%20%5Bx%5D%20" + item.name + "%0A")
+      }  
+   });
+
+   if (count == 0) {
+      alert("Please select one or more categories!")
+   } else {
+       body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+       console.log(body)
+       url = "https://github.com/rseng/software/issues/new?labels=taxonomy&title=[TAXONOMY]&body=" + body
+       console.log(url)
+       document.location = url
+   }
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/labcbb/SqueezeCall/annotate-criteria/index.html b/docs/repository/github/labcbb/SqueezeCall/annotate-criteria/index.html
new file mode 100644
index 000000000..a588fb08b
--- /dev/null
+++ b/docs/repository/github/labcbb/SqueezeCall/annotate-criteria/index.html
@@ -0,0 +1,169 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria for github/labcbb/SqueezeCall</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+td {
+  font-size:17px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+          <div class="row">
+            <div class="col-md-12">
+<div style="padding:20px">
+  <h3>What do you think about <strong><a target="_blank" href="https://github.com/labcbb/SqueezeCall">github/labcbb/SqueezeCall</strong></a>
+  <a href="https://github.com/labcbb/SqueezeCall" target="_blank"><img src="https://avatars.githubusercontent.com/u/192578463?v=4" style="max-height:200px; float:right"></a> 
+</h3>
+  <p><strong>None</strong></p> 
+  <p style="font-style:italic; color: darkred;">If you don't know an answer, don't answer it!</p>
+</div>
+  <br>
+
+  <form method="GET">
+  <table class="table table-bordered">
+    <colgroup>
+      <col width="50%">
+      <col width="50%">
+    </colgroup>
+    <thead>
+    <th>Question</th>
+    <th>Your Response</th>
+    </thead>
+    <tbody>
+     <input type="hidden" name="repo_uid" value="https://github.com/labcbb/SqueezeCall">
+    <tr>
+      <td>Would taking away the software be a detriment to research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been cited?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for a particular domain?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Was the software created with intention to solve a research question?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been used by researchers?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr>
+    </tbody>
+  </table>
+
+  <br>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+      <i class="glyphicon glyphicon-question-sign" style="font-size:20px; color:#428bca; cursor:pointer" title="Your submission will be posted as a new GitHub issue, with automation to update the database."></i>
+    </div>
+  </div>
+  </form>
+            </div>
+	</div>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   body = "%23%23%20Criteria%0A"
+   var repo_id
+
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name.startsWith("RSE")) {
+          if (item.value == "yes") {
+              body += ("%20-%20%5Bx%5D%20criteria-" + item.name + "%0A")
+          } else if (item.value == "no") {
+              body += ("%20-%20%5B%20%5D%20criteria-" + item.name + "%0A")
+          }
+      } else if (item.name == "repo_uid") {
+          repo_id = item.value;
+      }
+   });
+   
+   body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+   console.log(body)
+   url = "https://github.com/rseng/software/issues/new?labels=criteria&title=[CRITERIA]&body=" + body
+   console.log(url)
+   document.location = url
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/labcbb/SqueezeCall/annotate-taxonomy/index.html b/docs/repository/github/labcbb/SqueezeCall/annotate-taxonomy/index.html
new file mode 100644
index 000000000..e2bff8aae
--- /dev/null
+++ b/docs/repository/github/labcbb/SqueezeCall/annotate-taxonomy/index.html
@@ -0,0 +1,254 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <h2><a target="_blank" href="https://github.com/labcbb/SqueezeCall">github/labcbb/SqueezeCall</a></h2>
+      <p>How would you categorize this software? Choose more than one. See <a href="https://rseng.github.io/rseng/tag/#block-taxonomy" target="_blank">examples</a> and <a href="https://rseng.github.io/rseng/taxonomy-circle/" target="_blank">visual</a></p>
+      <p>Your submission will be posted as a new GitHub issue, with automation to update the database.</p>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+         <form method="GET"">
+         <input type="hidden" name="repo_uid" value="https://github.com/labcbb/SqueezeCall">
+         <input type="hidden" name="username" value="None">
+	  <table class="table">
+	    <tbody>
+	      
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-analysis" id="RSE-taxonomy-analysis"><strong> Domain-specific analysis software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-domain-hardware" id="RSE-taxonomy-domain-hardware"><strong> Domain-specific hardware </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-optimized" id="RSE-taxonomy-optimized"><strong> Domain-specific optimized software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-data-collection" id="RSE-taxonomy-data-collection"><strong> Data collection </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-numerical-libraries" id="RSE-taxonomy-numerical-libraries"><strong> Numerical libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-visualization" id="RSE-taxonomy-visualization"><strong> Visualization </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-ide-research" id="RSE-taxonomy-ide-research"><strong> Interactive development environments for research </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-provenance-metadata-tools" id="RSE-taxonomy-provenance-metadata-tools"><strong> Provenance and metadata collection tools </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-workflow-managers" id="RSE-taxonomy-workflow-managers"><strong> Workflow managers </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-communication-tools" id="RSE-taxonomy-communication-tools"><strong> Communication tools or platforms </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-helper-libraries" id="RSE-taxonomy-helper-libraries"><strong> Formatting, indexing, or other small helper libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-infrastructure" id="RSE-taxonomy-infrastructure"><strong> Infrastructure </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-operating-systems" id="RSE-taxonomy-operating-systems"><strong> Operating systems </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-package-management" id="RSE-taxonomy-package-management"><strong> Package Management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-personal-scheduling-task-management" id="RSE-taxonomy-personal-scheduling-task-management"><strong> Personal scheduling and task management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-testing" id="RSE-taxonomy-testing"><strong> Testing </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-text-editors-ides" id="RSE-taxonomy-text-editors-ides"><strong> Text editors and integrated development environments </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-version-control" id="RSE-taxonomy-version-control"><strong> Version control </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-virtualization" id="RSE-taxonomy-virtualization"><strong> Virtualization technologies </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-application-programming-interfaces" id="RSE-taxonomy-application-programming-interfaces"><strong> Application Programming Interfaces </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-databases" id="RSE-taxonomy-databases"><strong> Databases </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-frameworks" id="RSE-taxonomy-frameworks"><strong> Frameworks </strong>
+                 </label></td>
+	      </tr>
+	     
+	    </tbody>
+	  </table>
+	</div>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+    </div>
+  </div>
+  </form>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   count = 0
+   body = "%23%23%20Taxonomy%0A"
+   var repo_id;
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name == "repo_uid") {
+          repo_id = item.value;
+      } else if (item.value == "on") {
+          count +=1
+          body += ("%20-%20%5Bx%5D%20" + item.name + "%0A")
+      }  
+   });
+
+   if (count == 0) {
+      alert("Please select one or more categories!")
+   } else {
+       body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+       console.log(body)
+       url = "https://github.com/rseng/software/issues/new?labels=taxonomy&title=[TAXONOMY]&body=" + body
+       console.log(url)
+       document.location = url
+   }
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/leonardlab/COMET/annotate-criteria/index.html b/docs/repository/github/leonardlab/COMET/annotate-criteria/index.html
new file mode 100644
index 000000000..69cfb6073
--- /dev/null
+++ b/docs/repository/github/leonardlab/COMET/annotate-criteria/index.html
@@ -0,0 +1,169 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria for github/leonardlab/COMET</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+td {
+  font-size:17px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+          <div class="row">
+            <div class="col-md-12">
+<div style="padding:20px">
+  <h3>What do you think about <strong><a target="_blank" href="https://github.com/leonardlab/COMET">github/leonardlab/COMET</strong></a>
+  <a href="https://github.com/leonardlab/COMET" target="_blank"><img src="https://avatars.githubusercontent.com/u/46577112?v=4" style="max-height:200px; float:right"></a> 
+</h3>
+  <p><strong>The COMET toolkit for composing customizable genetic programs in mammalian cells</strong></p> 
+  <p style="font-style:italic; color: darkred;">If you don't know an answer, don't answer it!</p>
+</div>
+  <br>
+
+  <form method="GET">
+  <table class="table table-bordered">
+    <colgroup>
+      <col width="50%">
+      <col width="50%">
+    </colgroup>
+    <thead>
+    <th>Question</th>
+    <th>Your Response</th>
+    </thead>
+    <tbody>
+     <input type="hidden" name="repo_uid" value="https://github.com/leonardlab/COMET">
+    <tr>
+      <td>Would taking away the software be a detriment to research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been cited?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for a particular domain?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Was the software created with intention to solve a research question?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been used by researchers?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr>
+    </tbody>
+  </table>
+
+  <br>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+      <i class="glyphicon glyphicon-question-sign" style="font-size:20px; color:#428bca; cursor:pointer" title="Your submission will be posted as a new GitHub issue, with automation to update the database."></i>
+    </div>
+  </div>
+  </form>
+            </div>
+	</div>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   body = "%23%23%20Criteria%0A"
+   var repo_id
+
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name.startsWith("RSE")) {
+          if (item.value == "yes") {
+              body += ("%20-%20%5Bx%5D%20criteria-" + item.name + "%0A")
+          } else if (item.value == "no") {
+              body += ("%20-%20%5B%20%5D%20criteria-" + item.name + "%0A")
+          }
+      } else if (item.name == "repo_uid") {
+          repo_id = item.value;
+      }
+   });
+   
+   body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+   console.log(body)
+   url = "https://github.com/rseng/software/issues/new?labels=criteria&title=[CRITERIA]&body=" + body
+   console.log(url)
+   document.location = url
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/leonardlab/COMET/annotate-taxonomy/index.html b/docs/repository/github/leonardlab/COMET/annotate-taxonomy/index.html
new file mode 100644
index 000000000..3cb230158
--- /dev/null
+++ b/docs/repository/github/leonardlab/COMET/annotate-taxonomy/index.html
@@ -0,0 +1,254 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <h2><a target="_blank" href="https://github.com/leonardlab/COMET">github/leonardlab/COMET</a></h2>
+      <p>How would you categorize this software? Choose more than one. See <a href="https://rseng.github.io/rseng/tag/#block-taxonomy" target="_blank">examples</a> and <a href="https://rseng.github.io/rseng/taxonomy-circle/" target="_blank">visual</a></p>
+      <p>Your submission will be posted as a new GitHub issue, with automation to update the database.</p>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+         <form method="GET"">
+         <input type="hidden" name="repo_uid" value="https://github.com/leonardlab/COMET">
+         <input type="hidden" name="username" value="None">
+	  <table class="table">
+	    <tbody>
+	      
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-analysis" id="RSE-taxonomy-analysis"><strong> Domain-specific analysis software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-domain-hardware" id="RSE-taxonomy-domain-hardware"><strong> Domain-specific hardware </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-optimized" id="RSE-taxonomy-optimized"><strong> Domain-specific optimized software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-data-collection" id="RSE-taxonomy-data-collection"><strong> Data collection </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-numerical-libraries" id="RSE-taxonomy-numerical-libraries"><strong> Numerical libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-visualization" id="RSE-taxonomy-visualization"><strong> Visualization </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-ide-research" id="RSE-taxonomy-ide-research"><strong> Interactive development environments for research </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-provenance-metadata-tools" id="RSE-taxonomy-provenance-metadata-tools"><strong> Provenance and metadata collection tools </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-workflow-managers" id="RSE-taxonomy-workflow-managers"><strong> Workflow managers </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-communication-tools" id="RSE-taxonomy-communication-tools"><strong> Communication tools or platforms </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-helper-libraries" id="RSE-taxonomy-helper-libraries"><strong> Formatting, indexing, or other small helper libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-infrastructure" id="RSE-taxonomy-infrastructure"><strong> Infrastructure </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-operating-systems" id="RSE-taxonomy-operating-systems"><strong> Operating systems </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-package-management" id="RSE-taxonomy-package-management"><strong> Package Management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-personal-scheduling-task-management" id="RSE-taxonomy-personal-scheduling-task-management"><strong> Personal scheduling and task management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-testing" id="RSE-taxonomy-testing"><strong> Testing </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-text-editors-ides" id="RSE-taxonomy-text-editors-ides"><strong> Text editors and integrated development environments </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-version-control" id="RSE-taxonomy-version-control"><strong> Version control </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-virtualization" id="RSE-taxonomy-virtualization"><strong> Virtualization technologies </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-application-programming-interfaces" id="RSE-taxonomy-application-programming-interfaces"><strong> Application Programming Interfaces </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-databases" id="RSE-taxonomy-databases"><strong> Databases </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-frameworks" id="RSE-taxonomy-frameworks"><strong> Frameworks </strong>
+                 </label></td>
+	      </tr>
+	     
+	    </tbody>
+	  </table>
+	</div>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+    </div>
+  </div>
+  </form>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   count = 0
+   body = "%23%23%20Taxonomy%0A"
+   var repo_id;
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name == "repo_uid") {
+          repo_id = item.value;
+      } else if (item.value == "on") {
+          count +=1
+          body += ("%20-%20%5Bx%5D%20" + item.name + "%0A")
+      }  
+   });
+
+   if (count == 0) {
+      alert("Please select one or more categories!")
+   } else {
+       body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+       console.log(body)
+       url = "https://github.com/rseng/software/issues/new?labels=taxonomy&title=[TAXONOMY]&body=" + body
+       console.log(url)
+       document.location = url
+   }
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/lyalpha/pympc/annotate-criteria/index.html b/docs/repository/github/lyalpha/pympc/annotate-criteria/index.html
new file mode 100644
index 000000000..e9509494b
--- /dev/null
+++ b/docs/repository/github/lyalpha/pympc/annotate-criteria/index.html
@@ -0,0 +1,169 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria for github/lyalpha/pympc</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+td {
+  font-size:17px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+          <div class="row">
+            <div class="col-md-12">
+<div style="padding:20px">
+  <h3>What do you think about <strong><a target="_blank" href="https://github.com/Lyalpha/pympc">github/lyalpha/pympc</strong></a>
+  <a href="https://github.com/Lyalpha/pympc" target="_blank"><img src="https://avatars.githubusercontent.com/u/12103194?v=4" style="max-height:200px; float:right"></a> 
+</h3>
+  <p><strong>minor planet checking</strong></p> 
+  <p style="font-style:italic; color: darkred;">If you don't know an answer, don't answer it!</p>
+</div>
+  <br>
+
+  <form method="GET">
+  <table class="table table-bordered">
+    <colgroup>
+      <col width="50%">
+      <col width="50%">
+    </colgroup>
+    <thead>
+    <th>Question</th>
+    <th>Your Response</th>
+    </thead>
+    <tbody>
+     <input type="hidden" name="repo_uid" value="https://github.com/Lyalpha/pympc">
+    <tr>
+      <td>Would taking away the software be a detriment to research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been cited?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for a particular domain?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Was the software created with intention to solve a research question?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been used by researchers?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr>
+    </tbody>
+  </table>
+
+  <br>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+      <i class="glyphicon glyphicon-question-sign" style="font-size:20px; color:#428bca; cursor:pointer" title="Your submission will be posted as a new GitHub issue, with automation to update the database."></i>
+    </div>
+  </div>
+  </form>
+            </div>
+	</div>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   body = "%23%23%20Criteria%0A"
+   var repo_id
+
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name.startsWith("RSE")) {
+          if (item.value == "yes") {
+              body += ("%20-%20%5Bx%5D%20criteria-" + item.name + "%0A")
+          } else if (item.value == "no") {
+              body += ("%20-%20%5B%20%5D%20criteria-" + item.name + "%0A")
+          }
+      } else if (item.name == "repo_uid") {
+          repo_id = item.value;
+      }
+   });
+   
+   body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+   console.log(body)
+   url = "https://github.com/rseng/software/issues/new?labels=criteria&title=[CRITERIA]&body=" + body
+   console.log(url)
+   document.location = url
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/lyalpha/pympc/annotate-taxonomy/index.html b/docs/repository/github/lyalpha/pympc/annotate-taxonomy/index.html
new file mode 100644
index 000000000..7e2162dbe
--- /dev/null
+++ b/docs/repository/github/lyalpha/pympc/annotate-taxonomy/index.html
@@ -0,0 +1,254 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <h2><a target="_blank" href="https://github.com/Lyalpha/pympc">github/lyalpha/pympc</a></h2>
+      <p>How would you categorize this software? Choose more than one. See <a href="https://rseng.github.io/rseng/tag/#block-taxonomy" target="_blank">examples</a> and <a href="https://rseng.github.io/rseng/taxonomy-circle/" target="_blank">visual</a></p>
+      <p>Your submission will be posted as a new GitHub issue, with automation to update the database.</p>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+         <form method="GET"">
+         <input type="hidden" name="repo_uid" value="https://github.com/Lyalpha/pympc">
+         <input type="hidden" name="username" value="None">
+	  <table class="table">
+	    <tbody>
+	      
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-analysis" id="RSE-taxonomy-analysis"><strong> Domain-specific analysis software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-domain-hardware" id="RSE-taxonomy-domain-hardware"><strong> Domain-specific hardware </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-optimized" id="RSE-taxonomy-optimized"><strong> Domain-specific optimized software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-data-collection" id="RSE-taxonomy-data-collection"><strong> Data collection </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-numerical-libraries" id="RSE-taxonomy-numerical-libraries"><strong> Numerical libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-visualization" id="RSE-taxonomy-visualization"><strong> Visualization </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-ide-research" id="RSE-taxonomy-ide-research"><strong> Interactive development environments for research </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-provenance-metadata-tools" id="RSE-taxonomy-provenance-metadata-tools"><strong> Provenance and metadata collection tools </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-workflow-managers" id="RSE-taxonomy-workflow-managers"><strong> Workflow managers </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-communication-tools" id="RSE-taxonomy-communication-tools"><strong> Communication tools or platforms </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-helper-libraries" id="RSE-taxonomy-helper-libraries"><strong> Formatting, indexing, or other small helper libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-infrastructure" id="RSE-taxonomy-infrastructure"><strong> Infrastructure </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-operating-systems" id="RSE-taxonomy-operating-systems"><strong> Operating systems </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-package-management" id="RSE-taxonomy-package-management"><strong> Package Management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-personal-scheduling-task-management" id="RSE-taxonomy-personal-scheduling-task-management"><strong> Personal scheduling and task management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-testing" id="RSE-taxonomy-testing"><strong> Testing </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-text-editors-ides" id="RSE-taxonomy-text-editors-ides"><strong> Text editors and integrated development environments </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-version-control" id="RSE-taxonomy-version-control"><strong> Version control </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-virtualization" id="RSE-taxonomy-virtualization"><strong> Virtualization technologies </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-application-programming-interfaces" id="RSE-taxonomy-application-programming-interfaces"><strong> Application Programming Interfaces </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-databases" id="RSE-taxonomy-databases"><strong> Databases </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-frameworks" id="RSE-taxonomy-frameworks"><strong> Frameworks </strong>
+                 </label></td>
+	      </tr>
+	     
+	    </tbody>
+	  </table>
+	</div>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+    </div>
+  </div>
+  </form>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   count = 0
+   body = "%23%23%20Taxonomy%0A"
+   var repo_id;
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name == "repo_uid") {
+          repo_id = item.value;
+      } else if (item.value == "on") {
+          count +=1
+          body += ("%20-%20%5Bx%5D%20" + item.name + "%0A")
+      }  
+   });
+
+   if (count == 0) {
+      alert("Please select one or more categories!")
+   } else {
+       body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+       console.log(body)
+       url = "https://github.com/rseng/software/issues/new?labels=taxonomy&title=[TAXONOMY]&body=" + body
+       console.log(url)
+       document.location = url
+   }
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/mongibellili/QuantizedSystemSolver.jl/annotate-criteria/index.html b/docs/repository/github/mongibellili/QuantizedSystemSolver.jl/annotate-criteria/index.html
new file mode 100644
index 000000000..54bef23dd
--- /dev/null
+++ b/docs/repository/github/mongibellili/QuantizedSystemSolver.jl/annotate-criteria/index.html
@@ -0,0 +1,169 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria for github/mongibellili/QuantizedSystemSolver.jl</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+td {
+  font-size:17px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+          <div class="row">
+            <div class="col-md-12">
+<div style="padding:20px">
+  <h3>What do you think about <strong><a target="_blank" href="https://github.com/mongibellili/QuantizedSystemSolver.jl">github/mongibellili/QuantizedSystemSolver.jl</strong></a>
+  <a href="https://github.com/mongibellili/QuantizedSystemSolver.jl" target="_blank"><img src="https://avatars.githubusercontent.com/u/59377156?v=4" style="max-height:200px; float:right"></a> 
+</h3>
+  <p><strong>This is an ODE solver that implements the quantized state system methods: An approach that builds the solution by updating the system variables independently.</strong></p> 
+  <p style="font-style:italic; color: darkred;">If you don't know an answer, don't answer it!</p>
+</div>
+  <br>
+
+  <form method="GET">
+  <table class="table table-bordered">
+    <colgroup>
+      <col width="50%">
+      <col width="50%">
+    </colgroup>
+    <thead>
+    <th>Question</th>
+    <th>Your Response</th>
+    </thead>
+    <tbody>
+     <input type="hidden" name="repo_uid" value="https://github.com/mongibellili/QuantizedSystemSolver.jl">
+    <tr>
+      <td>Would taking away the software be a detriment to research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been cited?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for a particular domain?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Was the software created with intention to solve a research question?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been used by researchers?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr>
+    </tbody>
+  </table>
+
+  <br>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+      <i class="glyphicon glyphicon-question-sign" style="font-size:20px; color:#428bca; cursor:pointer" title="Your submission will be posted as a new GitHub issue, with automation to update the database."></i>
+    </div>
+  </div>
+  </form>
+            </div>
+	</div>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   body = "%23%23%20Criteria%0A"
+   var repo_id
+
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name.startsWith("RSE")) {
+          if (item.value == "yes") {
+              body += ("%20-%20%5Bx%5D%20criteria-" + item.name + "%0A")
+          } else if (item.value == "no") {
+              body += ("%20-%20%5B%20%5D%20criteria-" + item.name + "%0A")
+          }
+      } else if (item.name == "repo_uid") {
+          repo_id = item.value;
+      }
+   });
+   
+   body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+   console.log(body)
+   url = "https://github.com/rseng/software/issues/new?labels=criteria&title=[CRITERIA]&body=" + body
+   console.log(url)
+   document.location = url
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/github/mongibellili/QuantizedSystemSolver.jl/annotate-taxonomy/index.html b/docs/repository/github/mongibellili/QuantizedSystemSolver.jl/annotate-taxonomy/index.html
new file mode 100644
index 000000000..36d8f0441
--- /dev/null
+++ b/docs/repository/github/mongibellili/QuantizedSystemSolver.jl/annotate-taxonomy/index.html
@@ -0,0 +1,254 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <h2><a target="_blank" href="https://github.com/mongibellili/QuantizedSystemSolver.jl">github/mongibellili/QuantizedSystemSolver.jl</a></h2>
+      <p>How would you categorize this software? Choose more than one. See <a href="https://rseng.github.io/rseng/tag/#block-taxonomy" target="_blank">examples</a> and <a href="https://rseng.github.io/rseng/taxonomy-circle/" target="_blank">visual</a></p>
+      <p>Your submission will be posted as a new GitHub issue, with automation to update the database.</p>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+         <form method="GET"">
+         <input type="hidden" name="repo_uid" value="https://github.com/mongibellili/QuantizedSystemSolver.jl">
+         <input type="hidden" name="username" value="None">
+	  <table class="table">
+	    <tbody>
+	      
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-analysis" id="RSE-taxonomy-analysis"><strong> Domain-specific analysis software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-domain-hardware" id="RSE-taxonomy-domain-hardware"><strong> Domain-specific hardware </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-optimized" id="RSE-taxonomy-optimized"><strong> Domain-specific optimized software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-data-collection" id="RSE-taxonomy-data-collection"><strong> Data collection </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-numerical-libraries" id="RSE-taxonomy-numerical-libraries"><strong> Numerical libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-visualization" id="RSE-taxonomy-visualization"><strong> Visualization </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-ide-research" id="RSE-taxonomy-ide-research"><strong> Interactive development environments for research </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-provenance-metadata-tools" id="RSE-taxonomy-provenance-metadata-tools"><strong> Provenance and metadata collection tools </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-workflow-managers" id="RSE-taxonomy-workflow-managers"><strong> Workflow managers </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-communication-tools" id="RSE-taxonomy-communication-tools"><strong> Communication tools or platforms </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-helper-libraries" id="RSE-taxonomy-helper-libraries"><strong> Formatting, indexing, or other small helper libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-infrastructure" id="RSE-taxonomy-infrastructure"><strong> Infrastructure </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-operating-systems" id="RSE-taxonomy-operating-systems"><strong> Operating systems </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-package-management" id="RSE-taxonomy-package-management"><strong> Package Management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-personal-scheduling-task-management" id="RSE-taxonomy-personal-scheduling-task-management"><strong> Personal scheduling and task management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-testing" id="RSE-taxonomy-testing"><strong> Testing </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-text-editors-ides" id="RSE-taxonomy-text-editors-ides"><strong> Text editors and integrated development environments </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-version-control" id="RSE-taxonomy-version-control"><strong> Version control </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-virtualization" id="RSE-taxonomy-virtualization"><strong> Virtualization technologies </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-application-programming-interfaces" id="RSE-taxonomy-application-programming-interfaces"><strong> Application Programming Interfaces </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-databases" id="RSE-taxonomy-databases"><strong> Databases </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-frameworks" id="RSE-taxonomy-frameworks"><strong> Frameworks </strong>
+                 </label></td>
+	      </tr>
+	     
+	    </tbody>
+	  </table>
+	</div>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+    </div>
+  </div>
+  </form>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   count = 0
+   body = "%23%23%20Taxonomy%0A"
+   var repo_id;
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name == "repo_uid") {
+          repo_id = item.value;
+      } else if (item.value == "on") {
+          count +=1
+          body += ("%20-%20%5Bx%5D%20" + item.name + "%0A")
+      }  
+   });
+
+   if (count == 0) {
+      alert("Please select one or more categories!")
+   } else {
+       body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+       console.log(body)
+       url = "https://github.com/rseng/software/issues/new?labels=taxonomy&title=[TAXONOMY]&body=" + body
+       console.log(url)
+       document.location = url
+   }
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/gitlab/uit-sfb/metapipe/annotate-criteria/index.html b/docs/repository/gitlab/uit-sfb/metapipe/annotate-criteria/index.html
new file mode 100644
index 000000000..ba2bbe609
--- /dev/null
+++ b/docs/repository/gitlab/uit-sfb/metapipe/annotate-criteria/index.html
@@ -0,0 +1,169 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria for gitlab/uit-sfb/metapipe</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+td {
+  font-size:17px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+          <div class="row">
+            <div class="col-md-12">
+<div style="padding:20px">
+  <h3>What do you think about <strong><a target="_blank" href="https://gitlab.com/uit-sfb/metapipe">gitlab/uit-sfb/metapipe</strong></a>
+  <a href="https://gitlab.com/uit-sfb/metapipe" target="_blank"><img src="https://gitlab.comNone" style="max-height:200px; float:right"></a> 
+</h3>
+  <p><strong>Metapipe based on Nextflow</strong></p> 
+  <p style="font-style:italic; color: darkred;">If you don't know an answer, don't answer it!</p>
+</div>
+  <br>
+
+  <form method="GET">
+  <table class="table table-bordered">
+    <colgroup>
+      <col width="50%">
+      <col width="50%">
+    </colgroup>
+    <thead>
+    <th>Question</th>
+    <th>Your Response</th>
+    </thead>
+    <tbody>
+     <input type="hidden" name="repo_uid" value="https://gitlab.com/uit-sfb/metapipe">
+    <tr>
+      <td>Would taking away the software be a detriment to research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-absence" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been cited?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-citation" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for a particular domain?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-domain-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Was the software created with intention to solve a research question?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-question-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Is the software intended for research?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-research-intention" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr><tr>
+      <td>Has the software been used by researchers?</td>
+      <td>
+        
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="yes"> yes</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value="no"> no</label>
+        <label class="radio-inline"><input type="radio" name="RSE-usage" id="inlineRadio1" value=""> unsure</label>
+      </td>
+    </tr>
+    </tbody>
+  </table>
+
+  <br>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+      <i class="glyphicon glyphicon-question-sign" style="font-size:20px; color:#428bca; cursor:pointer" title="Your submission will be posted as a new GitHub issue, with automation to update the database."></i>
+    </div>
+  </div>
+  </form>
+            </div>
+	</div>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   body = "%23%23%20Criteria%0A"
+   var repo_id
+
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name.startsWith("RSE")) {
+          if (item.value == "yes") {
+              body += ("%20-%20%5Bx%5D%20criteria-" + item.name + "%0A")
+          } else if (item.value == "no") {
+              body += ("%20-%20%5B%20%5D%20criteria-" + item.name + "%0A")
+          }
+      } else if (item.name == "repo_uid") {
+          repo_id = item.value;
+      }
+   });
+   
+   body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+   console.log(body)
+   url = "https://github.com/rseng/software/issues/new?labels=criteria&title=[CRITERIA]&body=" + body
+   console.log(url)
+   document.location = url
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/repository/gitlab/uit-sfb/metapipe/annotate-taxonomy/index.html b/docs/repository/gitlab/uit-sfb/metapipe/annotate-taxonomy/index.html
new file mode 100644
index 000000000..6c9174b1b
--- /dev/null
+++ b/docs/repository/gitlab/uit-sfb/metapipe/annotate-taxonomy/index.html
@@ -0,0 +1,254 @@
+<!DOCTYPE html>
+<html lang="en" >
+<head>
+  <meta charset="UTF-8">
+  <title>Annotate Criteria</title>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css'>
+  <link rel='stylesheet' href='https://maxcdn.bootstrapcdn.com/font-awesome/4.2.0/css/font-awesome.min.css'>
+  <link rel="stylesheet" href="/software/static/css/style.css">
+  <script src="//code.jquery.com/jquery-3.3.1.min.js"></script>
+  <script type="text/javascript" src="//cdnjs.cloudflare.com/ajax/libs/socket.io/1.3.6/socket.io.min.js"></script>
+  <link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/css/toastr.min.css"></link>
+  <script src="//cdnjs.cloudflare.com/ajax/libs/toastr.js/latest/js/toastr.min.js"></script>
+
+</head>
+<body>
+<style>
+.center {
+  margin: auto;
+  width: 50%;
+  padding-top: 130px !important;
+}
+
+.panel-default {
+  border-radius:20px;
+}
+</style>
+<div class='container'>
+  <div class='row'>
+    <div class='col-sm-12'>
+      <br>
+      <h2><a target="_blank" href="https://gitlab.com/uit-sfb/metapipe">gitlab/uit-sfb/metapipe</a></h2>
+      <p>How would you categorize this software? Choose more than one. See <a href="https://rseng.github.io/rseng/tag/#block-taxonomy" target="_blank">examples</a> and <a href="https://rseng.github.io/rseng/taxonomy-circle/" target="_blank">visual</a></p>
+      <p>Your submission will be posted as a new GitHub issue, with automation to update the database.</p>
+      <br>
+      <div class="panel panel-default">
+        <div>
+          <hr> 
+         <form method="GET"">
+         <input type="hidden" name="repo_uid" value="https://gitlab.com/uit-sfb/metapipe">
+         <input type="hidden" name="username" value="None">
+	  <table class="table">
+	    <tbody>
+	      
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-analysis" id="RSE-taxonomy-analysis"><strong> Domain-specific analysis software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-domain-hardware" id="RSE-taxonomy-domain-hardware"><strong> Domain-specific hardware </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkcyan;padding:16px;color:white;"><strong> Domain-specific software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-optimized" id="RSE-taxonomy-optimized"><strong> Domain-specific optimized software </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-data-collection" id="RSE-taxonomy-data-collection"><strong> Data collection </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-numerical-libraries" id="RSE-taxonomy-numerical-libraries"><strong> Numerical libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkblue;padding:16px;color:white;"><strong>Software to directly conduct research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkgoldenrod;padding:16px;color:white;"><strong> General software </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-visualization" id="RSE-taxonomy-visualization"><strong> Visualization </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-ide-research" id="RSE-taxonomy-ide-research"><strong> Interactive development environments for research </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-provenance-metadata-tools" id="RSE-taxonomy-provenance-metadata-tools"><strong> Provenance and metadata collection tools </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:mediumpurple;padding:16px;color:white;"><strong> Explicitly for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-workflow-managers" id="RSE-taxonomy-workflow-managers"><strong> Workflow managers </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-communication-tools" id="RSE-taxonomy-communication-tools"><strong> Communication tools or platforms </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-helper-libraries" id="RSE-taxonomy-helper-libraries"><strong> Formatting, indexing, or other small helper libraries </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-infrastructure" id="RSE-taxonomy-infrastructure"><strong> Infrastructure </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-operating-systems" id="RSE-taxonomy-operating-systems"><strong> Operating systems </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-package-management" id="RSE-taxonomy-package-management"><strong> Package Management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-personal-scheduling-task-management" id="RSE-taxonomy-personal-scheduling-task-management"><strong> Personal scheduling and task management </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-testing" id="RSE-taxonomy-testing"><strong> Testing </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-text-editors-ides" id="RSE-taxonomy-text-editors-ides"><strong> Text editors and integrated development environments </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-version-control" id="RSE-taxonomy-version-control"><strong> Version control </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkmagenta;padding:16px;color:white;"><strong> Incidentally used for research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-virtualization" id="RSE-taxonomy-virtualization"><strong> Virtualization technologies </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-application-programming-interfaces" id="RSE-taxonomy-application-programming-interfaces"><strong> Application Programming Interfaces </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-databases" id="RSE-taxonomy-databases"><strong> Databases </strong>
+                 </label></td>
+	      </tr>
+	     
+		<tr>
+		   <td><span style="background-color:darkgreen;padding:16px;color:white;"><strong>Software to support research </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button><span style="background-color:darkslateblue;padding:16px;color:white;"><strong> Used for research but not explicitly for it </strong></span><button style="padding:12px 4px" class="btn btn-secondary">>></button>
+		   <label class="btn btn-warning" style="font-size:18px; text-align:left;">
+                        <input type="checkbox" name="RSE-taxonomy-frameworks" id="RSE-taxonomy-frameworks"><strong> Frameworks </strong>
+                 </label></td>
+	      </tr>
+	     
+	    </tbody>
+	  </table>
+	</div>
+  
+  <div class="row">
+    <div class="col-md-12">
+      <a href="/software/"><button type="button" id="back-annotate" class="btn btn-primary">< Back</button></a>
+      <button id="next-button" class="btn btn-primary" type="submit">Submit</button>
+    </div>
+  </div>
+  </form>
+
+  <div class="controls">
+    <span style="float:right; margin-right:30px; margin-top:-5px" class="badge badge-primary">database: filesystem</span>
+  </div>
+  <hr>
+</div>
+
+
+  
+
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/jquery/2.1.3/jquery.min.js'></script>
+  <script src='https://maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js'></script>
+  <script src='https://cdnjs.cloudflare.com/ajax/libs/vue/2.5.17/vue.min.js'></script>
+  
+<script>
+$("form").submit(function(event) {
+  
+   count = 0
+   body = "%23%23%20Taxonomy%0A"
+   var repo_id;
+   $.each($(this).serializeArray(), function(index, item) {
+      console.log(item)
+      if (item.name == "repo_uid") {
+          repo_id = item.value;
+      } else if (item.value == "on") {
+          count +=1
+          body += ("%20-%20%5Bx%5D%20" + item.name + "%0A")
+      }  
+   });
+
+   if (count == 0) {
+      alert("Please select one or more categories!")
+   } else {
+       body = "%23%23%20Repository%20%0A" + encodeURIComponent(repo_id) + "%0A%0A" + body 
+       console.log(body)
+       url = "https://github.com/rseng/software/issues/new?labels=taxonomy&title=[TAXONOMY]&body=" + body
+       console.log(url)
+       document.location = url
+   }
+   event.preventDefault();
+});
+</script>
+
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/search/index.html b/docs/search/index.html
index 264ca7d6c..d034817f4 100644
--- a/docs/search/index.html
+++ b/docs/search/index.html
@@ -63,1661 +63,749 @@
 <script>
 window.data = {
 	
-	"gitlab/materials-modeling/calorine": {
-	"id": "gitlab/materials-modeling/calorine",
-	"title": "gitlab/materials-modeling/calorine",
-	"url": " https://rseng.github.io/software/repository/gitlab/materials-modeling/calorine",
-	"content": "[A python tool box for GPUMD simulations](https://calorine.materialsmodeling.org/)"
-	},
-	"gitlab/esa/pyxel": {
-	"id": "gitlab/esa/pyxel",
-	"title": "gitlab/esa/pyxel",
-	"url": " https://rseng.github.io/software/repository/gitlab/esa/pyxel",
-	"content": "Pyxel is a general detector simulation framework. An easy-to-use framework that can simulate a variety of imaging detector effects combined on images (e.g. radiation and optical effects, noises) made by CCD or CMOS-based detectors."
-	},
-	"gitlab/gmamon/MAMPOSSt": {
-	"id": "gitlab/gmamon/MAMPOSSt",
-	"title": "gitlab/gmamon/MAMPOSSt",
-	"url": " https://rseng.github.io/software/repository/gitlab/gmamon/MAMPOSSt",
-	"content": "None"
-	},
-	"gitlab/remikz/nccmp": {
-	"id": "gitlab/remikz/nccmp",
-	"title": "gitlab/remikz/nccmp",
-	"url": " https://rseng.github.io/software/repository/gitlab/remikz/nccmp",
-	"content": "nccmp - Compare 2 NetCDF files. "
-	},
-	"gitlab/sissopp_developers/sissopp": {
-	"id": "gitlab/sissopp_developers/sissopp",
-	"title": "gitlab/sissopp_developers/sissopp",
-	"url": " https://rseng.github.io/software/repository/gitlab/sissopp_developers/sissopp",
-	"content": "C++ implementation of sisso."
-	},
-	"gitlab/InspectorCell/inspectorcell": {
-	"id": "gitlab/InspectorCell/inspectorcell",
-	"title": "gitlab/InspectorCell/inspectorcell",
-	"url": " https://rseng.github.io/software/repository/gitlab/InspectorCell/inspectorcell",
-	"content": "InspectorCell provides an efficient workflow and graphical interface to generate high-quality training datasets from
-highly multiplexed microscopy images."
-	},
-	"gitlab/open-darts/open-darts": {
-	"id": "gitlab/open-darts/open-darts",
-	"title": "gitlab/open-darts/open-darts",
-	"url": " https://rseng.github.io/software/repository/gitlab/open-darts/open-darts",
-	"content": "The DARTS framework is designed for forward and inverse modeling in geo-energy applications."
-	},
-	"gitlab/cirad-apps/phylostems": {
-	"id": "gitlab/cirad-apps/phylostems",
-	"title": "gitlab/cirad-apps/phylostems",
-	"url": " https://rseng.github.io/software/repository/gitlab/cirad-apps/phylostems",
-	"content": "**phylostems** is a graphical tool developped by CIRAD (UMR PVBMT) to explore temporal signal at various evolutionary scales in heterochronous nucleic acid sequences datasets."
-	},
-	"gitlab/aroffringa/aoflagger": {
-	"id": "gitlab/aroffringa/aoflagger",
-	"title": "gitlab/aroffringa/aoflagger",
-	"url": " https://rseng.github.io/software/repository/gitlab/aroffringa/aoflagger",
-	"content": "The AOFlagger is a tool that can find and remove radio-frequency interference (RFI) in radio astronomical observations. It can make use of Lua scripts to make flagging strategies flexible, and the tools are applicable to a wide set of telescopes."
-	},
-	"gitlab/aroffringa/wsclean": {
-	"id": "gitlab/aroffringa/wsclean",
-	"title": "gitlab/aroffringa/wsclean",
-	"url": " https://rseng.github.io/software/repository/gitlab/aroffringa/wsclean",
-	"content": "WSClean (w-stacking clean) is a fast generic widefield imager. It implements several gridding algorithms and offers fully-automated multi-scale multi-frequency deconvolution. Manual: https://wsclean.readthedocs.io/"
-	},
-	"gitlab/picos-api/picos": {
-	"id": "gitlab/picos-api/picos",
-	"title": "gitlab/picos-api/picos",
-	"url": " https://rseng.github.io/software/repository/gitlab/picos-api/picos",
-	"content": "A Python interface to conic optimization solvers."
-	},
-	"gitlab/eduardo-vitral/balrogo": {
-	"id": "gitlab/eduardo-vitral/balrogo",
-	"title": "gitlab/eduardo-vitral/balrogo",
-	"url": " https://rseng.github.io/software/repository/gitlab/eduardo-vitral/balrogo",
-	"content": "Bayesian Astrometric Likelihood Recovery of Galactic Objects"
-	},
-	"gitlab/libreumg/dataquier": {
-	"id": "gitlab/libreumg/dataquier",
-	"title": "gitlab/libreumg/dataquier",
-	"url": " https://rseng.github.io/software/repository/gitlab/libreumg/dataquier",
-	"content": ""
-	},
-	"gitlab/davidtourigny/dynamic-fba": {
-	"id": "gitlab/davidtourigny/dynamic-fba",
-	"title": "gitlab/davidtourigny/dynamic-fba",
-	"url": " https://rseng.github.io/software/repository/gitlab/davidtourigny/dynamic-fba",
-	"content": ""
-	},
-	"gitlab/emd-dev/emd": {
-	"id": "gitlab/emd-dev/emd",
-	"title": "gitlab/emd-dev/emd",
-	"url": " https://rseng.github.io/software/repository/gitlab/emd-dev/emd",
-	"content": "Empirical Mode Decomposition in Python
-
-&lt;a href=&#34;https://gitlab.com/ajquinn/emd/commits/master&#34;&gt;&lt;img alt=&#34;pipeline status&#34; src=&#34;https://gitlab.com/ajquinn/emd/badges/master/pipeline.svg&#34; /&gt;&lt;/a&gt;"
-	},
-	"gitlab/mainlabwsu/bims": {
-	"id": "gitlab/mainlabwsu/bims",
-	"title": "gitlab/mainlabwsu/bims",
-	"url": " https://rseng.github.io/software/repository/gitlab/mainlabwsu/bims",
-	"content": "BIMS"
-	},
-	"gitlab/chjordan/sslf": {
-	"id": "gitlab/chjordan/sslf",
-	"title": "gitlab/chjordan/sslf",
-	"url": " https://rseng.github.io/software/repository/gitlab/chjordan/sslf",
-	"content": "Simple Spectral Line Finder"
-	},
-	"gitlab/ezlab/busco": {
-	"id": "gitlab/ezlab/busco",
-	"title": "gitlab/ezlab/busco",
-	"url": " https://rseng.github.io/software/repository/gitlab/ezlab/busco",
-	"content": "Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs (BUSCO)"
-	},
-	"gitlab/paulklemm_PHD/proteinortho": {
-	"id": "gitlab/paulklemm_PHD/proteinortho",
-	"title": "gitlab/paulklemm_PHD/proteinortho",
-	"url": " https://rseng.github.io/software/repository/gitlab/paulklemm_PHD/proteinortho",
-	"content": "Proteinortho is a tool to detect orthologous genes within different species. [(Download)](https://gitlab.com/paulklemm_PHD/proteinortho/-/archive/master/proteinortho-master.tar.gz)"
-	},
-	"gitlab/qc-devs/aqcnes": {
-	"id": "gitlab/qc-devs/aqcnes",
-	"title": "gitlab/qc-devs/aqcnes",
-	"url": " https://rseng.github.io/software/repository/gitlab/qc-devs/aqcnes",
-	"content": "Mirror of https://gitlab.ethz.ch/mechanics-and-materials/aqcnes/"
-	},
-	"gitlab/sevecekp/sph": {
-	"id": "gitlab/sevecekp/sph",
-	"title": "gitlab/sevecekp/sph",
-	"url": " https://rseng.github.io/software/repository/gitlab/sevecekp/sph",
-	"content": "Library and graphical tools for running SPH and N-body simulations."
-	},
-	"gitlab/elsi_project/elsi_interface": {
-	"id": "gitlab/elsi_project/elsi_interface",
-	"title": "gitlab/elsi_project/elsi_interface",
-	"url": " https://rseng.github.io/software/repository/gitlab/elsi_project/elsi_interface",
-	"content": "ELSI:  A software interface designed for electronic structure codes to connect with ELPA, libOMM, PEXSI, EigenExa, SLEPc, NTPoly, BSEPACK, LAPACK, MAGMA, and other solver libraries."
-	},
-	"gitlab/mobse/source-code": {
-	"id": "gitlab/mobse/source-code",
-	"title": "gitlab/mobse/source-code",
-	"url": " https://rseng.github.io/software/repository/gitlab/mobse/source-code",
-	"content": "None"
-	},
-	"gitlab/ChemBioHub/tpmap": {
-	"id": "gitlab/ChemBioHub/tpmap",
-	"title": "gitlab/ChemBioHub/tpmap",
-	"url": " https://rseng.github.io/software/repository/gitlab/ChemBioHub/tpmap",
-	"content": "Thermal Profiling Meltome Analysis Program"
-	},
-	"gitlab/project-dare/dare-platform": {
-	"id": "gitlab/project-dare/dare-platform",
-	"title": "gitlab/project-dare/dare-platform",
-	"url": " https://rseng.github.io/software/repository/gitlab/project-dare/dare-platform",
-	"content": ""
-	},
-	"gitlab/fibreglass/pivc": {
-	"id": "gitlab/fibreglass/pivc",
-	"title": "gitlab/fibreglass/pivc",
-	"url": " https://rseng.github.io/software/repository/gitlab/fibreglass/pivc",
-	"content": "None"
-	},
-	"gitlab/german.tischler/libmaus2": {
-	"id": "gitlab/german.tischler/libmaus2",
-	"title": "gitlab/german.tischler/libmaus2",
-	"url": " https://rseng.github.io/software/repository/gitlab/german.tischler/libmaus2",
-	"content": "collection of data structures and algorithms"
-	},
-	"gitlab/german.tischler/biobambam2": {
-	"id": "gitlab/german.tischler/biobambam2",
-	"title": "gitlab/german.tischler/biobambam2",
-	"url": " https://rseng.github.io/software/repository/gitlab/german.tischler/biobambam2",
-	"content": "Tools for early stage alignment file processing"
-	},
-	"gitlab/ampere2/metalwalls": {
-	"id": "gitlab/ampere2/metalwalls",
-	"title": "gitlab/ampere2/metalwalls",
-	"url": " https://rseng.github.io/software/repository/gitlab/ampere2/metalwalls",
-	"content": ""
-	},
-	"gitlab/Molcas/OpenMolcas": {
-	"id": "gitlab/Molcas/OpenMolcas",
-	"title": "gitlab/Molcas/OpenMolcas",
-	"url": " https://rseng.github.io/software/repository/gitlab/Molcas/OpenMolcas",
-	"content": "OpenMolcas is a quantum chemistry software package.
-
-The key feature of OpenMolcas is the multiconfigurational approach to the electronic structure."
-	},
-	"gitlab/mauricemolli/petitRADTRANS": {
-	"id": "gitlab/mauricemolli/petitRADTRANS",
-	"title": "gitlab/mauricemolli/petitRADTRANS",
-	"url": " https://rseng.github.io/software/repository/gitlab/mauricemolli/petitRADTRANS",
-	"content": "None"
-	},
-	"gitlab/mcfuman/SpectraPy": {
-	"id": "gitlab/mcfuman/SpectraPy",
-	"title": "gitlab/mcfuman/SpectraPy",
-	"url": " https://rseng.github.io/software/repository/gitlab/mcfuman/SpectraPy",
-	"content": "Python module to extract and reduce astronomical spectral data"
-	},
-	"gitlab/chrjan/seq-seq-pan": {
-	"id": "gitlab/chrjan/seq-seq-pan",
-	"title": "gitlab/chrjan/seq-seq-pan",
-	"url": " https://rseng.github.io/software/repository/gitlab/chrjan/seq-seq-pan",
-	"content": "seq-seq-pan is a workflow for the SEQuential alignment of SEQuences to build a PAN-genome data structure and a whole-genome-alignment."
-	},
-	"gitlab/fduchate/predihood": {
-	"id": "gitlab/fduchate/predihood",
-	"title": "gitlab/fduchate/predihood",
-	"url": " https://rseng.github.io/software/repository/gitlab/fduchate/predihood",
-	"content": ""
-	},
-	"gitlab/JuditGG/trumpetplots": {
-	"id": "gitlab/JuditGG/trumpetplots",
-	"title": "gitlab/JuditGG/trumpetplots",
-	"url": " https://rseng.github.io/software/repository/gitlab/JuditGG/trumpetplots",
-	"content": "Rpackage for Trumpet plots"
-	},
-	"gitlab/andrea-tango/ficos": {
-	"id": "gitlab/andrea-tango/ficos",
-	"title": "gitlab/andrea-tango/ficos",
-	"url": " https://rseng.github.io/software/repository/gitlab/andrea-tango/ficos",
-	"content": ""
-	},
-	"gitlab/moerman1/fhi-cc4s": {
-	"id": "gitlab/moerman1/fhi-cc4s",
-	"title": "gitlab/moerman1/fhi-cc4s",
-	"url": " https://rseng.github.io/software/repository/gitlab/moerman1/fhi-cc4s",
-	"content": "This project constitutes the interface between the Fritz Haber Institute ab initio molecular simulations (FHI-aims) and the Coupled Cluster for Solids (CC4S) code developed by Felix Hummel and Adreas Grueneis at the TU Wien. 
-"
-	},
-	"gitlab/petsc/petsc": {
-	"id": "gitlab/petsc/petsc",
-	"title": "gitlab/petsc/petsc",
-	"url": " https://rseng.github.io/software/repository/gitlab/petsc/petsc",
-	"content": "PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations."
-	},
-	"gitlab/magnumpi/magnumpi": {
-	"id": "gitlab/magnumpi/magnumpi",
-	"title": "gitlab/magnumpi/magnumpi",
-	"url": " https://rseng.github.io/software/repository/gitlab/magnumpi/magnumpi",
-	"content": "Potential Integrator"
-	},
-	"gitlab/ags-data-format-wg/ags-python-library": {
-	"id": "gitlab/ags-data-format-wg/ags-python-library",
-	"title": "gitlab/ags-data-format-wg/ags-python-library",
-	"url": " https://rseng.github.io/software/repository/gitlab/ags-data-format-wg/ags-python-library",
-	"content": "A library to read and write AGS files using Pandas DataFrames"
-	},
-	"gitlab/treangenlab/emu": {
-	"id": "gitlab/treangenlab/emu",
-	"title": "gitlab/treangenlab/emu",
-	"url": " https://rseng.github.io/software/repository/gitlab/treangenlab/emu",
-	"content": "EMu is a relative abundance estimator for 16S genomic sequences"
-	},
-	"gitlab/treangenlab/vulcan": {
-	"id": "gitlab/treangenlab/vulcan",
-	"title": "gitlab/treangenlab/vulcan",
-	"url": " https://rseng.github.io/software/repository/gitlab/treangenlab/vulcan",
-	"content": ""
-	},
-	"gitlab/jerrytheo16/exoplanet": {
-	"id": "gitlab/jerrytheo16/exoplanet",
-	"title": "gitlab/jerrytheo16/exoplanet",
-	"url": " https://rseng.github.io/software/repository/gitlab/jerrytheo16/exoplanet",
-	"content": "Desktop-based application to aid in constructing a machine learning model for predictive analysis. The application further allows the model to be evaluated through statistical results and interactive graphs."
-	},
-	"gitlab/jesseds/apav": {
-	"id": "gitlab/jesseds/apav",
-	"title": "gitlab/jesseds/apav",
-	"url": " https://rseng.github.io/software/repository/gitlab/jesseds/apav",
-	"content": "APAV (Atom Probe Analysis and Visualization) is a Python library for the analysis and
-visualization of atom probe tomography experiments."
-	},
-	"gitlab/programgreg/tagginglatencyestimator": {
-	"id": "gitlab/programgreg/tagginglatencyestimator",
-	"title": "gitlab/programgreg/tagginglatencyestimator",
-	"url": " https://rseng.github.io/software/repository/gitlab/programgreg/tagginglatencyestimator",
-	"content": "Software to estimate the latency of the tagging process."
-	},
-	"gitlab/ztzou/phydl": {
-	"id": "gitlab/ztzou/phydl",
-	"title": "gitlab/ztzou/phydl",
-	"url": " https://rseng.github.io/software/repository/gitlab/ztzou/phydl",
-	"content": "Phylogenetics by Deep Learning. A residual neural network for inference of quartet phylogenetic tree topology."
-	},
-	"gitlab/rki_bioinformatics/HiLive2": {
-	"id": "gitlab/rki_bioinformatics/HiLive2",
-	"title": "gitlab/rki_bioinformatics/HiLive2",
-	"url": " https://rseng.github.io/software/repository/gitlab/rki_bioinformatics/HiLive2",
-	"content": "HiLive2 is a read mapping tool that maps Illumina HiSeq (or comparable) reads right in the moment when they are produced. Please create issues for HiLive2 at https://gitlab.com/lokat/HiLive2."
-	},
-	"gitlab/rki_bioinformatics/purple": {
-	"id": "gitlab/rki_bioinformatics/purple",
-	"title": "gitlab/rki_bioinformatics/purple",
-	"url": " https://rseng.github.io/software/repository/gitlab/rki_bioinformatics/purple",
-	"content": "Picking Unique Relevant Peptides for viraL Experiments
-
-Authors: Johanna Lechner [@LechnerJ], Pauline Hiortand Felix Hartkopf [@HartkopfF]
-
-Support: https://gitlab.com/HartkopfF/Purple
-
-Download: https://gitlab.com/HartkopfF/Purple/releases"
-	},
-	"gitlab/rki_bioinformatics/IDeFIX": {
-	"id": "gitlab/rki_bioinformatics/IDeFIX",
-	"title": "gitlab/rki_bioinformatics/IDeFIX",
-	"url": " https://rseng.github.io/software/repository/gitlab/rki_bioinformatics/IDeFIX",
-	"content": "Index checking for improved demultiplexing of NGS data"
-	},
-	"gitlab/vincent-sater/umigen": {
-	"id": "gitlab/vincent-sater/umigen",
-	"title": "gitlab/vincent-sater/umigen",
-	"url": " https://rseng.github.io/software/repository/gitlab/vincent-sater/umigen",
-	"content": "UMI-based reads simulator for variant calling evaluation in paired-end sequencing NGS libraries"
-	},
-	"gitlab/octopus-code/octopus": {
-	"id": "gitlab/octopus-code/octopus",
-	"title": "gitlab/octopus-code/octopus",
-	"url": " https://rseng.github.io/software/repository/gitlab/octopus-code/octopus",
-	"content": "Real-space Time-Dependent Density Functional Theory code"
-	},
-	"gitlab/gpagano/lensinggw": {
-	"id": "gitlab/gpagano/lensinggw",
-	"title": "gitlab/gpagano/lensinggw",
-	"url": " https://rseng.github.io/software/repository/gitlab/gpagano/lensinggw",
-	"content": "None"
-	},
-	"gitlab/pythia-uq/pythia": {
-	"id": "gitlab/pythia-uq/pythia",
-	"title": "gitlab/pythia-uq/pythia",
-	"url": " https://rseng.github.io/software/repository/gitlab/pythia-uq/pythia",
-	"content": "PyThia Uncertainty Quantification Toolbox"
-	},
-	"gitlab/eleonoraalei/exo-mercat-gui": {
-	"id": "gitlab/eleonoraalei/exo-mercat-gui",
-	"title": "gitlab/eleonoraalei/exo-mercat-gui",
-	"url": " https://rseng.github.io/software/repository/gitlab/eleonoraalei/exo-mercat-gui",
-	"content": "The Graphical User Interface of Exo-MerCat."
-	},
-	"gitlab/astron-idg/idg": {
-	"id": "gitlab/astron-idg/idg",
-	"title": "gitlab/astron-idg/idg",
-	"url": " https://rseng.github.io/software/repository/gitlab/astron-idg/idg",
-	"content": "Mirror of git.astron.nl/rd/idg"
-	},
-	"gitlab/burstcube/mhealpy": {
-	"id": "gitlab/burstcube/mhealpy",
-	"title": "gitlab/burstcube/mhealpy",
-	"url": " https://rseng.github.io/software/repository/gitlab/burstcube/mhealpy",
-	"content": "None"
-	},
-	"gitlab/sigcorr/sigcorr": {
-	"id": "gitlab/sigcorr/sigcorr",
-	"title": "gitlab/sigcorr/sigcorr",
-	"url": " https://rseng.github.io/software/repository/gitlab/sigcorr/sigcorr",
-	"content": "None"
-	},
-	"gitlab/permafrostnet/teaspoon": {
-	"id": "gitlab/permafrostnet/teaspoon",
-	"title": "gitlab/permafrostnet/teaspoon",
-	"url": " https://rseng.github.io/software/repository/gitlab/permafrostnet/teaspoon",
-	"content": "Python for permafrost temperature data"
-	},
-	"gitlab/wpettersson/kep_solver": {
-	"id": "gitlab/wpettersson/kep_solver",
-	"title": "gitlab/wpettersson/kep_solver",
-	"url": " https://rseng.github.io/software/repository/gitlab/wpettersson/kep_solver",
-	"content": "A Python package for reading and solving single instances of kidney exchange problems. "
-	},
-	"gitlab/pipe3d/pyPipe3D": {
-	"id": "gitlab/pipe3d/pyPipe3D",
-	"title": "gitlab/pipe3d/pyPipe3D",
-	"url": " https://rseng.github.io/software/repository/gitlab/pipe3d/pyPipe3D",
-	"content": "pyPipe3D is a spectroscopy analysis pipeline which produces coherent, easy to distribute and compare, parameters of the stellar populations and the ionized gas, suited in particular for data from the most recent optical IFS surveys."
-	},
-	"gitlab/dglaeser/fieldcompare": {
-	"id": "gitlab/dglaeser/fieldcompare",
-	"title": "gitlab/dglaeser/fieldcompare",
-	"url": " https://rseng.github.io/software/repository/gitlab/dglaeser/fieldcompare",
-	"content": "Python package with command-line interface to compare field data"
-	},
-	"gitlab/vda-lab/snowflake": {
-	"id": "gitlab/vda-lab/snowflake",
-	"title": "gitlab/vda-lab/snowflake",
-	"url": " https://rseng.github.io/software/repository/gitlab/vda-lab/snowflake",
-	"content": "None"
-	},
-	"gitlab/MartinBeseda/sa-oo-vqe-qiskit": {
-	"id": "gitlab/MartinBeseda/sa-oo-vqe-qiskit",
-	"title": "gitlab/MartinBeseda/sa-oo-vqe-qiskit",
-	"url": " https://rseng.github.io/software/repository/gitlab/MartinBeseda/sa-oo-vqe-qiskit",
-	"content": "Qiskit version of SA-OO-VQE"
-	},
-	"gitlab/kmrajwade/iqrm_apollo": {
-	"id": "gitlab/kmrajwade/iqrm_apollo",
-	"title": "gitlab/kmrajwade/iqrm_apollo",
-	"url": " https://rseng.github.io/software/repository/gitlab/kmrajwade/iqrm_apollo",
-	"content": "A standalone code to clean narrow-band RFI using Inter-Quartile Range Mitigation (IQRM) algorithm. The code works on SIGPROC format data and outputs a cleaned SIGRPOC format file. The output file is compatible with other standard pulsar software."
-	},
-	"gitlab/ffaucher/hawen": {
-	"id": "gitlab/ffaucher/hawen",
-	"title": "gitlab/ffaucher/hawen",
-	"url": " https://rseng.github.io/software/repository/gitlab/ffaucher/hawen",
-	"content": "time-HArmonic Wave modEling and INversion using Hybridizable Discontinuous Galerkin Discretization (hawen). The code is written in Fortran90, for forward and inverse time-harmonic wave problems. It uses mpi and openmp parallelism."
-	},
-	"gitlab/dsbowen/conditional-inference": {
-	"id": "gitlab/dsbowen/conditional-inference",
-	"title": "gitlab/dsbowen/conditional-inference",
-	"url": " https://rseng.github.io/software/repository/gitlab/dsbowen/conditional-inference",
-	"content": "None"
-	},
-	"gitlab/bu_cnio/vulcanspot": {
-	"id": "gitlab/bu_cnio/vulcanspot",
-	"title": "gitlab/bu_cnio/vulcanspot",
-	"url": " https://rseng.github.io/software/repository/gitlab/bu_cnio/vulcanspot",
-	"content": ""
-	},
-	"gitlab/LouisLab/PiVR": {
-	"id": "gitlab/LouisLab/PiVR",
-	"title": "gitlab/LouisLab/PiVR",
-	"url": " https://rseng.github.io/software/repository/gitlab/LouisLab/PiVR",
-	"content": "PiVR has been developed to track a variety of animals in real time and present them with light stimuli. Manual can be found at www.PiVR.org, scientific publication at  https://doi.org/10.1371/journal.pbio.3000712
-"
-	},
-	"gitlab/geekysquirrel/bigx": {
-	"id": "gitlab/geekysquirrel/bigx",
-	"title": "gitlab/geekysquirrel/bigx",
-	"url": " https://rseng.github.io/software/repository/gitlab/geekysquirrel/bigx",
-	"content": "A data visualisation tool for geographic datasets"
-	},
-	"gitlab/chaver/choco-mining": {
-	"id": "gitlab/chaver/choco-mining",
-	"title": "gitlab/chaver/choco-mining",
-	"url": " https://rseng.github.io/software/repository/gitlab/chaver/choco-mining",
-	"content": "Data mining with Choco solver"
-	},
-	"gitlab/mbiagetti/persistent_homology_lss": {
-	"id": "gitlab/mbiagetti/persistent_homology_lss",
-	"title": "gitlab/mbiagetti/persistent_homology_lss",
-	"url": " https://rseng.github.io/software/repository/gitlab/mbiagetti/persistent_homology_lss",
-	"content": "Analyze halo catalogs using persistent homology to constrain cosmological parameters"
-	},
-	"gitlab/casi-project/casi-3d": {
-	"id": "gitlab/casi-project/casi-3d",
-	"title": "gitlab/casi-project/casi-3d",
-	"url": " https://rseng.github.io/software/repository/gitlab/casi-project/casi-3d",
-	"content": "None"
-	},
-	"gitlab/casi-project/casi-2d": {
-	"id": "gitlab/casi-project/casi-2d",
-	"title": "gitlab/casi-project/casi-2d",
-	"url": " https://rseng.github.io/software/repository/gitlab/casi-project/casi-2d",
-	"content": "Identification of  stellar feedback signatures in simulated molecular clouds using methods from deep learning."
-	},
-	"gitlab/aceteam.kaist/ACE-Molecule": {
-	"id": "gitlab/aceteam.kaist/ACE-Molecule",
-	"title": "gitlab/aceteam.kaist/ACE-Molecule",
-	"url": " https://rseng.github.io/software/repository/gitlab/aceteam.kaist/ACE-Molecule",
-	"content": "GitLab repository for ACE-Molecule."
-	},
-	"gitlab/dalton/dalton": {
-	"id": "gitlab/dalton/dalton",
-	"title": "gitlab/dalton/dalton",
-	"url": " https://rseng.github.io/software/repository/gitlab/dalton/dalton",
-	"content": "Public Dalton source code repository."
-	},
-	"gitlab/metafundev/metafun": {
-	"id": "gitlab/metafundev/metafun",
-	"title": "gitlab/metafundev/metafun",
-	"url": " https://rseng.github.io/software/repository/gitlab/metafundev/metafun",
-	"content": ""
-	},
-	"gitlab/pyFBS/pyFBS": {
-	"id": "gitlab/pyFBS/pyFBS",
-	"title": "gitlab/pyFBS/pyFBS",
-	"url": " https://rseng.github.io/software/repository/gitlab/pyFBS/pyFBS",
-	"content": "A Python package for Frequency Based Substructuring and Transfer Path Analysis"
-	},
-	"gitlab/multigris/mgris": {
-	"id": "gitlab/multigris/mgris",
-	"title": "gitlab/multigris/mgris",
-	"url": " https://rseng.github.io/software/repository/gitlab/multigris/mgris",
-	"content": "MULTIGRIS (&#34;mgris&#34;) is a Bayesian multi-dimensional grid search using PyMC to extract the posterior distributions of primary grid parameters and predict unobserved parameters/observables."
-	},
-	"gitlab/joseaher/astroplotlib": {
-	"id": "gitlab/joseaher/astroplotlib",
-	"title": "gitlab/joseaher/astroplotlib",
-	"url": " https://rseng.github.io/software/repository/gitlab/joseaher/astroplotlib",
-	"content": "None"
-	},
-	"gitlab/habermann_lab/phasik": {
-	"id": "gitlab/habermann_lab/phasik",
-	"title": "gitlab/habermann_lab/phasik",
-	"url": " https://rseng.github.io/software/repository/gitlab/habermann_lab/phasik",
-	"content": "Scientific tools for extracting cyclic data via hierarchical clustering"
-	},
-	"gitlab/davidwoodburn/itrm": {
-	"id": "gitlab/davidwoodburn/itrm",
-	"title": "gitlab/davidwoodburn/itrm",
-	"url": " https://rseng.github.io/software/repository/gitlab/davidwoodburn/itrm",
-	"content": "Interactive Terminal Utilities"
-	},
-	"gitlab/clairedavies/sedbys": {
-	"id": "gitlab/clairedavies/sedbys",
-	"title": "gitlab/clairedavies/sedbys",
-	"url": " https://rseng.github.io/software/repository/gitlab/clairedavies/sedbys",
-	"content": "A python-based spectral energy distribution builder for young stars"
-	},
-	"gitlab/jtagusari/hrisk-noisemodelling": {
-	"id": "gitlab/jtagusari/hrisk-noisemodelling",
-	"title": "gitlab/jtagusari/hrisk-noisemodelling",
-	"url": " https://rseng.github.io/software/repository/gitlab/jtagusari/hrisk-noisemodelling",
-	"content": "None"
-	},
-	"gitlab/aegge/comet-emu": {
-	"id": "gitlab/aegge/comet-emu",
-	"title": "gitlab/aegge/comet-emu",
-	"url": " https://rseng.github.io/software/repository/gitlab/aegge/comet-emu",
-	"content": "None"
-	},
-	"gitlab/gims-developers/gims": {
-	"id": "gitlab/gims-developers/gims",
-	"title": "gitlab/gims-developers/gims",
-	"url": " https://rseng.github.io/software/repository/gitlab/gims-developers/gims",
-	"content": "GIMS -- Graphical Interface for Materials Simulations --  is an open-source, browser-based toolbox for electronic structure codes. Try it here: [gims.ms1p.org](https://gims.ms1p.org)"
-	},
-	"gitlab/leelamichaels/Infinity": {
-	"id": "gitlab/leelamichaels/Infinity",
-	"title": "gitlab/leelamichaels/Infinity",
-	"url": " https://rseng.github.io/software/repository/gitlab/leelamichaels/Infinity",
-	"content": "Code Infinity release copy"
-	},
-	"gitlab/leelamichaels/Omega": {
-	"id": "gitlab/leelamichaels/Omega",
-	"title": "gitlab/leelamichaels/Omega",
-	"url": " https://rseng.github.io/software/repository/gitlab/leelamichaels/Omega",
-	"content": "Code Omega release copy"
-	},
-	"gitlab/leelamichaels/Tranquillity": {
-	"id": "gitlab/leelamichaels/Tranquillity",
-	"title": "gitlab/leelamichaels/Tranquillity",
-	"url": " https://rseng.github.io/software/repository/gitlab/leelamichaels/Tranquillity",
-	"content": "Code Tranquillity release copy"
-	},
-	"gitlab/leelamichaels/Elysium": {
-	"id": "gitlab/leelamichaels/Elysium",
-	"title": "gitlab/leelamichaels/Elysium",
-	"url": " https://rseng.github.io/software/repository/gitlab/leelamichaels/Elysium",
-	"content": "Code Elysium release copy"
-	},
-	"gitlab/leelamichaels/Burning_Arrow": {
-	"id": "gitlab/leelamichaels/Burning_Arrow",
-	"title": "gitlab/leelamichaels/Burning_Arrow",
-	"url": " https://rseng.github.io/software/repository/gitlab/leelamichaels/Burning_Arrow",
-	"content": "Code Burning Arrow release copy"
-	},
-	"gitlab/sybreton/apollinaire": {
-	"id": "gitlab/sybreton/apollinaire",
-	"title": "gitlab/sybreton/apollinaire",
-	"url": " https://rseng.github.io/software/repository/gitlab/sybreton/apollinaire",
-	"content": "Python tools for helio- and asteroseismic peakbagging frameworks."
-	},
-	"gitlab/cracklet/cracklet": {
-	"id": "gitlab/cracklet/cracklet",
-	"title": "gitlab/cracklet/cracklet",
-	"url": " https://rseng.github.io/software/repository/gitlab/cracklet/cracklet",
-	"content": "cRacklet is a C++ boundary element library based on a spectral formulation of the elastodynamic wave equations in continuum solids."
-	},
-	"gitlab/robizzard/libcdict": {
-	"id": "gitlab/robizzard/libcdict",
-	"title": "gitlab/robizzard/libcdict",
-	"url": " https://rseng.github.io/software/repository/gitlab/robizzard/libcdict",
-	"content": "A generic associative array, also know as dictionary or hash, library in C, based on uthash and extended to be more user friendly and include integration features such as JSON output."
-	},
-	"gitlab/mule-tools/package-x": {
-	"id": "gitlab/mule-tools/package-x",
-	"title": "gitlab/mule-tools/package-x",
-	"url": " https://rseng.github.io/software/repository/gitlab/mule-tools/package-x",
-	"content": "A re-publication of [Package-X](http://web.archive.org/web/20220619174704/packagex.hepforge.org/). All credit to Hiren Patel!"
-	},
-	"gitlab/RKIBioinformaticsPipelines/QCumber": {
-	"id": "gitlab/RKIBioinformaticsPipelines/QCumber",
-	"title": "gitlab/RKIBioinformaticsPipelines/QCumber",
-	"url": " https://rseng.github.io/software/repository/gitlab/RKIBioinformaticsPipelines/QCumber",
-	"content": "quality control of genomic sequences"
-	},
-	"gitlab/chiemotono/mdcontactcom": {
-	"id": "gitlab/chiemotono/mdcontactcom",
-	"title": "gitlab/chiemotono/mdcontactcom",
-	"url": " https://rseng.github.io/software/repository/gitlab/chiemotono/mdcontactcom",
-	"content": ""
-	},
-	"gitlab/vibes-developers/vibes": {
-	"id": "gitlab/vibes-developers/vibes",
-	"title": "gitlab/vibes-developers/vibes",
-	"url": " https://rseng.github.io/software/repository/gitlab/vibes-developers/vibes",
-	"content": "[FHI-vibes](https://vibes-developers.gitlab.io/vibes/): Vibrational simulations with python powered by ASE and FHI-aims."
-	},
-	"gitlab/ostrokach/proteinsolver": {
-	"id": "gitlab/ostrokach/proteinsolver",
-	"title": "gitlab/ostrokach/proteinsolver",
-	"url": " https://rseng.github.io/software/repository/gitlab/ostrokach/proteinsolver",
-	"content": "Graph neural network capable of generating novel amino acid sequences that fold into proteins with predetermined topologies.
-
-"
-	},
-	"gitlab/mcfrith/last": {
-	"id": "gitlab/mcfrith/last",
-	"title": "gitlab/mcfrith/last",
-	"url": " https://rseng.github.io/software/repository/gitlab/mcfrith/last",
-	"content": "finds &amp; aligns related regions of sequences. LAST is designed for moderately large data (e.g. genomes, DNA reads, proteomes)."
-	},
-	"gitlab/mcfrith/paraclu": {
-	"id": "gitlab/mcfrith/paraclu",
-	"title": "gitlab/mcfrith/paraclu",
-	"url": " https://rseng.github.io/software/repository/gitlab/mcfrith/paraclu",
-	"content": "Parametric clustering of genomic and transcriptomic features"
-	},
-	"gitlab/mcfrith/lamassemble": {
-	"id": "gitlab/mcfrith/lamassemble",
-	"title": "gitlab/mcfrith/lamassemble",
-	"url": " https://rseng.github.io/software/repository/gitlab/mcfrith/lamassemble",
-	"content": "Merges overlapping &#34;long&#34; DNA reads into a consensus sequences"
-	},
-	"gitlab/mcfrith/tantan": {
-	"id": "gitlab/mcfrith/tantan",
-	"title": "gitlab/mcfrith/tantan",
-	"url": " https://rseng.github.io/software/repository/gitlab/mcfrith/tantan",
-	"content": "low complexity and tandem repeat masker for biosequences"
-	},
-	"gitlab/jason-rumengan/pyarma": {
-	"id": "gitlab/jason-rumengan/pyarma",
-	"title": "gitlab/jason-rumengan/pyarma",
-	"url": " https://rseng.github.io/software/repository/gitlab/jason-rumengan/pyarma",
-	"content": "PyArmadillo - linear algebra library for Python with MATLAB-like syntax - https://pyarma.sourceforge.io"
-	},
-	"gitlab/thartwig/asloth": {
-	"id": "gitlab/thartwig/asloth",
-	"title": "gitlab/thartwig/asloth",
-	"url": " https://rseng.github.io/software/repository/gitlab/thartwig/asloth",
-	"content": "Semi-analytical model A-SLOTH (Ancient Stars and Local Observables by Tracing Halos)"
-	},
-	"gitlab/remram44/taguette": {
-	"id": "gitlab/remram44/taguette",
-	"title": "gitlab/remram44/taguette",
-	"url": " https://rseng.github.io/software/repository/gitlab/remram44/taguette",
-	"content": "Free and open source qualitative research tool"
-	},
-	"gitlab/ENKI-portal/ThermoCodegen": {
-	"id": "gitlab/ENKI-portal/ThermoCodegen",
-	"title": "gitlab/ENKI-portal/ThermoCodegen",
-	"url": " https://rseng.github.io/software/repository/gitlab/ENKI-portal/ThermoCodegen",
-	"content": "ThermoCodegen: a python/C++ package for the generation of custom thermodynamic models"
-	},
-	"gitlab/ENKI-portal/vaporock": {
-	"id": "gitlab/ENKI-portal/vaporock",
-	"title": "gitlab/ENKI-portal/vaporock",
-	"url": " https://rseng.github.io/software/repository/gitlab/ENKI-portal/vaporock",
-	"content": "Thermodynamics of vaporized silicate rocks &amp; melts for modeling magma ocean atmospheres and stellar nebula"
-	},
-	"gitlab/ENKI-portal/ThermoEngine": {
-	"id": "gitlab/ENKI-portal/ThermoEngine",
-	"title": "gitlab/ENKI-portal/ThermoEngine",
-	"url": " https://rseng.github.io/software/repository/gitlab/ENKI-portal/ThermoEngine",
-	"content": "Python, C, C++ and Objective C code that Implement thermodynamic properties of stoichiometric phases and solutions.  This is the main code repository of the ENKI project."
-	},
-	"gitlab/cosapp/cosapp": {
-	"id": "gitlab/cosapp/cosapp",
-	"title": "gitlab/cosapp/cosapp",
-	"url": " https://rseng.github.io/software/repository/gitlab/cosapp/cosapp",
-	"content": "CoSApp core package"
-	},
-	"gitlab/medbio/disgenet2r": {
-	"id": "gitlab/medbio/disgenet2r",
-	"title": "gitlab/medbio/disgenet2r",
-	"url": " https://rseng.github.io/software/repository/gitlab/medbio/disgenet2r",
-	"content": "None"
-	},
-	"gitlab/pvst/asi": {
-	"id": "gitlab/pvst/asi",
-	"title": "gitlab/pvst/asi",
-	"url": " https://rseng.github.io/software/repository/gitlab/pvst/asi",
-	"content": "Atomic Simulations Interface"
-	},
-	"gitlab/AstroVian/bmarxiv": {
-	"id": "gitlab/AstroVian/bmarxiv",
-	"title": "gitlab/AstroVian/bmarxiv",
-	"url": " https://rseng.github.io/software/repository/gitlab/AstroVian/bmarxiv",
-	"content": "None"
-	},
-	"gitlab/etienne.behar/menura": {
-	"id": "gitlab/etienne.behar/menura",
-	"title": "gitlab/etienne.behar/menura",
-	"url": " https://rseng.github.io/software/repository/gitlab/etienne.behar/menura",
-	"content": "Menura is a space plasma simulation code. It is built around a hybrid Particle In Cell (PIC) solver, running on Graphics Processing Units. More informations on https://menura.readthedocs.io"
-	},
-	"gitlab/andreas.andrusch/paipline": {
-	"id": "gitlab/andreas.andrusch/paipline",
-	"title": "gitlab/andreas.andrusch/paipline",
-	"url": " https://rseng.github.io/software/repository/gitlab/andreas.andrusch/paipline",
-	"content": "Pipeline for the Automatic Identification of Pathogens"
-	},
-	"gitlab/rahmannlab/episegmix": {
-	"id": "gitlab/rahmannlab/episegmix",
-	"title": "gitlab/rahmannlab/episegmix",
-	"url": " https://rseng.github.io/software/repository/gitlab/rahmannlab/episegmix",
-	"content": "None"
-	},
-	"gitlab/binary_c/binary_c-python": {
-	"id": "gitlab/binary_c/binary_c-python",
-	"title": "gitlab/binary_c/binary_c-python",
-	"url": " https://rseng.github.io/software/repository/gitlab/binary_c/binary_c-python",
-	"content": "Python module to interface with the binary_c stellar population framework.
-
-The current stable branch is 1.0.0 which you can find in the [releases/1.0.0/2.2.4 branch](https://gitlab.com/binary_c/binary_c-python/-/tree/releases/1.0.0/2.2.4) which works with [binary_c version 2.2.4](https://gitlab.com/binary_c/binary_c/-/tree/development/2.2.4)"
-	},
-	"gitlab/ProjectRHEA/flowsolverrhea": {
-	"id": "gitlab/ProjectRHEA/flowsolverrhea",
-	"title": "gitlab/ProjectRHEA/flowsolverrhea",
-	"url": " https://rseng.github.io/software/repository/gitlab/ProjectRHEA/flowsolverrhea",
-	"content": "RHEA: an open-source Reproducible and Hybrid-architecture flow solver Engineered for Academia"
-	},
-	"gitlab/imoralc/malu-ifs-visualization-tool": {
-	"id": "gitlab/imoralc/malu-ifs-visualization-tool",
-	"title": "gitlab/imoralc/malu-ifs-visualization-tool",
-	"url": " https://rseng.github.io/software/repository/gitlab/imoralc/malu-ifs-visualization-tool",
-	"content": "None"
-	},
-	"gitlab/souvlaki/thalassa": {
-	"id": "gitlab/souvlaki/thalassa",
-	"title": "gitlab/souvlaki/thalassa",
-	"url": " https://rseng.github.io/software/repository/gitlab/souvlaki/thalassa",
-	"content": "None"
-	},
-	"gitlab/polmag/PORTA": {
-	"id": "gitlab/polmag/PORTA",
-	"title": "gitlab/polmag/PORTA",
-	"url": " https://rseng.github.io/software/repository/gitlab/polmag/PORTA",
-	"content": "PORTA: A three-dimensional multilevel radiative transfer code for modeling the intensity and polarization of spectral lines with massively parallel computers"
-	},
-	"gitlab/BioimageInformaticsGroup/openphi": {
-	"id": "gitlab/BioimageInformaticsGroup/openphi",
-	"title": "gitlab/BioimageInformaticsGroup/openphi",
-	"url": " https://rseng.github.io/software/repository/gitlab/BioimageInformaticsGroup/openphi",
-	"content": "Open PatHology Interface - A Python API for accessing iSyntax digital pathology images"
-	},
-	"gitlab/cosmograil/PyCS3": {
-	"id": "gitlab/cosmograil/PyCS3",
-	"title": "gitlab/cosmograil/PyCS3",
-	"url": " https://rseng.github.io/software/repository/gitlab/cosmograil/PyCS3",
-	"content": "PyCS for python 3"
-	},
-	"gitlab/cosmograil/starred": {
-	"id": "gitlab/cosmograil/starred",
-	"title": "gitlab/cosmograil/starred",
-	"url": " https://rseng.github.io/software/repository/gitlab/cosmograil/starred",
-	"content": "A two-channel deconvolution method with Starlet regularization"
-	},
-	"gitlab/loic.cg.rossi/pymiedap": {
-	"id": "gitlab/loic.cg.rossi/pymiedap",
-	"title": "gitlab/loic.cg.rossi/pymiedap",
-	"url": " https://rseng.github.io/software/repository/gitlab/loic.cg.rossi/pymiedap",
-	"content": "PyMieDAP = Python Mie Doubling Adding Program. A radiative transfer code with polarization."
-	},
-	"gitlab/random-quintessence/random-quintessence": {
-	"id": "gitlab/random-quintessence/random-quintessence",
-	"title": "gitlab/random-quintessence/random-quintessence",
-	"url": " https://rseng.github.io/software/repository/gitlab/random-quintessence/random-quintessence",
-	"content": "None"
-	},
-	"github/maxpumperla/hyperas": {
-	"id": "github/maxpumperla/hyperas",
-	"title": "github/maxpumperla/hyperas",
-	"url": " https://rseng.github.io/software/repository/github/maxpumperla/hyperas",
-	"content": "Keras + Hyperopt: A very simple wrapper for convenient hyperparameter optimization"
-	},
-	"github/cwieder/py-ssPA": {
-	"id": "github/cwieder/py-ssPA",
-	"title": "github/cwieder/py-ssPA",
-	"url": " https://rseng.github.io/software/repository/github/cwieder/py-ssPA",
-	"content": "Single sample pathway analysis tools for omics data"
-	},
-	"github/sanjibs/bmcmc": {
-	"id": "github/sanjibs/bmcmc",
-	"title": "github/sanjibs/bmcmc",
-	"url": " https://rseng.github.io/software/repository/github/sanjibs/bmcmc",
-	"content": "MCMC package for Bayesian data analysis"
-	},
-	"github/auckland-cosmo/defrost-mpi": {
-	"id": "github/auckland-cosmo/defrost-mpi",
-	"title": "github/auckland-cosmo/defrost-mpi",
-	"url": " https://rseng.github.io/software/repository/github/auckland-cosmo/defrost-mpi",
-	"content": "MPI version of the defrost code "
-	},
-	"github/auckland-cosmo/PyUltraLight": {
-	"id": "github/auckland-cosmo/PyUltraLight",
-	"title": "github/auckland-cosmo/PyUltraLight",
-	"url": " https://rseng.github.io/software/repository/github/auckland-cosmo/PyUltraLight",
-	"content": "Pseudo-spectral Python code to compute ultralight dark matter dynamics.  "
-	},
-	"github/auckland-cosmo/interp-mc": {
-	"id": "github/auckland-cosmo/interp-mc",
-	"title": "github/auckland-cosmo/interp-mc",
-	"url": " https://rseng.github.io/software/repository/github/auckland-cosmo/interp-mc",
-	"content": "Archival patch to CosmoMC for &#34;interp-mc&#34; paper"
-	},
-	"github/mpievolbio-scicomp/cancer_sim": {
-	"id": "github/mpievolbio-scicomp/cancer_sim",
-	"title": "github/mpievolbio-scicomp/cancer_sim",
-	"url": " https://rseng.github.io/software/repository/github/mpievolbio-scicomp/cancer_sim",
-	"content": "CancerSim: A python3 package for stochastic cancer simulation in 2D."
-	},
-	"github/tkonolige/city2ba": {
-	"id": "github/tkonolige/city2ba",
-	"title": "github/tkonolige/city2ba",
-	"url": " https://rseng.github.io/software/repository/github/tkonolige/city2ba",
-	"content": "Tools for generating synthetic bundle adjustment datasets"
-	},
-	"github/jsobeck/MOOG_SCAT": {
-	"id": "github/jsobeck/MOOG_SCAT",
-	"title": "github/jsobeck/MOOG_SCAT",
-	"url": " https://rseng.github.io/software/repository/github/jsobeck/MOOG_SCAT",
-	"content": "Repository for the latest version of the MOOG_SCAT code"
-	},
-	"github/andresGranadosC/GalRotpy": {
-	"id": "github/andresGranadosC/GalRotpy",
-	"title": "github/andresGranadosC/GalRotpy",
-	"url": " https://rseng.github.io/software/repository/github/andresGranadosC/GalRotpy",
-	"content": "A Python-based tool to parametrize the rotation curve and the gravitational potential of disk-like galaxies"
-	},
-	"github/pezmaster31/bamtools": {
-	"id": "github/pezmaster31/bamtools",
-	"title": "github/pezmaster31/bamtools",
-	"url": " https://rseng.github.io/software/repository/github/pezmaster31/bamtools",
-	"content": "C++ API &amp; command-line toolkit for working with BAM data"
-	},
-	"github/zhouzilu/DENDRO": {
-	"id": "github/zhouzilu/DENDRO",
-	"title": "github/zhouzilu/DENDRO",
-	"url": " https://rseng.github.io/software/repository/github/zhouzilu/DENDRO",
-	"content": "Genetic Heterogeneity Profiling by Single Cell RNA Sequencing "
-	},
-	"github/lukapecnik/NiaAML": {
-	"id": "github/lukapecnik/NiaAML",
-	"title": "github/lukapecnik/NiaAML",
-	"url": " https://rseng.github.io/software/repository/github/lukapecnik/NiaAML",
-	"content": "Python automated machine learning framework."
-	},
-	"github/vbaliga/gaussplotR": {
-	"id": "github/vbaliga/gaussplotR",
-	"title": "github/vbaliga/gaussplotR",
-	"url": " https://rseng.github.io/software/repository/github/vbaliga/gaussplotR",
-	"content": "🔔 Fit, predict, and plot 2D Gaussians in R"
-	},
-	"github/blackrim/phyutility": {
-	"id": "github/blackrim/phyutility",
-	"title": "github/blackrim/phyutility",
-	"url": " https://rseng.github.io/software/repository/github/blackrim/phyutility",
-	"content": "simple analyses or modifications on both phylogenetic trees and data matrices"
-	},
-	"github/astrogilda/mirkwood": {
-	"id": "github/astrogilda/mirkwood",
-	"title": "github/astrogilda/mirkwood",
-	"url": " https://rseng.github.io/software/repository/github/astrogilda/mirkwood",
-	"content": "None"
-	},
-	"github/mudit-jain90/i-SPin": {
-	"id": "github/mudit-jain90/i-SPin",
-	"title": "github/mudit-jain90/i-SPin",
-	"url": " https://rseng.github.io/software/repository/github/mudit-jain90/i-SPin",
-	"content": "A code to simulate multi-component Schrodinger systems (with/without gravity + with/without self interactions) obeying SO(n) symmetry"
-	},
-	"github/QuantEcon/QuantEcon.py": {
-	"id": "github/QuantEcon/QuantEcon.py",
-	"title": "github/QuantEcon/QuantEcon.py",
-	"url": " https://rseng.github.io/software/repository/github/QuantEcon/QuantEcon.py",
-	"content": "A community based Python library for quantitative economics"
-	},
-	"github/ebachelet/pyLIMA": {
-	"id": "github/ebachelet/pyLIMA",
-	"title": "github/ebachelet/pyLIMA",
-	"url": " https://rseng.github.io/software/repository/github/ebachelet/pyLIMA",
-	"content": "None"
-	},
-	"github/iomega/paired-data-form": {
-	"id": "github/iomega/paired-data-form",
-	"title": "github/iomega/paired-data-form",
-	"url": " https://rseng.github.io/software/repository/github/iomega/paired-data-form",
-	"content": "Linking mas spectra and genomic information to discover new chemistry"
-	},
-	"github/iomega/zenodo-upload": {
-	"id": "github/iomega/zenodo-upload",
-	"title": "github/iomega/zenodo-upload",
-	"url": " https://rseng.github.io/software/repository/github/iomega/zenodo-upload",
-	"content": "JS package to create a new version of a Zenodo upload with a file"
-	},
-	"github/iomega/spec2vec": {
-	"id": "github/iomega/spec2vec",
-	"title": "github/iomega/spec2vec",
-	"url": " https://rseng.github.io/software/repository/github/iomega/spec2vec",
-	"content": "Word2Vec based similarity measure of mass spectrometry data."
-	},
-	"github/RitchieLab/hudson": {
-	"id": "github/RitchieLab/hudson",
-	"title": "github/RitchieLab/hudson",
-	"url": " https://rseng.github.io/software/repository/github/RitchieLab/hudson",
-	"content": "An R package for creating mirrored Manhattan plots"
-	},
-	"github/icrar/daliuge": {
-	"id": "github/icrar/daliuge",
-	"title": "github/icrar/daliuge",
-	"url": " https://rseng.github.io/software/repository/github/icrar/daliuge",
-	"content": "The DALiuGE Execution Engine"
-	},
-	"github/mirnylab/cooler": {
-	"id": "github/mirnylab/cooler",
-	"title": "github/mirnylab/cooler",
-	"url": " https://rseng.github.io/software/repository/github/mirnylab/cooler",
-	"content": "is a support library for a sparse, compressed, binary persistent storage format, also called cooler, used to store genomic interaction data, such as Hi-C contact matrices."
-	},
-	"github/mirnylab/pairtools": {
-	"id": "github/mirnylab/pairtools",
-	"title": "github/mirnylab/pairtools",
-	"url": " https://rseng.github.io/software/repository/github/mirnylab/pairtools",
-	"content": "CLI tools to process mapped Hi-C data"
-	},
-	"github/JCGoran/coffe": {
-	"id": "github/JCGoran/coffe",
-	"title": "github/JCGoran/coffe",
-	"url": " https://rseng.github.io/software/repository/github/JCGoran/coffe",
-	"content": "The public repository for the code COFFE"
-	},
-	"github/kristiantcho/flashcurve": {
-	"id": "github/kristiantcho/flashcurve",
-	"title": "github/kristiantcho/flashcurve",
-	"url": " https://rseng.github.io/software/repository/github/kristiantcho/flashcurve",
-	"content": "A python tool for the fast generation of adaptive-binning for lightcurves with Fermi-LAT gamma-ray data using machine learning"
-	},
-	"github/rbrthogan/GAz": {
-	"id": "github/rbrthogan/GAz",
-	"title": "github/rbrthogan/GAz",
-	"url": " https://rseng.github.io/software/repository/github/rbrthogan/GAz",
-	"content": "A genetic algorithm that finds optimal polynomial form to fit to data. "
-	},
-	"github/tldr-group/taufactor": {
-	"id": "github/tldr-group/taufactor",
-	"title": "github/tldr-group/taufactor",
-	"url": " https://rseng.github.io/software/repository/github/tldr-group/taufactor",
-	"content": "TauFactor is a parallelised solver for calculating tortuosity factors from voxel data."
-	},
-	"github/tldr-group/samba-web": {
-	"id": "github/tldr-group/samba-web",
-	"title": "github/tldr-group/samba-web",
-	"url": " https://rseng.github.io/software/repository/github/tldr-group/samba-web",
-	"content": "Local version of samba-web, a trainable segmentation web app with deep learning powered labelling"
-	},
-	"github/shengjin/Nii": {
-	"id": "github/shengjin/Nii",
-	"title": "github/shengjin/Nii",
-	"url": " https://rseng.github.io/software/repository/github/shengjin/Nii",
-	"content": "The Nii code"
-	},
-	"github/zhangrengang/SubPhaser": {
-	"id": "github/zhangrengang/SubPhaser",
-	"title": "github/zhangrengang/SubPhaser",
-	"url": " https://rseng.github.io/software/repository/github/zhangrengang/SubPhaser",
-	"content": "Phase and visualize subgenomes of an allopolyploid or hybrid based on the repetitive kmers."
-	},
-	"github/BenWibking/quokka": {
-	"id": "github/BenWibking/quokka",
-	"title": "github/BenWibking/quokka",
-	"url": " https://rseng.github.io/software/repository/github/BenWibking/quokka",
-	"content": "Two-moment AMR radiation hydrodynamics on GPUs for astrophysics"
-	},
-	"github/light-curve/light-curve": {
-	"id": "github/light-curve/light-curve",
-	"title": "github/light-curve/light-curve",
-	"url": " https://rseng.github.io/software/repository/github/light-curve/light-curve",
-	"content": "Collection of Rust packages for time-series analysis"
+	"github/tsipkens/atems": {
+	"id": "github/tsipkens/atems",
+	"title": "github/tsipkens/atems",
+	"url": " https://rseng.github.io/software/repository/github/tsipkens/atems",
+	"content": "A MATLAB codebase to analyze TEM images of soot, which includes new methods associated with this project and a compilation of other pre-existing methods into a single package."
 	},
-	"github/light-curve/light-curve-python": {
-	"id": "github/light-curve/light-curve-python",
-	"title": "github/light-curve/light-curve-python",
-	"url": " https://rseng.github.io/software/repository/github/light-curve/light-curve-python",
-	"content": "light-curve feature extraction library for Python"
+	"github/asgr/NFWdist": {
+	"id": "github/asgr/NFWdist",
+	"title": "github/asgr/NFWdist",
+	"url": " https://rseng.github.io/software/repository/github/asgr/NFWdist",
+	"content": "Density, distribution function, quantile function and random generation for the 3D NFW profile"
 	},
-	"github/rkiman/wdwarfdate": {
-	"id": "github/rkiman/wdwarfdate",
-	"title": "github/rkiman/wdwarfdate",
-	"url": " https://rseng.github.io/software/repository/github/rkiman/wdwarfdate",
-	"content": "Calculate white dwarfs ages from effective temperature and surface gravity."
+	"github/asgr/ProPane": {
+	"id": "github/asgr/ProPane",
+	"title": "github/asgr/ProPane",
+	"url": " https://rseng.github.io/software/repository/github/asgr/ProPane",
+	"content": "Package of stacking related functions, replacing older Rwcs and ProFound related functions."
 	},
-	"github/eucp-project/storyboards": {
-	"id": "github/eucp-project/storyboards",
-	"title": "github/eucp-project/storyboards",
-	"url": " https://rseng.github.io/software/repository/github/eucp-project/storyboards",
-	"content": "Simple web application to show example use cases with some interactivity. (visitors via old url will be redirected to the website with new url)"
+	"github/asgr/hyper.fit": {
+	"id": "github/asgr/hyper.fit",
+	"title": "github/asgr/hyper.fit",
+	"url": " https://rseng.github.io/software/repository/github/asgr/hyper.fit",
+	"content": "The hyper.fit hyperplane fitting package."
 	},
-	"github/eucp-project/atlas": {
-	"id": "github/eucp-project/atlas",
-	"title": "github/eucp-project/atlas",
-	"url": " https://rseng.github.io/software/repository/github/eucp-project/atlas",
-	"content": "prototype result browser"
+	"github/asgr/ProSpect": {
+	"id": "github/asgr/ProSpect",
+	"title": "github/asgr/ProSpect",
+	"url": " https://rseng.github.io/software/repository/github/asgr/ProSpect",
+	"content": "Spectral Generation Package"
 	},
-	"github/pedronachtigall/ToxCodAn-Genome": {
-	"id": "github/pedronachtigall/ToxCodAn-Genome",
-	"title": "github/pedronachtigall/ToxCodAn-Genome",
-	"url": " https://rseng.github.io/software/repository/github/pedronachtigall/ToxCodAn-Genome",
-	"content": "Toxin genes annotation in genome assembly"
+	"github/asgr/ProFound": {
+	"id": "github/asgr/ProFound",
+	"title": "github/asgr/ProFound",
+	"url": " https://rseng.github.io/software/repository/github/asgr/ProFound",
+	"content": "ProFound source finding and extraction"
 	},
-	"github/r-lib/credentials": {
-	"id": "github/r-lib/credentials",
-	"title": "github/r-lib/credentials",
-	"url": " https://rseng.github.io/software/repository/github/r-lib/credentials",
-	"content": "Tools for Managing SSH and Git Credentials"
+	"github/asgr/Rwcs": {
+	"id": "github/asgr/Rwcs",
+	"title": "github/asgr/Rwcs",
+	"url": " https://rseng.github.io/software/repository/github/asgr/Rwcs",
+	"content": "Interface to C wcslib"
 	},
-	"github/r-lib/gert": {
-	"id": "github/r-lib/gert",
-	"title": "github/r-lib/gert",
-	"url": " https://rseng.github.io/software/repository/github/r-lib/gert",
-	"content": "Simple git client for R"
+	"github/asgr/ProFuse": {
+	"id": "github/asgr/ProFuse",
+	"title": "github/asgr/ProFuse",
+	"url": " https://rseng.github.io/software/repository/github/asgr/ProFuse",
+	"content": "ProFound + ProFit + ProSpect = ProFuse"
 	},
-	"github/lijing28101/maize_pyrpipe": {
-	"id": "github/lijing28101/maize_pyrpipe",
-	"title": "github/lijing28101/maize_pyrpipe",
-	"url": " https://rseng.github.io/software/repository/github/lijing28101/maize_pyrpipe",
-	"content": "None"
+	"github/asgr/celestial": {
+	"id": "github/asgr/celestial",
+	"title": "github/asgr/celestial",
+	"url": " https://rseng.github.io/software/repository/github/asgr/celestial",
+	"content": "celestial R package"
 	},
-	"github/CHES2023/PyMsOfa": {
-	"id": "github/CHES2023/PyMsOfa",
-	"title": "github/CHES2023/PyMsOfa",
-	"url": " https://rseng.github.io/software/repository/github/CHES2023/PyMsOfa",
-	"content": "a Python package for the Standards of Fundamental Astronomy (SOFA) service"
+	"github/asgr/Rfits": {
+	"id": "github/asgr/Rfits",
+	"title": "github/asgr/Rfits",
+	"url": " https://rseng.github.io/software/repository/github/asgr/Rfits",
+	"content": "Rfits stuff"
 	},
-	"github/siavashk/pycpd": {
-	"id": "github/siavashk/pycpd",
-	"title": "github/siavashk/pycpd",
-	"url": " https://rseng.github.io/software/repository/github/siavashk/pycpd",
-	"content": "Pure Numpy Implementation of the Coherent Point Drift Algorithm"
+	"github/mackelab/sbi": {
+	"id": "github/mackelab/sbi",
+	"title": "github/mackelab/sbi",
+	"url": " https://rseng.github.io/software/repository/github/mackelab/sbi",
+	"content": "Simulation-based inference in PyTorch"
 	},
-	"github/Libsharp/libsharp": {
-	"id": "github/Libsharp/libsharp",
-	"title": "github/Libsharp/libsharp",
-	"url": " https://rseng.github.io/software/repository/github/Libsharp/libsharp",
-	"content": "Library for fast spherical harmonic transforms, see http://arxiv.org/abs/1303.4945"
+	"github/agsreejith/CONTROL": {
+	"id": "github/agsreejith/CONTROL",
+	"title": "github/agsreejith/CONTROL",
+	"url": " https://rseng.github.io/software/repository/github/agsreejith/CONTROL",
+	"content": "V1.0 of CUTE data reduction pipeline"
 	},
-	"github/n8thangreen/BCEA": {
-	"id": "github/n8thangreen/BCEA",
-	"title": "github/n8thangreen/BCEA",
-	"url": " https://rseng.github.io/software/repository/github/n8thangreen/BCEA",
-	"content": "Bayesian Cost Effectiveness Analysis. Given the results of a Bayesian model (possibly based on MCMC) in the form of simulations from the posterior distributions of suitable variables of costs and clinical benefits for two or more interventions, produces a health economic evaluation. Compares one of the interventions (the &#34;reference&#34;) to the others (&#34;comparators&#34;). Produces many summary and plots to analyse the results"
+	"github/cosmodesi/pycorr": {
+	"id": "github/cosmodesi/pycorr",
+	"title": "github/cosmodesi/pycorr",
+	"url": " https://rseng.github.io/software/repository/github/cosmodesi/pycorr",
+	"content": "2-pt correlation function estimation"
 	},
-	"github/adamgayoso/totalVI_reproducibility": {
-	"id": "github/adamgayoso/totalVI_reproducibility",
-	"title": "github/adamgayoso/totalVI_reproducibility",
-	"url": " https://rseng.github.io/software/repository/github/adamgayoso/totalVI_reproducibility",
+	"github/pirl-unc/ace": {
+	"id": "github/pirl-unc/ace",
+	"title": "github/pirl-unc/ace",
+	"url": " https://rseng.github.io/software/repository/github/pirl-unc/ace",
 	"content": "None"
 	},
-	"github/aarondotter/iso": {
-	"id": "github/aarondotter/iso",
-	"title": "github/aarondotter/iso",
-	"url": " https://rseng.github.io/software/repository/github/aarondotter/iso",
-	"content": "MESA isochrone code"
+	"github/abelson-lab/smMIP-tools": {
+	"id": "github/abelson-lab/smMIP-tools",
+	"title": "github/abelson-lab/smMIP-tools",
+	"url": " https://rseng.github.io/software/repository/github/abelson-lab/smMIP-tools",
+	"content": "None"
 	},
-	"github/cabb99/open3spn2": {
-	"id": "github/cabb99/open3spn2",
-	"title": "github/cabb99/open3spn2",
-	"url": " https://rseng.github.io/software/repository/github/cabb99/open3spn2",
-	"content": "An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM"
+	"github/SharmaLlama/ticktack": {
+	"id": "github/SharmaLlama/ticktack",
+	"title": "github/SharmaLlama/ticktack",
+	"url": " https://rseng.github.io/software/repository/github/SharmaLlama/ticktack",
+	"content": "An open-source carbon box model implementation built on JAX."
 	},
-	"github/Clinical-Genomics-Umea/fraggler": {
-	"id": "github/Clinical-Genomics-Umea/fraggler",
-	"title": "github/Clinical-Genomics-Umea/fraggler",
-	"url": " https://rseng.github.io/software/repository/github/Clinical-Genomics-Umea/fraggler",
-	"content": "None"
+	"github/lh3/seqtk": {
+	"id": "github/lh3/seqtk",
+	"title": "github/lh3/seqtk",
+	"url": " https://rseng.github.io/software/repository/github/lh3/seqtk",
+	"content": "Toolkit for processing sequences in FASTA/Q formats"
 	},
-	"github/Fermipy/fermipy": {
-	"id": "github/Fermipy/fermipy",
-	"title": "github/Fermipy/fermipy",
-	"url": " https://rseng.github.io/software/repository/github/Fermipy/fermipy",
-	"content": "Fermi-LAT Python Analysis Framework"
+	"github/lh3/bgt": {
+	"id": "github/lh3/bgt",
+	"title": "github/lh3/bgt",
+	"url": " https://rseng.github.io/software/repository/github/lh3/bgt",
+	"content": "Flexible genotype query among 30,000+ samples whole-genome"
 	},
-	"github/VirtualPlanetaryLaboratory/atmos": {
-	"id": "github/VirtualPlanetaryLaboratory/atmos",
-	"title": "github/VirtualPlanetaryLaboratory/atmos",
-	"url": " https://rseng.github.io/software/repository/github/VirtualPlanetaryLaboratory/atmos",
-	"content": "None"
+	"github/lh3/bedtk": {
+	"id": "github/lh3/bedtk",
+	"title": "github/lh3/bedtk",
+	"url": " https://rseng.github.io/software/repository/github/lh3/bedtk",
+	"content": "A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)"
 	},
-	"github/VirtualPlanetaryLaboratory/vplanet": {
-	"id": "github/VirtualPlanetaryLaboratory/vplanet",
-	"title": "github/VirtualPlanetaryLaboratory/vplanet",
-	"url": " https://rseng.github.io/software/repository/github/VirtualPlanetaryLaboratory/vplanet",
-	"content": "The Virtual Planet Simulator"
+	"github/lh3/bfc": {
+	"id": "github/lh3/bfc",
+	"title": "github/lh3/bfc",
+	"url": " https://rseng.github.io/software/repository/github/lh3/bfc",
+	"content": "High-performance error correction for Illumina resequencing data"
 	},
-	"github/dwkim78/ASTRiDE": {
-	"id": "github/dwkim78/ASTRiDE",
-	"title": "github/dwkim78/ASTRiDE",
-	"url": " https://rseng.github.io/software/repository/github/dwkim78/ASTRiDE",
-	"content": "AUTOMATED STREAK DETECTION FOR ASTRONOMICAL IMAGES"
+	"github/lh3/wgsim": {
+	"id": "github/lh3/wgsim",
+	"title": "github/lh3/wgsim",
+	"url": " https://rseng.github.io/software/repository/github/lh3/wgsim",
+	"content": "Reads simulator"
 	},
-	"github/dwkim78/upsilon": {
-	"id": "github/dwkim78/upsilon",
-	"title": "github/dwkim78/upsilon",
-	"url": " https://rseng.github.io/software/repository/github/dwkim78/upsilon",
-	"content": "Automated Classification of Periodic Variable Stars Using Machine Learning"
+	"github/lh3/minimap2": {
+	"id": "github/lh3/minimap2",
+	"title": "github/lh3/minimap2",
+	"url": " https://rseng.github.io/software/repository/github/lh3/minimap2",
+	"content": "A versatile pairwise aligner for genomic and spliced nucleotide sequences"
 	},
-	"github/dwkim78/pdtrend": {
-	"id": "github/dwkim78/pdtrend",
-	"title": "github/dwkim78/pdtrend",
-	"url": " https://rseng.github.io/software/repository/github/dwkim78/pdtrend",
-	"content": "Photometric Detrending Algorithm"
+	"github/lh3/bioawk": {
+	"id": "github/lh3/bioawk",
+	"title": "github/lh3/bioawk",
+	"url": " https://rseng.github.io/software/repository/github/lh3/bioawk",
+	"content": "BWK awk modified for biological data"
 	},
-	"github/artis-mcrt/artis": {
-	"id": "github/artis-mcrt/artis",
-	"title": "github/artis-mcrt/artis",
-	"url": " https://rseng.github.io/software/repository/github/artis-mcrt/artis",
-	"content": "3D Monte Carlo radiative transfer code for supernovae"
+	"github/lh3/fermi-lite": {
+	"id": "github/lh3/fermi-lite",
+	"title": "github/lh3/fermi-lite",
+	"url": " https://rseng.github.io/software/repository/github/lh3/fermi-lite",
+	"content": "Standalone C library for assembling Illumina short reads in small regions"
 	},
-	"github/TheFischerLab/FLEXR": {
-	"id": "github/TheFischerLab/FLEXR",
-	"title": "github/TheFischerLab/FLEXR",
-	"url": " https://rseng.github.io/software/repository/github/TheFischerLab/FLEXR",
-	"content": "Multi-conformer modeling of crystallographic protein structures"
+	"github/lh3/miniasm": {
+	"id": "github/lh3/miniasm",
+	"title": "github/lh3/miniasm",
+	"url": " https://rseng.github.io/software/repository/github/lh3/miniasm",
+	"content": "Ultrafast de novo assembly for long noisy reads (though having no consensus step)"
 	},
-	"github/vsulis5357/Sonification": {
-	"id": "github/vsulis5357/Sonification",
-	"title": "github/vsulis5357/Sonification",
-	"url": " https://rseng.github.io/software/repository/github/vsulis5357/Sonification",
+	"github/cancerit/alleleCount": {
+	"id": "github/cancerit/alleleCount",
+	"title": "github/cancerit/alleleCount",
+	"url": " https://rseng.github.io/software/repository/github/cancerit/alleleCount",
+	"content": "Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings)"
+	},
+	"github/eltevo/steps": {
+	"id": "github/eltevo/steps",
+	"title": "github/eltevo/steps",
+	"url": " https://rseng.github.io/software/repository/github/eltevo/steps",
+	"content": "Stereographically Projected Cosmological Simulations"
+	},
+	"github/li-shaochuan/SEDIM": {
+	"id": "github/li-shaochuan/SEDIM",
+	"title": "github/li-shaochuan/SEDIM",
+	"url": " https://rseng.github.io/software/repository/github/li-shaochuan/SEDIM",
 	"content": "None"
 	},
-	"github/AnitaPetzler/AMOEBA": {
-	"id": "github/AnitaPetzler/AMOEBA",
-	"title": "github/AnitaPetzler/AMOEBA",
-	"url": " https://rseng.github.io/software/repository/github/AnitaPetzler/AMOEBA",
-	"content": "Automated Molecular Excitation Bayesian line-fitting Algorithm"
+	"github/shenlab-sinai/ngsplot": {
+	"id": "github/shenlab-sinai/ngsplot",
+	"title": "github/shenlab-sinai/ngsplot",
+	"url": " https://rseng.github.io/software/repository/github/shenlab-sinai/ngsplot",
+	"content": "Quick mining and visualization of NGS data by integrating genomic databases"
 	},
-	"github/NickSwainston/pulsar_spectra": {
-	"id": "github/NickSwainston/pulsar_spectra",
-	"title": "github/NickSwainston/pulsar_spectra",
-	"url": " https://rseng.github.io/software/repository/github/NickSwainston/pulsar_spectra",
-	"content": "A simple interface to record pulsar&#39;s flux density measurements for a large number of papers and perform fitting of spectral models."
+	"github/VegeWaterDynamics/motrainer": {
+	"id": "github/VegeWaterDynamics/motrainer",
+	"title": "github/VegeWaterDynamics/motrainer",
+	"url": " https://rseng.github.io/software/repository/github/VegeWaterDynamics/motrainer",
+	"content": "Distributed Measurement Operator Trainer for Data Assimilation Applications"
 	},
-	"github/darrencroton/sage": {
-	"id": "github/darrencroton/sage",
-	"title": "github/darrencroton/sage",
-	"url": " https://rseng.github.io/software/repository/github/darrencroton/sage",
-	"content": "Home of the Semi-Analytic Galaxy Evolution (SAGE) galaxy formation model"
+	"github/frank1010111/pywaterflood": {
+	"id": "github/frank1010111/pywaterflood",
+	"title": "github/frank1010111/pywaterflood",
+	"url": " https://rseng.github.io/software/repository/github/frank1010111/pywaterflood",
+	"content": "Capacitance resistance models for waterflood connectivity"
 	},
-	"github/snfactory/binaryoffset": {
-	"id": "github/snfactory/binaryoffset",
-	"title": "github/snfactory/binaryoffset",
-	"url": " https://rseng.github.io/software/repository/github/snfactory/binaryoffset",
-	"content": "Detecting and Correcting the Binary Offset Effect in CCDs"
+	"github/frank1010111/bluebonnet": {
+	"id": "github/frank1010111/bluebonnet",
+	"title": "github/frank1010111/bluebonnet",
+	"url": " https://rseng.github.io/software/repository/github/frank1010111/bluebonnet",
+	"content": "Scaling solutions for production analysis from unconventional oil and gas wells"
 	},
-	"github/WorkflowConversion/CTDConverter": {
-	"id": "github/WorkflowConversion/CTDConverter",
-	"title": "github/WorkflowConversion/CTDConverter",
-	"url": " https://rseng.github.io/software/repository/github/WorkflowConversion/CTDConverter",
-	"content": "Series of python scripts to convert CTD files into other formats such as Galaxy, CWL"
+	"github/nanoporetech/flappie": {
+	"id": "github/nanoporetech/flappie",
+	"title": "github/nanoporetech/flappie",
+	"url": " https://rseng.github.io/software/repository/github/nanoporetech/flappie",
+	"content": "Flip-flop basecaller for Oxford Nanopore reads"
 	},
-	"github/WorkflowConversion/CTDopts": {
-	"id": "github/WorkflowConversion/CTDopts",
-	"title": "github/WorkflowConversion/CTDopts",
-	"url": " https://rseng.github.io/software/repository/github/WorkflowConversion/CTDopts",
-	"content": "Gives your command-line tools a CTD-compatible interface"
+	"github/nanoporetech/medaka": {
+	"id": "github/nanoporetech/medaka",
+	"title": "github/nanoporetech/medaka",
+	"url": " https://rseng.github.io/software/repository/github/nanoporetech/medaka",
+	"content": "Sequence correction provided by ONT Research"
 	},
-	"github/atmos-cloud-sim-uj/PySDM": {
-	"id": "github/atmos-cloud-sim-uj/PySDM",
-	"title": "github/atmos-cloud-sim-uj/PySDM",
-	"url": " https://rseng.github.io/software/repository/github/atmos-cloud-sim-uj/PySDM",
-	"content": "Pythonic particle-based (super-droplet) warm-rain/aqueous-chemistry cloud microphysics package with box, parcel &amp; 1D/2D prescribed-flow examples in Python, Julia and Matlab"
+	"github/nanoporetech/scrappie": {
+	"id": "github/nanoporetech/scrappie",
+	"title": "github/nanoporetech/scrappie",
+	"url": " https://rseng.github.io/software/repository/github/nanoporetech/scrappie",
+	"content": "Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group"
 	},
-	"github/atmos-cloud-sim-uj/PyMPDATA": {
-	"id": "github/atmos-cloud-sim-uj/PyMPDATA",
-	"title": "github/atmos-cloud-sim-uj/PyMPDATA",
-	"url": " https://rseng.github.io/software/repository/github/atmos-cloud-sim-uj/PyMPDATA",
-	"content": "Numba-accelerated Pythonic implementation of MPDATA with examples in Python, Julia and Matlab"
+	"github/nanoporetech/ont_fast5_api": {
+	"id": "github/nanoporetech/ont_fast5_api",
+	"title": "github/nanoporetech/ont_fast5_api",
+	"url": " https://rseng.github.io/software/repository/github/nanoporetech/ont_fast5_api",
+	"content": "Oxford Nanopore Technologies fast5 API software"
 	},
-	"github/potree/PotreeConverter": {
-	"id": "github/potree/PotreeConverter",
-	"title": "github/potree/PotreeConverter",
-	"url": " https://rseng.github.io/software/repository/github/potree/PotreeConverter",
-	"content": "Create multi res point cloud to use with potree"
+	"github/nanoporetech/pinfish": {
+	"id": "github/nanoporetech/pinfish",
+	"title": "github/nanoporetech/pinfish",
+	"url": " https://rseng.github.io/software/repository/github/nanoporetech/pinfish",
+	"content": "Tools to annotate genomes using long read transcriptomics data"
 	},
-	"github/arjunsavel/SImMER": {
-	"id": "github/arjunsavel/SImMER",
-	"title": "github/arjunsavel/SImMER",
-	"url": " https://rseng.github.io/software/repository/github/arjunsavel/SImMER",
-	"content": "An open-source &amp; modular reduction pipeline for astronomical images of point sources."
+	"github/nanoporetech/pomoxis": {
+	"id": "github/nanoporetech/pomoxis",
+	"title": "github/nanoporetech/pomoxis",
+	"url": " https://rseng.github.io/software/repository/github/nanoporetech/pomoxis",
+	"content": "Analysis components from Oxford Nanopore Research"
 	},
-	"github/arjunsavel/cortecs": {
-	"id": "github/arjunsavel/cortecs",
-	"title": "github/arjunsavel/cortecs",
-	"url": " https://rseng.github.io/software/repository/github/arjunsavel/cortecs",
-	"content": "Compressed representations of opacity for radiative transfer!"
+	"github/nanoporetech/dorado": {
+	"id": "github/nanoporetech/dorado",
+	"title": "github/nanoporetech/dorado",
+	"url": " https://rseng.github.io/software/repository/github/nanoporetech/dorado",
+	"content": "Oxford Nanopore&#39;s Basecaller"
 	},
-	"github/facom/BHMcalc": {
-	"id": "github/facom/BHMcalc",
-	"title": "github/facom/BHMcalc",
-	"url": " https://rseng.github.io/software/repository/github/facom/BHMcalc",
-	"content": "Binary Habitability Mechanism - Calculator"
+	"github/nanoporetech/pychopper": {
+	"id": "github/nanoporetech/pychopper",
+	"title": "github/nanoporetech/pychopper",
+	"url": " https://rseng.github.io/software/repository/github/nanoporetech/pychopper",
+	"content": "A tool to identify, orient, trim and rescue full length cDNA reads"
 	},
-	"github/facom/tidev": {
-	"id": "github/facom/tidev",
-	"title": "github/facom/tidev",
-	"url": " https://rseng.github.io/software/repository/github/facom/tidev",
-	"content": "None"
+	"github/nanoporetech/megalodon": {
+	"id": "github/nanoporetech/megalodon",
+	"title": "github/nanoporetech/megalodon",
+	"url": " https://rseng.github.io/software/repository/github/nanoporetech/megalodon",
+	"content": " Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome."
 	},
-	"github/facom/exorings": {
-	"id": "github/facom/exorings",
-	"title": "github/facom/exorings",
-	"url": " https://rseng.github.io/software/repository/github/facom/exorings",
-	"content": "Code Repository for Exoring Transit Properties"
+	"github/nanoporetech/qcat": {
+	"id": "github/nanoporetech/qcat",
+	"title": "github/nanoporetech/qcat",
+	"url": " https://rseng.github.io/software/repository/github/nanoporetech/qcat",
+	"content": " qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files."
 	},
-	"github/sfeeney/ddspectra": {
-	"id": "github/sfeeney/ddspectra",
-	"title": "github/sfeeney/ddspectra",
-	"url": " https://rseng.github.io/software/repository/github/sfeeney/ddspectra",
-	"content": "SSSpaNG: Stellar Spectra as Sparse Non-Gaussian Processes"
+	"github/nanoporetech/index.html#": {
+	"id": "github/nanoporetech/index.html#",
+	"title": "github/nanoporetech/index.html#",
+	"url": " https://rseng.github.io/software/repository/github/nanoporetech/index.html#",
+	"content": "a suite of tools primarily for the identification of modified nucleotides from nanopore sequencing data."
 	},
-	"github/sfeeney/hh0": {
-	"id": "github/sfeeney/hh0",
-	"title": "github/sfeeney/hh0",
-	"url": " https://rseng.github.io/software/repository/github/sfeeney/hh0",
-	"content": "Hierarchical Hubble Constant Inference"
+	"github/nanoporetech/tombo": {
+	"id": "github/nanoporetech/tombo",
+	"title": "github/nanoporetech/tombo",
+	"url": " https://rseng.github.io/software/repository/github/nanoporetech/tombo",
+	"content": "Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data. "
 	},
-	"github/phil-mansfield/gotetra": {
-	"id": "github/phil-mansfield/gotetra",
-	"title": "github/phil-mansfield/gotetra",
-	"url": " https://rseng.github.io/software/repository/github/phil-mansfield/gotetra",
-	"content": "A Go-based tracking of cosmic velocity fields through the use of tetrahedra"
+	"github/Rnazx/Scaling-Relations": {
+	"id": "github/Rnazx/Scaling-Relations",
+	"title": "github/Rnazx/Scaling-Relations",
+	"url": " https://rseng.github.io/software/repository/github/Rnazx/Scaling-Relations",
+	"content": "Python code to find the scaling relations for the galactic magnetic fields in terms of observables."
 	},
-	"github/soerendip/ms-mint": {
-	"id": "github/soerendip/ms-mint",
-	"title": "github/soerendip/ms-mint",
-	"url": " https://rseng.github.io/software/repository/github/soerendip/ms-mint",
-	"content": "Interactive application for large-scale metabolomics (MS1). "
+	"github/srdc/onfhir": {
+	"id": "github/srdc/onfhir",
+	"title": "github/srdc/onfhir",
+	"url": " https://rseng.github.io/software/repository/github/srdc/onfhir",
+	"content": "HL7 FHIR Based Secure Data Repository"
 	},
-	"github/astropatel/twinkle": {
-	"id": "github/astropatel/twinkle",
-	"title": "github/astropatel/twinkle",
-	"url": " https://rseng.github.io/software/repository/github/astropatel/twinkle",
-	"content": "Calculate and plot spectral energy distribution of main-sequence stars with additional option of blackbody/greybody calculation from mid-IR excess"
+	"github/python-streamz/streamz": {
+	"id": "github/python-streamz/streamz",
+	"title": "github/python-streamz/streamz",
+	"url": " https://rseng.github.io/software/repository/github/python-streamz/streamz",
+	"content": "Real-time stream processing for python"
 	},
-	"github/GWang2022/iGDP": {
-	"id": "github/GWang2022/iGDP",
-	"title": "github/GWang2022/iGDP",
-	"url": " https://rseng.github.io/software/repository/github/GWang2022/iGDP",
-	"content": "An integrated Genome Decontamination Pipeline for wild ciliated microeukaryotes"
+	"github/MikeSWang/Harmonia": {
+	"id": "github/MikeSWang/Harmonia",
+	"title": "github/MikeSWang/Harmonia",
+	"url": " https://rseng.github.io/software/repository/github/MikeSWang/Harmonia",
+	"content": "Hybrid-basis inference for large-scale galaxy clustering"
 	},
-	"github/ejsafron/SATCHEL": {
-	"id": "github/ejsafron/SATCHEL",
-	"title": "github/ejsafron/SATCHEL",
-	"url": " https://rseng.github.io/software/repository/github/ejsafron/SATCHEL",
-	"content": "Pipeline to search for long-period exoplanet signals in Kepler time-series data classified on the Planet Hunters website."
+	"github/MikeSWang/Triumvirate": {
+	"id": "github/MikeSWang/Triumvirate",
+	"title": "github/MikeSWang/Triumvirate",
+	"url": " https://rseng.github.io/software/repository/github/MikeSWang/Triumvirate",
+	"content": "A Python/C++ package for three-point clustering measurements in LSS analyses"
 	},
-	"github/mikekatz04/BOWIE": {
-	"id": "github/mikekatz04/BOWIE",
-	"title": "github/mikekatz04/BOWIE",
-	"url": " https://rseng.github.io/software/repository/github/mikekatz04/BOWIE",
-	"content": "BOWIE - Binary Observability With Illustrative Exploration"
+	"github/MikeSWang/HorizonGRound": {
+	"id": "github/MikeSWang/HorizonGRound",
+	"title": "github/MikeSWang/HorizonGRound",
+	"url": " https://rseng.github.io/software/repository/github/MikeSWang/HorizonGRound",
+	"content": "Relativistic effects in ultra-large-scale galaxy clustering"
 	},
-	"github/MIT-STARLab/deconfuser": {
-	"id": "github/MIT-STARLab/deconfuser",
-	"title": "github/MIT-STARLab/deconfuser",
-	"url": " https://rseng.github.io/software/repository/github/MIT-STARLab/deconfuser",
-	"content": "Fast orbit fitting to directly imaged multi-planetary systems"
+	"github/ester-project/ester": {
+	"id": "github/ester-project/ester",
+	"title": "github/ester-project/ester",
+	"url": " https://rseng.github.io/software/repository/github/ester-project/ester",
+	"content": "Evolution STEllaire en Rotation."
 	},
-	"github/seung-lab/FlyWirePaper": {
-	"id": "github/seung-lab/FlyWirePaper",
-	"title": "github/seung-lab/FlyWirePaper",
-	"url": " https://rseng.github.io/software/repository/github/seung-lab/FlyWirePaper",
-	"content": "Source code and data to reproduce analyses from the FlyWire paper."
+	"github/peterk87/sistr_cmd": {
+	"id": "github/peterk87/sistr_cmd",
+	"title": "github/peterk87/sistr_cmd",
+	"url": " https://rseng.github.io/software/repository/github/peterk87/sistr_cmd",
+	"content": "SISTR (Salmonella In Silico Typing Resource) command-line tool"
 	},
-	"github/vgl-hub/gfastats": {
-	"id": "github/vgl-hub/gfastats",
-	"title": "github/vgl-hub/gfastats",
-	"url": " https://rseng.github.io/software/repository/github/vgl-hub/gfastats",
-	"content": "A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation."
+	"github/a-griffiths/AutoSpec": {
+	"id": "github/a-griffiths/AutoSpec",
+	"title": "github/a-griffiths/AutoSpec",
+	"url": " https://rseng.github.io/software/repository/github/a-griffiths/AutoSpec",
+	"content": "Fast Automated Spectral Extraction Software for IFU Datacubes"
 	},
-	"github/etiennepayet/nti": {
-	"id": "github/etiennepayet/nti",
-	"title": "github/etiennepayet/nti",
-	"url": " https://rseng.github.io/software/repository/github/etiennepayet/nti",
-	"content": "None"
+	"github/mbaes/SpheCow": {
+	"id": "github/mbaes/SpheCow",
+	"title": "github/mbaes/SpheCow",
+	"url": " https://rseng.github.io/software/repository/github/mbaes/SpheCow",
+	"content": "Flexible dynamical models for galaxies and dark matter haloes "
 	},
-	"github/tresoldi/ngesh": {
-	"id": "github/tresoldi/ngesh",
-	"title": "github/tresoldi/ngesh",
-	"url": " https://rseng.github.io/software/repository/github/tresoldi/ngesh",
-	"content": "A Python library for generating random phylogenetic trees and related data"
+	"github/SDTC-CPMed/scDrugPrio": {
+	"id": "github/SDTC-CPMed/scDrugPrio",
+	"title": "github/SDTC-CPMed/scDrugPrio",
+	"url": " https://rseng.github.io/software/repository/github/SDTC-CPMed/scDrugPrio",
+	"content": "Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease"
 	},
-	"github/coljac/sensie": {
-	"id": "github/coljac/sensie",
-	"title": "github/coljac/sensie",
-	"url": " https://rseng.github.io/software/repository/github/coljac/sensie",
-	"content": "Toolset for probing the sensitivity of a deep neural network model to various properties of the data."
+	"github/inonchiu/ComEst": {
+	"id": "github/inonchiu/ComEst",
+	"title": "github/inonchiu/ComEst",
+	"url": " https://rseng.github.io/software/repository/github/inonchiu/ComEst",
+	"content": "ComEst - a completeness estimator"
 	},
-	"github/labxscut/ksak": {
-	"id": "github/labxscut/ksak",
-	"title": "github/labxscut/ksak",
-	"url": " https://rseng.github.io/software/repository/github/labxscut/ksak",
-	"content": "None"
+	"github/gbernstein/gbdes": {
+	"id": "github/gbernstein/gbdes",
+	"title": "github/gbernstein/gbdes",
+	"url": " https://rseng.github.io/software/repository/github/gbernstein/gbdes",
+	"content": "Gary&#39;s DES instrumental signature removal / fitting programs"
+	},
+	"github/gbernstein/pixmappy": {
+	"id": "github/gbernstein/pixmappy",
+	"title": "github/gbernstein/pixmappy",
+	"url": " https://rseng.github.io/software/repository/github/gbernstein/pixmappy",
+	"content": "Python interface to gbdes pixel map (astrometry) solutions"
+	},
+	"github/remingtonsexton/BADASS3": {
+	"id": "github/remingtonsexton/BADASS3",
+	"title": "github/remingtonsexton/BADASS3",
+	"url": " https://rseng.github.io/software/repository/github/remingtonsexton/BADASS3",
+	"content": "Bayesian AGN Decomposition Analysis for SDSS Spectra"
 	},
-	"github/devsim/devsim": {
-	"id": "github/devsim/devsim",
-	"title": "github/devsim/devsim",
-	"url": " https://rseng.github.io/software/repository/github/devsim/devsim",
-	"content": "TCAD Semiconductor Device Simulator"
+	"github/SolavLab/DuoDIC": {
+	"id": "github/SolavLab/DuoDIC",
+	"title": "github/SolavLab/DuoDIC",
+	"url": " https://rseng.github.io/software/repository/github/SolavLab/DuoDIC",
+	"content": "Stereo 3D Digital Image Correlation (3D-DIC) MATLAB toolbox"
 	},
-	"github/acbecker/hotpants": {
-	"id": "github/acbecker/hotpants",
-	"title": "github/acbecker/hotpants",
-	"url": " https://rseng.github.io/software/repository/github/acbecker/hotpants",
-	"content": "hotpants"
+	"github/mwoodbri/MRIdb": {
+	"id": "github/mwoodbri/MRIdb",
+	"title": "github/mwoodbri/MRIdb",
+	"url": " https://rseng.github.io/software/repository/github/mwoodbri/MRIdb",
+	"content": "An end-to-end data management system for MRI"
 	},
-	"github/takfung/ResDisMapper": {
-	"id": "github/takfung/ResDisMapper",
-	"title": "github/takfung/ResDisMapper",
-	"url": " https://rseng.github.io/software/repository/github/takfung/ResDisMapper",
-	"content": "None"
+	"github/ckay314/OSPREI": {
+	"id": "github/ckay314/OSPREI",
+	"title": "github/ckay314/OSPREI",
+	"url": " https://rseng.github.io/software/repository/github/ckay314/OSPREI",
+	"content": "Fully coupled system of ForeCAT-based models"
 	},
-	"github/thomasorb/orbs": {
-	"id": "github/thomasorb/orbs",
-	"title": "github/thomasorb/orbs",
-	"url": " https://rseng.github.io/software/repository/github/thomasorb/orbs",
-	"content": "ORBS is the data reduction pipeline for SITELLE"
+	"github/arcaldwell49/SimplyAgree": {
+	"id": "github/arcaldwell49/SimplyAgree",
+	"title": "github/arcaldwell49/SimplyAgree",
+	"url": " https://rseng.github.io/software/repository/github/arcaldwell49/SimplyAgree",
+	"content": "A simple R package for calculating absolute agreement and estimating required sample sizes for studies of absolute agreement"
 	},
-	"github/thomasorb/orcs": {
-	"id": "github/thomasorb/orcs",
-	"title": "github/thomasorb/orcs",
-	"url": " https://rseng.github.io/software/repository/github/thomasorb/orcs",
-	"content": "ORCS is an analysis engine for SITELLE spectral cubes."
+	"github/cnes/EleFits": {
+	"id": "github/cnes/EleFits",
+	"title": "github/cnes/EleFits",
+	"url": " https://rseng.github.io/software/repository/github/cnes/EleFits",
+	"content": "A modern C++ API on top of CFitsIO"
 	},
-	"github/dusanmarceta/Synthetic-Population-of-Interstellar-Objects": {
-	"id": "github/dusanmarceta/Synthetic-Population-of-Interstellar-Objects",
-	"title": "github/dusanmarceta/Synthetic-Population-of-Interstellar-Objects",
-	"url": " https://rseng.github.io/software/repository/github/dusanmarceta/Synthetic-Population-of-Interstellar-Objects",
-	"content": "None"
+	"github/MP-Gadget/bigfile": {
+	"id": "github/MP-Gadget/bigfile",
+	"title": "github/MP-Gadget/bigfile",
+	"url": " https://rseng.github.io/software/repository/github/MP-Gadget/bigfile",
+	"content": "A reproducible massively parallel IO library for hierarchical data"
 	},
-	"github/dusanmarceta/Synthetic-Population-of-Interstellar-Obejcts": {
-	"id": "github/dusanmarceta/Synthetic-Population-of-Interstellar-Obejcts",
-	"title": "github/dusanmarceta/Synthetic-Population-of-Interstellar-Obejcts",
-	"url": " https://rseng.github.io/software/repository/github/dusanmarceta/Synthetic-Population-of-Interstellar-Obejcts",
+	"github/NSAPH-Software/GPCERF": {
+	"id": "github/NSAPH-Software/GPCERF",
+	"title": "github/NSAPH-Software/GPCERF",
+	"url": " https://rseng.github.io/software/repository/github/NSAPH-Software/GPCERF",
 	"content": "None"
 	},
-	"github/osallou/cassiopee-c": {
-	"id": "github/osallou/cassiopee-c",
-	"title": "github/osallou/cassiopee-c",
-	"url": " https://rseng.github.io/software/repository/github/osallou/cassiopee-c",
-	"content": "Cassiopee index and search library C implementation"
+	"github/NSAPH-Software/CRE": {
+	"id": "github/NSAPH-Software/CRE",
+	"title": "github/NSAPH-Software/CRE",
+	"url": " https://rseng.github.io/software/repository/github/NSAPH-Software/CRE",
+	"content": "The Causal Rule Ensemble Method"
 	},
-	"github/open2c/pairtools": {
-	"id": "github/open2c/pairtools",
-	"title": "github/open2c/pairtools",
-	"url": " https://rseng.github.io/software/repository/github/open2c/pairtools",
-	"content": "CLI tools to process mapped Hi-C data"
+	"github/leraman/Hopla": {
+	"id": "github/leraman/Hopla",
+	"title": "github/leraman/Hopla",
+	"url": " https://rseng.github.io/software/repository/github/leraman/Hopla",
+	"content": " Streamlined duo/trio analysis and pedigree haplotyping: from VCF to interactive HTML "
 	},
-	"github/abatten/fruitbat": {
-	"id": "github/abatten/fruitbat",
-	"title": "github/abatten/fruitbat",
-	"url": " https://rseng.github.io/software/repository/github/abatten/fruitbat",
-	"content": "A fast radio burst (FRB) redshift estimation package written in Python."
+	"github/matteobreschi/bajes": {
+	"id": "github/matteobreschi/bajes",
+	"title": "github/matteobreschi/bajes",
+	"url": " https://rseng.github.io/software/repository/github/matteobreschi/bajes",
+	"content": "Bayesian Jenaer software"
 	},
-	"github/nasa/KeplerPORTs": {
-	"id": "github/nasa/KeplerPORTs",
-	"title": "github/nasa/KeplerPORTs",
-	"url": " https://rseng.github.io/software/repository/github/nasa/KeplerPORTs",
-	"content": "None"
+	"github/tacazares/SeedMatchR": {
+	"id": "github/tacazares/SeedMatchR",
+	"title": "github/tacazares/SeedMatchR",
+	"url": " https://rseng.github.io/software/repository/github/tacazares/SeedMatchR",
+	"content": "Off-target analysis of siRNA knock down paired with RNAseq"
 	},
-	"github/nasa/prog_models": {
-	"id": "github/nasa/prog_models",
-	"title": "github/nasa/prog_models",
-	"url": " https://rseng.github.io/software/repository/github/nasa/prog_models",
-	"content": "The NASA Prognostic Model Package is a Python framework focused on defining and building models for prognostics (computation of remaining useful life) of engineering systems, and provides a set of prognostics models for select components developed within this framework, suitable for use in prognostics applications for these components."
+	"github/sylabs/singularity": {
+	"id": "github/sylabs/singularity",
+	"title": "github/sylabs/singularity",
+	"url": " https://rseng.github.io/software/repository/github/sylabs/singularity",
+	"content": "SingularityCE is the Community Edition of Singularity, an open source container platform designed to be simple, fast, and secure."
 	},
-	"github/nasa/K2CE": {
-	"id": "github/nasa/K2CE",
-	"title": "github/nasa/K2CE",
-	"url": " https://rseng.github.io/software/repository/github/nasa/K2CE",
-	"content": "Kepler K2 Cadence Events (K2CE) is a Python data visualization and manipulation tool for astronomers to identify and remove cadences (observations) associated with problematic thruster events, thus producing cleaner light curves.  K2CE was designed to work with standard Kepler or K2 data products: long-cadence (30 min) and short-cadence (1 min) light curve files and long-cadence and short-cadence target pixel files.  The tool has been modified to work with light curve files and target pixel files from the TESS mission."
+	"github/bjmt/universalmotif": {
+	"id": "github/bjmt/universalmotif",
+	"title": "github/bjmt/universalmotif",
+	"url": " https://rseng.github.io/software/repository/github/bjmt/universalmotif",
+	"content": "Motif manipulation functions for R."
 	},
-	"github/nasa/ncompare": {
-	"id": "github/nasa/ncompare",
-	"title": "github/nasa/ncompare",
-	"url": " https://rseng.github.io/software/repository/github/nasa/ncompare",
-	"content": "Compare the structure of two netCDF files at the command line"
+	"github/ProjectPyRhO/PyRhO": {
+	"id": "github/ProjectPyRhO/PyRhO",
+	"title": "github/ProjectPyRhO/PyRhO",
+	"url": " https://rseng.github.io/software/repository/github/ProjectPyRhO/PyRhO",
+	"content": "A virtual optogenetics laboratory"
 	},
-	"github/nasa/kepler-robovetter": {
-	"id": "github/nasa/kepler-robovetter",
-	"title": "github/nasa/kepler-robovetter",
-	"url": " https://rseng.github.io/software/repository/github/nasa/kepler-robovetter",
+	"github/cloudflex-project/cloudflex": {
+	"id": "github/cloudflex-project/cloudflex",
+	"title": "github/cloudflex-project/cloudflex",
+	"url": " https://rseng.github.io/software/repository/github/cloudflex-project/cloudflex",
 	"content": "None"
 	},
-	"github/nasa/simupy-flight": {
-	"id": "github/nasa/simupy-flight",
-	"title": "github/nasa/simupy-flight",
-	"url": " https://rseng.github.io/software/repository/github/nasa/simupy-flight",
+	"github/XGI-MSU/WDMWaveletTransforms": {
+	"id": "github/XGI-MSU/WDMWaveletTransforms",
+	"title": "github/XGI-MSU/WDMWaveletTransforms",
+	"url": " https://rseng.github.io/software/repository/github/XGI-MSU/WDMWaveletTransforms",
 	"content": "None"
 	},
-	"github/nasa/Kamodo": {
-	"id": "github/nasa/Kamodo",
-	"title": "github/nasa/Kamodo",
-	"url": " https://rseng.github.io/software/repository/github/nasa/Kamodo",
+	"github/XGI-MSU/PyIMRPhenomD": {
+	"id": "github/XGI-MSU/PyIMRPhenomD",
+	"title": "github/XGI-MSU/PyIMRPhenomD",
+	"url": " https://rseng.github.io/software/repository/github/XGI-MSU/PyIMRPhenomD",
 	"content": "None"
 	},
-	"github/astromer-science/main-code": {
-	"id": "github/astromer-science/main-code",
-	"title": "github/astromer-science/main-code",
-	"url": " https://rseng.github.io/software/repository/github/astromer-science/main-code",
-	"content": "Latest stable implemention of ASTROMER "
+	"github/ggmichael/craterstats": {
+	"id": "github/ggmichael/craterstats",
+	"title": "github/ggmichael/craterstats",
+	"url": " https://rseng.github.io/software/repository/github/ggmichael/craterstats",
+	"content": "Craterstats - a tool to analyse and plot crater count data for planetary surface dating"
 	},
-	"github/wilkelab/Opfi": {
-	"id": "github/wilkelab/Opfi",
-	"title": "github/wilkelab/Opfi",
-	"url": " https://rseng.github.io/software/repository/github/wilkelab/Opfi",
-	"content": "A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets."
+	"github/GregoryFaust/samblaster": {
+	"id": "github/GregoryFaust/samblaster",
+	"title": "github/GregoryFaust/samblaster",
+	"url": " https://rseng.github.io/software/repository/github/GregoryFaust/samblaster",
+	"content": "samblaster: a tool to mark duplicates and extract discordant and split reads from sam files."
 	},
-	"github/gaelforget/MITgcm.jl": {
-	"id": "github/gaelforget/MITgcm.jl",
-	"title": "github/gaelforget/MITgcm.jl",
-	"url": " https://rseng.github.io/software/repository/github/gaelforget/MITgcm.jl",
-	"content": "Julia interface to MITgcm"
+	"github/GregoryFaust/yaha": {
+	"id": "github/GregoryFaust/yaha",
+	"title": "github/GregoryFaust/yaha",
+	"url": " https://rseng.github.io/software/repository/github/GregoryFaust/yaha",
+	"content": "yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp to 32kb."
 	},
-	"github/vterron/lemon": {
-	"id": "github/vterron/lemon",
-	"title": "github/vterron/lemon",
-	"url": " https://rseng.github.io/software/repository/github/vterron/lemon",
-	"content": "Differential photometry for humans (and astronomers)"
+	"github/LSARP/ProteomicsQC": {
+	"id": "github/LSARP/ProteomicsQC",
+	"title": "github/LSARP/ProteomicsQC",
+	"url": " https://rseng.github.io/software/repository/github/LSARP/ProteomicsQC",
+	"content": "Quality Control Pipeline Server for quantitative Proteomics"
 	},
-	"github/umbramortem/nProFit": {
-	"id": "github/umbramortem/nProFit",
-	"title": "github/umbramortem/nProFit",
-	"url": " https://rseng.github.io/software/repository/github/umbramortem/nProFit",
-	"content": "Tool for analysis of surface brightness profiles"
+	"github/ialbert/genescape-central": {
+	"id": "github/ialbert/genescape-central",
+	"title": "github/ialbert/genescape-central",
+	"url": " https://rseng.github.io/software/repository/github/ialbert/genescape-central",
+	"content": "Gene Ontology subgraph visualizations"
 	},
-	"github/FCS-analysis/multipletau": {
-	"id": "github/FCS-analysis/multipletau",
-	"title": "github/FCS-analysis/multipletau",
-	"url": " https://rseng.github.io/software/repository/github/FCS-analysis/multipletau",
-	"content": "python multiple-tau correlation algorithm"
+	"github/SDXorg/pysd": {
+	"id": "github/SDXorg/pysd",
+	"title": "github/SDXorg/pysd",
+	"url": " https://rseng.github.io/software/repository/github/SDXorg/pysd",
+	"content": "System Dynamics Modeling in Python"
 	},
-	"github/lberaldoesilva/naif": {
-	"id": "github/lberaldoesilva/naif",
-	"title": "github/lberaldoesilva/naif",
-	"url": " https://rseng.github.io/software/repository/github/lberaldoesilva/naif",
-	"content": "pure-python package for numerical analysis of frequencies of numerically integrated orbits"
+	"github/heliopython/heliopy": {
+	"id": "github/heliopython/heliopy",
+	"title": "github/heliopython/heliopy",
+	"url": " https://rseng.github.io/software/repository/github/heliopython/heliopy",
+	"content": "Python for heliospheric and planetary physics"
 	},
-	"github/BMILAB/scLINE": {
-	"id": "github/BMILAB/scLINE",
-	"title": "github/BMILAB/scLINE",
-	"url": " https://rseng.github.io/software/repository/github/BMILAB/scLINE",
-	"content": "None"
+	"github/thegenemyers/DEXTRACTOR": {
+	"id": "github/thegenemyers/DEXTRACTOR",
+	"title": "github/thegenemyers/DEXTRACTOR",
+	"url": " https://rseng.github.io/software/repository/github/thegenemyers/DEXTRACTOR",
+	"content": "bax file decoder and data compressor."
 	},
-	"github/linsalrob/PhiSpy": {
-	"id": "github/linsalrob/PhiSpy",
-	"title": "github/linsalrob/PhiSpy",
-	"url": " https://rseng.github.io/software/repository/github/linsalrob/PhiSpy",
-	"content": "Prediction of prophages from bacterial genomes"
+	"github/thegenemyers/DAZZ_DB": {
+	"id": "github/thegenemyers/DAZZ_DB",
+	"title": "github/thegenemyers/DAZZ_DB",
+	"url": " https://rseng.github.io/software/repository/github/thegenemyers/DAZZ_DB",
+	"content": "The Dazzler Data Base"
 	},
-	"github/chfeder/turbulence_generator": {
-	"id": "github/chfeder/turbulence_generator",
-	"title": "github/chfeder/turbulence_generator",
-	"url": " https://rseng.github.io/software/repository/github/chfeder/turbulence_generator",
-	"content": "Turbulence driving and initial conditions generator"
+	"github/thegenemyers/DAMAPPER": {
+	"id": "github/thegenemyers/DAMAPPER",
+	"title": "github/thegenemyers/DAMAPPER",
+	"url": " https://rseng.github.io/software/repository/github/thegenemyers/DAMAPPER",
+	"content": "Long read to reference genome mapping tool"
 	},
-	"github/MichelleLochner/astronomaly": {
-	"id": "github/MichelleLochner/astronomaly",
-	"title": "github/MichelleLochner/astronomaly",
-	"url": " https://rseng.github.io/software/repository/github/MichelleLochner/astronomaly",
-	"content": "A flexible framework for anomaly detection in astronomy."
+	"github/thegenemyers/DALIGNER": {
+	"id": "github/thegenemyers/DALIGNER",
+	"title": "github/thegenemyers/DALIGNER",
+	"url": " https://rseng.github.io/software/repository/github/thegenemyers/DALIGNER",
+	"content": "finds all significant local alignments between reads."
 	},
-	"github/Jingxuan97/nemesispy": {
-	"id": "github/Jingxuan97/nemesispy",
-	"title": "github/Jingxuan97/nemesispy",
-	"url": " https://rseng.github.io/software/repository/github/Jingxuan97/nemesispy",
-	"content": "Tools for modelling exoplanet spectra"
+	"github/ntlucia/BrownDwarf-SpectralIndices": {
+	"id": "github/ntlucia/BrownDwarf-SpectralIndices",
+	"title": "github/ntlucia/BrownDwarf-SpectralIndices",
+	"url": " https://rseng.github.io/software/repository/github/ntlucia/BrownDwarf-SpectralIndices",
+	"content": "Method to determine if a brown dwarf is a candidate to be a photometric variable or not, by means of the study of spectral indices."
 	},
-	"github/DotBots/qrkey": {
-	"id": "github/DotBots/qrkey",
-	"title": "github/DotBots/qrkey",
-	"url": " https://rseng.github.io/software/repository/github/DotBots/qrkey",
-	"content": "Simply and Securely Control Robots Swarms"
+	"github/vsquicciarini/madys": {
+	"id": "github/vsquicciarini/madys",
+	"title": "github/vsquicciarini/madys",
+	"url": " https://rseng.github.io/software/repository/github/vsquicciarini/madys",
+	"content": "MADYS: isochronal parameter determination for young stellar and substellar objects"
 	},
-	"github/Dulab2020/ARMT": {
-	"id": "github/Dulab2020/ARMT",
-	"title": "github/Dulab2020/ARMT",
-	"url": " https://rseng.github.io/software/repository/github/Dulab2020/ARMT",
-	"content": "None"
+	"github/HIPS/autograd": {
+	"id": "github/HIPS/autograd",
+	"title": "github/HIPS/autograd",
+	"url": " https://rseng.github.io/software/repository/github/HIPS/autograd",
+	"content": "Efficiently computes derivatives of numpy code."
 	},
-	"github/blebon/directChillFoam": {
-	"id": "github/blebon/directChillFoam",
-	"title": "github/blebon/directChillFoam",
-	"url": " https://rseng.github.io/software/repository/github/blebon/directChillFoam",
-	"content": "OpenFOAM solver for direct chill casting"
+	"github/xcompact3d/Incompact3d": {
+	"id": "github/xcompact3d/Incompact3d",
+	"title": "github/xcompact3d/Incompact3d",
+	"url": " https://rseng.github.io/software/repository/github/xcompact3d/Incompact3d",
+	"content": "New version of our solver for the incompressible Navier-Stokes equations"
 	},
-	"github/COVID-IWG/epimargin": {
-	"id": "github/COVID-IWG/epimargin",
-	"title": "github/COVID-IWG/epimargin",
-	"url": " https://rseng.github.io/software/repository/github/COVID-IWG/epimargin",
-	"content": "networked, stochastic SIRD epidemiological model with Bayesian parameter estimation and policy scenario comparison tools "
+	"github/MegaMorph/galapagos-c": {
+	"id": "github/MegaMorph/galapagos-c",
+	"title": "github/MegaMorph/galapagos-c",
+	"url": " https://rseng.github.io/software/repository/github/MegaMorph/galapagos-c",
+	"content": "Andreas Hiemer&#39;s re-implementation and extension of GALAPAGOS in C"
 	},
-	"github/esa/NIDN": {
-	"id": "github/esa/NIDN",
-	"title": "github/esa/NIDN",
-	"url": " https://rseng.github.io/software/repository/github/esa/NIDN",
-	"content": "Neural Inverse Design of Nanostructures"
+	"github/CatarinaMMarques/FisherCosmology": {
+	"id": "github/CatarinaMMarques/FisherCosmology",
+	"title": "github/CatarinaMMarques/FisherCosmology",
+	"url": " https://rseng.github.io/software/repository/github/CatarinaMMarques/FisherCosmology",
+	"content": "Forecasting Code for Redshift Drift and Alpha Measurements"
 	},
-	"github/esa/pagmo2-paper": {
-	"id": "github/esa/pagmo2-paper",
-	"title": "github/esa/pagmo2-paper",
-	"url": " https://rseng.github.io/software/repository/github/esa/pagmo2-paper",
-	"content": "paper for JOSS on pagmo and pygmo"
+	"github/pynbody/pynbody": {
+	"id": "github/pynbody/pynbody",
+	"title": "github/pynbody/pynbody",
+	"url": " https://rseng.github.io/software/repository/github/pynbody/pynbody",
+	"content": "N-body and hydro analysis tools for Python 3. (Older versions support Python 2.)"
 	},
-	"github/esa/polyhedral-gravity-model": {
-	"id": "github/esa/polyhedral-gravity-model",
-	"title": "github/esa/polyhedral-gravity-model",
-	"url": " https://rseng.github.io/software/repository/github/esa/polyhedral-gravity-model",
-	"content": "Implementation of a polyhedral gravity model in C++17 with a Python Binding"
+	"github/pynbody/genetIC": {
+	"id": "github/pynbody/genetIC",
+	"title": "github/pynbody/genetIC",
+	"url": " https://rseng.github.io/software/repository/github/pynbody/genetIC",
+	"content": "The GM initial conditions generator"
 	},
-	"github/OpenWaterAnalytics/EPyT": {
-	"id": "github/OpenWaterAnalytics/EPyT",
-	"title": "github/OpenWaterAnalytics/EPyT",
-	"url": " https://rseng.github.io/software/repository/github/OpenWaterAnalytics/EPyT",
-	"content": "EPyT: An EPANET-Python Toolkit for Smart Water Network Simulations"
+	"github/pynbody/tangos": {
+	"id": "github/pynbody/tangos",
+	"title": "github/pynbody/tangos",
+	"url": " https://rseng.github.io/software/repository/github/pynbody/tangos",
+	"content": "The Agile Numerical Galaxy Organisation System"
 	},
-	"github/OpenWaterAnalytics/pyswmm": {
-	"id": "github/OpenWaterAnalytics/pyswmm",
-	"title": "github/OpenWaterAnalytics/pyswmm",
-	"url": " https://rseng.github.io/software/repository/github/OpenWaterAnalytics/pyswmm",
-	"content": "Python Wrappers for SWMM"
+	"github/saeyslab/PeacoQC": {
+	"id": "github/saeyslab/PeacoQC",
+	"title": "github/saeyslab/PeacoQC",
+	"url": " https://rseng.github.io/software/repository/github/saeyslab/PeacoQC",
+	"content": "Peak-based selection of high quality cytometry data"
 	},
-	"github/kambrian/SubGen": {
-	"id": "github/kambrian/SubGen",
-	"title": "github/kambrian/SubGen",
-	"url": " https://rseng.github.io/software/repository/github/kambrian/SubGen",
-	"content": "a fast subhalo sampler"
+	"github/saeyslab/nichenetr": {
+	"id": "github/saeyslab/nichenetr",
+	"title": "github/saeyslab/nichenetr",
+	"url": " https://rseng.github.io/software/repository/github/saeyslab/nichenetr",
+	"content": "NicheNet: predict active ligand-target links between interacting cells"
 	},
-	"github/Mulan-94/smops": {
-	"id": "github/Mulan-94/smops",
-	"title": "github/Mulan-94/smops",
-	"url": " https://rseng.github.io/software/repository/github/Mulan-94/smops",
-	"content": "Interpolate FITS model images over higher frequency intervals"
+	"github/saeyslab/CytoNorm_Figures": {
+	"id": "github/saeyslab/CytoNorm_Figures",
+	"title": "github/saeyslab/CytoNorm_Figures",
+	"url": " https://rseng.github.io/software/repository/github/saeyslab/CytoNorm_Figures",
+	"content": "Scripts to replicate the figures reported in the CytofNorm publication. "
 	},
-	"github/NLeSC-GO-common-infrastructure/marzipan": {
-	"id": "github/NLeSC-GO-common-infrastructure/marzipan",
-	"title": "github/NLeSC-GO-common-infrastructure/marzipan",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC-GO-common-infrastructure/marzipan",
-	"content": "Automated OpenNebula instantiation and provisioning (e.g  SURF HPC)"
+	"github/scikit-learn-contrib/hdbscan": {
+	"id": "github/scikit-learn-contrib/hdbscan",
+	"title": "github/scikit-learn-contrib/hdbscan",
+	"url": " https://rseng.github.io/software/repository/github/scikit-learn-contrib/hdbscan",
+	"content": "A high performance implementation of HDBSCAN clustering."
 	},
-	"github/JulianBMunoz/21cmvFAST": {
-	"id": "github/JulianBMunoz/21cmvFAST",
-	"title": "github/JulianBMunoz/21cmvFAST",
-	"url": " https://rseng.github.io/software/repository/github/JulianBMunoz/21cmvFAST",
-	"content": "Modified version of 21cmFAST including dark matter-baryon relative velocities."
+	"github/icecube/toise": {
+	"id": "github/icecube/toise",
+	"title": "github/icecube/toise",
+	"url": " https://rseng.github.io/software/repository/github/icecube/toise",
+	"content": "Framework to describe the performance of high-energy neutrino detectors"
 	},
-	"github/JulianBMunoz/Zeus21": {
-	"id": "github/JulianBMunoz/Zeus21",
-	"title": "github/JulianBMunoz/Zeus21",
-	"url": " https://rseng.github.io/software/repository/github/JulianBMunoz/Zeus21",
-	"content": "Zeus21: Lightning-fast simulations of cosmic dawn"
+	"github/icecube/FIRESONG": {
+	"id": "github/icecube/FIRESONG",
+	"title": "github/icecube/FIRESONG",
+	"url": " https://rseng.github.io/software/repository/github/icecube/FIRESONG",
+	"content": "FIRst Extragalactic Simulation Of Neutrino and Gamma-ray"
 	},
-	"github/JulianBMunoz/RelicFast": {
-	"id": "github/JulianBMunoz/RelicFast",
-	"title": "github/JulianBMunoz/RelicFast",
-	"url": " https://rseng.github.io/software/repository/github/JulianBMunoz/RelicFast",
-	"content": "Code to find scale-dependent halo bias quickly and accurately"
+	"github/icecube/TauRunner": {
+	"id": "github/icecube/TauRunner",
+	"title": "github/icecube/TauRunner",
+	"url": " https://rseng.github.io/software/repository/github/icecube/TauRunner",
+	"content": "Code to propagate tau neutrinos at very high energies"
 	},
-	"github/austinpeel/herculens": {
-	"id": "github/austinpeel/herculens",
-	"title": "github/austinpeel/herculens",
-	"url": " https://rseng.github.io/software/repository/github/austinpeel/herculens",
-	"content": "Auto-differentiable strong lens modelling with JAX"
+	"github/ExaScience/elprep": {
+	"id": "github/ExaScience/elprep",
+	"title": "github/ExaScience/elprep",
+	"url": " https://rseng.github.io/software/repository/github/ExaScience/elprep",
+	"content": "a high-performance tool for analyzing .sam/.bam files (up to and including variant calling) in sequencing pipelines."
 	},
-	"github/FAIR-data-for-CAPACITY/FHIR-to-CAPACITY": {
-	"id": "github/FAIR-data-for-CAPACITY/FHIR-to-CAPACITY",
-	"title": "github/FAIR-data-for-CAPACITY/FHIR-to-CAPACITY",
-	"url": " https://rseng.github.io/software/repository/github/FAIR-data-for-CAPACITY/FHIR-to-CAPACITY",
+	"github/archaeo-pteryx/PowerSpecCovFFT": {
+	"id": "github/archaeo-pteryx/PowerSpecCovFFT",
+	"title": "github/archaeo-pteryx/PowerSpecCovFFT",
+	"url": " https://rseng.github.io/software/repository/github/archaeo-pteryx/PowerSpecCovFFT",
+	"content": "FFTLog-based computation of non-Gaussian analytic covariance of galaxy power spectrum multipoles "
+	},
+	"github/mlinderm/npsv": {
+	"id": "github/mlinderm/npsv",
+	"title": "github/mlinderm/npsv",
+	"url": " https://rseng.github.io/software/repository/github/mlinderm/npsv",
+	"content": "Non-parametric structural variant genotyper"
+	},
+	"github/opengenomebrowser/opengenomebrowser": {
+	"id": "github/opengenomebrowser/opengenomebrowser",
+	"title": "github/opengenomebrowser/opengenomebrowser",
+	"url": " https://rseng.github.io/software/repository/github/opengenomebrowser/opengenomebrowser",
 	"content": "None"
 	},
-	"github/mariogrs/Simfast21": {
-	"id": "github/mariogrs/Simfast21",
-	"title": "github/mariogrs/Simfast21",
-	"url": " https://rseng.github.io/software/repository/github/mariogrs/Simfast21",
-	"content": "21cm code"
+	"github/captain-exoplanet/misttborn": {
+	"id": "github/captain-exoplanet/misttborn",
+	"title": "github/captain-exoplanet/misttborn",
+	"url": " https://rseng.github.io/software/repository/github/captain-exoplanet/misttborn",
+	"content": "MISTTBORN exoplanet fitting code, and various associated codes"
 	},
-	"github/cobilab/RFSC": {
-	"id": "github/cobilab/RFSC",
-	"title": "github/cobilab/RFSC",
-	"url": " https://rseng.github.io/software/repository/github/cobilab/RFSC",
-	"content": "Reference-Free Sequence Classification Tool for DNA sequences in metagenomic samples"
+	"github/cire-thk/BifacialSimu": {
+	"id": "github/cire-thk/BifacialSimu",
+	"title": "github/cire-thk/BifacialSimu",
+	"url": " https://rseng.github.io/software/repository/github/cire-thk/BifacialSimu",
+	"content": "Simulation of bifacial PV"
 	},
-	"github/cobilab/altair": {
-	"id": "github/cobilab/altair",
-	"title": "github/cobilab/altair",
-	"url": " https://rseng.github.io/software/repository/github/cobilab/altair",
-	"content": "AltaiR: a C toolkit for alignment-free and spatial-temporal analysis of multi-FASTA data"
+	"github/connectomicslab/connectomemapper3": {
+	"id": "github/connectomicslab/connectomemapper3",
+	"title": "github/connectomicslab/connectomemapper3",
+	"url": " https://rseng.github.io/software/repository/github/connectomicslab/connectomemapper3",
+	"content": "Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD data, and preprocessed EEG to multi-resolution brain parcellation with corresponding connection matrices."
+	},
+	"github/freesurfer/freesurfer": {
+	"id": "github/freesurfer/freesurfer",
+	"title": "github/freesurfer/freesurfer",
+	"url": " https://rseng.github.io/software/repository/github/freesurfer/freesurfer",
+	"content": "Neuroimaging analysis and visualization suite"
+	},
+	"github/PacificBiosciences/pbmm2": {
+	"id": "github/PacificBiosciences/pbmm2",
+	"title": "github/PacificBiosciences/pbmm2",
+	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/pbmm2",
+	"content": "A minimap2 frontend for PacBio native data formats"
+	},
+	"github/PacificBiosciences/pbcore": {
+	"id": "github/PacificBiosciences/pbcore",
+	"title": "github/PacificBiosciences/pbcore",
+	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/pbcore",
+	"content": "A Python library for reading and writing PacBio® data files"
+	},
+	"github/PacificBiosciences/IsoSeq": {
+	"id": "github/PacificBiosciences/IsoSeq",
+	"title": "github/PacificBiosciences/IsoSeq",
+	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/IsoSeq",
+	"content": "IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads"
 	},
-	"github/OP2/PyOP2": {
-	"id": "github/OP2/PyOP2",
-	"title": "github/OP2/PyOP2",
-	"url": " https://rseng.github.io/software/repository/github/OP2/PyOP2",
-	"content": "Framework for performance-portable parallel computations on unstructured meshes"
+	"github/PacificBiosciences/pbalign": {
+	"id": "github/PacificBiosciences/pbalign",
+	"title": "github/PacificBiosciences/pbalign",
+	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/pbalign",
+	"content": "pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. The output Compare HDF5 file will be compatible with Quiver if --forQuiver option is specified."
 	},
-	"github/Bonfanti88/MCMCI": {
-	"id": "github/Bonfanti88/MCMCI",
-	"title": "github/Bonfanti88/MCMCI",
-	"url": " https://rseng.github.io/software/repository/github/Bonfanti88/MCMCI",
-	"content": "A code to fully characterise an exoplanetary system (Bonfanti &amp; Gillon, 2020)"
+	"github/PacificBiosciences/pbcopper": {
+	"id": "github/PacificBiosciences/pbcopper",
+	"title": "github/PacificBiosciences/pbcopper",
+	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/pbcopper",
+	"content": "Core C++ library for data structures, algorithms, and utilities"
 	},
-	"github/IPESE/REHO": {
-	"id": "github/IPESE/REHO",
-	"title": "github/IPESE/REHO",
-	"url": " https://rseng.github.io/software/repository/github/IPESE/REHO",
-	"content": "Decision Support Tool for Renewable Energy Communities"
+	"github/PacificBiosciences/FALCON": {
+	"id": "github/PacificBiosciences/FALCON",
+	"title": "github/PacificBiosciences/FALCON",
+	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/FALCON",
+	"content": "FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries"
 	},
-	"github/mjacob1002/Eir": {
-	"id": "github/mjacob1002/Eir",
-	"title": "github/mjacob1002/Eir",
-	"url": " https://rseng.github.io/software/repository/github/mjacob1002/Eir",
-	"content": "Eir is a package that helps researchers simulate the spread of epidemics, mainly focusing on discrete-time Markovian spatial models. "
+	"github/PacificBiosciences/kineticsTools": {
+	"id": "github/PacificBiosciences/kineticsTools",
+	"title": "github/PacificBiosciences/kineticsTools",
+	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/kineticsTools",
+	"content": "Tools for detecting DNA modifications from single molecule, real-time sequencing data"
 	},
-	"github/MIC-DKFZ/HD-BET": {
-	"id": "github/MIC-DKFZ/HD-BET",
-	"title": "github/MIC-DKFZ/HD-BET",
-	"url": " https://rseng.github.io/software/repository/github/MIC-DKFZ/HD-BET",
-	"content": "MRI brain extraction tool"
+	"github/PacificBiosciences/minorseq": {
+	"id": "github/PacificBiosciences/minorseq",
+	"title": "github/PacificBiosciences/minorseq",
+	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/minorseq",
+	"content": "Minor Variant Calling and Phasing Tools"
 	},
-	"github/MIC-DKFZ/TractSeg": {
-	"id": "github/MIC-DKFZ/TractSeg",
-	"title": "github/MIC-DKFZ/TractSeg",
-	"url": " https://rseng.github.io/software/repository/github/MIC-DKFZ/TractSeg",
-	"content": "Automatic White Matter Bundle Segmentation"
+	"github/PacificBiosciences/HiPhase": {
+	"id": "github/PacificBiosciences/HiPhase",
+	"title": "github/PacificBiosciences/HiPhase",
+	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/HiPhase",
+	"content": "Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads"
 	},
-	"github/tum-pbs/PhiML": {
-	"id": "github/tum-pbs/PhiML",
-	"title": "github/tum-pbs/PhiML",
-	"url": " https://rseng.github.io/software/repository/github/tum-pbs/PhiML",
-	"content": "Intuitive scientific computing with dimension types for Jax, PyTorch, TensorFlow &amp; NumPy"
+	"github/PacificBiosciences/pbbioconda": {
+	"id": "github/PacificBiosciences/pbbioconda",
+	"title": "github/PacificBiosciences/pbbioconda",
+	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/pbbioconda",
+	"content": "PacBio Secondary Analysis Tools on Bioconda"
 	},
-	"github/pvlib/pvlib-python": {
-	"id": "github/pvlib/pvlib-python",
-	"title": "github/pvlib/pvlib-python",
-	"url": " https://rseng.github.io/software/repository/github/pvlib/pvlib-python",
-	"content": "A set of documented functions for simulating the performance of photovoltaic energy systems."
+	"github/PacificBiosciences/blasr": {
+	"id": "github/PacificBiosciences/blasr",
+	"title": "github/PacificBiosciences/blasr",
+	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/blasr",
+	"content": "BLASR (Basic Local Alignment with Successive Refinement) maps Single Molecule Sequencing (SMS) reads that are thousands of bases long, with divergence between the read and genome dominated by insertion and deletion error."
 	},
-	"github/andersdot/photoParallax": {
-	"id": "github/andersdot/photoParallax",
-	"title": "github/andersdot/photoParallax",
-	"url": " https://rseng.github.io/software/repository/github/andersdot/photoParallax",
-	"content": "data-driven photometric parallaxes, built with Gaia and 2MASS"
+	"github/PacificBiosciences/pbbam": {
+	"id": "github/PacificBiosciences/pbbam",
+	"title": "github/PacificBiosciences/pbbam",
+	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/pbbam",
+	"content": "PacBio BAM C++ library"
 	},
-	"github/xinglunju/pyAmor": {
-	"id": "github/xinglunju/pyAmor",
-	"title": "github/xinglunju/pyAmor",
-	"url": " https://rseng.github.io/software/repository/github/xinglunju/pyAmor",
-	"content": "python code to derive temperatures using Ammonia spectral lines"
+	"github/Open-ET/flux-data-qaqc": {
+	"id": "github/Open-ET/flux-data-qaqc",
+	"title": "github/Open-ET/flux-data-qaqc",
+	"url": " https://rseng.github.io/software/repository/github/Open-ET/flux-data-qaqc",
+	"content": "Energy Balance Closure Analysis and Eddy Flux Data Post-Processing"
 	},
 	"github/mischaschirmer/nebular": {
 	"id": "github/mischaschirmer/nebular",
@@ -1725,221 +813,239 @@
 	"url": " https://rseng.github.io/software/repository/github/mischaschirmer/nebular",
 	"content": "NEBULAR is a lightweight software to synthesize the astrophysical spectrum of a hydrogen helium gas mix in collisional ionization equilibrium. It is written in C++ and depends on the GNU Scientific Library (GSL)."
 	},
-	"github/csdms/bmi": {
-	"id": "github/csdms/bmi",
-	"title": "github/csdms/bmi",
-	"url": " https://rseng.github.io/software/repository/github/csdms/bmi",
-	"content": "The Basic Model Interface"
+	"github/scipy/scipy": {
+	"id": "github/scipy/scipy",
+	"title": "github/scipy/scipy",
+	"url": " https://rseng.github.io/software/repository/github/scipy/scipy",
+	"content": "Scipy library main repository"
 	},
-	"github/openscm/openscm-twolayermodel": {
-	"id": "github/openscm/openscm-twolayermodel",
-	"title": "github/openscm/openscm-twolayermodel",
-	"url": " https://rseng.github.io/software/repository/github/openscm/openscm-twolayermodel",
-	"content": "Implementations of two-layer models by Held et al. and Geoffroy et al."
+	"github/CSUBioGroup/GraphLncLoc": {
+	"id": "github/CSUBioGroup/GraphLncLoc",
+	"title": "github/CSUBioGroup/GraphLncLoc",
+	"url": " https://rseng.github.io/software/repository/github/CSUBioGroup/GraphLncLoc",
+	"content": "None"
 	},
-	"github/MICCoM/SSAGES-public": {
-	"id": "github/MICCoM/SSAGES-public",
-	"title": "github/MICCoM/SSAGES-public",
-	"url": " https://rseng.github.io/software/repository/github/MICCoM/SSAGES-public",
-	"content": "Software Suite for Advanced General Ensemble Simulations"
+	"github/CadenArmstrong/simuTrans": {
+	"id": "github/CadenArmstrong/simuTrans",
+	"title": "github/CadenArmstrong/simuTrans",
+	"url": " https://rseng.github.io/software/repository/github/CadenArmstrong/simuTrans",
+	"content": "Exoplanet transit simulator."
 	},
-	"github/dkoslicki/TAMPA": {
-	"id": "github/dkoslicki/TAMPA",
-	"title": "github/dkoslicki/TAMPA",
-	"url": " https://rseng.github.io/software/repository/github/dkoslicki/TAMPA",
-	"content": "A collection of tools to visualize CAMI profiling outputs"
+	"github/era-urban/wrfpy": {
+	"id": "github/era-urban/wrfpy",
+	"title": "github/era-urban/wrfpy",
+	"url": " https://rseng.github.io/software/repository/github/era-urban/wrfpy",
+	"content": "None"
 	},
-	"github/spinicist/riesling": {
-	"id": "github/spinicist/riesling",
-	"title": "github/spinicist/riesling",
-	"url": " https://rseng.github.io/software/repository/github/spinicist/riesling",
-	"content": "Radial Interstices Enable Speedy Low-Volume Imaging"
+	"github/abs-tudelft/variant-calling-at-scale": {
+	"id": "github/abs-tudelft/variant-calling-at-scale",
+	"title": "github/abs-tudelft/variant-calling-at-scale",
+	"url": " https://rseng.github.io/software/repository/github/abs-tudelft/variant-calling-at-scale",
+	"content": "Scalable and Efficient Variant Calling on Apache Spark cluster"
 	},
-	"github/ClapeyronThermo/GCIdentifier.jl": {
-	"id": "github/ClapeyronThermo/GCIdentifier.jl",
-	"title": "github/ClapeyronThermo/GCIdentifier.jl",
-	"url": " https://rseng.github.io/software/repository/github/ClapeyronThermo/GCIdentifier.jl",
-	"content": "tools to perform group contribution (GC) identification, given the SMILES of a compound"
+	"github/ClaraLage/Portfolio-Transition": {
+	"id": "github/ClaraLage/Portfolio-Transition",
+	"title": "github/ClaraLage/Portfolio-Transition",
+	"url": " https://rseng.github.io/software/repository/github/ClaraLage/Portfolio-Transition",
+	"content": "https://hal.archives-ouvertes.fr/hal-03423114/"
 	},
-	"github/finagle29/DBSP_DRP": {
-	"id": "github/finagle29/DBSP_DRP",
-	"title": "github/finagle29/DBSP_DRP",
-	"url": " https://rseng.github.io/software/repository/github/finagle29/DBSP_DRP",
-	"content": "Fully-automated data reduction pipeline for DBSP built with PypeIt"
+	"github/deepmodeling/DMFF": {
+	"id": "github/deepmodeling/DMFF",
+	"title": "github/deepmodeling/DMFF",
+	"url": " https://rseng.github.io/software/repository/github/deepmodeling/DMFF",
+	"content": "DMFF (Differentiable Molecular Force Field) is a Jax-based python package that provides a full differentiable implementation of molecular force field models. "
 	},
-	"github/dzesmin/TEA": {
-	"id": "github/dzesmin/TEA",
-	"title": "github/dzesmin/TEA",
-	"url": " https://rseng.github.io/software/repository/github/dzesmin/TEA",
-	"content": "Thermochemical Equilibrium Abundances (TEA), a code to calculate gaseous molecular abundances under thermochemical equilibrium conditions"
+	"github/PACurran/MCSpearman": {
+	"id": "github/PACurran/MCSpearman",
+	"title": "github/PACurran/MCSpearman",
+	"url": " https://rseng.github.io/software/repository/github/PACurran/MCSpearman",
+	"content": "Monte Carlo error analyses of Spearman’s rank test"
 	},
-	"github/tberlok/paicos": {
-	"id": "github/tberlok/paicos",
-	"title": "github/tberlok/paicos",
-	"url": " https://rseng.github.io/software/repository/github/tberlok/paicos",
-	"content": "An object-oriented Python package for analysis of (cosmological) simulations performed with Arepo"
+	"github/hfarias/mask_galaxy": {
+	"id": "github/hfarias/mask_galaxy",
+	"title": "github/hfarias/mask_galaxy",
+	"url": " https://rseng.github.io/software/repository/github/hfarias/mask_galaxy",
+	"content": "Morphological segmentation of Galaxies"
 	},
-	"github/mzytnicki/srnaMapper": {
-	"id": "github/mzytnicki/srnaMapper",
-	"title": "github/mzytnicki/srnaMapper",
-	"url": " https://rseng.github.io/software/repository/github/mzytnicki/srnaMapper",
-	"content": "Mapping small RNA data to a genome."
+	"github/xuanxu/starmatrix": {
+	"id": "github/xuanxu/starmatrix",
+	"title": "github/xuanxu/starmatrix",
+	"url": " https://rseng.github.io/software/repository/github/xuanxu/starmatrix",
+	"content": "Modelling nucleosynthesis of galactic chemical elements"
 	},
-	"github/spicy-oil/hfs_fit": {
-	"id": "github/spicy-oil/hfs_fit",
-	"title": "github/spicy-oil/hfs_fit",
-	"url": " https://rseng.github.io/software/repository/github/spicy-oil/hfs_fit",
-	"content": "None"
+	"github/gaelforget/MITgcm.jl": {
+	"id": "github/gaelforget/MITgcm.jl",
+	"title": "github/gaelforget/MITgcm.jl",
+	"url": " https://rseng.github.io/software/repository/github/gaelforget/MITgcm.jl",
+	"content": "Julia interface to MITgcm"
 	},
-	"github/BenNordick/HiLoop": {
-	"id": "github/BenNordick/HiLoop",
-	"title": "github/BenNordick/HiLoop",
-	"url": " https://rseng.github.io/software/repository/github/BenNordick/HiLoop",
-	"content": "None"
+	"github/dixonlab/hic_breakfinder": {
+	"id": "github/dixonlab/hic_breakfinder",
+	"title": "github/dixonlab/hic_breakfinder",
+	"url": " https://rseng.github.io/software/repository/github/dixonlab/hic_breakfinder",
+	"content": "a framework that integrates optical mapping, high-throughput chromosome conformation capture (Hi-C), and whole genome sequencing to systematically detect SVs in a variety of normal or cancer samples and cell lines."
 	},
-	"github/iontorrent/TS": {
-	"id": "github/iontorrent/TS",
-	"title": "github/iontorrent/TS",
-	"url": " https://rseng.github.io/software/repository/github/iontorrent/TS",
-	"content": "Torrent Suite"
+	"github/mathworks/Simscape-Medical-Ventilator": {
+	"id": "github/mathworks/Simscape-Medical-Ventilator",
+	"title": "github/mathworks/Simscape-Medical-Ventilator",
+	"url": " https://rseng.github.io/software/repository/github/mathworks/Simscape-Medical-Ventilator",
+	"content": "Positive-pressure medical ventilator system using Simscape™"
 	},
-	"github/vaexio/vaex": {
-	"id": "github/vaexio/vaex",
-	"title": "github/vaexio/vaex",
-	"url": " https://rseng.github.io/software/repository/github/vaexio/vaex",
-	"content": "Out-of-Core hybrid Apache Arrow/NumPy DataFrame for Python, ML, visualization and exploration of big tabular data at a billion rows per second 🚀"
+	"github/epiforecasts/covidregionaldata": {
+	"id": "github/epiforecasts/covidregionaldata",
+	"title": "github/epiforecasts/covidregionaldata",
+	"url": " https://rseng.github.io/software/repository/github/epiforecasts/covidregionaldata",
+	"content": "An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wherever available we also provide data on deaths, hospitalisations, and tests. National level data is also supported using a range of data sources as well as linelist data and links to intervention data sets."
 	},
-	"github/ahudde/greeks": {
-	"id": "github/ahudde/greeks",
-	"title": "github/ahudde/greeks",
-	"url": " https://rseng.github.io/software/repository/github/ahudde/greeks",
-	"content": "Sensitivities of Prices of Financial Options and Implied Volatilites"
+	"github/jorittmo/singcar": {
+	"id": "github/jorittmo/singcar",
+	"title": "github/jorittmo/singcar",
+	"url": " https://rseng.github.io/software/repository/github/jorittmo/singcar",
+	"content": "singcar: A package for analysing case comparisons to normative controls"
 	},
-	"github/JMLascar/SUSHI": {
-	"id": "github/JMLascar/SUSHI",
-	"title": "github/JMLascar/SUSHI",
-	"url": " https://rseng.github.io/software/repository/github/JMLascar/SUSHI",
+	"github/berenslab/MorphoPy": {
+	"id": "github/berenslab/MorphoPy",
+	"title": "github/berenslab/MorphoPy",
+	"url": " https://rseng.github.io/software/repository/github/berenslab/MorphoPy",
 	"content": "None"
 	},
-	"github/JelfsMaterialsGroup/stk": {
-	"id": "github/JelfsMaterialsGroup/stk",
-	"title": "github/JelfsMaterialsGroup/stk",
-	"url": " https://rseng.github.io/software/repository/github/JelfsMaterialsGroup/stk",
-	"content": "Mirror of lukasturcani/stk - please file issues / fork / star that repo. "
+	"github/phipsonlab/propeller-paper-analysis": {
+	"id": "github/phipsonlab/propeller-paper-analysis",
+	"title": "github/phipsonlab/propeller-paper-analysis",
+	"url": " https://rseng.github.io/software/repository/github/phipsonlab/propeller-paper-analysis",
+	"content": "The website hosts the analysis and evaluation of different statistical methods for  determining differences in cell type proportions in single cell RNA-seq data."
 	},
-	"github/aasensio/hazel": {
-	"id": "github/aasensio/hazel",
-	"title": "github/aasensio/hazel",
-	"url": " https://rseng.github.io/software/repository/github/aasensio/hazel",
-	"content": "Hazel: synthesis and inversion of Stokes profiles"
+	"github/xavierdidelot/ClonalFrameML": {
+	"id": "github/xavierdidelot/ClonalFrameML",
+	"title": "github/xavierdidelot/ClonalFrameML",
+	"url": " https://rseng.github.io/software/repository/github/xavierdidelot/ClonalFrameML",
+	"content": "ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes"
 	},
-	"github/aasensio/sicon": {
-	"id": "github/aasensio/sicon",
-	"title": "github/aasensio/sicon",
-	"url": " https://rseng.github.io/software/repository/github/aasensio/sicon",
-	"content": "Deep Learning Assisted Stokes Inversion"
+	"github/xavierdidelot/clonalorigin": {
+	"id": "github/xavierdidelot/clonalorigin",
+	"title": "github/xavierdidelot/clonalorigin",
+	"url": " https://rseng.github.io/software/repository/github/xavierdidelot/clonalorigin",
+	"content": "Inference of homologous recombination in bacteria using whole genome sequences"
 	},
-	"github/msaland/THInCR-Suite": {
-	"id": "github/msaland/THInCR-Suite",
-	"title": "github/msaland/THInCR-Suite",
-	"url": " https://rseng.github.io/software/repository/github/msaland/THInCR-Suite",
-	"content": "None"
+	"github/OSU-BMBL/IDAM": {
+	"id": "github/OSU-BMBL/IDAM",
+	"title": "github/OSU-BMBL/IDAM",
+	"url": " https://rseng.github.io/software/repository/github/OSU-BMBL/IDAM",
+	"content": "Infer disease-associated microbial biomarkers based on metagenomic and metatranscriptomic data"
 	},
-	"github/tdrobinson/coronagraph_noise": {
-	"id": "github/tdrobinson/coronagraph_noise",
-	"title": "github/tdrobinson/coronagraph_noise",
-	"url": " https://rseng.github.io/software/repository/github/tdrobinson/coronagraph_noise",
-	"content": "Coronagraph noise modeling routines"
+	"github/cheng-zhao/FCFC": {
+	"id": "github/cheng-zhao/FCFC",
+	"title": "github/cheng-zhao/FCFC",
+	"url": " https://rseng.github.io/software/repository/github/cheng-zhao/FCFC",
+	"content": "Fast Correlation Function Calculator"
 	},
-	"github/rjtanner/StarburstPy": {
-	"id": "github/rjtanner/StarburstPy",
-	"title": "github/rjtanner/StarburstPy",
-	"url": " https://rseng.github.io/software/repository/github/rjtanner/StarburstPy",
-	"content": "Python Wrapper for Starburst99"
+	"github/tlverse/hal9001": {
+	"id": "github/tlverse/hal9001",
+	"title": "github/tlverse/hal9001",
+	"url": " https://rseng.github.io/software/repository/github/tlverse/hal9001",
+	"content": "🤠 📿 The Highly Adaptive Lasso"
 	},
-	"github/bcjaeger/aorsf": {
-	"id": "github/bcjaeger/aorsf",
-	"title": "github/bcjaeger/aorsf",
-	"url": " https://rseng.github.io/software/repository/github/bcjaeger/aorsf",
-	"content": "Accelerated Oblique Random Survival Forests"
+	"github/mj-will/nessai": {
+	"id": "github/mj-will/nessai",
+	"title": "github/mj-will/nessai",
+	"url": " https://rseng.github.io/software/repository/github/mj-will/nessai",
+	"content": "nessai: Nested Sampling with Artificial Intelligence"
 	},
-	"github/dnafinder/uroccomp": {
-	"id": "github/dnafinder/uroccomp",
-	"title": "github/dnafinder/uroccomp",
-	"url": " https://rseng.github.io/software/repository/github/dnafinder/uroccomp",
-	"content": "Compare two unpaired ROC curves"
+	"github/xxsds/DYNAMIC": {
+	"id": "github/xxsds/DYNAMIC",
+	"title": "github/xxsds/DYNAMIC",
+	"url": " https://rseng.github.io/software/repository/github/xxsds/DYNAMIC",
+	"content": "Dynamic succinct/compressed data structures"
 	},
-	"github/baxmittens/VTUFileHandler": {
-	"id": "github/baxmittens/VTUFileHandler",
-	"title": "github/baxmittens/VTUFileHandler",
-	"url": " https://rseng.github.io/software/repository/github/baxmittens/VTUFileHandler",
-	"content": "A VTU library in the Julia language that implements an algebra for basic mathematical operations on VTU data."
+	"github/jbussemaker/SBArchOpt": {
+	"id": "github/jbussemaker/SBArchOpt",
+	"title": "github/jbussemaker/SBArchOpt",
+	"url": " https://rseng.github.io/software/repository/github/jbussemaker/SBArchOpt",
+	"content": "Surrogate-Based Architecture Optimization toolbox"
 	},
-	"github/baxmittens/OpenGeoSysUncertaintyQuantification.jl": {
-	"id": "github/baxmittens/OpenGeoSysUncertaintyQuantification.jl",
-	"title": "github/baxmittens/OpenGeoSysUncertaintyQuantification.jl",
-	"url": " https://rseng.github.io/software/repository/github/baxmittens/OpenGeoSysUncertaintyQuantification.jl",
-	"content": "An uncertainty quantification toolbox for OpenGeoSys 6"
+	"github/MrShoenel/metrics-as-scores": {
+	"id": "github/MrShoenel/metrics-as-scores",
+	"title": "github/MrShoenel/metrics-as-scores",
+	"url": " https://rseng.github.io/software/repository/github/MrShoenel/metrics-as-scores",
+	"content": "Contains the data and scripts needed for the application Metrics as Scores"
 	},
-	"github/WMD-group/SMACT": {
-	"id": "github/WMD-group/SMACT",
-	"title": "github/WMD-group/SMACT",
-	"url": " https://rseng.github.io/software/repository/github/WMD-group/SMACT",
-	"content": "Python package to aid materials design"
+	"github/samwaseda/mamonca": {
+	"id": "github/samwaseda/mamonca",
+	"title": "github/samwaseda/mamonca",
+	"url": " https://rseng.github.io/software/repository/github/samwaseda/mamonca",
+	"content": "None"
 	},
-	"github/WMD-group/MacroDensity": {
-	"id": "github/WMD-group/MacroDensity",
-	"title": "github/WMD-group/MacroDensity",
-	"url": " https://rseng.github.io/software/repository/github/WMD-group/MacroDensity",
-	"content": "Analyse electron density &amp; potential grids using Python"
+	"github/EOSC-LOFAR/lofar-ld": {
+	"id": "github/EOSC-LOFAR/lofar-ld",
+	"title": "github/EOSC-LOFAR/lofar-ld",
+	"url": " https://rseng.github.io/software/repository/github/EOSC-LOFAR/lofar-ld",
+	"content": "LOFAR Linked Data Platform"
 	},
-	"github/WMD-group/CarrierCapture.jl": {
-	"id": "github/WMD-group/CarrierCapture.jl",
-	"title": "github/WMD-group/CarrierCapture.jl",
-	"url": " https://rseng.github.io/software/repository/github/WMD-group/CarrierCapture.jl",
-	"content": "Package to compute trap-assisted electron and hole capture in semiconducting compounds"
+	"github/nilearn/nilearnhub.io": {
+	"id": "github/nilearn/nilearnhub.io",
+	"title": "github/nilearn/nilearnhub.io",
+	"url": " https://rseng.github.io/software/repository/github/nilearn/nilearnhub.io",
+	"content": "a Python module for fast and easy statistical learning on NeuroImaging data.

It leverages the scikit-learn Python toolbox for multivariate statistics with applications such as predictive modelling, classification, decoding, or connectivity analysis."
 	},
-	"github/WMD-group/hybrid-perovskites": {
-	"id": "github/WMD-group/hybrid-perovskites",
-	"title": "github/WMD-group/hybrid-perovskites",
-	"url": " https://rseng.github.io/software/repository/github/WMD-group/hybrid-perovskites",
-	"content": "DFT optimised crystal structures of inorganic and hybrid halide perovskites"
+	"github/drcandacemakedamoore/cleanX": {
+	"id": "github/drcandacemakedamoore/cleanX",
+	"title": "github/drcandacemakedamoore/cleanX",
+	"url": " https://rseng.github.io/software/repository/github/drcandacemakedamoore/cleanX",
+	"content": "Python library for exploring, cleaning, normalizing, and augmenting large datasets of radiological data."
 	},
-	"github/WMD-group/Eris": {
-	"id": "github/WMD-group/Eris",
-	"title": "github/WMD-group/Eris",
-	"url": " https://rseng.github.io/software/repository/github/WMD-group/Eris",
-	"content": "Monte Carlo codes to simulate cation disorder in kesterite semiconductors"
+	"github/MNiwano/Eclaire": {
+	"id": "github/MNiwano/Eclaire",
+	"title": "github/MNiwano/Eclaire",
+	"url": " https://rseng.github.io/software/repository/github/MNiwano/Eclaire",
+	"content": "Python package using GPU via CUDA for astronomical image reduction"
 	},
-	"github/WMD-group/StarryNight": {
-	"id": "github/WMD-group/StarryNight",
-	"title": "github/WMD-group/StarryNight",
-	"url": " https://rseng.github.io/software/repository/github/WMD-group/StarryNight",
-	"content": "Monte Carlo codes to simulate polar domains in hybrid perovskite solar cells"
+	"github/reality/klarigi": {
+	"id": "github/reality/klarigi",
+	"title": "github/reality/klarigi",
+	"url": " https://rseng.github.io/software/repository/github/reality/klarigi",
+	"content": "None"
 	},
-	"github/seqcode/allo": {
-	"id": "github/seqcode/allo",
-	"title": "github/seqcode/allo",
-	"url": " https://rseng.github.io/software/repository/github/seqcode/allo",
-	"content": "Allo: a multi-mapped read rescue strategy for peak based gene regulatory analyses"
+	"github/indralab/pybiopax": {
+	"id": "github/indralab/pybiopax",
+	"title": "github/indralab/pybiopax",
+	"url": " https://rseng.github.io/software/repository/github/indralab/pybiopax",
+	"content": "PyBioPAX: A python implementation of the BioPAX object model"
 	},
-	"github/morphometry/papaya2": {
-	"id": "github/morphometry/papaya2",
-	"title": "github/morphometry/papaya2",
-	"url": " https://rseng.github.io/software/repository/github/morphometry/papaya2",
-	"content": "compute 2D irreducible Minkowski tensors"
+	"github/DeepRank/deeprank": {
+	"id": "github/DeepRank/deeprank",
+	"title": "github/DeepRank/deeprank",
+	"url": " https://rseng.github.io/software/repository/github/DeepRank/deeprank",
+	"content": "Deep learning framework for data mining protein-protein interactions using CNN"
 	},
-	"github/OxES/k2sc": {
-	"id": "github/OxES/k2sc",
-	"title": "github/OxES/k2sc",
-	"url": " https://rseng.github.io/software/repository/github/OxES/k2sc",
-	"content": "K2 systematics correction using Gaussian processes"
+	"github/DeepRank/iScore": {
+	"id": "github/DeepRank/iScore",
+	"title": "github/DeepRank/iScore",
+	"url": " https://rseng.github.io/software/repository/github/DeepRank/iScore",
+	"content": "iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines"
 	},
-	"github/dingshandeng/diskmint": {
-	"id": "github/dingshandeng/diskmint",
-	"title": "github/dingshandeng/diskmint",
-	"url": " https://rseng.github.io/software/repository/github/dingshandeng/diskmint",
-	"content": "DiskMINT (Disk Model For INdividual Targets): a tool to estimate disk masses with CO isotopologues"
+	"github/DeepRank/pssmgen": {
+	"id": "github/DeepRank/pssmgen",
+	"title": "github/DeepRank/pssmgen",
+	"url": " https://rseng.github.io/software/repository/github/DeepRank/pssmgen",
+	"content": "Generates consistent PSSM and/or PDB files for protein-protein complexes"
+	},
+	"github/DeepRank/deeprank-core": {
+	"id": "github/DeepRank/deeprank-core",
+	"title": "github/DeepRank/deeprank-core",
+	"url": " https://rseng.github.io/software/repository/github/DeepRank/deeprank-core",
+	"content": "None"
+	},
+	"github/DeepRank/DeepRank-GNN": {
+	"id": "github/DeepRank/DeepRank-GNN",
+	"title": "github/DeepRank/DeepRank-GNN",
+	"url": " https://rseng.github.io/software/repository/github/DeepRank/DeepRank-GNN",
+	"content": "Graph Network for protein-protein interface"
+	},
+	"github/DeepRank/pdb2sql": {
+	"id": "github/DeepRank/pdb2sql",
+	"title": "github/DeepRank/pdb2sql",
+	"url": " https://rseng.github.io/software/repository/github/DeepRank/pdb2sql",
+	"content": "Fast and versatile biomolecular structure PDB file parser using SQL queries"
 	},
 	"github/yangyongsan-bio/GREAP": {
 	"id": "github/yangyongsan-bio/GREAP",
@@ -1947,1433 +1053,1445 @@
 	"url": " https://rseng.github.io/software/repository/github/yangyongsan-bio/GREAP",
 	"content": "None"
 	},
-	"github/wcxve/elisa": {
-	"id": "github/wcxve/elisa",
-	"title": "github/wcxve/elisa",
-	"url": " https://rseng.github.io/software/repository/github/wcxve/elisa",
-	"content": "Efficient library for spectral analysis in high-energy astrophysics."
-	},
-	"github/imr-framework/OCTOPUS": {
-	"id": "github/imr-framework/OCTOPUS",
-	"title": "github/imr-framework/OCTOPUS",
-	"url": " https://rseng.github.io/software/repository/github/imr-framework/OCTOPUS",
-	"content": "Off-resonance Correction OPen soUrce Software"
-	},
-	"github/monarch-initiative/loinc2hpo": {
-	"id": "github/monarch-initiative/loinc2hpo",
-	"title": "github/monarch-initiative/loinc2hpo",
-	"url": " https://rseng.github.io/software/repository/github/monarch-initiative/loinc2hpo",
-	"content": "Java library to map LOINC-encoded test results to Human Phenotype Ontology"
-	},
-	"github/julia-wrobel/registr": {
-	"id": "github/julia-wrobel/registr",
-	"title": "github/julia-wrobel/registr",
-	"url": " https://rseng.github.io/software/repository/github/julia-wrobel/registr",
-	"content": "Register exponential family curves"
-	},
-	"github/TeamPerie/CellDestiny": {
-	"id": "github/TeamPerie/CellDestiny",
-	"title": "github/TeamPerie/CellDestiny",
-	"url": " https://rseng.github.io/software/repository/github/TeamPerie/CellDestiny",
-	"content": "None"
+	"github/llrs/experDesign": {
+	"id": "github/llrs/experDesign",
+	"title": "github/llrs/experDesign",
+	"url": " https://rseng.github.io/software/repository/github/llrs/experDesign",
+	"content": "Design experiments distributed in several batches"
 	},
-	"github/astrorama/sourcextractorplusplus": {
-	"id": "github/astrorama/sourcextractorplusplus",
-	"title": "github/astrorama/sourcextractorplusplus",
-	"url": " https://rseng.github.io/software/repository/github/astrorama/sourcextractorplusplus",
-	"content": "SourceXtractor++, the next generation SExtractor"
+	"github/alekseyzimin/ufasta": {
+	"id": "github/alekseyzimin/ufasta",
+	"title": "github/alekseyzimin/ufasta",
+	"url": " https://rseng.github.io/software/repository/github/alekseyzimin/ufasta",
+	"content": "Utility to manipulate fasta files"
 	},
-	"github/qmarcou/IGoR": {
-	"id": "github/qmarcou/IGoR",
-	"title": "github/qmarcou/IGoR",
-	"url": " https://rseng.github.io/software/repository/github/qmarcou/IGoR",
-	"content": "IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:"
+	"github/SophieMLV/axionHMcode": {
+	"id": "github/SophieMLV/axionHMcode",
+	"title": "github/SophieMLV/axionHMcode",
+	"url": " https://rseng.github.io/software/repository/github/SophieMLV/axionHMcode",
+	"content": "A fully expanded halo model to calculate the non-linear power spectrum in a mixed dark matter cosmology with ultra-light axions"
 	},
-	"github/spectrapepper/spectrapepper": {
-	"id": "github/spectrapepper/spectrapepper",
-	"title": "github/spectrapepper/spectrapepper",
-	"url": " https://rseng.github.io/software/repository/github/spectrapepper/spectrapepper",
-	"content": "A Python package for advanced processing and combinatorial analysis of spectroscopy data."
+	"github/minaskar/hankl": {
+	"id": "github/minaskar/hankl",
+	"title": "github/minaskar/hankl",
+	"url": " https://rseng.github.io/software/repository/github/minaskar/hankl",
+	"content": "hankl is a lightweight Python implementation of the FFTLog algorithm for Cosmology"
 	},
-	"github/ELELAB/LipidDyn": {
-	"id": "github/ELELAB/LipidDyn",
-	"title": "github/ELELAB/LipidDyn",
-	"url": " https://rseng.github.io/software/repository/github/ELELAB/LipidDyn",
-	"content": "repository associated to our pipeline for lipid dynamics"
+	"github/minaskar/zeus": {
+	"id": "github/minaskar/zeus",
+	"title": "github/minaskar/zeus",
+	"url": " https://rseng.github.io/software/repository/github/minaskar/zeus",
+	"content": "⚡️ zeus: Lightning Fast MCMC ⚡️"
 	},
-	"github/ELELAB/CAncer-bioMarker-Prediction-Pipeline-CAMPP": {
-	"id": "github/ELELAB/CAncer-bioMarker-Prediction-Pipeline-CAMPP",
-	"title": "github/ELELAB/CAncer-bioMarker-Prediction-Pipeline-CAMPP",
-	"url": " https://rseng.github.io/software/repository/github/ELELAB/CAncer-bioMarker-Prediction-Pipeline-CAMPP",
-	"content": "The Cancer bioMarker Prediction Pipeline (CAMPP) "
+	"github/minaskar/pocomc": {
+	"id": "github/minaskar/pocomc",
+	"title": "github/minaskar/pocomc",
+	"url": " https://rseng.github.io/software/repository/github/minaskar/pocomc",
+	"content": "pocoMC: A Python implementation of Preconditioned Monte Carlo for accelerated Bayesian Computation"
 	},
-	"github/ELELAB/cancermuts": {
-	"id": "github/ELELAB/cancermuts",
-	"title": "github/ELELAB/cancermuts",
-	"url": " https://rseng.github.io/software/repository/github/ELELAB/cancermuts",
-	"content": "Software for the automatic annotation of cancer mutations"
+	"github/ymocquar/HOODESolver.jl": {
+	"id": "github/ymocquar/HOODESolver.jl",
+	"title": "github/ymocquar/HOODESolver.jl",
+	"url": " https://rseng.github.io/software/repository/github/ymocquar/HOODESolver.jl",
+	"content": "High Oscillatory Ordinary Differential Equation Solver (write in Julia language)"
 	},
-	"github/ELELAB/RosettaDDGPrediction": {
-	"id": "github/ELELAB/RosettaDDGPrediction",
-	"title": "github/ELELAB/RosettaDDGPrediction",
-	"url": " https://rseng.github.io/software/repository/github/ELELAB/RosettaDDGPrediction",
-	"content": "None"
+	"github/JetBrains-Research/spbla": {
+	"id": "github/JetBrains-Research/spbla",
+	"title": "github/JetBrains-Research/spbla",
+	"url": " https://rseng.github.io/software/repository/github/JetBrains-Research/spbla",
+	"content": "Sparse Boolean linear algebra for Nvidia Cuda, OpenCL and CPU computations"
 	},
-	"github/NeamulKabir/EnsembleFam": {
-	"id": "github/NeamulKabir/EnsembleFam",
-	"title": "github/NeamulKabir/EnsembleFam",
-	"url": " https://rseng.github.io/software/repository/github/NeamulKabir/EnsembleFam",
-	"content": "EnsembleFam: Towards a more accurate protein function prediction in twilight zone"
+	"github/alan-turing-institute/Palaeoanalytics": {
+	"id": "github/alan-turing-institute/Palaeoanalytics",
+	"title": "github/alan-turing-institute/Palaeoanalytics",
+	"url": " https://rseng.github.io/software/repository/github/alan-turing-institute/Palaeoanalytics",
+	"content": "Repository for the Paleoanalytics project."
 	},
-	"github/wathela/PyMerger": {
-	"id": "github/wathela/PyMerger",
-	"title": "github/wathela/PyMerger",
-	"url": " https://rseng.github.io/software/repository/github/wathela/PyMerger",
-	"content": "None"
+	"github/alan-turing-institute/setvis": {
+	"id": "github/alan-turing-institute/setvis",
+	"title": "github/alan-turing-institute/setvis",
+	"url": " https://rseng.github.io/software/repository/github/alan-turing-institute/setvis",
+	"content": "A tool for visualising set membership and patterns of missingness in data"
 	},
-	"github/wathela/FIRST-CLASSIFIER": {
-	"id": "github/wathela/FIRST-CLASSIFIER",
-	"title": "github/wathela/FIRST-CLASSIFIER",
-	"url": " https://rseng.github.io/software/repository/github/wathela/FIRST-CLASSIFIER",
-	"content": "FIRST Classifier: Compact and Extended Radio Galaxies Classification using Deep Convolutional Neural Networks"
+	"github/alan-turing-institute/DetectorChecker": {
+	"id": "github/alan-turing-institute/DetectorChecker",
+	"title": "github/alan-turing-institute/DetectorChecker",
+	"url": " https://rseng.github.io/software/repository/github/alan-turing-institute/DetectorChecker",
+	"content": " Project to develop software to assess developing detector screen damage (Web App based on the original DetectorChecker package)"
 	},
-	"github/ialbert/genescape-central": {
-	"id": "github/ialbert/genescape-central",
-	"title": "github/ialbert/genescape-central",
-	"url": " https://rseng.github.io/software/repository/github/ialbert/genescape-central",
-	"content": "Gene Ontology subgraph visualizations"
+	"github/alan-turing-institute/monitoring-ecosystem-resilience": {
+	"id": "github/alan-turing-institute/monitoring-ecosystem-resilience",
+	"title": "github/alan-turing-institute/monitoring-ecosystem-resilience",
+	"url": " https://rseng.github.io/software/repository/github/alan-turing-institute/monitoring-ecosystem-resilience",
+	"content": "Repository for mini-projects in the Data science for Sustainable development project "
 	},
-	"github/scikit-hep/iminuit": {
-	"id": "github/scikit-hep/iminuit",
-	"title": "github/scikit-hep/iminuit",
-	"url": " https://rseng.github.io/software/repository/github/scikit-hep/iminuit",
-	"content": "Jupyter-friendly Python interface for C++ MINUIT2"
+	"github/alan-turing-institute/MLJ.jl": {
+	"id": "github/alan-turing-institute/MLJ.jl",
+	"title": "github/alan-turing-institute/MLJ.jl",
+	"url": " https://rseng.github.io/software/repository/github/alan-turing-institute/MLJ.jl",
+	"content": "A Julia machine learning framework"
 	},
-	"github/scikit-hep/pyhf": {
-	"id": "github/scikit-hep/pyhf",
-	"title": "github/scikit-hep/pyhf",
-	"url": " https://rseng.github.io/software/repository/github/scikit-hep/pyhf",
-	"content": "pure-Python HistFactory implementation with tensors and autodiff"
+	"github/sheinasim/HiFiAdapterFilt": {
+	"id": "github/sheinasim/HiFiAdapterFilt",
+	"title": "github/sheinasim/HiFiAdapterFilt",
+	"url": " https://rseng.github.io/software/repository/github/sheinasim/HiFiAdapterFilt",
+	"content": "Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz)."
 	},
-	"github/linuxscout/pyarabic": {
-	"id": "github/linuxscout/pyarabic",
-	"title": "github/linuxscout/pyarabic",
-	"url": " https://rseng.github.io/software/repository/github/linuxscout/pyarabic",
-	"content": "pyarabic"
+	"github/tcherninceline/PPInteractions": {
+	"id": "github/tcherninceline/PPInteractions",
+	"title": "github/tcherninceline/PPInteractions",
+	"url": " https://rseng.github.io/software/repository/github/tcherninceline/PPInteractions",
+	"content": "None"
 	},
-	"github/ZJUFanLab/scTITANS": {
-	"id": "github/ZJUFanLab/scTITANS",
-	"title": "github/ZJUFanLab/scTITANS",
-	"url": " https://rseng.github.io/software/repository/github/ZJUFanLab/scTITANS",
-	"content": "Identifying key genes and cell subclusters for time-series single cell sequencing data"
+	"github/PetervanLunteren/EcoAssist": {
+	"id": "github/PetervanLunteren/EcoAssist",
+	"title": "github/PetervanLunteren/EcoAssist",
+	"url": " https://rseng.github.io/software/repository/github/PetervanLunteren/EcoAssist",
+	"content": "Train and deploy custom YOLOv5 species classifiers for camera trap images based around the MegaDetector model"
 	},
-	"github/ZJUFanLab/bulk2space": {
-	"id": "github/ZJUFanLab/bulk2space",
-	"title": "github/ZJUFanLab/bulk2space",
-	"url": " https://rseng.github.io/software/repository/github/ZJUFanLab/bulk2space",
-	"content": "a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles"
+	"github/flaminiafortuni/FORECAST": {
+	"id": "github/flaminiafortuni/FORECAST",
+	"title": "github/flaminiafortuni/FORECAST",
+	"url": " https://rseng.github.io/software/repository/github/flaminiafortuni/FORECAST",
+	"content": "None"
 	},
-	"github/PolymerGuy/recolo": {
-	"id": "github/PolymerGuy/recolo",
-	"title": "github/PolymerGuy/recolo",
-	"url": " https://rseng.github.io/software/repository/github/PolymerGuy/recolo",
-	"content": "Load reconstuction using virtual fields"
+	"github/UTEL-UIUC/gtfs_segments": {
+	"id": "github/UTEL-UIUC/gtfs_segments",
+	"title": "github/UTEL-UIUC/gtfs_segments",
+	"url": " https://rseng.github.io/software/repository/github/UTEL-UIUC/gtfs_segments",
+	"content": "GTFS Segments: A fast and efficient library to generate bus stop spacings"
 	},
-	"github/gigjozsa/tirific": {
-	"id": "github/gigjozsa/tirific",
-	"title": "github/gigjozsa/tirific",
-	"url": " https://rseng.github.io/software/repository/github/gigjozsa/tirific",
-	"content": "Tilted-Ring-Fitting-Code"
+	"github/jteutenberg/downpore": {
+	"id": "github/jteutenberg/downpore",
+	"title": "github/jteutenberg/downpore",
+	"url": " https://rseng.github.io/software/repository/github/jteutenberg/downpore",
+	"content": "a suite of tools for use in genome assembly and consensus."
 	},
-	"github/ejikeugba/serp": {
-	"id": "github/ejikeugba/serp",
-	"title": "github/ejikeugba/serp",
-	"url": " https://rseng.github.io/software/repository/github/ejikeugba/serp",
-	"content": "Smooth Effects on Response Penalty for CLM"
+	"github/kkrismer/scansite4": {
+	"id": "github/kkrismer/scansite4",
+	"title": "github/kkrismer/scansite4",
+	"url": " https://rseng.github.io/software/repository/github/kkrismer/scansite4",
+	"content": "Scansite searches for motifs within proteins that are likely to be phosphorylated by specific protein kinases or bind to domains such as SH2 domains, 14-3-3 domains or PDZ domains."
 	},
-	"github/ejikeugba/gofcat": {
-	"id": "github/ejikeugba/gofcat",
-	"title": "github/ejikeugba/gofcat",
-	"url": " https://rseng.github.io/software/repository/github/ejikeugba/gofcat",
-	"content": "Goodness-of-fit tests for categorical response models"
+	"github/mifumagalli/cluster-cloc": {
+	"id": "github/mifumagalli/cluster-cloc",
+	"title": "github/mifumagalli/cluster-cloc",
+	"url": " https://rseng.github.io/software/repository/github/mifumagalli/cluster-cloc",
+	"content": "Automatically exported from code.google.com/p/cluster-cloc"
 	},
-	"github/JGCRI/tethys": {
-	"id": "github/JGCRI/tethys",
-	"title": "github/JGCRI/tethys",
-	"url": " https://rseng.github.io/software/repository/github/JGCRI/tethys",
-	"content": "Spatiotemporal downscaling model for global water use"
+	"github/niceume/datasailr": {
+	"id": "github/niceume/datasailr",
+	"title": "github/niceume/datasailr",
+	"url": " https://rseng.github.io/software/repository/github/niceume/datasailr",
+	"content": "Base repository for DataSailr R package, which enables row by row data manipulation. To build and/or develop DataSailr R package, use datasailr_toolchain repository."
 	},
-	"github/JGCRI/plutus": {
-	"id": "github/JGCRI/plutus",
-	"title": "github/JGCRI/plutus",
-	"url": " https://rseng.github.io/software/repository/github/JGCRI/plutus",
+	"github/BioinfoUNIBA/REDItools2": {
+	"id": "github/BioinfoUNIBA/REDItools2",
+	"title": "github/BioinfoUNIBA/REDItools2",
+	"url": " https://rseng.github.io/software/repository/github/BioinfoUNIBA/REDItools2",
 	"content": "None"
 	},
-	"github/JGCRI/rmap": {
-	"id": "github/JGCRI/rmap",
-	"title": "github/JGCRI/rmap",
-	"url": " https://rseng.github.io/software/repository/github/JGCRI/rmap",
-	"content": "Mapping software with pre-loaded global and local maps"
-	},
-	"github/JGCRI/gcamfaostat": {
-	"id": "github/JGCRI/gcamfaostat",
-	"title": "github/JGCRI/gcamfaostat",
-	"url": " https://rseng.github.io/software/repository/github/JGCRI/gcamfaostat",
-	"content": "An R package to prepare, process, and synthesize FAOSTAT data for global agroeconomic and multisector dynamic modeling"
+	"github/Stat-Cook/deident": {
+	"id": "github/Stat-Cook/deident",
+	"title": "github/Stat-Cook/deident",
+	"url": " https://rseng.github.io/software/repository/github/Stat-Cook/deident",
+	"content": "None"
 	},
-	"github/JGCRI/ambrosia": {
-	"id": "github/JGCRI/ambrosia",
-	"title": "github/JGCRI/ambrosia",
-	"url": " https://rseng.github.io/software/repository/github/JGCRI/ambrosia",
-	"content": "An R package for calculating and analyzing food demand and in accordance with the Edmonds et al food demand model"
+	"github/dominic-chang/Krang.jl": {
+	"id": "github/dominic-chang/Krang.jl",
+	"title": "github/dominic-chang/Krang.jl",
+	"url": " https://rseng.github.io/software/repository/github/dominic-chang/Krang.jl",
+	"content": "Fast analytic raytracing around Kerr black holes"
 	},
-	"github/JGCRI/stitches": {
-	"id": "github/JGCRI/stitches",
-	"title": "github/JGCRI/stitches",
-	"url": " https://rseng.github.io/software/repository/github/JGCRI/stitches",
-	"content": "Amalgamate existing climate data to create monthly climate variable fields."
+	"github/YihePang/DisoFLAG": {
+	"id": "github/YihePang/DisoFLAG",
+	"title": "github/YihePang/DisoFLAG",
+	"url": " https://rseng.github.io/software/repository/github/YihePang/DisoFLAG",
+	"content": "Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model"
 	},
-	"github/JGCRI/rfasst": {
-	"id": "github/JGCRI/rfasst",
-	"title": "github/JGCRI/rfasst",
-	"url": " https://rseng.github.io/software/repository/github/JGCRI/rfasst",
-	"content": "Estimation of a consistent range of adverse health and agricultural effects attributable to air pollution for a GCAM scenario"
+	"github/idptools/metapredict": {
+	"id": "github/idptools/metapredict",
+	"title": "github/idptools/metapredict",
+	"url": " https://rseng.github.io/software/repository/github/idptools/metapredict",
+	"content": "A machine learning based protein disorder predictor."
 	},
-	"github/JGCRI/osiris": {
-	"id": "github/JGCRI/osiris",
-	"title": "github/JGCRI/osiris",
-	"url": " https://rseng.github.io/software/repository/github/JGCRI/osiris",
-	"content": "Processes climate impacts on agricultural yields for GCAM"
+	"github/kutaslab/fitgrid": {
+	"id": "github/kutaslab/fitgrid",
+	"title": "github/kutaslab/fitgrid",
+	"url": " https://rseng.github.io/software/repository/github/kutaslab/fitgrid",
+	"content": "Multichannel event-related time-series regression modeling for EEG, MEG, and sensor array data"
 	},
-	"github/DSIMB/medusa": {
-	"id": "github/DSIMB/medusa",
-	"title": "github/DSIMB/medusa",
-	"url": " https://rseng.github.io/software/repository/github/DSIMB/medusa",
-	"content": "A Deep Learning based protein flexibility prediction tool."
+	"github/WangLabTHU/DeSP": {
+	"id": "github/WangLabTHU/DeSP",
+	"title": "github/WangLabTHU/DeSP",
+	"url": " https://rseng.github.io/software/repository/github/WangLabTHU/DeSP",
+	"content": "DNA-D2S: a systematic error simulation Model for DNA Data Storage channel"
 	},
-	"github/LeoEgidi/pivmet": {
-	"id": "github/LeoEgidi/pivmet",
-	"title": "github/LeoEgidi/pivmet",
-	"url": " https://rseng.github.io/software/repository/github/LeoEgidi/pivmet",
-	"content": "pivmet: an R package proposing pivotal methods for consensus clustering   and mixture modeling"
+	"github/toshiyan/cmblensplus": {
+	"id": "github/toshiyan/cmblensplus",
+	"title": "github/toshiyan/cmblensplus",
+	"url": " https://rseng.github.io/software/repository/github/toshiyan/cmblensplus",
+	"content": "None"
 	},
-	"github/m2aia/m2aia": {
-	"id": "github/m2aia/m2aia",
-	"title": "github/m2aia/m2aia",
-	"url": " https://rseng.github.io/software/repository/github/m2aia/m2aia",
-	"content": "Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)"
+	"github/christinahedges/contaminante": {
+	"id": "github/christinahedges/contaminante",
+	"title": "github/christinahedges/contaminante",
+	"url": " https://rseng.github.io/software/repository/github/christinahedges/contaminante",
+	"content": "Find the contaminant transiting source in Kepler, K2 or TESS data."
 	},
-	"github/MikkelSchubert/adapterremoval": {
-	"id": "github/MikkelSchubert/adapterremoval",
-	"title": "github/MikkelSchubert/adapterremoval",
-	"url": " https://rseng.github.io/software/repository/github/MikkelSchubert/adapterremoval",
-	"content": "AdapterRemoval v2 - rapid adapter trimming, identification, and read merging"
+	"github/msm550/DMATIS": {
+	"id": "github/msm550/DMATIS",
+	"title": "github/msm550/DMATIS",
+	"url": " https://rseng.github.io/software/repository/github/msm550/DMATIS",
+	"content": "Dark Matter ATtenuation Importance Sampling"
 	},
-	"github/BoevaLab/FREEC": {
-	"id": "github/BoevaLab/FREEC",
-	"title": "github/BoevaLab/FREEC",
-	"url": " https://rseng.github.io/software/repository/github/BoevaLab/FREEC",
-	"content": "Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data"
+	"github/bbye98/mdcraft": {
+	"id": "github/bbye98/mdcraft",
+	"title": "github/bbye98/mdcraft",
+	"url": " https://rseng.github.io/software/repository/github/bbye98/mdcraft",
+	"content": "A Python assistant for performing and analyzing molecular dynamics simulations of soft matter systems"
 	},
-	"github/mtlam/PyPulse": {
-	"id": "github/mtlam/PyPulse",
-	"title": "github/mtlam/PyPulse",
-	"url": " https://rseng.github.io/software/repository/github/mtlam/PyPulse",
-	"content": "Python package for handling and analyzing PSRFITS files"
+	"github/rfeldmann/leopy": {
+	"id": "github/rfeldmann/leopy",
+	"title": "github/rfeldmann/leopy",
+	"url": " https://rseng.github.io/software/repository/github/rfeldmann/leopy",
+	"content": "Likelihood Estimation of Observational data with Python"
 	},
-	"github/vipinagrawal25/MeMC": {
-	"id": "github/vipinagrawal25/MeMC",
-	"title": "github/vipinagrawal25/MeMC",
-	"url": " https://rseng.github.io/software/repository/github/vipinagrawal25/MeMC",
-	"content": "The software mainly has three sections:"
+	"github/danielhuson/dendroscope3": {
+	"id": "github/danielhuson/dendroscope3",
+	"title": "github/danielhuson/dendroscope3",
+	"url": " https://rseng.github.io/software/repository/github/danielhuson/dendroscope3",
+	"content": "Dendroscope program for analyzing and visualizing rooted phylogenetic trees and networks"
 	},
-	"github/BEAST-Fitting/beast": {
-	"id": "github/BEAST-Fitting/beast",
-	"title": "github/BEAST-Fitting/beast",
-	"url": " https://rseng.github.io/software/repository/github/BEAST-Fitting/beast",
-	"content": "Bayesian Extinction And Stellar Tool"
+	"github/danielhuson/megan-ce": {
+	"id": "github/danielhuson/megan-ce",
+	"title": "github/danielhuson/megan-ce",
+	"url": " https://rseng.github.io/software/repository/github/danielhuson/megan-ce",
+	"content": "MEGAN Community Edition"
 	},
-	"github/MingBit/PySCNet": {
-	"id": "github/MingBit/PySCNet",
-	"title": "github/MingBit/PySCNet",
-	"url": " https://rseng.github.io/software/repository/github/MingBit/PySCNet",
-	"content": "A python package for single cell network analysis"
+	"github/danielhuson/malt": {
+	"id": "github/danielhuson/malt",
+	"title": "github/danielhuson/malt",
+	"url": " https://rseng.github.io/software/repository/github/danielhuson/malt",
+	"content": "MEGAN alignment tool"
 	},
-	"github/EGaraldi/ZInCo": {
-	"id": "github/EGaraldi/ZInCo",
-	"title": "github/EGaraldi/ZInCo",
-	"url": " https://rseng.github.io/software/repository/github/EGaraldi/ZInCo",
-	"content": "The ZInCo code for manipulating GADGET initial conditions"
+	"github/danielhuson/jloda": {
+	"id": "github/danielhuson/jloda",
+	"title": "github/danielhuson/jloda",
+	"url": " https://rseng.github.io/software/repository/github/danielhuson/jloda",
+	"content": "JLODA - Java library of data structures and algorithms"
 	},
-	"github/EGaraldi/corecon": {
-	"id": "github/EGaraldi/corecon",
-	"title": "github/EGaraldi/corecon",
-	"url": " https://rseng.github.io/software/repository/github/EGaraldi/corecon",
-	"content": "User-friendly collection of Reionization-related constraints"
+	"github/neuroneural/brainchop": {
+	"id": "github/neuroneural/brainchop",
+	"title": "github/neuroneural/brainchop",
+	"url": " https://rseng.github.io/software/repository/github/neuroneural/brainchop",
+	"content": "Brainchop: In-browser 3D MRI rendering and segmentation"
 	},
-	"github/macs3-project/MACS": {
-	"id": "github/macs3-project/MACS",
-	"title": "github/macs3-project/MACS",
-	"url": " https://rseng.github.io/software/repository/github/macs3-project/MACS",
-	"content": "MACS -- Model-based Analysis of ChIP-Seq"
+	"github/deeprob/ThioesteraseEnzymeSpecificity": {
+	"id": "github/deeprob/ThioesteraseEnzymeSpecificity",
+	"title": "github/deeprob/ThioesteraseEnzymeSpecificity",
+	"url": " https://rseng.github.io/software/repository/github/deeprob/ThioesteraseEnzymeSpecificity",
+	"content": "None"
 	},
-	"github/AusSRC/SoFiAX": {
-	"id": "github/AusSRC/SoFiAX",
-	"title": "github/AusSRC/SoFiAX",
-	"url": " https://rseng.github.io/software/repository/github/AusSRC/SoFiAX",
-	"content": "Source finding application executor"
+	"github/Imperial-visualizations/Physics-Visualizations": {
+	"id": "github/Imperial-visualizations/Physics-Visualizations",
+	"title": "github/Imperial-visualizations/Physics-Visualizations",
+	"url": " https://rseng.github.io/software/repository/github/Imperial-visualizations/Physics-Visualizations",
+	"content": "A computational project at Imperial College London to develop interactive visualizations for education."
 	},
-	"github/jmason86/James-s-EVE-Dimming-Index-JEDI": {
-	"id": "github/jmason86/James-s-EVE-Dimming-Index-JEDI",
-	"title": "github/jmason86/James-s-EVE-Dimming-Index-JEDI",
-	"url": " https://rseng.github.io/software/repository/github/jmason86/James-s-EVE-Dimming-Index-JEDI",
-	"content": "Detect and characterize coronal dimming in the Solar Dynamics Observatory Extreme Ultraviolet Variability Experiment data"
+	"github/esheldon/ngmix": {
+	"id": "github/esheldon/ngmix",
+	"title": "github/esheldon/ngmix",
+	"url": " https://rseng.github.io/software/repository/github/esheldon/ngmix",
+	"content": "Gaussian mixtures and image processing implemented in python"
 	},
-	"github/cas-bioinf/rboAnalyzer": {
-	"id": "github/cas-bioinf/rboAnalyzer",
-	"title": "github/cas-bioinf/rboAnalyzer",
-	"url": " https://rseng.github.io/software/repository/github/cas-bioinf/rboAnalyzer",
-	"content": "Tool for analysing BLAST output for ncRNA sequences"
+	"github/IonRepo/IonDiff": {
+	"id": "github/IonRepo/IonDiff",
+	"title": "github/IonRepo/IonDiff",
+	"url": " https://rseng.github.io/software/repository/github/IonRepo/IonDiff",
+	"content": "Unsupervised identification and analysis of ion-hopping events in solid state electrolytes."
 	},
-	"github/iraf-community/iraf": {
-	"id": "github/iraf-community/iraf",
-	"title": "github/iraf-community/iraf",
-	"url": " https://rseng.github.io/software/repository/github/iraf-community/iraf",
-	"content": "IRAF - Image Reduction and Analysis Facility"
+	"github/ks905383/xagg": {
+	"id": "github/ks905383/xagg",
+	"title": "github/ks905383/xagg",
+	"url": " https://rseng.github.io/software/repository/github/ks905383/xagg",
+	"content": "Aggregating gridded data (xarray) to polygons"
 	},
-	"github/iraf-community/pyraf": {
-	"id": "github/iraf-community/pyraf",
-	"title": "github/iraf-community/pyraf",
-	"url": " https://rseng.github.io/software/repository/github/iraf-community/pyraf",
-	"content": "Command language for IRAF based on Python."
+	"github/opimwue/ddop": {
+	"id": "github/opimwue/ddop",
+	"title": "github/opimwue/ddop",
+	"url": " https://rseng.github.io/software/repository/github/opimwue/ddop",
+	"content": "https://opimwue.github.io/ddop/."
 	},
-	"github/geodynamics/Rayleigh": {
-	"id": "github/geodynamics/Rayleigh",
-	"title": "github/geodynamics/Rayleigh",
-	"url": " https://rseng.github.io/software/repository/github/geodynamics/Rayleigh",
-	"content": "Rayleigh: Pseudo-spectral MHD"
+	"github/nla-group/fABBA": {
+	"id": "github/nla-group/fABBA",
+	"title": "github/nla-group/fABBA",
+	"url": " https://rseng.github.io/software/repository/github/nla-group/fABBA",
+	"content": "A Python library for the fast symbolic approximation of time series"
 	},
-	"github/geodynamics/burnman": {
-	"id": "github/geodynamics/burnman",
-	"title": "github/geodynamics/burnman",
-	"url": " https://rseng.github.io/software/repository/github/geodynamics/burnman",
-	"content": "BurnMan is a library for modeling mantle thermodynamics and thermoelasticity constrained by mineral physics experiments."
+	"github/multiscale/muscle3": {
+	"id": "github/multiscale/muscle3",
+	"title": "github/multiscale/muscle3",
+	"url": " https://rseng.github.io/software/repository/github/multiscale/muscle3",
+	"content": "The third major version of the MUltiScale Coupling Library and Environment"
 	},
-	"github/bwoshea/ZEUS-MP_2": {
-	"id": "github/bwoshea/ZEUS-MP_2",
-	"title": "github/bwoshea/ZEUS-MP_2",
-	"url": " https://rseng.github.io/software/repository/github/bwoshea/ZEUS-MP_2",
-	"content": "This repository is the home of the ZEUS-MP 2.0 code, which was created by John Hayes and others at the Laboratory for Computational Astrophysics at UIUC and UCSD."
+	"github/alchemistry/alchemlyb": {
+	"id": "github/alchemistry/alchemlyb",
+	"title": "github/alchemistry/alchemlyb",
+	"url": " https://rseng.github.io/software/repository/github/alchemistry/alchemlyb",
+	"content": "the simple alchemistry library"
 	},
-	"github/chenwuperth/rgz_rcnn": {
-	"id": "github/chenwuperth/rgz_rcnn",
-	"title": "github/chenwuperth/rgz_rcnn",
-	"url": " https://rseng.github.io/software/repository/github/chenwuperth/rgz_rcnn",
-	"content": "ClaRAN: A deep learning classifier for radio morphologies"
+	"github/nuclear-multimessenger-astronomy/nmma": {
+	"id": "github/nuclear-multimessenger-astronomy/nmma",
+	"title": "github/nuclear-multimessenger-astronomy/nmma",
+	"url": " https://rseng.github.io/software/repository/github/nuclear-multimessenger-astronomy/nmma",
+	"content": "A pythonic library for probing nuclear physics and cosmology with multimessenger analysis"
 	},
-	"github/bmoster/emerge": {
-	"id": "github/bmoster/emerge",
-	"title": "github/bmoster/emerge",
-	"url": " https://rseng.github.io/software/repository/github/bmoster/emerge",
-	"content": "Emerge - the smooth empirical model for galaxy formation"
+	"github/NETL-RIC/URC-Assessment-Method": {
+	"id": "github/NETL-RIC/URC-Assessment-Method",
+	"title": "github/NETL-RIC/URC-Assessment-Method",
+	"url": " https://rseng.github.io/software/repository/github/NETL-RIC/URC-Assessment-Method",
+	"content": "Tool for evaluating the potential occurrence of URC resources using a series of validated heuristics."
 	},
-	"github/jpahlers/LASR": {
-	"id": "github/jpahlers/LASR",
-	"title": "github/jpahlers/LASR",
-	"url": " https://rseng.github.io/software/repository/github/jpahlers/LASR",
-	"content": "Code and dependencies for the Linear Algorithm for Significance Reduction, developed by various members of the University of Idaho&#39;s Department of Physics."
+	"github/HajimeKawahara/juwvid": {
+	"id": "github/HajimeKawahara/juwvid",
+	"title": "github/HajimeKawahara/juwvid",
+	"url": " https://rseng.github.io/software/repository/github/HajimeKawahara/juwvid",
+	"content": "Julia code for the time-frequency analysis"
 	},
-	"github/desihub/desitarget": {
-	"id": "github/desihub/desitarget",
-	"title": "github/desihub/desitarget",
-	"url": " https://rseng.github.io/software/repository/github/desihub/desitarget",
-	"content": "DESI Targeting"
+	"github/HajimeKawahara/sot": {
+	"id": "github/HajimeKawahara/sot",
+	"title": "github/HajimeKawahara/sot",
+	"url": " https://rseng.github.io/software/repository/github/HajimeKawahara/sot",
+	"content": "Python package for taking a photo and movie of an exo Earth"
 	},
-	"github/desihub/fastspecfit": {
-	"id": "github/desihub/fastspecfit",
-	"title": "github/desihub/fastspecfit",
-	"url": " https://rseng.github.io/software/repository/github/desihub/fastspecfit",
-	"content": "Fast (simple) spectral synthesis and emission-line fitting of DESI spectra."
+	"github/HajimeKawahara/exojax": {
+	"id": "github/HajimeKawahara/exojax",
+	"title": "github/HajimeKawahara/exojax",
+	"url": " https://rseng.github.io/software/repository/github/HajimeKawahara/exojax",
+	"content": "🐈 Automatic differentiable spectrum modeling of exoplanets/brown dwarfs using JAX, compatible with NumPyro and JAXopt"
 	},
-	"github/srdc/onfhir": {
-	"id": "github/srdc/onfhir",
-	"title": "github/srdc/onfhir",
-	"url": " https://rseng.github.io/software/repository/github/srdc/onfhir",
-	"content": "HL7 FHIR Based Secure Data Repository"
+	"github/PetroFit/petrofit": {
+	"id": "github/PetroFit/petrofit",
+	"title": "github/PetroFit/petrofit",
+	"url": " https://rseng.github.io/software/repository/github/PetroFit/petrofit",
+	"content": "Package for calculating Petrosian properties and fitting galaxy light profiles"
 	},
-	"github/FrederickHuangLin/ANCOMBC": {
-	"id": "github/FrederickHuangLin/ANCOMBC",
-	"title": "github/FrederickHuangLin/ANCOMBC",
-	"url": " https://rseng.github.io/software/repository/github/FrederickHuangLin/ANCOMBC",
-	"content": "Differential abundance (DA) and correlation analyses for microbial absolute abundance data"
+	"github/brunettsp/myosothes": {
+	"id": "github/brunettsp/myosothes",
+	"title": "github/brunettsp/myosothes",
+	"url": " https://rseng.github.io/software/repository/github/brunettsp/myosothes",
+	"content": "An automated Myofibers Segmentation wOrkflow Tuned for HE Staining"
 	},
-	"github/NSAPH-Software/GPCERF": {
-	"id": "github/NSAPH-Software/GPCERF",
-	"title": "github/NSAPH-Software/GPCERF",
-	"url": " https://rseng.github.io/software/repository/github/NSAPH-Software/GPCERF",
-	"content": "None"
+	"github/ronshnapp/MyPTV": {
+	"id": "github/ronshnapp/MyPTV",
+	"title": "github/ronshnapp/MyPTV",
+	"url": " https://rseng.github.io/software/repository/github/ronshnapp/MyPTV",
+	"content": "MyPTV is an open source library designed for 3D particle Tracking (3D-PTV) measurements"
 	},
-	"github/NSAPH-Software/CRE": {
-	"id": "github/NSAPH-Software/CRE",
-	"title": "github/NSAPH-Software/CRE",
-	"url": " https://rseng.github.io/software/repository/github/NSAPH-Software/CRE",
-	"content": "The Causal Rule Ensemble Method"
+	"github/msalibian/RBF": {
+	"id": "github/msalibian/RBF",
+	"title": "github/msalibian/RBF",
+	"url": " https://rseng.github.io/software/repository/github/msalibian/RBF",
+	"content": "A Robust backfitting algorithm"
 	},
-	"github/scrook/neuroml-db": {
-	"id": "github/scrook/neuroml-db",
-	"title": "github/scrook/neuroml-db",
-	"url": " https://rseng.github.io/software/repository/github/scrook/neuroml-db",
-	"content": "database of neuroml models"
+	"github/RAMP-project/RAMP": {
+	"id": "github/RAMP-project/RAMP",
+	"title": "github/RAMP-project/RAMP",
+	"url": " https://rseng.github.io/software/repository/github/RAMP-project/RAMP",
+	"content": "Repository of the open-source RAMP model for generating multi-energy loads profiles"
 	},
-	"github/flintproject/Flint": {
-	"id": "github/flintproject/Flint",
-	"title": "github/flintproject/Flint",
-	"url": " https://rseng.github.io/software/repository/github/flintproject/Flint",
-	"content": "A simulator for biological and physiological models"
+	"github/chocoteam/choco-solver": {
+	"id": "github/chocoteam/choco-solver",
+	"title": "github/chocoteam/choco-solver",
+	"url": " https://rseng.github.io/software/repository/github/chocoteam/choco-solver",
+	"content": "An open-source Java library for Constraint Programming"
 	},
-	"github/jveitchmichaelis/pygadgetreader": {
-	"id": "github/jveitchmichaelis/pygadgetreader",
-	"title": "github/jveitchmichaelis/pygadgetreader",
-	"url": " https://rseng.github.io/software/repository/github/jveitchmichaelis/pygadgetreader",
-	"content": "A mirror of pygadgetreader because BItbucket stopped hosting Mercurial repos (and we needed it now!)"
+	"github/kathrinnp/DarkRayNet": {
+	"id": "github/kathrinnp/DarkRayNet",
+	"title": "github/kathrinnp/DarkRayNet",
+	"url": " https://rseng.github.io/software/repository/github/kathrinnp/DarkRayNet",
+	"content": "Quick cosmic ray antiproton simulations for dark matter annihilation models using neural networks"
 	},
-	"github/aakepley/autobox": {
-	"id": "github/aakepley/autobox",
-	"title": "github/aakepley/autobox",
-	"url": " https://rseng.github.io/software/repository/github/aakepley/autobox",
-	"content": "Prototype of an autoboxing routine for tclean"
+	"github/insilico/cncv": {
+	"id": "github/insilico/cncv",
+	"title": "github/insilico/cncv",
+	"url": " https://rseng.github.io/software/repository/github/insilico/cncv",
+	"content": "Consensus Nested Cross-Validation"
 	},
-	"github/PdIPS/CBX": {
-	"id": "github/PdIPS/CBX",
-	"title": "github/PdIPS/CBX",
-	"url": " https://rseng.github.io/software/repository/github/PdIPS/CBX",
-	"content": "None"
+	"github/galactic-ai/haloflow": {
+	"id": "github/galactic-ai/haloflow",
+	"title": "github/galactic-ai/haloflow",
+	"url": " https://rseng.github.io/software/repository/github/galactic-ai/haloflow",
+	"content": "Simulation-Based Inference (SBI) using forward modeled galaxy photometry"
 	},
-	"github/EhsanGharibNezhad/TelescopeML": {
-	"id": "github/EhsanGharibNezhad/TelescopeML",
-	"title": "github/EhsanGharibNezhad/TelescopeML",
-	"url": " https://rseng.github.io/software/repository/github/EhsanGharibNezhad/TelescopeML",
-	"content": "Deep Convolutional Neural Networks and Machine Learning Models for Analyzing Stellar and Exoplanetary Telescope Spectra"
+	"github/hannorein/rebound": {
+	"id": "github/hannorein/rebound",
+	"title": "github/hannorein/rebound",
+	"url": " https://rseng.github.io/software/repository/github/hannorein/rebound",
+	"content": "💫 An open-source multi-purpose N-body code."
 	},
-	"github/wesleyburr/subMaldi": {
-	"id": "github/wesleyburr/subMaldi",
-	"title": "github/wesleyburr/subMaldi",
-	"url": " https://rseng.github.io/software/repository/github/wesleyburr/subMaldi",
-	"content": "subMaldi: a package for R"
+	"github/DavidT3/DAXA": {
+	"id": "github/DavidT3/DAXA",
+	"title": "github/DavidT3/DAXA",
+	"url": " https://rseng.github.io/software/repository/github/DavidT3/DAXA",
+	"content": "Democratising Archival X-ray Astronomy (DAXA) is an easy-to-use Python module for downloading multi-mission X-ray telescope data and processing it into usable archives. Users can acquire entire archives, or filter observations based on ID/positions/time. Supports XMM; partial support eROSITA, Chandra, NuSTAR, Swift, Suzaku, ASCA, ROSAT, INTEGRAL"
 	},
-	"github/me-manu/gammaALPs": {
-	"id": "github/me-manu/gammaALPs",
-	"title": "github/me-manu/gammaALPs",
-	"url": " https://rseng.github.io/software/repository/github/me-manu/gammaALPs",
-	"content": "A python code to calculate the conversion probability between photons and axions / axionlike particles"
+	"github/DavidT3/XGA": {
+	"id": "github/DavidT3/XGA",
+	"title": "github/DavidT3/XGA",
+	"url": " https://rseng.github.io/software/repository/github/DavidT3/XGA",
+	"content": "X-ray: Generate and Analyse is a module designed to make the analysis of XMM observations simple and efficient. It provides an interface with SAS for the creation of XMM data products, as well as a way to easily perform fits (scalable for multiple observations) and retrieve information about an object, all within a Python package. "
 	},
-	"github/ahwkuepper/mcluster": {
-	"id": "github/ahwkuepper/mcluster",
-	"title": "github/ahwkuepper/mcluster",
-	"url": " https://rseng.github.io/software/repository/github/ahwkuepper/mcluster",
-	"content": "McLuster - a tool to make a star cluster"
+	"github/SimCab-CHU/ifCNVR": {
+	"id": "github/SimCab-CHU/ifCNVR",
+	"title": "github/SimCab-CHU/ifCNVR",
+	"url": " https://rseng.github.io/software/repository/github/SimCab-CHU/ifCNVR",
+	"content": "ifCNV R package"
 	},
-	"github/SamDuffield/bmm": {
-	"id": "github/SamDuffield/bmm",
-	"title": "github/SamDuffield/bmm",
-	"url": " https://rseng.github.io/software/repository/github/SamDuffield/bmm",
-	"content": "Map-matching using particle smoothing methods."
+	"github/dicompyler/dicompyler-core": {
+	"id": "github/dicompyler/dicompyler-core",
+	"title": "github/dicompyler/dicompyler-core",
+	"url": " https://rseng.github.io/software/repository/github/dicompyler/dicompyler-core",
+	"content": "A library of core radiation therapy modules for DICOM RT used by dicompyler"
 	},
-	"github/mmahmoudian/sivs": {
-	"id": "github/mmahmoudian/sivs",
-	"title": "github/mmahmoudian/sivs",
-	"url": " https://rseng.github.io/software/repository/github/mmahmoudian/sivs",
-	"content": "An iterative feature selection method that internally utilizes varius Machine Learning methods that have embeded feature reduction in order to shrink down the feature space into a small and yet robust set."
+	"github/hippke/PyOSE": {
+	"id": "github/hippke/PyOSE",
+	"title": "github/hippke/PyOSE",
+	"url": " https://rseng.github.io/software/repository/github/hippke/PyOSE",
+	"content": "Stacked exomoons with the Orbital Sampling Effect"
 	},
-	"github/jeaadams/ExoPix": {
-	"id": "github/jeaadams/ExoPix",
-	"title": "github/jeaadams/ExoPix",
-	"url": " https://rseng.github.io/software/repository/github/jeaadams/ExoPix",
-	"content": "None"
+	"github/hippke/tls": {
+	"id": "github/hippke/tls",
+	"title": "github/hippke/tls",
+	"url": " https://rseng.github.io/software/repository/github/hippke/tls",
+	"content": "Transit Least Squares: An optimized transit-fitting algorithm to search for periodic transits of small planets"
 	},
-	"github/AngryMaciek/hypercomplex": {
-	"id": "github/AngryMaciek/hypercomplex",
-	"title": "github/AngryMaciek/hypercomplex",
-	"url": " https://rseng.github.io/software/repository/github/AngryMaciek/hypercomplex",
-	"content": "Abstract &amp; fast header-only C++ template library for lattice-based cryptosystems in high-dimensional algebras"
+	"github/hippke/wotan": {
+	"id": "github/hippke/wotan",
+	"title": "github/hippke/wotan",
+	"url": " https://rseng.github.io/software/repository/github/hippke/wotan",
+	"content": "Automagically remove trends from time-series data"
 	},
-	"github/Magritte-code/Magritte": {
-	"id": "github/Magritte-code/Magritte",
-	"title": "github/Magritte-code/Magritte",
-	"url": " https://rseng.github.io/software/repository/github/Magritte-code/Magritte",
-	"content": "A modern software library for simulating radiation transport."
+	"github/hippke/communication": {
+	"id": "github/hippke/communication",
+	"title": "github/hippke/communication",
+	"url": " https://rseng.github.io/software/repository/github/hippke/communication",
+	"content": "Interstellar communication"
 	},
-	"github/Magritte-code/pomme": {
-	"id": "github/Magritte-code/pomme",
-	"title": "github/Magritte-code/pomme",
-	"url": " https://rseng.github.io/software/repository/github/Magritte-code/pomme",
-	"content": "Bayesian model reconstruction based on astronomical spectral line observations."
+	"github/hippke/pandora": {
+	"id": "github/hippke/pandora",
+	"title": "github/hippke/pandora",
+	"url": " https://rseng.github.io/software/repository/github/hippke/pandora",
+	"content": "A fast transit-fitting algorithm to search for transits of exomoons"
 	},
-	"github/mjuric/galfast": {
-	"id": "github/mjuric/galfast",
-	"title": "github/mjuric/galfast",
-	"url": " https://rseng.github.io/software/repository/github/mjuric/galfast",
-	"content": "Milky Way Mock Catalog Generator"
+	"github/hknd23/idcempy": {
+	"id": "github/hknd23/idcempy",
+	"title": "github/hknd23/idcempy",
+	"url": " https://rseng.github.io/software/repository/github/hknd23/idcempy",
+	"content": "Inflated Discrete Choice Models"
 	},
-	"github/souzamonteiro/cnatool": {
-	"id": "github/souzamonteiro/cnatool",
-	"title": "github/souzamonteiro/cnatool",
-	"url": " https://rseng.github.io/software/repository/github/souzamonteiro/cnatool",
-	"content": "Complex Network Analysis Tool"
+	"github/fgbuster/fgbuster": {
+	"id": "github/fgbuster/fgbuster",
+	"title": "github/fgbuster/fgbuster",
+	"url": " https://rseng.github.io/software/repository/github/fgbuster/fgbuster",
+	"content": "Parametric component separation for Cosmic Microwave Background observations"
 	},
-	"github/seshnadathur/Revolver": {
-	"id": "github/seshnadathur/Revolver",
-	"title": "github/seshnadathur/Revolver",
-	"url": " https://rseng.github.io/software/repository/github/seshnadathur/Revolver",
-	"content": "Real-space void locations from survey reconstruction"
+	"github/gogrean/PyXel": {
+	"id": "github/gogrean/PyXel",
+	"title": "github/gogrean/PyXel",
+	"url": " https://rseng.github.io/software/repository/github/gogrean/PyXel",
+	"content": "Package for modeling X-ray surface brightness profiles."
 	},
-	"github/JanLeppert/GasChromatographySimulator.jl": {
-	"id": "github/JanLeppert/GasChromatographySimulator.jl",
-	"title": "github/JanLeppert/GasChromatographySimulator.jl",
-	"url": " https://rseng.github.io/software/repository/github/JanLeppert/GasChromatographySimulator.jl",
-	"content": "A package for the simulation of gas chromatography (GC)"
+	"github/GaryBAYLOR/mixR": {
+	"id": "github/GaryBAYLOR/mixR",
+	"title": "github/GaryBAYLOR/mixR",
+	"url": " https://rseng.github.io/software/repository/github/GaryBAYLOR/mixR",
+	"content": "R package for fitting finite mixture models for both raw and binned data"
 	},
-	"github/julblarod/SOPHISM": {
-	"id": "github/julblarod/SOPHISM",
-	"title": "github/julblarod/SOPHISM",
-	"url": " https://rseng.github.io/software/repository/github/julblarod/SOPHISM",
-	"content": "Repository for software instrument simulator SOPHISM"
+	"github/bthorne93/PySM_public": {
+	"id": "github/bthorne93/PySM_public",
+	"title": "github/bthorne93/PySM_public",
+	"url": " https://rseng.github.io/software/repository/github/bthorne93/PySM_public",
+	"content": "PySM: Software for simulating the Galactic microwave sky"
 	},
-	"github/lskatz/fasten": {
-	"id": "github/lskatz/fasten",
-	"title": "github/lskatz/fasten",
-	"url": " https://rseng.github.io/software/repository/github/lskatz/fasten",
-	"content": ":construction_worker: Fasten toolkit, for streaming operations on fastq files"
+	"github/elixir-luxembourg/daisy": {
+	"id": "github/elixir-luxembourg/daisy",
+	"title": "github/elixir-luxembourg/daisy",
+	"url": " https://rseng.github.io/software/repository/github/elixir-luxembourg/daisy",
+	"content": "Data Information System (DAISY) is a data bookkeeping application designed to help Biomedical Research  institutions with their GDPR compliance."
 	},
-	"github/lskatz/SneakerNet": {
-	"id": "github/lskatz/SneakerNet",
-	"title": "github/lskatz/SneakerNet",
-	"url": " https://rseng.github.io/software/repository/github/lskatz/SneakerNet",
-	"content": ":feet: QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run"
+	"github/andrew-saydjari/CloudCovErr.jl": {
+	"id": "github/andrew-saydjari/CloudCovErr.jl",
+	"title": "github/andrew-saydjari/CloudCovErr.jl",
+	"url": " https://rseng.github.io/software/repository/github/andrew-saydjari/CloudCovErr.jl",
+	"content": "Pipeline for debiasing and improving error bar estimates for photometry on top of structured/filamentary background."
 	},
-	"github/fair-data/fairdatapoint-client": {
-	"id": "github/fair-data/fairdatapoint-client",
-	"title": "github/fair-data/fairdatapoint-client",
-	"url": " https://rseng.github.io/software/repository/github/fair-data/fairdatapoint-client",
-	"content": "Interact with your resources (catalogs/datasets/distributions) in a FDP using python"
+	"github/jfalconbarroso/BAYES-LOSVD": {
+	"id": "github/jfalconbarroso/BAYES-LOSVD",
+	"title": "github/jfalconbarroso/BAYES-LOSVD",
+	"url": " https://rseng.github.io/software/repository/github/jfalconbarroso/BAYES-LOSVD",
+	"content": "Non-parametric recovery of the LOSVD of galaxies"
 	},
-	"github/pinellolab/STREAM": {
-	"id": "github/pinellolab/STREAM",
-	"title": "github/pinellolab/STREAM",
-	"url": " https://rseng.github.io/software/repository/github/pinellolab/STREAM",
-	"content": "STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data"
+	"github/FZJ-PGI-12/QAOA.jl": {
+	"id": "github/FZJ-PGI-12/QAOA.jl",
+	"title": "github/FZJ-PGI-12/QAOA.jl",
+	"url": " https://rseng.github.io/software/repository/github/FZJ-PGI-12/QAOA.jl",
+	"content": "None"
 	},
-	"github/pinellolab/CRISPRitz": {
-	"id": "github/pinellolab/CRISPRitz",
-	"title": "github/pinellolab/CRISPRitz",
-	"url": " https://rseng.github.io/software/repository/github/pinellolab/CRISPRitz",
-	"content": "a software package containing 5 different tools dedicated to perform predictive analysis and result assessement on CRISPR/Cas experiments."
+	"github/njcuk9999/apero-drs": {
+	"id": "github/njcuk9999/apero-drs",
+	"title": "github/njcuk9999/apero-drs",
+	"url": " https://rseng.github.io/software/repository/github/njcuk9999/apero-drs",
+	"content": "A PipelinE to Reduce Observations - The DRS for SPIRou (CFHT)"
 	},
-	"github/pinellolab/CRISPResso2": {
-	"id": "github/pinellolab/CRISPResso2",
-	"title": "github/pinellolab/CRISPResso2",
-	"url": " https://rseng.github.io/software/repository/github/pinellolab/CRISPResso2",
-	"content": "Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments"
+	"github/nmslib/hnswlib": {
+	"id": "github/nmslib/hnswlib",
+	"title": "github/nmslib/hnswlib",
+	"url": " https://rseng.github.io/software/repository/github/nmslib/hnswlib",
+	"content": "Header-only C++/python library for fast approximate nearest neighbors"
 	},
-	"github/ParisAstronomicalDataCentre/OPUS": {
-	"id": "github/ParisAstronomicalDataCentre/OPUS",
-	"title": "github/ParisAstronomicalDataCentre/OPUS",
-	"url": " https://rseng.github.io/software/repository/github/ParisAstronomicalDataCentre/OPUS",
-	"content": "Observatoire de Paris UWS System (OPUS):  UWS web client/server developped at the Paris Astronomical Data Centre."
+	"github/krober10nd/SeismicMesh": {
+	"id": "github/krober10nd/SeismicMesh",
+	"title": "github/krober10nd/SeismicMesh",
+	"url": " https://rseng.github.io/software/repository/github/krober10nd/SeismicMesh",
+	"content": "2D/3D serial and parallel triangular mesh generation tool for Finite Element Methods."
 	},
-	"github/omuse-geoscience/omuse": {
-	"id": "github/omuse-geoscience/omuse",
-	"title": "github/omuse-geoscience/omuse",
-	"url": " https://rseng.github.io/software/repository/github/omuse-geoscience/omuse",
-	"content": " The Oceanographic Multi-purpose Software Environment: a package for multi-physics and multi-scale earth science simulations."
+	"github/cmzmasek/forester": {
+	"id": "github/cmzmasek/forester",
+	"title": "github/cmzmasek/forester",
+	"url": " https://rseng.github.io/software/repository/github/cmzmasek/forester",
+	"content": "forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research"
 	},
-	"github/BU-ISCIII/taranis": {
-	"id": "github/BU-ISCIII/taranis",
-	"title": "github/BU-ISCIII/taranis",
-	"url": " https://rseng.github.io/software/repository/github/BU-ISCIII/taranis",
-	"content": "cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch."
+	"github/ezer/PAFway": {
+	"id": "github/ezer/PAFway",
+	"title": "github/ezer/PAFway",
+	"url": " https://rseng.github.io/software/repository/github/ezer/PAFway",
+	"content": "functional associations in networks"
 	},
-	"github/BU-ISCIII/plasmidID": {
-	"id": "github/BU-ISCIII/plasmidID",
-	"title": "github/BU-ISCIII/plasmidID",
-	"url": " https://rseng.github.io/software/repository/github/BU-ISCIII/plasmidID",
-	"content": "PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification."
+	"github/bandframework/Taweret": {
+	"id": "github/bandframework/Taweret",
+	"title": "github/bandframework/Taweret",
+	"url": " https://rseng.github.io/software/repository/github/bandframework/Taweret",
+	"content": "Python  package for Bayesian Model Mixing"
 	},
-	"github/BU-ISCIII/iSkyLIMS": {
-	"id": "github/BU-ISCIII/iSkyLIMS",
-	"title": "github/BU-ISCIII/iSkyLIMS",
-	"url": " https://rseng.github.io/software/repository/github/BU-ISCIII/iSkyLIMS",
-	"content": "is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management."
+	"github/LQYoLH/CnnCrispr": {
+	"id": "github/LQYoLH/CnnCrispr",
+	"title": "github/LQYoLH/CnnCrispr",
+	"url": " https://rseng.github.io/software/repository/github/LQYoLH/CnnCrispr",
+	"content": "A deep learning method for sgRNA off-target propensity prediction."
 	},
-	"github/wiki/Install-macs2": {
-	"id": "github/wiki/Install-macs2",
-	"title": "github/wiki/Install-macs2",
-	"url": " https://rseng.github.io/software/repository/github/wiki/Install-macs2",
-	"content": "(Model Based Analysis of ChIP-Seq data) a novel algorithm for identifying transcript factor binding sites."
+	"github/hcdenbakker/SalmID": {
+	"id": "github/hcdenbakker/SalmID",
+	"title": "github/hcdenbakker/SalmID",
+	"url": " https://rseng.github.io/software/repository/github/hcdenbakker/SalmID",
+	"content": "Rapid confirmation of Salmonella spp. and subspp. from sequence data"
 	},
-	"github/ViennaRNA/RNAblueprint": {
-	"id": "github/ViennaRNA/RNAblueprint",
-	"title": "github/ViennaRNA/RNAblueprint",
-	"url": " https://rseng.github.io/software/repository/github/ViennaRNA/RNAblueprint",
-	"content": "RNAblueprint library for uniform sampling of RNA sequences given structural and sequence constraints"
+	"github/hcdenbakker/sepia": {
+	"id": "github/hcdenbakker/sepia",
+	"title": "github/hcdenbakker/sepia",
+	"url": " https://rseng.github.io/software/repository/github/hcdenbakker/sepia",
+	"content": "taxonomic classifier based on the kraken2 algorithms and more"
 	},
-	"github/apcamargo/prodigal-gv": {
-	"id": "github/apcamargo/prodigal-gv",
-	"title": "github/apcamargo/prodigal-gv",
-	"url": " https://rseng.github.io/software/repository/github/apcamargo/prodigal-gv",
-	"content": "A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes"
+	"github/jmason86/James-s-EVE-Dimming-Index-JEDI": {
+	"id": "github/jmason86/James-s-EVE-Dimming-Index-JEDI",
+	"title": "github/jmason86/James-s-EVE-Dimming-Index-JEDI",
+	"url": " https://rseng.github.io/software/repository/github/jmason86/James-s-EVE-Dimming-Index-JEDI",
+	"content": "Detect and characterize coronal dimming in the Solar Dynamics Observatory Extreme Ultraviolet Variability Experiment data"
 	},
-	"github/hydrosolutions/riversCentralAsia": {
-	"id": "github/hydrosolutions/riversCentralAsia",
-	"title": "github/hydrosolutions/riversCentralAsia",
-	"url": " https://rseng.github.io/software/repository/github/hydrosolutions/riversCentralAsia",
-	"content": "Package with helper functions to load, manage and analyze hydrometeorological data from Central Asia"
+	"github/rikenbit/nnTensor": {
+	"id": "github/rikenbit/nnTensor",
+	"title": "github/rikenbit/nnTensor",
+	"url": " https://rseng.github.io/software/repository/github/rikenbit/nnTensor",
+	"content": "R package for Non-negative Tensor Decomposition"
 	},
-	"github/recipy/recipy": {
-	"id": "github/recipy/recipy",
-	"title": "github/recipy/recipy",
-	"url": " https://rseng.github.io/software/repository/github/recipy/recipy",
-	"content": "Effortless method to record provenance in Python"
+	"github/rikenbit/dcTensor": {
+	"id": "github/rikenbit/dcTensor",
+	"title": "github/rikenbit/dcTensor",
+	"url": " https://rseng.github.io/software/repository/github/rikenbit/dcTensor",
+	"content": "R package for Discrete Matrix/Tensor Decomposition"
 	},
-	"github/Zstone19/pypetal": {
-	"id": "github/Zstone19/pypetal",
-	"title": "github/Zstone19/pypetal",
-	"url": " https://rseng.github.io/software/repository/github/Zstone19/pypetal",
-	"content": "A pipeline for estimating AGN time lags"
+	"github/rikenbit/iTensor": {
+	"id": "github/rikenbit/iTensor",
+	"title": "github/rikenbit/iTensor",
+	"url": " https://rseng.github.io/software/repository/github/rikenbit/iTensor",
+	"content": "R package for ICA-based Matrix/Tensor Decomposition"
 	},
-	"github/BioComputingUP/ring-pymol": {
-	"id": "github/BioComputingUP/ring-pymol",
-	"title": "github/BioComputingUP/ring-pymol",
-	"url": " https://rseng.github.io/software/repository/github/BioComputingUP/ring-pymol",
-	"content": "This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua"
+	"github/tloredo/CUDAHM": {
+	"id": "github/tloredo/CUDAHM",
+	"title": "github/tloredo/CUDAHM",
+	"url": " https://rseng.github.io/software/repository/github/tloredo/CUDAHM",
+	"content": "Routines for using CUDA to perform MCMC Sampling of Hierarchical Models with GPUs."
 	},
-	"github/francescoa97outlook/pyExoRaMa": {
-	"id": "github/francescoa97outlook/pyExoRaMa",
-	"title": "github/francescoa97outlook/pyExoRaMa",
-	"url": " https://rseng.github.io/software/repository/github/francescoa97outlook/pyExoRaMa",
+	"github/PopGenClustering/Clumppling": {
+	"id": "github/PopGenClustering/Clumppling",
+	"title": "github/PopGenClustering/Clumppling",
+	"url": " https://rseng.github.io/software/repository/github/PopGenClustering/Clumppling",
 	"content": "None"
 	},
-	"github/dhubber/seren": {
-	"id": "github/dhubber/seren",
-	"title": "github/dhubber/seren",
-	"url": " https://rseng.github.io/software/repository/github/dhubber/seren",
-	"content": "SEREN SPH code (Hubber et al. 2011) for astrophysical hydrodynamics simulations"
+	"github/radiosunpy/RadioSunPy": {
+	"id": "github/radiosunpy/RadioSunPy",
+	"title": "github/radiosunpy/RadioSunPy",
+	"url": " https://rseng.github.io/software/repository/github/radiosunpy/RadioSunPy",
+	"content": "RATAN-600 radioastronomical solar data and methods Python library "
 	},
-	"github/barbagroup/geoclaw-landspill": {
-	"id": "github/barbagroup/geoclaw-landspill",
-	"title": "github/barbagroup/geoclaw-landspill",
-	"url": " https://rseng.github.io/software/repository/github/barbagroup/geoclaw-landspill",
-	"content": "An oil land-spill and overland flow simulator for pipeline rupture events"
+	"github/WatsonLab/MAGpy": {
+	"id": "github/WatsonLab/MAGpy",
+	"title": "github/WatsonLab/MAGpy",
+	"url": " https://rseng.github.io/software/repository/github/WatsonLab/MAGpy",
+	"content": "Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)"
 	},
-	"github/umbralcalc/nfield": {
-	"id": "github/umbralcalc/nfield",
-	"title": "github/umbralcalc/nfield",
-	"url": " https://rseng.github.io/software/repository/github/umbralcalc/nfield",
-	"content": "Code for generally computing IR correlators during inflation with n-field dimensions - makes use of the formalism of Stochastic Inflation and hence &#39;mlsolver&#39;"
+	"github/fhtouma/subgen2": {
+	"id": "github/fhtouma/subgen2",
+	"title": "github/fhtouma/subgen2",
+	"url": " https://rseng.github.io/software/repository/github/fhtouma/subgen2",
+	"content": "None"
 	},
-	"github/umbralcalc/helmpy": {
-	"id": "github/umbralcalc/helmpy",
-	"title": "github/umbralcalc/helmpy",
-	"url": " https://rseng.github.io/software/repository/github/umbralcalc/helmpy",
-	"content": "An all-in-one python class for optimised stochastic simulation and forecasting the effect of mass drug administration on helminth (parasitic worm) disease transmission"
+	"github/avigan/SPHERE": {
+	"id": "github/avigan/SPHERE",
+	"title": "github/avigan/SPHERE",
+	"url": " https://rseng.github.io/software/repository/github/avigan/SPHERE",
+	"content": "Reduction and analysis code for the VLT/SPHERE instrument"
 	},
-	"github/umbralcalc/foxi": {
-	"id": "github/umbralcalc/foxi",
-	"title": "github/umbralcalc/foxi",
-	"url": " https://rseng.github.io/software/repository/github/umbralcalc/foxi",
-	"content": "Futuristic Observations and their eXpected Information: package for automated computation of a suite of information-theoretic and Bayesian expected utilities for deciding between scientific experimental designs "
+	"github/avigan/pyZELDA": {
+	"id": "github/avigan/pyZELDA",
+	"title": "github/avigan/pyZELDA",
+	"url": " https://rseng.github.io/software/repository/github/avigan/pyZELDA",
+	"content": "Zernike wavefront sensor analysis and simulation tools"
 	},
-	"github/sevimcengiz/Oryx-MRSI": {
-	"id": "github/sevimcengiz/Oryx-MRSI",
-	"title": "github/sevimcengiz/Oryx-MRSI",
-	"url": " https://rseng.github.io/software/repository/github/sevimcengiz/Oryx-MRSI",
-	"content": "None"
+	"github/USU-Analytics-Solution-Center/Bruno.jl": {
+	"id": "github/USU-Analytics-Solution-Center/Bruno.jl",
+	"title": "github/USU-Analytics-Solution-Center/Bruno.jl",
+	"url": " https://rseng.github.io/software/repository/github/USU-Analytics-Solution-Center/Bruno.jl",
+	"content": "Repository for the Julia package with financial tools for data generation, asset pricing and strategy testing"
 	},
-	"github/sumn2u/annotate-lab": {
-	"id": "github/sumn2u/annotate-lab",
-	"title": "github/sumn2u/annotate-lab",
-	"url": " https://rseng.github.io/software/repository/github/sumn2u/annotate-lab",
-	"content": "Annotate-lab is an open-source image annotation tool for efficient dataset creation. With an intuitive interface and flexible export options, it streamlines your machine learning workflow. 🖼️✏️📑"
+	"github/vrodgom/statmorph": {
+	"id": "github/vrodgom/statmorph",
+	"title": "github/vrodgom/statmorph",
+	"url": " https://rseng.github.io/software/repository/github/vrodgom/statmorph",
+	"content": "Python code for calculating non-parametric morphological diagnostics of galaxy images."
+	},
+	"github/jveitchmichaelis/pygadgetreader": {
+	"id": "github/jveitchmichaelis/pygadgetreader",
+	"title": "github/jveitchmichaelis/pygadgetreader",
+	"url": " https://rseng.github.io/software/repository/github/jveitchmichaelis/pygadgetreader",
+	"content": "A mirror of pygadgetreader because BItbucket stopped hosting Mercurial repos (and we needed it now!)"
 	},
-	"github/manzt/anywidget": {
-	"id": "github/manzt/anywidget",
-	"title": "github/manzt/anywidget",
-	"url": " https://rseng.github.io/software/repository/github/manzt/anywidget",
-	"content": "reusable widgets made easy"
+	"github/adigenova/wengan": {
+	"id": "github/adigenova/wengan",
+	"title": "github/adigenova/wengan",
+	"url": " https://rseng.github.io/software/repository/github/adigenova/wengan",
+	"content": "An accurate and ultra-fast hybrid genome assembler"
 	},
-	"github/Dfupa/meTAline": {
-	"id": "github/Dfupa/meTAline",
-	"title": "github/Dfupa/meTAline",
-	"url": " https://rseng.github.io/software/repository/github/Dfupa/meTAline",
-	"content": "WGS pipeline implementation in Snakemake"
+	"github/kylemede/ExoSOFT": {
+	"id": "github/kylemede/ExoSOFT",
+	"title": "github/kylemede/ExoSOFT",
+	"url": " https://rseng.github.io/software/repository/github/kylemede/ExoSOFT",
+	"content": "The Exoplanet Simple Orbit Fitting Toolbox (ExoSOFT).  Solves for the orbital elements of any single companion, provided observed radial velocity and/or astrometry."
 	},
-	"github/ElsevierSoftwareX/SOFTX_2020_119": {
-	"id": "github/ElsevierSoftwareX/SOFTX_2020_119",
-	"title": "github/ElsevierSoftwareX/SOFTX_2020_119",
-	"url": " https://rseng.github.io/software/repository/github/ElsevierSoftwareX/SOFTX_2020_119",
-	"content": "Python/Octave wrapper generation for LALSuite"
+	"github/rohinkumar/correlcalc": {
+	"id": "github/rohinkumar/correlcalc",
+	"title": "github/rohinkumar/correlcalc",
+	"url": " https://rseng.github.io/software/repository/github/rohinkumar/correlcalc",
+	"content": "A Python package to calculate 2-point correlation function from galaxy redshift surveys for any generic model of Cosmology or geometry"
 	},
-	"github/Dfam-consortium/RepeatModeler": {
-	"id": "github/Dfam-consortium/RepeatModeler",
-	"title": "github/Dfam-consortium/RepeatModeler",
-	"url": " https://rseng.github.io/software/repository/github/Dfam-consortium/RepeatModeler",
-	"content": "De-Novo Repeat Discovery Tool"
+	"github/nbisweden/MrBayes": {
+	"id": "github/nbisweden/MrBayes",
+	"title": "github/nbisweden/MrBayes",
+	"url": " https://rseng.github.io/software/repository/github/nbisweden/MrBayes",
+	"content": "MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:"
 	},
-	"github/SciLifeLab/TIDDIT": {
-	"id": "github/SciLifeLab/TIDDIT",
-	"title": "github/SciLifeLab/TIDDIT",
-	"url": " https://rseng.github.io/software/repository/github/SciLifeLab/TIDDIT",
-	"content": "TIDDIT - structural variant calling"
+	"github/blebon/directChillFoam": {
+	"id": "github/blebon/directChillFoam",
+	"title": "github/blebon/directChillFoam",
+	"url": " https://rseng.github.io/software/repository/github/blebon/directChillFoam",
+	"content": "OpenFOAM solver for direct chill casting"
 	},
-	"github/ahoward-cf/ppmap": {
-	"id": "github/ahoward-cf/ppmap",
-	"title": "github/ahoward-cf/ppmap",
-	"url": " https://rseng.github.io/software/repository/github/ahoward-cf/ppmap",
-	"content": "Code for column density mapping with extra dimensions (temperature and dust opacity index)."
+	"github/JanLeppert/GasChromatographySimulator.jl": {
+	"id": "github/JanLeppert/GasChromatographySimulator.jl",
+	"title": "github/JanLeppert/GasChromatographySimulator.jl",
+	"url": " https://rseng.github.io/software/repository/github/JanLeppert/GasChromatographySimulator.jl",
+	"content": "A package for the simulation of gas chromatography (GC)"
 	},
-	"github/AdrianA-T/cytomorph": {
-	"id": "github/AdrianA-T/cytomorph",
-	"title": "github/AdrianA-T/cytomorph",
-	"url": " https://rseng.github.io/software/repository/github/AdrianA-T/cytomorph",
-	"content": "Cytomorph is a open software based on the main general features of cytoneme-meditated gradient formation. This sfotware allows to upload different experimental data to study in silico the role of different biological parameters of this type of signaling. Cytomorph can also work as an in silico tester for other biological hypotheses that are difficult to validate experimentally. In addition, the software architecture is designed in different modules that make Cytomorph an adaptive computational tool in which new advances can be integrated."
+	"github/SMI/SmiServices": {
+	"id": "github/SMI/SmiServices",
+	"title": "github/SMI/SmiServices",
+	"url": " https://rseng.github.io/software/repository/github/SMI/SmiServices",
+	"content": "Scale-able loading, linking and anonymisation of DICOM images for healthcare research environments (e.g. Safe Havens)"
 	},
-	"github/pyroll-project/pyroll-core": {
-	"id": "github/pyroll-project/pyroll-core",
-	"title": "github/pyroll-project/pyroll-core",
-	"url": " https://rseng.github.io/software/repository/github/pyroll-project/pyroll-core",
-	"content": "PyRoll rolling simulation framework - core library."
+	"github/magnusmanske/snpomatic": {
+	"id": "github/magnusmanske/snpomatic",
+	"title": "github/magnusmanske/snpomatic",
+	"url": " https://rseng.github.io/software/repository/github/magnusmanske/snpomatic",
+	"content": "fast, stringent short-read mapping software"
 	},
-	"github/BioGenies/AMPBenchmark": {
-	"id": "github/BioGenies/AMPBenchmark",
-	"title": "github/BioGenies/AMPBenchmark",
-	"url": " https://rseng.github.io/software/repository/github/BioGenies/AMPBenchmark",
+	"github/ArneTillmann/AuDoLab": {
+	"id": "github/ArneTillmann/AuDoLab",
+	"title": "github/ArneTillmann/AuDoLab",
+	"url": " https://rseng.github.io/software/repository/github/ArneTillmann/AuDoLab",
 	"content": "None"
 	},
-	"github/lukaswenzl/Magnification_bias_estimation_in_galaxy_surveys": {
-	"id": "github/lukaswenzl/Magnification_bias_estimation_in_galaxy_surveys",
-	"title": "github/lukaswenzl/Magnification_bias_estimation_in_galaxy_surveys",
-	"url": " https://rseng.github.io/software/repository/github/lukaswenzl/Magnification_bias_estimation_in_galaxy_surveys",
-	"content": "Code underlying the paper Wenzl, Chen, Bean 2023 https://arxiv.org/abs/2308.05892"
+	"github/kathlandgren/SWAMPE": {
+	"id": "github/kathlandgren/SWAMPE",
+	"title": "github/kathlandgren/SWAMPE",
+	"url": " https://rseng.github.io/software/repository/github/kathlandgren/SWAMPE",
+	"content": "2D spectral-core shallow-water exoplanet atmosphere model"
 	},
-	"github/arumugamlab/msamtools": {
-	"id": "github/arumugamlab/msamtools",
-	"title": "github/arumugamlab/msamtools",
-	"url": " https://rseng.github.io/software/repository/github/arumugamlab/msamtools",
-	"content": "Metagenomics-related extended functionalities to samtools"
+	"github/ChileanVirtualObservatory/indexing_utfsm": {
+	"id": "github/ChileanVirtualObservatory/indexing_utfsm",
+	"title": "github/ChileanVirtualObservatory/indexing_utfsm",
+	"url": " https://rseng.github.io/software/repository/github/ChileanVirtualObservatory/indexing_utfsm",
+	"content": "R implementation of RoiSE algorithm"
 	},
-	"github/saltastro/pyhrs": {
-	"id": "github/saltastro/pyhrs",
-	"title": "github/saltastro/pyhrs",
-	"url": " https://rseng.github.io/software/repository/github/saltastro/pyhrs",
-	"content": "Software for reducing observations from the SALT High Resolution Spectrograph"
+	"github/peterjc/galaxy_blast": {
+	"id": "github/peterjc/galaxy_blast",
+	"title": "github/peterjc/galaxy_blast",
+	"url": " https://rseng.github.io/software/repository/github/peterjc/galaxy_blast",
+	"content": "Galaxy wrappers for NCBI BLAST+ and related BLAST tools."
 	},
-	"github/xragua/xraybinaryorbit": {
-	"id": "github/xragua/xraybinaryorbit",
-	"title": "github/xragua/xraybinaryorbit",
-	"url": " https://rseng.github.io/software/repository/github/xragua/xraybinaryorbit",
-	"content": " A Python Package for Analyzing Orbital Modulations in X-ray Binaries"
+	"github/hsinnan75/MapCaller": {
+	"id": "github/hsinnan75/MapCaller",
+	"title": "github/hsinnan75/MapCaller",
+	"url": " https://rseng.github.io/software/repository/github/hsinnan75/MapCaller",
+	"content": "MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes"
 	},
-	"github/cosmodesi/pycorr": {
-	"id": "github/cosmodesi/pycorr",
-	"title": "github/cosmodesi/pycorr",
-	"url": " https://rseng.github.io/software/repository/github/cosmodesi/pycorr",
-	"content": "2-pt correlation function estimation"
+	"github/hsinnan75/GSAlign": {
+	"id": "github/hsinnan75/GSAlign",
+	"title": "github/hsinnan75/GSAlign",
+	"url": " https://rseng.github.io/software/repository/github/hsinnan75/GSAlign",
+	"content": "GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison"
 	},
-	"github/dansarie/sboxgates": {
-	"id": "github/dansarie/sboxgates",
-	"title": "github/dansarie/sboxgates",
-	"url": " https://rseng.github.io/software/repository/github/dansarie/sboxgates",
-	"content": "Program for finding low gate count implementations of S-boxes."
+	"github/macrocosme/time_domain_astronomy_sandbox": {
+	"id": "github/macrocosme/time_domain_astronomy_sandbox",
+	"title": "github/macrocosme/time_domain_astronomy_sandbox",
+	"url": " https://rseng.github.io/software/repository/github/macrocosme/time_domain_astronomy_sandbox",
+	"content": "None"
 	},
-	"github/mdtanker/polartoolkit": {
-	"id": "github/mdtanker/polartoolkit",
-	"title": "github/mdtanker/polartoolkit",
-	"url": " https://rseng.github.io/software/repository/github/mdtanker/polartoolkit",
-	"content": "Helpful tools for polar researchers"
+	"github/macrocosme/amber_meta": {
+	"id": "github/macrocosme/amber_meta",
+	"title": "github/macrocosme/amber_meta",
+	"url": " https://rseng.github.io/software/repository/github/macrocosme/amber_meta",
+	"content": "Routines to launch amber in a meta manner"
 	},
-	"github/parsotat/batanalysis": {
-	"id": "github/parsotat/batanalysis",
-	"title": "github/parsotat/batanalysis",
-	"url": " https://rseng.github.io/software/repository/github/parsotat/batanalysis",
-	"content": "A python HEASOFT wrapper for processing Swift-BAT data."
+	"github/duetosymmetry/qnm": {
+	"id": "github/duetosymmetry/qnm",
+	"title": "github/duetosymmetry/qnm",
+	"url": " https://rseng.github.io/software/repository/github/duetosymmetry/qnm",
+	"content": "Python package for computing Kerr quasinormal mode frequencies, separation constants, and spherical-spheroidal mixing coefficients"
 	},
-	"github/ldliao/jointVIP": {
-	"id": "github/ldliao/jointVIP",
-	"title": "github/ldliao/jointVIP",
-	"url": " https://rseng.github.io/software/repository/github/ldliao/jointVIP",
-	"content": "Prioritize variables in observational study design through the joint variable importance plot; shiny app: https://ldliao.shinyapps.io/jointVIP/"
+	"github/ckarako/RRATtrap": {
+	"id": "github/ckarako/RRATtrap",
+	"title": "github/ckarako/RRATtrap",
+	"url": " https://rseng.github.io/software/repository/github/ckarako/RRATtrap",
+	"content": "A single-pulse sifting algorithm to identify RRATs and transients using output from Scott Ransom&#39;s PRESTO single_pulse_search.py . Code described and applied in Karako-Argaman et al. 2015: http://adsabs.harvard.edu/abs/2015ApJ...809...67K"
 	},
-	"github/coleygroup/pyscreener": {
-	"id": "github/coleygroup/pyscreener",
-	"title": "github/coleygroup/pyscreener",
-	"url": " https://rseng.github.io/software/repository/github/coleygroup/pyscreener",
-	"content": "pythonic interface to virtual screening software"
+	"github/rodoulak/Desalination-and-Brine-Treatment-Simulation-": {
+	"id": "github/rodoulak/Desalination-and-Brine-Treatment-Simulation-",
+	"title": "github/rodoulak/Desalination-and-Brine-Treatment-Simulation-",
+	"url": " https://rseng.github.io/software/repository/github/rodoulak/Desalination-and-Brine-Treatment-Simulation-",
+	"content": "Techno-economic models for desalination and brine treatment technologies"
 	},
-	"github/SihaoCheng/WD_models": {
-	"id": "github/SihaoCheng/WD_models",
-	"title": "github/SihaoCheng/WD_models",
-	"url": " https://rseng.github.io/software/repository/github/SihaoCheng/WD_models",
-	"content": "I provide a python package for transformations between WD photometry (Gaia, SDSS, WISE, and many more) and physical parameters, based on interpolation of existing atmosphere grid and cooling models. If you use this tool, please cite this website and the corresponding papers of atmosphere grid (synthetic colors) and cooling models. "
+	"github/tseemann/VelvetOptimiser": {
+	"id": "github/tseemann/VelvetOptimiser",
+	"title": "github/tseemann/VelvetOptimiser",
+	"url": " https://rseng.github.io/software/repository/github/tseemann/VelvetOptimiser",
+	"content": ":chart_with_upwards_trend: Automatically optimise three of Velvet&#39;s assembly parameters."
 	},
-	"github/DReichLab/EIG": {
-	"id": "github/DReichLab/EIG",
-	"title": "github/DReichLab/EIG",
-	"url": " https://rseng.github.io/software/repository/github/DReichLab/EIG",
-	"content": "The EIGENSOFT package combines functionality from our population genetics methods (Patterson et al. 2006) and our EIGENSTRAT stratification correction method (Price et al. 2006)."
+	"github/tseemann/samclip": {
+	"id": "github/tseemann/samclip",
+	"title": "github/tseemann/samclip",
+	"url": " https://rseng.github.io/software/repository/github/tseemann/samclip",
+	"content": "Filter SAM file for soft and hard clipped alignments"
 	},
-	"github/LSSTDESC/sacc": {
-	"id": "github/LSSTDESC/sacc",
-	"title": "github/LSSTDESC/sacc",
-	"url": " https://rseng.github.io/software/repository/github/LSSTDESC/sacc",
-	"content": "Save All Correlations and Covariances"
+	"github/tseemann/snp-dists": {
+	"id": "github/tseemann/snp-dists",
+	"title": "github/tseemann/snp-dists",
+	"url": " https://rseng.github.io/software/repository/github/tseemann/snp-dists",
+	"content": "Pairwise SNP distance matrix from a FASTA sequence alignment"
 	},
-	"github/LSSTDESC/CCL": {
-	"id": "github/LSSTDESC/CCL",
-	"title": "github/LSSTDESC/CCL",
-	"url": " https://rseng.github.io/software/repository/github/LSSTDESC/CCL",
-	"content": "DESC Core Cosmology Library: cosmology routines with validated numerical accuracy"
+	"github/tseemann/snippy": {
+	"id": "github/tseemann/snippy",
+	"title": "github/tseemann/snippy",
+	"url": " https://rseng.github.io/software/repository/github/tseemann/snippy",
+	"content": ":scissors: :zap: Rapid haploid variant calling and core genome alignment"
 	},
-	"github/LSSTDESC/descqa": {
-	"id": "github/LSSTDESC/descqa",
-	"title": "github/LSSTDESC/descqa",
-	"url": " https://rseng.github.io/software/repository/github/LSSTDESC/descqa",
-	"content": "A validation framework and tests for mock galaxy catalogs and beyond"
+	"github/tseemann/prokka": {
+	"id": "github/tseemann/prokka",
+	"title": "github/tseemann/prokka",
+	"url": " https://rseng.github.io/software/repository/github/tseemann/prokka",
+	"content": ":zap: :aquarius: Rapid prokaryotic genome annotation"
 	},
-	"github/LSSTDESC/Spectractor": {
-	"id": "github/LSSTDESC/Spectractor",
-	"title": "github/LSSTDESC/Spectractor",
-	"url": " https://rseng.github.io/software/repository/github/LSSTDESC/Spectractor",
-	"content": "Spectractor aims at measuring the atmospheric transmission from slitless spectrophotometry images."
+	"github/tseemann/shovill": {
+	"id": "github/tseemann/shovill",
+	"title": "github/tseemann/shovill",
+	"url": " https://rseng.github.io/software/repository/github/tseemann/shovill",
+	"content": "⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads"
 	},
-	"github/LSSTDESC/snmachine": {
-	"id": "github/LSSTDESC/snmachine",
-	"title": "github/LSSTDESC/snmachine",
-	"url": " https://rseng.github.io/software/repository/github/LSSTDESC/snmachine",
-	"content": "Machine learning code for photometric supernova classification"
+	"github/tseemann/mlst": {
+	"id": "github/tseemann/mlst",
+	"title": "github/tseemann/mlst",
+	"url": " https://rseng.github.io/software/repository/github/tseemann/mlst",
+	"content": ":id: Scan contig files against PubMLST typing schemes"
 	},
-	"github/LSSTDESC/WeakLensingDeblending": {
-	"id": "github/LSSTDESC/WeakLensingDeblending",
-	"title": "github/LSSTDESC/WeakLensingDeblending",
-	"url": " https://rseng.github.io/software/repository/github/LSSTDESC/WeakLensingDeblending",
-	"content": "Weak lensing fast simulations and analysis of blended objects."
+	"github/tseemann/abricate": {
+	"id": "github/tseemann/abricate",
+	"title": "github/tseemann/abricate",
+	"url": " https://rseng.github.io/software/repository/github/tseemann/abricate",
+	"content": ":mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes"
 	},
-	"github/LSSTDESC/NaMaster": {
-	"id": "github/LSSTDESC/NaMaster",
-	"title": "github/LSSTDESC/NaMaster",
-	"url": " https://rseng.github.io/software/repository/github/LSSTDESC/NaMaster",
-	"content": "A unified pseudo-Cl framework"
+	"github/tseemann/barrnap": {
+	"id": "github/tseemann/barrnap",
+	"title": "github/tseemann/barrnap",
+	"url": " https://rseng.github.io/software/repository/github/tseemann/barrnap",
+	"content": ":microscope: :leo: Bacterial ribosomal RNA predictor"
 	},
-	"github/LSSTDESC/BlendingToolKit": {
-	"id": "github/LSSTDESC/BlendingToolKit",
-	"title": "github/LSSTDESC/BlendingToolKit",
-	"url": " https://rseng.github.io/software/repository/github/LSSTDESC/BlendingToolKit",
-	"content": "Tools to create blend catalogs, produce training samples and implement blending metrics"
+	"github/optuna/optuna": {
+	"id": "github/optuna/optuna",
+	"title": "github/optuna/optuna",
+	"url": " https://rseng.github.io/software/repository/github/optuna/optuna",
+	"content": "A hyperparameter optimization framework"
 	},
-	"github/LSSTDESC/chroma": {
-	"id": "github/LSSTDESC/chroma",
-	"title": "github/LSSTDESC/chroma",
-	"url": " https://rseng.github.io/software/repository/github/LSSTDESC/chroma",
-	"content": "Investigations of chromatic effects for LSST weak lensing, as documented here: https://LSSTDESC.github.io/chroma/ and here:"
+	"github/JulioHC00/PEPITA": {
+	"id": "github/JulioHC00/PEPITA",
+	"title": "github/JulioHC00/PEPITA",
+	"url": " https://rseng.github.io/software/repository/github/JulioHC00/PEPITA",
+	"content": "Prediction of Exoplanet Precisions using Information in Transit Analysis"
 	},
-	"github/leprojetcastor/castor": {
-	"id": "github/leprojetcastor/castor",
-	"title": "github/leprojetcastor/castor",
-	"url": " https://rseng.github.io/software/repository/github/leprojetcastor/castor",
-	"content": "None"
+	"github/humanfactors/FIPS": {
+	"id": "github/humanfactors/FIPS",
+	"title": "github/humanfactors/FIPS",
+	"url": " https://rseng.github.io/software/repository/github/humanfactors/FIPS",
+	"content": "The Fatigue Impairment Prediction Suite (for R)"
 	},
-	"github/Kushaalkumar-pothula/FLARE": {
-	"id": "github/Kushaalkumar-pothula/FLARE",
-	"title": "github/Kushaalkumar-pothula/FLARE",
-	"url": " https://rseng.github.io/software/repository/github/Kushaalkumar-pothula/FLARE",
-	"content": "Generates a synthetic Fast Radio Burst catalog, using the Monte Carlo technique."
+	"github/spedas/pyspedas": {
+	"id": "github/spedas/pyspedas",
+	"title": "github/spedas/pyspedas",
+	"url": " https://rseng.github.io/software/repository/github/spedas/pyspedas",
+	"content": "Python-based Space Physics Environment Data Analysis Software"
 	},
-	"github/dolaver/calsagos": {
-	"id": "github/dolaver/calsagos",
-	"title": "github/dolaver/calsagos",
-	"url": " https://rseng.github.io/software/repository/github/dolaver/calsagos",
-	"content": "Config files for my GitHub profile."
+	"github/secimTools/SECIMTools": {
+	"id": "github/secimTools/SECIMTools",
+	"title": "github/secimTools/SECIMTools",
+	"url": " https://rseng.github.io/software/repository/github/secimTools/SECIMTools",
+	"content": "A set of metabolomics tools for use in Galaxy"
 	},
-	"github/FastMLC/fMLC": {
-	"id": "github/FastMLC/fMLC",
-	"title": "github/FastMLC/fMLC",
-	"url": " https://rseng.github.io/software/repository/github/FastMLC/fMLC",
-	"content": "None"
+	"github/labsquare/CutePeaks": {
+	"id": "github/labsquare/CutePeaks",
+	"title": "github/labsquare/CutePeaks",
+	"url": " https://rseng.github.io/software/repository/github/labsquare/CutePeaks",
+	"content": "CutePeaks is a standalone Sanger trace viewer steered by a modern and user-friendly UI."
 	},
-	"github/TransDecoder/wiki": {
-	"id": "github/TransDecoder/wiki",
-	"title": "github/TransDecoder/wiki",
-	"url": " https://rseng.github.io/software/repository/github/TransDecoder/wiki",
-	"content": "identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks."
+	"github/annayqho/TheCannon": {
+	"id": "github/annayqho/TheCannon",
+	"title": "github/annayqho/TheCannon",
+	"url": " https://rseng.github.io/software/repository/github/annayqho/TheCannon",
+	"content": "a data-driven method for determining stellar parameters and abundances from stellar spectra"
 	},
-	"github/cameron314/concurrentqueue": {
-	"id": "github/cameron314/concurrentqueue",
-	"title": "github/cameron314/concurrentqueue",
-	"url": " https://rseng.github.io/software/repository/github/cameron314/concurrentqueue",
-	"content": "A fast multi-producer, multi-consumer lock-free concurrent queue for C++11"
+	"github/chakrah/sage": {
+	"id": "github/chakrah/sage",
+	"title": "github/chakrah/sage",
+	"url": " https://rseng.github.io/software/repository/github/chakrah/sage",
+	"content": "This code creates the stellar activity grid for exoplanets"
 	},
-	"github/ericagol/TTVFaster": {
-	"id": "github/ericagol/TTVFaster",
-	"title": "github/ericagol/TTVFaster",
-	"url": " https://rseng.github.io/software/repository/github/ericagol/TTVFaster",
-	"content": "First order eccentricity transit timing variations computed in Agol &amp; Deck (2015)"
+	"github/hemanthpruthvi/PyAstroPol": {
+	"id": "github/hemanthpruthvi/PyAstroPol",
+	"title": "github/hemanthpruthvi/PyAstroPol",
+	"url": " https://rseng.github.io/software/repository/github/hemanthpruthvi/PyAstroPol",
+	"content": "Instrumental Polarization Analysis of Astronomical Optics"
 	},
-	"github/ebellm/pyraf-dbsp": {
-	"id": "github/ebellm/pyraf-dbsp",
-	"title": "github/ebellm/pyraf-dbsp",
-	"url": " https://rseng.github.io/software/repository/github/ebellm/pyraf-dbsp",
-	"content": " :telescope: A PyRAF-based reduction pipeline for spectra taken with the Palomar 200-inch Double Spectrograph."
+	"github/PaulSt/NGSTrefftz": {
+	"id": "github/PaulSt/NGSTrefftz",
+	"title": "github/PaulSt/NGSTrefftz",
+	"url": " https://rseng.github.io/software/repository/github/PaulSt/NGSTrefftz",
+	"content": "Add-On to NGSolve for Trefftz methods"
 	},
-	"github/mfruzan/HaploMaker": {
-	"id": "github/mfruzan/HaploMaker",
-	"title": "github/mfruzan/HaploMaker",
-	"url": " https://rseng.github.io/software/repository/github/mfruzan/HaploMaker",
-	"content": "None"
+	"github/theLongLab/CATE": {
+	"id": "github/theLongLab/CATE",
+	"title": "github/theLongLab/CATE",
+	"url": " https://rseng.github.io/software/repository/github/theLongLab/CATE",
+	"content": "A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests on large scale genomic data."
 	},
-	"github/LiberTEM/LiberTEM": {
-	"id": "github/LiberTEM/LiberTEM",
-	"title": "github/LiberTEM/LiberTEM",
-	"url": " https://rseng.github.io/software/repository/github/LiberTEM/LiberTEM",
-	"content": "Open pixelated STEM framework"
+	"github/vidarsko/ComFiT": {
+	"id": "github/vidarsko/ComFiT",
+	"title": "github/vidarsko/ComFiT",
+	"url": " https://rseng.github.io/software/repository/github/vidarsko/ComFiT",
+	"content": "A python library for simulating field theories with topological defects"
 	},
-	"github/stegmaja/TSE": {
-	"id": "github/stegmaja/TSE",
-	"title": "github/stegmaja/TSE",
-	"url": " https://rseng.github.io/software/repository/github/stegmaja/TSE",
-	"content": "Triple stellar evolution code"
+	"github/akdeniz-uzay/A-Track": {
+	"id": "github/akdeniz-uzay/A-Track",
+	"title": "github/akdeniz-uzay/A-Track",
+	"url": " https://rseng.github.io/software/repository/github/akdeniz-uzay/A-Track",
+	"content": "A-Track: Detecting Moving Objects in FITS images."
 	},
-	"github/will-rowe/groot": {
-	"id": "github/will-rowe/groot",
-	"title": "github/will-rowe/groot",
-	"url": " https://rseng.github.io/software/repository/github/will-rowe/groot",
-	"content": "A resistome profiler for Graphing Resistance Out Of meTagenomes"
+	"github/abonaldi/TRECS": {
+	"id": "github/abonaldi/TRECS",
+	"title": "github/abonaldi/TRECS",
+	"url": " https://rseng.github.io/software/repository/github/abonaldi/TRECS",
+	"content": "This repository contains the code used to produce the Tiered Radio Extragalactic Continuum Simulation (T-RECS, Bonaldi et al. 2018)"
 	},
-	"github/will-rowe/hulk": {
-	"id": "github/will-rowe/hulk",
-	"title": "github/will-rowe/hulk",
-	"url": " https://rseng.github.io/software/repository/github/will-rowe/hulk",
-	"content": "Histosketching Using Little Kmers"
+	"github/mbonav/Exo_DMC": {
+	"id": "github/mbonav/Exo_DMC",
+	"title": "github/mbonav/Exo_DMC",
+	"url": " https://rseng.github.io/software/repository/github/mbonav/Exo_DMC",
+	"content": "Exoplanet Detection Map Calculator "
 	},
-	"github/PeterKamphuis/FAT": {
-	"id": "github/PeterKamphuis/FAT",
-	"title": "github/PeterKamphuis/FAT",
-	"url": " https://rseng.github.io/software/repository/github/PeterKamphuis/FAT",
-	"content": "An IDL/GDL wrapper to automate TiRiFiC"
+	"github/phirling/pyc2ray": {
+	"id": "github/phirling/pyc2ray",
+	"title": "github/phirling/pyc2ray",
+	"url": " https://rseng.github.io/software/repository/github/phirling/pyc2ray",
+	"content": "Python interface to C2Ray, with GPU-acceleration"
 	},
-	"github/PeterKamphuis/pyFAT-astro": {
-	"id": "github/PeterKamphuis/pyFAT-astro",
-	"title": "github/PeterKamphuis/pyFAT-astro",
-	"url": " https://rseng.github.io/software/repository/github/PeterKamphuis/pyFAT-astro",
-	"content": "Python3 version of FAT. Extensive documentation can be found at https://pyfat-astro.readthedocs.io/en/latest/"
+	"github/gerddie/maxflow": {
+	"id": "github/gerddie/maxflow",
+	"title": "github/gerddie/maxflow",
+	"url": " https://rseng.github.io/software/repository/github/gerddie/maxflow",
+	"content": "A library that implements the maxflow-mincut algorithm. "
 	},
-	"github/HKU-BAL/Clair3": {
-	"id": "github/HKU-BAL/Clair3",
-	"title": "github/HKU-BAL/Clair3",
-	"url": " https://rseng.github.io/software/repository/github/HKU-BAL/Clair3",
-	"content": "Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling"
+	"github/ghislainv/forestatrisk": {
+	"id": "github/ghislainv/forestatrisk",
+	"title": "github/ghislainv/forestatrisk",
+	"url": " https://rseng.github.io/software/repository/github/ghislainv/forestatrisk",
+	"content": ":package: :snake: Python package to model and forecast the risk of deforestation"
 	},
-	"github/PynPoint/PynPoint": {
-	"id": "github/PynPoint/PynPoint",
-	"title": "github/PynPoint/PynPoint",
-	"url": " https://rseng.github.io/software/repository/github/PynPoint/PynPoint",
-	"content": "Pipeline for processing and analysis of high-contrast imaging data"
+	"github/swagnercarena/paltas": {
+	"id": "github/swagnercarena/paltas",
+	"title": "github/swagnercarena/paltas",
+	"url": " https://rseng.github.io/software/repository/github/swagnercarena/paltas",
+	"content": "Conduct simulation-based inference on strong gravitational lensing systems."
 	},
-	"github/s-will/LocARNA": {
-	"id": "github/s-will/LocARNA",
-	"title": "github/s-will/LocARNA",
-	"url": " https://rseng.github.io/software/repository/github/s-will/LocARNA",
-	"content": "Alignment of RNAs"
+	"github/swagnercarena/ovejero": {
+	"id": "github/swagnercarena/ovejero",
+	"title": "github/swagnercarena/ovejero",
+	"url": " https://rseng.github.io/software/repository/github/swagnercarena/ovejero",
+	"content": "Conducts hierarchical inference of strongly-lensed systems with Bayesian neural networks"
 	},
-	"github/arq5x/lumpy-sv": {
-	"id": "github/arq5x/lumpy-sv",
-	"title": "github/arq5x/lumpy-sv",
-	"url": " https://rseng.github.io/software/repository/github/arq5x/lumpy-sv",
-	"content": "lumpy: a general probabilistic framework for structural variant discovery"
+	"github/bcgov/shinyssdtools": {
+	"id": "github/bcgov/shinyssdtools",
+	"title": "github/bcgov/shinyssdtools",
+	"url": " https://rseng.github.io/software/repository/github/bcgov/shinyssdtools",
+	"content": "Shiny interface to ssdtools R package"
 	},
-	"github/arq5x/bedtools2": {
-	"id": "github/arq5x/bedtools2",
-	"title": "github/arq5x/bedtools2",
-	"url": " https://rseng.github.io/software/repository/github/arq5x/bedtools2",
-	"content": "bedtools - the swiss army knife for genome arithmetic"
+	"github/bcgov/bcdata": {
+	"id": "github/bcgov/bcdata",
+	"title": "github/bcgov/bcdata",
+	"url": " https://rseng.github.io/software/repository/github/bcgov/bcdata",
+	"content": "An R package for searching &amp; retrieving data from the B.C. Data Catalogue"
+	},
+	"github/uwsbel/low-fidelity-dynamic-models": {
+	"id": "github/uwsbel/low-fidelity-dynamic-models",
+	"title": "github/uwsbel/low-fidelity-dynamic-models",
+	"url": " https://rseng.github.io/software/repository/github/uwsbel/low-fidelity-dynamic-models",
+	"content": "A library of fast and accurate low fidelity dynamic models for applications in robotics"
+	},
+	"github/MIT-STARLab/deconfuser": {
+	"id": "github/MIT-STARLab/deconfuser",
+	"title": "github/MIT-STARLab/deconfuser",
+	"url": " https://rseng.github.io/software/repository/github/MIT-STARLab/deconfuser",
+	"content": "Fast orbit fitting to directly imaged multi-planetary systems"
 	},
-	"github/arq5x/poretools": {
-	"id": "github/arq5x/poretools",
-	"title": "github/arq5x/poretools",
-	"url": " https://rseng.github.io/software/repository/github/arq5x/poretools",
-	"content": "a toolkit for working with Oxford nanopore data"
+	"github/myrafproject/myrafproject": {
+	"id": "github/myrafproject/myrafproject",
+	"title": "github/myrafproject/myrafproject",
+	"url": " https://rseng.github.io/software/repository/github/myrafproject/myrafproject",
+	"content": "An Easy GUI for IRAF Photometry: MYRaf Project 3.0! "
 	},
-	"github/arq5x/grabix": {
-	"id": "github/arq5x/grabix",
-	"title": "github/arq5x/grabix",
-	"url": " https://rseng.github.io/software/repository/github/arq5x/grabix",
-	"content": " a wee tool for random access into BGZF files."
+	"github/ctkelley/MultiPrecisionArrays.jl": {
+	"id": "github/ctkelley/MultiPrecisionArrays.jl",
+	"title": "github/ctkelley/MultiPrecisionArrays.jl",
+	"url": " https://rseng.github.io/software/repository/github/ctkelley/MultiPrecisionArrays.jl",
+	"content": "Mulitprecision Arrays"
 	},
-	"github/RudolfCardinal/camcops": {
-	"id": "github/RudolfCardinal/camcops",
-	"title": "github/RudolfCardinal/camcops",
-	"url": " https://rseng.github.io/software/repository/github/RudolfCardinal/camcops",
-	"content": "Cambridge Cognitive and Psychiatric Test Kit (CamCOPS)"
+	"github/leapigufpb/FuzzyClass": {
+	"id": "github/leapigufpb/FuzzyClass",
+	"title": "github/leapigufpb/FuzzyClass",
+	"url": " https://rseng.github.io/software/repository/github/leapigufpb/FuzzyClass",
+	"content": "None"
 	},
-	"github/PennyLaneAI/catalyst": {
-	"id": "github/PennyLaneAI/catalyst",
-	"title": "github/PennyLaneAI/catalyst",
-	"url": " https://rseng.github.io/software/repository/github/PennyLaneAI/catalyst",
-	"content": "A JIT compiler for hybrid quantum programs in PennyLane"
+	"github/Varnani/pywd2015-qt5": {
+	"id": "github/Varnani/pywd2015-qt5",
+	"title": "github/Varnani/pywd2015-qt5",
+	"url": " https://rseng.github.io/software/repository/github/Varnani/pywd2015-qt5",
+	"content": "A Qt5 GUI written in Python for Wilson - Devinney eclipsing binary modeling software."
 	},
-	"github/PyLops/pylops-mpi": {
-	"id": "github/PyLops/pylops-mpi",
-	"title": "github/PyLops/pylops-mpi",
-	"url": " https://rseng.github.io/software/repository/github/PyLops/pylops-mpi",
-	"content": "MPI-powered PyLops with MPI4Py"
+	"github/tumcms/Open-Infra-Platform": {
+	"id": "github/tumcms/Open-Infra-Platform",
+	"title": "github/tumcms/Open-Infra-Platform",
+	"url": " https://rseng.github.io/software/repository/github/tumcms/Open-Infra-Platform",
+	"content": "This is the official repository of the open-source Open Infra Platform software (as of April 2020)."
 	},
-	"github/shinichiroando/sashimi-w": {
-	"id": "github/shinichiroando/sashimi-w",
-	"title": "github/shinichiroando/sashimi-w",
-	"url": " https://rseng.github.io/software/repository/github/shinichiroando/sashimi-w",
-	"content": "None"
+	"github/jydu/physamp": {
+	"id": "github/jydu/physamp",
+	"title": "github/jydu/physamp",
+	"url": " https://rseng.github.io/software/repository/github/jydu/physamp",
+	"content": "Phylogenetic Sampling and Optimization of sequence alignments"
 	},
-	"github/shinichiroando/sashimi-c": {
-	"id": "github/shinichiroando/sashimi-c",
-	"title": "github/shinichiroando/sashimi-c",
-	"url": " https://rseng.github.io/software/repository/github/shinichiroando/sashimi-c",
-	"content": "None"
+	"github/jydu/maffilter": {
+	"id": "github/jydu/maffilter",
+	"title": "github/jydu/maffilter",
+	"url": " https://rseng.github.io/software/repository/github/jydu/maffilter",
+	"content": "The MafFilter genome alignment processor"
 	},
-	"github/beagle-dev/beagle-lib": {
-	"id": "github/beagle-dev/beagle-lib",
-	"title": "github/beagle-dev/beagle-lib",
-	"url": " https://rseng.github.io/software/repository/github/beagle-dev/beagle-lib",
-	"content": "general purpose library for evaluating the likelihood of sequence evolution on trees"
+	"github/tlancian/bio_cs": {
+	"id": "github/tlancian/bio_cs",
+	"title": "github/tlancian/bio_cs",
+	"url": " https://rseng.github.io/software/repository/github/tlancian/bio_cs",
+	"content": "&#34;Contrast Subgraphs Allow Comparing Homogeneous and Heterogeneous Networks Derived from Omics Data&#34; - T. Lanciano, A. Savino, F. Porcu, D. Cittaro, F. Bonchi, P. Provero"
 	},
-	"github/phylo42/EPIK": {
-	"id": "github/phylo42/EPIK",
-	"title": "github/phylo42/EPIK",
-	"url": " https://rseng.github.io/software/repository/github/phylo42/EPIK",
-	"content": "Alignment-free phylogenetic placement"
+	"github/CosmoStatGW/WF4Py": {
+	"id": "github/CosmoStatGW/WF4Py",
+	"title": "github/CosmoStatGW/WF4Py",
+	"url": " https://rseng.github.io/software/repository/github/CosmoStatGW/WF4Py",
+	"content": "Gravitational waves waveform models in pure Python language"
 	},
-	"github/phylo42/RAPPAS": {
-	"id": "github/phylo42/RAPPAS",
-	"title": "github/phylo42/RAPPAS",
-	"url": " https://rseng.github.io/software/repository/github/phylo42/RAPPAS",
-	"content": "Rapid, Alignment-free, Phylogenetic Placement  via Ancestral Sequences"
+	"github/CosmoStatGW/DarkSirensStat": {
+	"id": "github/CosmoStatGW/DarkSirensStat",
+	"title": "github/CosmoStatGW/DarkSirensStat",
+	"url": " https://rseng.github.io/software/repository/github/CosmoStatGW/DarkSirensStat",
+	"content": "Statistical method for measuring modified GW propagation and Hubble parameter with dark sirens and galaxy catalogues"
 	},
-	"github/nicolet5/DiffCapAnalyzer": {
-	"id": "github/nicolet5/DiffCapAnalyzer",
-	"title": "github/nicolet5/DiffCapAnalyzer",
-	"url": " https://rseng.github.io/software/repository/github/nicolet5/DiffCapAnalyzer",
-	"content": "A tool for quantitative analysis of differential capacity data! "
+	"github/CosmoStatGW/MGCosmoPop": {
+	"id": "github/CosmoStatGW/MGCosmoPop",
+	"title": "github/CosmoStatGW/MGCosmoPop",
+	"url": " https://rseng.github.io/software/repository/github/CosmoStatGW/MGCosmoPop",
+	"content": "Modified Gravity and Cosmology with Binary Black Holes&#39; Population models : hierarchical bayesian method for constraining modified GW propagation and BBH population models with GWs."
 	},
-	"github/aymgal/COOLEST": {
-	"id": "github/aymgal/COOLEST",
-	"title": "github/aymgal/COOLEST",
-	"url": " https://rseng.github.io/software/repository/github/aymgal/COOLEST",
-	"content": "Standard for strong gravitational lensing studies"
+	"github/CosmoStatGW/gwfast": {
+	"id": "github/CosmoStatGW/gwfast",
+	"title": "github/CosmoStatGW/gwfast",
+	"url": " https://rseng.github.io/software/repository/github/CosmoStatGW/gwfast",
+	"content": "A Fisher information matrix python package for GW detector networks."
 	},
-	"github/mecobpsu/bacseq": {
-	"id": "github/mecobpsu/bacseq",
-	"title": "github/mecobpsu/bacseq",
-	"url": " https://rseng.github.io/software/repository/github/mecobpsu/bacseq",
-	"content": "None"
+	"github/jalombar/starsmasher": {
+	"id": "github/jalombar/starsmasher",
+	"title": "github/jalombar/starsmasher",
+	"url": " https://rseng.github.io/software/repository/github/jalombar/starsmasher",
+	"content": "A Smoothed Particle Hydrodynamics code for smashing stars (and planets)"
 	},
-	"github/bolverk/huji-rich": {
-	"id": "github/bolverk/huji-rich",
-	"title": "github/bolverk/huji-rich",
-	"url": " https://rseng.github.io/software/repository/github/bolverk/huji-rich",
-	"content": "A hydrodynamic simulation on a moving mesh"
+	"github/JoelForamitti/agentpy": {
+	"id": "github/JoelForamitti/agentpy",
+	"title": "github/JoelForamitti/agentpy",
+	"url": " https://rseng.github.io/software/repository/github/JoelForamitti/agentpy",
+	"content": "AgentPy is an open-source framework for the development and analysis of agent-based models in Python."
 	},
-	"github/TeraTrees/TIPP": {
-	"id": "github/TeraTrees/TIPP",
-	"title": "github/TeraTrees/TIPP",
-	"url": " https://rseng.github.io/software/repository/github/TeraTrees/TIPP",
-	"content": "tool for Taxonomic Identification and Phylogenetic Profiling"
+	"github/Eventdisplay/Eventdisplay": {
+	"id": "github/Eventdisplay/Eventdisplay",
+	"title": "github/Eventdisplay/Eventdisplay",
+	"url": " https://rseng.github.io/software/repository/github/Eventdisplay/Eventdisplay",
+	"content": "A reconstruction and analysis pipeline for ground-based imaging atmospheric Cherenkov Telescopes"
 	},
-	"github/berenslab/MorphoPy": {
-	"id": "github/berenslab/MorphoPy",
-	"title": "github/berenslab/MorphoPy",
-	"url": " https://rseng.github.io/software/repository/github/berenslab/MorphoPy",
-	"content": "None"
+	"github/pyFFTW/pyFFTW": {
+	"id": "github/pyFFTW/pyFFTW",
+	"title": "github/pyFFTW/pyFFTW",
+	"url": " https://rseng.github.io/software/repository/github/pyFFTW/pyFFTW",
+	"content": "A pythonic python wrapper around FFTW"
 	},
-	"github/kennethcarrell/ATARRI": {
-	"id": "github/kennethcarrell/ATARRI",
-	"title": "github/kennethcarrell/ATARRI",
-	"url": " https://rseng.github.io/software/repository/github/kennethcarrell/ATARRI",
-	"content": "A TESS Archive RR Lyrae Classifier"
+	"github/FrancesBW/bellamy": {
+	"id": "github/FrancesBW/bellamy",
+	"title": "github/FrancesBW/bellamy",
+	"url": " https://rseng.github.io/software/repository/github/FrancesBW/bellamy",
+	"content": "None"
 	},
-	"github/kushaltirumala/WaldoInSky": {
-	"id": "github/kushaltirumala/WaldoInSky",
-	"title": "github/kushaltirumala/WaldoInSky",
-	"url": " https://rseng.github.io/software/repository/github/kushaltirumala/WaldoInSky",
-	"content": "Code Repository for `Where is Waldo (and his friends)? A comparison of anomaly detection algorithms for time-domain astronomy`"
+	"github/BASTAcode/BASTA": {
+	"id": "github/BASTAcode/BASTA",
+	"title": "github/BASTAcode/BASTA",
+	"url": " https://rseng.github.io/software/repository/github/BASTAcode/BASTA",
+	"content": "BASTA: The BAyesian STellar Algorithm"
 	},
-	"github/henrikdvn/CRSocket": {
-	"id": "github/henrikdvn/CRSocket",
-	"title": "github/henrikdvn/CRSocket",
-	"url": " https://rseng.github.io/software/repository/github/henrikdvn/CRSocket",
-	"content": "Controller-Responder Socket"
+	"github/BlueBrain/BlueCelluLab": {
+	"id": "github/BlueBrain/BlueCelluLab",
+	"title": "github/BlueBrain/BlueCelluLab",
+	"url": " https://rseng.github.io/software/repository/github/BlueBrain/BlueCelluLab",
+	"content": "Biologically detailed neural network simulations and analysis API"
 	},
-	"github/KennethEnevoldsen/augmenty": {
-	"id": "github/KennethEnevoldsen/augmenty",
-	"title": "github/KennethEnevoldsen/augmenty",
-	"url": " https://rseng.github.io/software/repository/github/KennethEnevoldsen/augmenty",
-	"content": "Augmenty is an augmentation library based on spaCy for augmenting texts."
+	"github/grahambell/pymoc": {
+	"id": "github/grahambell/pymoc",
+	"title": "github/grahambell/pymoc",
+	"url": " https://rseng.github.io/software/repository/github/grahambell/pymoc",
+	"content": "Multi-Order Coverage map module for Python"
 	},
-	"github/andreasmang/claire": {
-	"id": "github/andreasmang/claire",
-	"title": "github/andreasmang/claire",
-	"url": " https://rseng.github.io/software/repository/github/andreasmang/claire",
-	"content": "Constrained Large Deformation Diffeomorphic Image Registration (CLAIRE)"
+	"github/INCF/one_click": {
+	"id": "github/INCF/one_click",
+	"title": "github/INCF/one_click",
+	"url": " https://rseng.github.io/software/repository/github/INCF/one_click",
+	"content": "One Click Sharing"
 	},
-	"github/mad-lab-fau/imucal": {
-	"id": "github/mad-lab-fau/imucal",
-	"title": "github/mad-lab-fau/imucal",
-	"url": " https://rseng.github.io/software/repository/github/mad-lab-fau/imucal",
-	"content": "A Python library to calibrate 6 DOF IMUs"
+	"github/secastel/phaser": {
+	"id": "github/secastel/phaser",
+	"title": "github/secastel/phaser",
+	"url": " https://rseng.github.io/software/repository/github/secastel/phaser",
+	"content": "phasing and Allele Specific Expression from RNA-seq"
 	},
-	"github/mad-lab-fau/tpcp": {
-	"id": "github/mad-lab-fau/tpcp",
-	"title": "github/mad-lab-fau/tpcp",
-	"url": " https://rseng.github.io/software/repository/github/mad-lab-fau/tpcp",
-	"content": "Pipeline and Dataset helpers for complex algorithm evaluation."
+	"github/mcfrith/tandem-genotypes": {
+	"id": "github/mcfrith/tandem-genotypes",
+	"title": "github/mcfrith/tandem-genotypes",
+	"url": " https://rseng.github.io/software/repository/github/mcfrith/tandem-genotypes",
+	"content": "compare lengths of duplications in DNA sequences"
 	},
-	"github/bd-j/prospector": {
-	"id": "github/bd-j/prospector",
-	"title": "github/bd-j/prospector",
-	"url": " https://rseng.github.io/software/repository/github/bd-j/prospector",
-	"content": "Python code for Stellar Population Inference from Spectra and SEDs"
+	"github/mcfrith/dnarrange": {
+	"id": "github/mcfrith/dnarrange",
+	"title": "github/mcfrith/dnarrange",
+	"url": " https://rseng.github.io/software/repository/github/mcfrith/dnarrange",
+	"content": "Method to find rearrangements in long DNA reads relative to a genome seq"
 	},
-	"github/bd-j/sedpy": {
-	"id": "github/bd-j/sedpy",
-	"title": "github/bd-j/sedpy",
-	"url": " https://rseng.github.io/software/repository/github/bd-j/sedpy",
-	"content": "Utilities for astronomical spectral energy distributions"
+	"github/exobssim/rapoc-public": {
+	"id": "github/exobssim/rapoc-public",
+	"title": "github/exobssim/rapoc-public",
+	"url": " https://rseng.github.io/software/repository/github/exobssim/rapoc-public",
+	"content": "Rapoc uses molecular absorption measurements (i.e. wavelength-dependent opacities) to calculate Rosseland and Planck mean opacities that are commonly used in atmospheric modelling."
 	},
-	"github/bd-j/forcepho": {
-	"id": "github/bd-j/forcepho",
-	"title": "github/bd-j/forcepho",
-	"url": " https://rseng.github.io/software/repository/github/bd-j/forcepho",
-	"content": "Generative modeling galaxy photometry for JWST"
+	"github/enthought/mayavi": {
+	"id": "github/enthought/mayavi",
+	"title": "github/enthought/mayavi",
+	"url": " https://rseng.github.io/software/repository/github/enthought/mayavi",
+	"content": "3D visualization of scientific data in Python"
 	},
-	"github/martinjzhang/scDRS": {
-	"id": "github/martinjzhang/scDRS",
-	"title": "github/martinjzhang/scDRS",
-	"url": " https://rseng.github.io/software/repository/github/martinjzhang/scDRS",
-	"content": "Single-cell disease relevance score (scDRS)"
+	"github/enthought/vpsearch": {
+	"id": "github/enthought/vpsearch",
+	"title": "github/enthought/vpsearch",
+	"url": " https://rseng.github.io/software/repository/github/enthought/vpsearch",
+	"content": "Fast similarity search for genomic sequences via vantage-point trees"
 	},
-	"github/ABard0/MDGF-MCEC": {
-	"id": "github/ABard0/MDGF-MCEC",
-	"title": "github/ABard0/MDGF-MCEC",
-	"url": " https://rseng.github.io/software/repository/github/ABard0/MDGF-MCEC",
+	"github/kibokov/grumpy": {
+	"id": "github/kibokov/grumpy",
+	"title": "github/kibokov/grumpy",
+	"url": " https://rseng.github.io/software/repository/github/kibokov/grumpy",
 	"content": "None"
 	},
-	"github/fbreitwieser/krakenuniq": {
-	"id": "github/fbreitwieser/krakenuniq",
-	"title": "github/fbreitwieser/krakenuniq",
-	"url": " https://rseng.github.io/software/repository/github/fbreitwieser/krakenuniq",
-	"content": "🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results"
+	"github/hpc-maths/samurai": {
+	"id": "github/hpc-maths/samurai",
+	"title": "github/hpc-maths/samurai",
+	"url": " https://rseng.github.io/software/repository/github/hpc-maths/samurai",
+	"content": "Intervals coupled with algebra of set to handle adaptive mesh refinement and operators on it."
 	},
-	"github/cdw9bf/CompactGroup": {
-	"id": "github/cdw9bf/CompactGroup",
-	"title": "github/cdw9bf/CompactGroup",
-	"url": " https://rseng.github.io/software/repository/github/cdw9bf/CompactGroup",
-	"content": "Code to recreate the results of Wiens et al 2019 (https://authors.library.caltech.edu/93762/)"
+	"github/shirtsgroup/physical_validation": {
+	"id": "github/shirtsgroup/physical_validation",
+	"title": "github/shirtsgroup/physical_validation",
+	"url": " https://rseng.github.io/software/repository/github/shirtsgroup/physical_validation",
+	"content": "Physical validation of molecular simulations"
 	},
-	"github/spyder-ide/spyder": {
-	"id": "github/spyder-ide/spyder",
-	"title": "github/spyder-ide/spyder",
-	"url": " https://rseng.github.io/software/repository/github/spyder-ide/spyder",
-	"content": "Official repository for Spyder - The Scientific Python Development Environment"
+	"github/kateharborne/SimSpin": {
+	"id": "github/kateharborne/SimSpin",
+	"title": "github/kateharborne/SimSpin",
+	"url": " https://rseng.github.io/software/repository/github/kateharborne/SimSpin",
+	"content": "SimSpin - A package for the kinematic analysis of galaxy simulations"
 	},
-	"github/arhstevens/DarkSage": {
-	"id": "github/arhstevens/DarkSage",
-	"title": "github/arhstevens/DarkSage",
-	"url": " https://rseng.github.io/software/repository/github/arhstevens/DarkSage",
-	"content": "The Dark Sage semi-analytic model"
+	"github/JFFleming/RCFV_Reader": {
+	"id": "github/JFFleming/RCFV_Reader",
+	"title": "github/JFFleming/RCFV_Reader",
+	"url": " https://rseng.github.io/software/repository/github/JFFleming/RCFV_Reader",
+	"content": "RCFV reader is a new software to quickly calculate normalised relative compositional frequency variability."
 	},
-	"github/JLiangLab/TransVW": {
-	"id": "github/JLiangLab/TransVW",
-	"title": "github/JLiangLab/TransVW",
-	"url": " https://rseng.github.io/software/repository/github/JLiangLab/TransVW",
-	"content": "Official Keras &amp; PyTorch Implementation and Pre-trained Models for TransVW"
+	"github/pysal/spopt": {
+	"id": "github/pysal/spopt",
+	"title": "github/pysal/spopt",
+	"url": " https://rseng.github.io/software/repository/github/pysal/spopt",
+	"content": "Spatial Optimization"
 	},
-	"github/OrchardLANL/DPFEHM.jl": {
-	"id": "github/OrchardLANL/DPFEHM.jl",
-	"title": "github/OrchardLANL/DPFEHM.jl",
-	"url": " https://rseng.github.io/software/repository/github/OrchardLANL/DPFEHM.jl",
-	"content": "DPFEHM: A Differentiable Subsurface Flow Simulator"
+	"github/pysal/pysal": {
+	"id": "github/pysal/pysal",
+	"title": "github/pysal/pysal",
+	"url": " https://rseng.github.io/software/repository/github/pysal/pysal",
+	"content": "PySAL: Python Spatial Analysis Library Meta-Package"
 	},
-	"github/MichaelSel/edoJS": {
-	"id": "github/MichaelSel/edoJS",
-	"title": "github/MichaelSel/edoJS",
-	"url": " https://rseng.github.io/software/repository/github/MichaelSel/edoJS",
-	"content": "A set of functions for manipulating musical pitches within a given EDO"
+	"github/pysal/spaghetti": {
+	"id": "github/pysal/spaghetti",
+	"title": "github/pysal/spaghetti",
+	"url": " https://rseng.github.io/software/repository/github/pysal/spaghetti",
+	"content": "SPAtial GrapHs: nETworks, Topology, &amp; Inference"
 	},
-	"github/scikit-learn-contrib/hdbscan": {
-	"id": "github/scikit-learn-contrib/hdbscan",
-	"title": "github/scikit-learn-contrib/hdbscan",
-	"url": " https://rseng.github.io/software/repository/github/scikit-learn-contrib/hdbscan",
-	"content": "A high performance implementation of HDBSCAN clustering."
+	"github/dputhier/pygtftk": {
+	"id": "github/dputhier/pygtftk",
+	"title": "github/dputhier/pygtftk",
+	"url": " https://rseng.github.io/software/repository/github/dputhier/pygtftk",
+	"content": "A python package and a set of shell commands to handle GTF files"
 	},
-	"github/aroffringa/aartfaac2ms": {
-	"id": "github/aroffringa/aartfaac2ms",
-	"title": "github/aroffringa/aartfaac2ms",
-	"url": " https://rseng.github.io/software/repository/github/aroffringa/aartfaac2ms",
-	"content": "Converts Aartfaac correlator files to measurement sets"
+	"github/GabrielNakamura/FishPhyloMaker": {
+	"id": "github/GabrielNakamura/FishPhyloMaker",
+	"title": "github/GabrielNakamura/FishPhyloMaker",
+	"url": " https://rseng.github.io/software/repository/github/GabrielNakamura/FishPhyloMaker",
+	"content": "Making phylogenies for a list of fish species "
 	},
-	"github/MolMeDB/MolMeDB": {
-	"id": "github/MolMeDB/MolMeDB",
-	"title": "github/MolMeDB/MolMeDB",
-	"url": " https://rseng.github.io/software/repository/github/MolMeDB/MolMeDB",
-	"content": "MolMeDB is an open chemistry database about interactions of molecules with membranes."
+	"github/djbard/ccogs": {
+	"id": "github/djbard/ccogs",
+	"title": "github/djbard/ccogs",
+	"url": " https://rseng.github.io/software/repository/github/djbard/ccogs",
+	"content": "Cosmological Calculations on GPUS. A collection of code used to perform calculations use in Cosmology studies and written for GPUs. "
 	},
-	"github/nlesc-dirac/sagecal": {
-	"id": "github/nlesc-dirac/sagecal",
-	"title": "github/nlesc-dirac/sagecal",
-	"url": " https://rseng.github.io/software/repository/github/nlesc-dirac/sagecal",
-	"content": "SAGECal is a very fast, memory efficient and GPU accelerated radio interferometric calibration program. It supports all source models including points, Gaussians and Shapelets. Distributed calibration using MPI and consensus optimization is enabled. Tools to build/restore sky models are included."
+	"github/wjakethompson/measr": {
+	"id": "github/wjakethompson/measr",
+	"title": "github/wjakethompson/measr",
+	"url": " https://rseng.github.io/software/repository/github/wjakethompson/measr",
+	"content": "R package for the Bayesian estimation of diagnostic classification models using Stan"
 	},
-	"github/9505-PNNL/wmpy_power": {
-	"id": "github/9505-PNNL/wmpy_power",
-	"title": "github/9505-PNNL/wmpy_power",
-	"url": " https://rseng.github.io/software/repository/github/9505-PNNL/wmpy_power",
-	"content": " A hydropower simulation model"
+	"github/jhayer/baargin": {
+	"id": "github/jhayer/baargin",
+	"title": "github/jhayer/baargin",
+	"url": " https://rseng.github.io/software/repository/github/jhayer/baargin",
+	"content": "Bacterial Assembly and Antimicrobial Resistance Genes In NextFlow"
 	},
-	"github/hannorein/rebound": {
-	"id": "github/hannorein/rebound",
-	"title": "github/hannorein/rebound",
-	"url": " https://rseng.github.io/software/repository/github/hannorein/rebound",
-	"content": "💫 An open-source multi-purpose N-body code."
+	"github/GreenBankObservatory/gbtgridder": {
+	"id": "github/GreenBankObservatory/gbtgridder",
+	"title": "github/GreenBankObservatory/gbtgridder",
+	"url": " https://rseng.github.io/software/repository/github/GreenBankObservatory/gbtgridder",
+	"content": "A stand-alone spectral gridder and imager for the Green Bank Telescope"
 	},
-	"github/halomod/halomod": {
-	"id": "github/halomod/halomod",
-	"title": "github/halomod/halomod",
-	"url": " https://rseng.github.io/software/repository/github/halomod/halomod",
-	"content": "Python package for dealing with the Halo Model"
+	"github/MaceKuailv/seaduck": {
+	"id": "github/MaceKuailv/seaduck",
+	"title": "github/MaceKuailv/seaduck",
+	"url": " https://rseng.github.io/software/repository/github/MaceKuailv/seaduck",
+	"content": "A python package that interpolates data from ocean dataset from both Eulerian and Lagrangian perspective."
 	},
-	"github/halomod/hmf": {
-	"id": "github/halomod/hmf",
-	"title": "github/halomod/hmf",
-	"url": " https://rseng.github.io/software/repository/github/halomod/hmf",
-	"content": "Python halo mass function calculator"
+	"github/espnet/espnet": {
+	"id": "github/espnet/espnet",
+	"title": "github/espnet/espnet",
+	"url": " https://rseng.github.io/software/repository/github/espnet/espnet",
+	"content": "End-to-End Speech Processing Toolkit"
 	},
-	"github/hillerlab/GenomeAlignmentTools": {
-	"id": "github/hillerlab/GenomeAlignmentTools",
-	"title": "github/hillerlab/GenomeAlignmentTools",
-	"url": " https://rseng.github.io/software/repository/github/hillerlab/GenomeAlignmentTools",
-	"content": "Tools for improving the sensitivity and specificity of genome alignments"
+	"github/jgducoin/galclaim": {
+	"id": "github/jgducoin/galclaim",
+	"title": "github/jgducoin/galclaim",
+	"url": " https://rseng.github.io/software/repository/github/jgducoin/galclaim",
+	"content": "GALaxy Chance of Local Alignment algorIthM"
 	},
-	"github/robynlm/ebweyl": {
-	"id": "github/robynlm/ebweyl",
-	"title": "github/robynlm/ebweyl",
-	"url": " https://rseng.github.io/software/repository/github/robynlm/ebweyl",
+	"github/dnonatar/Sequoia": {
+	"id": "github/dnonatar/Sequoia",
+	"title": "github/dnonatar/Sequoia",
+	"url": " https://rseng.github.io/software/repository/github/dnonatar/Sequoia",
 	"content": "None"
 	},
-	"github/robynlm/sphereint": {
-	"id": "github/robynlm/sphereint",
-	"title": "github/robynlm/sphereint",
-	"url": " https://rseng.github.io/software/repository/github/robynlm/sphereint",
-	"content": "Code to integrate data on a grid within a sphere"
+	"github/jarvist/Julia-Phonons": {
+	"id": "github/jarvist/Julia-Phonons",
+	"title": "github/jarvist/Julia-Phonons",
+	"url": " https://rseng.github.io/software/repository/github/jarvist/Julia-Phonons",
+	"content": "Julia codes to play with Phonons"
 	},
-	"github/robynlm/ICPertFLRW": {
-	"id": "github/robynlm/ICPertFLRW",
-	"title": "github/robynlm/ICPertFLRW",
-	"url": " https://rseng.github.io/software/repository/github/robynlm/ICPertFLRW",
-	"content": "None"
+	"github/stammler/dustpylib": {
+	"id": "github/stammler/dustpylib",
+	"title": "github/stammler/dustpylib",
+	"url": " https://rseng.github.io/software/repository/github/stammler/dustpylib",
+	"content": "Library with auxiliary modules for DustPy"
 	},
-	"github/karlotness/adrt": {
-	"id": "github/karlotness/adrt",
-	"title": "github/karlotness/adrt",
-	"url": " https://rseng.github.io/software/repository/github/karlotness/adrt",
-	"content": "Fast approximate discrete Radon transform for NumPy arrays"
+	"github/stammler/simframe": {
+	"id": "github/stammler/simframe",
+	"title": "github/stammler/simframe",
+	"url": " https://rseng.github.io/software/repository/github/stammler/simframe",
+	"content": "Python framework for setting up and running scientific simulations. It comes with a variety of integration schemes and some infrastructure of reading and writing data files."
 	},
-	"github/debbiemarkslab/plmc": {
-	"id": "github/debbiemarkslab/plmc",
-	"title": "github/debbiemarkslab/plmc",
-	"url": " https://rseng.github.io/software/repository/github/debbiemarkslab/plmc",
-	"content": "Inference of couplings in proteins and RNAs from sequence variation"
+	"github/stammler/dustpy": {
+	"id": "github/stammler/dustpy",
+	"title": "github/stammler/dustpy",
+	"url": " https://rseng.github.io/software/repository/github/stammler/dustpy",
+	"content": "Python package for the simulation of dust evolution in protoplanetary disks."
 	},
-	"github/ptaconet/bdd_rntaaf": {
-	"id": "github/ptaconet/bdd_rntaaf",
-	"title": "github/ptaconet/bdd_rntaaf",
-	"url": " https://rseng.github.io/software/repository/github/ptaconet/bdd_rntaaf",
-	"content": "Codes SQL de la première base de données relationelle de la Réserve Naturelle Nationale des Terres australes françaises"
+	"github/the-rccg/hw2d": {
+	"id": "github/the-rccg/hw2d",
+	"title": "github/the-rccg/hw2d",
+	"url": " https://rseng.github.io/software/repository/github/the-rccg/hw2d",
+	"content": "Reference implementation for the Hasegawa-Wakatani model of plasma turbulence inside nuclear fusion reactors in two dimensions"
+	},
+	"github/goualard-f/MicroFloatingPoints.jl": {
+	"id": "github/goualard-f/MicroFloatingPoints.jl",
+	"title": "github/goualard-f/MicroFloatingPoints.jl",
+	"url": " https://rseng.github.io/software/repository/github/goualard-f/MicroFloatingPoints.jl",
+	"content": "A Julia package to manipulate very small IEEE 754 standard-compliant floating-point numbers."
+	},
+	"github/4dn-dcic/pairix": {
+	"id": "github/4dn-dcic/pairix",
+	"title": "github/4dn-dcic/pairix",
+	"url": " https://rseng.github.io/software/repository/github/4dn-dcic/pairix",
+	"content": "1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates"
+	},
+	"github/jeremysanders/contbin": {
+	"id": "github/jeremysanders/contbin",
+	"title": "github/jeremysanders/contbin",
+	"url": " https://rseng.github.io/software/repository/github/jeremysanders/contbin",
+	"content": "Contour binning code"
 	},
-	"github/ptaconet/modisfast": {
-	"id": "github/ptaconet/modisfast",
-	"title": "github/ptaconet/modisfast",
-	"url": " https://rseng.github.io/software/repository/github/ptaconet/modisfast",
-	"content": "Fast and efficient access to MODIS, VIIRS and GPM Earth Observation data with R "
+	"github/jeremysanders/ggm": {
+	"id": "github/jeremysanders/ggm",
+	"title": "github/jeremysanders/ggm",
+	"url": " https://rseng.github.io/software/repository/github/jeremysanders/ggm",
+	"content": "Gaussian gradient magnitude filtering of astronomical images"
 	},
-	"github/sntioudis/papreca": {
-	"id": "github/sntioudis/papreca",
-	"title": "github/sntioudis/papreca",
-	"url": " https://rseng.github.io/software/repository/github/sntioudis/papreca",
-	"content": "PAPRECA hybrid off-lattice kinetic Monte Carlo/molecular dynamics (kMC/MD) simulator"
+	"github/jeremysanders/spex_to_xspec": {
+	"id": "github/jeremysanders/spex_to_xspec",
+	"title": "github/jeremysanders/spex_to_xspec",
+	"url": " https://rseng.github.io/software/repository/github/jeremysanders/spex_to_xspec",
+	"content": "Tool to dump SPEX spectral models into APEC-format tables"
 	},
-	"github/MicGrasso/bigonlight": {
-	"id": "github/MicGrasso/bigonlight",
-	"title": "github/MicGrasso/bigonlight",
-	"url": " https://rseng.github.io/software/repository/github/MicGrasso/bigonlight",
-	"content": "The BiGONLight is a Mathematica package created by Michele Grasso to study light propagation in the geometric optics regime using the Bi-local Geodesic Operator formalism."
+	"github/jeremysanders/dsdeproj": {
+	"id": "github/jeremysanders/dsdeproj",
+	"title": "github/jeremysanders/dsdeproj",
+	"url": " https://rseng.github.io/software/repository/github/jeremysanders/dsdeproj",
+	"content": "Direct Spectral Deprojection code"
 	},
-	"github/girder/viime": {
-	"id": "github/girder/viime",
-	"title": "github/girder/viime",
-	"url": " https://rseng.github.io/software/repository/github/girder/viime",
-	"content": "None"
+	"github/jeremysanders/mbproj2": {
+	"id": "github/jeremysanders/mbproj2",
+	"title": "github/jeremysanders/mbproj2",
+	"url": " https://rseng.github.io/software/repository/github/jeremysanders/mbproj2",
+	"content": "Multi-Band x-ray surface brightness PROJector 2"
 	},
-	"github/galsci/pysm": {
-	"id": "github/galsci/pysm",
-	"title": "github/galsci/pysm",
-	"url": " https://rseng.github.io/software/repository/github/galsci/pysm",
-	"content": "PySM 3: Sky emission simulations for Cosmic Microwave Background experiments"
+	"github/jeremysanders/xspec_emcee": {
+	"id": "github/jeremysanders/xspec_emcee",
+	"title": "github/jeremysanders/xspec_emcee",
+	"url": " https://rseng.github.io/software/repository/github/jeremysanders/xspec_emcee",
+	"content": "Use EMCEE to do MCMC analyses of spectra in XSPEC"
 	},
-	"github/macrocosme/amber_meta": {
-	"id": "github/macrocosme/amber_meta",
-	"title": "github/macrocosme/amber_meta",
-	"url": " https://rseng.github.io/software/repository/github/macrocosme/amber_meta",
-	"content": "Routines to launch amber in a meta manner"
+	"github/krab1k/ChargeFW2": {
+	"id": "github/krab1k/ChargeFW2",
+	"title": "github/krab1k/ChargeFW2",
+	"url": " https://rseng.github.io/software/repository/github/krab1k/ChargeFW2",
+	"content": "The core part of Atomic Charge Calculator II."
 	},
-	"github/macrocosme/time_domain_astronomy_sandbox": {
-	"id": "github/macrocosme/time_domain_astronomy_sandbox",
-	"title": "github/macrocosme/time_domain_astronomy_sandbox",
-	"url": " https://rseng.github.io/software/repository/github/macrocosme/time_domain_astronomy_sandbox",
-	"content": "None"
+	"github/GammaCascade/GCascade": {
+	"id": "github/GammaCascade/GCascade",
+	"title": "github/GammaCascade/GCascade",
+	"url": " https://rseng.github.io/software/repository/github/GammaCascade/GCascade",
+	"content": "Gamma-ray propagation package for Wolfram Mathematica"
 	},
-	"github/mourisl/Lighter": {
-	"id": "github/mourisl/Lighter",
-	"title": "github/mourisl/Lighter",
-	"url": " https://rseng.github.io/software/repository/github/mourisl/Lighter",
-	"content": "Fast and memory-efficient sequencing error corrector"
+	"github/markblokpoel/mathlib": {
+	"id": "github/markblokpoel/mathlib",
+	"title": "github/markblokpoel/mathlib",
+	"url": " https://rseng.github.io/software/repository/github/markblokpoel/mathlib",
+	"content": "None"
 	},
-	"github/LondonBiofoundry/basicsynbio": {
-	"id": "github/LondonBiofoundry/basicsynbio",
-	"title": "github/LondonBiofoundry/basicsynbio",
-	"url": " https://rseng.github.io/software/repository/github/LondonBiofoundry/basicsynbio",
-	"content": "An open-source Python package to facilitate BASIC DNA Assembly workflows"
+	"github/algo-cancer/CAMMiQ": {
+	"id": "github/algo-cancer/CAMMiQ",
+	"title": "github/algo-cancer/CAMMiQ",
+	"url": " https://rseng.github.io/software/repository/github/algo-cancer/CAMMiQ",
+	"content": "Metagenomics microbial abundance quantification"
 	},
-	"github/nlesc/scriptcwl": {
-	"id": "github/nlesc/scriptcwl",
-	"title": "github/nlesc/scriptcwl",
-	"url": " https://rseng.github.io/software/repository/github/nlesc/scriptcwl",
-	"content": "Create cwl workflows by writing a simple Python script"
+	"github/AarhusCosmology/connect_public": {
+	"id": "github/AarhusCosmology/connect_public",
+	"title": "github/AarhusCosmology/connect_public",
+	"url": " https://rseng.github.io/software/repository/github/AarhusCosmology/connect_public",
+	"content": "Public branch of CONNECT"
 	},
-	"github/nlesc/embodied-emotions-scripts": {
-	"id": "github/nlesc/embodied-emotions-scripts",
-	"title": "github/nlesc/embodied-emotions-scripts",
-	"url": " https://rseng.github.io/software/repository/github/nlesc/embodied-emotions-scripts",
+	"github/AarhusCosmology/prospect_public": {
+	"id": "github/AarhusCosmology/prospect_public",
+	"title": "github/AarhusCosmology/prospect_public",
+	"url": " https://rseng.github.io/software/repository/github/AarhusCosmology/prospect_public",
 	"content": "None"
 	},
-	"github/swiss-armed-forces/openburst": {
-	"id": "github/swiss-armed-forces/openburst",
-	"title": "github/swiss-armed-forces/openburst",
-	"url": " https://rseng.github.io/software/repository/github/swiss-armed-forces/openburst",
-	"content": "Software framework for the development and testing of sensor coverage and real-time air target detection analysis."
+	"github/aprsa/dips": {
+	"id": "github/aprsa/dips",
+	"title": "github/aprsa/dips",
+	"url": " https://rseng.github.io/software/repository/github/aprsa/dips",
+	"content": "dips: detrending periodic signals in timeseries."
 	},
-	"github/ndrakos/ICICLE": {
-	"id": "github/ndrakos/ICICLE",
-	"title": "github/ndrakos/ICICLE",
-	"url": " https://rseng.github.io/software/repository/github/ndrakos/ICICLE",
-	"content": "Initial Conditions for Isolated CoLlisionless systEms"
+	"github/aprsa/ebai": {
+	"id": "github/aprsa/ebai",
+	"title": "github/aprsa/ebai",
+	"url": " https://rseng.github.io/software/repository/github/aprsa/ebai",
+	"content": "Eclipsing Binaries with Artificial Intelligence"
 	},
-	"github/jah1994/PyTorchDIA": {
-	"id": "github/jah1994/PyTorchDIA",
-	"title": "github/jah1994/PyTorchDIA",
-	"url": " https://rseng.github.io/software/repository/github/jah1994/PyTorchDIA",
-	"content": "PyTorchDIA is a Difference Image Analysis tool. It is built around the PyTorch machine learning framework, and uses automatic differentiation and (optional) GPU support to perform lightning fast optimisations of image models."
+	"github/Libsharp/libsharp": {
+	"id": "github/Libsharp/libsharp",
+	"title": "github/Libsharp/libsharp",
+	"url": " https://rseng.github.io/software/repository/github/Libsharp/libsharp",
+	"content": "Library for fast spherical harmonic transforms, see http://arxiv.org/abs/1303.4945"
 	},
-	"github/Bishop-Laboratory/RLoop-QC-Meta-Analysis-Miller-2022": {
-	"id": "github/Bishop-Laboratory/RLoop-QC-Meta-Analysis-Miller-2022",
-	"title": "github/Bishop-Laboratory/RLoop-QC-Meta-Analysis-Miller-2022",
-	"url": " https://rseng.github.io/software/repository/github/Bishop-Laboratory/RLoop-QC-Meta-Analysis-Miller-2022",
-	"content": "Generates figures for &#34;Quality-controlled R-loop meta-analysis reveals the characteristics of R-loop consensus regions&#34;"
+	"github/erling6232/imagedata": {
+	"id": "github/erling6232/imagedata",
+	"title": "github/erling6232/imagedata",
+	"url": " https://rseng.github.io/software/repository/github/erling6232/imagedata",
+	"content": "Read/write medical image data"
 	},
-	"github/michalychforever/CLASS-PT": {
-	"id": "github/michalychforever/CLASS-PT",
-	"title": "github/michalychforever/CLASS-PT",
-	"url": " https://rseng.github.io/software/repository/github/michalychforever/CLASS-PT",
-	"content": "Nonlinear perturbation theory extension of the Boltzmann code CLASS"
+	"github/pjedge/longshot": {
+	"id": "github/pjedge/longshot",
+	"title": "github/pjedge/longshot",
+	"url": " https://rseng.github.io/software/repository/github/pjedge/longshot",
+	"content": "diploid SNV caller for error-prone reads"
 	},
-	"github/molscat/molscat": {
-	"id": "github/molscat/molscat",
-	"title": "github/molscat/molscat",
-	"url": " https://rseng.github.io/software/repository/github/molscat/molscat",
-	"content": "None"
+	"github/bjmorgan/py-sc-fermi": {
+	"id": "github/bjmorgan/py-sc-fermi",
+	"title": "github/bjmorgan/py-sc-fermi",
+	"url": " https://rseng.github.io/software/repository/github/bjmorgan/py-sc-fermi",
+	"content": "py-sc-fermi is a materials modelling code for calculating self-consistent Fermi energies and defect concentrations under thermodynamic equilibrium (or quasi-equilibrium) given defect formation energies."
 	},
-	"github/sdss/marvin": {
-	"id": "github/sdss/marvin",
-	"title": "github/sdss/marvin",
-	"url": " https://rseng.github.io/software/repository/github/sdss/marvin",
-	"content": "Data access and visualization for MaNGA. http://sdss-marvin.readthedocs.io/en/latest/"
+	"github/jdidion/atropos": {
+	"id": "github/jdidion/atropos",
+	"title": "github/jdidion/atropos",
+	"url": " https://rseng.github.io/software/repository/github/jdidion/atropos",
+	"content": "An NGS read trimming tool that is specific, sensitive, and speedy. (production)"
 	},
-	"github/gdrouart/MrMoose": {
-	"id": "github/gdrouart/MrMoose",
-	"title": "github/gdrouart/MrMoose",
-	"url": " https://rseng.github.io/software/repository/github/gdrouart/MrMoose",
-	"content": "MrMoose  is a Spectral Energy Distribution fitting procedure  using a Bayesian framework. In a nutshell, this code allows to fit user-defined models onto a set of multi-wavelength data, making use of spatial information and upper-limits with a consistent treatment. The code is highly flexible to allow its use for sources with complex structures."
+	"github/ewatercycle/era5cli": {
+	"id": "github/ewatercycle/era5cli",
+	"title": "github/ewatercycle/era5cli",
+	"url": " https://rseng.github.io/software/repository/github/ewatercycle/era5cli",
+	"content": "Command Line Interface to download ERA5 from Copernicus Climate Data Service"
 	},
-	"github/teoxxx/rlos": {
-	"id": "github/teoxxx/rlos",
-	"title": "github/teoxxx/rlos",
-	"url": " https://rseng.github.io/software/repository/github/teoxxx/rlos",
-	"content": "RLOS Relativistic Line of Sight, time-resolved imaging of model astrophysical jets"
+	"github/rzellem/EXOTIC": {
+	"id": "github/rzellem/EXOTIC",
+	"title": "github/rzellem/EXOTIC",
+	"url": " https://rseng.github.io/software/repository/github/rzellem/EXOTIC",
+	"content": "EXOplanet Transit Interpretation Code"
 	},
-	"github/teoxxx/nemiss_pbl": {
-	"id": "github/teoxxx/nemiss_pbl",
-	"title": "github/teoxxx/nemiss_pbl",
-	"url": " https://rseng.github.io/software/repository/github/teoxxx/nemiss_pbl",
-	"content": "nemiss neutrino emission from hydrocode data describing a simulated stellar binary system"
+	"github/ReGIS-org/regis-v2": {
+	"id": "github/ReGIS-org/regis-v2",
+	"title": "github/ReGIS-org/regis-v2",
+	"url": " https://rseng.github.io/software/repository/github/ReGIS-org/regis-v2",
+	"content": "Angular-4 and cesiumjs based."
 	},
-	"github/teoxxx/nemiss_proper": {
-	"id": "github/teoxxx/nemiss_proper",
-	"title": "github/teoxxx/nemiss_proper",
-	"url": " https://rseng.github.io/software/repository/github/teoxxx/nemiss_proper",
-	"content": "nemiss code repo 2023"
+	"github/seclark/RHT": {
+	"id": "github/seclark/RHT",
+	"title": "github/seclark/RHT",
+	"url": " https://rseng.github.io/software/repository/github/seclark/RHT",
+	"content": "The Rolling Hough Transform"
 	},
-	"github/aiidateam/kiwipy": {
-	"id": "github/aiidateam/kiwipy",
-	"title": "github/aiidateam/kiwipy",
-	"url": " https://rseng.github.io/software/repository/github/aiidateam/kiwipy",
-	"content": "A python messaging library for RPC, task queues and broadcasts"
+	"github/nevrome/bleiglas": {
+	"id": "github/nevrome/bleiglas",
+	"title": "github/nevrome/bleiglas",
+	"url": " https://rseng.github.io/software/repository/github/nevrome/bleiglas",
+	"content": "R Package - Spatiotemporal Data Interpolation and Visualisation based on 3D Tessellation"
 	},
-	"github/aiidateam/aiida-core": {
-	"id": "github/aiidateam/aiida-core",
-	"title": "github/aiidateam/aiida-core",
-	"url": " https://rseng.github.io/software/repository/github/aiidateam/aiida-core",
-	"content": "The official repository for the AiiDA code"
+	"github/miniufo/xinvert": {
+	"id": "github/miniufo/xinvert",
+	"title": "github/miniufo/xinvert",
+	"url": " https://rseng.github.io/software/repository/github/miniufo/xinvert",
+	"content": "Invert geophysical fluid dynamic problems (elliptic partial differential equations) using SOR iteration method."
 	},
-	"github/tholoien/empiriciSN": {
-	"id": "github/tholoien/empiriciSN",
-	"title": "github/tholoien/empiriciSN",
-	"url": " https://rseng.github.io/software/repository/github/tholoien/empiriciSN",
-	"content": "Generate realistic parameters for a SN given host galaxy observations based on empirical correlations from SN datasets"
+	"github/eleniadam/npgreat": {
+	"id": "github/eleniadam/npgreat",
+	"title": "github/eleniadam/npgreat",
+	"url": " https://rseng.github.io/software/repository/github/eleniadam/npgreat",
+	"content": "A hybrid assembly method that utilizes Nanopore and Linked-Reads datasets for the assembly of the human subtelomere regions."
 	},
-	"github/tholoien/XDGMM": {
-	"id": "github/tholoien/XDGMM",
-	"title": "github/tholoien/XDGMM",
-	"url": " https://rseng.github.io/software/repository/github/tholoien/XDGMM",
-	"content": "A wrapper class for the scikit-learn BaseEstimator class that implements both the astroML and Bovy et al. (2011) XDGMM methods."
+	"github/EdanRein/pyPplusS": {
+	"id": "github/EdanRein/pyPplusS",
+	"title": "github/EdanRein/pyPplusS",
+	"url": " https://rseng.github.io/software/repository/github/EdanRein/pyPplusS",
+	"content": "pyPplusS code package for modeling exoplanets with rings"
 	},
-	"github/DataIntellSystLab/KARGA": {
-	"id": "github/DataIntellSystLab/KARGA",
-	"title": "github/DataIntellSystLab/KARGA",
-	"url": " https://rseng.github.io/software/repository/github/DataIntellSystLab/KARGA",
-	"content": "Multi-platform Toolkit for k-mer-based Antibiotic Resistance Gene Analysis of High-throughput Sequencing Data"
+	"github/nickk124/RCR": {
+	"id": "github/nickk124/RCR",
+	"title": "github/nickk124/RCR",
+	"url": " https://rseng.github.io/software/repository/github/nickk124/RCR",
+	"content": "Robust Chauvenet Rejection: RCR is advanced, but easy to use, outlier rejection."
 	},
-	"github/mdshw5/pyfaidx": {
-	"id": "github/mdshw5/pyfaidx",
-	"title": "github/mdshw5/pyfaidx",
-	"url": " https://rseng.github.io/software/repository/github/mdshw5/pyfaidx",
-	"content": "Efficient pythonic random access to fasta subsequences"
+	"github/padster/pyNeuroTrace": {
+	"id": "github/padster/pyNeuroTrace",
+	"title": "github/padster/pyNeuroTrace",
+	"url": " https://rseng.github.io/software/repository/github/padster/pyNeuroTrace",
+	"content": "Python code for processing neural timeseries"
 	},
-	"github/mscroggs/symfem": {
-	"id": "github/mscroggs/symfem",
-	"title": "github/mscroggs/symfem",
-	"url": " https://rseng.github.io/software/repository/github/mscroggs/symfem",
-	"content": "A symbolic finite element definition library"
+	"github/mroosmalen/nanosv": {
+	"id": "github/mroosmalen/nanosv",
+	"title": "github/mroosmalen/nanosv",
+	"url": " https://rseng.github.io/software/repository/github/mroosmalen/nanosv",
+	"content": "SV caller for nanopore data"
 	},
-	"github/wangjun1996/VisFeature": {
-	"id": "github/wangjun1996/VisFeature",
-	"title": "github/wangjun1996/VisFeature",
-	"url": " https://rseng.github.io/software/repository/github/wangjun1996/VisFeature",
-	"content": "A stand-alone program for visualizing and analyzing statistical features of biological sequences"
+	"github/mpip/pfft": {
+	"id": "github/mpip/pfft",
+	"title": "github/mpip/pfft",
+	"url": " https://rseng.github.io/software/repository/github/mpip/pfft",
+	"content": "Parallel fast Fourier transforms"
+	},
+	"github/hpgem/nanomesh": {
+	"id": "github/hpgem/nanomesh",
+	"title": "github/hpgem/nanomesh",
+	"url": " https://rseng.github.io/software/repository/github/hpgem/nanomesh",
+	"content": "Python workflow tool for generating meshes from 2D and 3D microscopy image data"
 	},
 	"github/sonny-harman/snowball": {
 	"id": "github/sonny-harman/snowball",
@@ -3381,641 +2499,641 @@
 	"url": " https://rseng.github.io/software/repository/github/sonny-harman/snowball",
 	"content": "Generalizable atmospheric mass loss calculator"
 	},
-	"github/WangLabTHU/DeSP": {
-	"id": "github/WangLabTHU/DeSP",
-	"title": "github/WangLabTHU/DeSP",
-	"url": " https://rseng.github.io/software/repository/github/WangLabTHU/DeSP",
-	"content": "DNA-D2S: a systematic error simulation Model for DNA Data Storage channel"
+	"github/christiangil/StellarSpectraObservationFitting.jl": {
+	"id": "github/christiangil/StellarSpectraObservationFitting.jl",
+	"title": "github/christiangil/StellarSpectraObservationFitting.jl",
+	"url": " https://rseng.github.io/software/repository/github/christiangil/StellarSpectraObservationFitting.jl",
+	"content": "Data-driven models for extremely precise radial velocity  (EPRV) spectra"
 	},
-	"github/cgarraffo/StelNet": {
-	"id": "github/cgarraffo/StelNet",
-	"title": "github/cgarraffo/StelNet",
-	"url": " https://rseng.github.io/software/repository/github/cgarraffo/StelNet",
-	"content": "None"
+	"github/desResLab/LINFA": {
+	"id": "github/desResLab/LINFA",
+	"title": "github/desResLab/LINFA",
+	"url": " https://rseng.github.io/software/repository/github/desResLab/LINFA",
+	"content": "A Python library for variational inference with normalizing flow and annealing"
 	},
-	"github/gdefazio/kMetaShot": {
-	"id": "github/gdefazio/kMetaShot",
-	"title": "github/gdefazio/kMetaShot",
-	"url": " https://rseng.github.io/software/repository/github/gdefazio/kMetaShot",
-	"content": "None"
+	"github/davemlz/eemont": {
+	"id": "github/davemlz/eemont",
+	"title": "github/davemlz/eemont",
+	"url": " https://rseng.github.io/software/repository/github/davemlz/eemont",
+	"content": "A python package that extends Google Earth Engine."
 	},
-	"github/esheldon/ngmix": {
-	"id": "github/esheldon/ngmix",
-	"title": "github/esheldon/ngmix",
-	"url": " https://rseng.github.io/software/repository/github/esheldon/ngmix",
-	"content": "Gaussian mixtures and image processing implemented in python"
+	"github/Ciela-Institute/caustics": {
+	"id": "github/Ciela-Institute/caustics",
+	"title": "github/Ciela-Institute/caustics",
+	"url": " https://rseng.github.io/software/repository/github/Ciela-Institute/caustics",
+	"content": "A gravitational lensing simulator for the machine learning era."
 	},
-	"github/catboost/catboost": {
-	"id": "github/catboost/catboost",
-	"title": "github/catboost/catboost",
-	"url": " https://rseng.github.io/software/repository/github/catboost/catboost",
-	"content": "A fast, scalable, high performance Gradient Boosting on Decision Trees library, used for ranking, classification, regression and other machine learning tasks for Python, R, Java, C++. Supports computation on CPU and GPU."
+	"github/Liltsliverfish/A-time-series-reconstruction-method-of-massive-astronomical-catalogues-based-on-Spark": {
+	"id": "github/Liltsliverfish/A-time-series-reconstruction-method-of-massive-astronomical-catalogues-based-on-Spark",
+	"title": "github/Liltsliverfish/A-time-series-reconstruction-method-of-massive-astronomical-catalogues-based-on-Spark",
+	"url": " https://rseng.github.io/software/repository/github/Liltsliverfish/A-time-series-reconstruction-method-of-massive-astronomical-catalogues-based-on-Spark",
+	"content": "A method for time-series reconstruction of massive astronomical catalogues."
 	},
-	"github/ncbi/BAMscale": {
-	"id": "github/ncbi/BAMscale",
-	"title": "github/ncbi/BAMscale",
-	"url": " https://rseng.github.io/software/repository/github/ncbi/BAMscale",
-	"content": "BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods."
+	"github/Markusjsommer/BalrogCPP": {
+	"id": "github/Markusjsommer/BalrogCPP",
+	"title": "github/Markusjsommer/BalrogCPP",
+	"url": " https://rseng.github.io/software/repository/github/Markusjsommer/BalrogCPP",
+	"content": "A universal protein model for prokaryotic gene prediction"
 	},
-	"github/ncbi/ncbi-vdb": {
-	"id": "github/ncbi/ncbi-vdb",
-	"title": "github/ncbi/ncbi-vdb",
-	"url": " https://rseng.github.io/software/repository/github/ncbi/ncbi-vdb",
-	"content": "ncbi-vdb"
+	"github/gbrammer/unicorn": {
+	"id": "github/gbrammer/unicorn",
+	"title": "github/gbrammer/unicorn",
+	"url": " https://rseng.github.io/software/repository/github/gbrammer/unicorn",
+	"content": "Full 3D-HST grism pipeline"
 	},
-	"github/ncbi/TPMCalculator": {
-	"id": "github/ncbi/TPMCalculator",
-	"title": "github/ncbi/TPMCalculator",
-	"url": " https://rseng.github.io/software/repository/github/ncbi/TPMCalculator",
-	"content": "TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files"
+	"github/gbrammer/grizli": {
+	"id": "github/gbrammer/grizli",
+	"title": "github/gbrammer/grizli",
+	"url": " https://rseng.github.io/software/repository/github/gbrammer/grizli",
+	"content": "Grizli:  The &#34;Grism redshift and line&#34; analysis software"
 	},
-	"github/ncbi/SKESA": {
-	"id": "github/ncbi/SKESA",
-	"title": "github/ncbi/SKESA",
-	"url": " https://rseng.github.io/software/repository/github/ncbi/SKESA",
-	"content": "SKESA assembler"
+	"github/gbrammer/threedhst": {
+	"id": "github/gbrammer/threedhst",
+	"title": "github/gbrammer/threedhst",
+	"url": " https://rseng.github.io/software/repository/github/gbrammer/threedhst",
+	"content": "3D-HST grism analysis software"
 	},
-	"github/ncbi/igblast": {
-	"id": "github/ncbi/igblast",
-	"title": "github/ncbi/igblast",
-	"url": " https://rseng.github.io/software/repository/github/ncbi/igblast",
-	"content": "Immunoglobulin and T cell receptor variable domain sequence analysis"
+	"github/DLR-RM/BlenderProc": {
+	"id": "github/DLR-RM/BlenderProc",
+	"title": "github/DLR-RM/BlenderProc",
+	"url": " https://rseng.github.io/software/repository/github/DLR-RM/BlenderProc",
+	"content": "A procedural Blender pipeline for photorealistic training image generation"
 	},
-	"github/ncbi/datasets": {
-	"id": "github/ncbi/datasets",
-	"title": "github/ncbi/datasets",
-	"url": " https://rseng.github.io/software/repository/github/ncbi/datasets",
-	"content": "NCBI Datasets is an experimental resource for finding and building datasets"
+	"github/MOSAICS-NIH/MOSAICS": {
+	"id": "github/MOSAICS-NIH/MOSAICS",
+	"title": "github/MOSAICS-NIH/MOSAICS",
+	"url": " https://rseng.github.io/software/repository/github/MOSAICS-NIH/MOSAICS",
+	"content": "A collection of tools for characterizing membrane structure and dynamics within simulated trajectories of molecular systems."
 	},
-	"github/ncbi/vadr": {
-	"id": "github/ncbi/vadr",
-	"title": "github/ncbi/vadr",
-	"url": " https://rseng.github.io/software/repository/github/ncbi/vadr",
-	"content": "Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation"
+	"github/NKI-AI/direct": {
+	"id": "github/NKI-AI/direct",
+	"title": "github/NKI-AI/direct",
+	"url": " https://rseng.github.io/software/repository/github/NKI-AI/direct",
+	"content": "Deep learning framework for MRI reconstruction"
 	},
-	"github/ncbi/SRPRISM": {
-	"id": "github/ncbi/SRPRISM",
-	"title": "github/ncbi/SRPRISM",
-	"url": " https://rseng.github.io/software/repository/github/ncbi/SRPRISM",
-	"content": "Short Read Alignment Tool"
+	"github/GooglingTheCancerGenome/sv-gen": {
+	"id": "github/GooglingTheCancerGenome/sv-gen",
+	"title": "github/GooglingTheCancerGenome/sv-gen",
+	"url": " https://rseng.github.io/software/repository/github/GooglingTheCancerGenome/sv-gen",
+	"content": "Snakemake-based workflow for generating artificial genomes with structural variants"
 	},
-	"github/ncbi/ngs": {
-	"id": "github/ncbi/ngs",
-	"title": "github/ncbi/ngs",
-	"url": " https://rseng.github.io/software/repository/github/ncbi/ngs",
-	"content": "NGS Language Bindings"
+	"github/GooglingTheCancerGenome/sv-channels": {
+	"id": "github/GooglingTheCancerGenome/sv-channels",
+	"title": "github/GooglingTheCancerGenome/sv-channels",
+	"url": " https://rseng.github.io/software/repository/github/GooglingTheCancerGenome/sv-channels",
+	"content": "Deep learning-based structural variant caller"
 	},
-	"github/ncbi/sra-tools": {
-	"id": "github/ncbi/sra-tools",
-	"title": "github/ncbi/sra-tools",
-	"url": " https://rseng.github.io/software/repository/github/ncbi/sra-tools",
-	"content": "SRA Tools"
+	"github/GooglingTheCancerGenome/sv-callers": {
+	"id": "github/GooglingTheCancerGenome/sv-callers",
+	"title": "github/GooglingTheCancerGenome/sv-callers",
+	"url": " https://rseng.github.io/software/repository/github/GooglingTheCancerGenome/sv-callers",
+	"content": "Snakemake-based workflow for detecting structural variants in WGS data"
 	},
-	"github/linDing-groups/Deep-4mCW2V": {
-	"id": "github/linDing-groups/Deep-4mCW2V",
-	"title": "github/linDing-groups/Deep-4mCW2V",
-	"url": " https://rseng.github.io/software/repository/github/linDing-groups/Deep-4mCW2V",
-	"content": "A sequence-based deep learning approach to predict N4-methylcytosine sites in Escherichia coli "
+	"github/bartongroup/RoSA": {
+	"id": "github/bartongroup/RoSA",
+	"title": "github/bartongroup/RoSA",
+	"url": " https://rseng.github.io/software/repository/github/bartongroup/RoSA",
+	"content": "Antisense analysis scripts"
 	},
-	"github/ericfell/rfbzero": {
-	"id": "github/ericfell/rfbzero",
-	"title": "github/ericfell/rfbzero",
-	"url": " https://rseng.github.io/software/repository/github/ericfell/rfbzero",
-	"content": "Redox flow battery electrochemical cycling models in Python"
+	"github/bartongroup/yanosim": {
+	"id": "github/bartongroup/yanosim",
+	"title": "github/bartongroup/yanosim",
+	"url": " https://rseng.github.io/software/repository/github/bartongroup/yanosim",
+	"content": "Nanopore DRS read simulator"
 	},
-	"github/songningqiang/CosmoLED": {
-	"id": "github/songningqiang/CosmoLED",
-	"title": "github/songningqiang/CosmoLED",
-	"url": " https://rseng.github.io/software/repository/github/songningqiang/CosmoLED",
-	"content": "None"
+	"github/marinebon/obisindicators": {
+	"id": "github/marinebon/obisindicators",
+	"title": "github/marinebon/obisindicators",
+	"url": " https://rseng.github.io/software/repository/github/marinebon/obisindicators",
+	"content": "R package for generating indicators from OBIS"
 	},
-	"github/jfalconbarroso/BAYES-LOSVD": {
-	"id": "github/jfalconbarroso/BAYES-LOSVD",
-	"title": "github/jfalconbarroso/BAYES-LOSVD",
-	"url": " https://rseng.github.io/software/repository/github/jfalconbarroso/BAYES-LOSVD",
-	"content": "Non-parametric recovery of the LOSVD of galaxies"
+	"github/iquasere/UPIMAPI": {
+	"id": "github/iquasere/UPIMAPI",
+	"title": "github/iquasere/UPIMAPI",
+	"url": " https://rseng.github.io/software/repository/github/iquasere/UPIMAPI",
+	"content": "UniProt Id Mapping through API"
+	},
+	"github/seisman/HinetPy": {
+	"id": "github/seisman/HinetPy",
+	"title": "github/seisman/HinetPy",
+	"url": " https://rseng.github.io/software/repository/github/seisman/HinetPy",
+	"content": "A Python package for accessing and processing NIED Hi-net seismic data."
+	},
+	"github/DRMacIver/shrinkray": {
+	"id": "github/DRMacIver/shrinkray",
+	"title": "github/DRMacIver/shrinkray",
+	"url": " https://rseng.github.io/software/repository/github/DRMacIver/shrinkray",
+	"content": "Shrink Ray is a new test-case reducer designed to be effective on a wide range of formats"
+	},
+	"github/sntioudis/papreca": {
+	"id": "github/sntioudis/papreca",
+	"title": "github/sntioudis/papreca",
+	"url": " https://rseng.github.io/software/repository/github/sntioudis/papreca",
+	"content": "PAPRECA hybrid off-lattice kinetic Monte Carlo/molecular dynamics (kMC/MD) simulator"
 	},
-	"github/freelawproject/eyecite": {
-	"id": "github/freelawproject/eyecite",
-	"title": "github/freelawproject/eyecite",
-	"url": " https://rseng.github.io/software/repository/github/freelawproject/eyecite",
-	"content": "Find legal citations in any block of text"
+	"github/tyo-nu/MINE-app": {
+	"id": "github/tyo-nu/MINE-app",
+	"title": "github/tyo-nu/MINE-app",
+	"url": " https://rseng.github.io/software/repository/github/tyo-nu/MINE-app",
+	"content": "Web application for the MINE databases"
 	},
-	"github/he2016012996/CABnet": {
-	"id": "github/he2016012996/CABnet",
-	"title": "github/he2016012996/CABnet",
-	"url": " https://rseng.github.io/software/repository/github/he2016012996/CABnet",
+	"github/tyo-nu/pickaxe_paper": {
+	"id": "github/tyo-nu/pickaxe_paper",
+	"title": "github/tyo-nu/pickaxe_paper",
+	"url": " https://rseng.github.io/software/repository/github/tyo-nu/pickaxe_paper",
 	"content": "None"
 	},
-	"github/FRBs/FRB": {
-	"id": "github/FRBs/FRB",
-	"title": "github/FRBs/FRB",
-	"url": " https://rseng.github.io/software/repository/github/FRBs/FRB",
-	"content": "Python code related to DM calculations, estimations, and analysis"
-	},
-	"github/SchmidtDSE/afscgap": {
-	"id": "github/SchmidtDSE/afscgap",
-	"title": "github/SchmidtDSE/afscgap",
-	"url": " https://rseng.github.io/software/repository/github/SchmidtDSE/afscgap",
-	"content": "Python-based tools for NOAA AFSC GAP marine species surveys data"
+	"github/biaslab/RxInfer.jl": {
+	"id": "github/biaslab/RxInfer.jl",
+	"title": "github/biaslab/RxInfer.jl",
+	"url": " https://rseng.github.io/software/repository/github/biaslab/RxInfer.jl",
+	"content": "Julia package for automated Bayesian inference on a factor graph with reactive message passing"
 	},
-	"github/fairtracks/omnipy_examples": {
-	"id": "github/fairtracks/omnipy_examples",
-	"title": "github/fairtracks/omnipy_examples",
-	"url": " https://rseng.github.io/software/repository/github/fairtracks/omnipy_examples",
+	"github/zenitani/OpenMHD": {
+	"id": "github/zenitani/OpenMHD",
+	"title": "github/zenitani/OpenMHD",
+	"url": " https://rseng.github.io/software/repository/github/zenitani/OpenMHD",
 	"content": "None"
 	},
-	"github/MichaelAbdul-Masih/SPAMMS": {
-	"id": "github/MichaelAbdul-Masih/SPAMMS",
-	"title": "github/MichaelAbdul-Masih/SPAMMS",
-	"url": " https://rseng.github.io/software/repository/github/MichaelAbdul-Masih/SPAMMS",
-	"content": "None"
+	"github/flekschas/jupyter-scatter": {
+	"id": "github/flekschas/jupyter-scatter",
+	"title": "github/flekschas/jupyter-scatter",
+	"url": " https://rseng.github.io/software/repository/github/flekschas/jupyter-scatter",
+	"content": "Interactive 2D scatter plot widget for Jupyter Lab and Notebook. Scales to millions of points!"
 	},
-	"github/icb-dcm/pyabc": {
-	"id": "github/icb-dcm/pyabc",
-	"title": "github/icb-dcm/pyabc",
-	"url": " https://rseng.github.io/software/repository/github/icb-dcm/pyabc",
-	"content": "distributed, likelihood-free inference"
+	"github/flekschas/regl-scatterplot": {
+	"id": "github/flekschas/regl-scatterplot",
+	"title": "github/flekschas/regl-scatterplot",
+	"url": " https://rseng.github.io/software/repository/github/flekschas/regl-scatterplot",
+	"content": "Scalable WebGL-based scatter plot library build with Regl"
 	},
-	"github/jianhuupenn/SpaGCN": {
-	"id": "github/jianhuupenn/SpaGCN",
-	"title": "github/jianhuupenn/SpaGCN",
-	"url": " https://rseng.github.io/software/repository/github/jianhuupenn/SpaGCN",
-	"content": "SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network"
+	"github/geoelements/gns": {
+	"id": "github/geoelements/gns",
+	"title": "github/geoelements/gns",
+	"url": " https://rseng.github.io/software/repository/github/geoelements/gns",
+	"content": "Graph Network Simulator"
 	},
-	"github/Social-Evolution-and-Behavior/anTraX": {
-	"id": "github/Social-Evolution-and-Behavior/anTraX",
-	"title": "github/Social-Evolution-and-Behavior/anTraX",
-	"url": " https://rseng.github.io/software/repository/github/Social-Evolution-and-Behavior/anTraX",
-	"content": "anTraX: high throughput tracking of color-tagged insects"
+	"github/gperezs/StarcNet": {
+	"id": "github/gperezs/StarcNet",
+	"title": "github/gperezs/StarcNet",
+	"url": " https://rseng.github.io/software/repository/github/gperezs/StarcNet",
+	"content": "Machine learning for star cluster classification"
 	},
-	"github/seheonoh/baygaud": {
-	"id": "github/seheonoh/baygaud",
-	"title": "github/seheonoh/baygaud",
-	"url": " https://rseng.github.io/software/repository/github/seheonoh/baygaud",
+	"github/SpaceML/GalaxyGAN": {
+	"id": "github/SpaceML/GalaxyGAN",
+	"title": "github/SpaceML/GalaxyGAN",
+	"url": " https://rseng.github.io/software/repository/github/SpaceML/GalaxyGAN",
 	"content": "None"
 	},
-	"github/seheonoh/2dbat": {
-	"id": "github/seheonoh/2dbat",
-	"title": "github/seheonoh/2dbat",
-	"url": " https://rseng.github.io/software/repository/github/seheonoh/2dbat",
-	"content": "2dbat v1.0"
+	"github/nonlocalmodels/NLMech": {
+	"id": "github/nonlocalmodels/NLMech",
+	"title": "github/nonlocalmodels/NLMech",
+	"url": " https://rseng.github.io/software/repository/github/nonlocalmodels/NLMech",
+	"content": "Implementation of finite element and finite difference approximation of Nonlocal models"
 	},
-	"github/bacpop/ska.rust": {
-	"id": "github/bacpop/ska.rust",
-	"title": "github/bacpop/ska.rust",
-	"url": " https://rseng.github.io/software/repository/github/bacpop/ska.rust",
-	"content": "Split k-mer analysis – version 2"
+	"github/bootphon/phonemizer": {
+	"id": "github/bootphon/phonemizer",
+	"title": "github/bootphon/phonemizer",
+	"url": " https://rseng.github.io/software/repository/github/bootphon/phonemizer",
+	"content": "Simple text to phones converter for multiple languages"
 	},
-	"github/bacpop/PopPUNK": {
-	"id": "github/bacpop/PopPUNK",
-	"title": "github/bacpop/PopPUNK",
-	"url": " https://rseng.github.io/software/repository/github/bacpop/PopPUNK",
-	"content": "PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)"
+	"github/annagraff/densify": {
+	"id": "github/annagraff/densify",
+	"title": "github/annagraff/densify",
+	"url": " https://rseng.github.io/software/repository/github/annagraff/densify",
+	"content": "None"
 	},
-	"github/Novartis/torchsurv": {
-	"id": "github/Novartis/torchsurv",
-	"title": "github/Novartis/torchsurv",
-	"url": " https://rseng.github.io/software/repository/github/Novartis/torchsurv",
-	"content": "Deep survival analysis made easy "
+	"github/astro-datalab/noaosourcecatalog": {
+	"id": "github/astro-datalab/noaosourcecatalog",
+	"title": "github/astro-datalab/noaosourcecatalog",
+	"url": " https://rseng.github.io/software/repository/github/astro-datalab/noaosourcecatalog",
+	"content": "Source catalog of all NOAO imaging data"
 	},
-	"github/jesford/cluster-lensing": {
-	"id": "github/jesford/cluster-lensing",
-	"title": "github/jesford/cluster-lensing",
-	"url": " https://rseng.github.io/software/repository/github/jesford/cluster-lensing",
-	"content": "Galaxy Cluster and Weak Lensing Tools"
+	"github/ECP-copa/Cabana": {
+	"id": "github/ECP-copa/Cabana",
+	"title": "github/ECP-copa/Cabana",
+	"url": " https://rseng.github.io/software/repository/github/ECP-copa/Cabana",
+	"content": "Performance-portable library for particle-based simulations"
 	},
-	"github/schulze61/RhoPop": {
-	"id": "github/schulze61/RhoPop",
-	"title": "github/schulze61/RhoPop",
-	"url": " https://rseng.github.io/software/repository/github/schulze61/RhoPop",
-	"content": "None"
+	"github/hillerlab/GenomeAlignmentTools": {
+	"id": "github/hillerlab/GenomeAlignmentTools",
+	"title": "github/hillerlab/GenomeAlignmentTools",
+	"url": " https://rseng.github.io/software/repository/github/hillerlab/GenomeAlignmentTools",
+	"content": "Tools for improving the sensitivity and specificity of genome alignments"
 	},
-	"github/cmayer/BaitFisher-package": {
-	"id": "github/cmayer/BaitFisher-package",
-	"title": "github/cmayer/BaitFisher-package",
-	"url": " https://rseng.github.io/software/repository/github/cmayer/BaitFisher-package",
-	"content": "The BaitFisher-package is a software package for designing hybrid enrichment probes. For more information see:"
+	"github/auctus-team/pycapacity": {
+	"id": "github/auctus-team/pycapacity",
+	"title": "github/auctus-team/pycapacity",
+	"url": " https://rseng.github.io/software/repository/github/auctus-team/pycapacity",
+	"content": "An efficient task-space capacity calculation package for robotics and biomechanics"
 	},
-	"github/beastraban/INSANE": {
-	"id": "github/beastraban/INSANE",
-	"title": "github/beastraban/INSANE",
-	"url": " https://rseng.github.io/software/repository/github/beastraban/INSANE",
-	"content": "INflationary potential Simulator and ANalysis Engine"
+	"github/yyZhang14/dbEssLnc": {
+	"id": "github/yyZhang14/dbEssLnc",
+	"title": "github/yyZhang14/dbEssLnc",
+	"url": " https://rseng.github.io/software/repository/github/yyZhang14/dbEssLnc",
+	"content": "a Vue.js project"
 	},
-	"github/rferdman/afr": {
-	"id": "github/rferdman/afr",
-	"title": "github/rferdman/afr",
-	"url": " https://rseng.github.io/software/repository/github/rferdman/afr",
-	"content": "Software package that includes various routines and tools allowing the user to reduce, process, and manipulate pulsar data, and create times-of-arrival compatible with tempo and tempo2 timing software. "
+	"github/nifty-ppl/nifty": {
+	"id": "github/nifty-ppl/nifty",
+	"title": "github/nifty-ppl/nifty",
+	"url": " https://rseng.github.io/software/repository/github/nifty-ppl/nifty",
+	"content": "Probabilistic programming framework for signal inference algorithms that operate regardless of the underlying grids and their resolutions"
 	},
-	"github/illumina/pyflow": {
-	"id": "github/illumina/pyflow",
-	"title": "github/illumina/pyflow",
-	"url": " https://rseng.github.io/software/repository/github/illumina/pyflow",
-	"content": "A lightweight parallel task engine"
+	"github/bioinform/somaticseq": {
+	"id": "github/bioinform/somaticseq",
+	"title": "github/bioinform/somaticseq",
+	"url": " https://rseng.github.io/software/repository/github/bioinform/somaticseq",
+	"content": "An ensemble approach to accurately detect somatic mutations using SomaticSeq"
 	},
-	"github/MBoemo/DNAscent": {
-	"id": "github/MBoemo/DNAscent",
-	"title": "github/MBoemo/DNAscent",
-	"url": " https://rseng.github.io/software/repository/github/MBoemo/DNAscent",
-	"content": "Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads."
+	"github/soundata/soundata": {
+	"id": "github/soundata/soundata",
+	"title": "github/soundata/soundata",
+	"url": " https://rseng.github.io/software/repository/github/soundata/soundata",
+	"content": "Python library for downloading, loading &amp; working with sound datasets"
 	},
-	"github/AgentM-GEG/residual_feature_extraction": {
-	"id": "github/AgentM-GEG/residual_feature_extraction",
-	"title": "github/AgentM-GEG/residual_feature_extraction",
-	"url": " https://rseng.github.io/software/repository/github/AgentM-GEG/residual_feature_extraction",
-	"content": "A pipeline that carries out feature extraction of residual substructure within the residual images produced by popular galaxy structural-fitting routines such as GALFIT, GIM2D, etc. This pipeline works on model-subtracted residual images by popular structural fitting routines (e.g., GALFIT, GIM2D, etc) to extract faint low surface brightness features by isolating flux-wise and area-wise significant contiguous pixels regions by rigourous masking routine. This routine accepts the image cubes (original image, model image, residual image) and generates several data products"
+	"github/free1234hm/CLAM": {
+	"id": "github/free1234hm/CLAM",
+	"title": "github/free1234hm/CLAM",
+	"url": " https://rseng.github.io/software/repository/github/free1234hm/CLAM",
+	"content": "None"
 	},
-	"github/ryneches/SuchTree": {
-	"id": "github/ryneches/SuchTree",
-	"title": "github/ryneches/SuchTree",
-	"url": " https://rseng.github.io/software/repository/github/ryneches/SuchTree",
-	"content": "A Python library for fast, thread-safe computations on phylogenetic trees"
+	"github/mdlreyes/void-dwarf-analysis": {
+	"id": "github/mdlreyes/void-dwarf-analysis",
+	"title": "github/mdlreyes/void-dwarf-analysis",
+	"url": " https://rseng.github.io/software/repository/github/mdlreyes/void-dwarf-analysis",
+	"content": "Reduction and analysis code used to measure kinematics of void dwarf galaxies"
 	},
-	"github/gmarcais/Jellyfish": {
-	"id": "github/gmarcais/Jellyfish",
-	"title": "github/gmarcais/Jellyfish",
-	"url": " https://rseng.github.io/software/repository/github/gmarcais/Jellyfish",
-	"content": "A fast multi-threaded k-mer counter"
+	"github/RabadanLab/arcasHLA": {
+	"id": "github/RabadanLab/arcasHLA",
+	"title": "github/RabadanLab/arcasHLA",
+	"url": " https://rseng.github.io/software/repository/github/RabadanLab/arcasHLA",
+	"content": "Fast and accurate in silico inference of HLA genotypes from RNA-seq"
 	},
-	"github/gmarcais/Quorum": {
-	"id": "github/gmarcais/Quorum",
-	"title": "github/gmarcais/Quorum",
-	"url": " https://rseng.github.io/software/repository/github/gmarcais/Quorum",
-	"content": "QUality Optimized Reads from the University of Maryland"
+	"github/odelaneau/shapeit4": {
+	"id": "github/odelaneau/shapeit4",
+	"title": "github/odelaneau/shapeit4",
+	"url": " https://rseng.github.io/software/repository/github/odelaneau/shapeit4",
+	"content": "Segmented HAPlotype Estimation and Imputation Tool"
 	},
-	"github/XGI-MSU/PyIMRPhenomD": {
-	"id": "github/XGI-MSU/PyIMRPhenomD",
-	"title": "github/XGI-MSU/PyIMRPhenomD",
-	"url": " https://rseng.github.io/software/repository/github/XGI-MSU/PyIMRPhenomD",
-	"content": "None"
+	"github/odelaneau/shapeit5": {
+	"id": "github/odelaneau/shapeit5",
+	"title": "github/odelaneau/shapeit5",
+	"url": " https://rseng.github.io/software/repository/github/odelaneau/shapeit5",
+	"content": "Segmented HAPlotype Estimation and Imputation Tool"
 	},
-	"github/XGI-MSU/WDMWaveletTransforms": {
-	"id": "github/XGI-MSU/WDMWaveletTransforms",
-	"title": "github/XGI-MSU/WDMWaveletTransforms",
-	"url": " https://rseng.github.io/software/repository/github/XGI-MSU/WDMWaveletTransforms",
-	"content": "None"
+	"github/odelaneau/GLIMPSE": {
+	"id": "github/odelaneau/GLIMPSE",
+	"title": "github/odelaneau/GLIMPSE",
+	"url": " https://rseng.github.io/software/repository/github/odelaneau/GLIMPSE",
+	"content": "Low Coverage Calling of Genotypes"
 	},
-	"github/pepamengual/UEP": {
-	"id": "github/pepamengual/UEP",
-	"title": "github/pepamengual/UEP",
-	"url": " https://rseng.github.io/software/repository/github/pepamengual/UEP",
-	"content": "None"
+	"github/Qiskit/qiskit-experiments": {
+	"id": "github/Qiskit/qiskit-experiments",
+	"title": "github/Qiskit/qiskit-experiments",
+	"url": " https://rseng.github.io/software/repository/github/Qiskit/qiskit-experiments",
+	"content": "Qiskit Experiments"
 	},
-	"github/danielemichilli/SpS": {
-	"id": "github/danielemichilli/SpS",
-	"title": "github/danielemichilli/SpS",
-	"url": " https://rseng.github.io/software/repository/github/danielemichilli/SpS",
-	"content": "Single-pulse Searcher"
+	"github/Qiskit/rustworkx": {
+	"id": "github/Qiskit/rustworkx",
+	"title": "github/Qiskit/rustworkx",
+	"url": " https://rseng.github.io/software/repository/github/Qiskit/rustworkx",
+	"content": "A high performance Python graph library implemented in Rust."
 	},
-	"github/danielemichilli/DM_phase": {
-	"id": "github/danielemichilli/DM_phase",
-	"title": "github/danielemichilli/DM_phase",
-	"url": " https://rseng.github.io/software/repository/github/danielemichilli/DM_phase",
-	"content": "Tool to calculate the best dispersion measure for a burst using phase information."
+	"github/trinityrnaseq/wiki": {
+	"id": "github/trinityrnaseq/wiki",
+	"title": "github/trinityrnaseq/wiki",
+	"url": " https://rseng.github.io/software/repository/github/trinityrnaseq/wiki",
+	"content": "a software package comprised of three independent software modules (Inchworm, Chrysalis, and Butterfly) for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data."
 	},
-	"github/yuhaoran/CUBE": {
-	"id": "github/yuhaoran/CUBE",
-	"title": "github/yuhaoran/CUBE",
-	"url": " https://rseng.github.io/software/repository/github/yuhaoran/CUBE",
-	"content": "Cosmological N-body simulation code"
+	"github/PedroBarbosa/VETA": {
+	"id": "github/PedroBarbosa/VETA",
+	"title": "github/PedroBarbosa/VETA",
+	"url": " https://rseng.github.io/software/repository/github/PedroBarbosa/VETA",
+	"content": "VETA - A simple tool do evaluate variant predictors"
 	},
-	"github/multiply-org/sar-pre-processing": {
-	"id": "github/multiply-org/sar-pre-processing",
-	"title": "github/multiply-org/sar-pre-processing",
-	"url": " https://rseng.github.io/software/repository/github/multiply-org/sar-pre-processing",
-	"content": "This is the MULTIPLY repository containing the functionality for SAR pre processing."
+	"github/TRASAL/psrdada-python": {
+	"id": "github/TRASAL/psrdada-python",
+	"title": "github/TRASAL/psrdada-python",
+	"url": " https://rseng.github.io/software/repository/github/TRASAL/psrdada-python",
+	"content": "Python bindings to the PSRDada ringbuffer implementation"
 	},
-	"github/mdsteiner/EFAtools": {
-	"id": "github/mdsteiner/EFAtools",
-	"title": "github/mdsteiner/EFAtools",
-	"url": " https://rseng.github.io/software/repository/github/mdsteiner/EFAtools",
-	"content": "None"
+	"github/TRASAL/AMBER": {
+	"id": "github/TRASAL/AMBER",
+	"title": "github/TRASAL/AMBER",
+	"url": " https://rseng.github.io/software/repository/github/TRASAL/AMBER",
+	"content": "A many-core transient searching pipeline, designed to search in real-time for Fast Radio Bursts."
 	},
-	"github/netrias/rnassist": {
-	"id": "github/netrias/rnassist",
-	"title": "github/netrias/rnassist",
-	"url": " https://rseng.github.io/software/repository/github/netrias/rnassist",
-	"content": "None"
+	"github/JixingGE/GGCHEMPY": {
+	"id": "github/JixingGE/GGCHEMPY",
+	"title": "github/JixingGE/GGCHEMPY",
+	"url": " https://rseng.github.io/software/repository/github/JixingGE/GGCHEMPY",
+	"content": "Gas-grain chemical code for interstellar medium in pure Python"
 	},
-	"github/jkbonfield/io_lib": {
-	"id": "github/jkbonfield/io_lib",
-	"title": "github/jkbonfield/io_lib",
-	"url": " https://rseng.github.io/software/repository/github/jkbonfield/io_lib",
-	"content": "Staden Package &#34;io_lib&#34; (sometimes referred to as libstaden-read by distributions).    This contains code for reading and writing a variety of Bioinformatics / DNA Sequence formats."
+	"github/KiranLDA/PAMLr": {
+	"id": "github/KiranLDA/PAMLr",
+	"title": "github/KiranLDA/PAMLr",
+	"url": " https://rseng.github.io/software/repository/github/KiranLDA/PAMLr",
+	"content": "Pressure, Activity, Magnetism and Light data analysis in R"
 	},
-	"github/jkbonfield/crumble": {
-	"id": "github/jkbonfield/crumble",
-	"title": "github/jkbonfield/crumble",
-	"url": " https://rseng.github.io/software/repository/github/jkbonfield/crumble",
-	"content": "controllable lossy compression of BAM/CRAM files."
+	"github/Cascella-Group-UiO/HyMD": {
+	"id": "github/Cascella-Group-UiO/HyMD",
+	"title": "github/Cascella-Group-UiO/HyMD",
+	"url": " https://rseng.github.io/software/repository/github/Cascella-Group-UiO/HyMD",
+	"content": "Massively parallel hybrid particle-field molecular dynamics in Python."
 	},
-	"github/jkbonfield/htscodecs": {
-	"id": "github/jkbonfield/htscodecs",
-	"title": "github/jkbonfield/htscodecs",
-	"url": " https://rseng.github.io/software/repository/github/jkbonfield/htscodecs",
-	"content": "Custom compression for CRAM and others."
+	"github/darrencroton/sage": {
+	"id": "github/darrencroton/sage",
+	"title": "github/darrencroton/sage",
+	"url": " https://rseng.github.io/software/repository/github/darrencroton/sage",
+	"content": "Home of the Semi-Analytic Galaxy Evolution (SAGE) galaxy formation model"
 	},
-	"github/lastz/lastz": {
-	"id": "github/lastz/lastz",
-	"title": "github/lastz/lastz",
-	"url": " https://rseng.github.io/software/repository/github/lastz/lastz",
-	"content": "Program for aligning DNA sequences, a pairwise aligner."
+	"github/lucatelli/morphen": {
+	"id": "github/lucatelli/morphen",
+	"title": "github/lucatelli/morphen",
+	"url": " https://rseng.github.io/software/repository/github/lucatelli/morphen",
+	"content": "Collection of functions for astronomical image analysis and processing. These tools involves pure python, but also are integrated with CASA (https://casa.nrao.edu/)"
 	},
-	"github/tobias-dv-lnu/s4rdm3x": {
-	"id": "github/tobias-dv-lnu/s4rdm3x",
-	"title": "github/tobias-dv-lnu/s4rdm3x",
-	"url": " https://rseng.github.io/software/repository/github/tobias-dv-lnu/s4rdm3x",
+	"github/yuansh3354/CaSee": {
+	"id": "github/yuansh3354/CaSee",
+	"title": "github/yuansh3354/CaSee",
+	"url": " https://rseng.github.io/software/repository/github/yuansh3354/CaSee",
 	"content": "None"
 	},
-	"github/lomereiter/sambamba": {
-	"id": "github/lomereiter/sambamba",
-	"title": "github/lomereiter/sambamba",
-	"url": " https://rseng.github.io/software/repository/github/lomereiter/sambamba",
-	"content": "Tools for working with SAM/BAM data"
-	},
-	"github/tlverse/hal9001": {
-	"id": "github/tlverse/hal9001",
-	"title": "github/tlverse/hal9001",
-	"url": " https://rseng.github.io/software/repository/github/tlverse/hal9001",
-	"content": "🤠 📿 The Highly Adaptive Lasso"
-	},
-	"github/CMU-SAFARI/BLEND": {
-	"id": "github/CMU-SAFARI/BLEND",
-	"title": "github/CMU-SAFARI/BLEND",
-	"url": " https://rseng.github.io/software/repository/github/CMU-SAFARI/BLEND",
-	"content": "BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGAB https://doi.org/10.1093/nargab/lqad004)"
+	"github/pachterlab/kallisto": {
+	"id": "github/pachterlab/kallisto",
+	"title": "github/pachterlab/kallisto",
+	"url": " https://rseng.github.io/software/repository/github/pachterlab/kallisto",
+	"content": "Near-optimal RNA-Seq quantification"
 	},
-	"github/Qile0317/APackOfTheClones": {
-	"id": "github/Qile0317/APackOfTheClones",
-	"title": "github/Qile0317/APackOfTheClones",
-	"url": " https://rseng.github.io/software/repository/github/Qile0317/APackOfTheClones",
-	"content": "Visualize clonal expansion via circle-packing. &#39;APackOfTheClones&#39; extends &#39;scRepertoire&#39; to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles."
+	"github/dankelley/oce": {
+	"id": "github/dankelley/oce",
+	"title": "github/dankelley/oce",
+	"url": " https://rseng.github.io/software/repository/github/dankelley/oce",
+	"content": "R package for oceanographic processing"
 	},
-	"github/PGB-LIV/MHCVision": {
-	"id": "github/PGB-LIV/MHCVision",
-	"title": "github/PGB-LIV/MHCVision",
-	"url": " https://rseng.github.io/software/repository/github/PGB-LIV/MHCVision",
-	"content": "FDR/PEP estimation for MHC-peptide binding prediction"
+	"github/ziyewang/MetaBinner": {
+	"id": "github/ziyewang/MetaBinner",
+	"title": "github/ziyewang/MetaBinner",
+	"url": " https://rseng.github.io/software/repository/github/ziyewang/MetaBinner",
+	"content": "None"
 	},
-	"github/NASA-Planetary-Science/Pade-disk-code": {
-	"id": "github/NASA-Planetary-Science/Pade-disk-code",
-	"title": "github/NASA-Planetary-Science/Pade-disk-code",
-	"url": " https://rseng.github.io/software/repository/github/NASA-Planetary-Science/Pade-disk-code",
-	"content": "Fortran90 code to simulate protoplanetary disk turbulence using Pade/compact differencing."
+	"github/ziyewang/ARG_SHINE": {
+	"id": "github/ziyewang/ARG_SHINE",
+	"title": "github/ziyewang/ARG_SHINE",
+	"url": " https://rseng.github.io/software/repository/github/ziyewang/ARG_SHINE",
+	"content": "None"
 	},
-	"github/radis/radis": {
-	"id": "github/radis/radis",
-	"title": "github/radis/radis",
-	"url": " https://rseng.github.io/software/repository/github/radis/radis",
-	"content": "🌱 A fast line-by-line code for high-resolution infrared molecular spectra"
+	"github/JustinYKC/FEPOPS": {
+	"id": "github/JustinYKC/FEPOPS",
+	"title": "github/JustinYKC/FEPOPS",
+	"url": " https://rseng.github.io/software/repository/github/JustinYKC/FEPOPS",
+	"content": "Python implementation of the FEPOPS molecular descriptors"
 	},
-	"github/TommasoRonconi/scampy": {
-	"id": "github/TommasoRonconi/scampy",
-	"title": "github/TommasoRonconi/scampy",
-	"url": " https://rseng.github.io/software/repository/github/TommasoRonconi/scampy",
-	"content": "A Python API for Sub-halo Clustering and Abundance Matching"
+	"github/johnschwenck/bp": {
+	"id": "github/johnschwenck/bp",
+	"title": "github/johnschwenck/bp",
+	"url": " https://rseng.github.io/software/repository/github/johnschwenck/bp",
+	"content": "An R package for analyzing blood pressure data"
 	},
-	"github/smandal97/Sprout": {
-	"id": "github/smandal97/Sprout",
-	"title": "github/smandal97/Sprout",
-	"url": " https://rseng.github.io/software/repository/github/smandal97/Sprout",
-	"content": "Sprout is a finite volume hydro code based on the moving mesh approach. It uses a simple expanding Cartesian grid to track outflows for several orders of magnitudes in expansion."
+	"github/kimberg/voxbo": {
+	"id": "github/kimberg/voxbo",
+	"title": "github/kimberg/voxbo",
+	"url": " https://rseng.github.io/software/repository/github/kimberg/voxbo",
+	"content": "free software for brain image analysis"
 	},
-	"github/JuliaArrays/LazyArrays.jl": {
-	"id": "github/JuliaArrays/LazyArrays.jl",
-	"title": "github/JuliaArrays/LazyArrays.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaArrays/LazyArrays.jl",
-	"content": "Lazy arrays and linear algebra in Julia"
+	"github/galsci/pysm": {
+	"id": "github/galsci/pysm",
+	"title": "github/galsci/pysm",
+	"url": " https://rseng.github.io/software/repository/github/galsci/pysm",
+	"content": "PySM 3: Sky emission simulations for Cosmic Microwave Background experiments"
 	},
-	"github/JuliaArrays/BlockArrays.jl": {
-	"id": "github/JuliaArrays/BlockArrays.jl",
-	"title": "github/JuliaArrays/BlockArrays.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaArrays/BlockArrays.jl",
-	"content": "BlockArrays for Julia"
+	"github/PaulKuin/uvotpy": {
+	"id": "github/PaulKuin/uvotpy",
+	"title": "github/PaulKuin/uvotpy",
+	"url": " https://rseng.github.io/software/repository/github/PaulKuin/uvotpy",
+	"content": "Swift UVOT grisms - spectral extraction"
 	},
-	"github/JuliaArrays/InfiniteArrays.jl": {
-	"id": "github/JuliaArrays/InfiniteArrays.jl",
-	"title": "github/JuliaArrays/InfiniteArrays.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaArrays/InfiniteArrays.jl",
-	"content": "A Julia package for representing infinite-dimensional arrays"
+	"github/RafaelSdeSouza/qrpca": {
+	"id": "github/RafaelSdeSouza/qrpca",
+	"title": "github/RafaelSdeSouza/qrpca",
+	"url": " https://rseng.github.io/software/repository/github/RafaelSdeSouza/qrpca",
+	"content": "QR based Principal Components Analysis"
 	},
-	"github/jgieseler/solarmach": {
-	"id": "github/jgieseler/solarmach",
-	"title": "github/jgieseler/solarmach",
-	"url": " https://rseng.github.io/software/repository/github/jgieseler/solarmach",
-	"content": "Python package of the multi-spacecraft longitudinal configuration plotter Solar-MACH"
+	"github/dunhamlab/PacRAT": {
+	"id": "github/dunhamlab/PacRAT",
+	"title": "github/dunhamlab/PacRAT",
+	"url": " https://rseng.github.io/software/repository/github/dunhamlab/PacRAT",
+	"content": "Improving long-read barcode-variant mapping using multiple sequence alignment. "
 	},
-	"github/openmm/openmm": {
-	"id": "github/openmm/openmm",
-	"title": "github/openmm/openmm",
-	"url": " https://rseng.github.io/software/repository/github/openmm/openmm",
-	"content": "OpenMM is a toolkit for molecular simulation using high performance GPU code. "
+	"github/carpenterphysics/DarkFlux": {
+	"id": "github/carpenterphysics/DarkFlux",
+	"title": "github/carpenterphysics/DarkFlux",
+	"url": " https://rseng.github.io/software/repository/github/carpenterphysics/DarkFlux",
+	"content": "DarkFlux is a tool to compute Dark Matter the Dark Matter annihilation spectrum in Next Generation Dark Matter Models"
 	},
-	"github/egjergo/galcem": {
-	"id": "github/egjergo/galcem",
-	"title": "github/egjergo/galcem",
-	"url": " https://rseng.github.io/software/repository/github/egjergo/galcem",
-	"content": "Please email us to get a JupyterHub account, or for any other queries"
+	"github/GreiffLab/immuneREF": {
+	"id": "github/GreiffLab/immuneREF",
+	"title": "github/GreiffLab/immuneREF",
+	"url": " https://rseng.github.io/software/repository/github/GreiffLab/immuneREF",
+	"content": "None"
 	},
-	"github/rcarragh/c212": {
-	"id": "github/rcarragh/c212",
-	"title": "github/rcarragh/c212",
-	"url": " https://rseng.github.io/software/repository/github/rcarragh/c212",
-	"content": "Methods for detecting safety signals in clinical trials using groupings of adverse events by body-system or system organ class."
+	"github/Zafiirah13/meercrab": {
+	"id": "github/Zafiirah13/meercrab",
+	"title": "github/Zafiirah13/meercrab",
+	"url": " https://rseng.github.io/software/repository/github/Zafiirah13/meercrab",
+	"content": "MeerLICHT Classification of Real And Bogus using deep learning"
 	},
-	"github/duetosymmetry/qnm": {
-	"id": "github/duetosymmetry/qnm",
-	"title": "github/duetosymmetry/qnm",
-	"url": " https://rseng.github.io/software/repository/github/duetosymmetry/qnm",
-	"content": "Python package for computing Kerr quasinormal mode frequencies, separation constants, and spherical-spheroidal mixing coefficients"
+	"github/wadpac/GGIR": {
+	"id": "github/wadpac/GGIR",
+	"title": "github/wadpac/GGIR",
+	"url": " https://rseng.github.io/software/repository/github/wadpac/GGIR",
+	"content": "Code corresponding to R package GGIR"
 	},
-	"github/dankelley/oce": {
-	"id": "github/dankelley/oce",
-	"title": "github/dankelley/oce",
-	"url": " https://rseng.github.io/software/repository/github/dankelley/oce",
-	"content": "R package for oceanographic processing"
+	"github/narunlifescience/runcircos-gui": {
+	"id": "github/narunlifescience/runcircos-gui",
+	"title": "github/narunlifescience/runcircos-gui",
+	"url": " https://rseng.github.io/software/repository/github/narunlifescience/runcircos-gui",
+	"content": ":radio_button: GUI tool to run circos"
 	},
-	"github/ABSESpy/ABSESpy": {
-	"id": "github/ABSESpy/ABSESpy",
-	"title": "github/ABSESpy/ABSESpy",
-	"url": " https://rseng.github.io/software/repository/github/ABSESpy/ABSESpy",
-	"content": "An Agent-based Social-ecological System python framework for coupling human-nature researches. "
+	"github/KBNLresearch/ochre": {
+	"id": "github/KBNLresearch/ochre",
+	"title": "github/KBNLresearch/ochre",
+	"url": " https://rseng.github.io/software/repository/github/KBNLresearch/ochre",
+	"content": "Toolbox for OCR post-correction"
 	},
-	"github/olivecha/guitarsounds": {
-	"id": "github/olivecha/guitarsounds",
-	"title": "github/olivecha/guitarsounds",
-	"url": " https://rseng.github.io/software/repository/github/olivecha/guitarsounds",
-	"content": "python library to analyse guitar sounds"
+	"github/CosmoStat/score": {
+	"id": "github/CosmoStat/score",
+	"title": "github/CosmoStat/score",
+	"url": " https://rseng.github.io/software/repository/github/CosmoStat/score",
+	"content": "Shape COnstraint REstoration"
 	},
-	"github/zachetienne/nrpytutorial": {
-	"id": "github/zachetienne/nrpytutorial",
-	"title": "github/zachetienne/nrpytutorial",
-	"url": " https://rseng.github.io/software/repository/github/zachetienne/nrpytutorial",
-	"content": "NRPy+, BlackHoles@Home, SENRv2, and the NRPy+ Jupyter Tutorial: Python-Based Code Generation for Numerical Relativity... and Beyond!"
+	"github/CosmoStat/mccd": {
+	"id": "github/CosmoStat/mccd",
+	"title": "github/CosmoStat/mccd",
+	"url": " https://rseng.github.io/software/repository/github/CosmoStat/mccd",
+	"content": "Multi-CCD data-driven PSF modelling"
 	},
-	"github/hposborn/MonoTools": {
-	"id": "github/hposborn/MonoTools",
-	"title": "github/hposborn/MonoTools",
-	"url": " https://rseng.github.io/software/repository/github/hposborn/MonoTools",
-	"content": "A package for detecting, vetting, and modelling transiting exoplanets on uncertain periods"
+	"github/CosmoStat/shapepipe": {
+	"id": "github/CosmoStat/shapepipe",
+	"title": "github/CosmoStat/shapepipe",
+	"url": " https://rseng.github.io/software/repository/github/CosmoStat/shapepipe",
+	"content": "Shape Measurement Pipeline"
 	},
-	"github/nebblu/ReACT": {
-	"id": "github/nebblu/ReACT",
-	"title": "github/nebblu/ReACT",
-	"url": " https://rseng.github.io/software/repository/github/nebblu/ReACT",
-	"content": "ReACT public repo"
+	"github/CosmoStat/Glimpse": {
+	"id": "github/CosmoStat/Glimpse",
+	"title": "github/CosmoStat/Glimpse",
+	"url": " https://rseng.github.io/software/repository/github/CosmoStat/Glimpse",
+	"content": "Sparsity based weak lensing mass-mapping tool"
 	},
-	"github/U-Alberta/ADaPT-ML": {
-	"id": "github/U-Alberta/ADaPT-ML",
-	"title": "github/U-Alberta/ADaPT-ML",
-	"url": " https://rseng.github.io/software/repository/github/U-Alberta/ADaPT-ML",
-	"content": "None"
+	"github/pysersic/pysersic": {
+	"id": "github/pysersic/pysersic",
+	"title": "github/pysersic/pysersic",
+	"url": " https://rseng.github.io/software/repository/github/pysersic/pysersic",
+	"content": "Bayesian fitting of Sersic profiles to galaxy images accelerated with jax"
 	},
-	"github/xfengnefx/hifiasm-meta": {
-	"id": "github/xfengnefx/hifiasm-meta",
-	"title": "github/xfengnefx/hifiasm-meta",
-	"url": " https://rseng.github.io/software/repository/github/xfengnefx/hifiasm-meta",
-	"content": "hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads."
+	"github/EliseJ/superabc": {
+	"id": "github/EliseJ/superabc",
+	"title": "github/EliseJ/superabc",
+	"url": " https://rseng.github.io/software/repository/github/EliseJ/superabc",
+	"content": "superABC: cosmological constraints from SN light curves using Approximate Bayesian Computation"
 	},
-	"github/Computational-NeuroGenetics/deMeta-beta": {
-	"id": "github/Computational-NeuroGenetics/deMeta-beta",
-	"title": "github/Computational-NeuroGenetics/deMeta-beta",
-	"url": " https://rseng.github.io/software/repository/github/Computational-NeuroGenetics/deMeta-beta",
-	"content": "None"
+	"github/EliseJ/astroABC": {
+	"id": "github/EliseJ/astroABC",
+	"title": "github/EliseJ/astroABC",
+	"url": " https://rseng.github.io/software/repository/github/EliseJ/astroABC",
+	"content": "Approximate Bayesian Computation Sequential Monte Carlo sampler for parameter estimation."
 	},
-	"github/dfki-ric/movement_primitives": {
-	"id": "github/dfki-ric/movement_primitives",
-	"title": "github/dfki-ric/movement_primitives",
-	"url": " https://rseng.github.io/software/repository/github/dfki-ric/movement_primitives",
-	"content": "Dynamical movement primitives (DMPs), probabilistic movement primitives (ProMPs), and spatially coupled bimanual DMPs for imitation learning."
+	"github/LindleyLentati/Cobra": {
+	"id": "github/LindleyLentati/Cobra",
+	"title": "github/LindleyLentati/Cobra",
+	"url": " https://rseng.github.io/software/repository/github/LindleyLentati/Cobra",
+	"content": "Bayesian Pulsar Searching"
 	},
-	"github/leishenggit/CircleBase": {
-	"id": "github/leishenggit/CircleBase",
-	"title": "github/leishenggit/CircleBase",
-	"url": " https://rseng.github.io/software/repository/github/leishenggit/CircleBase",
-	"content": "An integrated resource and analysis platform for human eccDNAs"
+	"github/phylo42/EPIK": {
+	"id": "github/phylo42/EPIK",
+	"title": "github/phylo42/EPIK",
+	"url": " https://rseng.github.io/software/repository/github/phylo42/EPIK",
+	"content": "Alignment-free phylogenetic placement"
 	},
-	"github/JuliaQX/QXTools.jl": {
-	"id": "github/JuliaQX/QXTools.jl",
-	"title": "github/JuliaQX/QXTools.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaQX/QXTools.jl",
-	"content": "Julia package for quantum circuit simulation using tensor networks"
+	"github/phylo42/RAPPAS": {
+	"id": "github/phylo42/RAPPAS",
+	"title": "github/phylo42/RAPPAS",
+	"url": " https://rseng.github.io/software/repository/github/phylo42/RAPPAS",
+	"content": "Rapid, Alignment-free, Phylogenetic Placement  via Ancestral Sequences"
 	},
-	"github/benedictpaten/marginPhase": {
-	"id": "github/benedictpaten/marginPhase",
-	"title": "github/benedictpaten/marginPhase",
-	"url": " https://rseng.github.io/software/repository/github/benedictpaten/marginPhase",
-	"content": "simultaneous haplotyping and genotyping"
+	"github/aothmane-control/Algebraic-differentiators": {
+	"id": "github/aothmane-control/Algebraic-differentiators",
+	"title": "github/aothmane-control/Algebraic-differentiators",
+	"url": " https://rseng.github.io/software/repository/github/aothmane-control/Algebraic-differentiators",
+	"content": "A Python class implementing all necessary tools for the design, analysis, and discretization of algebraic differentiators. An interface to Matlab is also provided."
 	},
-	"github/castro-gzlz/mr-plotter": {
-	"id": "github/castro-gzlz/mr-plotter",
-	"title": "github/castro-gzlz/mr-plotter",
-	"url": " https://rseng.github.io/software/repository/github/castro-gzlz/mr-plotter",
-	"content": "Mass-Radius diagrams with a wide range of models and relationships"
+	"github/icredd-cheminfo/CGRdb2": {
+	"id": "github/icredd-cheminfo/CGRdb2",
+	"title": "github/icredd-cheminfo/CGRdb2",
+	"url": " https://rseng.github.io/software/repository/github/icredd-cheminfo/CGRdb2",
+	"content": "None"
 	},
-	"github/naonori/hitomi": {
-	"id": "github/naonori/hitomi",
-	"title": "github/naonori/hitomi",
-	"url": " https://rseng.github.io/software/repository/github/naonori/hitomi",
-	"content": "Public repository for the Hitomi Code"
+	"github/sunpy/sunpy": {
+	"id": "github/sunpy/sunpy",
+	"title": "github/sunpy/sunpy",
+	"url": " https://rseng.github.io/software/repository/github/sunpy/sunpy",
+	"content": "SunPy - Python for Solar Physics"
 	},
-	"github/tlambert03/pycudadecon": {
-	"id": "github/tlambert03/pycudadecon",
-	"title": "github/tlambert03/pycudadecon",
-	"url": " https://rseng.github.io/software/repository/github/tlambert03/pycudadecon",
-	"content": "Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy"
+	"github/sunpy/ndcube": {
+	"id": "github/sunpy/ndcube",
+	"title": "github/sunpy/ndcube",
+	"url": " https://rseng.github.io/software/repository/github/sunpy/ndcube",
+	"content": "A base package for multi-dimensional contiguous and non-contiguous coordinate-aware arrays. Maintainers: @danryanirish &amp; @Cadair"
 	},
-	"github/ejhigson/nestcheck": {
-	"id": "github/ejhigson/nestcheck",
-	"title": "github/ejhigson/nestcheck",
-	"url": " https://rseng.github.io/software/repository/github/ejhigson/nestcheck",
-	"content": "Error analysis, diagnostic tests and plots for nested sampling calculations."
+	"github/samsledje/ConPLex_dev": {
+	"id": "github/samsledje/ConPLex_dev",
+	"title": "github/samsledje/ConPLex_dev",
+	"url": " https://rseng.github.io/software/repository/github/samsledje/ConPLex_dev",
+	"content": "None"
 	},
-	"github/ejhigson/dyPolyChord": {
-	"id": "github/ejhigson/dyPolyChord",
-	"title": "github/ejhigson/dyPolyChord",
-	"url": " https://rseng.github.io/software/repository/github/ejhigson/dyPolyChord",
-	"content": "Super fast dynamic nested sampling with PolyChord (Python, C++ and Fortran likelihoods)."
+	"github/JuliaOcean/AIBECS.jl": {
+	"id": "github/JuliaOcean/AIBECS.jl",
+	"title": "github/JuliaOcean/AIBECS.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaOcean/AIBECS.jl",
+	"content": "The ideal tool for exploring global marine biogeochemical cycles."
 	},
-	"github/ejhigson/perfectns": {
-	"id": "github/ejhigson/perfectns",
-	"title": "github/ejhigson/perfectns",
-	"url": " https://rseng.github.io/software/repository/github/ejhigson/perfectns",
-	"content": "&#34;Perfect&#34; dynamic and standard nested sampling for spherically symmetric likelihoods and priors."
+	"github/JuliaOcean/PlanktonIndividuals.jl": {
+	"id": "github/JuliaOcean/PlanktonIndividuals.jl",
+	"title": "github/JuliaOcean/PlanktonIndividuals.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaOcean/PlanktonIndividuals.jl",
+	"content": "This package simulates the behaviors of an ensemble of phytoplankton individuals."
 	},
-	"github/cdfortenbach/JET": {
-	"id": "github/cdfortenbach/JET",
-	"title": "github/cdfortenbach/JET",
-	"url": " https://rseng.github.io/software/repository/github/cdfortenbach/JET",
-	"content": "Computer tool that can be used to optimize lists of exoplanet targets for atmospheric characterization by JWST."
+	"github/NASA-Planetary-Science/Pade-disk-code": {
+	"id": "github/NASA-Planetary-Science/Pade-disk-code",
+	"title": "github/NASA-Planetary-Science/Pade-disk-code",
+	"url": " https://rseng.github.io/software/repository/github/NASA-Planetary-Science/Pade-disk-code",
+	"content": "Fortran90 code to simulate protoplanetary disk turbulence using Pade/compact differencing."
 	},
-	"github/juliotux/astropop": {
-	"id": "github/juliotux/astropop",
-	"title": "github/juliotux/astropop",
-	"url": " https://rseng.github.io/software/repository/github/juliotux/astropop",
-	"content": "The (non) famous ASTROnomical POlarimetry and Photometry pipeline"
+	"github/IftachSadeh/ANNZ": {
+	"id": "github/IftachSadeh/ANNZ",
+	"title": "github/IftachSadeh/ANNZ",
+	"url": " https://rseng.github.io/software/repository/github/IftachSadeh/ANNZ",
+	"content": "Machine learning methods for astrophysics (photometric redshift and PDF estimation, star/galaxy classification etc.)"
 	},
-	"github/JungleComputing/rocket": {
-	"id": "github/JungleComputing/rocket",
-	"title": "github/JungleComputing/rocket",
-	"url": " https://rseng.github.io/software/repository/github/JungleComputing/rocket",
-	"content": "Rocket is a Constellation-based runtime system for efficient execution of all-pair compute problem on distributed heterogeneous platforms"
+	"github/euroargodev/argopy": {
+	"id": "github/euroargodev/argopy",
+	"title": "github/euroargodev/argopy",
+	"url": " https://rseng.github.io/software/repository/github/euroargodev/argopy",
+	"content": "A python library for Argo data beginners and experts"
 	},
-	"github/egonw/bacting": {
-	"id": "github/egonw/bacting",
-	"title": "github/egonw/bacting",
-	"url": " https://rseng.github.io/software/repository/github/egonw/bacting",
-	"content": "Bacting := acting as the Bioclipse TNG"
+	"github/matteolucchini1/BHJet": {
+	"id": "github/matteolucchini1/BHJet",
+	"title": "github/matteolucchini1/BHJet",
+	"url": " https://rseng.github.io/software/repository/github/matteolucchini1/BHJet",
+	"content": "Semi analytical black hole jet model, jetset group, Amsterdam"
 	},
-	"github/VarStarDetect/varstardetect": {
-	"id": "github/VarStarDetect/varstardetect",
-	"title": "github/VarStarDetect/varstardetect",
-	"url": " https://rseng.github.io/software/repository/github/VarStarDetect/varstardetect",
-	"content": "None"
+	"github/AndreinaCastillo/Genie_manuscript_data_analysis": {
+	"id": "github/AndreinaCastillo/Genie_manuscript_data_analysis",
+	"title": "github/AndreinaCastillo/Genie_manuscript_data_analysis",
+	"url": " https://rseng.github.io/software/repository/github/AndreinaCastillo/Genie_manuscript_data_analysis",
+	"content": "Repository containing R code for the analysis of student pre- and post-recitation responses "
 	},
-	"github/Punzo/SlicerAstro": {
-	"id": "github/Punzo/SlicerAstro",
-	"title": "github/Punzo/SlicerAstro",
-	"url": " https://rseng.github.io/software/repository/github/Punzo/SlicerAstro",
-	"content": "Astronomy (HI) extension for 3DSlicer (https://www.slicer.org/)"
+	"github/MaayanLab/signature-commons-ui": {
+	"id": "github/MaayanLab/signature-commons-ui",
+	"title": "github/MaayanLab/signature-commons-ui",
+	"url": " https://rseng.github.io/software/repository/github/MaayanLab/signature-commons-ui",
+	"content": "A front-end UI for demoing API integration"
 	},
-	"github/Junwu302/HiFun": {
-	"id": "github/Junwu302/HiFun",
-	"title": "github/Junwu302/HiFun",
-	"url": " https://rseng.github.io/software/repository/github/Junwu302/HiFun",
-	"content": "Homology Independent Protein Function prediction on Protein-Language Self-Attention Model"
+	"github/atmos-cloud-sim-uj/PySDM": {
+	"id": "github/atmos-cloud-sim-uj/PySDM",
+	"title": "github/atmos-cloud-sim-uj/PySDM",
+	"url": " https://rseng.github.io/software/repository/github/atmos-cloud-sim-uj/PySDM",
+	"content": "Pythonic particle-based (super-droplet) warm-rain/aqueous-chemistry cloud microphysics package with box, parcel &amp; 1D/2D prescribed-flow examples in Python, Julia and Matlab"
 	},
-	"github/adrijd/beamconv": {
-	"id": "github/adrijd/beamconv",
-	"title": "github/adrijd/beamconv",
-	"url": " https://rseng.github.io/software/repository/github/adrijd/beamconv",
-	"content": "Code library to simulate CMB detector data with realistic optics-related contributions"
+	"github/atmos-cloud-sim-uj/PyMPDATA": {
+	"id": "github/atmos-cloud-sim-uj/PyMPDATA",
+	"title": "github/atmos-cloud-sim-uj/PyMPDATA",
+	"url": " https://rseng.github.io/software/repository/github/atmos-cloud-sim-uj/PyMPDATA",
+	"content": "Numba-accelerated Pythonic implementation of MPDATA with examples in Python, Julia and Matlab"
 	},
-	"github/dmnfarrell/epitopepredict": {
-	"id": "github/dmnfarrell/epitopepredict",
-	"title": "github/dmnfarrell/epitopepredict",
-	"url": " https://rseng.github.io/software/repository/github/dmnfarrell/epitopepredict",
-	"content": "Python package  and command line tool for epitope prediction"
+	"github/nbellomo/Multi_CLASS": {
+	"id": "github/nbellomo/Multi_CLASS",
+	"title": "github/nbellomo/Multi_CLASS",
+	"url": " https://rseng.github.io/software/repository/github/nbellomo/Multi_CLASS",
+	"content": "Public repository of the Multi_CLASS code"
 	},
-	"github/dmnfarrell/snpgenie": {
-	"id": "github/dmnfarrell/snpgenie",
-	"title": "github/dmnfarrell/snpgenie",
-	"url": " https://rseng.github.io/software/repository/github/dmnfarrell/snpgenie",
-	"content": "command line and desktop tool for microbial variant calling"
+	"github/Pometry/Raphtory": {
+	"id": "github/Pometry/Raphtory",
+	"title": "github/Pometry/Raphtory",
+	"url": " https://rseng.github.io/software/repository/github/Pometry/Raphtory",
+	"content": "Blazingly fast, vectorised, parallel, and scalable temporal graph engine for Rust, Python and JavaScript"
 	},
-	"github/SWE-UniStuttgart/Qlunc": {
-	"id": "github/SWE-UniStuttgart/Qlunc",
-	"title": "github/SWE-UniStuttgart/Qlunc",
-	"url": " https://rseng.github.io/software/repository/github/SWE-UniStuttgart/Qlunc",
-	"content": "A numerical framework to estimate hardware and data processing uncertainties of a lidar device"
+	"github/revoltek/losoto": {
+	"id": "github/revoltek/losoto",
+	"title": "github/revoltek/losoto",
+	"url": " https://rseng.github.io/software/repository/github/revoltek/losoto",
+	"content": "LOFAR solutions tool"
 	},
-	"github/hsergi/Roman_Coronagraph_ETC": {
-	"id": "github/hsergi/Roman_Coronagraph_ETC",
-	"title": "github/hsergi/Roman_Coronagraph_ETC",
-	"url": " https://rseng.github.io/software/repository/github/hsergi/Roman_Coronagraph_ETC",
-	"content": "Exposure Time Calculator for the Roman Coronagraph Instrument"
+	"github/spacetx/starfish": {
+	"id": "github/spacetx/starfish",
+	"title": "github/spacetx/starfish",
+	"url": " https://rseng.github.io/software/repository/github/spacetx/starfish",
+	"content": "starfish: unified pipelines for image-based transcriptomics"
 	},
 	"github/morriscb/The-wiZZ": {
 	"id": "github/morriscb/The-wiZZ",
@@ -4023,1805 +3141,1853 @@
 	"url": " https://rseng.github.io/software/repository/github/morriscb/The-wiZZ",
 	"content": "A clustering redshift estimation code for us folks. For information on the method see Schmidt et al. 2013, Menard et al. 2013, and Rahman et al. 2015, 2016b. Details on this implementation can be found in Morrison et al. 2017"
 	},
-	"github/frarei312/ExceS-A-An-Exon-Centric-Split-Aligner": {
-	"id": "github/frarei312/ExceS-A-An-Exon-Centric-Split-Aligner",
-	"title": "github/frarei312/ExceS-A-An-Exon-Centric-Split-Aligner",
-	"url": " https://rseng.github.io/software/repository/github/frarei312/ExceS-A-An-Exon-Centric-Split-Aligner",
+	"github/csuhjhjhj/GCNCMI": {
+	"id": "github/csuhjhjhj/GCNCMI",
+	"title": "github/csuhjhjhj/GCNCMI",
+	"url": " https://rseng.github.io/software/repository/github/csuhjhjhj/GCNCMI",
+	"content": "CircRNA-miRNA interaction Prediction Based on Graph Neural Network"
+	},
+	"github/ArkajyotiSaha/RandomForestsGLS": {
+	"id": "github/ArkajyotiSaha/RandomForestsGLS",
+	"title": "github/ArkajyotiSaha/RandomForestsGLS",
+	"url": " https://rseng.github.io/software/repository/github/ArkajyotiSaha/RandomForestsGLS",
 	"content": "None"
 	},
-	"github/sharmalab/eaglescope": {
-	"id": "github/sharmalab/eaglescope",
-	"title": "github/sharmalab/eaglescope",
-	"url": " https://rseng.github.io/software/repository/github/sharmalab/eaglescope",
-	"content": "Hierarchical and Cohort Visualization"
+	"github/NCAR/NCAR-Classic-Libraries-for-Geophysics": {
+	"id": "github/NCAR/NCAR-Classic-Libraries-for-Geophysics",
+	"title": "github/NCAR/NCAR-Classic-Libraries-for-Geophysics",
+	"url": " https://rseng.github.io/software/repository/github/NCAR/NCAR-Classic-Libraries-for-Geophysics",
+	"content": "None"
 	},
-	"github/synchrofit/synchrofit": {
-	"id": "github/synchrofit/synchrofit",
-	"title": "github/synchrofit/synchrofit",
-	"url": " https://rseng.github.io/software/repository/github/synchrofit/synchrofit",
-	"content": "Code for modelling a radio spectrum using the JP, KP or CI models. "
+	"github/EskelandLab/ShinyArchRUiO": {
+	"id": "github/EskelandLab/ShinyArchRUiO",
+	"title": "github/EskelandLab/ShinyArchRUiO",
+	"url": " https://rseng.github.io/software/repository/github/EskelandLab/ShinyArchRUiO",
+	"content": "None"
 	},
-	"github/UoMMIB/TFBMiner": {
-	"id": "github/UoMMIB/TFBMiner",
-	"title": "github/UoMMIB/TFBMiner",
-	"url": " https://rseng.github.io/software/repository/github/UoMMIB/TFBMiner",
-	"content": "TFBMiner is a data acquisition and analysis pipeline for the rapid identification of putative transcription factor-based biosensors."
+	"github/leesulab/arcMS": {
+	"id": "github/leesulab/arcMS",
+	"title": "github/leesulab/arcMS",
+	"url": " https://rseng.github.io/software/repository/github/leesulab/arcMS",
+	"content": "Mass spectrometry data converter from UNIFI to Parquet and HDF5 formats"
 	},
-	"github/thomgrand/fim-python": {
-	"id": "github/thomgrand/fim-python",
-	"title": "github/thomgrand/fim-python",
-	"url": " https://rseng.github.io/software/repository/github/thomgrand/fim-python",
-	"content": "This repository implements the Fast Iterative Method (FIM) for use in python"
+	"github/ParisAstronomicalDataCentre/OPUS": {
+	"id": "github/ParisAstronomicalDataCentre/OPUS",
+	"title": "github/ParisAstronomicalDataCentre/OPUS",
+	"url": " https://rseng.github.io/software/repository/github/ParisAstronomicalDataCentre/OPUS",
+	"content": "Observatoire de Paris UWS System (OPUS):  UWS web client/server developped at the Paris Astronomical Data Centre."
 	},
-	"github/phenology/cgc": {
-	"id": "github/phenology/cgc",
-	"title": "github/phenology/cgc",
-	"url": " https://rseng.github.io/software/repository/github/phenology/cgc",
-	"content": "A clustering tool for geospatial applications"
+	"github/kdeck/TTVFast": {
+	"id": "github/kdeck/TTVFast",
+	"title": "github/kdeck/TTVFast",
+	"url": " https://rseng.github.io/software/repository/github/kdeck/TTVFast",
+	"content": "TTVFast efficiently calculates transit times for n-planet systems and the corresponding radial velocities."
 	},
-	"github/iric-soft/km": {
-	"id": "github/iric-soft/km",
-	"title": "github/iric-soft/km",
-	"url": " https://rseng.github.io/software/repository/github/iric-soft/km",
-	"content": "km : a software for RNA-seq investigation using k-mer decomposition"
+	"github/bwa-mem2/bwa-mem2": {
+	"id": "github/bwa-mem2/bwa-mem2",
+	"title": "github/bwa-mem2/bwa-mem2",
+	"url": " https://rseng.github.io/software/repository/github/bwa-mem2/bwa-mem2",
+	"content": "The next version of bwa-mem "
 	},
-	"github/UgoLomoio/gtex_visualizer": {
-	"id": "github/UgoLomoio/gtex_visualizer",
-	"title": "github/UgoLomoio/gtex_visualizer",
-	"url": " https://rseng.github.io/software/repository/github/UgoLomoio/gtex_visualizer",
-	"content": "None"
+	"github/josegit88/SCORPIO": {
+	"id": "github/josegit88/SCORPIO",
+	"title": "github/josegit88/SCORPIO",
+	"url": " https://rseng.github.io/software/repository/github/josegit88/SCORPIO",
+	"content": "Sky COllector of galaxy Pairs and Image Output"
 	},
-	"github/4pisky/fourpisky-core": {
-	"id": "github/4pisky/fourpisky-core",
-	"title": "github/4pisky/fourpisky-core",
-	"url": " https://rseng.github.io/software/repository/github/4pisky/fourpisky-core",
-	"content": "Core code defining alert handling, etc for the 4PiSky voevent hub."
+	"github/alphaparrot/ExoPlaSim": {
+	"id": "github/alphaparrot/ExoPlaSim",
+	"title": "github/alphaparrot/ExoPlaSim",
+	"url": " https://rseng.github.io/software/repository/github/alphaparrot/ExoPlaSim",
+	"content": "Exoplanet Planet Simulator (PlaSim extended for different planet types (including tidally-locked) and evolution on geological timescales--glaciers and carbon cycle)"
 	},
-	"github/b-pardi/BraTaDio": {
-	"id": "github/b-pardi/BraTaDio",
-	"title": "github/b-pardi/BraTaDio",
-	"url": " https://rseng.github.io/software/repository/github/b-pardi/BraTaDio",
-	"content": "Python based computational for for analyzing quartz crystal microbalance with dissipation (QCM-D) experimental data"
+	"github/bokeh/bokeh": {
+	"id": "github/bokeh/bokeh",
+	"title": "github/bokeh/bokeh",
+	"url": " https://rseng.github.io/software/repository/github/bokeh/bokeh",
+	"content": "Interactive Data Visualization in the browser, from  Python"
 	},
-	"github/nwchemgit/nwchem": {
-	"id": "github/nwchemgit/nwchem",
-	"title": "github/nwchemgit/nwchem",
-	"url": " https://rseng.github.io/software/repository/github/nwchemgit/nwchem",
-	"content": "NWChem: Open Source High-Performance Computational Chemistry"
+	"github/astropy/ccdproc": {
+	"id": "github/astropy/ccdproc",
+	"title": "github/astropy/ccdproc",
+	"url": " https://rseng.github.io/software/repository/github/astropy/ccdproc",
+	"content": "Astropy affiliated package for reducing optical/IR CCD data"
 	},
-	"github/lsds/SEEP": {
-	"id": "github/lsds/SEEP",
-	"title": "github/lsds/SEEP",
-	"url": " https://rseng.github.io/software/repository/github/lsds/SEEP",
-	"content": "Cluster computing using Stateful Dataflow Graphs"
+	"github/astropy/astropy": {
+	"id": "github/astropy/astropy",
+	"title": "github/astropy/astropy",
+	"url": " https://rseng.github.io/software/repository/github/astropy/astropy",
+	"content": "Repository for the Astropy core package"
 	},
-	"github/lsds/Neptune": {
-	"id": "github/lsds/Neptune",
-	"title": "github/lsds/Neptune",
-	"url": " https://rseng.github.io/software/repository/github/lsds/Neptune",
-	"content": "Neptune Execution Framework for Stream/Batch Spark Applications"
+	"github/astropy/halotools": {
+	"id": "github/astropy/halotools",
+	"title": "github/astropy/halotools",
+	"url": " https://rseng.github.io/software/repository/github/astropy/halotools",
+	"content": "Python package for studying large scale structure, cosmology, and galaxy evolution using N-body simulations and halo models"
 	},
-	"github/lsds/KungFu": {
-	"id": "github/lsds/KungFu",
-	"title": "github/lsds/KungFu",
-	"url": " https://rseng.github.io/software/repository/github/lsds/KungFu",
-	"content": "Fast and Adaptive Distributed Machine Learning for TensorFlow, PyTorch and MindSpore."
+	"github/astropy/astroplan": {
+	"id": "github/astropy/astroplan",
+	"title": "github/astropy/astroplan",
+	"url": " https://rseng.github.io/software/repository/github/astropy/astroplan",
+	"content": "Observation planning package for astronomers"
 	},
-	"github/lsds/Saber": {
-	"id": "github/lsds/Saber",
-	"title": "github/lsds/Saber",
-	"url": " https://rseng.github.io/software/repository/github/lsds/Saber",
-	"content": "Window-Based Hybrid CPU/GPU Stream Processing Engine"
+	"github/astropy/astroscrappy": {
+	"id": "github/astropy/astroscrappy",
+	"title": "github/astropy/astroscrappy",
+	"url": " https://rseng.github.io/software/repository/github/astropy/astroscrappy",
+	"content": "Speedy Cosmic Ray Annihilation Package in Python"
 	},
-	"github/lsds/Teechain": {
-	"id": "github/lsds/Teechain",
-	"title": "github/lsds/Teechain",
-	"url": " https://rseng.github.io/software/repository/github/lsds/Teechain",
-	"content": "Teechain: A Secure Payment Network with Asynchronous Blockchain Access"
+	"github/astropy/specutils": {
+	"id": "github/astropy/specutils",
+	"title": "github/astropy/specutils",
+	"url": " https://rseng.github.io/software/repository/github/astropy/specutils",
+	"content": "An Astropy coordinated package for astronomical spectroscopy.  Maintainers: @nmearl @rosteen @keflavich @eteq"
+	},
+	"github/astropy/astroquery": {
+	"id": "github/astropy/astroquery",
+	"title": "github/astropy/astroquery",
+	"url": " https://rseng.github.io/software/repository/github/astropy/astroquery",
+	"content": "Functions and classes to access online data resources. Maintainers: @keflavich and @bsipocz and @ceb8"
+	},
+	"github/astropy/SPISEA": {
+	"id": "github/astropy/SPISEA",
+	"title": "github/astropy/SPISEA",
+	"url": " https://rseng.github.io/software/repository/github/astropy/SPISEA",
+	"content": "Stellar Population Synthesis Modeling"
 	},
-	"github/lsds/sgx-lkl": {
-	"id": "github/lsds/sgx-lkl",
-	"title": "github/lsds/sgx-lkl",
-	"url": " https://rseng.github.io/software/repository/github/lsds/sgx-lkl",
-	"content": "SGX-LKL Library OS for running Linux applications inside of Intel SGX enclaves"
+	"github/CajoterBraak/demc2": {
+	"id": "github/CajoterBraak/demc2",
+	"title": "github/CajoterBraak/demc2",
+	"url": " https://rseng.github.io/software/repository/github/CajoterBraak/demc2",
+	"content": "Differential Evolution Markov Chain parameter estimation"
 	},
-	"github/lsds/LightSaber": {
-	"id": "github/lsds/LightSaber",
-	"title": "github/lsds/LightSaber",
-	"url": " https://rseng.github.io/software/repository/github/lsds/LightSaber",
-	"content": "Multi-core Window-Based Stream Processing Engine"
+	"github/entangled/entangled": {
+	"id": "github/entangled/entangled",
+	"title": "github/entangled/entangled",
+	"url": " https://rseng.github.io/software/repository/github/entangled/entangled",
+	"content": "bi-directional tangle daemon for literate programming"
 	},
-	"github/lsds/TaLoS": {
-	"id": "github/lsds/TaLoS",
-	"title": "github/lsds/TaLoS",
-	"url": " https://rseng.github.io/software/repository/github/lsds/TaLoS",
-	"content": "Efficient TLS termination inside Intel SGX enclaves for existing applications"
+	"github/SandoghdarLab/PiSCAT": {
+	"id": "github/SandoghdarLab/PiSCAT",
+	"title": "github/SandoghdarLab/PiSCAT",
+	"url": " https://rseng.github.io/software/repository/github/SandoghdarLab/PiSCAT",
+	"content": "PiSCAT is a python-based package with a graphical user interface for performing high-performance analysis on a variety of iSCAT measurements."
 	},
-	"github/lsds/faasm": {
-	"id": "github/lsds/faasm",
-	"title": "github/lsds/faasm",
-	"url": " https://rseng.github.io/software/repository/github/lsds/faasm",
-	"content": "High-performance stateful serverless runtime based on WebAssembly"
+	"github/NicolasHug/Surprise": {
+	"id": "github/NicolasHug/Surprise",
+	"title": "github/NicolasHug/Surprise",
+	"url": " https://rseng.github.io/software/repository/github/NicolasHug/Surprise",
+	"content": "A Python scikit for building and analyzing recommender systems"
 	},
-	"github/lsds/Crossbow": {
-	"id": "github/lsds/Crossbow",
-	"title": "github/lsds/Crossbow",
-	"url": " https://rseng.github.io/software/repository/github/lsds/Crossbow",
-	"content": "Crossbow: A Multi-GPU Deep Learning System for Training with Small Batch Sizes"
+	"github/DebduttaPaul/luminosity_function_of_lGRBs": {
+	"id": "github/DebduttaPaul/luminosity_function_of_lGRBs",
+	"title": "github/DebduttaPaul/luminosity_function_of_lGRBs",
+	"url": " https://rseng.github.io/software/repository/github/DebduttaPaul/luminosity_function_of_lGRBs",
+	"content": "None"
 	},
-	"github/alexriss/SpmImageTycoon.jl": {
-	"id": "github/alexriss/SpmImageTycoon.jl",
-	"title": "github/alexriss/SpmImageTycoon.jl",
-	"url": " https://rseng.github.io/software/repository/github/alexriss/SpmImageTycoon.jl",
-	"content": "Organize Scanning Probe Microscopy (SPM, STM, AFM) Images and Spectra."
+	"github/DebduttaPaul/luminosity_function_of_sGRBs": {
+	"id": "github/DebduttaPaul/luminosity_function_of_sGRBs",
+	"title": "github/DebduttaPaul/luminosity_function_of_sGRBs",
+	"url": " https://rseng.github.io/software/repository/github/DebduttaPaul/luminosity_function_of_sGRBs",
+	"content": "This is a repository containing databases and scripts for short GRB luminosity function work."
 	},
-	"github/surf-eds/one-button-compute": {
-	"id": "github/surf-eds/one-button-compute",
-	"title": "github/surf-eds/one-button-compute",
-	"url": " https://rseng.github.io/software/repository/github/surf-eds/one-button-compute",
-	"content": "Web API for dynamic compute"
+	"github/deeptools/HiCExplorer": {
+	"id": "github/deeptools/HiCExplorer",
+	"title": "github/deeptools/HiCExplorer",
+	"url": " https://rseng.github.io/software/repository/github/deeptools/HiCExplorer",
+	"content": "HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data."
 	},
-	"github/maayane/catsHTM": {
-	"id": "github/maayane/catsHTM",
-	"title": "github/maayane/catsHTM",
-	"url": " https://rseng.github.io/software/repository/github/maayane/catsHTM",
-	"content": "A tool for fast accessing and cross-matching large astronomical catalogs"
+	"github/deeptools/py2bit": {
+	"id": "github/deeptools/py2bit",
+	"title": "github/deeptools/py2bit",
+	"url": " https://rseng.github.io/software/repository/github/deeptools/py2bit",
+	"content": "A python library for accessing 2bit files"
 	},
-	"github/kimpenn/VERSE": {
-	"id": "github/kimpenn/VERSE",
-	"title": "github/kimpenn/VERSE",
-	"url": " https://rseng.github.io/software/repository/github/kimpenn/VERSE",
-	"content": "A versatile and efficient RNA-Seq read counting tool"
+	"github/deeptools/deepTools": {
+	"id": "github/deeptools/deepTools",
+	"title": "github/deeptools/deepTools",
+	"url": " https://rseng.github.io/software/repository/github/deeptools/deepTools",
+	"content": "a suite of python tools particularly developed for the efficient analysis of high-throughput sequencing data, such as ChIP-seq, RNA-seq or MNase-seq.  deepTools contains useful modules to process the mapped reads data for multiple quality checks, creating normalized coverage files in standard bedGraph and bigWig file formats, that allow comparison between different files (for example, treatment and control). Finally, using such normalized and standardized files, …"
 	},
-	"github/auctus-team/pycapacity": {
-	"id": "github/auctus-team/pycapacity",
-	"title": "github/auctus-team/pycapacity",
-	"url": " https://rseng.github.io/software/repository/github/auctus-team/pycapacity",
-	"content": "An efficient task-space capacity calculation package for robotics and biomechanics"
+	"github/deeptools/deeptools_intervals": {
+	"id": "github/deeptools/deeptools_intervals",
+	"title": "github/deeptools/deeptools_intervals",
+	"url": " https://rseng.github.io/software/repository/github/deeptools/deeptools_intervals",
+	"content": "A python library for constructing interval trees with associated exon/annotation information"
 	},
-	"github/epi2me-labs/mapula": {
-	"id": "github/epi2me-labs/mapula",
-	"title": "github/epi2me-labs/mapula",
-	"url": " https://rseng.github.io/software/repository/github/epi2me-labs/mapula",
-	"content": "Generate mapping stats at your chosen level of aggregation"
+	"github/AlexanderLabWHOI/EUKulele": {
+	"id": "github/AlexanderLabWHOI/EUKulele",
+	"title": "github/AlexanderLabWHOI/EUKulele",
+	"url": " https://rseng.github.io/software/repository/github/AlexanderLabWHOI/EUKulele",
+	"content": "Automatic eukaryotic taxonomic classification"
 	},
-	"github/zhangyk8/sconce-scms": {
-	"id": "github/zhangyk8/sconce-scms",
-	"title": "github/zhangyk8/sconce-scms",
-	"url": " https://rseng.github.io/software/repository/github/zhangyk8/sconce-scms",
-	"content": "Spherical and Conic Cosmic Web Finders with Extended SCMS Algorithms"
+	"github/sambit-giri/BCemu": {
+	"id": "github/sambit-giri/BCemu",
+	"title": "github/sambit-giri/BCemu",
+	"url": " https://rseng.github.io/software/repository/github/sambit-giri/BCemu",
+	"content": "None"
 	},
-	"github/leapigufpb/FuzzyClass": {
-	"id": "github/leapigufpb/FuzzyClass",
-	"title": "github/leapigufpb/FuzzyClass",
-	"url": " https://rseng.github.io/software/repository/github/leapigufpb/FuzzyClass",
+	"github/sambit-giri/BCMemu": {
+	"id": "github/sambit-giri/BCMemu",
+	"title": "github/sambit-giri/BCMemu",
+	"url": " https://rseng.github.io/software/repository/github/sambit-giri/BCMemu",
 	"content": "None"
 	},
-	"github/dlakaplan/pulsarsurveyscraper": {
-	"id": "github/dlakaplan/pulsarsurveyscraper",
-	"title": "github/dlakaplan/pulsarsurveyscraper",
-	"url": " https://rseng.github.io/software/repository/github/dlakaplan/pulsarsurveyscraper",
+	"github/sambit-giri/tools21cm": {
+	"id": "github/sambit-giri/tools21cm",
+	"title": "github/sambit-giri/tools21cm",
+	"url": " https://rseng.github.io/software/repository/github/sambit-giri/tools21cm",
 	"content": "None"
 	},
-	"github/mgalardini/pyseer": {
-	"id": "github/mgalardini/pyseer",
-	"title": "github/mgalardini/pyseer",
-	"url": " https://rseng.github.io/software/repository/github/mgalardini/pyseer",
-	"content": "SEER, reimplemented in python 🐍🔮"
+	"github/jpmens/jo": {
+	"id": "github/jpmens/jo",
+	"title": "github/jpmens/jo",
+	"url": " https://rseng.github.io/software/repository/github/jpmens/jo",
+	"content": "JSON output from a shell"
 	},
-	"github/WaterFutures/EPyT-Flow": {
-	"id": "github/WaterFutures/EPyT-Flow",
-	"title": "github/WaterFutures/EPyT-Flow",
-	"url": " https://rseng.github.io/software/repository/github/WaterFutures/EPyT-Flow",
-	"content": "A high-level interface designed for the easy generation of hydraulic and water quality scenario data."
+	"github/BradyAJohnston/MolecularNodes": {
+	"id": "github/BradyAJohnston/MolecularNodes",
+	"title": "github/BradyAJohnston/MolecularNodes",
+	"url": " https://rseng.github.io/software/repository/github/BradyAJohnston/MolecularNodes",
+	"content": "Toolbox for molecular animations in Blender, powered by Geometry Nodes."
 	},
-	"github/citiususc/veryfasttree": {
-	"id": "github/citiususc/veryfasttree",
-	"title": "github/citiususc/veryfasttree",
-	"url": " https://rseng.github.io/software/repository/github/citiususc/veryfasttree",
-	"content": "Speeding up the estimation of phylogenetic trees for large alignments through parallelization and vectorization strategies"
+	"github/radio1988/OneStopRNAseq": {
+	"id": "github/radio1988/OneStopRNAseq",
+	"title": "github/radio1988/OneStopRNAseq",
+	"url": " https://rseng.github.io/software/repository/github/radio1988/OneStopRNAseq",
+	"content": "None"
 	},
-	"github/citiususc/BigSeqKit": {
-	"id": "github/citiususc/BigSeqKit",
-	"title": "github/citiususc/BigSeqKit",
-	"url": " https://rseng.github.io/software/repository/github/citiususc/BigSeqKit",
-	"content": "BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale"
+	"github/lauralwatkins/cjam": {
+	"id": "github/lauralwatkins/cjam",
+	"title": "github/lauralwatkins/cjam",
+	"url": " https://rseng.github.io/software/repository/github/lauralwatkins/cjam",
+	"content": "CJAM : Jeans Anisotropic MGE modelling code written in C from Watkins et al. 2013, MNRAS, 436, 2598"
 	},
-	"github/a-griffiths/AutoSpec": {
-	"id": "github/a-griffiths/AutoSpec",
-	"title": "github/a-griffiths/AutoSpec",
-	"url": " https://rseng.github.io/software/repository/github/a-griffiths/AutoSpec",
-	"content": "Fast Automated Spectral Extraction Software for IFU Datacubes"
+	"github/NLeSC/UncertaintyVisualization": {
+	"id": "github/NLeSC/UncertaintyVisualization",
+	"title": "github/NLeSC/UncertaintyVisualization",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/UncertaintyVisualization",
+	"content": "None"
 	},
-	"github/ml-evs/matador": {
-	"id": "github/ml-evs/matador",
-	"title": "github/ml-evs/matador",
-	"url": " https://rseng.github.io/software/repository/github/ml-evs/matador",
-	"content": "⚗️ matador is an aggregator, manipulator and runner of first-principles calculations, written with a bent towards battery 🔋 electrode materials."
+	"github/NLeSC/cptm": {
+	"id": "github/NLeSC/cptm",
+	"title": "github/NLeSC/cptm",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/cptm",
+	"content": "Cross-Perspective Topic Modeling"
 	},
-	"github/matvii/ADAM": {
-	"id": "github/matvii/ADAM",
-	"title": "github/matvii/ADAM",
-	"url": " https://rseng.github.io/software/repository/github/matvii/ADAM",
-	"content": "Software package for asteroid shape reconstruction from disk-resolved observations"
+	"github/NLeSC/python-pcl": {
+	"id": "github/NLeSC/python-pcl",
+	"title": "github/NLeSC/python-pcl",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/python-pcl",
+	"content": "Python bindings to the pointcloud library (pcl)"
 	},
-	"github/Ashod/garli": {
-	"id": "github/Ashod/garli",
-	"title": "github/Ashod/garli",
-	"url": " https://rseng.github.io/software/repository/github/Ashod/garli",
-	"content": "Phylogenetic analysis of molecular sequence data using the maximum-likelihood criterion"
+	"github/NLeSC/DiVE": {
+	"id": "github/NLeSC/DiVE",
+	"title": "github/NLeSC/DiVE",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/DiVE",
+	"content": "An interactive 3D web viewer of up to million points on one screen that represent data. Provides interaction for viewing high-dimensional data that has been previously embedded in 3D or 2D. Based on graphosaurus.js and three.js. For a Linux release of a complete embedding+visualization pipeline please visit https://github.com/sonjageorgievska/Embed-Dive."
 	},
-	"github/raredd/kmdata": {
-	"id": "github/raredd/kmdata",
-	"title": "github/raredd/kmdata",
-	"url": " https://rseng.github.io/software/repository/github/raredd/kmdata",
-	"content": "kmdata: A Database of Reconstructed Individual Patient Level Data from 153 Oncology Clinical trials"
+	"github/NLeSC/eEcology-script-wrapper": {
+	"id": "github/NLeSC/eEcology-script-wrapper",
+	"title": "github/NLeSC/eEcology-script-wrapper",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/eEcology-script-wrapper",
+	"content": "Web application to make Matlab, R scripts available."
 	},
-	"github/SzokeMark-Andor/AstroDataProcessing": {
-	"id": "github/SzokeMark-Andor/AstroDataProcessing",
-	"title": "github/SzokeMark-Andor/AstroDataProcessing",
-	"url": " https://rseng.github.io/software/repository/github/SzokeMark-Andor/AstroDataProcessing",
-	"content": "This repository contains scripts and tools for analyzing and visualizing astronomical data, specifically targeting the moment-0 maps of NGC 0628 using various methods."
+	"github/NLeSC/lokum": {
+	"id": "github/NLeSC/lokum",
+	"title": "github/NLeSC/lokum",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/lokum",
+	"content": "Deploy GlusterFS, Docker, Spark and JupyterHub services on bare-metal cluster."
 	},
-	"github/SzokeMark-Andor/Chemical-composition-detector-of-Stars-using-spectroscopy": {
-	"id": "github/SzokeMark-Andor/Chemical-composition-detector-of-Stars-using-spectroscopy",
-	"title": "github/SzokeMark-Andor/Chemical-composition-detector-of-Stars-using-spectroscopy",
-	"url": " https://rseng.github.io/software/repository/github/SzokeMark-Andor/Chemical-composition-detector-of-Stars-using-spectroscopy",
-	"content": "This project analyzes spectroscopic data to detect helium, oxygen, and heliox in O and B-type stars, neutron stars, and white dwarfs. Using tools like SDSS and Astropy, it provides insights into stellar compositions and evolution through data visualization and analysis."
+	"github/NLeSC/pycoeman": {
+	"id": "github/NLeSC/pycoeman",
+	"title": "github/NLeSC/pycoeman",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/pycoeman",
+	"content": "Python Commands Execution Manager"
 	},
-	"github/SuperKogito/spafe": {
-	"id": "github/SuperKogito/spafe",
-	"title": "github/SuperKogito/spafe",
-	"url": " https://rseng.github.io/software/repository/github/SuperKogito/spafe",
-	"content": ":sound: spafe: Simplified Python Audio Features Extraction"
+	"github/NLeSC/boatswain": {
+	"id": "github/NLeSC/boatswain",
+	"title": "github/NLeSC/boatswain",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/boatswain",
+	"content": "A simple build system for docker images"
 	},
-	"github/gijut/gnucash": {
-	"id": "github/gijut/gnucash",
-	"title": "github/gijut/gnucash",
-	"url": " https://rseng.github.io/software/repository/github/gijut/gnucash",
-	"content": "Public Mirror of code.gnucash.org/gnucash"
+	"github/NLeSC/mcfly": {
+	"id": "github/NLeSC/mcfly",
+	"title": "github/NLeSC/mcfly",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/mcfly",
+	"content": "A deep learning tool for time series classification"
 	},
-	"github/arnikz/PIQMIe": {
-	"id": "github/arnikz/PIQMIe",
-	"title": "github/arnikz/PIQMIe",
-	"url": " https://rseng.github.io/software/repository/github/arnikz/PIQMIe",
-	"content": "Proteomics Identifications &amp; Quantitations Data Management &amp; Integration Service"
+	"github/NLeSC/python-template": {
+	"id": "github/NLeSC/python-template",
+	"title": "github/NLeSC/python-template",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/python-template",
+	"content": "Netherlands eScience Center Python Template"
 	},
-	"github/bommert/stabm": {
-	"id": "github/bommert/stabm",
-	"title": "github/bommert/stabm",
-	"url": " https://rseng.github.io/software/repository/github/bommert/stabm",
-	"content": "Stability measures"
+	"github/NLeSC/root-conda-recipes": {
+	"id": "github/NLeSC/root-conda-recipes",
+	"title": "github/NLeSC/root-conda-recipes",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/root-conda-recipes",
+	"content": "Conda recipes for building ROOT 5 and ROOT 6 binaries, root_numpy, rootpy, root_pandas, with both Python 2 and Python 3 support."
 	},
-	"github/multiwavelength/gleam": {
-	"id": "github/multiwavelength/gleam",
-	"title": "github/multiwavelength/gleam",
-	"url": " https://rseng.github.io/software/repository/github/multiwavelength/gleam",
-	"content": "Galaxy Line Emission &amp; Absorption Modeling"
+	"github/NLeSC/SalientDetector-matlab": {
+	"id": "github/NLeSC/SalientDetector-matlab",
+	"title": "github/NLeSC/SalientDetector-matlab",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/SalientDetector-matlab",
+	"content": "MATLAB Software for Large Scale Imaging research @ NLeSc"
 	},
-	"github/multiwavelength/redshifts": {
-	"id": "github/multiwavelength/redshifts",
-	"title": "github/multiwavelength/redshifts",
-	"url": " https://rseng.github.io/software/repository/github/multiwavelength/redshifts",
-	"content": "Search the VizieR and NED databases for spectroscopic redshifts around positions of interest."
+	"github/NLeSC/baklava": {
+	"id": "github/NLeSC/baklava",
+	"title": "github/NLeSC/baklava",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/baklava",
+	"content": "Deploy a Kubernetes cluster and big data services on the cloud."
 	},
-	"github/xuanxu/starmatrix": {
-	"id": "github/xuanxu/starmatrix",
-	"title": "github/xuanxu/starmatrix",
-	"url": " https://rseng.github.io/software/repository/github/xuanxu/starmatrix",
-	"content": "Modelling nucleosynthesis of galactic chemical elements"
+	"github/NLeSC/fairdatapoint": {
+	"id": "github/NLeSC/fairdatapoint",
+	"title": "github/NLeSC/fairdatapoint",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/fairdatapoint",
+	"content": "Provide machine-readable descriptions of your data assets"
 	},
-	"github/seqan/flexbar": {
-	"id": "github/seqan/flexbar",
-	"title": "github/seqan/flexbar",
-	"url": " https://rseng.github.io/software/repository/github/seqan/flexbar",
-	"content": "flexible barcode and adapter removal"
+	"github/NLeSC/osmium": {
+	"id": "github/NLeSC/osmium",
+	"title": "github/NLeSC/osmium",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/osmium",
+	"content": "Xenon Job Webservice"
 	},
-	"github/seqan/lambda": {
-	"id": "github/seqan/lambda",
-	"title": "github/seqan/lambda",
-	"url": " https://rseng.github.io/software/repository/github/seqan/lambda",
-	"content": "LAMBDA – the Local Aligner for Massive Biological DatA "
+	"github/NLeSC/case-law-app": {
+	"id": "github/NLeSC/case-law-app",
+	"title": "github/NLeSC/case-law-app",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/case-law-app",
+	"content": "None"
 	},
-	"github/seqan/lara": {
-	"id": "github/seqan/lara",
-	"title": "github/seqan/lara",
-	"url": " https://rseng.github.io/software/repository/github/seqan/lara",
-	"content": "LaRA 2: Lagrangian Relaxed structural Alignment"
+	"github/NLeSC/structure-from-motion": {
+	"id": "github/NLeSC/structure-from-motion",
+	"title": "github/NLeSC/structure-from-motion",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/structure-from-motion",
+	"content": "Structure from Motion Pipeline"
 	},
-	"github/ClusterMonteCarlo/CMC-COSMIC": {
-	"id": "github/ClusterMonteCarlo/CMC-COSMIC",
-	"title": "github/ClusterMonteCarlo/CMC-COSMIC",
-	"url": " https://rseng.github.io/software/repository/github/ClusterMonteCarlo/CMC-COSMIC",
-	"content": "None"
+	"github/NLeSC/ExtJS-DateTime": {
+	"id": "github/NLeSC/ExtJS-DateTime",
+	"title": "github/NLeSC/ExtJS-DateTime",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/ExtJS-DateTime",
+	"content": "DateTime input field for Ext JS"
 	},
-	"github/legacysurvey/unwise_psf": {
-	"id": "github/legacysurvey/unwise_psf",
-	"title": "github/legacysurvey/unwise_psf",
-	"url": " https://rseng.github.io/software/repository/github/legacysurvey/unwise_psf",
-	"content": "per-coadd PSF for unWISE forced photometry"
+	"github/NLeSC/hadrianus-scripts": {
+	"id": "github/NLeSC/hadrianus-scripts",
+	"title": "github/NLeSC/hadrianus-scripts",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/hadrianus-scripts",
+	"content": "Scripts used for the Hadrianus project"
 	},
-	"github/dgrun/FateID": {
-	"id": "github/dgrun/FateID",
-	"title": "github/dgrun/FateID",
-	"url": " https://rseng.github.io/software/repository/github/dgrun/FateID",
-	"content": "R package for the inference of cell fate bias from single-cell RNA-seq data."
+	"github/NLeSC/ShiCo": {
+	"id": "github/NLeSC/ShiCo",
+	"title": "github/NLeSC/ShiCo",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/ShiCo",
+	"content": "Netherlands eScience Center - Shifting Concepts Through Time project"
 	},
-	"github/single-cell-genetics/vireo": {
-	"id": "github/single-cell-genetics/vireo",
-	"title": "github/single-cell-genetics/vireo",
-	"url": " https://rseng.github.io/software/repository/github/single-cell-genetics/vireo",
-	"content": "Demultiplexing pooled scRNA-seq data with or without genotype reference"
+	"github/NLeSC/eSalsa-MPI": {
+	"id": "github/NLeSC/eSalsa-MPI",
+	"title": "github/NLeSC/eSalsa-MPI",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/eSalsa-MPI",
+	"content": "This project contains the wide area MPI used in the eSalsa project"
 	},
-	"github/single-cell-genetics/cellsnp-lite": {
-	"id": "github/single-cell-genetics/cellsnp-lite",
-	"title": "github/single-cell-genetics/cellsnp-lite",
-	"url": " https://rseng.github.io/software/repository/github/single-cell-genetics/cellsnp-lite",
-	"content": "Efficient genotyping bi-allelic SNPs on single cells"
+	"github/NLeSC/eEcology-SMS-reciever": {
+	"id": "github/NLeSC/eEcology-SMS-reciever",
+	"title": "github/NLeSC/eEcology-SMS-reciever",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/eEcology-SMS-reciever",
+	"content": "Webservice to store SMS messages into a database table"
 	},
-	"github/Kamuish/archi": {
-	"id": "github/Kamuish/archi",
-	"title": "github/Kamuish/archi",
-	"url": " https://rseng.github.io/software/repository/github/Kamuish/archi",
-	"content": "Pipeline to study CHEOPS background stars"
+	"github/NLeSC/PattyAnalytics": {
+	"id": "github/NLeSC/PattyAnalytics",
+	"title": "github/NLeSC/PattyAnalytics",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/PattyAnalytics",
+	"content": "Reusable point cloud analytics software. Includes segmentation, registration, file format conversion. "
 	},
-	"github/ChenYangyao/hipp": {
-	"id": "github/ChenYangyao/hipp",
-	"title": "github/ChenYangyao/hipp",
-	"url": " https://rseng.github.io/software/repository/github/ChenYangyao/hipp",
-	"content": "HIPP: Modern C++ Toolkit for HPC"
+	"github/NLeSC/noodles": {
+	"id": "github/NLeSC/noodles",
+	"title": "github/NLeSC/noodles",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/noodles",
+	"content": "Computational workflow engine, making distributed computing in Python easy!"
 	},
-	"github/neeravkaushal/RIDs-in-WCDs": {
-	"id": "github/neeravkaushal/RIDs-in-WCDs",
-	"title": "github/neeravkaushal/RIDs-in-WCDs",
-	"url": " https://rseng.github.io/software/repository/github/neeravkaushal/RIDs-in-WCDs",
+	"github/NLeSC/xenon-grpc": {
+	"id": "github/NLeSC/xenon-grpc",
+	"title": "github/NLeSC/xenon-grpc",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/xenon-grpc",
+	"content": "Xenon grpc based server"
+	},
+	"github/NLeSC/eAstroViz": {
+	"id": "github/NLeSC/eAstroViz",
+	"title": "github/NLeSC/eAstroViz",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/eAstroViz",
 	"content": "None"
 	},
-	"github/HIPS/autograd": {
-	"id": "github/HIPS/autograd",
-	"title": "github/HIPS/autograd",
-	"url": " https://rseng.github.io/software/repository/github/HIPS/autograd",
-	"content": "Efficiently computes derivatives of numpy code."
+	"github/NLeSC/eEcology-Annotation-WS": {
+	"id": "github/NLeSC/eEcology-Annotation-WS",
+	"title": "github/NLeSC/eEcology-Annotation-WS",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/eEcology-Annotation-WS",
+	"content": "Webservice for eEcology Annotation project."
 	},
-	"github/exoplanet-dev/celerite2": {
-	"id": "github/exoplanet-dev/celerite2",
-	"title": "github/exoplanet-dev/celerite2",
-	"url": " https://rseng.github.io/software/repository/github/exoplanet-dev/celerite2",
-	"content": "Fast &amp; scalable Gaussian Processes in one dimension"
+	"github/NLeSC/SalientDetector-python": {
+	"id": "github/NLeSC/SalientDetector-python",
+	"title": "github/NLeSC/SalientDetector-python",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/SalientDetector-python",
+	"content": "Python package for Large Scale Imaging research @ NLeSC"
 	},
-	"github/exoplanet-dev/exoplanet": {
-	"id": "github/exoplanet-dev/exoplanet",
-	"title": "github/exoplanet-dev/exoplanet",
-	"url": " https://rseng.github.io/software/repository/github/exoplanet-dev/exoplanet",
-	"content": "Fast &amp; scalable MCMC for all your exoplanet needs! "
+	"github/NLeSC/Massive-PotreeConverter": {
+	"id": "github/NLeSC/Massive-PotreeConverter",
+	"title": "github/NLeSC/Massive-PotreeConverter",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/Massive-PotreeConverter",
+	"content": "Convert massive pointcloud, for example ahn2 (640 Billion points) to potree format."
 	},
-	"github/hveerten/katu": {
-	"id": "github/hveerten/katu",
-	"title": "github/hveerten/katu",
-	"url": " https://rseng.github.io/software/repository/github/hveerten/katu",
+	"github/NLeSC/xenon-flow": {
+	"id": "github/NLeSC/xenon-flow",
+	"title": "github/NLeSC/xenon-flow",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/xenon-flow",
+	"content": "Run CWL workflows using Xenon"
+	},
+	"github/NLeSC/PattyData": {
+	"id": "github/NLeSC/PattyData",
+	"title": "github/NLeSC/PattyData",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/PattyData",
 	"content": "None"
 	},
-	"github/hveerten/boxfit": {
-	"id": "github/hveerten/boxfit",
-	"title": "github/hveerten/boxfit",
-	"url": " https://rseng.github.io/software/repository/github/hveerten/boxfit",
-	"content": "boxfit, a gamma-ray burst afterglow light curve generator based on two-dimensional hydrodynamics simulations"
+	"github/NLeSC/spot": {
+	"id": "github/NLeSC/spot",
+	"title": "github/NLeSC/spot",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/spot",
+	"content": "Try the demo"
 	},
-	"github/a-renzini/pygwb": {
-	"id": "github/a-renzini/pygwb",
-	"title": "github/a-renzini/pygwb",
-	"url": " https://rseng.github.io/software/repository/github/a-renzini/pygwb",
-	"content": "None"
+	"github/NLeSC/compressing-the-sky": {
+	"id": "github/NLeSC/compressing-the-sky",
+	"title": "github/NLeSC/compressing-the-sky",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/compressing-the-sky",
+	"content": "Compressing the Sky project with CWI DA"
 	},
-	"github/aliojjati/MGCAMB": {
-	"id": "github/aliojjati/MGCAMB",
-	"title": "github/aliojjati/MGCAMB",
-	"url": " https://rseng.github.io/software/repository/github/aliojjati/MGCAMB",
-	"content": "Repo for MGCAMB"
+	"github/NLeSC/esibayes": {
+	"id": "github/NLeSC/esibayes",
+	"title": "github/NLeSC/esibayes",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/esibayes",
+	"content": "Optimization and state estimation of dynamic models"
+	},
+	"github/NLeSC/eEcology-Classification": {
+	"id": "github/NLeSC/eEcology-Classification",
+	"title": "github/NLeSC/eEcology-Classification",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/eEcology-Classification",
+	"content": "Classification tool"
 	},
-	"github/alexander-pastukhov/bistablehistory": {
-	"id": "github/alexander-pastukhov/bistablehistory",
-	"title": "github/alexander-pastukhov/bistablehistory",
-	"url": " https://rseng.github.io/software/repository/github/alexander-pastukhov/bistablehistory",
-	"content": "A package to compute a cumulative history for time-series of perceptual dominance in bistable displays."
+	"github/NLeSC/ahn-pointcloud-viewer-ws": {
+	"id": "github/NLeSC/ahn-pointcloud-viewer-ws",
+	"title": "github/NLeSC/ahn-pointcloud-viewer-ws",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/ahn-pointcloud-viewer-ws",
+	"content": "Webservice for ahn pointcloud viewer"
 	},
-	"github/johncwok/CategoricalTimeSeries.jl": {
-	"id": "github/johncwok/CategoricalTimeSeries.jl",
-	"title": "github/johncwok/CategoricalTimeSeries.jl",
-	"url": " https://rseng.github.io/software/repository/github/johncwok/CategoricalTimeSeries.jl",
-	"content": "Toolbox for categorical time-series analysis."
+	"github/NLeSC/SalientDescriptor-matlab": {
+	"id": "github/NLeSC/SalientDescriptor-matlab",
+	"title": "github/NLeSC/SalientDescriptor-matlab",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/SalientDescriptor-matlab",
+	"content": "None"
 	},
-	"github/tcassanelli/pywpf": {
-	"id": "github/tcassanelli/pywpf",
-	"title": "github/tcassanelli/pywpf",
-	"url": " https://rseng.github.io/software/repository/github/tcassanelli/pywpf",
-	"content": "The purpose of this program is to see the effectivity and efficiency that a PCA folding analysis has compared to the Epoch Folding, which is the standard used for pulsar period computations."
+	"github/NLeSC/Chemical-Analytics-Platform": {
+	"id": "github/NLeSC/Chemical-Analytics-Platform",
+	"title": "github/NLeSC/Chemical-Analytics-Platform",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/Chemical-Analytics-Platform",
+	"content": "Scripts to create chemical analytics platform based on Knime"
 	},
-	"github/jamesaird/FAST": {
-	"id": "github/jamesaird/FAST",
-	"title": "github/jamesaird/FAST",
-	"url": " https://rseng.github.io/software/repository/github/jamesaird/FAST",
-	"content": "Fitting and Assessment of Synthetic Templates  - an IDL-based code that fits stellar population synthesis templates to broadband photometry and/or spectra."
+	"github/NLeSC/xenon-cli": {
+	"id": "github/NLeSC/xenon-cli",
+	"title": "github/NLeSC/xenon-cli",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/xenon-cli",
+	"content": "Perform files and jobs operations with Xenon library from command line"
 	},
-	"github/cosmo-epfl/chemiscope": {
-	"id": "github/cosmo-epfl/chemiscope",
-	"title": "github/cosmo-epfl/chemiscope",
-	"url": " https://rseng.github.io/software/repository/github/cosmo-epfl/chemiscope",
-	"content": "An interactive structure/property explorer for materials and molecules"
+	"github/NLeSC/MAGMa": {
+	"id": "github/NLeSC/MAGMa",
+	"title": "github/NLeSC/MAGMa",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/MAGMa",
+	"content": "eMetabolomics project: Mass Annotation based on in silico Generated Metabolites"
 	},
-	"github/1313e/PRISM": {
-	"id": "github/1313e/PRISM",
-	"title": "github/1313e/PRISM",
-	"url": " https://rseng.github.io/software/repository/github/1313e/PRISM",
-	"content": "An alternative to MCMC for rapid analysis of models"
+	"github/NLeSC/nlesc-serverless-boilerplate": {
+	"id": "github/NLeSC/nlesc-serverless-boilerplate",
+	"title": "github/NLeSC/nlesc-serverless-boilerplate",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/nlesc-serverless-boilerplate",
+	"content": "An AWS amplify boilerplate web application"
 	},
-	"github/1313e/CMasher": {
-	"id": "github/1313e/CMasher",
-	"title": "github/1313e/CMasher",
-	"url": " https://rseng.github.io/software/repository/github/1313e/CMasher",
-	"content": "Scientific colormaps for making accessible, informative and &#39;cmashing&#39; plots"
+	"github/NLeSC/litstudy": {
+	"id": "github/NLeSC/litstudy",
+	"title": "github/NLeSC/litstudy",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/litstudy",
+	"content": "Using the power of Python and Jupyter notebooks to automate analysis of scientific literature"
 	},
-	"github/tsipkens/atems": {
-	"id": "github/tsipkens/atems",
-	"title": "github/tsipkens/atems",
-	"url": " https://rseng.github.io/software/repository/github/tsipkens/atems",
-	"content": "A MATLAB codebase to analyze TEM images of soot, which includes new methods associated with this project and a compilation of other pre-existing methods into a single package."
+	"github/NLeSC/OCTSegmentation": {
+	"id": "github/NLeSC/OCTSegmentation",
+	"title": "github/NLeSC/OCTSegmentation",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/OCTSegmentation",
+	"content": "EYR4-OCTSEG "
 	},
-	"github/EnricoCorsaro/FAMED": {
-	"id": "github/EnricoCorsaro/FAMED",
-	"title": "github/EnricoCorsaro/FAMED",
-	"url": " https://rseng.github.io/software/repository/github/EnricoCorsaro/FAMED",
-	"content": "FAMED (Fast and AutoMated pEak bagging with DIAMONDS) - Pipeline"
+	"github/NLeSC/docker-couch-admin": {
+	"id": "github/NLeSC/docker-couch-admin",
+	"title": "github/NLeSC/docker-couch-admin",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/docker-couch-admin",
+	"content": "Configures a web service using angular-schema-form and CouchDB"
 	},
-	"github/EnricoCorsaro/DIAMONDS": {
-	"id": "github/EnricoCorsaro/DIAMONDS",
-	"title": "github/EnricoCorsaro/DIAMONDS",
-	"url": " https://rseng.github.io/software/repository/github/EnricoCorsaro/DIAMONDS",
-	"content": "DIAMONDS (high-DImensional And multi-MOdal NesteD Sampling) - Bayesian Inference Software"
+	"github/NLeSC/pattyvis": {
+	"id": "github/NLeSC/pattyvis",
+	"title": "github/NLeSC/pattyvis",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/pattyvis",
+	"content": "Webgl pointcloud visualization of the Via Appia based on potree"
 	},
-	"github/bayesn/bayesn": {
-	"id": "github/bayesn/bayesn",
-	"title": "github/bayesn/bayesn",
-	"url": " https://rseng.github.io/software/repository/github/bayesn/bayesn",
-	"content": "A numpyro implementation of BayeSN, the optical-NIR SED model for type Ia supernovae"
+	"github/NLeSC/xtas": {
+	"id": "github/NLeSC/xtas",
+	"title": "github/NLeSC/xtas",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/xtas",
+	"content": "Distributed text analysis suite based on Celery"
 	},
-	"github/MonashSmartStructures/ospgrillage": {
-	"id": "github/MonashSmartStructures/ospgrillage",
-	"title": "github/MonashSmartStructures/ospgrillage",
-	"url": " https://rseng.github.io/software/repository/github/MonashSmartStructures/ospgrillage",
-	"content": "`ospgrillage` is a package that wraps `OpenSeesPy` with an interface dedicated to the development and analysis of regular bridge deck grillage models."
+	"github/NLeSC/EEG-epilepsy-diagnosis": {
+	"id": "github/NLeSC/EEG-epilepsy-diagnosis",
+	"title": "github/NLeSC/EEG-epilepsy-diagnosis",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC/EEG-epilepsy-diagnosis",
+	"content": "Detection of Epilepsy from EEG data (14 channel x 5 minutes)"
 	},
-	"github/tortellini-tools/action": {
-	"id": "github/tortellini-tools/action",
-	"title": "github/tortellini-tools/action",
-	"url": " https://rseng.github.io/software/repository/github/tortellini-tools/action",
-	"content": "GH action to check dependency licence issues using ort"
+	"github/AntonelliLab/seqcap_processor": {
+	"id": "github/AntonelliLab/seqcap_processor",
+	"title": "github/AntonelliLab/seqcap_processor",
+	"url": " https://rseng.github.io/software/repository/github/AntonelliLab/seqcap_processor",
+	"content": "Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics"
 	},
-	"github/felixchenier/kineticstoolkit": {
-	"id": "github/felixchenier/kineticstoolkit",
-	"title": "github/felixchenier/kineticstoolkit",
-	"url": " https://rseng.github.io/software/repository/github/felixchenier/kineticstoolkit",
-	"content": "Kinetics Toolkit is an open-source, pure-python package of integrated classes and functions that aims to facilitate research in biomechanics using python."
+	"github/christophuv/PeakBot_example": {
+	"id": "github/christophuv/PeakBot_example",
+	"title": "github/christophuv/PeakBot_example",
+	"url": " https://rseng.github.io/software/repository/github/christophuv/PeakBot_example",
+	"content": "Example scripts on how to use PeakBot"
 	},
-	"github/PaulHancock/Robbie": {
-	"id": "github/PaulHancock/Robbie",
-	"title": "github/PaulHancock/Robbie",
-	"url": " https://rseng.github.io/software/repository/github/PaulHancock/Robbie",
-	"content": "Robbie: A batch processing work-flow for the detection of radio transients and variables"
+	"github/grzeimann/Diagnose": {
+	"id": "github/grzeimann/Diagnose",
+	"title": "github/grzeimann/Diagnose",
+	"url": " https://rseng.github.io/software/repository/github/grzeimann/Diagnose",
+	"content": "None"
 	},
-	"github/PaulHancock/Aegean": {
-	"id": "github/PaulHancock/Aegean",
-	"title": "github/PaulHancock/Aegean",
-	"url": " https://rseng.github.io/software/repository/github/PaulHancock/Aegean",
-	"content": "The Aegean source finding program and associated tools"
+	"github/CEA-MetroCarac/pystack3d": {
+	"id": "github/CEA-MetroCarac/pystack3d",
+	"title": "github/CEA-MetroCarac/pystack3d",
+	"url": " https://rseng.github.io/software/repository/github/CEA-MetroCarac/pystack3d",
+	"content": "Package to process images stacks (typically from 3D FIB-SEM)"
 	},
-	"github/ParBLiSS/FastANI": {
-	"id": "github/ParBLiSS/FastANI",
-	"title": "github/ParBLiSS/FastANI",
-	"url": " https://rseng.github.io/software/repository/github/ParBLiSS/FastANI",
-	"content": "Fast Whole-Genome Similarity (ANI) Estimation"
+	"github/CEA-MetroCarac/fitspy": {
+	"id": "github/CEA-MetroCarac/fitspy",
+	"title": "github/CEA-MetroCarac/fitspy",
+	"url": " https://rseng.github.io/software/repository/github/CEA-MetroCarac/fitspy",
+	"content": "Generic tool dedicated to fit spectra in python "
 	},
-	"github/LandSciTech/ccviR": {
-	"id": "github/LandSciTech/ccviR",
-	"title": "github/LandSciTech/ccviR",
-	"url": " https://rseng.github.io/software/repository/github/LandSciTech/ccviR",
-	"content": "Implement NatureServe climate change vulnerability index in R"
+	"github/vmplacco/linemake": {
+	"id": "github/vmplacco/linemake",
+	"title": "github/vmplacco/linemake",
+	"url": " https://rseng.github.io/software/repository/github/vmplacco/linemake",
+	"content": "linelist generator"
 	},
-	"github/ColemanRHarris/mxnorm": {
-	"id": "github/ColemanRHarris/mxnorm",
-	"title": "github/ColemanRHarris/mxnorm",
-	"url": " https://rseng.github.io/software/repository/github/ColemanRHarris/mxnorm",
-	"content": "R package to normalize multiplexed imaging data."
+	"github/pyranges/pyrle": {
+	"id": "github/pyranges/pyrle",
+	"title": "github/pyranges/pyrle",
+	"url": " https://rseng.github.io/software/repository/github/pyranges/pyrle",
+	"content": "Numerical Run Length Encoding and Arithmetic in Cython"
 	},
-	"github/GabrielNakamura/FishPhyloMaker": {
-	"id": "github/GabrielNakamura/FishPhyloMaker",
-	"title": "github/GabrielNakamura/FishPhyloMaker",
-	"url": " https://rseng.github.io/software/repository/github/GabrielNakamura/FishPhyloMaker",
-	"content": "Making phylogenies for a list of fish species "
+	"github/EMResearch/EvoMaster": {
+	"id": "github/EMResearch/EvoMaster",
+	"title": "github/EMResearch/EvoMaster",
+	"url": " https://rseng.github.io/software/repository/github/EMResearch/EvoMaster",
+	"content": "A tool for automatically generating system-level test cases. Currently targeting REST APIs."
 	},
-	"github/danielenricocahall/elephas": {
-	"id": "github/danielenricocahall/elephas",
-	"title": "github/danielenricocahall/elephas",
-	"url": " https://rseng.github.io/software/repository/github/danielenricocahall/elephas",
-	"content": "Distributed Deep learning with Keras &amp; Spark"
+	"github/medvedevgroup/TwoPaCo": {
+	"id": "github/medvedevgroup/TwoPaCo",
+	"title": "github/medvedevgroup/TwoPaCo",
+	"url": " https://rseng.github.io/software/repository/github/medvedevgroup/TwoPaCo",
+	"content": "A fast constructor of the compressed de Bruijn graph from many genomes"
 	},
-	"github/Tarskin/LaCyTools": {
-	"id": "github/Tarskin/LaCyTools",
-	"title": "github/Tarskin/LaCyTools",
-	"url": " https://rseng.github.io/software/repository/github/Tarskin/LaCyTools",
-	"content": "A high-throughput data extraction package for LC-MS data."
+	"github/medvedevgroup/varmatch": {
+	"id": "github/medvedevgroup/varmatch",
+	"title": "github/medvedevgroup/varmatch",
+	"url": " https://rseng.github.io/software/repository/github/medvedevgroup/varmatch",
+	"content": "robust matching of small variant datasets using flexible scoring schemes"
 	},
-	"github/gmbrandt/HTOF": {
-	"id": "github/gmbrandt/HTOF",
-	"title": "github/gmbrandt/HTOF",
-	"url": " https://rseng.github.io/software/repository/github/gmbrandt/HTOF",
-	"content": "HTOF: Code which parses the intermediate data from Hipparcos and Gaia and fits astrometric solutions to those data. Capable of computing likelyhoods and parameter errors in line with the catalog."
+	"github/JoeMcEwen/FAST-PT": {
+	"id": "github/JoeMcEwen/FAST-PT",
+	"title": "github/JoeMcEwen/FAST-PT",
+	"url": " https://rseng.github.io/software/repository/github/JoeMcEwen/FAST-PT",
+	"content": "None"
 	},
-	"github/gmbrandt/xwavecal": {
-	"id": "github/gmbrandt/xwavecal",
-	"title": "github/gmbrandt/xwavecal",
-	"url": " https://rseng.github.io/software/repository/github/gmbrandt/xwavecal",
-	"content": "A library of routines for wavelength calibrating echelle spectrographs for high precision radial velocity work. A limited data-reduction pipeline is included."
+	"github/yuhuan-wu/mobilesal": {
+	"id": "github/yuhuan-wu/mobilesal",
+	"title": "github/yuhuan-wu/mobilesal",
+	"url": " https://rseng.github.io/software/repository/github/yuhuan-wu/mobilesal",
+	"content": "[IEEE TPAMI21] MobileSal: Extremely Efficient RGB-D Salient Object Detection [PyTorch &amp; Jittor]"
 	},
-	"github/lorenaacuna/GASTLI": {
-	"id": "github/lorenaacuna/GASTLI",
-	"title": "github/lorenaacuna/GASTLI",
-	"url": " https://rseng.github.io/software/repository/github/lorenaacuna/GASTLI",
-	"content": "GAS gianT modeL for Interiors"
+	"github/nliulab/HRnV-Calc": {
+	"id": "github/nliulab/HRnV-Calc",
+	"title": "github/nliulab/HRnV-Calc",
+	"url": " https://rseng.github.io/software/repository/github/nliulab/HRnV-Calc",
+	"content": "HRnV-Calc software for heart rate n-variability and heart rate variability analysis"
 	},
-	"github/iobio-zjut/IPTDFold": {
-	"id": "github/iobio-zjut/IPTDFold",
-	"title": "github/iobio-zjut/IPTDFold",
-	"url": " https://rseng.github.io/software/repository/github/iobio-zjut/IPTDFold",
-	"content": "A de novo protein structure prediction by iterative partition sampling, topology adjustment, and residue-level distance deviation optimization"
+	"github/Qepanna/goFlux": {
+	"id": "github/Qepanna/goFlux",
+	"title": "github/Qepanna/goFlux",
+	"url": " https://rseng.github.io/software/repository/github/Qepanna/goFlux",
+	"content": "goFlux: A user-friendly way to calculate GHG fluxes yourself, regardless of user experience"
 	},
-	"github/somefunAgba/NLSIG-COVID19Lab": {
-	"id": "github/somefunAgba/NLSIG-COVID19Lab",
-	"title": "github/somefunAgba/NLSIG-COVID19Lab",
-	"url": " https://rseng.github.io/software/repository/github/somefunAgba/NLSIG-COVID19Lab",
-	"content": "A nlogistic-sigmoid playground for modelling the COVID-19 pandemic growth"
+	"github/esplint/IRACpm": {
+	"id": "github/esplint/IRACpm",
+	"title": "github/esplint/IRACpm",
+	"url": " https://rseng.github.io/software/repository/github/esplint/IRACpm",
+	"content": "IRACpm R Package: Applies a 7-8 order distortion correction to IRAC astrometric data from the Spitzer Space Telescope"
 	},
-	"github/ccsb-scripps/Illustrate": {
-	"id": "github/ccsb-scripps/Illustrate",
-	"title": "github/ccsb-scripps/Illustrate",
-	"url": " https://rseng.github.io/software/repository/github/ccsb-scripps/Illustrate",
-	"content": "Biomolecular Illustration Tool"
+	"github/davidaknowles/leafcutter": {
+	"id": "github/davidaknowles/leafcutter",
+	"title": "github/davidaknowles/leafcutter",
+	"url": " https://rseng.github.io/software/repository/github/davidaknowles/leafcutter",
+	"content": "Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard"
 	},
-	"github/baiwenjia/ukbb_cardiac": {
-	"id": "github/baiwenjia/ukbb_cardiac",
-	"title": "github/baiwenjia/ukbb_cardiac",
-	"url": " https://rseng.github.io/software/repository/github/baiwenjia/ukbb_cardiac",
-	"content": "Some code for processing and analysing UK Biobank cardiac MR images."
+	"github/TeraTrees/TIPP": {
+	"id": "github/TeraTrees/TIPP",
+	"title": "github/TeraTrees/TIPP",
+	"url": " https://rseng.github.io/software/repository/github/TeraTrees/TIPP",
+	"content": "tool for Taxonomic Identification and Phylogenetic Profiling"
 	},
-	"github/tseemann/shovill": {
-	"id": "github/tseemann/shovill",
-	"title": "github/tseemann/shovill",
-	"url": " https://rseng.github.io/software/repository/github/tseemann/shovill",
-	"content": "⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads"
+	"github/huchiayu/ParticleGridMapper.jl": {
+	"id": "github/huchiayu/ParticleGridMapper.jl",
+	"title": "github/huchiayu/ParticleGridMapper.jl",
+	"url": " https://rseng.github.io/software/repository/github/huchiayu/ParticleGridMapper.jl",
+	"content": "None"
 	},
-	"github/tseemann/barrnap": {
-	"id": "github/tseemann/barrnap",
-	"title": "github/tseemann/barrnap",
-	"url": " https://rseng.github.io/software/repository/github/tseemann/barrnap",
-	"content": ":microscope: :leo: Bacterial ribosomal RNA predictor"
+	"github/hsso/crete": {
+	"id": "github/hsso/crete",
+	"title": "github/hsso/crete",
+	"url": " https://rseng.github.io/software/repository/github/hsso/crete",
+	"content": "Comet RadiativE Transfer and Excitation"
 	},
-	"github/tseemann/abricate": {
-	"id": "github/tseemann/abricate",
-	"title": "github/tseemann/abricate",
-	"url": " https://rseng.github.io/software/repository/github/tseemann/abricate",
-	"content": ":mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes"
+	"github/NASA-PDS/naif-pds4-bundler": {
+	"id": "github/NASA-PDS/naif-pds4-bundler",
+	"title": "github/NASA-PDS/naif-pds4-bundler",
+	"url": " https://rseng.github.io/software/repository/github/NASA-PDS/naif-pds4-bundler",
+	"content": "Package to generate PDS4 SPICE Kernels Archives"
 	},
-	"github/tseemann/mlst": {
-	"id": "github/tseemann/mlst",
-	"title": "github/tseemann/mlst",
-	"url": " https://rseng.github.io/software/repository/github/tseemann/mlst",
-	"content": ":id: Scan contig files against PubMLST typing schemes"
+	"github/stinefm/relsad": {
+	"id": "github/stinefm/relsad",
+	"title": "github/stinefm/relsad",
+	"url": " https://rseng.github.io/software/repository/github/stinefm/relsad",
+	"content": "A Python package for reliability assessment of modern distribution systems."
 	},
-	"github/tseemann/snp-dists": {
-	"id": "github/tseemann/snp-dists",
-	"title": "github/tseemann/snp-dists",
-	"url": " https://rseng.github.io/software/repository/github/tseemann/snp-dists",
-	"content": "Pairwise SNP distance matrix from a FASTA sequence alignment"
+	"github/j-faria/kima": {
+	"id": "github/j-faria/kima",
+	"title": "github/j-faria/kima",
+	"url": " https://rseng.github.io/software/repository/github/j-faria/kima",
+	"content": "Exoplanet detection in RVs with DNest4 and GPs"
 	},
-	"github/tseemann/snippy": {
-	"id": "github/tseemann/snippy",
-	"title": "github/tseemann/snippy",
-	"url": " https://rseng.github.io/software/repository/github/tseemann/snippy",
-	"content": ":scissors: :zap: Rapid haploid variant calling and core genome alignment"
+	"github/liulei/volks2": {
+	"id": "github/liulei/volks2",
+	"title": "github/liulei/volks2",
+	"url": " https://rseng.github.io/software/repository/github/liulei/volks2",
+	"content": "VLBI Observation for single pulse Localization Keen Searcher, 2nd release"
 	},
-	"github/tseemann/samclip": {
-	"id": "github/tseemann/samclip",
-	"title": "github/tseemann/samclip",
-	"url": " https://rseng.github.io/software/repository/github/tseemann/samclip",
-	"content": "Filter SAM file for soft and hard clipped alignments"
+	"github/ltlancas/walter": {
+	"id": "github/ltlancas/walter",
+	"title": "github/ltlancas/walter",
+	"url": " https://rseng.github.io/software/repository/github/ltlancas/walter",
+	"content": "A code to make predictions for the number of resolved stars in a given observation with the future Nancy Grace Roman Space Telescope (RST)"
 	},
-	"github/tseemann/VelvetOptimiser": {
-	"id": "github/tseemann/VelvetOptimiser",
-	"title": "github/tseemann/VelvetOptimiser",
-	"url": " https://rseng.github.io/software/repository/github/tseemann/VelvetOptimiser",
-	"content": ":chart_with_upwards_trend: Automatically optimise three of Velvet&#39;s assembly parameters."
+	"github/alastair-droop/fqtools": {
+	"id": "github/alastair-droop/fqtools",
+	"title": "github/alastair-droop/fqtools",
+	"url": " https://rseng.github.io/software/repository/github/alastair-droop/fqtools",
+	"content": "An efficient FASTQ manipulation suite"
 	},
-	"github/tseemann/prokka": {
-	"id": "github/tseemann/prokka",
-	"title": "github/tseemann/prokka",
-	"url": " https://rseng.github.io/software/repository/github/tseemann/prokka",
-	"content": ":zap: :aquarius: Rapid prokaryotic genome annotation"
+	"github/zhangrengang/SubPhaser": {
+	"id": "github/zhangrengang/SubPhaser",
+	"title": "github/zhangrengang/SubPhaser",
+	"url": " https://rseng.github.io/software/repository/github/zhangrengang/SubPhaser",
+	"content": "Phase and visualize subgenomes of an allopolyploid or hybrid based on the repetitive kmers."
 	},
-	"github/CBIIT-CGBB/gcMECM": {
-	"id": "github/CBIIT-CGBB/gcMECM",
-	"title": "github/CBIIT-CGBB/gcMECM",
-	"url": " https://rseng.github.io/software/repository/github/CBIIT-CGBB/gcMECM",
+	"github/ybillchen/particle_spray": {
+	"id": "github/ybillchen/particle_spray",
+	"title": "github/ybillchen/particle_spray",
+	"url": " https://rseng.github.io/software/repository/github/ybillchen/particle_spray",
+	"content": "Particle spray algorithm by Chen et al. (2024)."
+	},
+	"github/etiennepayet/nti": {
+	"id": "github/etiennepayet/nti",
+	"title": "github/etiennepayet/nti",
+	"url": " https://rseng.github.io/software/repository/github/etiennepayet/nti",
 	"content": "None"
 	},
-	"github/rfeldmann/leopy": {
-	"id": "github/rfeldmann/leopy",
-	"title": "github/rfeldmann/leopy",
-	"url": " https://rseng.github.io/software/repository/github/rfeldmann/leopy",
-	"content": "Likelihood Estimation of Observational data with Python"
+	"github/eaobservatory/jcmt_coadd": {
+	"id": "github/eaobservatory/jcmt_coadd",
+	"title": "github/eaobservatory/jcmt_coadd",
+	"url": " https://rseng.github.io/software/repository/github/eaobservatory/jcmt_coadd",
+	"content": "UKT14 photometry data reduction tool"
 	},
-	"github/afeinstein20/eleanor": {
-	"id": "github/afeinstein20/eleanor",
-	"title": "github/afeinstein20/eleanor",
-	"url": " https://rseng.github.io/software/repository/github/afeinstein20/eleanor",
-	"content": "A tool for light curve extraction from the TESS FFIs."
+	"github/BobAubouin/Python_Anesthesia_Simulator": {
+	"id": "github/BobAubouin/Python_Anesthesia_Simulator",
+	"title": "github/BobAubouin/Python_Anesthesia_Simulator",
+	"url": " https://rseng.github.io/software/repository/github/BobAubouin/Python_Anesthesia_Simulator",
+	"content": "Simulate the effect of drugs during total intrevenous anesthesia"
 	},
-	"github/afeinstein20/stella": {
-	"id": "github/afeinstein20/stella",
-	"title": "github/afeinstein20/stella",
-	"url": " https://rseng.github.io/software/repository/github/afeinstein20/stella",
-	"content": "For characterizing flares with convolutional neural networks"
+	"github/YuLab-SMU/treeio": {
+	"id": "github/YuLab-SMU/treeio",
+	"title": "github/YuLab-SMU/treeio",
+	"url": " https://rseng.github.io/software/repository/github/YuLab-SMU/treeio",
+	"content": ":seedling: Base Classes and Functions for Phylogenetic Tree Input and Output"
 	},
-	"github/rnikutta/rhocube": {
-	"id": "github/rnikutta/rhocube",
-	"title": "github/rnikutta/rhocube",
-	"url": " https://rseng.github.io/software/repository/github/rnikutta/rhocube",
-	"content": "Compute 3D density models, and integrate over dz if requested"
+	"github/Tarskin/LaCyTools": {
+	"id": "github/Tarskin/LaCyTools",
+	"title": "github/Tarskin/LaCyTools",
+	"url": " https://rseng.github.io/software/repository/github/Tarskin/LaCyTools",
+	"content": "A high-throughput data extraction package for LC-MS data."
 	},
-	"github/MRCIEU/metaboprep": {
-	"id": "github/MRCIEU/metaboprep",
-	"title": "github/MRCIEU/metaboprep",
-	"url": " https://rseng.github.io/software/repository/github/MRCIEU/metaboprep",
-	"content": "a pipeline of metabolomics data processing and quality control"
+	"github/Kamuish/archi": {
+	"id": "github/Kamuish/archi",
+	"title": "github/Kamuish/archi",
+	"url": " https://rseng.github.io/software/repository/github/Kamuish/archi",
+	"content": "Pipeline to study CHEOPS background stars"
 	},
-	"github/MRCIEU/PHESANT": {
-	"id": "github/MRCIEU/PHESANT",
-	"title": "github/MRCIEU/PHESANT",
-	"url": " https://rseng.github.io/software/repository/github/MRCIEU/PHESANT",
-	"content": "PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank"
+	"github/AstrobioMike/GToTree": {
+	"id": "github/AstrobioMike/GToTree",
+	"title": "github/AstrobioMike/GToTree",
+	"url": " https://rseng.github.io/software/repository/github/AstrobioMike/GToTree",
+	"content": "A user-friendly workflow for phylogenomics"
 	},
-	"github/ptiede/Comrade.jl": {
-	"id": "github/ptiede/Comrade.jl",
-	"title": "github/ptiede/Comrade.jl",
-	"url": " https://rseng.github.io/software/repository/github/ptiede/Comrade.jl",
+	"github/vsulis5357/Sonification": {
+	"id": "github/vsulis5357/Sonification",
+	"title": "github/vsulis5357/Sonification",
+	"url": " https://rseng.github.io/software/repository/github/vsulis5357/Sonification",
 	"content": "None"
 	},
-	"github/fjprichard/PyAFBF": {
-	"id": "github/fjprichard/PyAFBF",
-	"title": "github/fjprichard/PyAFBF",
-	"url": " https://rseng.github.io/software/repository/github/fjprichard/PyAFBF",
-	"content": "A python library for sampling image textures from the anisotropic fractional Brownian field."
+	"github/timkartar/RNAscape": {
+	"id": "github/timkartar/RNAscape",
+	"title": "github/timkartar/RNAscape",
+	"url": " https://rseng.github.io/software/repository/github/timkartar/RNAscape",
+	"content": "Geometry faithful 2D RNA visualization"
 	},
-	"github/huchiayu/ParticleGridMapper.jl": {
-	"id": "github/huchiayu/ParticleGridMapper.jl",
-	"title": "github/huchiayu/ParticleGridMapper.jl",
-	"url": " https://rseng.github.io/software/repository/github/huchiayu/ParticleGridMapper.jl",
-	"content": "None"
+	"github/BEAST-Fitting/beast": {
+	"id": "github/BEAST-Fitting/beast",
+	"title": "github/BEAST-Fitting/beast",
+	"url": " https://rseng.github.io/software/repository/github/BEAST-Fitting/beast",
+	"content": "Bayesian Extinction And Stellar Tool"
 	},
-	"github/legolason/PyQSOFit": {
-	"id": "github/legolason/PyQSOFit",
-	"title": "github/legolason/PyQSOFit",
-	"url": " https://rseng.github.io/software/repository/github/legolason/PyQSOFit",
-	"content": "A code to fit the spectrum of quasar"
+	"github/gabraham/flashpca": {
+	"id": "github/gabraham/flashpca",
+	"title": "github/gabraham/flashpca",
+	"url": " https://rseng.github.io/software/repository/github/gabraham/flashpca",
+	"content": "Fast Principal Component Analysis of Large-Scale Genome-Wide Data"
 	},
-	"github/gear-genomics/tracy": {
-	"id": "github/gear-genomics/tracy",
-	"title": "github/gear-genomics/tracy",
-	"url": " https://rseng.github.io/software/repository/github/gear-genomics/tracy",
-	"content": "Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files"
+	"github/ThomasMBury/ewstools": {
+	"id": "github/ThomasMBury/ewstools",
+	"title": "github/ThomasMBury/ewstools",
+	"url": " https://rseng.github.io/software/repository/github/ThomasMBury/ewstools",
+	"content": "Python package for early warning signals (EWS) of bifurcations in time series data."
 	},
-	"github/gear-genomics/dicey": {
-	"id": "github/gear-genomics/dicey",
-	"title": "github/gear-genomics/dicey",
-	"url": " https://rseng.github.io/software/repository/github/gear-genomics/dicey",
-	"content": "In-silico PCR, primer design and padlock design for in-situ sequencing"
+	"github/NOSALRO/robot_dart": {
+	"id": "github/NOSALRO/robot_dart",
+	"title": "github/NOSALRO/robot_dart",
+	"url": " https://rseng.github.io/software/repository/github/NOSALRO/robot_dart",
+	"content": "RobotDART: a versatile robot simulator for robotics and machine learning researchers"
 	},
-	"github/radiosunpy/RadioSunPy": {
-	"id": "github/radiosunpy/RadioSunPy",
-	"title": "github/radiosunpy/RadioSunPy",
-	"url": " https://rseng.github.io/software/repository/github/radiosunpy/RadioSunPy",
-	"content": "RATAN-600 radioastronomical solar data and methods Python library "
+	"github/gasparl/possa": {
+	"id": "github/gasparl/possa",
+	"title": "github/gasparl/possa",
+	"url": " https://rseng.github.io/software/repository/github/gasparl/possa",
+	"content": "POSSA: Power simulation for sequential analyses and multiple hypotheses."
 	},
-	"github/luispinos/Exploring-the-interest-for-specific-courses-bias-in-course-effect-modelling": {
-	"id": "github/luispinos/Exploring-the-interest-for-specific-courses-bias-in-course-effect-modelling",
-	"title": "github/luispinos/Exploring-the-interest-for-specific-courses-bias-in-course-effect-modelling",
-	"url": " https://rseng.github.io/software/repository/github/luispinos/Exploring-the-interest-for-specific-courses-bias-in-course-effect-modelling",
-	"content": "This project contains the R scripts needed to replicate the results for the conference paper: Modelling the effect of courses over soft skills: A simulation study, presented at AERA 2023 Chicago by Pinos Ullauri L.A., Fleury A., Van den Noortgate W., Lebis A., Vermeulen M., Karami A."
+	"github/IFB-ElixirFr/edam-browser": {
+	"id": "github/IFB-ElixirFr/edam-browser",
+	"title": "github/IFB-ElixirFr/edam-browser",
+	"url": " https://rseng.github.io/software/repository/github/IFB-ElixirFr/edam-browser",
+	"content": "Stand alone js browser for EDAM Ontology"
 	},
-	"github/Lyalpha/spalipy": {
-	"id": "github/Lyalpha/spalipy",
-	"title": "github/Lyalpha/spalipy",
-	"url": " https://rseng.github.io/software/repository/github/Lyalpha/spalipy",
-	"content": "Detection-based astronomical image registration."
+	"github/pyccel/pyccel": {
+	"id": "github/pyccel/pyccel",
+	"title": "github/pyccel/pyccel",
+	"url": " https://rseng.github.io/software/repository/github/pyccel/pyccel",
+	"content": "Python extension language using accelerators"
 	},
-	"github/equitable-equations/fqar": {
-	"id": "github/equitable-equations/fqar",
-	"title": "github/equitable-equations/fqar",
-	"url": " https://rseng.github.io/software/repository/github/equitable-equations/fqar",
-	"content": "The fqar package provides R tools for downloading and analyzing floristic quality assessment data from www.universalFQA.org"
+	"github/sdss/marvin": {
+	"id": "github/sdss/marvin",
+	"title": "github/sdss/marvin",
+	"url": " https://rseng.github.io/software/repository/github/sdss/marvin",
+	"content": "Data access and visualization for MaNGA. http://sdss-marvin.readthedocs.io/en/latest/"
 	},
-	"github/zhanghe9704/tpsa": {
-	"id": "github/zhanghe9704/tpsa",
-	"title": "github/zhanghe9704/tpsa",
-	"url": " https://rseng.github.io/software/repository/github/zhanghe9704/tpsa",
-	"content": "C++ and Python TPSA/DA codes"
+	"github/wpb-astro/MCSED": {
+	"id": "github/wpb-astro/MCSED",
+	"title": "github/wpb-astro/MCSED",
+	"url": " https://rseng.github.io/software/repository/github/wpb-astro/MCSED",
+	"content": "None"
 	},
-	"github/cancerit/alleleCount": {
-	"id": "github/cancerit/alleleCount",
-	"title": "github/cancerit/alleleCount",
-	"url": " https://rseng.github.io/software/repository/github/cancerit/alleleCount",
-	"content": "Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each allele [ACGT] at that location (given any filter settings)"
+	"github/aalhossary/pyemgpipeline": {
+	"id": "github/aalhossary/pyemgpipeline",
+	"title": "github/aalhossary/pyemgpipeline",
+	"url": " https://rseng.github.io/software/repository/github/aalhossary/pyemgpipeline",
+	"content": "None"
 	},
-	"github/pipliggins/EVolve": {
-	"id": "github/pipliggins/EVolve",
-	"title": "github/pipliggins/EVolve",
-	"url": " https://rseng.github.io/software/repository/github/pipliggins/EVolve",
-	"content": "An atmospheric growth and evolution model based on the EVo degassing model and FastChem 2.0"
+	"github/erf-model/ERF": {
+	"id": "github/erf-model/ERF",
+	"title": "github/erf-model/ERF",
+	"url": " https://rseng.github.io/software/repository/github/erf-model/ERF",
+	"content": "Energy Research and Forecasting Model"
 	},
-	"github/trygvrad/DF-XRM_viz": {
-	"id": "github/trygvrad/DF-XRM_viz",
-	"title": "github/trygvrad/DF-XRM_viz",
-	"url": " https://rseng.github.io/software/repository/github/trygvrad/DF-XRM_viz",
-	"content": "Visualization of DF-XRM"
+	"github/pennsignals/chime": {
+	"id": "github/pennsignals/chime",
+	"title": "github/pennsignals/chime",
+	"url": " https://rseng.github.io/software/repository/github/pennsignals/chime",
+	"content": "COVID-19 Hospital Impact Model for Epidemics"
 	},
-	"github/delve-team/delve": {
-	"id": "github/delve-team/delve",
-	"title": "github/delve-team/delve",
-	"url": " https://rseng.github.io/software/repository/github/delve-team/delve",
-	"content": "PyTorch model training and layer saturation monitor"
+	"github/ptaconet/bdd_rntaaf": {
+	"id": "github/ptaconet/bdd_rntaaf",
+	"title": "github/ptaconet/bdd_rntaaf",
+	"url": " https://rseng.github.io/software/repository/github/ptaconet/bdd_rntaaf",
+	"content": "Codes SQL de la première base de données relationelle de la Réserve Naturelle Nationale des Terres australes françaises"
 	},
-	"github/tacazares/SeedMatchR": {
-	"id": "github/tacazares/SeedMatchR",
-	"title": "github/tacazares/SeedMatchR",
-	"url": " https://rseng.github.io/software/repository/github/tacazares/SeedMatchR",
-	"content": "Off-target analysis of siRNA knock down paired with RNAseq"
+	"github/ptaconet/modisfast": {
+	"id": "github/ptaconet/modisfast",
+	"title": "github/ptaconet/modisfast",
+	"url": " https://rseng.github.io/software/repository/github/ptaconet/modisfast",
+	"content": "Fast and efficient access to MODIS, VIIRS and GPM Earth Observation data with R "
 	},
-	"github/AlexMaraio/WeakLensingQML": {
-	"id": "github/AlexMaraio/WeakLensingQML",
-	"title": "github/AlexMaraio/WeakLensingQML",
-	"url": " https://rseng.github.io/software/repository/github/AlexMaraio/WeakLensingQML",
-	"content": "Code applying the Quadratic Maximum Likelihood estimator to Weak Lensing"
+	"github/gmarcais/Jellyfish": {
+	"id": "github/gmarcais/Jellyfish",
+	"title": "github/gmarcais/Jellyfish",
+	"url": " https://rseng.github.io/software/repository/github/gmarcais/Jellyfish",
+	"content": "A fast multi-threaded k-mer counter"
 	},
-	"github/xinyiguan/py2lispIDyOM": {
-	"id": "github/xinyiguan/py2lispIDyOM",
-	"title": "github/xinyiguan/py2lispIDyOM",
-	"url": " https://rseng.github.io/software/repository/github/xinyiguan/py2lispIDyOM",
-	"content": "A Python package for IDyOM"
+	"github/gmarcais/Quorum": {
+	"id": "github/gmarcais/Quorum",
+	"title": "github/gmarcais/Quorum",
+	"url": " https://rseng.github.io/software/repository/github/gmarcais/Quorum",
+	"content": "QUality Optimized Reads from the University of Maryland"
 	},
-	"github/einsteinpy/einsteinpy": {
-	"id": "github/einsteinpy/einsteinpy",
-	"title": "github/einsteinpy/einsteinpy",
-	"url": " https://rseng.github.io/software/repository/github/einsteinpy/einsteinpy",
-	"content": "Repository for the EinsteinPy core package :rocket:"
+	"github/BioHPC/MegaD": {
+	"id": "github/BioHPC/MegaD",
+	"title": "github/BioHPC/MegaD",
+	"url": " https://rseng.github.io/software/repository/github/BioHPC/MegaD",
+	"content": "Deep learning for metagenomic sample classification"
 	},
-	"github/ntcockroft/STarFish": {
-	"id": "github/ntcockroft/STarFish",
-	"title": "github/ntcockroft/STarFish",
-	"url": " https://rseng.github.io/software/repository/github/ntcockroft/STarFish",
-	"content": "Tool for predicting the protein targets of bioactive small molecules"
+	"github/bhi-kimlab/StressGenePred": {
+	"id": "github/bhi-kimlab/StressGenePred",
+	"title": "github/bhi-kimlab/StressGenePred",
+	"url": " https://rseng.github.io/software/repository/github/bhi-kimlab/StressGenePred",
+	"content": "Stress predicting framework with microarray data based on CMCL and logical correlation model"
 	},
-	"github/smirarab/pasta": {
-	"id": "github/smirarab/pasta",
-	"title": "github/smirarab/pasta",
-	"url": " https://rseng.github.io/software/repository/github/smirarab/pasta",
-	"content": "PASTA (Practical Alignment using SATe and Transitivity) "
+	"github/icesat2py/icepyx": {
+	"id": "github/icesat2py/icepyx",
+	"title": "github/icesat2py/icepyx",
+	"url": " https://rseng.github.io/software/repository/github/icesat2py/icepyx",
+	"content": "Python tools for obtaining and working with ICESat-2 data"
 	},
-	"github/smirarab/sepp": {
-	"id": "github/smirarab/sepp",
-	"title": "github/smirarab/sepp",
-	"url": " https://rseng.github.io/software/repository/github/smirarab/sepp",
-	"content": "Ensemble of HMM methods (SEPP, TIPP, UPP)"
+	"github/sfeeney/ddspectra": {
+	"id": "github/sfeeney/ddspectra",
+	"title": "github/sfeeney/ddspectra",
+	"url": " https://rseng.github.io/software/repository/github/sfeeney/ddspectra",
+	"content": "SSSpaNG: Stellar Spectra as Sparse Non-Gaussian Processes"
 	},
-	"github/SeamusClarke/FragMent": {
-	"id": "github/SeamusClarke/FragMent",
-	"title": "github/SeamusClarke/FragMent",
-	"url": " https://rseng.github.io/software/repository/github/SeamusClarke/FragMent",
-	"content": "A collection of fragmentation techniques for studying filaments"
+	"github/sfeeney/hh0": {
+	"id": "github/sfeeney/hh0",
+	"title": "github/sfeeney/hh0",
+	"url": " https://rseng.github.io/software/repository/github/sfeeney/hh0",
+	"content": "Hierarchical Hubble Constant Inference"
 	},
-	"github/SeamusClarke/BTS": {
-	"id": "github/SeamusClarke/BTS",
-	"title": "github/SeamusClarke/BTS",
-	"url": " https://rseng.github.io/software/repository/github/SeamusClarke/BTS",
-	"content": "Behind The Spectrum (BTS) fitter "
+	"github/doriancazeneuve/ODNet": {
+	"id": "github/doriancazeneuve/ODNet",
+	"title": "github/doriancazeneuve/ODNet",
+	"url": " https://rseng.github.io/software/repository/github/doriancazeneuve/ODNet",
+	"content": "ODNet : Asteroid Occultation Detection Convolutional Neural Network"
 	},
-	"github/Open-ET/flux-data-qaqc": {
-	"id": "github/Open-ET/flux-data-qaqc",
-	"title": "github/Open-ET/flux-data-qaqc",
-	"url": " https://rseng.github.io/software/repository/github/Open-ET/flux-data-qaqc",
-	"content": "Energy Balance Closure Analysis and Eddy Flux Data Post-Processing"
+	"github/Narayana-Rao/SAR-tools": {
+	"id": "github/Narayana-Rao/SAR-tools",
+	"title": "github/Narayana-Rao/SAR-tools",
+	"url": " https://rseng.github.io/software/repository/github/Narayana-Rao/SAR-tools",
+	"content": "A QGIS  plugin to generate  polarimetric SAR descriptors."
 	},
-	"github/widdowquinn/pyani": {
-	"id": "github/widdowquinn/pyani",
-	"title": "github/widdowquinn/pyani",
-	"url": " https://rseng.github.io/software/repository/github/widdowquinn/pyani",
-	"content": "Application and Python module for average nucleotide identity analyses of microbes."
+	"github/starkit/wsynphot": {
+	"id": "github/starkit/wsynphot",
+	"title": "github/starkit/wsynphot",
+	"url": " https://rseng.github.io/software/repository/github/starkit/wsynphot",
+	"content": "Synthetic Photometry package using Quantities"
 	},
-	"github/MASILab/pyPheWAS": {
-	"id": "github/MASILab/pyPheWAS",
-	"title": "github/MASILab/pyPheWAS",
-	"url": " https://rseng.github.io/software/repository/github/MASILab/pyPheWAS",
-	"content": "MASI Lab Implementation of PheWAS in Python"
+	"github/KathrynJones1/catwoman": {
+	"id": "github/KathrynJones1/catwoman",
+	"title": "github/KathrynJones1/catwoman",
+	"url": " https://rseng.github.io/software/repository/github/KathrynJones1/catwoman",
+	"content": "A transit modelling Python package for asymmetric light curves"
 	},
-	"github/HorvathLab/ReQTL": {
-	"id": "github/HorvathLab/ReQTL",
-	"title": "github/HorvathLab/ReQTL",
-	"url": " https://rseng.github.io/software/repository/github/HorvathLab/ReQTL",
-	"content": "ReQTL: Identifying correlations between expressed SNVs and gene expression using RNA-sequencing data"
+	"github/UM-PEPL/HallThruster.jl": {
+	"id": "github/UM-PEPL/HallThruster.jl",
+	"title": "github/UM-PEPL/HallThruster.jl",
+	"url": " https://rseng.github.io/software/repository/github/UM-PEPL/HallThruster.jl",
+	"content": "An open-source fluid Hall thruster code"
 	},
-	"github/captain-exoplanet/misttborn": {
-	"id": "github/captain-exoplanet/misttborn",
-	"title": "github/captain-exoplanet/misttborn",
-	"url": " https://rseng.github.io/software/repository/github/captain-exoplanet/misttborn",
-	"content": "MISTTBORN exoplanet fitting code, and various associated codes"
+	"github/aobr/gsf": {
+	"id": "github/aobr/gsf",
+	"title": "github/aobr/gsf",
+	"url": " https://rseng.github.io/software/repository/github/aobr/gsf",
+	"content": "galactic structure finder"
 	},
-	"github/ashleefv/ACEInhibPKPD": {
-	"id": "github/ashleefv/ACEInhibPKPD",
-	"title": "github/ashleefv/ACEInhibPKPD",
-	"url": " https://rseng.github.io/software/repository/github/ashleefv/ACEInhibPKPD",
-	"content": "PKPD model for ACE inhibition; educational drug dosing app for treatment of high blood pressure"
+	"github/wiederm/transformato": {
+	"id": "github/wiederm/transformato",
+	"title": "github/wiederm/transformato",
+	"url": " https://rseng.github.io/software/repository/github/wiederm/transformato",
+	"content": "Set up relative free energy calculations using a common scaffold"
 	},
-	"github/exoml/plan-net": {
-	"id": "github/exoml/plan-net",
-	"title": "github/exoml/plan-net",
-	"url": " https://rseng.github.io/software/repository/github/exoml/plan-net",
-	"content": "An Ensemble of Bayesian Neural Networks for Exoplanetary Atmospheric Retrieval"
+	"github/leishenggit/CircleBase": {
+	"id": "github/leishenggit/CircleBase",
+	"title": "github/leishenggit/CircleBase",
+	"url": " https://rseng.github.io/software/repository/github/leishenggit/CircleBase",
+	"content": "An integrated resource and analysis platform for human eccDNAs"
 	},
-	"github/prmunday/Immunolyser": {
-	"id": "github/prmunday/Immunolyser",
-	"title": "github/prmunday/Immunolyser",
-	"url": " https://rseng.github.io/software/repository/github/prmunday/Immunolyser",
-	"content": "None"
+	"github/wwood/kingfisher-download": {
+	"id": "github/wwood/kingfisher-download",
+	"title": "github/wwood/kingfisher-download",
+	"url": " https://rseng.github.io/software/repository/github/wwood/kingfisher-download",
+	"content": "Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP."
 	},
-	"github/openmopac/MOPAC": {
-	"id": "github/openmopac/MOPAC",
-	"title": "github/openmopac/MOPAC",
-	"url": " https://rseng.github.io/software/repository/github/openmopac/MOPAC",
-	"content": "Molecular Orbital PACkage"
+	"github/csmsoftware/IMPaCTS": {
+	"id": "github/csmsoftware/IMPaCTS",
+	"title": "github/csmsoftware/IMPaCTS",
+	"url": " https://rseng.github.io/software/repository/github/csmsoftware/IMPaCTS",
+	"content": "Imperial Metabolic Profiling and Chemometrics Toolbox for Spectroscopy"
 	},
-	"github/Onogi/VIGoR": {
-	"id": "github/Onogi/VIGoR",
-	"title": "github/Onogi/VIGoR",
-	"url": " https://rseng.github.io/software/repository/github/Onogi/VIGoR",
-	"content": "Variational Bayesian Inference for Genome-Wide Regression"
+	"github/Xia-Yijie/Xponge": {
+	"id": "github/Xia-Yijie/Xponge",
+	"title": "github/Xia-Yijie/Xponge",
+	"url": " https://rseng.github.io/software/repository/github/Xia-Yijie/Xponge",
+	"content": "A lightweight and easy to customize python package to perform pre- and post-processing of molecular modelling"
 	},
-	"github/aadya940/chainopy": {
-	"id": "github/aadya940/chainopy",
-	"title": "github/aadya940/chainopy",
-	"url": " https://rseng.github.io/software/repository/github/aadya940/chainopy",
-	"content": "ChainoPy: A Python Library for Discrete Time Markov Chain based stochastic analysis"
+	"github/nh13/DWGSIM": {
+	"id": "github/nh13/DWGSIM",
+	"title": "github/nh13/DWGSIM",
+	"url": " https://rseng.github.io/software/repository/github/nh13/DWGSIM",
+	"content": "a whole genome simulator for next-generation sequencing based off of wgsim found in SAMtools, which was written by Heng Li, and forked from DNAA. It was modified to handle ABI SOLiD and Ion Torrent data, as well as various assumptions about aligners and positions of indels. Many new features have been subsequently added."
 	},
-	"github/Kuifje02/vrpy": {
-	"id": "github/Kuifje02/vrpy",
-	"title": "github/Kuifje02/vrpy",
-	"url": " https://rseng.github.io/software/repository/github/Kuifje02/vrpy",
-	"content": "A python framework for solving the VRP and its variants with column generation."
+	"github/CEMeNT-PSAAP/MCDC": {
+	"id": "github/CEMeNT-PSAAP/MCDC",
+	"title": "github/CEMeNT-PSAAP/MCDC",
+	"url": " https://rseng.github.io/software/repository/github/CEMeNT-PSAAP/MCDC",
+	"content": "MC/DC: Monte Carlo Dynamic Code"
 	},
-	"github/YeoLab/clipper": {
-	"id": "github/YeoLab/clipper",
-	"title": "github/YeoLab/clipper",
-	"url": " https://rseng.github.io/software/repository/github/YeoLab/clipper",
-	"content": "A tool to detect CLIP-seq peaks."
+	"github/nluetts/NoisySignalIntegration.jl": {
+	"id": "github/nluetts/NoisySignalIntegration.jl",
+	"title": "github/nluetts/NoisySignalIntegration.jl",
+	"url": " https://rseng.github.io/software/repository/github/nluetts/NoisySignalIntegration.jl",
+	"content": "None"
 	},
-	"github/YeoLab/FLARE": {
-	"id": "github/YeoLab/FLARE",
-	"title": "github/YeoLab/FLARE",
-	"url": " https://rseng.github.io/software/repository/github/YeoLab/FLARE",
-	"content": "RNA edit detection (SAILOR) and peak calling (FLARE)"
+	"github/918particle/AskaryanModule": {
+	"id": "github/918particle/AskaryanModule",
+	"title": "github/918particle/AskaryanModule",
+	"url": " https://rseng.github.io/software/repository/github/918particle/AskaryanModule",
+	"content": "None"
 	},
-	"github/grimme-lab/xtb": {
-	"id": "github/grimme-lab/xtb",
-	"title": "github/grimme-lab/xtb",
-	"url": " https://rseng.github.io/software/repository/github/grimme-lab/xtb",
-	"content": "Semiempirical Extended Tight-Binding Program Package"
+	"github/vallis/mc3pta": {
+	"id": "github/vallis/mc3pta",
+	"title": "github/vallis/mc3pta",
+	"url": " https://rseng.github.io/software/repository/github/vallis/mc3pta",
+	"content": "Bayesian-inference tools for pulsar-timing-array data"
 	},
-	"github/oneilsh/tidytensor": {
-	"id": "github/oneilsh/tidytensor",
-	"title": "github/oneilsh/tidytensor",
-	"url": " https://rseng.github.io/software/repository/github/oneilsh/tidytensor",
-	"content": "Utilities for multidimensional arrays as named hierarchical structures"
+	"github/vallis/libstempo": {
+	"id": "github/vallis/libstempo",
+	"title": "github/vallis/libstempo",
+	"url": " https://rseng.github.io/software/repository/github/vallis/libstempo",
+	"content": "libstempo — a Python wrapper for tempo2"
 	},
-	"github/karel-brinda/ococo": {
-	"id": "github/karel-brinda/ococo",
-	"title": "github/karel-brinda/ococo",
-	"url": " https://rseng.github.io/software/repository/github/karel-brinda/ococo",
-	"content": "Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream."
+	"github/retostauffer/python-colorspace": {
+	"id": "github/retostauffer/python-colorspace",
+	"title": "github/retostauffer/python-colorspace",
+	"url": " https://rseng.github.io/software/repository/github/retostauffer/python-colorspace",
+	"content": "Python colorspace implementation. Documentation available on https://retostauffer.github.io/python-colorspace/. The latest release is available via the Python Package Index (PyPI) via https://pypi.org/project/colorspace/"
 	},
-	"github/linksmart/thing-directory": {
-	"id": "github/linksmart/thing-directory",
-	"title": "github/linksmart/thing-directory",
-	"url": " https://rseng.github.io/software/repository/github/linksmart/thing-directory",
-	"content": "Directory of Web of Things (WoT) Thing Descriptions"
+	"github/trinotate/trinotatehub.io": {
+	"id": "github/trinotate/trinotatehub.io",
+	"title": "github/trinotate/trinotatehub.io",
+	"url": " https://rseng.github.io/software/repository/github/trinotate/trinotatehub.io",
+	"content": "a comprehensive annotation suite designed for automatic functional annotation of transcriptomes, particularly de novo assembled transcriptomes, from model or non-model organisms."
 	},
-	"github/astro-group-bristol/Gradus.jl": {
-	"id": "github/astro-group-bristol/Gradus.jl",
-	"title": "github/astro-group-bristol/Gradus.jl",
-	"url": " https://rseng.github.io/software/repository/github/astro-group-bristol/Gradus.jl",
-	"content": "Extensible spacetime agnostic general relativistic ray-tracing (GRRT)."
+	"github/sjteresi/TE_Density": {
+	"id": "github/sjteresi/TE_Density",
+	"title": "github/sjteresi/TE_Density",
+	"url": " https://rseng.github.io/software/repository/github/sjteresi/TE_Density",
+	"content": "Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4"
 	},
-	"github/lh3/minimap2": {
-	"id": "github/lh3/minimap2",
-	"title": "github/lh3/minimap2",
-	"url": " https://rseng.github.io/software/repository/github/lh3/minimap2",
-	"content": "A versatile pairwise aligner for genomic and spliced nucleotide sequences"
+	"github/rksyouyou/SASOM-analysis": {
+	"id": "github/rksyouyou/SASOM-analysis",
+	"title": "github/rksyouyou/SASOM-analysis",
+	"url": " https://rseng.github.io/software/repository/github/rksyouyou/SASOM-analysis",
+	"content": "code and data for real data analysis in SASOM paper"
 	},
-	"github/lh3/bgt": {
-	"id": "github/lh3/bgt",
-	"title": "github/lh3/bgt",
-	"url": " https://rseng.github.io/software/repository/github/lh3/bgt",
-	"content": "Flexible genotype query among 30,000+ samples whole-genome"
+	"github/mbhall88/rasusa": {
+	"id": "github/mbhall88/rasusa",
+	"title": "github/mbhall88/rasusa",
+	"url": " https://rseng.github.io/software/repository/github/mbhall88/rasusa",
+	"content": "Randomly subsample sequencing reads to a specified coverage"
 	},
-	"github/lh3/seqtk": {
-	"id": "github/lh3/seqtk",
-	"title": "github/lh3/seqtk",
-	"url": " https://rseng.github.io/software/repository/github/lh3/seqtk",
-	"content": "Toolkit for processing sequences in FASTA/Q formats"
+	"github/samaygarg/fuelcell": {
+	"id": "github/samaygarg/fuelcell",
+	"title": "github/samaygarg/fuelcell",
+	"url": " https://rseng.github.io/software/repository/github/samaygarg/fuelcell",
+	"content": "Electrochemical data analysis package"
 	},
-	"github/lh3/fermi-lite": {
-	"id": "github/lh3/fermi-lite",
-	"title": "github/lh3/fermi-lite",
-	"url": " https://rseng.github.io/software/repository/github/lh3/fermi-lite",
-	"content": "Standalone C library for assembling Illumina short reads in small regions"
+	"github/FredHutch/SEACR": {
+	"id": "github/FredHutch/SEACR",
+	"title": "github/FredHutch/SEACR",
+	"url": " https://rseng.github.io/software/repository/github/FredHutch/SEACR",
+	"content": "SEACR: Sparse Enrichment Analysis for CUT&amp;RUN"
 	},
-	"github/lh3/wgsim": {
-	"id": "github/lh3/wgsim",
-	"title": "github/lh3/wgsim",
-	"url": " https://rseng.github.io/software/repository/github/lh3/wgsim",
-	"content": "Reads simulator"
+	"github/tvwenger/kinematic_scaleheight": {
+	"id": "github/tvwenger/kinematic_scaleheight",
+	"title": "github/tvwenger/kinematic_scaleheight",
+	"url": " https://rseng.github.io/software/repository/github/tvwenger/kinematic_scaleheight",
+	"content": "Use MCMC methods to kinematically estimate the vertical distribution of clouds in the Galactic plane"
 	},
-	"github/lh3/bioawk": {
-	"id": "github/lh3/bioawk",
-	"title": "github/lh3/bioawk",
-	"url": " https://rseng.github.io/software/repository/github/lh3/bioawk",
-	"content": "BWK awk modified for biological data"
+	"github/tvwenger/tmbidl": {
+	"id": "github/tvwenger/tmbidl",
+	"title": "github/tvwenger/tmbidl",
+	"url": " https://rseng.github.io/software/repository/github/tvwenger/tmbidl",
+	"content": "TMBIDL - Single Dish Radio Astronomy Data Reduction Package"
 	},
-	"github/lh3/miniasm": {
-	"id": "github/lh3/miniasm",
-	"title": "github/lh3/miniasm",
-	"url": " https://rseng.github.io/software/repository/github/lh3/miniasm",
-	"content": "Ultrafast de novo assembly for long noisy reads (though having no consensus step)"
+	"github/tvwenger/kd": {
+	"id": "github/tvwenger/kd",
+	"title": "github/tvwenger/kd",
+	"url": " https://rseng.github.io/software/repository/github/tvwenger/kd",
+	"content": "Utilities to calculate kinematic distances"
 	},
-	"github/lh3/bfc": {
-	"id": "github/lh3/bfc",
-	"title": "github/lh3/bfc",
-	"url": " https://rseng.github.io/software/repository/github/lh3/bfc",
-	"content": "High-performance error correction for Illumina resequencing data"
+	"github/tvwenger/bayes_spec": {
+	"id": "github/tvwenger/bayes_spec",
+	"title": "github/tvwenger/bayes_spec",
+	"url": " https://rseng.github.io/software/repository/github/tvwenger/bayes_spec",
+	"content": "A Bayesian Spectral Line Modeling Framework"
 	},
-	"github/lh3/bedtk": {
-	"id": "github/lh3/bedtk",
-	"title": "github/lh3/bedtk",
-	"url": " https://rseng.github.io/software/repository/github/lh3/bedtk",
-	"content": "A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)"
+	"github/tvwenger/HII-Region-Models": {
+	"id": "github/tvwenger/HII-Region-Models",
+	"title": "github/tvwenger/HII-Region-Models",
+	"url": " https://rseng.github.io/software/repository/github/tvwenger/HII-Region-Models",
+	"content": "None"
 	},
-	"github/NIFTI-Imaging/nifti_clib": {
-	"id": "github/NIFTI-Imaging/nifti_clib",
-	"title": "github/NIFTI-Imaging/nifti_clib",
-	"url": " https://rseng.github.io/software/repository/github/NIFTI-Imaging/nifti_clib",
-	"content": "C libraries for NIFTI support"
+	"github/tvwenger/hii-region-kinematics": {
+	"id": "github/tvwenger/hii-region-kinematics",
+	"title": "github/tvwenger/hii-region-kinematics",
+	"url": " https://rseng.github.io/software/repository/github/tvwenger/hii-region-kinematics",
+	"content": "Radio recombination line observations of simulated HII regions with various internal kinematic structure"
 	},
-	"github/hjens/lasso_spectra": {
-	"id": "github/hjens/lasso_spectra",
-	"title": "github/hjens/lasso_spectra",
-	"url": " https://rseng.github.io/software/repository/github/hjens/lasso_spectra",
-	"content": "Functions for predicting properties from galaxy spectra, using Lasso regression"
+	"github/tvwenger/millennium-tap-query": {
+	"id": "github/tvwenger/millennium-tap-query",
+	"title": "github/tvwenger/millennium-tap-query",
+	"url": " https://rseng.github.io/software/repository/github/tvwenger/millennium-tap-query",
+	"content": "A Python Tool to Query the Millennium Simulation UWS/TAP client"
 	},
-	"github/JuliaGeometry/DelaunayTriangulation.jl": {
-	"id": "github/JuliaGeometry/DelaunayTriangulation.jl",
-	"title": "github/JuliaGeometry/DelaunayTriangulation.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaGeometry/DelaunayTriangulation.jl",
-	"content": "DelaunayTriangulation.jl: A Julia package for Delaunay triangulations and Voronoi tessellations in the plane"
+	"github/tvwenger/wisp": {
+	"id": "github/tvwenger/wisp",
+	"title": "github/tvwenger/wisp",
+	"url": " https://rseng.github.io/software/repository/github/tvwenger/wisp",
+	"content": "WISP: Wenger Interferometry Software Package"
 	},
-	"github/AndrewAnnex/SpiceyPy": {
-	"id": "github/AndrewAnnex/SpiceyPy",
-	"title": "github/AndrewAnnex/SpiceyPy",
-	"url": " https://rseng.github.io/software/repository/github/AndrewAnnex/SpiceyPy",
-	"content": "SpiceyPy: a Pythonic Wrapper for the SPICE Toolkit."
+	"github/Cristianetaniguti/Reads2Map": {
+	"id": "github/Cristianetaniguti/Reads2Map",
+	"title": "github/Cristianetaniguti/Reads2Map",
+	"url": " https://rseng.github.io/software/repository/github/Cristianetaniguti/Reads2Map",
+	"content": "WDL workflows to build genetic maps from sequencing reads"
 	},
-	"github/ec-jrc/nrt": {
-	"id": "github/ec-jrc/nrt",
-	"title": "github/ec-jrc/nrt",
-	"url": " https://rseng.github.io/software/repository/github/ec-jrc/nrt",
-	"content": "Near Real Time monitoring of satellite image time-series"
+	"github/FreBio/komics": {
+	"id": "github/FreBio/komics",
+	"title": "github/FreBio/komics",
+	"url": " https://rseng.github.io/software/repository/github/FreBio/komics",
+	"content": "Kinetoplast genOMICS"
 	},
-	"github/cbielow/PTXQC": {
-	"id": "github/cbielow/PTXQC",
-	"title": "github/cbielow/PTXQC",
-	"url": " https://rseng.github.io/software/repository/github/cbielow/PTXQC",
-	"content": "A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant"
+	"github/LMBooth/pybci": {
+	"id": "github/LMBooth/pybci",
+	"title": "github/LMBooth/pybci",
+	"url": " https://rseng.github.io/software/repository/github/LMBooth/pybci",
+	"content": "Create real-time BCI&#39;s with the LSL, PyTorch, SKLearn and TensorFlow packages."
 	},
-	"github/fred3m/toyz": {
-	"id": "github/fred3m/toyz",
-	"title": "github/fred3m/toyz",
-	"url": " https://rseng.github.io/software/repository/github/fred3m/toyz",
-	"content": "Toyz for Data Analysis and Reduction"
+	"github/HuttleyLab/scitrack": {
+	"id": "github/HuttleyLab/scitrack",
+	"title": "github/HuttleyLab/scitrack",
+	"url": " https://rseng.github.io/software/repository/github/HuttleyLab/scitrack",
+	"content": "library aimed at scientists who want a simple tool to help log research computations"
 	},
-	"github/DESI-UR/VAST": {
-	"id": "github/DESI-UR/VAST",
-	"title": "github/DESI-UR/VAST",
-	"url": " https://rseng.github.io/software/repository/github/DESI-UR/VAST",
-	"content": "Void Analysis Software Toolkit"
+	"github/NERDSITU/superblockify": {
+	"id": "github/NERDSITU/superblockify",
+	"title": "github/NERDSITU/superblockify",
+	"url": " https://rseng.github.io/software/repository/github/NERDSITU/superblockify",
+	"content": "Source code for superblockify"
 	},
-	"github/ggciag/mandyoc": {
-	"id": "github/ggciag/mandyoc",
-	"title": "github/ggciag/mandyoc",
-	"url": " https://rseng.github.io/software/repository/github/ggciag/mandyoc",
-	"content": "MANDYOC is a finite element code written on top of the PETSc library  to simulate thermo-chemical convection of the Earth&#39;s mantle"
+	"github/mudit-jain90/i-SPin": {
+	"id": "github/mudit-jain90/i-SPin",
+	"title": "github/mudit-jain90/i-SPin",
+	"url": " https://rseng.github.io/software/repository/github/mudit-jain90/i-SPin",
+	"content": "A code to simulate multi-component Schrodinger systems (with/without gravity + with/without self interactions) obeying SO(n) symmetry"
 	},
-	"github/ropensci-review-tools/autotest": {
-	"id": "github/ropensci-review-tools/autotest",
-	"title": "github/ropensci-review-tools/autotest",
-	"url": " https://rseng.github.io/software/repository/github/ropensci-review-tools/autotest",
-	"content": "Automatic testing of R packages"
+	"github/abrupt-climate/hyper-canny": {
+	"id": "github/abrupt-climate/hyper-canny",
+	"title": "github/abrupt-climate/hyper-canny",
+	"url": " https://rseng.github.io/software/repository/github/abrupt-climate/hyper-canny",
+	"content": "High dimensional Canny edge detection"
 	},
-	"github/ropensci-review-tools/pkgstats": {
-	"id": "github/ropensci-review-tools/pkgstats",
-	"title": "github/ropensci-review-tools/pkgstats",
-	"url": " https://rseng.github.io/software/repository/github/ropensci-review-tools/pkgstats",
-	"content": "Historical statistics of every R package ever"
+	"github/jstuecker/adiabatic-tides": {
+	"id": "github/jstuecker/adiabatic-tides",
+	"title": "github/jstuecker/adiabatic-tides",
+	"url": " https://rseng.github.io/software/repository/github/jstuecker/adiabatic-tides",
+	"content": "Code for evaluating the tidal stripping of dark matter (sub)haloes in the adiabatic limit"
 	},
-	"github/ropensci-review-tools/roreviewapi": {
-	"id": "github/ropensci-review-tools/roreviewapi",
-	"title": "github/ropensci-review-tools/roreviewapi",
-	"url": " https://rseng.github.io/software/repository/github/ropensci-review-tools/roreviewapi",
-	"content": "API endpoint for package reviews via ropensci-review-bot"
+	"github/fjankowsk/scatfit": {
+	"id": "github/fjankowsk/scatfit",
+	"title": "github/fjankowsk/scatfit",
+	"url": " https://rseng.github.io/software/repository/github/fjankowsk/scatfit",
+	"content": "Scattering fits of Fast Radio Burst and pulsar data."
 	},
-	"github/ropensci-review-tools/pkgcheck": {
-	"id": "github/ropensci-review-tools/pkgcheck",
-	"title": "github/ropensci-review-tools/pkgcheck",
-	"url": " https://rseng.github.io/software/repository/github/ropensci-review-tools/pkgcheck",
-	"content": "Check whether a package is ready for submission to rOpenSci&#39;s peer-review system"
+	"github/radicamc/exoTEDRF": {
+	"id": "github/radicamc/exoTEDRF",
+	"title": "github/radicamc/exoTEDRF",
+	"url": " https://rseng.github.io/software/repository/github/radicamc/exoTEDRF",
+	"content": "Tools for end-to-end reduction of JWST exoplanet observations"
 	},
-	"github/ropensci-review-tools/srr": {
-	"id": "github/ropensci-review-tools/srr",
-	"title": "github/ropensci-review-tools/srr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci-review-tools/srr",
-	"content": "Software Review Roclets"
+	"github/mp3guy/ElasticFusion": {
+	"id": "github/mp3guy/ElasticFusion",
+	"title": "github/mp3guy/ElasticFusion",
+	"url": " https://rseng.github.io/software/repository/github/mp3guy/ElasticFusion",
+	"content": "Real-time dense visual SLAM system"
 	},
-	"github/tesselle/aion": {
-	"id": "github/tesselle/aion",
-	"title": "github/tesselle/aion",
-	"url": " https://rseng.github.io/software/repository/github/tesselle/aion",
-	"content": ":stopwatch: Archaeological Time Series"
+	"github/TORCH-Consortium/MAGMA": {
+	"id": "github/TORCH-Consortium/MAGMA",
+	"title": "github/TORCH-Consortium/MAGMA",
+	"url": " https://rseng.github.io/software/repository/github/TORCH-Consortium/MAGMA",
+	"content": "A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research"
 	},
-	"github/jdber1/opendrop": {
-	"id": "github/jdber1/opendrop",
-	"title": "github/jdber1/opendrop",
-	"url": " https://rseng.github.io/software/repository/github/jdber1/opendrop",
-	"content": "OpenDrop pendant drop tensiometry software"
+	"github/iomega/spec2vec": {
+	"id": "github/iomega/spec2vec",
+	"title": "github/iomega/spec2vec",
+	"url": " https://rseng.github.io/software/repository/github/iomega/spec2vec",
+	"content": "Word2Vec based similarity measure of mass spectrometry data."
 	},
-	"github/JinxinMonash/PhageGE": {
-	"id": "github/JinxinMonash/PhageGE",
-	"title": "github/JinxinMonash/PhageGE",
-	"url": " https://rseng.github.io/software/repository/github/JinxinMonash/PhageGE",
-	"content": "Phage Genome Exploration"
+	"github/iomega/paired-data-form": {
+	"id": "github/iomega/paired-data-form",
+	"title": "github/iomega/paired-data-form",
+	"url": " https://rseng.github.io/software/repository/github/iomega/paired-data-form",
+	"content": "Linking mas spectra and genomic information to discover new chemistry"
 	},
-	"github/azizka/IUCNN": {
-	"id": "github/azizka/IUCNN",
-	"title": "github/azizka/IUCNN",
-	"url": " https://rseng.github.io/software/repository/github/azizka/IUCNN",
-	"content": " Train neural networks based on geographic species occurrences, environmental data and existing IUCN Red List assessments to predict the conservation status of &#34;Not Evaluated&#34; or &#34;Data Deficient&#34; species, for any taxon or geographic region of interest. https://iucnn.github.io/IUCNN/"
+	"github/iomega/zenodo-upload": {
+	"id": "github/iomega/zenodo-upload",
+	"title": "github/iomega/zenodo-upload",
+	"url": " https://rseng.github.io/software/repository/github/iomega/zenodo-upload",
+	"content": "JS package to create a new version of a Zenodo upload with a file"
 	},
-	"github/xmuyulab/DreamDIA-XMBD": {
-	"id": "github/xmuyulab/DreamDIA-XMBD",
-	"title": "github/xmuyulab/DreamDIA-XMBD",
-	"url": " https://rseng.github.io/software/repository/github/xmuyulab/DreamDIA-XMBD",
-	"content": "Software for data-independent acquisition (DIA) proteomic data processing with deep representation features."
+	"github/TinkerTools/Tinker-HP": {
+	"id": "github/TinkerTools/Tinker-HP",
+	"title": "github/TinkerTools/Tinker-HP",
+	"url": " https://rseng.github.io/software/repository/github/TinkerTools/Tinker-HP",
+	"content": "Tinker-HP: High-Performance Massively Parallel Evolution of Tinker on CPUs &amp; GPUs"
 	},
-	"github/jonschwenk/RivGraph": {
-	"id": "github/jonschwenk/RivGraph",
-	"title": "github/jonschwenk/RivGraph",
-	"url": " https://rseng.github.io/software/repository/github/jonschwenk/RivGraph",
-	"content": "Extracting and quantifying graphical representations of river and delta channel networks from binary masks"
+	"github/TinkerTools/tinker9": {
+	"id": "github/TinkerTools/tinker9",
+	"title": "github/TinkerTools/tinker9",
+	"url": " https://rseng.github.io/software/repository/github/TinkerTools/tinker9",
+	"content": "Tinker9: Next Generation of Tinker with GPU Support"
 	},
-	"github/statsmodels/statsmodels": {
-	"id": "github/statsmodels/statsmodels",
-	"title": "github/statsmodels/statsmodels",
-	"url": " https://rseng.github.io/software/repository/github/statsmodels/statsmodels",
-	"content": "Statsmodels: statistical modeling and econometrics in Python"
+	"github/ShixiangWang/sigminer": {
+	"id": "github/ShixiangWang/sigminer",
+	"title": "github/ShixiangWang/sigminer",
+	"url": " https://rseng.github.io/software/repository/github/ShixiangWang/sigminer",
+	"content": "🌲 An easy-to-use and scalable toolkit for genomic alteration (mutational) signature analysis and visualization in R"
 	},
-	"github/brettc/partitionfinder": {
-	"id": "github/brettc/partitionfinder",
-	"title": "github/brettc/partitionfinder",
-	"url": " https://rseng.github.io/software/repository/github/brettc/partitionfinder",
-	"content": "PartitionFinder discovers optimal partitioning schemes for DNA sequences."
+	"github/PEREGRINE-GW/saqqara": {
+	"id": "github/PEREGRINE-GW/saqqara",
+	"title": "github/PEREGRINE-GW/saqqara",
+	"url": " https://rseng.github.io/software/repository/github/PEREGRINE-GW/saqqara",
+	"content": " A simulation-based Inference (SBI) library designed for stochastic gravitational wave background data analysis"
 	},
-	"github/INCF/one_click": {
-	"id": "github/INCF/one_click",
-	"title": "github/INCF/one_click",
-	"url": " https://rseng.github.io/software/repository/github/INCF/one_click",
-	"content": "One Click Sharing"
+	"github/PEREGRINE-GW/peregrine": {
+	"id": "github/PEREGRINE-GW/peregrine",
+	"title": "github/PEREGRINE-GW/peregrine",
+	"url": " https://rseng.github.io/software/repository/github/PEREGRINE-GW/peregrine",
+	"content": "A simulation-based Inference (SBI) library designed to perform analysis on a wide class of gravitational wave signals"
 	},
-	"github/seap-udea/iWander": {
-	"id": "github/seap-udea/iWander",
-	"title": "github/seap-udea/iWander",
-	"url": " https://rseng.github.io/software/repository/github/seap-udea/iWander",
-	"content": "Dynamics of Interstellar Wanderers"
+	"github/MDAnalysis/mdanalysis": {
+	"id": "github/MDAnalysis/mdanalysis",
+	"title": "github/MDAnalysis/mdanalysis",
+	"url": " https://rseng.github.io/software/repository/github/MDAnalysis/mdanalysis",
+	"content": "MDAnalysis is a Python library to analyze molecular dynamics trajectories."
 	},
-	"github/qtltools/qtltools": {
-	"id": "github/qtltools/qtltools",
-	"title": "github/qtltools/qtltools",
-	"url": " https://rseng.github.io/software/repository/github/qtltools/qtltools",
-	"content": "A complete tool set for molecular QTL discovery and analysis"
+	"github/Jammy2211/PyAutoCTI": {
+	"id": "github/Jammy2211/PyAutoCTI",
+	"title": "github/Jammy2211/PyAutoCTI",
+	"url": " https://rseng.github.io/software/repository/github/Jammy2211/PyAutoCTI",
+	"content": "PyAutoCTI: Charge Transfer Inefficiency Calibration"
 	},
-	"github/yanzhanglab/Graph2GO": {
-	"id": "github/yanzhanglab/Graph2GO",
-	"title": "github/yanzhanglab/Graph2GO",
-	"url": " https://rseng.github.io/software/repository/github/yanzhanglab/Graph2GO",
-	"content": "Graph-based representation learning method for protein function prediction"
+	"github/Jammy2211/PyAutoGalaxy": {
+	"id": "github/Jammy2211/PyAutoGalaxy",
+	"title": "github/Jammy2211/PyAutoGalaxy",
+	"url": " https://rseng.github.io/software/repository/github/Jammy2211/PyAutoGalaxy",
+	"content": "PyAutoGalaxy: Open-Source Multiwavelength Galaxy Structure &amp; Morphology"
 	},
-	"github/nliulab/HRnV-Calc": {
-	"id": "github/nliulab/HRnV-Calc",
-	"title": "github/nliulab/HRnV-Calc",
-	"url": " https://rseng.github.io/software/repository/github/nliulab/HRnV-Calc",
-	"content": "HRnV-Calc software for heart rate n-variability and heart rate variability analysis"
+	"github/Jammy2211/PyAutoLens": {
+	"id": "github/Jammy2211/PyAutoLens",
+	"title": "github/Jammy2211/PyAutoLens",
+	"url": " https://rseng.github.io/software/repository/github/Jammy2211/PyAutoLens",
+	"content": "PyAutoLens: Open Source Strong Gravitational Lensing"
 	},
-	"github/xCDAT/xcdat": {
-	"id": "github/xCDAT/xcdat",
-	"title": "github/xCDAT/xcdat",
-	"url": " https://rseng.github.io/software/repository/github/xCDAT/xcdat",
-	"content": "An extension of xarray for climate data analysis on structured grids."
+	"github/bblodfon/emba": {
+	"id": "github/bblodfon/emba",
+	"title": "github/bblodfon/emba",
+	"url": " https://rseng.github.io/software/repository/github/bblodfon/emba",
+	"content": "Ensemble Model Biomarker Analysis R package"
 	},
-	"github/simpeg/aurora": {
-	"id": "github/simpeg/aurora",
-	"title": "github/simpeg/aurora",
-	"url": " https://rseng.github.io/software/repository/github/simpeg/aurora",
-	"content": "software for processing natural source electromagnetic data "
+	"github/jollejolles/pirecorder": {
+	"id": "github/jollejolles/pirecorder",
+	"title": "github/jollejolles/pirecorder",
+	"url": " https://rseng.github.io/software/repository/github/jollejolles/pirecorder",
+	"content": "Controlled and automated image and video recording with the raspberry pi"
 	},
-	"github/PyFstat/PyFstat": {
-	"id": "github/PyFstat/PyFstat",
-	"title": "github/PyFstat/PyFstat",
-	"url": " https://rseng.github.io/software/repository/github/PyFstat/PyFstat",
-	"content": "a python package for gravitational wave analysis with the F-statistic"
+	"github/HalHaggard/EARL": {
+	"id": "github/HalHaggard/EARL",
+	"title": "github/HalHaggard/EARL",
+	"url": " https://rseng.github.io/software/repository/github/HalHaggard/EARL",
+	"content": "Exoplanet Analytic Reflected Lightcurves (EARL): This Mathematica code allows you to compute the analytic form of a reflected lightcurve given a spherical harmonic decomposition of the planet albedo map and the viewing and orbital geometries. The theoretical foundation for this code is laid out in the paper &#34;Analytic Reflected Lightcurves for Exoplanets&#34; by Hal M. Haggard and Nicolas B. Cowan, which can be found the arXiv."
 	},
-	"github/jhkorhonen/MOODS": {
-	"id": "github/jhkorhonen/MOODS",
-	"title": "github/jhkorhonen/MOODS",
-	"url": " https://rseng.github.io/software/repository/github/jhkorhonen/MOODS",
-	"content": "MOODS: Motif Occurrence Detection Suite"
+	"github/EnsembleGovServices/kamodo-core": {
+	"id": "github/EnsembleGovServices/kamodo-core",
+	"title": "github/EnsembleGovServices/kamodo-core",
+	"url": " https://rseng.github.io/software/repository/github/EnsembleGovServices/kamodo-core",
+	"content": "A functional API for space weather models and data"
 	},
-	"github/suchanek/proteusPy": {
-	"id": "github/suchanek/proteusPy",
-	"title": "github/suchanek/proteusPy",
-	"url": " https://rseng.github.io/software/repository/github/suchanek/proteusPy",
-	"content": "A package for the modeling and analysis of proteins of known structure"
+	"github/danielenricocahall/elephas": {
+	"id": "github/danielenricocahall/elephas",
+	"title": "github/danielenricocahall/elephas",
+	"url": " https://rseng.github.io/software/repository/github/danielenricocahall/elephas",
+	"content": "Distributed Deep learning with Keras &amp; Spark"
 	},
-	"github/trixi-framework/HOHQMesh": {
-	"id": "github/trixi-framework/HOHQMesh",
-	"title": "github/trixi-framework/HOHQMesh",
-	"url": " https://rseng.github.io/software/repository/github/trixi-framework/HOHQMesh",
-	"content": "High Order Hex-Quad Mesh (HOHQMesh) package to automatically generate all-quadrilateral meshes with high order boundary information."
+	"github/dianna-ai/dianna": {
+	"id": "github/dianna-ai/dianna",
+	"title": "github/dianna-ai/dianna",
+	"url": " https://rseng.github.io/software/repository/github/dianna-ai/dianna",
+	"content": "Deep Insight And Neural Network Analysis"
 	},
-	"github/phelelani/nf-rnaSeqMetagen": {
-	"id": "github/phelelani/nf-rnaSeqMetagen",
-	"title": "github/phelelani/nf-rnaSeqMetagen",
-	"url": " https://rseng.github.io/software/repository/github/phelelani/nf-rnaSeqMetagen",
-	"content": "Metagenomics pipeline"
+	"github/DedalusProject/eigentools": {
+	"id": "github/DedalusProject/eigentools",
+	"title": "github/DedalusProject/eigentools",
+	"url": " https://rseng.github.io/software/repository/github/DedalusProject/eigentools",
+	"content": "The Eigentools package for Dedalus"
 	},
-	"github/phelelani/nf-rnaSeqCount": {
-	"id": "github/phelelani/nf-rnaSeqCount",
-	"title": "github/phelelani/nf-rnaSeqCount",
-	"url": " https://rseng.github.io/software/repository/github/phelelani/nf-rnaSeqCount",
-	"content": "Assembly and differential expression analysis"
+	"github/rbturnbull/ausdex": {
+	"id": "github/rbturnbull/ausdex",
+	"title": "github/rbturnbull/ausdex",
+	"url": " https://rseng.github.io/software/repository/github/rbturnbull/ausdex",
+	"content": "A Python package for adjusting Australian dollars for inflation"
 	},
-	"github/VasilyKokorev/stardust": {
-	"id": "github/VasilyKokorev/stardust",
-	"title": "github/VasilyKokorev/stardust",
-	"url": " https://rseng.github.io/software/repository/github/VasilyKokorev/stardust",
-	"content": "Stardust - SED fitting code for UV-optical and FIR."
+	"github/pw31/GGchem": {
+	"id": "github/pw31/GGchem",
+	"title": "github/pw31/GGchem",
+	"url": " https://rseng.github.io/software/repository/github/pw31/GGchem",
+	"content": "fast thermo-chemical equilibrium code with or without equilibrium condensation down to 100K "
 	},
-	"github/jianghuaijie/scLRTC": {
-	"id": "github/jianghuaijie/scLRTC",
-	"title": "github/jianghuaijie/scLRTC",
-	"url": " https://rseng.github.io/software/repository/github/jianghuaijie/scLRTC",
-	"content": "scLRTC:imputation for single-cell RNA-seq data via low rank tensor completion"
+	"github/jenniferlu717/Bracken": {
+	"id": "github/jenniferlu717/Bracken",
+	"title": "github/jenniferlu717/Bracken",
+	"url": " https://rseng.github.io/software/repository/github/jenniferlu717/Bracken",
+	"content": "(Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample."
 	},
-	"github/erf-model/ERF": {
-	"id": "github/erf-model/ERF",
-	"title": "github/erf-model/ERF",
-	"url": " https://rseng.github.io/software/repository/github/erf-model/ERF",
-	"content": "Energy Research and Forecasting Model"
+	"github/cagrikymk/JAX-ReaxFF": {
+	"id": "github/cagrikymk/JAX-ReaxFF",
+	"title": "github/cagrikymk/JAX-ReaxFF",
+	"url": " https://rseng.github.io/software/repository/github/cagrikymk/JAX-ReaxFF",
+	"content": "JAX-ReaxFF: A Gradient Based Framework for Extremely Fast Optimization of Reactive Force Fields"
 	},
-	"github/yi-jia-li/cue": {
-	"id": "github/yi-jia-li/cue",
-	"title": "github/yi-jia-li/cue",
-	"url": " https://rseng.github.io/software/repository/github/yi-jia-li/cue",
-	"content": "nebular emission modeling"
+	"github/pierrepeterlongo/back_to_sequences": {
+	"id": "github/pierrepeterlongo/back_to_sequences",
+	"title": "github/pierrepeterlongo/back_to_sequences",
+	"url": " https://rseng.github.io/software/repository/github/pierrepeterlongo/back_to_sequences",
+	"content": "None"
 	},
-	"github/Nicholaswogan/PhotochemPy": {
-	"id": "github/Nicholaswogan/PhotochemPy",
-	"title": "github/Nicholaswogan/PhotochemPy",
-	"url": " https://rseng.github.io/software/repository/github/Nicholaswogan/PhotochemPy",
-	"content": "Photochemical model of rocky planet&#39;s atmospheres."
+	"github/pinellolab/CRISPRitz": {
+	"id": "github/pinellolab/CRISPRitz",
+	"title": "github/pinellolab/CRISPRitz",
+	"url": " https://rseng.github.io/software/repository/github/pinellolab/CRISPRitz",
+	"content": "a software package containing 5 different tools dedicated to perform predictive analysis and result assessement on CRISPR/Cas experiments."
 	},
-	"github/Nicholaswogan/photochem": {
-	"id": "github/Nicholaswogan/photochem",
-	"title": "github/Nicholaswogan/photochem",
-	"url": " https://rseng.github.io/software/repository/github/Nicholaswogan/photochem",
-	"content": "A chemical model of planetary atmospheres"
+	"github/pinellolab/CRISPResso2": {
+	"id": "github/pinellolab/CRISPResso2",
+	"title": "github/pinellolab/CRISPResso2",
+	"url": " https://rseng.github.io/software/repository/github/pinellolab/CRISPResso2",
+	"content": "Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments"
 	},
-	"github/milkschen/leviosam2": {
-	"id": "github/milkschen/leviosam2",
-	"title": "github/milkschen/leviosam2",
-	"url": " https://rseng.github.io/software/repository/github/milkschen/leviosam2",
-	"content": "Fast and accurate coordinate conversion between assemblies"
+	"github/pinellolab/STREAM": {
+	"id": "github/pinellolab/STREAM",
+	"title": "github/pinellolab/STREAM",
+	"url": " https://rseng.github.io/software/repository/github/pinellolab/STREAM",
+	"content": "STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data"
 	},
-	"github/rhdtownsend/gyre": {
-	"id": "github/rhdtownsend/gyre",
-	"title": "github/rhdtownsend/gyre",
-	"url": " https://rseng.github.io/software/repository/github/rhdtownsend/gyre",
-	"content": "The GYRE Stellar Oscillation Code"
+	"github/ChenfuShi/HiChIP_peaks": {
+	"id": "github/ChenfuShi/HiChIP_peaks",
+	"title": "github/ChenfuShi/HiChIP_peaks",
+	"url": " https://rseng.github.io/software/repository/github/ChenfuShi/HiChIP_peaks",
+	"content": "A tool to analyse HiChIP data"
 	},
-	"github/JD2112/methylr": {
-	"id": "github/JD2112/methylr",
-	"title": "github/JD2112/methylr",
-	"url": " https://rseng.github.io/software/repository/github/JD2112/methylr",
-	"content": "methylR: a single shiny solution from sequencer data to pathway analysis"
+	"github/ejhigson/dyPolyChord": {
+	"id": "github/ejhigson/dyPolyChord",
+	"title": "github/ejhigson/dyPolyChord",
+	"url": " https://rseng.github.io/software/repository/github/ejhigson/dyPolyChord",
+	"content": "Super fast dynamic nested sampling with PolyChord (Python, C++ and Fortran likelihoods)."
 	},
-	"github/ExeClim/Isca": {
-	"id": "github/ExeClim/Isca",
-	"title": "github/ExeClim/Isca",
-	"url": " https://rseng.github.io/software/repository/github/ExeClim/Isca",
-	"content": "Idealized GCM from the University of Exeter"
+	"github/ejhigson/perfectns": {
+	"id": "github/ejhigson/perfectns",
+	"title": "github/ejhigson/perfectns",
+	"url": " https://rseng.github.io/software/repository/github/ejhigson/perfectns",
+	"content": "&#34;Perfect&#34; dynamic and standard nested sampling for spherically symmetric likelihoods and priors."
 	},
-	"github/python-streamz/streamz": {
-	"id": "github/python-streamz/streamz",
-	"title": "github/python-streamz/streamz",
-	"url": " https://rseng.github.io/software/repository/github/python-streamz/streamz",
-	"content": "Real-time stream processing for python"
+	"github/ejhigson/nestcheck": {
+	"id": "github/ejhigson/nestcheck",
+	"title": "github/ejhigson/nestcheck",
+	"url": " https://rseng.github.io/software/repository/github/ejhigson/nestcheck",
+	"content": "Error analysis, diagnostic tests and plots for nested sampling calculations."
 	},
-	"github/lorenzo-rovigatti/oxDNA": {
-	"id": "github/lorenzo-rovigatti/oxDNA",
-	"title": "github/lorenzo-rovigatti/oxDNA",
-	"url": " https://rseng.github.io/software/repository/github/lorenzo-rovigatti/oxDNA",
-	"content": "A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings"
+	"github/tum-pbs/PhiML": {
+	"id": "github/tum-pbs/PhiML",
+	"title": "github/tum-pbs/PhiML",
+	"url": " https://rseng.github.io/software/repository/github/tum-pbs/PhiML",
+	"content": "Intuitive scientific computing with dimension types for Jax, PyTorch, TensorFlow &amp; NumPy"
 	},
-	"github/asgr/Rwcs": {
-	"id": "github/asgr/Rwcs",
-	"title": "github/asgr/Rwcs",
-	"url": " https://rseng.github.io/software/repository/github/asgr/Rwcs",
-	"content": "Interface to C wcslib"
+	"github/WaterFutures/EPyT-Flow": {
+	"id": "github/WaterFutures/EPyT-Flow",
+	"title": "github/WaterFutures/EPyT-Flow",
+	"url": " https://rseng.github.io/software/repository/github/WaterFutures/EPyT-Flow",
+	"content": "A high-level interface designed for the easy generation of hydraulic and water quality scenario data."
 	},
-	"github/asgr/NFWdist": {
-	"id": "github/asgr/NFWdist",
-	"title": "github/asgr/NFWdist",
-	"url": " https://rseng.github.io/software/repository/github/asgr/NFWdist",
-	"content": "Density, distribution function, quantile function and random generation for the 3D NFW profile"
+	"github/lasseignelab/CINmetrics": {
+	"id": "github/lasseignelab/CINmetrics",
+	"title": "github/lasseignelab/CINmetrics",
+	"url": " https://rseng.github.io/software/repository/github/lasseignelab/CINmetrics",
+	"content": "CINmetrics R package"
 	},
-	"github/asgr/hyper.fit": {
-	"id": "github/asgr/hyper.fit",
-	"title": "github/asgr/hyper.fit",
-	"url": " https://rseng.github.io/software/repository/github/asgr/hyper.fit",
-	"content": "The hyper.fit hyperplane fitting package."
+	"github/Huang-CL/Magrathea": {
+	"id": "github/Huang-CL/Magrathea",
+	"title": "github/Huang-CL/Magrathea",
+	"url": " https://rseng.github.io/software/repository/github/Huang-CL/Magrathea",
+	"content": "None"
 	},
-	"github/asgr/ProPane": {
-	"id": "github/asgr/ProPane",
-	"title": "github/asgr/ProPane",
-	"url": " https://rseng.github.io/software/repository/github/asgr/ProPane",
-	"content": "Package of stacking related functions, replacing older Rwcs and ProFound related functions."
+	"github/caselawanalytics/CaseLawAnalytics": {
+	"id": "github/caselawanalytics/CaseLawAnalytics",
+	"title": "github/caselawanalytics/CaseLawAnalytics",
+	"url": " https://rseng.github.io/software/repository/github/caselawanalytics/CaseLawAnalytics",
+	"content": "None"
 	},
-	"github/asgr/ProSpect": {
-	"id": "github/asgr/ProSpect",
-	"title": "github/asgr/ProSpect",
-	"url": " https://rseng.github.io/software/repository/github/asgr/ProSpect",
-	"content": "Spectral Generation Package"
+	"github/mr-superonion/FPFS": {
+	"id": "github/mr-superonion/FPFS",
+	"title": "github/mr-superonion/FPFS",
+	"url": " https://rseng.github.io/software/repository/github/mr-superonion/FPFS",
+	"content": "A fast, accurate estimator for small shear distortion."
 	},
-	"github/asgr/ProFound": {
-	"id": "github/asgr/ProFound",
-	"title": "github/asgr/ProFound",
-	"url": " https://rseng.github.io/software/repository/github/asgr/ProFound",
-	"content": "ProFound source finding and extraction"
+	"github/adcameron/ffancy": {
+	"id": "github/adcameron/ffancy",
+	"title": "github/adcameron/ffancy",
+	"url": " https://rseng.github.io/software/repository/github/adcameron/ffancy",
+	"content": "Software package for testing of the Fast Folding Algorithm (FFA)"
 	},
-	"github/asgr/Rfits": {
-	"id": "github/asgr/Rfits",
-	"title": "github/asgr/Rfits",
-	"url": " https://rseng.github.io/software/repository/github/asgr/Rfits",
-	"content": "Rfits stuff"
+	"github/yukiteruono/pbsim2": {
+	"id": "github/yukiteruono/pbsim2",
+	"title": "github/yukiteruono/pbsim2",
+	"url": " https://rseng.github.io/software/repository/github/yukiteruono/pbsim2",
+	"content": "PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores"
 	},
-	"github/asgr/celestial": {
-	"id": "github/asgr/celestial",
-	"title": "github/asgr/celestial",
-	"url": " https://rseng.github.io/software/repository/github/asgr/celestial",
-	"content": "celestial R package"
+	"github/mjacob1002/Eir": {
+	"id": "github/mjacob1002/Eir",
+	"title": "github/mjacob1002/Eir",
+	"url": " https://rseng.github.io/software/repository/github/mjacob1002/Eir",
+	"content": "Eir is a package that helps researchers simulate the spread of epidemics, mainly focusing on discrete-time Markovian spatial models. "
 	},
-	"github/asgr/ProFuse": {
-	"id": "github/asgr/ProFuse",
-	"title": "github/asgr/ProFuse",
-	"url": " https://rseng.github.io/software/repository/github/asgr/ProFuse",
-	"content": "ProFound + ProFit + ProSpect = ProFuse"
+	"github/firedrakeproject/checkpoint_schedules": {
+	"id": "github/firedrakeproject/checkpoint_schedules",
+	"title": "github/firedrakeproject/checkpoint_schedules",
+	"url": " https://rseng.github.io/software/repository/github/firedrakeproject/checkpoint_schedules",
+	"content": "Schedules for incremental checkpointing of adjoint simulations."
+	},
+	"github/firedrakeproject/firedrake": {
+	"id": "github/firedrakeproject/firedrake",
+	"title": "github/firedrakeproject/firedrake",
+	"url": " https://rseng.github.io/software/repository/github/firedrakeproject/firedrake",
+	"content": "Firedrake is an automated system for the portable solution of partial differential equations using the finite element method (FEM)"
 	},
-	"github/snakemake/snakemake": {
-	"id": "github/snakemake/snakemake",
-	"title": "github/snakemake/snakemake",
-	"url": " https://rseng.github.io/software/repository/github/snakemake/snakemake",
-	"content": "This is the development home of the workflow management system Snakemake. For general information, see"
+	"github/firedrakeproject/gusto": {
+	"id": "github/firedrakeproject/gusto",
+	"title": "github/firedrakeproject/gusto",
+	"url": " https://rseng.github.io/software/repository/github/firedrakeproject/gusto",
+	"content": "Three dimensional atmospheric dynamical core using the Gung Ho numerics."
 	},
-	"github/pmaxted/pycheops": {
-	"id": "github/pmaxted/pycheops",
-	"title": "github/pmaxted/pycheops",
-	"url": " https://rseng.github.io/software/repository/github/pmaxted/pycheops",
-	"content": "Python module for the analysis of light curves from the ESA Cheops mission"
+	"github/R-Vessel-X/SlicerRVXLiverSegmentation": {
+	"id": "github/R-Vessel-X/SlicerRVXLiverSegmentation",
+	"title": "github/R-Vessel-X/SlicerRVXLiverSegmentation",
+	"url": " https://rseng.github.io/software/repository/github/R-Vessel-X/SlicerRVXLiverSegmentation",
+	"content": "3D Slicer plugin for Liver Anatomy Annotation by R-Vessel-X"
 	},
-	"github/WatsonGroupTCD/J2suscep": {
-	"id": "github/WatsonGroupTCD/J2suscep",
-	"title": "github/WatsonGroupTCD/J2suscep",
-	"url": " https://rseng.github.io/software/repository/github/WatsonGroupTCD/J2suscep",
-	"content": "See https://github.com/WatsonGroupTCD/J2suscep/wiki"
+	"github/rochoa85/NTDHealth_Forms": {
+	"id": "github/rochoa85/NTDHealth_Forms",
+	"title": "github/rochoa85/NTDHealth_Forms",
+	"url": " https://rseng.github.io/software/repository/github/rochoa85/NTDHealth_Forms",
+	"content": "Based on the OpenMRS HTML Form Entry module, you can find in this github repository a set of forms personalized for neglected tropical virus, including clinical assesment, personal history and epidemiological data. "
 	},
-	"github/exafmm/exafmm-t": {
-	"id": "github/exafmm/exafmm-t",
-	"title": "github/exafmm/exafmm-t",
-	"url": " https://rseng.github.io/software/repository/github/exafmm/exafmm-t",
-	"content": "A kernel-independent fast multipole method library with Python interface."
+	"github/Qiskit-Extensions/qiskit-dynamics": {
+	"id": "github/Qiskit-Extensions/qiskit-dynamics",
+	"title": "github/Qiskit-Extensions/qiskit-dynamics",
+	"url": " https://rseng.github.io/software/repository/github/Qiskit-Extensions/qiskit-dynamics",
+	"content": "Tools for building and solving models of quantum systems in Qiskit"
 	},
-	"github/HadrienG/InSilicoSeq": {
-	"id": "github/HadrienG/InSilicoSeq",
-	"title": "github/HadrienG/InSilicoSeq",
-	"url": " https://rseng.github.io/software/repository/github/HadrienG/InSilicoSeq",
-	"content": ":rocket: A sequencing simulator"
+	"github/ekg/smithwaterman": {
+	"id": "github/ekg/smithwaterman",
+	"title": "github/ekg/smithwaterman",
+	"url": " https://rseng.github.io/software/repository/github/ekg/smithwaterman",
+	"content": "smith-waterman-gotoh alignment algorithm"
 	},
-	"github/fatmasevinck/enetLTS": {
-	"id": "github/fatmasevinck/enetLTS",
-	"title": "github/fatmasevinck/enetLTS",
-	"url": " https://rseng.github.io/software/repository/github/fatmasevinck/enetLTS",
-	"content": "Robust and sparse methods for high diemnsional data including gaussian, binomial and multinomial families"
+	"github/ekg/freebayes": {
+	"id": "github/ekg/freebayes",
+	"title": "github/ekg/freebayes",
+	"url": " https://rseng.github.io/software/repository/github/ekg/freebayes",
+	"content": "Bayesian haplotype-based genetic polymorphism discovery and genotyping."
 	},
-	"github/pengweixing/FACT": {
-	"id": "github/pengweixing/FACT",
-	"title": "github/pengweixing/FACT",
-	"url": " https://rseng.github.io/software/repository/github/pengweixing/FACT",
-	"content": "None"
+	"github/ekg/seqwish": {
+	"id": "github/ekg/seqwish",
+	"title": "github/ekg/seqwish",
+	"url": " https://rseng.github.io/software/repository/github/ekg/seqwish",
+	"content": "alignment to variation graph inducer"
 	},
-	"github/3D-e-Chem/knime-pharmacophore": {
-	"id": "github/3D-e-Chem/knime-pharmacophore",
-	"title": "github/3D-e-Chem/knime-pharmacophore",
-	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-pharmacophore",
-	"content": "KNIME nodes to read/write pharmacophore files"
+	"github/ekg/fastahack": {
+	"id": "github/ekg/fastahack",
+	"title": "github/ekg/fastahack",
+	"url": " https://rseng.github.io/software/repository/github/ekg/fastahack",
+	"content": "utilities for indexing and sequence extraction from FASTA files"
 	},
-	"github/3D-e-Chem/sygma": {
-	"id": "github/3D-e-Chem/sygma",
-	"title": "github/3D-e-Chem/sygma",
-	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/sygma",
-	"content": "A python library for prediction of drug metabolites"
+	"github/ekg/tabixpp": {
+	"id": "github/ekg/tabixpp",
+	"title": "github/ekg/tabixpp",
+	"url": " https://rseng.github.io/software/repository/github/ekg/tabixpp",
+	"content": "C++ wrapper to tabix indexer"
 	},
-	"github/3D-e-Chem/knime-molviewer": {
-	"id": "github/3D-e-Chem/knime-molviewer",
-	"title": "github/3D-e-Chem/knime-molviewer",
-	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-molviewer",
-	"content": "KNIME node which launches a web browser with moleculer viewer powered by webgl"
+	"github/ntveem/sterile-dm": {
+	"id": "github/ntveem/sterile-dm",
+	"title": "github/ntveem/sterile-dm",
+	"url": " https://rseng.github.io/software/repository/github/ntveem/sterile-dm",
+	"content": "A program to follow the production of sterile neutrino dark matter"
 	},
-	"github/3D-e-Chem/knime-sstea": {
-	"id": "github/3D-e-Chem/knime-sstea",
-	"title": "github/3D-e-Chem/knime-sstea",
-	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-sstea",
-	"content": "Knime node to calculate ss-TEA score of sequence alignment and subfamily members."
+	"github/jan-orkisz/colume": {
+	"id": "github/jan-orkisz/colume",
+	"title": "github/jan-orkisz/colume",
+	"url": " https://rseng.github.io/software/repository/github/jan-orkisz/colume",
+	"content": "Estimating volume density of dense insterstellar clouds based on column density maps."
 	},
-	"github/3D-e-Chem/knime-sygma": {
-	"id": "github/3D-e-Chem/knime-sygma",
-	"title": "github/3D-e-Chem/knime-sygma",
-	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-sygma",
-	"content": "KNIME nodes for Sygma"
+	"github/duffell/Disco": {
+	"id": "github/duffell/Disco",
+	"title": "github/duffell/Disco",
+	"url": " https://rseng.github.io/software/repository/github/duffell/Disco",
+	"content": "A moving-mesh magnetohydrodynamics code designed for the study of astrophysical disks."
 	},
-	"github/3D-e-Chem/knime-python-node-archetype": {
-	"id": "github/3D-e-Chem/knime-python-node-archetype",
-	"title": "github/3D-e-Chem/knime-python-node-archetype",
-	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-python-node-archetype",
-	"content": "Knime Python node archetype"
+	"github/duffell/RT1D": {
+	"id": "github/duffell/RT1D",
+	"title": "github/duffell/RT1D",
+	"url": " https://rseng.github.io/software/repository/github/duffell/RT1D",
+	"content": "A 1D Model for Rayleigh-Taylor Instability"
 	},
-	"github/3D-e-Chem/tycho-knime-node-archetype": {
-	"id": "github/3D-e-Chem/tycho-knime-node-archetype",
-	"title": "github/3D-e-Chem/tycho-knime-node-archetype",
-	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/tycho-knime-node-archetype",
-	"content": "Maven archetype for Knime node extension"
+	"github/wangjun1996/VisFeature": {
+	"id": "github/wangjun1996/VisFeature",
+	"title": "github/wangjun1996/VisFeature",
+	"url": " https://rseng.github.io/software/repository/github/wangjun1996/VisFeature",
+	"content": "A stand-alone program for visualizing and analyzing statistical features of biological sequences"
 	},
-	"github/3D-e-Chem/knime-gpcrdb": {
-	"id": "github/3D-e-Chem/knime-gpcrdb",
-	"title": "github/3D-e-Chem/knime-gpcrdb",
-	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-gpcrdb",
-	"content": "GPCRDB nodes for Knime"
+	"github/chhylp123/hifiasm": {
+	"id": "github/chhylp123/hifiasm",
+	"title": "github/chhylp123/hifiasm",
+	"url": " https://rseng.github.io/software/repository/github/chhylp123/hifiasm",
+	"content": "Hifiasm: a haplotype-resolved assembler for accurate Hifi reads "
 	},
-	"github/3D-e-Chem/knime-plants": {
-	"id": "github/3D-e-Chem/knime-plants",
-	"title": "github/3D-e-Chem/knime-plants",
-	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-plants",
-	"content": "KNIME nodes to configure, run and analyze PLANTS protein-ligand docking"
+	"github/vinisalazar/metaphor": {
+	"id": "github/vinisalazar/metaphor",
+	"title": "github/vinisalazar/metaphor",
+	"url": " https://rseng.github.io/software/repository/github/vinisalazar/metaphor",
+	"content": "Metaphor: a general-purpose workflow for assembly and binning of metagenomes"
 	},
-	"github/3D-e-Chem/knime-python-wrapper": {
-	"id": "github/3D-e-Chem/knime-python-wrapper",
-	"title": "github/3D-e-Chem/knime-python-wrapper",
-	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-python-wrapper",
-	"content": "Utilities for development of KNIME nodes calling Python scripts."
+	"github/yi-jia-li/cue": {
+	"id": "github/yi-jia-li/cue",
+	"title": "github/yi-jia-li/cue",
+	"url": " https://rseng.github.io/software/repository/github/yi-jia-li/cue",
+	"content": "nebular emission modeling"
 	},
-	"github/3D-e-Chem/knime-testflow": {
-	"id": "github/3D-e-Chem/knime-testflow",
-	"title": "github/3D-e-Chem/knime-testflow",
-	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-testflow",
-	"content": "Test Knime workflows from a Junit test."
+	"github/Dfupa/meTAline": {
+	"id": "github/Dfupa/meTAline",
+	"title": "github/Dfupa/meTAline",
+	"url": " https://rseng.github.io/software/repository/github/Dfupa/meTAline",
+	"content": "WGS pipeline implementation in Snakemake"
 	},
-	"github/3D-e-Chem/knime-klifs": {
-	"id": "github/3D-e-Chem/knime-klifs",
-	"title": "github/3D-e-Chem/knime-klifs",
-	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-klifs",
-	"content": "Knime nodes to interact with KLIFS"
+	"github/bolverk/huji-rich": {
+	"id": "github/bolverk/huji-rich",
+	"title": "github/bolverk/huji-rich",
+	"url": " https://rseng.github.io/software/repository/github/bolverk/huji-rich",
+	"content": "A hydrodynamic simulation on a moving mesh"
 	},
-	"github/3D-e-Chem/knime-kripodb": {
-	"id": "github/3D-e-Chem/knime-kripodb",
-	"title": "github/3D-e-Chem/knime-kripodb",
-	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-kripodb",
-	"content": "Knime node for KripoDB package"
+	"github/EbmeyerSt/GEnView": {
+	"id": "github/EbmeyerSt/GEnView",
+	"title": "github/EbmeyerSt/GEnView",
+	"url": " https://rseng.github.io/software/repository/github/EbmeyerSt/GEnView",
+	"content": "GEnView - A phylogeny based comparative genomics software to analyze the genetic environment of genes"
 	},
-	"github/3D-e-Chem/kripodb": {
-	"id": "github/3D-e-Chem/kripodb",
-	"title": "github/3D-e-Chem/kripodb",
-	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/kripodb",
-	"content": "Library to interact with Kripo fragment, fingerprint and similarity data files."
+	"github/jcorbino/mole": {
+	"id": "github/jcorbino/mole",
+	"title": "github/jcorbino/mole",
+	"url": " https://rseng.github.io/software/repository/github/jcorbino/mole",
+	"content": "Mimetic Operators Library Enhanced"
 	},
-	"github/3D-e-Chem/3D-e-Chem-VM": {
-	"id": "github/3D-e-Chem/3D-e-Chem-VM",
-	"title": "github/3D-e-Chem/3D-e-Chem-VM",
-	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/3D-e-Chem-VM",
-	"content": "Virtual machine with all software and sample data to run 3D-e-Chem Knime workflows"
+	"github/dask/dask": {
+	"id": "github/dask/dask",
+	"title": "github/dask/dask",
+	"url": " https://rseng.github.io/software/repository/github/dask/dask",
+	"content": "Parallel computing with task scheduling"
 	},
-	"github/3D-e-Chem/knime-silicos-it": {
-	"id": "github/3D-e-Chem/knime-silicos-it",
-	"title": "github/3D-e-Chem/knime-silicos-it",
-	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-silicos-it",
-	"content": "KNIME nodes and example workflows for software made by Silicos-it, ie. align-it, shape-it"
+	"github/hanyue36/nanoplexer": {
+	"id": "github/hanyue36/nanoplexer",
+	"title": "github/hanyue36/nanoplexer",
+	"url": " https://rseng.github.io/software/repository/github/hanyue36/nanoplexer",
+	"content": "Tool for demultiplexing Nanopore barcode sequence data"
 	},
-	"github/pixixiaonaogou/MLSDR": {
-	"id": "github/pixixiaonaogou/MLSDR",
-	"title": "github/pixixiaonaogou/MLSDR",
-	"url": " https://rseng.github.io/software/repository/github/pixixiaonaogou/MLSDR",
+	"github/bharathramh/STRIDE-DB_Codes": {
+	"id": "github/bharathramh/STRIDE-DB_Codes",
+	"title": "github/bharathramh/STRIDE-DB_Codes",
+	"url": " https://rseng.github.io/software/repository/github/bharathramh/STRIDE-DB_Codes",
 	"content": "None"
 	},
-	"github/kavir1698/EvoDynamics.jl": {
-	"id": "github/kavir1698/EvoDynamics.jl",
-	"title": "github/kavir1698/EvoDynamics.jl",
-	"url": " https://rseng.github.io/software/repository/github/kavir1698/EvoDynamics.jl",
-	"content": "Simulation of eco-evolutionary dynamics on multi-trait networks"
+	"github/barbagroup/geoclaw-landspill": {
+	"id": "github/barbagroup/geoclaw-landspill",
+	"title": "github/barbagroup/geoclaw-landspill",
+	"url": " https://rseng.github.io/software/repository/github/barbagroup/geoclaw-landspill",
+	"content": "An oil land-spill and overland flow simulator for pipeline rupture events"
 	},
-	"github/pelican/pelican": {
-	"id": "github/pelican/pelican",
-	"title": "github/pelican/pelican",
-	"url": " https://rseng.github.io/software/repository/github/pelican/pelican",
-	"content": "Pipeline for Extensible Lightweight Imaging and CAlibratioN"
+	"github/mbillingr/libgdf": {
+	"id": "github/mbillingr/libgdf",
+	"title": "github/mbillingr/libgdf",
+	"url": " https://rseng.github.io/software/repository/github/mbillingr/libgdf",
+	"content": "C++ implementation of GDF - &#34;a general dataformat for biosignals&#34; version V2.20."
 	},
-	"github/OSSOS/SurveySimulator": {
-	"id": "github/OSSOS/SurveySimulator",
-	"title": "github/OSSOS/SurveySimulator",
-	"url": " https://rseng.github.io/software/repository/github/OSSOS/SurveySimulator",
-	"content": "Simulate detecting TNOs, nearly as fun as really detecting TNOs."
+	"github/brandonckelly/carma_pack": {
+	"id": "github/brandonckelly/carma_pack",
+	"title": "github/brandonckelly/carma_pack",
+	"url": " https://rseng.github.io/software/repository/github/brandonckelly/carma_pack",
+	"content": "MCMC Sampler for Performing Bayesian Inference on Continuous Time Autoregressive Models."
 	},
-	"github/nivha/three_body_integration": {
-	"id": "github/nivha/three_body_integration",
-	"title": "github/nivha/three_body_integration",
-	"url": " https://rseng.github.io/software/repository/github/nivha/three_body_integration",
+	"github/paucablop/chemotools": {
+	"id": "github/paucablop/chemotools",
+	"title": "github/paucablop/chemotools",
+	"url": " https://rseng.github.io/software/repository/github/paucablop/chemotools",
+	"content": "Integrate your chemometric tools with the scikit-learn API 🧪 🤖 "
+	},
+	"github/parkus/fiducial_flare": {
+	"id": "github/parkus/fiducial_flare",
+	"title": "github/parkus/fiducial_flare",
+	"url": " https://rseng.github.io/software/repository/github/parkus/fiducial_flare",
+	"content": "Generate spectra and lightcurves of a standardized far ultraviolet flare."
+	},
+	"github/parkus/scicatalog": {
+	"id": "github/parkus/scicatalog",
+	"title": "github/parkus/scicatalog",
+	"url": " https://rseng.github.io/software/repository/github/parkus/scicatalog",
 	"content": "None"
 	},
-	"github/wtsi-hpag/HiLine": {
-	"id": "github/wtsi-hpag/HiLine",
-	"title": "github/wtsi-hpag/HiLine",
-	"url": " https://rseng.github.io/software/repository/github/wtsi-hpag/HiLine",
-	"content": "HiC alignment and classification pipeline"
+	"github/parkus/ffd": {
+	"id": "github/parkus/ffd",
+	"title": "github/parkus/ffd",
+	"url": " https://rseng.github.io/software/repository/github/parkus/ffd",
+	"content": "Tools for the analysis of flare frequency distributions for flares detected in heterogenous datasets."
 	},
-	"github/SofieVG/FlowSOM": {
-	"id": "github/SofieVG/FlowSOM",
-	"title": "github/SofieVG/FlowSOM",
-	"url": " https://rseng.github.io/software/repository/github/SofieVG/FlowSOM",
-	"content": "Using self-organizing maps for visualization and interpretation of cytometry data"
+	"github/richford/groupyr": {
+	"id": "github/richford/groupyr",
+	"title": "github/richford/groupyr",
+	"url": " https://rseng.github.io/software/repository/github/richford/groupyr",
+	"content": "groupyr: Sparse Group Lasso in Python"
 	},
-	"github/Romea/hunter": {
-	"id": "github/Romea/hunter",
-	"title": "github/Romea/hunter",
-	"url": " https://rseng.github.io/software/repository/github/Romea/hunter",
-	"content": "None"
+	"github/ProfessorBrunner/rc3-pipeline": {
+	"id": "github/ProfessorBrunner/rc3-pipeline",
+	"title": "github/ProfessorBrunner/rc3-pipeline",
+	"url": " https://rseng.github.io/software/repository/github/ProfessorBrunner/rc3-pipeline",
+	"content": "Make digital images of RC3 galaxies by using final, calibrated SDSS images"
 	},
-	"github/Romea/alpo": {
-	"id": "github/Romea/alpo",
-	"title": "github/Romea/alpo",
-	"url": " https://rseng.github.io/software/repository/github/Romea/alpo",
-	"content": "None"
+	"github/adamantine-sim/adamantine": {
+	"id": "github/adamantine-sim/adamantine",
+	"title": "github/adamantine-sim/adamantine",
+	"url": " https://rseng.github.io/software/repository/github/adamantine-sim/adamantine",
+	"content": "Software to simulate heat transfer for additive manufacturing"
 	},
-	"github/Romea/romea-ros2-cmd-mux": {
-	"id": "github/Romea/romea-ros2-cmd-mux",
-	"title": "github/Romea/romea-ros2-cmd-mux",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-cmd-mux",
-	"content": "None"
+	"github/NicOudart/PyBWE": {
+	"id": "github/NicOudart/PyBWE",
+	"title": "github/NicOudart/PyBWE",
+	"url": " https://rseng.github.io/software/repository/github/NicOudart/PyBWE",
+	"content": "Python library for radar Bandwidth Extrapolation (BWE)"
 	},
-	"github/Romea/romea-ros2-rgbd-camera": {
-	"id": "github/Romea/romea-ros2-rgbd-camera",
-	"title": "github/Romea/romea-ros2-rgbd-camera",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-rgbd-camera",
-	"content": "None"
+	"github/ArtificialStellarPopulations/ArtPop": {
+	"id": "github/ArtificialStellarPopulations/ArtPop",
+	"title": "github/ArtificialStellarPopulations/ArtPop",
+	"url": " https://rseng.github.io/software/repository/github/ArtificialStellarPopulations/ArtPop",
+	"content": "Building artificial galaxies one star at a time. "
 	},
-	"github/Romea/romea-ros2-localisation-utils": {
-	"id": "github/Romea/romea-ros2-localisation-utils",
-	"title": "github/Romea/romea-ros2-localisation-utils",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-localisation-utils",
-	"content": "None"
+	"github/flyaflya/causact": {
+	"id": "github/flyaflya/causact",
+	"title": "github/flyaflya/causact",
+	"url": " https://rseng.github.io/software/repository/github/flyaflya/causact",
+	"content": "causact:  R package to accelerate Bayesian analytics workflows."
 	},
-	"github/Romea/romea-core-path": {
-	"id": "github/Romea/romea-core-path",
-	"title": "github/Romea/romea-core-path",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-core-path",
-	"content": "None"
+	"github/reneheller/pile-up": {
+	"id": "github/reneheller/pile-up",
+	"title": "github/reneheller/pile-up",
+	"url": " https://rseng.github.io/software/repository/github/reneheller/pile-up",
+	"content": "A gnuplot script for Monte Carlo simulations of disk and stellar tidal torques acting on hot Jupiters"
 	},
-	"github/Romea/romea-core-gps": {
-	"id": "github/Romea/romea-core-gps",
-	"title": "github/Romea/romea-core-gps",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-core-gps",
-	"content": "None"
+	"github/torluca/morphofit": {
+	"id": "github/torluca/morphofit",
+	"title": "github/torluca/morphofit",
+	"url": " https://rseng.github.io/software/repository/github/torluca/morphofit",
+	"content": "A Python package for the morphological analysis of galaxies (Tortorelli &amp; Mercurio 2023)."
 	},
-	"github/Romea/romea-ros2-camera": {
-	"id": "github/Romea/romea-ros2-camera",
-	"title": "github/Romea/romea-ros2-camera",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-camera",
-	"content": "None"
+	"github/SJaffa/Jplots": {
+	"id": "github/SJaffa/Jplots",
+	"title": "github/SJaffa/Jplots",
+	"url": " https://rseng.github.io/software/repository/github/SJaffa/Jplots",
+	"content": "Astrophysical data analysis tool: quantifying the shape of pixelated structures using moments"
 	},
-	"github/Romea/romea-ros2-robot-to-human-localisation-core": {
-	"id": "github/Romea/romea-ros2-robot-to-human-localisation-core",
-	"title": "github/Romea/romea-ros2-robot-to-human-localisation-core",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-robot-to-human-localisation-core",
-	"content": "None"
+	"github/AemulusProject/bias_emulator": {
+	"id": "github/AemulusProject/bias_emulator",
+	"title": "github/AemulusProject/bias_emulator",
+	"url": " https://rseng.github.io/software/repository/github/AemulusProject/bias_emulator",
+	"content": "Emulator for the halo bias from The Aemulus Project."
 	},
-	"github/Romea/romea-ros2-stereo-camera": {
-	"id": "github/Romea/romea-ros2-stereo-camera",
-	"title": "github/Romea/romea-ros2-stereo-camera",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-stereo-camera",
-	"content": "None"
+	"github/sylvainprigent/napari-tracks-reader": {
+	"id": "github/sylvainprigent/napari-tracks-reader",
+	"title": "github/sylvainprigent/napari-tracks-reader",
+	"url": " https://rseng.github.io/software/repository/github/sylvainprigent/napari-tracks-reader",
+	"content": "napari reader plugin for tracking"
 	},
-	"github/Romea/adap2e": {
-	"id": "github/Romea/adap2e",
-	"title": "github/Romea/adap2e",
-	"url": " https://rseng.github.io/software/repository/github/Romea/adap2e",
-	"content": "None"
+	"github/pyvisa/pyvisa": {
+	"id": "github/pyvisa/pyvisa",
+	"title": "github/pyvisa/pyvisa",
+	"url": " https://rseng.github.io/software/repository/github/pyvisa/pyvisa",
+	"content": "A Python package with bindings to the &#34;Virtual Instrument Software Architecture&#34; VISA library, in order to control measurement devices and test equipment via GPIB, RS232, or USB."
 	},
-	"github/Romea/romea-ros2-mobile-base": {
-	"id": "github/Romea/romea-ros2-mobile-base",
-	"title": "github/Romea/romea-ros2-mobile-base",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-mobile-base",
-	"content": "None"
+	"github/CHRF-Genomics/Paratype": {
+	"id": "github/CHRF-Genomics/Paratype",
+	"title": "github/CHRF-Genomics/Paratype",
+	"url": " https://rseng.github.io/software/repository/github/CHRF-Genomics/Paratype",
+	"content": "Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data."
 	},
-	"github/Romea/romea-core-common": {
-	"id": "github/Romea/romea-core-common",
-	"title": "github/Romea/romea-core-common",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-core-common",
-	"content": "None"
+	"github/MatthijsHak/MetalDock": {
+	"id": "github/MatthijsHak/MetalDock",
+	"title": "github/MatthijsHak/MetalDock",
+	"url": " https://rseng.github.io/software/repository/github/MatthijsHak/MetalDock",
+	"content": "Dock organometallic compounds to proteins/DNA/biomolecules"
 	},
-	"github/Romea/romea-ros2-robot-to-human-localisation-rtls-plugin": {
-	"id": "github/Romea/romea-ros2-robot-to-human-localisation-rtls-plugin",
-	"title": "github/Romea/romea-ros2-robot-to-human-localisation-rtls-plugin",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-robot-to-human-localisation-rtls-plugin",
-	"content": "None"
+	"github/Ayuei/DeBEIR": {
+	"id": "github/Ayuei/DeBEIR",
+	"title": "github/Ayuei/DeBEIR",
+	"url": " https://rseng.github.io/software/repository/github/Ayuei/DeBEIR",
+	"content": "Dense Bi-Encoder Retrieval for Rapid Experimentation"
 	},
-	"github/Romea/romea-ros2-teleop": {
-	"id": "github/Romea/romea-ros2-teleop",
-	"title": "github/Romea/romea-ros2-teleop",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-teleop",
-	"content": "None"
+	"github/fabian-sp/GGLasso": {
+	"id": "github/fabian-sp/GGLasso",
+	"title": "github/fabian-sp/GGLasso",
+	"url": " https://rseng.github.io/software/repository/github/fabian-sp/GGLasso",
+	"content": "Implementations for solving the Group and Fused Graphical Lasso problem"
 	},
-	"github/Romea/romea-core-filtering": {
-	"id": "github/Romea/romea-core-filtering",
-	"title": "github/Romea/romea-core-filtering",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-core-filtering",
-	"content": "None"
+	"github/OxES/k2sc": {
+	"id": "github/OxES/k2sc",
+	"title": "github/OxES/k2sc",
+	"url": " https://rseng.github.io/software/repository/github/OxES/k2sc",
+	"content": "K2 systematics correction using Gaussian processes"
 	},
-	"github/Romea/romea-ros2-robot-to-world-localisation-rtls-plugin": {
-	"id": "github/Romea/romea-ros2-robot-to-world-localisation-rtls-plugin",
-	"title": "github/Romea/romea-ros2-robot-to-world-localisation-rtls-plugin",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-robot-to-world-localisation-rtls-plugin",
-	"content": "None"
+	"github/prdm0/ropenblas": {
+	"id": "github/prdm0/ropenblas",
+	"title": "github/prdm0/ropenblas",
+	"url": " https://rseng.github.io/software/repository/github/prdm0/ropenblas",
+	"content": "Package to link R language to OpenBLAS library"
 	},
-	"github/Romea/husky": {
-	"id": "github/Romea/husky",
-	"title": "github/Romea/husky",
-	"url": " https://rseng.github.io/software/repository/github/Romea/husky",
-	"content": "None"
+	"github/li-yangyang/lotus": {
+	"id": "github/li-yangyang/lotus",
+	"title": "github/li-yangyang/lotus",
+	"url": " https://rseng.github.io/software/repository/github/li-yangyang/lotus",
+	"content": "Fast tool for 1D Non-LTE stellar parameter determination via Equivalent Width method"
 	},
-	"github/Romea/robucar": {
-	"id": "github/Romea/robucar",
-	"title": "github/Romea/robucar",
-	"url": " https://rseng.github.io/software/repository/github/Romea/robucar",
-	"content": "None"
+	"github/dwkim78/pdtrend": {
+	"id": "github/dwkim78/pdtrend",
+	"title": "github/dwkim78/pdtrend",
+	"url": " https://rseng.github.io/software/repository/github/dwkim78/pdtrend",
+	"content": "Photometric Detrending Algorithm"
 	},
-	"github/Romea/aroco": {
-	"id": "github/Romea/aroco",
-	"title": "github/Romea/aroco",
-	"url": " https://rseng.github.io/software/repository/github/Romea/aroco",
-	"content": "None"
+	"github/dwkim78/ASTRiDE": {
+	"id": "github/dwkim78/ASTRiDE",
+	"title": "github/dwkim78/ASTRiDE",
+	"url": " https://rseng.github.io/software/repository/github/dwkim78/ASTRiDE",
+	"content": "AUTOMATED STREAK DETECTION FOR ASTRONOMICAL IMAGES"
 	},
-	"github/Romea/romea-ros2-gps": {
-	"id": "github/Romea/romea-ros2-gps",
-	"title": "github/Romea/romea-ros2-gps",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-gps",
-	"content": "None"
+	"github/dwkim78/upsilon": {
+	"id": "github/dwkim78/upsilon",
+	"title": "github/dwkim78/upsilon",
+	"url": " https://rseng.github.io/software/repository/github/dwkim78/upsilon",
+	"content": "Automated Classification of Periodic Variable Stars Using Machine Learning"
 	},
-	"github/Romea/romea-core-rtls": {
-	"id": "github/Romea/romea-core-rtls",
-	"title": "github/Romea/romea-core-rtls",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-core-rtls",
-	"content": "None"
+	"github/snowformatics/macrobot": {
+	"id": "github/snowformatics/macrobot",
+	"title": "github/snowformatics/macrobot",
+	"url": " https://rseng.github.io/software/repository/github/snowformatics/macrobot",
+	"content": "Macrobot is an open source image analysis software for studying plant-pathogen interactions on macroscopic level."
 	},
-	"github/Romea/romea-core-imu": {
-	"id": "github/Romea/romea-core-imu",
-	"title": "github/Romea/romea-core-imu",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-core-imu",
-	"content": "None"
+	"github/dpseidel/stmove": {
+	"id": "github/dpseidel/stmove",
+	"title": "github/dpseidel/stmove",
+	"url": " https://rseng.github.io/software/repository/github/dpseidel/stmove",
+	"content": "Build reproducible reports for spatial-temporal animal movement analysis"
 	},
-	"github/Romea/romea-ros2-imu": {
-	"id": "github/Romea/romea-ros2-imu",
-	"title": "github/Romea/romea-ros2-imu",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-imu",
-	"content": "None"
+	"github/gpertea/gclib": {
+	"id": "github/gpertea/gclib",
+	"title": "github/gpertea/gclib",
+	"url": " https://rseng.github.io/software/repository/github/gpertea/gclib",
+	"content": "GCLib - Genomic C++ library of reusable code for bioinformatics projects"
 	},
-	"github/Romea/romea-ros2-robot-to-world-localisation-core": {
-	"id": "github/Romea/romea-ros2-robot-to-world-localisation-core",
-	"title": "github/Romea/romea-ros2-robot-to-world-localisation-core",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-robot-to-world-localisation-core",
-	"content": "None"
+	"github/gpertea/cdbfasta": {
+	"id": "github/gpertea/cdbfasta",
+	"title": "github/gpertea/cdbfasta",
+	"url": " https://rseng.github.io/software/repository/github/gpertea/cdbfasta",
+	"content": "Constant DataBase tools for indexing and retrieving records from multi-FASTA or similarly structured files"
 	},
-	"github/Romea/scout": {
-	"id": "github/Romea/scout",
-	"title": "github/Romea/scout",
-	"url": " https://rseng.github.io/software/repository/github/Romea/scout",
-	"content": "None"
+	"github/Nicole-DH/ACP-MLC": {
+	"id": "github/Nicole-DH/ACP-MLC",
+	"title": "github/Nicole-DH/ACP-MLC",
+	"url": " https://rseng.github.io/software/repository/github/Nicole-DH/ACP-MLC",
+	"content": "ACP-MLC: A two-level prediction engine for identification of anticancer peptides and multi-label classification of their functional types"
 	},
-	"github/Romea/cinteo": {
-	"id": "github/Romea/cinteo",
-	"title": "github/Romea/cinteo",
-	"url": " https://rseng.github.io/software/repository/github/Romea/cinteo",
-	"content": "None"
+	"github/GATB/gatb-core": {
+	"id": "github/GATB/gatb-core",
+	"title": "github/GATB/gatb-core",
+	"url": " https://rseng.github.io/software/repository/github/GATB/gatb-core",
+	"content": "Core library of the Genome Analysis Toolbox with de-Bruijn graph"
 	},
-	"github/Romea/romea-ros2-robot-to-robot-localisation-rtls-plugin": {
-	"id": "github/Romea/romea-ros2-robot-to-robot-localisation-rtls-plugin",
-	"title": "github/Romea/romea-ros2-robot-to-robot-localisation-rtls-plugin",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-robot-to-robot-localisation-rtls-plugin",
-	"content": "None"
+	"github/GATB/simka": {
+	"id": "github/GATB/simka",
+	"title": "github/GATB/simka",
+	"url": " https://rseng.github.io/software/repository/github/GATB/simka",
+	"content": "Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets."
 	},
-	"github/Romea/romea-core-localisation-gps": {
-	"id": "github/Romea/romea-core-localisation-gps",
-	"title": "github/Romea/romea-core-localisation-gps",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-core-localisation-gps",
-	"content": "None"
+	"github/GATB/bcalm": {
+	"id": "github/GATB/bcalm",
+	"title": "github/GATB/bcalm",
+	"url": " https://rseng.github.io/software/repository/github/GATB/bcalm",
+	"content": "compacted de Bruijn graph construction in low memory"
 	},
-	"github/Romea/romea-ros2-robot-to-robot-localisation-core": {
-	"id": "github/Romea/romea-ros2-robot-to-robot-localisation-core",
-	"title": "github/Romea/romea-ros2-robot-to-robot-localisation-core",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-robot-to-robot-localisation-core",
-	"content": "None"
+	"github/GATB/MindTheGap": {
+	"id": "github/GATB/MindTheGap",
+	"title": "github/GATB/MindTheGap",
+	"url": " https://rseng.github.io/software/repository/github/GATB/MindTheGap",
+	"content": "MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool."
 	},
-	"github/Romea/romea-ros2-joy": {
-	"id": "github/Romea/romea-ros2-joy",
-	"title": "github/Romea/romea-ros2-joy",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-joy",
+	"github/miche-levi/pncbc-eftofpng": {
+	"id": "github/miche-levi/pncbc-eftofpng",
+	"title": "github/miche-levi/pncbc-eftofpng",
+	"url": " https://rseng.github.io/software/repository/github/miche-levi/pncbc-eftofpng",
 	"content": "None"
 	},
-	"github/Romea/romea-ros2-lidar": {
-	"id": "github/Romea/romea-ros2-lidar",
-	"title": "github/Romea/romea-ros2-lidar",
-	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-lidar",
+	"github/JianjunTan-Beijing/LPI-CSFFR": {
+	"id": "github/JianjunTan-Beijing/LPI-CSFFR",
+	"title": "github/JianjunTan-Beijing/LPI-CSFFR",
+	"url": " https://rseng.github.io/software/repository/github/JianjunTan-Beijing/LPI-CSFFR",
 	"content": "None"
 	},
-	"github/ysekig/GPMsDB-tk": {
-	"id": "github/ysekig/GPMsDB-tk",
-	"title": "github/ysekig/GPMsDB-tk",
-	"url": " https://rseng.github.io/software/repository/github/ysekig/GPMsDB-tk",
-	"content": "Genomically predicted protein mass database (GPMsDB) toolkits for assigning taxonomic identification of bacterial and archaeal cells with user-provided MALDI-TOF mass spectrometry profiles"
-	},
-	"github/ysekig/GPMsDB-dbtk": {
-	"id": "github/ysekig/GPMsDB-dbtk",
-	"title": "github/ysekig/GPMsDB-dbtk",
-	"url": " https://rseng.github.io/software/repository/github/ysekig/GPMsDB-dbtk",
-	"content": "toolkits for GPMsDB-tk to modify its database with user-provided bacterial and archaeal genome/metagenome-assembled genome (MAG) sequences"
-	},
-	"github/introlab/opentera": {
-	"id": "github/introlab/opentera",
-	"title": "github/introlab/opentera",
-	"url": " https://rseng.github.io/software/repository/github/introlab/opentera",
-	"content": "OpenTera - Open TeleRehabilitation Server and Micro-Services"
+	"github/PolyChord/PolyChordLite": {
+	"id": "github/PolyChord/PolyChordLite",
+	"title": "github/PolyChord/PolyChordLite",
+	"url": " https://rseng.github.io/software/repository/github/PolyChord/PolyChordLite",
+	"content": "Public version of PolyChord: See polychord.co.uk for PolyChordPro"
 	},
-	"github/Sulstice/cocktail-shaker": {
-	"id": "github/Sulstice/cocktail-shaker",
-	"title": "github/Sulstice/cocktail-shaker",
-	"url": " https://rseng.github.io/software/repository/github/Sulstice/cocktail-shaker",
-	"content": "None"
+	"github/tjlcbakx/redshift-search-graphs": {
+	"id": "github/tjlcbakx/redshift-search-graphs",
+	"title": "github/tjlcbakx/redshift-search-graphs",
+	"url": " https://rseng.github.io/software/repository/github/tjlcbakx/redshift-search-graphs",
+	"content": "Efficient analysis of bandwidth coverage and spectral lines for finding z-specs"
 	},
-	"github/felixbosco/KeplerFit": {
-	"id": "github/felixbosco/KeplerFit",
-	"title": "github/felixbosco/KeplerFit",
-	"url": " https://rseng.github.io/software/repository/github/felixbosco/KeplerFit",
-	"content": "A small piece of code to fit a Keplerian velocity distribution model to position-velocity data"
+	"github/Blosc/c-blosc": {
+	"id": "github/Blosc/c-blosc",
+	"title": "github/Blosc/c-blosc",
+	"url": " https://rseng.github.io/software/repository/github/Blosc/c-blosc",
+	"content": "A blocking, shuffling and loss-less compression library that can be faster than `memcpy()`."
 	},
-	"github/SietzeN/glottospace": {
-	"id": "github/SietzeN/glottospace",
-	"title": "github/SietzeN/glottospace",
-	"url": " https://rseng.github.io/software/repository/github/SietzeN/glottospace",
-	"content": "Geospatial analysis of linguistic data"
+	"github/NCAS-CMS/cfdm": {
+	"id": "github/NCAS-CMS/cfdm",
+	"title": "github/NCAS-CMS/cfdm",
+	"url": " https://rseng.github.io/software/repository/github/NCAS-CMS/cfdm",
+	"content": "A Python reference implementation of the CF data model"
 	},
-	"github/yongsukyee/uncertain_blackholemass": {
-	"id": "github/yongsukyee/uncertain_blackholemass",
-	"title": "github/yongsukyee/uncertain_blackholemass",
-	"url": " https://rseng.github.io/software/repository/github/yongsukyee/uncertain_blackholemass",
-	"content": "Uncertainty quantification of black hole mass estimation"
+	"github/compomics/DeepLC": {
+	"id": "github/compomics/DeepLC",
+	"title": "github/compomics/DeepLC",
+	"url": " https://rseng.github.io/software/repository/github/compomics/DeepLC",
+	"content": "DeepLC: Retention time prediction for (modified) peptides using Deep Learning."
 	},
-	"github/wpb-astro/MCSED": {
-	"id": "github/wpb-astro/MCSED",
-	"title": "github/wpb-astro/MCSED",
-	"url": " https://rseng.github.io/software/repository/github/wpb-astro/MCSED",
-	"content": "None"
+	"github/compomics/COSS": {
+	"id": "github/compomics/COSS",
+	"title": "github/compomics/COSS",
+	"url": " https://rseng.github.io/software/repository/github/compomics/COSS",
+	"content": "COSS: CompOmics Spectral Searching"
 	},
-	"github/milicolazo/Pyedra": {
-	"id": "github/milicolazo/Pyedra",
-	"title": "github/milicolazo/Pyedra",
-	"url": " https://rseng.github.io/software/repository/github/milicolazo/Pyedra",
-	"content": "None"
+	"github/compomics/xilmass": {
+	"id": "github/compomics/xilmass",
+	"title": "github/compomics/xilmass",
+	"url": " https://rseng.github.io/software/repository/github/compomics/xilmass",
+	"content": "An algorithm to identify cross-linked peptides"
 	},
-	"github/BapMel/mesocalc": {
-	"id": "github/BapMel/mesocalc",
-	"title": "github/BapMel/mesocalc",
-	"url": " https://rseng.github.io/software/repository/github/BapMel/mesocalc",
-	"content": "MesoCalc is a Mesopotamian calculator."
+	"github/sumn2u/annotate-lab": {
+	"id": "github/sumn2u/annotate-lab",
+	"title": "github/sumn2u/annotate-lab",
+	"url": " https://rseng.github.io/software/repository/github/sumn2u/annotate-lab",
+	"content": "Annotate-lab is an open-source image annotation tool for efficient dataset creation. With an intuitive interface and flexible export options, it streamlines your machine learning workflow. 🖼️✏️📑"
 	},
-	"github/zhangzzk/forklens": {
-	"id": "github/zhangzzk/forklens",
-	"title": "github/zhangzzk/forklens",
-	"url": " https://rseng.github.io/software/repository/github/zhangzzk/forklens",
-	"content": "DL weak lensing shear"
+	"github/eScatter/pyelsepa": {
+	"id": "github/eScatter/pyelsepa",
+	"title": "github/eScatter/pyelsepa",
+	"url": " https://rseng.github.io/software/repository/github/eScatter/pyelsepa",
+	"content": "A Python wrapper for ELSEPA"
 	},
-	"github/barnabytprowe/imcom": {
-	"id": "github/barnabytprowe/imcom",
-	"title": "github/barnabytprowe/imcom",
-	"url": " https://rseng.github.io/software/repository/github/barnabytprowe/imcom",
-	"content": "Public repository for the IMCOM (IMage COMbination) software described in Rowe, Hirata &amp; Rhodes (2011)"
+	"github/mtceballos/SIRENAdoc": {
+	"id": "github/mtceballos/SIRENAdoc",
+	"title": "github/mtceballos/SIRENAdoc",
+	"url": " https://rseng.github.io/software/repository/github/mtceballos/SIRENAdoc",
+	"content": "SIRENA documentation"
 	},
-	"github/yqiuu/spectuner": {
-	"id": "github/yqiuu/spectuner",
-	"title": "github/yqiuu/spectuner",
-	"url": " https://rseng.github.io/software/repository/github/yqiuu/spectuner",
-	"content": "A tool for automated line identification of interstellar molecules."
+	"github/HaowenZhang/TRINITY": {
+	"id": "github/HaowenZhang/TRINITY",
+	"title": "github/HaowenZhang/TRINITY",
+	"url": " https://rseng.github.io/software/repository/github/HaowenZhang/TRINITY",
+	"content": "An empirical model that statistically connects dark matter halos, galaxies and supermassive black holes from z=0-10."
 	},
-	"github/yqiuu/starduster": {
-	"id": "github/yqiuu/starduster",
-	"title": "github/yqiuu/starduster",
-	"url": " https://rseng.github.io/software/repository/github/yqiuu/starduster",
-	"content": "A multi-wavelength SED model based on radiative transfer and deep learning."
+	"github/ulelab/ultraplex": {
+	"id": "github/ulelab/ultraplex",
+	"title": "github/ulelab/ultraplex",
+	"url": " https://rseng.github.io/software/repository/github/ulelab/ultraplex",
+	"content": "Ultra-fast 5&#39; and 3&#39; demultiplexer"
 	},
-	"github/ZhaiLab-SUSTech/FLEPSeq": {
-	"id": "github/ZhaiLab-SUSTech/FLEPSeq",
-	"title": "github/ZhaiLab-SUSTech/FLEPSeq",
-	"url": " https://rseng.github.io/software/repository/github/ZhaiLab-SUSTech/FLEPSeq",
-	"content": "The analysis pipeline for FLEP-seq"
+	"github/morispi/LRez": {
+	"id": "github/morispi/LRez",
+	"title": "github/morispi/LRez",
+	"url": " https://rseng.github.io/software/repository/github/morispi/LRez",
+	"content": "Standalone tool and library allowing to work with barcoded linked-reads"
 	},
-	"github/nimble-dev/nimbleHMC": {
-	"id": "github/nimble-dev/nimbleHMC",
-	"title": "github/nimble-dev/nimbleHMC",
-	"url": " https://rseng.github.io/software/repository/github/nimble-dev/nimbleHMC",
-	"content": "HMC and other derivative-based MCMC sampling algorithms for the nimble package"
+	"github/rodluger/planetplanet": {
+	"id": "github/rodluger/planetplanet",
+	"title": "github/rodluger/planetplanet",
+	"url": " https://rseng.github.io/software/repository/github/rodluger/planetplanet",
+	"content": "A general photodynamical code for exoplanet light curves"
 	},
-	"github/OpenGene/fastp": {
-	"id": "github/OpenGene/fastp",
-	"title": "github/OpenGene/fastp",
-	"url": " https://rseng.github.io/software/repository/github/OpenGene/fastp",
-	"content": "An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)"
+	"github/rodluger/starry_process": {
+	"id": "github/rodluger/starry_process",
+	"title": "github/rodluger/starry_process",
+	"url": " https://rseng.github.io/software/repository/github/rodluger/starry_process",
+	"content": "interpretable gaussian processes for stellar light curves"
 	},
-	"github/OpenGene/fastv": {
-	"id": "github/OpenGene/fastv",
-	"title": "github/OpenGene/fastv",
-	"url": " https://rseng.github.io/software/repository/github/OpenGene/fastv",
-	"content": "An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19."
+	"github/rodluger/everest": {
+	"id": "github/rodluger/everest",
+	"title": "github/rodluger/everest",
+	"url": " https://rseng.github.io/software/repository/github/rodluger/everest",
+	"content": "De-trending of K2 Light curves"
 	},
-	"github/agombolay/ribose-map": {
-	"id": "github/agombolay/ribose-map",
-	"title": "github/agombolay/ribose-map",
-	"url": " https://rseng.github.io/software/repository/github/agombolay/ribose-map",
-	"content": "None"
+	"github/DrDaveShaw/INCHEM-Py": {
+	"id": "github/DrDaveShaw/INCHEM-Py",
+	"title": "github/DrDaveShaw/INCHEM-Py",
+	"url": " https://rseng.github.io/software/repository/github/DrDaveShaw/INCHEM-Py",
+	"content": "The INdoor CHEMical model in Python (INCHEM-Py) is an open source and accessible box-model built to give researchers deeper insight into the chemical mechanisms behind indoor air chemistry."
 	},
 	"github/Bios4Biol/intronSeeker": {
 	"id": "github/Bios4Biol/intronSeeker",
@@ -5829,449 +4995,497 @@
 	"url": " https://rseng.github.io/software/repository/github/Bios4Biol/intronSeeker",
 	"content": "IntronSeeker identifies potentially retained introns in de novo RNA-seq assembly  in order to quantify and remove them."
 	},
-	"github/institut-de-genomique/HAPO-G": {
-	"id": "github/institut-de-genomique/HAPO-G",
-	"title": "github/institut-de-genomique/HAPO-G",
-	"url": " https://rseng.github.io/software/repository/github/institut-de-genomique/HAPO-G",
-	"content": "Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads."
+	"github/qiime2/q2-vsearch": {
+	"id": "github/qiime2/q2-vsearch",
+	"title": "github/qiime2/q2-vsearch",
+	"url": " https://rseng.github.io/software/repository/github/qiime2/q2-vsearch",
+	"content": "vsearch plugin for QIIME 2"
 	},
-	"github/aikubo/LinkingLines": {
-	"id": "github/aikubo/LinkingLines",
-	"title": "github/aikubo/LinkingLines",
-	"url": " https://rseng.github.io/software/repository/github/aikubo/LinkingLines",
-	"content": "Link and Cluster Cartesian Line Segments"
+	"github/ebundhoo/TAGOPSIN": {
+	"id": "github/ebundhoo/TAGOPSIN",
+	"title": "github/ebundhoo/TAGOPSIN",
+	"url": " https://rseng.github.io/software/repository/github/ebundhoo/TAGOPSIN",
+	"content": "Data(base) integration using the data warehousing approach"
 	},
-	"github/zengzhenhuan/GFNet": {
-	"id": "github/zengzhenhuan/GFNet",
-	"title": "github/zengzhenhuan/GFNet",
-	"url": " https://rseng.github.io/software/repository/github/zengzhenhuan/GFNet",
+	"github/BenMql/coral": {
+	"id": "github/BenMql/coral",
+	"title": "github/BenMql/coral",
+	"url": " https://rseng.github.io/software/repository/github/BenMql/coral",
+	"content": "Parallel spectral solver for partial differential equations in the plane layer geometry. "
+	},
+	"github/elsner/arkcos": {
+	"id": "github/elsner/arkcos",
+	"title": "github/elsner/arkcos",
+	"url": " https://rseng.github.io/software/repository/github/elsner/arkcos",
+	"content": "Accelerated radial kernel convolution on the sphere"
+	},
+	"github/FaaSr/FaaSr-package": {
+	"id": "github/FaaSr/FaaSr-package",
+	"title": "github/FaaSr/FaaSr-package",
+	"url": " https://rseng.github.io/software/repository/github/FaaSr/FaaSr-package",
+	"content": "Function-as-a-Service package for R"
+	},
+	"github/benyhh/ml-telescope-pointing-correction": {
+	"id": "github/benyhh/ml-telescope-pointing-correction",
+	"title": "github/benyhh/ml-telescope-pointing-correction",
+	"url": " https://rseng.github.io/software/repository/github/benyhh/ml-telescope-pointing-correction",
 	"content": "None"
 	},
-	"github/kyleaoman/martini": {
-	"id": "github/kyleaoman/martini",
-	"title": "github/kyleaoman/martini",
-	"url": " https://rseng.github.io/software/repository/github/kyleaoman/martini",
-	"content": "Mock spatially resolved spectral line observations of simulated galaxies. Documentation:"
+	"github/AlanRace/imzMLConverter": {
+	"id": "github/AlanRace/imzMLConverter",
+	"title": "github/AlanRace/imzMLConverter",
+	"url": " https://rseng.github.io/software/repository/github/AlanRace/imzMLConverter",
+	"content": "Tool for converting mass spectrometry data to the imzML format."
 	},
-	"github/webbjj/m2mcluster": {
-	"id": "github/webbjj/m2mcluster",
-	"title": "github/webbjj/m2mcluster",
-	"url": " https://rseng.github.io/software/repository/github/webbjj/m2mcluster",
-	"content": "A code for made to measure modelling of star clusters"
+	"github/winni2k/abeona": {
+	"id": "github/winni2k/abeona",
+	"title": "github/winni2k/abeona",
+	"url": " https://rseng.github.io/software/repository/github/winni2k/abeona",
+	"content": "abeona -- Abeona is the goddess of outward graph traversal"
 	},
-	"github/webbjj/clustertools": {
-	"id": "github/webbjj/clustertools",
-	"title": "github/webbjj/clustertools",
-	"url": " https://rseng.github.io/software/repository/github/webbjj/clustertools",
-	"content": "A Python package with tools for analysing star clusters."
+	"github/metawards/MetaWards": {
+	"id": "github/metawards/MetaWards",
+	"title": "github/metawards/MetaWards",
+	"url": " https://rseng.github.io/software/repository/github/metawards/MetaWards",
+	"content": "MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling"
 	},
-	"github/minzastro/unidam": {
-	"id": "github/minzastro/unidam",
-	"title": "github/minzastro/unidam",
-	"url": " https://rseng.github.io/software/repository/github/minzastro/unidam",
-	"content": "UniDAM tool: A Unified tool to estimate Distances, Ages, and Masses of stars from spectrophotometric, astrometric (Gaia) and asteroseismic data"
+	"github/stegmaja/TSE": {
+	"id": "github/stegmaja/TSE",
+	"title": "github/stegmaja/TSE",
+	"url": " https://rseng.github.io/software/repository/github/stegmaja/TSE",
+	"content": "Triple stellar evolution code"
 	},
-	"github/donaldRwilliams/GGMnonreg": {
-	"id": "github/donaldRwilliams/GGMnonreg",
-	"title": "github/donaldRwilliams/GGMnonreg",
-	"url": " https://rseng.github.io/software/repository/github/donaldRwilliams/GGMnonreg",
+	"github/zavolanlab/PAQR2": {
+	"id": "github/zavolanlab/PAQR2",
+	"title": "github/zavolanlab/PAQR2",
+	"url": " https://rseng.github.io/software/repository/github/zavolanlab/PAQR2",
+	"content": "Updated version of PAQR, which was previously available in the PAQR_KAPAC joint repository."
+	},
+	"github/quinlanW/dbMisLoc": {
+	"id": "github/quinlanW/dbMisLoc",
+	"title": "github/quinlanW/dbMisLoc",
+	"url": " https://rseng.github.io/software/repository/github/quinlanW/dbMisLoc",
 	"content": "None"
 	},
-	"github/donaldRwilliams/BGGM": {
-	"id": "github/donaldRwilliams/BGGM",
-	"title": "github/donaldRwilliams/BGGM",
-	"url": " https://rseng.github.io/software/repository/github/donaldRwilliams/BGGM",
-	"content": "Bayesian Gaussian Graphical Models"
+	"github/UAMCAntwerpen/LEADD": {
+	"id": "github/UAMCAntwerpen/LEADD",
+	"title": "github/UAMCAntwerpen/LEADD",
+	"url": " https://rseng.github.io/software/repository/github/UAMCAntwerpen/LEADD",
+	"content": "Lamarckian Evolutionary Algorithm for de novo Drug Design"
 	},
-	"github/morpheus-project/morpheus": {
-	"id": "github/morpheus-project/morpheus",
-	"title": "github/morpheus-project/morpheus",
-	"url": " https://rseng.github.io/software/repository/github/morpheus-project/morpheus",
-	"content": "A Library For Generating Morphological Semantic Segmentation Maps of Astronomical Images"
+	"github/chervias/DustFilaments": {
+	"id": "github/chervias/DustFilaments",
+	"title": "github/chervias/DustFilaments",
+	"url": " https://rseng.github.io/software/repository/github/chervias/DustFilaments",
+	"content": "Paint filaments to produce a thermal dust full sky map at mm frequencies"
 	},
-	"github/micahvista/MAMnet": {
-	"id": "github/micahvista/MAMnet",
-	"title": "github/micahvista/MAMnet",
-	"url": " https://rseng.github.io/software/repository/github/micahvista/MAMnet",
-	"content": "MAMnet uses a deep learning network to call genetic variants from third generation DNA sequencing data."
+	"github/OrchardLANL/DPFEHM.jl": {
+	"id": "github/OrchardLANL/DPFEHM.jl",
+	"title": "github/OrchardLANL/DPFEHM.jl",
+	"url": " https://rseng.github.io/software/repository/github/OrchardLANL/DPFEHM.jl",
+	"content": "DPFEHM: A Differentiable Subsurface Flow Simulator"
 	},
-	"github/isakro/shoredate": {
-	"id": "github/isakro/shoredate",
-	"title": "github/isakro/shoredate",
-	"url": " https://rseng.github.io/software/repository/github/isakro/shoredate",
-	"content": "R package for shoreline dating coastal Stone Age sites"
+	"github/CHES2023/PyMsOfa": {
+	"id": "github/CHES2023/PyMsOfa",
+	"title": "github/CHES2023/PyMsOfa",
+	"url": " https://rseng.github.io/software/repository/github/CHES2023/PyMsOfa",
+	"content": "a Python package for the Standards of Fundamental Astronomy (SOFA) service"
 	},
-	"github/clauswilke/PeptideBuilder": {
-	"id": "github/clauswilke/PeptideBuilder",
-	"title": "github/clauswilke/PeptideBuilder",
-	"url": " https://rseng.github.io/software/repository/github/clauswilke/PeptideBuilder",
-	"content": "A simple Python library to generate model peptides"
+	"github/DavidLapous/multipers": {
+	"id": "github/DavidLapous/multipers",
+	"title": "github/DavidLapous/multipers",
+	"url": " https://rseng.github.io/software/repository/github/DavidLapous/multipers",
+	"content": "[NeurIPS2023,ICML2024] Multiparameter Persistence for Machine Learning "
 	},
-	"github/MartianColonist/POSEIDON": {
-	"id": "github/MartianColonist/POSEIDON",
-	"title": "github/MartianColonist/POSEIDON",
-	"url": " https://rseng.github.io/software/repository/github/MartianColonist/POSEIDON",
-	"content": "Multidimensional atmospheric retrieval of exoplanet spectra."
+	"github/alesantuz/musclesyneRgies": {
+	"id": "github/alesantuz/musclesyneRgies",
+	"title": "github/alesantuz/musclesyneRgies",
+	"url": " https://rseng.github.io/software/repository/github/alesantuz/musclesyneRgies",
+	"content": "R package to extract muscle synergies from electromyogram"
 	},
-	"github/MartianColonist/Cthulhu": {
-	"id": "github/MartianColonist/Cthulhu",
-	"title": "github/MartianColonist/Cthulhu",
-	"url": " https://rseng.github.io/software/repository/github/MartianColonist/Cthulhu",
-	"content": "A Python package to calculate cross sections for substellar atmospheres"
+	"github/mlipatov/paint_atmospheres": {
+	"id": "github/mlipatov/paint_atmospheres",
+	"title": "github/mlipatov/paint_atmospheres",
+	"url": " https://rseng.github.io/software/repository/github/mlipatov/paint_atmospheres",
+	"content": "Synthetic spectra of rotating stars"
 	},
-	"github/WBK-Robotics/pybullet_industrial": {
-	"id": "github/WBK-Robotics/pybullet_industrial",
-	"title": "github/WBK-Robotics/pybullet_industrial",
-	"url": " https://rseng.github.io/software/repository/github/WBK-Robotics/pybullet_industrial",
-	"content": "A simulation package extending pybullet for industrial robot applications"
+	"github/JacobBumgarner/VesselVio": {
+	"id": "github/JacobBumgarner/VesselVio",
+	"title": "github/JacobBumgarner/VesselVio",
+	"url": " https://rseng.github.io/software/repository/github/JacobBumgarner/VesselVio",
+	"content": "VesselVio is an open-source application for the analysis and visualization of segmented vasculature datasets"
 	},
-	"github/exciting/excitingtools": {
-	"id": "github/exciting/excitingtools",
-	"title": "github/exciting/excitingtools",
-	"url": " https://rseng.github.io/software/repository/github/exciting/excitingtools",
-	"content": "An exciting Workflow Tool"
+	"github/karel-brinda/ococo": {
+	"id": "github/karel-brinda/ococo",
+	"title": "github/karel-brinda/ococo",
+	"url": " https://rseng.github.io/software/repository/github/karel-brinda/ococo",
+	"content": "Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream."
 	},
-	"github/adammoss/supernovae": {
-	"id": "github/adammoss/supernovae",
-	"title": "github/adammoss/supernovae",
-	"url": " https://rseng.github.io/software/repository/github/adammoss/supernovae",
-	"content": "None"
+	"github/heracles-ec/heracles": {
+	"id": "github/heracles-ec/heracles",
+	"title": "github/heracles-ec/heracles",
+	"url": " https://rseng.github.io/software/repository/github/heracles-ec/heracles",
+	"content": "Harmonic-space statistics on the sphere"
 	},
-	"github/vpc-ccg/genion": {
-	"id": "github/vpc-ccg/genion",
-	"title": "github/vpc-ccg/genion",
-	"url": " https://rseng.github.io/software/repository/github/vpc-ccg/genion",
-	"content": "GENe fusION"
+	"github/user29A/CCDLAB": {
+	"id": "github/user29A/CCDLAB",
+	"title": "github/user29A/CCDLAB",
+	"url": " https://rseng.github.io/software/repository/github/user29A/CCDLAB",
+	"content": "FITS image interaction, world coordinate solving, point source extraction, photometry, etc.  See the github Wiki link below for more info. If you require CCDLAB for UVIT, please ensure you have the UVIT Calibration Database which you can find at the CCDLAB Wiki link below."
+	},
+	"github/user29A/fastrometry": {
+	"id": "github/user29A/fastrometry",
+	"title": "github/user29A/fastrometry",
+	"url": " https://rseng.github.io/software/repository/github/user29A/fastrometry",
+	"content": "Fast Automatic World Coordinate Solution Solver. See the github Wiki link below for more info."
 	},
-	"github/vpc-ccg/calib": {
-	"id": "github/vpc-ccg/calib",
-	"title": "github/vpc-ccg/calib",
-	"url": " https://rseng.github.io/software/repository/github/vpc-ccg/calib",
-	"content": "clusters paired-end reads using their barcodes and sequences."
+	"github/user29A/JPFITS": {
+	"id": "github/user29A/JPFITS",
+	"title": "github/user29A/JPFITS",
+	"url": " https://rseng.github.io/software/repository/github/user29A/JPFITS",
+	"content": "FITS File interaction written in Visual Studio C# .Net, compatible across all .Net platforms. JPFITS is not based on any other implementations and is written from the ground-up, consistent with the FITS standard, designed to interact with FITS files as object-oriented structures. See the github Wiki link below for more info."
 	},
-	"github/vpc-ccg/svict": {
-	"id": "github/vpc-ccg/svict",
-	"title": "github/vpc-ccg/svict",
-	"url": " https://rseng.github.io/software/repository/github/vpc-ccg/svict",
-	"content": "Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA"
+	"github/tylunel/pvpumpingsystem": {
+	"id": "github/tylunel/pvpumpingsystem",
+	"title": "github/tylunel/pvpumpingsystem",
+	"url": " https://rseng.github.io/software/repository/github/tylunel/pvpumpingsystem",
+	"content": "Provides tools for modeling photovoltaic water pumping system"
 	},
-	"github/jmackereth/orbit-estimation": {
-	"id": "github/jmackereth/orbit-estimation",
-	"title": "github/jmackereth/orbit-estimation",
-	"url": " https://rseng.github.io/software/repository/github/jmackereth/orbit-estimation",
-	"content": "calculating fast orbital parameters using the Stäckel approximation"
+	"github/mpeel/fastcc": {
+	"id": "github/mpeel/fastcc",
+	"title": "github/mpeel/fastcc",
+	"url": " https://rseng.github.io/software/repository/github/mpeel/fastcc",
+	"content": "Fast colour corrections for Planck/WMAP/QUIJOTE etc."
 	},
-	"github/surhudm/savitzky_golay_with_errors": {
-	"id": "github/surhudm/savitzky_golay_with_errors",
-	"title": "github/surhudm/savitzky_golay_with_errors",
-	"url": " https://rseng.github.io/software/repository/github/surhudm/savitzky_golay_with_errors",
-	"content": "Improving the Savitzky-Golay filtering in the presence of noisy data"
+	"github/4pisky/fourpisky-core": {
+	"id": "github/4pisky/fourpisky-core",
+	"title": "github/4pisky/fourpisky-core",
+	"url": " https://rseng.github.io/software/repository/github/4pisky/fourpisky-core",
+	"content": "Core code defining alert handling, etc for the 4PiSky voevent hub."
 	},
-	"github/surhudm/aum": {
-	"id": "github/surhudm/aum",
-	"title": "github/surhudm/aum",
-	"url": " https://rseng.github.io/software/repository/github/surhudm/aum",
-	"content": "aum"
+	"github/nikhil-sarin/redback": {
+	"id": "github/nikhil-sarin/redback",
+	"title": "github/nikhil-sarin/redback",
+	"url": " https://rseng.github.io/software/repository/github/nikhil-sarin/redback",
+	"content": "A Bayesian inference software package for end-to-end fitting and interpretation of electromagnetic transients"
 	},
-	"github/bihealth/sodar_core": {
-	"id": "github/bihealth/sodar_core",
-	"title": "github/bihealth/sodar_core",
-	"url": " https://rseng.github.io/software/repository/github/bihealth/sodar_core",
-	"content": "Django-based framework for building scientific data management web apps."
+	"github/SunilAnandatheertha/PXO": {
+	"id": "github/SunilAnandatheertha/PXO",
+	"title": "github/SunilAnandatheertha/PXO",
+	"url": " https://rseng.github.io/software/repository/github/SunilAnandatheertha/PXO",
+	"content": "PXO (Poly-XTAL Operations). Generate, analyze and export complex 2D space partitions like metallic grain structures"
 	},
-	"github/LTeinturier/Cloud-Killer-": {
-	"id": "github/LTeinturier/Cloud-Killer-",
-	"title": "github/LTeinturier/Cloud-Killer-",
-	"url": " https://rseng.github.io/software/repository/github/LTeinturier/Cloud-Killer-",
-	"content": "Project cloud killer "
+	"github/egstrom/cluster-in-a-box": {
+	"id": "github/egstrom/cluster-in-a-box",
+	"title": "github/egstrom/cluster-in-a-box",
+	"url": " https://rseng.github.io/software/repository/github/egstrom/cluster-in-a-box",
+	"content": "Statistical model of protostellar clusters"
 	},
-	"github/popgenmethods/smcpp": {
-	"id": "github/popgenmethods/smcpp",
-	"title": "github/popgenmethods/smcpp",
-	"url": " https://rseng.github.io/software/repository/github/popgenmethods/smcpp",
-	"content": "SMC++ infers population history from whole-genome sequence data."
+	"github/nhurleywalker/fits_warp": {
+	"id": "github/nhurleywalker/fits_warp",
+	"title": "github/nhurleywalker/fits_warp",
+	"url": " https://rseng.github.io/software/repository/github/nhurleywalker/fits_warp",
+	"content": "Warp catalogues and images to dedistort the effects of the ionosphere"
 	},
-	"github/codidact/qpixel": {
-	"id": "github/codidact/qpixel",
-	"title": "github/codidact/qpixel",
-	"url": " https://rseng.github.io/software/repository/github/codidact/qpixel",
-	"content": "Q&amp;A-based community knowledge-sharing software"
+	"github/DJArmstrong/TransitSOM": {
+	"id": "github/DJArmstrong/TransitSOM",
+	"title": "github/DJArmstrong/TransitSOM",
+	"url": " https://rseng.github.io/software/repository/github/DJArmstrong/TransitSOM",
+	"content": "A Self-Organising Map for Kepler and K2 Transits"
 	},
-	"github/milnus/Corekaburra": {
-	"id": "github/milnus/Corekaburra",
-	"title": "github/milnus/Corekaburra",
-	"url": " https://rseng.github.io/software/repository/github/milnus/Corekaburra",
-	"content": "Program to find core gene consensus synteny, hotspots between these, and construct spatially aware multiple sequence alignments of core genes "
+	"github/ThibaultFillion/strengths": {
+	"id": "github/ThibaultFillion/strengths",
+	"title": "github/ThibaultFillion/strengths",
+	"url": " https://rseng.github.io/software/repository/github/ThibaultFillion/strengths",
+	"content": "inhomogeneous reaction diffusion python package"
 	},
-	"github/milnus/Magphi": {
-	"id": "github/milnus/Magphi",
-	"title": "github/milnus/Magphi",
-	"url": " https://rseng.github.io/software/repository/github/milnus/Magphi",
-	"content": "Tool intended to pull out sequences and annotations between insertion sites specified by the user."
+	"github/delve-team/delve": {
+	"id": "github/delve-team/delve",
+	"title": "github/delve-team/delve",
+	"url": " https://rseng.github.io/software/repository/github/delve-team/delve",
+	"content": "PyTorch model training and layer saturation monitor"
 	},
-	"github/engyasin/Offline_MOT": {
-	"id": "github/engyasin/Offline_MOT",
-	"title": "github/engyasin/Offline_MOT",
-	"url": " https://rseng.github.io/software/repository/github/engyasin/Offline_MOT",
-	"content": "Multiple traffic entities detection and tracking from bird-view drone stationary  videos https://engyasin.github.io/Offline_MOT/"
+	"github/agree019/DarkCapPy": {
+	"id": "github/agree019/DarkCapPy",
+	"title": "github/agree019/DarkCapPy",
+	"url": " https://rseng.github.io/software/repository/github/agree019/DarkCapPy",
+	"content": "None"
 	},
-	"github/TRIQS/solid_dmft": {
-	"id": "github/TRIQS/solid_dmft",
-	"title": "github/TRIQS/solid_dmft",
-	"url": " https://rseng.github.io/software/repository/github/TRIQS/solid_dmft",
-	"content": "solid_dmft is a versatile python wrapper to perform DFT+DMFT calculations utilizing the TRIQS software library."
+	"github/Toloka/crowd-kit": {
+	"id": "github/Toloka/crowd-kit",
+	"title": "github/Toloka/crowd-kit",
+	"url": " https://rseng.github.io/software/repository/github/Toloka/crowd-kit",
+	"content": "Control the quality of your labeled data with the Python tools you already know."
 	},
-	"github/broadinstitute/picard": {
-	"id": "github/broadinstitute/picard",
-	"title": "github/broadinstitute/picard",
-	"url": " https://rseng.github.io/software/repository/github/broadinstitute/picard",
-	"content": "A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF."
+	"github/pytoolz/toolz": {
+	"id": "github/pytoolz/toolz",
+	"title": "github/pytoolz/toolz",
+	"url": " https://rseng.github.io/software/repository/github/pytoolz/toolz",
+	"content": "A functional standard library for Python."
 	},
-	"github/broadinstitute/CellBender": {
-	"id": "github/broadinstitute/CellBender",
-	"title": "github/broadinstitute/CellBender",
-	"url": " https://rseng.github.io/software/repository/github/broadinstitute/CellBender",
-	"content": "a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data."
+	"github/nboley/idr": {
+	"id": "github/nboley/idr",
+	"title": "github/nboley/idr",
+	"url": " https://rseng.github.io/software/repository/github/nboley/idr",
+	"content": "IDR "
 	},
-	"github/broadinstitute/Drop-seq": {
-	"id": "github/broadinstitute/Drop-seq",
-	"title": "github/broadinstitute/Drop-seq",
-	"url": " https://rseng.github.io/software/repository/github/broadinstitute/Drop-seq",
-	"content": "Java tools for analyzing Drop-seq data"
+	"github/odlomax/spamcart-dev": {
+	"id": "github/odlomax/spamcart-dev",
+	"title": "github/odlomax/spamcart-dev",
+	"url": " https://rseng.github.io/software/repository/github/odlomax/spamcart-dev",
+	"content": "Development repository for SPAMCART radiative transfer code"
 	},
-	"github/broadinstitute/cromwell": {
-	"id": "github/broadinstitute/cromwell",
-	"title": "github/broadinstitute/cromwell",
-	"url": " https://rseng.github.io/software/repository/github/broadinstitute/cromwell",
-	"content": "Scientific workflow engine designed for simplicity &amp; scalability. Trivially transition between one off use cases to massive scale production environments"
+	"github/PhaseTracer/PhaseTracer": {
+	"id": "github/PhaseTracer/PhaseTracer",
+	"title": "github/PhaseTracer/PhaseTracer",
+	"url": " https://rseng.github.io/software/repository/github/PhaseTracer/PhaseTracer",
+	"content": "PhaseTracer is a C++ software package for mapping out cosmological phases, and potential transitions between them, for Standard Model extensions with any number of scalar fields."
 	},
-	"github/broadinstitute/gatk": {
-	"id": "github/broadinstitute/gatk",
-	"title": "github/broadinstitute/gatk",
-	"url": " https://rseng.github.io/software/repository/github/broadinstitute/gatk",
-	"content": "Official code repository for GATK versions 4 and up"
+	"github/joshjchayes/TransitFit": {
+	"id": "github/joshjchayes/TransitFit",
+	"title": "github/joshjchayes/TransitFit",
+	"url": " https://rseng.github.io/software/repository/github/joshjchayes/TransitFit",
+	"content": "Transit light curve fitting using nested sampling"
 	},
-	"github/broadinstitute/wot": {
-	"id": "github/broadinstitute/wot",
-	"title": "github/broadinstitute/wot",
-	"url": " https://rseng.github.io/software/repository/github/broadinstitute/wot",
-	"content": "A software package for analyzing snapshots of developmental processes"
+	"github/PixelgenTechnologies/pixelator": {
+	"id": "github/PixelgenTechnologies/pixelator",
+	"title": "github/PixelgenTechnologies/pixelator",
+	"url": " https://rseng.github.io/software/repository/github/PixelgenTechnologies/pixelator",
+	"content": "A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays."
 	},
-	"github/tomoyukif/MCPtaggR": {
-	"id": "github/tomoyukif/MCPtaggR",
-	"title": "github/tomoyukif/MCPtaggR",
-	"url": " https://rseng.github.io/software/repository/github/tomoyukif/MCPtaggR",
-	"content": "None"
+	"github/oneilsh/tidytensor": {
+	"id": "github/oneilsh/tidytensor",
+	"title": "github/oneilsh/tidytensor",
+	"url": " https://rseng.github.io/software/repository/github/oneilsh/tidytensor",
+	"content": "Utilities for multidimensional arrays as named hierarchical structures"
 	},
-	"github/ireis/PRF": {
-	"id": "github/ireis/PRF",
-	"title": "github/ireis/PRF",
-	"url": " https://rseng.github.io/software/repository/github/ireis/PRF",
-	"content": "Probabilistic Random Forest: A machine learning algorithm for noisy datasets"
+	"github/tidymodels/infer": {
+	"id": "github/tidymodels/infer",
+	"title": "github/tidymodels/infer",
+	"url": " https://rseng.github.io/software/repository/github/tidymodels/infer",
+	"content": "An R package for tidyverse-friendly statistical inference"
 	},
-	"github/mavrix93/LightCurvesClassifier": {
-	"id": "github/mavrix93/LightCurvesClassifier",
-	"title": "github/mavrix93/LightCurvesClassifier",
-	"url": " https://rseng.github.io/software/repository/github/mavrix93/LightCurvesClassifier",
-	"content": "Package for machine learning of astronomical objects such as light curves"
+	"github/tidymodels/stacks": {
+	"id": "github/tidymodels/stacks",
+	"title": "github/tidymodels/stacks",
+	"url": " https://rseng.github.io/software/repository/github/tidymodels/stacks",
+	"content": "An R package for tidy stacked ensemble modeling"
 	},
-	"github/TeamCOMPAS/COMPAS": {
-	"id": "github/TeamCOMPAS/COMPAS",
-	"title": "github/TeamCOMPAS/COMPAS",
-	"url": " https://rseng.github.io/software/repository/github/TeamCOMPAS/COMPAS",
-	"content": "COMPAS rapid binary population synthesis code"
+	"github/FengTaoSMU/MOBFinder": {
+	"id": "github/FengTaoSMU/MOBFinder",
+	"title": "github/FengTaoSMU/MOBFinder",
+	"url": " https://rseng.github.io/software/repository/github/FengTaoSMU/MOBFinder",
+	"content": "MOB typing for plasmid metagenomic fragments"
 	},
-	"github/FrancesBW/bellamy": {
-	"id": "github/FrancesBW/bellamy",
-	"title": "github/FrancesBW/bellamy",
-	"url": " https://rseng.github.io/software/repository/github/FrancesBW/bellamy",
+	"github/jgrembi/riskCommunicator": {
+	"id": "github/jgrembi/riskCommunicator",
+	"title": "github/jgrembi/riskCommunicator",
+	"url": " https://rseng.github.io/software/repository/github/jgrembi/riskCommunicator",
+	"content": "An R package for estimating risk differences and relative risk measures"
+	},
+	"github/francescoa97outlook/pyExoRaMa": {
+	"id": "github/francescoa97outlook/pyExoRaMa",
+	"title": "github/francescoa97outlook/pyExoRaMa",
+	"url": " https://rseng.github.io/software/repository/github/francescoa97outlook/pyExoRaMa",
 	"content": "None"
 	},
-	"github/xstarkit/mpi_xstar": {
-	"id": "github/xstarkit/mpi_xstar",
-	"title": "github/xstarkit/mpi_xstar",
-	"url": " https://rseng.github.io/software/repository/github/xstarkit/mpi_xstar",
-	"content": "MPI_XSTAR - MPI-based Parallelization of XSTAR Photoionization Program"
+	"github/haowang-astro/jetsimpy": {
+	"id": "github/haowang-astro/jetsimpy",
+	"title": "github/haowang-astro/jetsimpy",
+	"url": " https://rseng.github.io/software/repository/github/haowang-astro/jetsimpy",
+	"content": "A hydrodynamic model of gamma-ray burst jet and afterglow"
 	},
-	"github/ggonnella/rgfa": {
-	"id": "github/ggonnella/rgfa",
-	"title": "github/ggonnella/rgfa",
-	"url": " https://rseng.github.io/software/repository/github/ggonnella/rgfa",
-	"content": "Ruby library for handling GFA files"
+	"github/mswzeus/TargetNet": {
+	"id": "github/mswzeus/TargetNet",
+	"title": "github/mswzeus/TargetNet",
+	"url": " https://rseng.github.io/software/repository/github/mswzeus/TargetNet",
+	"content": "Official Pytorch implementation of TargetNet, Bioinformatics 2022"
 	},
-	"github/ggonnella/fastsubtrees": {
-	"id": "github/ggonnella/fastsubtrees",
-	"title": "github/ggonnella/fastsubtrees",
-	"url": " https://rseng.github.io/software/repository/github/ggonnella/fastsubtrees",
-	"content": "Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree."
+	"github/luxsrc/gray": {
+	"id": "github/luxsrc/gray",
+	"title": "github/luxsrc/gray",
+	"url": " https://rseng.github.io/software/repository/github/luxsrc/gray",
+	"content": "A general relativistic ray tracing code based on lux"
 	},
-	"github/ggonnella/gfapy": {
-	"id": "github/ggonnella/gfapy",
-	"title": "github/ggonnella/gfapy",
-	"url": " https://rseng.github.io/software/repository/github/ggonnella/gfapy",
-	"content": "Gfapy: a flexible and extensible software library for handling sequence graphs in Python"
+	"github/eabaron/synow": {
+	"id": "github/eabaron/synow",
+	"title": "github/eabaron/synow",
+	"url": " https://rseng.github.io/software/repository/github/eabaron/synow",
+	"content": "None"
 	},
-	"github/DariaGangardt/pAGN": {
-	"id": "github/DariaGangardt/pAGN",
-	"title": "github/DariaGangardt/pAGN",
-	"url": " https://rseng.github.io/software/repository/github/DariaGangardt/pAGN",
-	"content": "Python package to solve AGN disk model equations."
+	"github/aiidateam/aiida-core": {
+	"id": "github/aiidateam/aiida-core",
+	"title": "github/aiidateam/aiida-core",
+	"url": " https://rseng.github.io/software/repository/github/aiidateam/aiida-core",
+	"content": "The official repository for the AiiDA code"
 	},
-	"github/nick-youngblut/gtdb_to_taxdump": {
-	"id": "github/nick-youngblut/gtdb_to_taxdump",
-	"title": "github/nick-youngblut/gtdb_to_taxdump",
-	"url": " https://rseng.github.io/software/repository/github/nick-youngblut/gtdb_to_taxdump",
-	"content": "Convert GTDB taxonomy to NCBI taxdump format"
+	"github/aiidateam/kiwipy": {
+	"id": "github/aiidateam/kiwipy",
+	"title": "github/aiidateam/kiwipy",
+	"url": " https://rseng.github.io/software/repository/github/aiidateam/kiwipy",
+	"content": "A python messaging library for RPC, task queues and broadcasts"
 	},
-	"github/astrosmili/smili": {
-	"id": "github/astrosmili/smili",
-	"title": "github/astrosmili/smili",
-	"url": " https://rseng.github.io/software/repository/github/astrosmili/smili",
-	"content": "SMILI: Sparse Modeling Imaging Library for Interferometry"
+	"github/domenico-simone/rmlst_api": {
+	"id": "github/domenico-simone/rmlst_api",
+	"title": "github/domenico-simone/rmlst_api",
+	"url": " https://rseng.github.io/software/repository/github/domenico-simone/rmlst_api",
+	"content": "Run rmlst API through python script"
 	},
-	"github/nikhilroxtomar/FANet": {
-	"id": "github/nikhilroxtomar/FANet",
-	"title": "github/nikhilroxtomar/FANet",
-	"url": " https://rseng.github.io/software/repository/github/nikhilroxtomar/FANet",
-	"content": "FANet: A Feedback Attention Network for Improved Biomedical Image Segmentation [IEEE Transactions on Neural Networks and Learning Systems]"
+	"github/tp2vis/distribute": {
+	"id": "github/tp2vis/distribute",
+	"title": "github/tp2vis/distribute",
+	"url": " https://rseng.github.io/software/repository/github/tp2vis/distribute",
+	"content": "None"
 	},
-	"github/svi-opensource/libics": {
-	"id": "github/svi-opensource/libics",
-	"title": "github/svi-opensource/libics",
-	"url": " https://rseng.github.io/software/repository/github/svi-opensource/libics",
-	"content": "Image Cytometry Standard file reading and writing."
+	"github/SHTOOLS/SHTOOLS": {
+	"id": "github/SHTOOLS/SHTOOLS",
+	"title": "github/SHTOOLS/SHTOOLS",
+	"url": " https://rseng.github.io/software/repository/github/SHTOOLS/SHTOOLS",
+	"content": "SHTOOLS - Spherical Harmonic Tools"
 	},
-	"github/cma2015/iwa-miRNA": {
-	"id": "github/cma2015/iwa-miRNA",
-	"title": "github/cma2015/iwa-miRNA",
-	"url": " https://rseng.github.io/software/repository/github/cma2015/iwa-miRNA",
-	"content": "iwa-miRNA is a web-based platform for interactive annotation of plant miRNAs"
+	"github/mchalela/GriSPy": {
+	"id": "github/mchalela/GriSPy",
+	"title": "github/mchalela/GriSPy",
+	"url": " https://rseng.github.io/software/repository/github/mchalela/GriSPy",
+	"content": "GriSPy is a regular grid search algorithm for quick nearest-neighbor lookup."
 	},
-	"github/tongzhouxu/mashpit": {
-	"id": "github/tongzhouxu/mashpit",
-	"title": "github/tongzhouxu/mashpit",
-	"url": " https://rseng.github.io/software/repository/github/tongzhouxu/mashpit",
-	"content": ":pencil: Sketch-based surveillance platform"
+	"github/mmp2/megaman": {
+	"id": "github/mmp2/megaman",
+	"title": "github/mmp2/megaman",
+	"url": " https://rseng.github.io/software/repository/github/mmp2/megaman",
+	"content": "megaman: Manifold Learning for Millions of Points "
 	},
-	"github/mpiersonsmela/SeqVerify": {
-	"id": "github/mpiersonsmela/SeqVerify",
-	"title": "github/mpiersonsmela/SeqVerify",
-	"url": " https://rseng.github.io/software/repository/github/mpiersonsmela/SeqVerify",
-	"content": "Analyzes whole genome sequencing data for gene-editing verification"
+	"github/ABSESpy/ABSESpy": {
+	"id": "github/ABSESpy/ABSESpy",
+	"title": "github/ABSESpy/ABSESpy",
+	"url": " https://rseng.github.io/software/repository/github/ABSESpy/ABSESpy",
+	"content": "An Agent-based Social-ecological System python framework for coupling human-nature researches. "
 	},
-	"github/gilestrolab/pySolo": {
-	"id": "github/gilestrolab/pySolo",
-	"title": "github/gilestrolab/pySolo",
-	"url": " https://rseng.github.io/software/repository/github/gilestrolab/pySolo",
-	"content": "A software for sleep analysis in Drosophila"
+	"github/hamers/secularmultiple": {
+	"id": "github/hamers/secularmultiple",
+	"title": "github/hamers/secularmultiple",
+	"url": " https://rseng.github.io/software/repository/github/hamers/secularmultiple",
+	"content": "Code to model the secular evolution of a hierarchical multiple system"
 	},
-	"github/gilestrolab/ethoscope": {
-	"id": "github/gilestrolab/ethoscope",
-	"title": "github/gilestrolab/ethoscope",
-	"url": " https://rseng.github.io/software/repository/github/gilestrolab/ethoscope",
-	"content": "a platform from monitoring animal behaviour in real time from a raspberry pi"
+	"github/hamers/tpi": {
+	"id": "github/hamers/tpi",
+	"title": "github/hamers/tpi",
+	"url": " https://rseng.github.io/software/repository/github/hamers/tpi",
+	"content": "Test Particle Integrator: integrate test particles around a massive black hole"
 	},
-	"github/dask/dask": {
-	"id": "github/dask/dask",
-	"title": "github/dask/dask",
-	"url": " https://rseng.github.io/software/repository/github/dask/dask",
-	"content": "Parallel computing with task scheduling"
+	"github/pylops/pyproximal": {
+	"id": "github/pylops/pyproximal",
+	"title": "github/pylops/pyproximal",
+	"url": " https://rseng.github.io/software/repository/github/pylops/pyproximal",
+	"content": "PyProximal – Proximal Operators and Algorithms in Python"
 	},
-	"github/hungyipu/Odyssey": {
-	"id": "github/hungyipu/Odyssey",
-	"title": "github/hungyipu/Odyssey",
-	"url": " https://rseng.github.io/software/repository/github/hungyipu/Odyssey",
-	"content": "Odyssey: a public, GPU-based  GRRT (general relativistic radiative transfer) code"
+	"github/hasindu2008/slow5tools": {
+	"id": "github/hasindu2008/slow5tools",
+	"title": "github/hasindu2008/slow5tools",
+	"url": " https://rseng.github.io/software/repository/github/hasindu2008/slow5tools",
+	"content": "Slow5tools is a toolkit for converting (FAST5 &lt;-&gt; SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format."
 	},
-	"github/MrShoenel/metrics-as-scores": {
-	"id": "github/MrShoenel/metrics-as-scores",
-	"title": "github/MrShoenel/metrics-as-scores",
-	"url": " https://rseng.github.io/software/repository/github/MrShoenel/metrics-as-scores",
-	"content": "Contains the data and scripts needed for the application Metrics as Scores"
+	"github/fstrozzi/Fastool": {
+	"id": "github/fstrozzi/Fastool",
+	"title": "github/fstrozzi/Fastool",
+	"url": " https://rseng.github.io/software/repository/github/fstrozzi/Fastool",
+	"content": "Simple and quick FastQ and FastA tool for file reading and conversion"
 	},
-	"github/nipy/heudiconv": {
-	"id": "github/nipy/heudiconv",
-	"title": "github/nipy/heudiconv",
-	"url": " https://rseng.github.io/software/repository/github/nipy/heudiconv",
-	"content": "Flexible DICOM conversion into structured directory layouts"
+	"github/zoometh/iconr": {
+	"id": "github/zoometh/iconr",
+	"title": "github/zoometh/iconr",
+	"url": " https://rseng.github.io/software/repository/github/zoometh/iconr",
+	"content": "Formal methods to study Prehistory iconography"
 	},
-	"github/FaaSr/FaaSr-package": {
-	"id": "github/FaaSr/FaaSr-package",
-	"title": "github/FaaSr/FaaSr-package",
-	"url": " https://rseng.github.io/software/repository/github/FaaSr/FaaSr-package",
-	"content": "Function-as-a-Service package for R"
+	"github/rajeshmondal18/MAPS": {
+	"id": "github/rajeshmondal18/MAPS",
+	"title": "github/rajeshmondal18/MAPS",
+	"url": " https://rseng.github.io/software/repository/github/rajeshmondal18/MAPS",
+	"content": "The Multi-frequency Angular Power Spectrum (MAPS) estimator"
 	},
-	"github/mlarichardson/ramses2hsim": {
-	"id": "github/mlarichardson/ramses2hsim",
-	"title": "github/mlarichardson/ramses2hsim",
-	"url": " https://rseng.github.io/software/repository/github/mlarichardson/ramses2hsim",
-	"content": "A simulation pipeline for converting cosmological RAMSES simulations into input FITS cubes for the hsim pipeline."
+	"github/rajeshmondal18/FoF-Halo-finder": {
+	"id": "github/rajeshmondal18/FoF-Halo-finder",
+	"title": "github/rajeshmondal18/FoF-Halo-finder",
+	"url": " https://rseng.github.io/software/repository/github/rajeshmondal18/FoF-Halo-finder",
+	"content": "A code to identify the location and size of the gravitationally collapsed dark matter halos."
 	},
-	"github/mlarichardson/CosmosCanvas": {
-	"id": "github/mlarichardson/CosmosCanvas",
-	"title": "github/mlarichardson/CosmosCanvas",
-	"url": " https://rseng.github.io/software/repository/github/mlarichardson/CosmosCanvas",
-	"content": "A library that incorporates Gilles Ferrand&#39;s colourspace, creating useful colour maps for different astrophysical properties."
+	"github/rajeshmondal18/DviSukta": {
+	"id": "github/rajeshmondal18/DviSukta",
+	"title": "github/rajeshmondal18/DviSukta",
+	"url": " https://rseng.github.io/software/repository/github/rajeshmondal18/DviSukta",
+	"content": "A direct estimator of the bispectrum"
 	},
-	"github/elizakempton/Exo_Transmit": {
-	"id": "github/elizakempton/Exo_Transmit",
-	"title": "github/elizakempton/Exo_Transmit",
-	"url": " https://rseng.github.io/software/repository/github/elizakempton/Exo_Transmit",
-	"content": "Exo-Transmit radiative transfer code for calculating exoplanet transmission spectra"
+	"github/rajeshmondal18/ReionYuga": {
+	"id": "github/rajeshmondal18/ReionYuga",
+	"title": "github/rajeshmondal18/ReionYuga",
+	"url": " https://rseng.github.io/software/repository/github/rajeshmondal18/ReionYuga",
+	"content": "A semi-numerical code to generate the Epoch of Reionization (EoR) neutral Hydrogen (HI) field."
 	},
-	"github/SebastianBocquet/pygtc": {
-	"id": "github/SebastianBocquet/pygtc",
-	"title": "github/SebastianBocquet/pygtc",
-	"url": " https://rseng.github.io/software/repository/github/SebastianBocquet/pygtc",
-	"content": "Make a sweet giant triangle confusogram (GTC) plot"
+	"github/rajeshmondal18/N-body": {
+	"id": "github/rajeshmondal18/N-body",
+	"title": "github/rajeshmondal18/N-body",
+	"url": " https://rseng.github.io/software/repository/github/rajeshmondal18/N-body",
+	"content": "A code to compute the non-linear evolution of the cosmological matter density contrast."
 	},
-	"github/tfwillems/HipSTR": {
-	"id": "github/tfwillems/HipSTR",
-	"title": "github/tfwillems/HipSTR",
-	"url": " https://rseng.github.io/software/repository/github/tfwillems/HipSTR",
-	"content": "Genotype and phase short tandem repeats using Illumina whole-genome sequencing data"
+	"github/PabloVD/CosmoGraphNet": {
+	"id": "github/PabloVD/CosmoGraphNet",
+	"title": "github/PabloVD/CosmoGraphNet",
+	"url": " https://rseng.github.io/software/repository/github/PabloVD/CosmoGraphNet",
+	"content": "Graph Neural Networks to predict the cosmological parameters or the galaxy power spectrum from galaxy catalogs."
 	},
-	"github/michaeltouati/ESVM": {
-	"id": "github/michaeltouati/ESVM",
-	"title": "github/michaeltouati/ESVM",
-	"url": " https://rseng.github.io/software/repository/github/michaeltouati/ESVM",
-	"content": "Finite-volume Vlasov-Maxwell code to study for Plasma Physics simulations"
+	"github/PabloVD/HaloGraphNet": {
+	"id": "github/PabloVD/HaloGraphNet",
+	"title": "github/PabloVD/HaloGraphNet",
+	"url": " https://rseng.github.io/software/repository/github/PabloVD/HaloGraphNet",
+	"content": "Predict halo masses from simulations via graph neural networks"
 	},
-	"github/hamers/tpi": {
-	"id": "github/hamers/tpi",
-	"title": "github/hamers/tpi",
-	"url": " https://rseng.github.io/software/repository/github/hamers/tpi",
-	"content": "Test Particle Integrator: integrate test particles around a massive black hole"
+	"github/PabloVD/HAYASHI": {
+	"id": "github/PabloVD/HAYASHI",
+	"title": "github/PabloVD/HAYASHI",
+	"url": " https://rseng.github.io/software/repository/github/PabloVD/HAYASHI",
+	"content": "Python library for 21 cm forest computations."
+	},
+	"github/PabloVD/21cmDeepLearning": {
+	"id": "github/PabloVD/21cmDeepLearning",
+	"title": "github/PabloVD/21cmDeepLearning",
+	"url": " https://rseng.github.io/software/repository/github/PabloVD/21cmDeepLearning",
+	"content": "Python codes to extract the matter density field from a 21 cm map."
 	},
-	"github/hamers/secularmultiple": {
-	"id": "github/hamers/secularmultiple",
-	"title": "github/hamers/secularmultiple",
-	"url": " https://rseng.github.io/software/repository/github/hamers/secularmultiple",
-	"content": "Code to model the secular evolution of a hierarchical multiple system"
+	"github/AlexanderBartholomaeus/smORFer": {
+	"id": "github/AlexanderBartholomaeus/smORFer",
+	"title": "github/AlexanderBartholomaeus/smORFer",
+	"url": " https://rseng.github.io/software/repository/github/AlexanderBartholomaeus/smORFer",
+	"content": "None"
 	},
-	"github/nservant/HiC-Pro": {
-	"id": "github/nservant/HiC-Pro",
-	"title": "github/nservant/HiC-Pro",
-	"url": " https://rseng.github.io/software/repository/github/nservant/HiC-Pro",
-	"content": "HiC-Pro: An optimized and flexible pipeline for Hi-C data processing"
+	"github/stefanoMP/massiveGST": {
+	"id": "github/stefanoMP/massiveGST",
+	"title": "github/stefanoMP/massiveGST",
+	"url": " https://rseng.github.io/software/repository/github/stefanoMP/massiveGST",
+	"content": "None"
 	},
-	"github/Astroua/TurbuStat": {
-	"id": "github/Astroua/TurbuStat",
-	"title": "github/Astroua/TurbuStat",
-	"url": " https://rseng.github.io/software/repository/github/Astroua/TurbuStat",
-	"content": "Statistics of Turbulence Python Package"
+	"github/mdolab/pygeo": {
+	"id": "github/mdolab/pygeo",
+	"title": "github/mdolab/pygeo",
+	"url": " https://rseng.github.io/software/repository/github/mdolab/pygeo",
+	"content": "pyGeo provides geometric design variables and constraints suitable for gradient-based optimization."
 	},
-	"github/Astroua/SCIMES": {
-	"id": "github/Astroua/SCIMES",
-	"title": "github/Astroua/SCIMES",
-	"url": " https://rseng.github.io/software/repository/github/Astroua/SCIMES",
-	"content": "Spectral Clustering for Interstellar Molecular Emission Segmentation"
+	"github/SchedMD/slurm": {
+	"id": "github/SchedMD/slurm",
+	"title": "github/SchedMD/slurm",
+	"url": " https://rseng.github.io/software/repository/github/SchedMD/slurm",
+	"content": "Slurm: A Highly Scalable Workload Manager"
 	},
-	"github/soundata/soundata": {
-	"id": "github/soundata/soundata",
-	"title": "github/soundata/soundata",
-	"url": " https://rseng.github.io/software/repository/github/soundata/soundata",
-	"content": "Python library for downloading, loading &amp; working with sound datasets"
+	"github/MASILab/pyPheWAS": {
+	"id": "github/MASILab/pyPheWAS",
+	"title": "github/MASILab/pyPheWAS",
+	"url": " https://rseng.github.io/software/repository/github/MASILab/pyPheWAS",
+	"content": "MASI Lab Implementation of PheWAS in Python"
+	},
+	"github/Battery-Intelligence-Lab/dtw-cpp": {
+	"id": "github/Battery-Intelligence-Lab/dtw-cpp",
+	"title": "github/Battery-Intelligence-Lab/dtw-cpp",
+	"url": " https://rseng.github.io/software/repository/github/Battery-Intelligence-Lab/dtw-cpp",
+	"content": "DTWC++"
 	},
 	"github/kundajelab/phantompeakqualtools": {
 	"id": "github/kundajelab/phantompeakqualtools",
@@ -6279,1307 +5493,1343 @@
 	"url": " https://rseng.github.io/software/repository/github/kundajelab/phantompeakqualtools",
 	"content": "This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length or characteristic tag shift values in these assays."
 	},
-	"github/pmlmodelling/nctoolkit": {
-	"id": "github/pmlmodelling/nctoolkit",
-	"title": "github/pmlmodelling/nctoolkit",
-	"url": " https://rseng.github.io/software/repository/github/pmlmodelling/nctoolkit",
-	"content": "A Python package for netCDF analysis and post-processing"
+	"github/gmzsebastian/FLEET": {
+	"id": "github/gmzsebastian/FLEET",
+	"title": "github/gmzsebastian/FLEET",
+	"url": " https://rseng.github.io/software/repository/github/gmzsebastian/FLEET",
+	"content": "Finding Luminous and Exotic Extragalactic Transients"
 	},
-	"github/guangtunbenzhu/NonnegMFPy": {
-	"id": "github/guangtunbenzhu/NonnegMFPy",
-	"title": "github/guangtunbenzhu/NonnegMFPy",
-	"url": " https://rseng.github.io/software/repository/github/guangtunbenzhu/NonnegMFPy",
-	"content": "Vectorized Nonnegative Matrix Factorization with heteroscedastic uncertainties and missing data"
+	"github/RaRe-Technologies/gensim": {
+	"id": "github/RaRe-Technologies/gensim",
+	"title": "github/RaRe-Technologies/gensim",
+	"url": " https://rseng.github.io/software/repository/github/RaRe-Technologies/gensim",
+	"content": "Topic Modelling for Humans"
 	},
-	"github/guangtunbenzhu/SetCoverPy": {
-	"id": "github/guangtunbenzhu/SetCoverPy",
-	"title": "github/guangtunbenzhu/SetCoverPy",
-	"url": " https://rseng.github.io/software/repository/github/guangtunbenzhu/SetCoverPy",
-	"content": "A heuristic solver for the set cover problem"
+	"github/sundarjhu/2-DUST": {
+	"id": "github/sundarjhu/2-DUST",
+	"title": "github/sundarjhu/2-DUST",
+	"url": " https://rseng.github.io/software/repository/github/sundarjhu/2-DUST",
+	"content": "2-DUST is a general-purpose dust radiative transfer code for an axisymmetric system that reveals the global energetics of dust grains in the shell and the 2-D projected morphologies of the shell that are strongly dependent on the mixed effects of the axisymmetric dust distribution and inclination angle. It can be used to model a variety of axisymmetric astronomical dust systems."
 	},
-	"github/abacusorg/zeldovich-PLT": {
-	"id": "github/abacusorg/zeldovich-PLT",
-	"title": "github/abacusorg/zeldovich-PLT",
-	"url": " https://rseng.github.io/software/repository/github/abacusorg/zeldovich-PLT",
-	"content": "Generates initial conditions for cosmological N-body simulations, optionally applying Particle Linear Theory corrections."
+	"github/fripon/freeture": {
+	"id": "github/fripon/freeture",
+	"title": "github/fripon/freeture",
+	"url": " https://rseng.github.io/software/repository/github/fripon/freeture",
+	"content": "A Free software to capTure meteors "
 	},
-	"github/raspishake/rsudp": {
-	"id": "github/raspishake/rsudp",
-	"title": "github/raspishake/rsudp",
-	"url": " https://rseng.github.io/software/repository/github/raspishake/rsudp",
-	"content": "Continuous visual display, sudden motion monitoring, and historical replay of Raspberry Shake data"
+	"github/GRTLCollaboration/GRFolres": {
+	"id": "github/GRTLCollaboration/GRFolres",
+	"title": "github/GRTLCollaboration/GRFolres",
+	"url": " https://rseng.github.io/software/repository/github/GRTLCollaboration/GRFolres",
+	"content": "Extension to GRChombo for Modified Gravity simulations"
 	},
-	"github/ruanjue/wtdbg2": {
-	"id": "github/ruanjue/wtdbg2",
-	"title": "github/ruanjue/wtdbg2",
-	"url": " https://rseng.github.io/software/repository/github/ruanjue/wtdbg2",
-	"content": "Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly"
+	"github/GRTLCollaboration/GRChombo": {
+	"id": "github/GRTLCollaboration/GRChombo",
+	"title": "github/GRTLCollaboration/GRChombo",
+	"url": " https://rseng.github.io/software/repository/github/GRTLCollaboration/GRChombo",
+	"content": "An AMR based open-source code for numerical relativity simulations."
 	},
-	"github/arup-group/pam": {
-	"id": "github/arup-group/pam",
-	"title": "github/arup-group/pam",
-	"url": " https://rseng.github.io/software/repository/github/arup-group/pam",
-	"content": "Generate and modify transport demand scenarios via a Python API."
+	"github/GRTLCollaboration/GRDzhadzha": {
+	"id": "github/GRTLCollaboration/GRDzhadzha",
+	"title": "github/GRTLCollaboration/GRDzhadzha",
+	"url": " https://rseng.github.io/software/repository/github/GRTLCollaboration/GRDzhadzha",
+	"content": "A code to evolve matter on curved spacetimes with an analytic time and space dependence, e.g. black holes"
 	},
-	"github/entangled/entangled": {
-	"id": "github/entangled/entangled",
-	"title": "github/entangled/entangled",
-	"url": " https://rseng.github.io/software/repository/github/entangled/entangled",
-	"content": "bi-directional tangle daemon for literate programming"
+	"github/yangxiaolinyn/Lemon": {
+	"id": "github/yangxiaolinyn/Lemon",
+	"title": "github/yangxiaolinyn/Lemon",
+	"url": " https://rseng.github.io/software/repository/github/yangxiaolinyn/Lemon",
+	"content": "None"
 	},
-	"github/equib/equib": {
-	"id": "github/equib/equib",
-	"title": "github/equib/equib",
-	"url": " https://rseng.github.io/software/repository/github/equib/equib",
-	"content": "EQUIB - Fortran Program for Equilibrium Atomic Populations and Line Emissivities"
+	"github/alexdobin/STAR": {
+	"id": "github/alexdobin/STAR",
+	"title": "github/alexdobin/STAR",
+	"url": " https://rseng.github.io/software/repository/github/alexdobin/STAR",
+	"content": "RNA-seq aligner"
 	},
-	"github/equib/pyEQUIB": {
-	"id": "github/equib/pyEQUIB",
-	"title": "github/equib/pyEQUIB",
-	"url": " https://rseng.github.io/software/repository/github/equib/pyEQUIB",
-	"content": "pyEQUIB - Python Package for Plasma Diagnostics and Abundance Analysis"
+	"github/cy-xu/cosmic-conn": {
+	"id": "github/cy-xu/cosmic-conn",
+	"title": "github/cy-xu/cosmic-conn",
+	"url": " https://rseng.github.io/software/repository/github/cy-xu/cosmic-conn",
+	"content": "Cosmic-CoNN: A Cosmic Ray Detection Deep-Learning Framework, Dataset, and Toolkit"
 	},
-	"github/tanner-trickle/EXCEED-DM": {
-	"id": "github/tanner-trickle/EXCEED-DM",
-	"title": "github/tanner-trickle/EXCEED-DM",
-	"url": " https://rseng.github.io/software/repository/github/tanner-trickle/EXCEED-DM",
-	"content": "EXCEED-DM: EXtended Calculation of Electronic Excitations for Direct detection of Dark Matter"
+	"github/Jingxuan97/nemesispy": {
+	"id": "github/Jingxuan97/nemesispy",
+	"title": "github/Jingxuan97/nemesispy",
+	"url": " https://rseng.github.io/software/repository/github/Jingxuan97/nemesispy",
+	"content": "Tools for modelling exoplanet spectra"
 	},
-	"github/bcerutti/Zeltron-code": {
-	"id": "github/bcerutti/Zeltron-code",
-	"title": "github/bcerutti/Zeltron-code",
-	"url": " https://rseng.github.io/software/repository/github/bcerutti/Zeltron-code",
+	"github/daddeptr/Needlets": {
+	"id": "github/daddeptr/Needlets",
+	"title": "github/daddeptr/Needlets",
+	"url": " https://rseng.github.io/software/repository/github/daddeptr/Needlets",
 	"content": "None"
 	},
-	"github/miguelcarcamov/csromer": {
-	"id": "github/miguelcarcamov/csromer",
-	"title": "github/miguelcarcamov/csromer",
-	"url": " https://rseng.github.io/software/repository/github/miguelcarcamov/csromer",
-	"content": "Compressive Sensing and Optimization Framework to reconstruct Faraday Depth signals"
+	"github/LukeDuttweiler/skipTrack": {
+	"id": "github/LukeDuttweiler/skipTrack",
+	"title": "github/LukeDuttweiler/skipTrack",
+	"url": " https://rseng.github.io/software/repository/github/LukeDuttweiler/skipTrack",
+	"content": "Bayesian Hierarchical Models for Identifying Non-Adherence in Mobile Menstrual Cycle Tracking"
 	},
-	"github/miguelcarcamov/gpuvmem": {
-	"id": "github/miguelcarcamov/gpuvmem",
-	"title": "github/miguelcarcamov/gpuvmem",
-	"url": " https://rseng.github.io/software/repository/github/miguelcarcamov/gpuvmem",
-	"content": "GPU Framework for Radio Astronomical Image Synthesis"
+	"github/qutip/qutip": {
+	"id": "github/qutip/qutip",
+	"title": "github/qutip/qutip",
+	"url": " https://rseng.github.io/software/repository/github/qutip/qutip",
+	"content": "QuTiP: Quantum Toolbox in Python"
 	},
-	"github/PeterDenton/ANA": {
-	"id": "github/PeterDenton/ANA",
-	"title": "github/PeterDenton/ANA",
-	"url": " https://rseng.github.io/software/repository/github/PeterDenton/ANA",
-	"content": "Astrophysical Neutrino Anisotropy"
+	"github/yuliang419/AstroNet-Triage": {
+	"id": "github/yuliang419/AstroNet-Triage",
+	"title": "github/yuliang419/AstroNet-Triage",
+	"url": " https://rseng.github.io/software/repository/github/yuliang419/AstroNet-Triage",
+	"content": "A Neural Network for TESS Light Curve Triage"
 	},
-	"github/santeripuranen/SpydrPick": {
-	"id": "github/santeripuranen/SpydrPick",
-	"title": "github/santeripuranen/SpydrPick",
-	"url": " https://rseng.github.io/software/repository/github/santeripuranen/SpydrPick",
-	"content": "SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure."
+	"github/yuliang419/AstroNet-Vetting": {
+	"id": "github/yuliang419/AstroNet-Vetting",
+	"title": "github/yuliang419/AstroNet-Vetting",
+	"url": " https://rseng.github.io/software/repository/github/yuliang419/AstroNet-Vetting",
+	"content": "A Neural Network for TESS Light Curve Vetting"
 	},
-	"github/zhanglabtools/CASAVA": {
-	"id": "github/zhanglabtools/CASAVA",
-	"title": "github/zhanglabtools/CASAVA",
-	"url": " https://rseng.github.io/software/repository/github/zhanglabtools/CASAVA",
-	"content": "Resources of our paper CASAVA"
+	"github/PlanetHunters/tkmatrix": {
+	"id": "github/PlanetHunters/tkmatrix",
+	"title": "github/PlanetHunters/tkmatrix",
+	"url": " https://rseng.github.io/software/repository/github/PlanetHunters/tkmatrix",
+	"content": "Transits Inject and Recovery Multi-phase Analysis"
 	},
-	"github/paulsengroup/hictk": {
-	"id": "github/paulsengroup/hictk",
-	"title": "github/paulsengroup/hictk",
-	"url": " https://rseng.github.io/software/repository/github/paulsengroup/hictk",
-	"content": "Blazing fast toolkit to work with .hic and .cool files"
+	"github/sevenstarknight/LINEARSupervisedClassification": {
+	"id": "github/sevenstarknight/LINEARSupervisedClassification",
+	"title": "github/sevenstarknight/LINEARSupervisedClassification",
+	"url": " https://rseng.github.io/software/repository/github/sevenstarknight/LINEARSupervisedClassification",
+	"content": "The initial analysis of LINEAR data using supervised classification methods."
 	},
-	"github/paulsengroup/hictkR": {
-	"id": "github/paulsengroup/hictkR",
-	"title": "github/paulsengroup/hictkR",
-	"url": " https://rseng.github.io/software/repository/github/paulsengroup/hictkR",
-	"content": "R bindings for hictk: read .cool and .hic files directly from R"
+	"github/sevenstarknight/SSMM": {
+	"id": "github/sevenstarknight/SSMM",
+	"title": "github/sevenstarknight/SSMM",
+	"url": " https://rseng.github.io/software/repository/github/sevenstarknight/SSMM",
+	"content": "Variable Star Signature Classification using Slotted Symbolic Markov Modeling"
 	},
-	"github/paulsengroup/StripePy": {
-	"id": "github/paulsengroup/StripePy",
-	"title": "github/paulsengroup/StripePy",
-	"url": " https://rseng.github.io/software/repository/github/paulsengroup/StripePy",
-	"content": "StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning"
+	"github/sevenstarknight/OCDetector": {
+	"id": "github/sevenstarknight/OCDetector",
+	"title": "github/sevenstarknight/OCDetector",
+	"url": " https://rseng.github.io/software/repository/github/sevenstarknight/OCDetector",
+	"content": "O&#39;Connell Effect Detector using Push-Pull Learning"
 	},
-	"github/paulsengroup/hictkpy": {
-	"id": "github/paulsengroup/hictkpy",
-	"title": "github/paulsengroup/hictkpy",
-	"url": " https://rseng.github.io/software/repository/github/paulsengroup/hictkpy",
-	"content": "Python bindings for hictk: read and write .cool and .hic files directly from Python"
+	"github/sevenstarknight/VariableStarAnalysis": {
+	"id": "github/sevenstarknight/VariableStarAnalysis",
+	"title": "github/sevenstarknight/VariableStarAnalysis",
+	"url": " https://rseng.github.io/software/repository/github/sevenstarknight/VariableStarAnalysis",
+	"content": "None"
 	},
-	"github/mpip/pfft": {
-	"id": "github/mpip/pfft",
-	"title": "github/mpip/pfft",
-	"url": " https://rseng.github.io/software/repository/github/mpip/pfft",
-	"content": "Parallel fast Fourier transforms"
+	"github/HajkD/LTRpred": {
+	"id": "github/HajkD/LTRpred",
+	"title": "github/HajkD/LTRpred",
+	"url": " https://rseng.github.io/software/repository/github/HajkD/LTRpred",
+	"content": "De novo annotation of intact retrotransposons"
 	},
-	"github/OBrink/RanDepict": {
-	"id": "github/OBrink/RanDepict",
-	"title": "github/OBrink/RanDepict",
-	"url": " https://rseng.github.io/software/repository/github/OBrink/RanDepict",
-	"content": "This repository contains RanDepict, an easy-to-use utility to generate a big variety of chemical structure depictions (random depiction styles and image augmentations) based on RDKit, CDK, Indigo and PIKAChU."
+	"github/SeaIce-Math/SubZero": {
+	"id": "github/SeaIce-Math/SubZero",
+	"title": "github/SeaIce-Math/SubZero",
+	"url": " https://rseng.github.io/software/repository/github/SeaIce-Math/SubZero",
+	"content": "Discrete element sea ice model"
 	},
-	"github/KBNLresearch/ochre": {
-	"id": "github/KBNLresearch/ochre",
-	"title": "github/KBNLresearch/ochre",
-	"url": " https://rseng.github.io/software/repository/github/KBNLresearch/ochre",
-	"content": "Toolbox for OCR post-correction"
+	"github/matthias-mayr/Cartesian-Impedance-Controller": {
+	"id": "github/matthias-mayr/Cartesian-Impedance-Controller",
+	"title": "github/matthias-mayr/Cartesian-Impedance-Controller",
+	"url": " https://rseng.github.io/software/repository/github/matthias-mayr/Cartesian-Impedance-Controller",
+	"content": "A C++ implementation of Cartesian impedance control for torque-controlled manipulators with ROS bindings."
 	},
-	"github/pyranges/pyrle": {
-	"id": "github/pyranges/pyrle",
-	"title": "github/pyranges/pyrle",
-	"url": " https://rseng.github.io/software/repository/github/pyranges/pyrle",
-	"content": "Numerical Run Length Encoding and Arithmetic in Cython"
+	"github/barentsen/dave": {
+	"id": "github/barentsen/dave",
+	"title": "github/barentsen/dave",
+	"url": " https://rseng.github.io/software/repository/github/barentsen/dave",
+	"content": "Discovery And Vetting of K2 Exoplanets"
 	},
-	"github/jellis18/PTMCMCSampler": {
-	"id": "github/jellis18/PTMCMCSampler",
-	"title": "github/jellis18/PTMCMCSampler",
-	"url": " https://rseng.github.io/software/repository/github/jellis18/PTMCMCSampler",
-	"content": "Parallel tempering MCMC sampler package written in Python"
+	"github/barentsen/k2flix": {
+	"id": "github/barentsen/k2flix",
+	"title": "github/barentsen/k2flix",
+	"url": " https://rseng.github.io/software/repository/github/barentsen/k2flix",
+	"content": "Create beautiful quicklook movies from the pixel data observed by NASA&#39;s Kepler/K2/TESS spacecraft."
 	},
-	"github/witseie/fpgaperm": {
-	"id": "github/witseie/fpgaperm",
-	"title": "github/witseie/fpgaperm",
-	"url": " https://rseng.github.io/software/repository/github/witseie/fpgaperm",
-	"content": "Permutation testing for GWAS using FPGAs"
+	"github/conchoecia/pauvre": {
+	"id": "github/conchoecia/pauvre",
+	"title": "github/conchoecia/pauvre",
+	"url": " https://rseng.github.io/software/repository/github/conchoecia/pauvre",
+	"content": "Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads."
 	},
-	"github/SegataLab/lefse": {
-	"id": "github/SegataLab/lefse",
-	"title": "github/SegataLab/lefse",
-	"url": " https://rseng.github.io/software/repository/github/SegataLab/lefse",
-	"content": "determine features of organisms, clades, taxonomic units, genes"
+	"github/ColemanRHarris/mxnorm": {
+	"id": "github/ColemanRHarris/mxnorm",
+	"title": "github/ColemanRHarris/mxnorm",
+	"url": " https://rseng.github.io/software/repository/github/ColemanRHarris/mxnorm",
+	"content": "R package to normalize multiplexed imaging data."
 	},
-	"github/mpound/pdrtpy": {
-	"id": "github/mpound/pdrtpy",
-	"title": "github/mpound/pdrtpy",
-	"url": " https://rseng.github.io/software/repository/github/mpound/pdrtpy",
-	"content": "PhotoDissociation Region Toolbox Python module"
+	"github/vallima/PRyMordial": {
+	"id": "github/vallima/PRyMordial",
+	"title": "github/vallima/PRyMordial",
+	"url": " https://rseng.github.io/software/repository/github/vallima/PRyMordial",
+	"content": "A Python package for precise computations of BBN within and beyond the Standard Model"
 	},
-	"github/mpound/comb": {
-	"id": "github/mpound/comb",
-	"title": "github/mpound/comb",
-	"url": " https://rseng.github.io/software/repository/github/mpound/comb",
-	"content": "The AT&amp;T Bell labs singledish radio astronomy data reduction package"
+	"github/aneeshnaik/lintsampler": {
+	"id": "github/aneeshnaik/lintsampler",
+	"title": "github/aneeshnaik/lintsampler",
+	"url": " https://rseng.github.io/software/repository/github/aneeshnaik/lintsampler",
+	"content": "Efficient random sampling via linear interpolation."
 	},
-	"github/weizhongli/cdhit": {
-	"id": "github/weizhongli/cdhit",
-	"title": "github/weizhongli/cdhit",
-	"url": " https://rseng.github.io/software/repository/github/weizhongli/cdhit",
-	"content": "clusters and compares protein or nucleotide sequences."
+	"github/aneeshnaik/spam": {
+	"id": "github/aneeshnaik/spam",
+	"title": "github/aneeshnaik/spam",
+	"url": " https://rseng.github.io/software/repository/github/aneeshnaik/spam",
+	"content": "spam is a Python 3 package, used to search for imprints of Hu-Sawicki f(R) gravity in the rotation curves of the SPARC sample."
 	},
-	"github/sjteresi/TE_Density": {
-	"id": "github/sjteresi/TE_Density",
-	"title": "github/sjteresi/TE_Density",
-	"url": " https://rseng.github.io/software/repository/github/sjteresi/TE_Density",
-	"content": "Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4"
+	"github/matthiaslee/Xmatch": {
+	"id": "github/matthiaslee/Xmatch",
+	"title": "github/matthiaslee/Xmatch",
+	"url": " https://rseng.github.io/software/repository/github/matthiaslee/Xmatch",
+	"content": "a GPU accelerated astronomic catalog cross-matching tool"
 	},
-	"github/genouest/biomaj-daemon": {
-	"id": "github/genouest/biomaj-daemon",
-	"title": "github/genouest/biomaj-daemon",
-	"url": " https://rseng.github.io/software/repository/github/genouest/biomaj-daemon",
-	"content": "micro service to manage biomaj client requests and bank updates"
+	"github/kyleaoman/martini": {
+	"id": "github/kyleaoman/martini",
+	"title": "github/kyleaoman/martini",
+	"url": " https://rseng.github.io/software/repository/github/kyleaoman/martini",
+	"content": "Mock spatially resolved spectral line observations of simulated galaxies. Documentation:"
 	},
-	"github/genouest/biomaj-cli": {
-	"id": "github/genouest/biomaj-cli",
-	"title": "github/genouest/biomaj-cli",
-	"url": " https://rseng.github.io/software/repository/github/genouest/biomaj-cli",
-	"content": "CLI for BioMAJ"
+	"github/rkiman/wdwarfdate": {
+	"id": "github/rkiman/wdwarfdate",
+	"title": "github/rkiman/wdwarfdate",
+	"url": " https://rseng.github.io/software/repository/github/rkiman/wdwarfdate",
+	"content": "Calculate white dwarfs ages from effective temperature and surface gravity."
 	},
-	"github/prioritizr/wdpar": {
-	"id": "github/prioritizr/wdpar",
-	"title": "github/prioritizr/wdpar",
-	"url": " https://rseng.github.io/software/repository/github/prioritizr/wdpar",
-	"content": "Interface to the World Database on Protected Areas"
+	"github/VIB-PSB/MINI-EX": {
+	"id": "github/VIB-PSB/MINI-EX",
+	"title": "github/VIB-PSB/MINI-EX",
+	"url": " https://rseng.github.io/software/repository/github/VIB-PSB/MINI-EX",
+	"content": "Motif-Informed Network Inference of cell type-specific gene regulatory networks in plants"
 	},
-	"github/Starfish-develop/Starfish": {
-	"id": "github/Starfish-develop/Starfish",
-	"title": "github/Starfish-develop/Starfish",
-	"url": " https://rseng.github.io/software/repository/github/Starfish-develop/Starfish",
-	"content": "Tools for Flexible Spectroscopic Inference"
+	"github/davek44/Glimmer-MG": {
+	"id": "github/davek44/Glimmer-MG",
+	"title": "github/davek44/Glimmer-MG",
+	"url": " https://rseng.github.io/software/repository/github/davek44/Glimmer-MG",
+	"content": "Gene prediction in metagenomic sequences using Glimmer augmented by phylogenetic classification and clustering"
 	},
-	"github/drwaseemsheikh/audiometry": {
-	"id": "github/drwaseemsheikh/audiometry",
-	"title": "github/drwaseemsheikh/audiometry",
-	"url": " https://rseng.github.io/software/repository/github/drwaseemsheikh/audiometry",
-	"content": "Audiometry is an application framework written in C# and based on WPF and .NET that enables accurate digital recording, search, analysis, graphical visualization, and reproduction of human audio-vestibular impairment test data to assist in hearing loss or disability diagnosis."
+	"github/IPK-BIT/divbrowse": {
+	"id": "github/IPK-BIT/divbrowse",
+	"title": "github/IPK-BIT/divbrowse",
+	"url": " https://rseng.github.io/software/repository/github/IPK-BIT/divbrowse",
+	"content": "A web application for interactive exploration and analysis of very large SNP matrices"
 	},
-	"github/cochran4/GEMB": {
-	"id": "github/cochran4/GEMB",
-	"title": "github/cochran4/GEMB",
-	"url": " https://rseng.github.io/software/repository/github/cochran4/GEMB",
-	"content": "Gene-set enrichment with math biology"
+	"github/kostergroup/SIMsalabim": {
+	"id": "github/kostergroup/SIMsalabim",
+	"title": "github/kostergroup/SIMsalabim",
+	"url": " https://rseng.github.io/software/repository/github/kostergroup/SIMsalabim",
+	"content": "A 1D drift-diffusion simulator for semiconductor devices (LEDs, solar cells, diodes, organics, perovskites)"
 	},
-	"github/carlosborca/CrystaLattE": {
-	"id": "github/carlosborca/CrystaLattE",
-	"title": "github/carlosborca/CrystaLattE",
-	"url": " https://rseng.github.io/software/repository/github/carlosborca/CrystaLattE",
-	"content": "Set of scripts to automate the calculation of crystal lattice energies."
+	"github/BartoszBartmanski/StoSpa2": {
+	"id": "github/BartoszBartmanski/StoSpa2",
+	"title": "github/BartoszBartmanski/StoSpa2",
+	"url": " https://rseng.github.io/software/repository/github/BartoszBartmanski/StoSpa2",
+	"content": "A C++ software package for stochastic simulations of spatially extended systems"
 	},
-	"github/dunnkers/fseval": {
-	"id": "github/dunnkers/fseval",
-	"title": "github/dunnkers/fseval",
-	"url": " https://rseng.github.io/software/repository/github/dunnkers/fseval",
-	"content": "Benchmarking framework for Feature Selection and Feature Ranking algorithms 🚀"
+	"github/timoast/signac": {
+	"id": "github/timoast/signac",
+	"title": "github/timoast/signac",
+	"url": " https://rseng.github.io/software/repository/github/timoast/signac",
+	"content": "R toolkit for the analysis of single-cell chromatin data"
 	},
-	"github/epruesse/SINA": {
-	"id": "github/epruesse/SINA",
-	"title": "github/epruesse/SINA",
-	"url": " https://rseng.github.io/software/repository/github/epruesse/SINA",
-	"content": "SINA - Reference based multiple sequence alignment"
+	"github/MESAHub/mesa": {
+	"id": "github/MESAHub/mesa",
+	"title": "github/MESAHub/mesa",
+	"url": " https://rseng.github.io/software/repository/github/MESAHub/mesa",
+	"content": "Modules for Experiments in Stellar Astrophysics"
 	},
-	"github/amberbiology/scribl": {
-	"id": "github/amberbiology/scribl",
-	"title": "github/amberbiology/scribl",
-	"url": " https://rseng.github.io/software/repository/github/amberbiology/scribl",
-	"content": "Semantic Capture of Relationships In Biological Literature (scribl) "
+	"github/atomec-project/atoMEC": {
+	"id": "github/atomec-project/atoMEC",
+	"title": "github/atomec-project/atoMEC",
+	"url": " https://rseng.github.io/software/repository/github/atomec-project/atoMEC",
+	"content": "Python-based average-atom code for simulations of high energy density phenomena such as in warm dense matter."
 	},
-	"github/astroweaver/the_farmer": {
-	"id": "github/astroweaver/the_farmer",
-	"title": "github/astroweaver/the_farmer",
-	"url": " https://rseng.github.io/software/repository/github/astroweaver/the_farmer",
-	"content": "The Farmer"
+	"github/MikkelSchubert/adapterremoval": {
+	"id": "github/MikkelSchubert/adapterremoval",
+	"title": "github/MikkelSchubert/adapterremoval",
+	"url": " https://rseng.github.io/software/repository/github/MikkelSchubert/adapterremoval",
+	"content": "AdapterRemoval v2 - rapid adapter trimming, identification, and read merging"
 	},
-	"github/jaschers/damspi": {
-	"id": "github/jaschers/damspi",
-	"title": "github/jaschers/damspi",
-	"url": " https://rseng.github.io/software/repository/github/jaschers/damspi",
+	"github/AMReX-Combustion/PeleLMeX": {
+	"id": "github/AMReX-Combustion/PeleLMeX",
+	"title": "github/AMReX-Combustion/PeleLMeX",
+	"url": " https://rseng.github.io/software/repository/github/AMReX-Combustion/PeleLMeX",
+	"content": "An adaptive mesh hydrodynamics simulation code for low Mach number reacting flows without level sub-cycling."
+	},
+	"github/TheMillerLab/genetex": {
+	"id": "github/TheMillerLab/genetex",
+	"title": "github/TheMillerLab/genetex",
+	"url": " https://rseng.github.io/software/repository/github/TheMillerLab/genetex",
 	"content": "None"
 	},
-	"github/lynx-x-ray-observatory/soxs": {
-	"id": "github/lynx-x-ray-observatory/soxs",
-	"title": "github/lynx-x-ray-observatory/soxs",
-	"url": " https://rseng.github.io/software/repository/github/lynx-x-ray-observatory/soxs",
-	"content": "SOXS: Simulated Observations of X-ray Sources"
+	"github/Bonfanti88/MCMCI": {
+	"id": "github/Bonfanti88/MCMCI",
+	"title": "github/Bonfanti88/MCMCI",
+	"url": " https://rseng.github.io/software/repository/github/Bonfanti88/MCMCI",
+	"content": "A code to fully characterise an exoplanetary system (Bonfanti &amp; Gillon, 2020)"
+	},
+	"github/ycwu1030/EvoEMD": {
+	"id": "github/ycwu1030/EvoEMD",
+	"title": "github/ycwu1030/EvoEMD",
+	"url": " https://rseng.github.io/software/repository/github/ycwu1030/EvoEMD",
+	"content": "Evolution with an Early Matter-Dominated era"
 	},
-	"github/Circuitscape/Omniscape.jl": {
-	"id": "github/Circuitscape/Omniscape.jl",
-	"title": "github/Circuitscape/Omniscape.jl",
-	"url": " https://rseng.github.io/software/repository/github/Circuitscape/Omniscape.jl",
-	"content": "Functions to compute omnidirectional landscape connectivity using circuit theory and the Omniscape algorithm."
+	"github/FINNGEN/lavaa-react": {
+	"id": "github/FINNGEN/lavaa-react",
+	"title": "github/FINNGEN/lavaa-react",
+	"url": " https://rseng.github.io/software/repository/github/FINNGEN/lavaa-react",
+	"content": "lavaa-react"
 	},
-	"github/seclark/RHT": {
-	"id": "github/seclark/RHT",
-	"title": "github/seclark/RHT",
-	"url": " https://rseng.github.io/software/repository/github/seclark/RHT",
-	"content": "The Rolling Hough Transform"
+	"github/PCMSolver/pcmsolver": {
+	"id": "github/PCMSolver/pcmsolver",
+	"title": "github/PCMSolver/pcmsolver",
+	"url": " https://rseng.github.io/software/repository/github/PCMSolver/pcmsolver",
+	"content": "An API for the Polarizable Continuum Model"
 	},
-	"github/marco-oliva/pfp": {
-	"id": "github/marco-oliva/pfp",
-	"title": "github/marco-oliva/pfp",
-	"url": " https://rseng.github.io/software/repository/github/marco-oliva/pfp",
-	"content": "Prefix Free Parsing"
+	"github/fair-data/fairdatapoint-client": {
+	"id": "github/fair-data/fairdatapoint-client",
+	"title": "github/fair-data/fairdatapoint-client",
+	"url": " https://rseng.github.io/software/repository/github/fair-data/fairdatapoint-client",
+	"content": "Interact with your resources (catalogs/datasets/distributions) in a FDP using python"
 	},
-	"github/mtazzari/uvplot": {
-	"id": "github/mtazzari/uvplot",
-	"title": "github/mtazzari/uvplot",
-	"url": " https://rseng.github.io/software/repository/github/mtazzari/uvplot",
-	"content": "A simple package to make nice visibility plots and to export visibilites from MS tables"
+	"github/hippalectryon-0/pyloggrid": {
+	"id": "github/hippalectryon-0/pyloggrid",
+	"title": "github/hippalectryon-0/pyloggrid",
+	"url": " https://rseng.github.io/software/repository/github/hippalectryon-0/pyloggrid",
+	"content": "Public docs for the python package pyloggrid"
 	},
-	"github/mtazzari/galario": {
-	"id": "github/mtazzari/galario",
-	"title": "github/mtazzari/galario",
-	"url": " https://rseng.github.io/software/repository/github/mtazzari/galario",
-	"content": "Gpu Accelerated Library for Analysing Radio Interferometer Observations"
+	"github/kircherlab/ReMM": {
+	"id": "github/kircherlab/ReMM",
+	"title": "github/kircherlab/ReMM",
+	"url": " https://rseng.github.io/software/repository/github/kircherlab/ReMM",
+	"content": "ReMM score snakemake workflow "
 	},
-	"github/mtazzari/binary": {
-	"id": "github/mtazzari/binary",
-	"title": "github/mtazzari/binary",
-	"url": " https://rseng.github.io/software/repository/github/mtazzari/binary",
-	"content": "This program computes the evolution of an accretion disc interacting with a binary system. Used in Tazzari, Lodato (2015)."
+	"github/kircherlab/cfDNA-UniFlow": {
+	"id": "github/kircherlab/cfDNA-UniFlow",
+	"title": "github/kircherlab/cfDNA-UniFlow",
+	"url": " https://rseng.github.io/software/repository/github/kircherlab/cfDNA-UniFlow",
+	"content": "Workflow for preprocessing cfDNA samples."
 	},
-	"github/aberer/RogueNaRok": {
-	"id": "github/aberer/RogueNaRok",
-	"title": "github/aberer/RogueNaRok",
-	"url": " https://rseng.github.io/software/repository/github/aberer/RogueNaRok",
-	"content": "A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf stability index and taxonomic instability index"
+	"github/3fon3fonov/exostriker": {
+	"id": "github/3fon3fonov/exostriker",
+	"title": "github/3fon3fonov/exostriker",
+	"url": " https://rseng.github.io/software/repository/github/3fon3fonov/exostriker",
+	"content": "Transit and Radial velocity Interactive Fitting tool for Orbital analysis and N-body simulations: The Exo-Striker"
 	},
-	"github/cuDisc/cuDisc": {
-	"id": "github/cuDisc/cuDisc",
-	"title": "github/cuDisc/cuDisc",
-	"url": " https://rseng.github.io/software/repository/github/cuDisc/cuDisc",
-	"content": "A CUDA-accelerated 2D code for protoplanetary disc evolution simulations"
+	"github/soerendip/ms-mint": {
+	"id": "github/soerendip/ms-mint",
+	"title": "github/soerendip/ms-mint",
+	"url": " https://rseng.github.io/software/repository/github/soerendip/ms-mint",
+	"content": "Interactive application for large-scale metabolomics (MS1). "
 	},
-	"github/quinlanW/dbMisLoc": {
-	"id": "github/quinlanW/dbMisLoc",
-	"title": "github/quinlanW/dbMisLoc",
-	"url": " https://rseng.github.io/software/repository/github/quinlanW/dbMisLoc",
-	"content": "None"
+	"github/KULL-Centre/DEERpredict": {
+	"id": "github/KULL-Centre/DEERpredict",
+	"title": "github/KULL-Centre/DEERpredict",
+	"url": " https://rseng.github.io/software/repository/github/KULL-Centre/DEERpredict",
+	"content": "Software for the prediction of DEER and PRE data from conformational ensembles."
 	},
-	"github/obreschkow/dftools": {
-	"id": "github/obreschkow/dftools",
-	"title": "github/obreschkow/dftools",
-	"url": " https://rseng.github.io/software/repository/github/obreschkow/dftools",
-	"content": "None"
+	"github/patrickfuchs/buildH": {
+	"id": "github/patrickfuchs/buildH",
+	"title": "github/patrickfuchs/buildH",
+	"url": " https://rseng.github.io/software/repository/github/patrickfuchs/buildH",
+	"content": ":computer: Build hydrogen atoms from united-atom molecular dynamics of lipids and calculate the order parameters."
 	},
-	"github/zavolanlab/PAQR2": {
-	"id": "github/zavolanlab/PAQR2",
-	"title": "github/zavolanlab/PAQR2",
-	"url": " https://rseng.github.io/software/repository/github/zavolanlab/PAQR2",
-	"content": "Updated version of PAQR, which was previously available in the PAQR_KAPAC joint repository."
+	"github/witseie/fpgaperm": {
+	"id": "github/witseie/fpgaperm",
+	"title": "github/witseie/fpgaperm",
+	"url": " https://rseng.github.io/software/repository/github/witseie/fpgaperm",
+	"content": "Permutation testing for GWAS using FPGAs"
 	},
-	"github/TommyJones/tidylda": {
-	"id": "github/TommyJones/tidylda",
-	"title": "github/TommyJones/tidylda",
-	"url": " https://rseng.github.io/software/repository/github/TommyJones/tidylda",
-	"content": "Implements an algorithim for Latent Dirichlet Allocation using style conventions from the [tidyverse](https://style.tidyverse.org/) and [tidymodels](https://tidymodels.github.io/model-implementation-principles/index.html). "
+	"github/Beuth-Erdelt/DBMS-Benchmarker": {
+	"id": "github/Beuth-Erdelt/DBMS-Benchmarker",
+	"title": "github/Beuth-Erdelt/DBMS-Benchmarker",
+	"url": " https://rseng.github.io/software/repository/github/Beuth-Erdelt/DBMS-Benchmarker",
+	"content": "DBMS-Benchmarker is a Python-based application-level blackbox benchmark tool for Database Management Systems (DBMS). It connects to a given list of DBMS (via JDBC) and runs a given list of parametrized and randomized (SQL) benchmark queries. Evaluations are available via a Python interface and on an interactive multi-dimensional dashboard."
 	},
-	"github/marbl/Krona": {
-	"id": "github/marbl/Krona",
-	"title": "github/marbl/Krona",
-	"url": " https://rseng.github.io/software/repository/github/marbl/Krona",
-	"content": "Interactively explore metagenomes and more from a web browser."
+	"github/schochastics/graphlayouts": {
+	"id": "github/schochastics/graphlayouts",
+	"title": "github/schochastics/graphlayouts",
+	"url": " https://rseng.github.io/software/repository/github/schochastics/graphlayouts",
+	"content": "new layout algorithms for network visualizations in R"
 	},
-	"github/marbl/Mash": {
-	"id": "github/marbl/Mash",
-	"title": "github/marbl/Mash",
-	"url": " https://rseng.github.io/software/repository/github/marbl/Mash",
-	"content": "Fast genome and metagenome distance estimation using MinHash"
+	"github/schochastics/signnet": {
+	"id": "github/schochastics/signnet",
+	"title": "github/schochastics/signnet",
+	"url": " https://rseng.github.io/software/repository/github/schochastics/signnet",
+	"content": "R package for signed networks"
 	},
-	"github/marbl/Winnowmap": {
-	"id": "github/marbl/Winnowmap",
-	"title": "github/marbl/Winnowmap",
-	"url": " https://rseng.github.io/software/repository/github/marbl/Winnowmap",
-	"content": "Long read / genome alignment software"
+	"github/schochastics/netrankr": {
+	"id": "github/schochastics/netrankr",
+	"title": "github/schochastics/netrankr",
+	"url": " https://rseng.github.io/software/repository/github/schochastics/netrankr",
+	"content": "An R package for network centrality"
 	},
-	"github/marbl/MashMap": {
-	"id": "github/marbl/MashMap",
-	"title": "github/marbl/MashMap",
-	"url": " https://rseng.github.io/software/repository/github/marbl/MashMap",
-	"content": "A fast approximate aligner for long DNA sequences"
+	"github/astrostat/Automark": {
+	"id": "github/astrostat/Automark",
+	"title": "github/astrostat/Automark",
+	"url": " https://rseng.github.io/software/repository/github/astrostat/Automark",
+	"content": "Automatic marking of marked Poisson process in astronomical high-dimensional datasets"
 	},
-	"github/miniufo/xinvert": {
-	"id": "github/miniufo/xinvert",
-	"title": "github/miniufo/xinvert",
-	"url": " https://rseng.github.io/software/repository/github/miniufo/xinvert",
-	"content": "Invert geophysical fluid dynamic problems (elliptic partial differential equations) using SOR iteration method."
+	"github/astrostat/LIRA": {
+	"id": "github/astrostat/LIRA",
+	"title": "github/astrostat/LIRA",
+	"url": " https://rseng.github.io/software/repository/github/astrostat/LIRA",
+	"content": "Low-counts Image Reconstruction and Analysis"
 	},
-	"github/PolyChord/PolyChordLite": {
-	"id": "github/PolyChord/PolyChordLite",
-	"title": "github/PolyChord/PolyChordLite",
-	"url": " https://rseng.github.io/software/repository/github/PolyChord/PolyChordLite",
-	"content": "Public version of PolyChord: See polychord.co.uk for PolyChordPro"
+	"github/astrostat/BASCS": {
+	"id": "github/astrostat/BASCS",
+	"title": "github/astrostat/BASCS",
+	"url": " https://rseng.github.io/software/repository/github/astrostat/BASCS",
+	"content": "Bayesian Separation of Close Sources"
 	},
-	"github/ivadomed/ivadomed": {
-	"id": "github/ivadomed/ivadomed",
-	"title": "github/ivadomed/ivadomed",
-	"url": " https://rseng.github.io/software/repository/github/ivadomed/ivadomed",
-	"content": "Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs."
+	"github/pnsaevik/effluent": {
+	"id": "github/pnsaevik/effluent",
+	"title": "github/pnsaevik/effluent",
+	"url": " https://rseng.github.io/software/repository/github/pnsaevik/effluent",
+	"content": "None"
 	},
-	"github/dr-joe-wirth/primerForge": {
-	"id": "github/dr-joe-wirth/primerForge",
-	"title": "github/dr-joe-wirth/primerForge",
-	"url": " https://rseng.github.io/software/repository/github/dr-joe-wirth/primerForge",
-	"content": "software to identify primers that can distinguish genomes"
+	"github/cameronliang/BayesVP": {
+	"id": "github/cameronliang/BayesVP",
+	"title": "github/cameronliang/BayesVP",
+	"url": " https://rseng.github.io/software/repository/github/cameronliang/BayesVP",
+	"content": "None"
 	},
-	"github/DarkQuestCosmology/dark_emulator_public": {
-	"id": "github/DarkQuestCosmology/dark_emulator_public",
-	"title": "github/DarkQuestCosmology/dark_emulator_public",
-	"url": " https://rseng.github.io/software/repository/github/DarkQuestCosmology/dark_emulator_public",
-	"content": "A cosmological tool for emulation of various basic statistics of dark matter haloes based on Dark Quest project (https://darkquestcosmology.github.io/)."
+	"github/insightsengineering/rbmi": {
+	"id": "github/insightsengineering/rbmi",
+	"title": "github/insightsengineering/rbmi",
+	"url": " https://rseng.github.io/software/repository/github/insightsengineering/rbmi",
+	"content": "Reference based multiple imputation R package"
 	},
-	"github/numba/numba": {
-	"id": "github/numba/numba",
-	"title": "github/numba/numba",
-	"url": " https://rseng.github.io/software/repository/github/numba/numba",
-	"content": "NumPy aware dynamic Python compiler using LLVM"
+	"github/sap218/jabberwocky": {
+	"id": "github/sap218/jabberwocky",
+	"title": "github/sap218/jabberwocky",
+	"url": " https://rseng.github.io/software/repository/github/sap218/jabberwocky",
+	"content": "toolkit for those nonsensical ontologies"
 	},
-	"github/LQYoLH/CnnCrispr": {
-	"id": "github/LQYoLH/CnnCrispr",
-	"title": "github/LQYoLH/CnnCrispr",
-	"url": " https://rseng.github.io/software/repository/github/LQYoLH/CnnCrispr",
-	"content": "A deep learning method for sgRNA off-target propensity prediction."
+	"github/gui11aume/starcode": {
+	"id": "github/gui11aume/starcode",
+	"title": "github/gui11aume/starcode",
+	"url": " https://rseng.github.io/software/repository/github/gui11aume/starcode",
+	"content": "All pairs search and sequence clustering"
 	},
-	"github/ocxtal/minialign": {
-	"id": "github/ocxtal/minialign",
-	"title": "github/ocxtal/minialign",
-	"url": " https://rseng.github.io/software/repository/github/ocxtal/minialign",
-	"content": "[IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long reads"
+	"github/PSims/BayesEoR": {
+	"id": "github/PSims/BayesEoR",
+	"title": "github/PSims/BayesEoR",
+	"url": " https://rseng.github.io/software/repository/github/PSims/BayesEoR",
+	"content": "Code to estimate the power spectrum of redshifted 21-cm emission from interferometric observations, within a Bayesian forward modelling framework."
 	},
-	"github/shbhuk/mrexo": {
-	"id": "github/shbhuk/mrexo",
-	"title": "github/shbhuk/mrexo",
-	"url": " https://rseng.github.io/software/repository/github/shbhuk/mrexo",
-	"content": "Non parametric Mass - Radius relationship for exoplanets"
+	"github/haiyang1986/TVAR": {
+	"id": "github/haiyang1986/TVAR",
+	"title": "github/haiyang1986/TVAR",
+	"url": " https://rseng.github.io/software/repository/github/haiyang1986/TVAR",
+	"content": "a deep learning approach for assessing tissue-specific functional effects of non-coding variants"
 	},
-	"github/shbhuk/barycorrpy": {
-	"id": "github/shbhuk/barycorrpy",
-	"title": "github/shbhuk/barycorrpy",
-	"url": " https://rseng.github.io/software/repository/github/shbhuk/barycorrpy",
-	"content": "Python version of Barycorr"
+	"github/jakevdp/wpca": {
+	"id": "github/jakevdp/wpca",
+	"title": "github/jakevdp/wpca",
+	"url": " https://rseng.github.io/software/repository/github/jakevdp/wpca",
+	"content": "Weighted Principal Component Analysis (PCA) in Python"
 	},
-	"github/pfaucon/PBSIM-PacBio-Simulator": {
-	"id": "github/pfaucon/PBSIM-PacBio-Simulator",
-	"title": "github/pfaucon/PBSIM-PacBio-Simulator",
-	"url": " https://rseng.github.io/software/repository/github/pfaucon/PBSIM-PacBio-Simulator",
-	"content": "This is an updated mirror of the original PacBio Read Simulator"
+	"github/sodascience/metasyn": {
+	"id": "github/sodascience/metasyn",
+	"title": "github/sodascience/metasyn",
+	"url": " https://rseng.github.io/software/repository/github/sodascience/metasyn",
+	"content": "Transparent and privacy-friendly synthetic data generation"
 	},
-	"github/leirufeng/iEnhancer-DCSV": {
-	"id": "github/leirufeng/iEnhancer-DCSV",
-	"title": "github/leirufeng/iEnhancer-DCSV",
-	"url": " https://rseng.github.io/software/repository/github/leirufeng/iEnhancer-DCSV",
+	"github/amromics/panta": {
+	"id": "github/amromics/panta",
+	"title": "github/amromics/panta",
+	"url": " https://rseng.github.io/software/repository/github/amromics/panta",
+	"content": "Pan-genome Analysis"
+	},
+	"github/Jesper-Karsten/MBASC": {
+	"id": "github/Jesper-Karsten/MBASC",
+	"title": "github/Jesper-Karsten/MBASC",
+	"url": " https://rseng.github.io/software/repository/github/Jesper-Karsten/MBASC",
 	"content": "None"
 	},
-	"github/fredericlemoine/goalign": {
-	"id": "github/fredericlemoine/goalign",
-	"title": "github/fredericlemoine/goalign",
-	"url": " https://rseng.github.io/software/repository/github/fredericlemoine/goalign",
-	"content": "Goalign is a set of command line tools and an API to manipulate multiple alignments. It is implemented in Go language."
+	"github/moritzobenauer/ProjectRaccoon": {
+	"id": "github/moritzobenauer/ProjectRaccoon",
+	"title": "github/moritzobenauer/ProjectRaccoon",
+	"url": " https://rseng.github.io/software/repository/github/moritzobenauer/ProjectRaccoon",
+	"content": "Automated construction of atomistic and coarse-grained models in the PDB format for polymer peptide conjugates."
 	},
-	"github/PENTACLE-Team/PENTACLE": {
-	"id": "github/PENTACLE-Team/PENTACLE",
-	"title": "github/PENTACLE-Team/PENTACLE",
-	"url": " https://rseng.github.io/software/repository/github/PENTACLE-Team/PENTACLE",
-	"content": "None"
+	"github/kazewong/flowMC": {
+	"id": "github/kazewong/flowMC",
+	"title": "github/kazewong/flowMC",
+	"url": " https://rseng.github.io/software/repository/github/kazewong/flowMC",
+	"content": "Normalizing-flow enhanced sampling package for probabilistic inference in Jax"
 	},
-	"github/deweylab/RSEM": {
-	"id": "github/deweylab/RSEM",
-	"title": "github/deweylab/RSEM",
-	"url": " https://rseng.github.io/software/repository/github/deweylab/RSEM",
-	"content": "RSEM: accurate quantification of gene and isoform expression from RNA-Seq data"
+	"github/Valdes-Tresanco-MS/NbThermo": {
+	"id": "github/Valdes-Tresanco-MS/NbThermo",
+	"title": "github/Valdes-Tresanco-MS/NbThermo",
+	"url": " https://rseng.github.io/software/repository/github/Valdes-Tresanco-MS/NbThermo",
+	"content": "NbThermo is a database of nanobodies melting temperature"
 	},
-	"github/justinmathias/isocalcR": {
-	"id": "github/justinmathias/isocalcR",
-	"title": "github/justinmathias/isocalcR",
-	"url": " https://rseng.github.io/software/repository/github/justinmathias/isocalcR",
-	"content": "R Package containing widely used isotope theory functions"
+	"github/ParkerLab/ataqv": {
+	"id": "github/ParkerLab/ataqv",
+	"title": "github/ParkerLab/ataqv",
+	"url": " https://rseng.github.io/software/repository/github/ParkerLab/ataqv",
+	"content": "A toolkit for QC and visualization of ATAC-seq results."
 	},
-	"github/JohannesBuchner/UltraNest": {
-	"id": "github/JohannesBuchner/UltraNest",
-	"title": "github/JohannesBuchner/UltraNest",
-	"url": " https://rseng.github.io/software/repository/github/JohannesBuchner/UltraNest",
-	"content": "Fit and compare complex models reliably and rapidly. Advanced nested sampling."
+	"github/MayaWaves/mayawaves": {
+	"id": "github/MayaWaves/mayawaves",
+	"title": "github/MayaWaves/mayawaves",
+	"url": " https://rseng.github.io/software/repository/github/MayaWaves/mayawaves",
+	"content": "None"
 	},
-	"github/JohannesBuchner/BXA": {
-	"id": "github/JohannesBuchner/BXA",
-	"title": "github/JohannesBuchner/BXA",
-	"url": " https://rseng.github.io/software/repository/github/JohannesBuchner/BXA",
-	"content": "Bayesian X-ray analysis (nested sampling for Xspec and Sherpa)"
+	"github/bcbio/bcbio-nextgen": {
+	"id": "github/bcbio/bcbio-nextgen",
+	"title": "github/bcbio/bcbio-nextgen",
+	"url": " https://rseng.github.io/software/repository/github/bcbio/bcbio-nextgen",
+	"content": "Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis"
 	},
-	"github/JohannesBuchner/nway": {
-	"id": "github/JohannesBuchner/nway",
-	"title": "github/JohannesBuchner/nway",
-	"url": " https://rseng.github.io/software/repository/github/JohannesBuchner/nway",
-	"content": "nway -- Bayesian cross-matching of astronomical catalogues"
+	"github/bcbio/bcbio.variation.recall": {
+	"id": "github/bcbio/bcbio.variation.recall",
+	"title": "github/bcbio/bcbio.variation.recall",
+	"url": " https://rseng.github.io/software/repository/github/bcbio/bcbio.variation.recall",
+	"content": "Parallel merging, squaring off and ensemble calling for genomic variants"
 	},
-	"github/JohannesBuchner/PyMultiNest": {
-	"id": "github/JohannesBuchner/PyMultiNest",
-	"title": "github/JohannesBuchner/PyMultiNest",
-	"url": " https://rseng.github.io/software/repository/github/JohannesBuchner/PyMultiNest",
-	"content": "Pythonic Bayesian inference and visualization for the MultiNest Nested Sampling Algorithm and PyCuba&#39;s cubature algorithms."
+	"github/chainsawriot/sweater": {
+	"id": "github/chainsawriot/sweater",
+	"title": "github/chainsawriot/sweater",
+	"url": " https://rseng.github.io/software/repository/github/chainsawriot/sweater",
+	"content": "👚 Speedy Word Embedding Association Test &amp; Extras using R"
 	},
-	"github/BRAIN-TO/GIRFReco.jl": {
-	"id": "github/BRAIN-TO/GIRFReco.jl",
-	"title": "github/BRAIN-TO/GIRFReco.jl",
-	"url": " https://rseng.github.io/software/repository/github/BRAIN-TO/GIRFReco.jl",
-	"content": "An Open-Source End-to-End Pipeline for Spiral Magnetic Resonance Image (MRI) Reconstruction in Julia"
+	"github/chainsawriot/oolong": {
+	"id": "github/chainsawriot/oolong",
+	"title": "github/chainsawriot/oolong",
+	"url": " https://rseng.github.io/software/repository/github/chainsawriot/oolong",
+	"content": "oolong 🍵 : create and administrate validation tests for typical automated content analysis tools."
 	},
-	"github/pysam-developers/pysam": {
-	"id": "github/pysam-developers/pysam",
-	"title": "github/pysam-developers/pysam",
-	"url": " https://rseng.github.io/software/repository/github/pysam-developers/pysam",
-	"content": "Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It&#39;s a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix."
+	"github/JuliaSmoothOptimizers/PDENLPModels.jl": {
+	"id": "github/JuliaSmoothOptimizers/PDENLPModels.jl",
+	"title": "github/JuliaSmoothOptimizers/PDENLPModels.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaSmoothOptimizers/PDENLPModels.jl",
+	"content": "A NLPModel API for optimization problems with PDE-constraints"
 	},
-	"github/iterize/tenta": {
-	"id": "github/iterize/tenta",
-	"title": "github/iterize/tenta",
-	"url": " https://rseng.github.io/software/repository/github/iterize/tenta",
-	"content": "Manage your sensors remotely and in real-time"
+	"github/JuliaSmoothOptimizers/DCISolver.jl": {
+	"id": "github/JuliaSmoothOptimizers/DCISolver.jl",
+	"title": "github/JuliaSmoothOptimizers/DCISolver.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaSmoothOptimizers/DCISolver.jl",
+	"content": "None"
 	},
-	"github/moscibrodzka/ipole": {
-	"id": "github/moscibrodzka/ipole",
-	"title": "github/moscibrodzka/ipole",
-	"url": " https://rseng.github.io/software/repository/github/moscibrodzka/ipole",
-	"content": "ipole (master, originally published), ipole-v2.0 (v2.0 is more compact with additional features). This is the original repository for the ipole code. "
+	"github/andreaminio/haplosync": {
+	"id": "github/andreaminio/haplosync",
+	"title": "github/andreaminio/haplosync",
+	"url": " https://rseng.github.io/software/repository/github/andreaminio/haplosync",
+	"content": "Tools for haplotype-wise reconstruction of pseudomolecules"
 	},
-	"github/palaimon/ipyannotator": {
-	"id": "github/palaimon/ipyannotator",
-	"title": "github/palaimon/ipyannotator",
-	"url": " https://rseng.github.io/software/repository/github/palaimon/ipyannotator",
-	"content": "the infinitely hackable annotation framework"
+	"github/FireflySpectra/firefly_release": {
+	"id": "github/FireflySpectra/firefly_release",
+	"title": "github/FireflySpectra/firefly_release",
+	"url": " https://rseng.github.io/software/repository/github/FireflySpectra/firefly_release",
+	"content": "Firefly, a full spectral fitting code. This repository contains the main code and examples on how to use it."
 	},
-	"github/RozanskiT/suppnet": {
-	"id": "github/RozanskiT/suppnet",
-	"title": "github/RozanskiT/suppnet",
-	"url": " https://rseng.github.io/software/repository/github/RozanskiT/suppnet",
-	"content": "SUPPNet: Neural network for stellar spectrum normalisation"
+	"github/gavinsimpson/gratia": {
+	"id": "github/gavinsimpson/gratia",
+	"title": "github/gavinsimpson/gratia",
+	"url": " https://rseng.github.io/software/repository/github/gavinsimpson/gratia",
+	"content": "ggplot-based graphics and useful functions for GAMs fitted using the mgcv package"
 	},
-	"github/bencebeky/spotrod": {
-	"id": "github/bencebeky/spotrod",
-	"title": "github/bencebeky/spotrod",
-	"url": " https://rseng.github.io/software/repository/github/bencebeky/spotrod",
-	"content": "A semi-analytic model for transits of spotted stars -- C implementation and Python API"
+	"github/dgarrimar/sqtlseeker2-nf": {
+	"id": "github/dgarrimar/sqtlseeker2-nf",
+	"title": "github/dgarrimar/sqtlseeker2-nf",
+	"url": " https://rseng.github.io/software/repository/github/dgarrimar/sqtlseeker2-nf",
+	"content": "An automated sQTL mapping pipeline using Nextflow"
 	},
-	"github/NOSALRO/robot_dart": {
-	"id": "github/NOSALRO/robot_dart",
-	"title": "github/NOSALRO/robot_dart",
-	"url": " https://rseng.github.io/software/repository/github/NOSALRO/robot_dart",
-	"content": "RobotDART: a versatile robot simulator for robotics and machine learning researchers"
+	"github/sblunt/orbitize": {
+	"id": "github/sblunt/orbitize",
+	"title": "github/sblunt/orbitize",
+	"url": " https://rseng.github.io/software/repository/github/sblunt/orbitize",
+	"content": "Orbit-fitting for directly imaged objects"
 	},
-	"github/bluenote-1577/sylph": {
-	"id": "github/bluenote-1577/sylph",
-	"title": "github/bluenote-1577/sylph",
-	"url": " https://rseng.github.io/software/repository/github/bluenote-1577/sylph",
-	"content": "ultrafast ANI querying and taxonomic profiling for metagenomic shotgun samples  by abundance-corrected minhash."
+	"github/nextstrain/augur": {
+	"id": "github/nextstrain/augur",
+	"title": "github/nextstrain/augur",
+	"url": " https://rseng.github.io/software/repository/github/nextstrain/augur",
+	"content": "Pipeline components for real-time phylodynamic analysis"
 	},
-	"github/rdpstaff/TaxonomyTree": {
-	"id": "github/rdpstaff/TaxonomyTree",
-	"title": "github/rdpstaff/TaxonomyTree",
-	"url": " https://rseng.github.io/software/repository/github/rdpstaff/TaxonomyTree",
-	"content": "TaxonomyTree building and traversal utility classes."
+	"github/nextstrain/nextclade": {
+	"id": "github/nextstrain/nextclade",
+	"title": "github/nextstrain/nextclade",
+	"url": " https://rseng.github.io/software/repository/github/nextstrain/nextclade",
+	"content": "Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement"
 	},
-	"github/rdpstaff/ReadSeq": {
-	"id": "github/rdpstaff/ReadSeq",
-	"title": "github/rdpstaff/ReadSeq",
-	"url": " https://rseng.github.io/software/repository/github/rdpstaff/ReadSeq",
-	"content": "Java based common sequence file format reader and sequence file manipulation.  Most RDP projects require this package."
+	"github/nextstrain/auspice": {
+	"id": "github/nextstrain/auspice",
+	"title": "github/nextstrain/auspice",
+	"url": " https://rseng.github.io/software/repository/github/nextstrain/auspice",
+	"content": "Web app for visualizing pathogen evolution"
 	},
-	"github/rdpstaff/AlignmentTools": {
-	"id": "github/rdpstaff/AlignmentTools",
-	"title": "github/rdpstaff/AlignmentTools",
-	"url": " https://rseng.github.io/software/repository/github/rdpstaff/AlignmentTools",
-	"content": "Tools for pairwise sequence comparison, distance calculation, and hidden markov model sequence scoring (using HMMER3 models).  Many RDP Projects require this package."
+	"github/rramadeu/AGHmatrix": {
+	"id": "github/rramadeu/AGHmatrix",
+	"title": "github/rramadeu/AGHmatrix",
+	"url": " https://rseng.github.io/software/repository/github/rramadeu/AGHmatrix",
+	"content": "An R package to compute relationship matrices for diploid and autopolyploid species"
 	},
-	"github/rdpstaff/classifier": {
-	"id": "github/rdpstaff/classifier",
-	"title": "github/rdpstaff/classifier",
-	"url": " https://rseng.github.io/software/repository/github/rdpstaff/classifier",
-	"content": "RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s"
+	"github/antoinediez/Sisyphe": {
+	"id": "github/antoinediez/Sisyphe",
+	"title": "github/antoinediez/Sisyphe",
+	"url": " https://rseng.github.io/software/repository/github/antoinediez/Sisyphe",
+	"content": "Simulation of Systems of interacting mean-field Particles with High Efficiency"
 	},
-	"github/nathanael-fijalkow/DeepSynth": {
-	"id": "github/nathanael-fijalkow/DeepSynth",
-	"title": "github/nathanael-fijalkow/DeepSynth",
-	"url": " https://rseng.github.io/software/repository/github/nathanael-fijalkow/DeepSynth",
-	"content": "General-purpose program synthesiser"
+	"github/Substra/substra": {
+	"id": "github/Substra/substra",
+	"title": "github/Substra/substra",
+	"url": " https://rseng.github.io/software/repository/github/Substra/substra",
+	"content": "Low-level Python library used to interact with a Substra network"
+	},
+	"github/difuture-lmu/dsBinVal": {
+	"id": "github/difuture-lmu/dsBinVal",
+	"title": "github/difuture-lmu/dsBinVal",
+	"url": " https://rseng.github.io/software/repository/github/difuture-lmu/dsBinVal",
+	"content": "ROC-GLM and calibration analysis for DataSHIELD"
 	},
-	"github/matthiasdemuzere/w2w": {
-	"id": "github/matthiasdemuzere/w2w",
-	"title": "github/matthiasdemuzere/w2w",
-	"url": " https://rseng.github.io/software/repository/github/matthiasdemuzere/w2w",
-	"content": "A python tool that ingests WUDAPT information into WRF."
+	"github/ComtekAdvancedStructures/cmstatr": {
+	"id": "github/ComtekAdvancedStructures/cmstatr",
+	"title": "github/ComtekAdvancedStructures/cmstatr",
+	"url": " https://rseng.github.io/software/repository/github/ComtekAdvancedStructures/cmstatr",
+	"content": "An R Package for Statistical Analysis of Composite Material Data"
 	},
-	"github/abhisrkckl/GWecc": {
-	"id": "github/abhisrkckl/GWecc",
-	"title": "github/abhisrkckl/GWecc",
-	"url": " https://rseng.github.io/software/repository/github/abhisrkckl/GWecc",
-	"content": "GWecc is a C++ code that computes the pulsar timing array (PTA) signals induced by eccentric supermassive binaries."
+	"github/chrishales/pieflag": {
+	"id": "github/chrishales/pieflag",
+	"title": "github/chrishales/pieflag",
+	"url": " https://rseng.github.io/software/repository/github/chrishales/pieflag",
+	"content": "CASA task to flag bad data by drawing upon statistics from reference channels in bandpass-calibrated data"
 	},
-	"github/jasonyangshadow/lpmx": {
-	"id": "github/jasonyangshadow/lpmx",
-	"title": "github/jasonyangshadow/lpmx",
-	"url": " https://rseng.github.io/software/repository/github/jasonyangshadow/lpmx",
-	"content": "A novel composable rootless container system"
+	"github/csbioinfopk/iSumoK-PseAAC": {
+	"id": "github/csbioinfopk/iSumoK-PseAAC",
+	"title": "github/csbioinfopk/iSumoK-PseAAC",
+	"url": " https://rseng.github.io/software/repository/github/csbioinfopk/iSumoK-PseAAC",
+	"content": "This is a GitHub repository page that is maintained by Bioinformatics Lab at the Department of Computer Science, University of Management and Technology, Lahore, Pakistan."
 	},
-	"github/C0PEP0D/otto": {
-	"id": "github/C0PEP0D/otto",
-	"title": "github/C0PEP0D/otto",
-	"url": " https://rseng.github.io/software/repository/github/C0PEP0D/otto",
-	"content": "a Python package to simulate, solve and visualize the source-tracking POMDP"
+	"github/ci-for-science/self-hosted-runners": {
+	"id": "github/ci-for-science/self-hosted-runners",
+	"title": "github/ci-for-science/self-hosted-runners",
+	"url": " https://rseng.github.io/software/repository/github/ci-for-science/self-hosted-runners",
+	"content": "Recipe to install and configure a GitHub action runner using Ansible"
 	},
-	"github/bregaldo/pywst": {
-	"id": "github/bregaldo/pywst",
-	"title": "github/bregaldo/pywst",
-	"url": " https://rseng.github.io/software/repository/github/bregaldo/pywst",
-	"content": "Python package for WST and RWST analyses of astrophysical data."
+	"github/greendw/AntabGMVA": {
+	"id": "github/greendw/AntabGMVA",
+	"title": "github/greendw/AntabGMVA",
+	"url": " https://rseng.github.io/software/repository/github/greendw/AntabGMVA",
+	"content": "A Python tool for managing GMVA metadata"
 	},
-	"github/hyattpd/Prodigal": {
-	"id": "github/hyattpd/Prodigal",
-	"title": "github/hyattpd/Prodigal",
-	"url": " https://rseng.github.io/software/repository/github/hyattpd/Prodigal",
-	"content": "Prodigal Gene Prediction Software"
+	"github/damonge/CoLoRe": {
+	"id": "github/damonge/CoLoRe",
+	"title": "github/damonge/CoLoRe",
+	"url": " https://rseng.github.io/software/repository/github/damonge/CoLoRe",
+	"content": "CoLoRe - Cosmological Lofty Realizations"
 	},
-	"github/dmvandamt/beyonce": {
-	"id": "github/dmvandamt/beyonce",
-	"title": "github/dmvandamt/beyonce",
-	"url": " https://rseng.github.io/software/repository/github/dmvandamt/beyonce",
-	"content": "None"
+	"github/damonge/CUTE": {
+	"id": "github/damonge/CUTE",
+	"title": "github/damonge/CUTE",
+	"url": " https://rseng.github.io/software/repository/github/damonge/CUTE",
+	"content": "Correlation Utilities and Two-point Estimation"
 	},
-	"github/rbturnbull/ausdex": {
-	"id": "github/rbturnbull/ausdex",
-	"title": "github/rbturnbull/ausdex",
-	"url": " https://rseng.github.io/software/repository/github/rbturnbull/ausdex",
-	"content": "A Python package for adjusting Australian dollars for inflation"
+	"github/damonge/CRIME": {
+	"id": "github/damonge/CRIME",
+	"title": "github/damonge/CRIME",
+	"url": " https://rseng.github.io/software/repository/github/damonge/CRIME",
+	"content": "Cosmological Realizations for Intensity Mapping Experiments"
 	},
-	"github/jdhenshaw/acorns": {
-	"id": "github/jdhenshaw/acorns",
-	"title": "github/jdhenshaw/acorns",
-	"url": " https://rseng.github.io/software/repository/github/jdhenshaw/acorns",
-	"content": "Agglomerative Clustering for ORganising Nested Structures"
+	"github/damonge/schNell": {
+	"id": "github/damonge/schNell",
+	"title": "github/damonge/schNell",
+	"url": " https://rseng.github.io/software/repository/github/damonge/schNell",
+	"content": "Fast calculation of N_ell for GW anisotropies"
 	},
-	"github/jdhenshaw/scousepy": {
-	"id": "github/jdhenshaw/scousepy",
-	"title": "github/jdhenshaw/scousepy",
-	"url": " https://rseng.github.io/software/repository/github/jdhenshaw/scousepy",
-	"content": "ScousePy"
+	"github/Kambrian/HBTplus": {
+	"id": "github/Kambrian/HBTplus",
+	"title": "github/Kambrian/HBTplus",
+	"url": " https://rseng.github.io/software/repository/github/Kambrian/HBTplus",
+	"content": "HBT+ subhalo finder and merger tree builder, the tool to get you out of mess and back to physics."
 	},
-	"github/jdhenshaw/SCOUSE": {
-	"id": "github/jdhenshaw/SCOUSE",
-	"title": "github/jdhenshaw/SCOUSE",
-	"url": " https://rseng.github.io/software/repository/github/jdhenshaw/SCOUSE",
-	"content": "Semi-automated multi-COmponent Universal Spectral-line fitting Engine"
+	"github/ICAMS/strucscan": {
+	"id": "github/ICAMS/strucscan",
+	"title": "github/ICAMS/strucscan",
+	"url": " https://rseng.github.io/software/repository/github/ICAMS/strucscan",
+	"content": "A lightweight python-based framework for high-throughput material simulation"
 	},
-	"github/wangchao-malab/DeepAc4C": {
-	"id": "github/wangchao-malab/DeepAc4C",
-	"title": "github/wangchao-malab/DeepAc4C",
-	"url": " https://rseng.github.io/software/repository/github/wangchao-malab/DeepAc4C",
+	"github/tanhevg/GpABC.jl": {
+	"id": "github/tanhevg/GpABC.jl",
+	"title": "github/tanhevg/GpABC.jl",
+	"url": " https://rseng.github.io/software/repository/github/tanhevg/GpABC.jl",
 	"content": "None"
 	},
-	"github/fstrozzi/Fastool": {
-	"id": "github/fstrozzi/Fastool",
-	"title": "github/fstrozzi/Fastool",
-	"url": " https://rseng.github.io/software/repository/github/fstrozzi/Fastool",
-	"content": "Simple and quick FastQ and FastA tool for file reading and conversion"
+	"github/sb-ncbr/golem": {
+	"id": "github/sb-ncbr/golem",
+	"title": "github/sb-ncbr/golem",
+	"url": " https://rseng.github.io/software/repository/github/sb-ncbr/golem",
+	"content": "GOLEM: distribution of Gene regulatOry eLEMents within the plant promoters"
 	},
-	"github/msyazwanfaid/hilalpy": {
-	"id": "github/msyazwanfaid/hilalpy",
-	"title": "github/msyazwanfaid/hilalpy",
-	"url": " https://rseng.github.io/software/repository/github/msyazwanfaid/hilalpy",
-	"content": "A package to analyse the data of Moon sighting for lunar crescent visibility criterion"
+	"github/eliotayache/GAMMA": {
+	"id": "github/eliotayache/GAMMA",
+	"title": "github/eliotayache/GAMMA",
+	"url": " https://rseng.github.io/software/repository/github/eliotayache/GAMMA",
+	"content": "Relativistic hydro and local cooling on a moving mesh"
 	},
-	"github/msyazwanfaid/Authentication-Algorithm-for-New-Moon-Visibility-Report": {
-	"id": "github/msyazwanfaid/Authentication-Algorithm-for-New-Moon-Visibility-Report",
-	"title": "github/msyazwanfaid/Authentication-Algorithm-for-New-Moon-Visibility-Report",
-	"url": " https://rseng.github.io/software/repository/github/msyazwanfaid/Authentication-Algorithm-for-New-Moon-Visibility-Report",
-	"content": "Authentication Algorithm for New Moon Visibility Report"
+	"github/askap-craco/CELEBI": {
+	"id": "github/askap-craco/CELEBI",
+	"title": "github/askap-craco/CELEBI",
+	"url": " https://rseng.github.io/software/repository/github/askap-craco/CELEBI",
+	"content": "The CRAFT Effortless Localisation and Enhanced Burst Inspection Pipeline"
 	},
-	"github/cns-iu/HRA-supporting-information": {
-	"id": "github/cns-iu/HRA-supporting-information",
-	"title": "github/cns-iu/HRA-supporting-information",
-	"url": " https://rseng.github.io/software/repository/github/cns-iu/HRA-supporting-information",
-	"content": "None"
+	"github/rvaser/rampler": {
+	"id": "github/rvaser/rampler",
+	"title": "github/rvaser/rampler",
+	"url": " https://rseng.github.io/software/repository/github/rvaser/rampler",
+	"content": "module for sampling genomic sequences"
 	},
-	"github/econ-ark/HARK": {
-	"id": "github/econ-ark/HARK",
-	"title": "github/econ-ark/HARK",
-	"url": " https://rseng.github.io/software/repository/github/econ-ark/HARK",
-	"content": "Heterogenous Agents Resources &amp; toolKit"
+	"github/rvaser/thread_pool": {
+	"id": "github/rvaser/thread_pool",
+	"title": "github/rvaser/thread_pool",
+	"url": " https://rseng.github.io/software/repository/github/rvaser/thread_pool",
+	"content": "C++ thread pool library"
 	},
-	"github/s-goldman/Dusty-Evolved-Star-Kit": {
-	"id": "github/s-goldman/Dusty-Evolved-Star-Kit",
-	"title": "github/s-goldman/Dusty-Evolved-Star-Kit",
-	"url": " https://rseng.github.io/software/repository/github/s-goldman/Dusty-Evolved-Star-Kit",
-	"content": "SED-fitting python package for fitting evolved stars"
+	"github/rvaser/sword": {
+	"id": "github/rvaser/sword",
+	"title": "github/rvaser/sword",
+	"url": " https://rseng.github.io/software/repository/github/rvaser/sword",
+	"content": "SWORD - a highly efficient protein database search"
 	},
-	"github/hpc-maths/samurai": {
-	"id": "github/hpc-maths/samurai",
-	"title": "github/hpc-maths/samurai",
-	"url": " https://rseng.github.io/software/repository/github/hpc-maths/samurai",
-	"content": "Intervals coupled with algebra of set to handle adaptive mesh refinement and operators on it."
+	"github/rvaser/spoa": {
+	"id": "github/rvaser/spoa",
+	"title": "github/rvaser/spoa",
+	"url": " https://rseng.github.io/software/repository/github/rvaser/spoa",
+	"content": "SIMD partial order alignment tool/library"
 	},
-	"github/slimgroup/InvertibleNetworks.jl": {
-	"id": "github/slimgroup/InvertibleNetworks.jl",
-	"title": "github/slimgroup/InvertibleNetworks.jl",
-	"url": " https://rseng.github.io/software/repository/github/slimgroup/InvertibleNetworks.jl",
-	"content": "A Julia framework for invertible neural networks"
+	"github/rvaser/bioparser": {
+	"id": "github/rvaser/bioparser",
+	"title": "github/rvaser/bioparser",
+	"url": " https://rseng.github.io/software/repository/github/rvaser/bioparser",
+	"content": "C++ library for parsing several formats in bioinformatics"
 	},
-	"github/zpenoyre/OoT": {
-	"id": "github/zpenoyre/OoT",
-	"title": "github/zpenoyre/OoT",
-	"url": " https://rseng.github.io/software/repository/github/zpenoyre/OoT",
-	"content": "Out-of-Transit Light Curve Generator"
+	"github/xenon-middleware/xenon": {
+	"id": "github/xenon-middleware/xenon",
+	"title": "github/xenon-middleware/xenon",
+	"url": " https://rseng.github.io/software/repository/github/xenon-middleware/xenon",
+	"content": "A middleware abstraction library that provides a simple programming interface to various compute and storage resources."
 	},
-	"github/zpenoyre/CausticFrog": {
-	"id": "github/zpenoyre/CausticFrog",
-	"title": "github/zpenoyre/CausticFrog",
-	"url": " https://rseng.github.io/software/repository/github/zpenoyre/CausticFrog",
-	"content": "1D Lagrangian Simulation Package"
+	"github/xenon-middleware/pyxenon": {
+	"id": "github/xenon-middleware/pyxenon",
+	"title": "github/xenon-middleware/pyxenon",
+	"url": " https://rseng.github.io/software/repository/github/xenon-middleware/pyxenon",
+	"content": "Python bindings for the Xenon API"
 	},
-	"github/wokast/PyCactus": {
-	"id": "github/wokast/PyCactus",
-	"title": "github/wokast/PyCactus",
-	"url": " https://rseng.github.io/software/repository/github/wokast/PyCactus",
-	"content": "Python packages for post-processing Cactus computational toolkit simulation data"
+	"github/Theano/Theano": {
+	"id": "github/Theano/Theano",
+	"title": "github/Theano/Theano",
+	"url": " https://rseng.github.io/software/repository/github/Theano/Theano",
+	"content": "Theano is a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently. It can use GPUs and perform efficient symbolic differentiation."
 	},
-	"github/wokast/RePrimAnd": {
-	"id": "github/wokast/RePrimAnd",
-	"title": "github/wokast/RePrimAnd",
-	"url": " https://rseng.github.io/software/repository/github/wokast/RePrimAnd",
-	"content": "Support library providing EOS and primitive recovery framework for general relativistic ideal MHD"
+	"github/galkintool/galkin": {
+	"id": "github/galkintool/galkin",
+	"title": "github/galkintool/galkin",
+	"url": " https://rseng.github.io/software/repository/github/galkintool/galkin",
+	"content": "None"
 	},
-	"github/atomec-project/atoMEC": {
-	"id": "github/atomec-project/atoMEC",
-	"title": "github/atomec-project/atoMEC",
-	"url": " https://rseng.github.io/software/repository/github/atomec-project/atoMEC",
-	"content": "Python-based average-atom code for simulations of high energy density phenomena such as in warm dense matter."
+	"github/gwpy/gwpy": {
+	"id": "github/gwpy/gwpy",
+	"title": "github/gwpy/gwpy",
+	"url": " https://rseng.github.io/software/repository/github/gwpy/gwpy",
+	"content": "Package for analysing and characterising gravitational wave data in python"
 	},
-	"github/octopus-sensing/octopus-sensing": {
-	"id": "github/octopus-sensing/octopus-sensing",
-	"title": "github/octopus-sensing/octopus-sensing",
-	"url": " https://rseng.github.io/software/repository/github/octopus-sensing/octopus-sensing",
+	"github/nye17/javelin": {
+	"id": "github/nye17/javelin",
+	"title": "github/nye17/javelin",
+	"url": " https://rseng.github.io/software/repository/github/nye17/javelin",
+	"content": "JAVELIN is now working under Python 3!"
+	},
+	"github/quantling/pyndl": {
+	"id": "github/quantling/pyndl",
+	"title": "github/quantling/pyndl",
+	"url": " https://rseng.github.io/software/repository/github/quantling/pyndl",
+	"content": "pyndl implements a Naive discriminative learning which is a learning and classification models based on the Rescorla-Wagner equations in python3."
+	},
+	"github/he2016012996/CABnet": {
+	"id": "github/he2016012996/CABnet",
+	"title": "github/he2016012996/CABnet",
+	"url": " https://rseng.github.io/software/repository/github/he2016012996/CABnet",
 	"content": "None"
 	},
-	"github/jeschaef/Graph4Med": {
-	"id": "github/jeschaef/Graph4Med",
-	"title": "github/jeschaef/Graph4Med",
-	"url": " https://rseng.github.io/software/repository/github/jeschaef/Graph4Med",
+	"github/hnikaein/stark": {
+	"id": "github/hnikaein/stark",
+	"title": "github/hnikaein/stark",
+	"url": " https://rseng.github.io/software/repository/github/hnikaein/stark",
+	"content": "A tool for bluntifying a bidirected de bruijn graph by removing overlaps."
+	},
+	"github/pymedphys/pymedphys": {
+	"id": "github/pymedphys/pymedphys",
+	"title": "github/pymedphys/pymedphys",
+	"url": " https://rseng.github.io/software/repository/github/pymedphys/pymedphys",
+	"content": "A community effort to develop an open standard library for Medical Physics in Python. Building quality transparent software together via peer review and open source distribution. Open code is better science."
+	},
+	"github/pkugyf/MST": {
+	"id": "github/pkugyf/MST",
+	"title": "github/pkugyf/MST",
+	"url": " https://rseng.github.io/software/repository/github/pkugyf/MST",
 	"content": "None"
 	},
-	"github/SchedMD/slurm": {
-	"id": "github/SchedMD/slurm",
-	"title": "github/SchedMD/slurm",
-	"url": " https://rseng.github.io/software/repository/github/SchedMD/slurm",
-	"content": "Slurm: A Highly Scalable Workload Manager"
+	"github/djones1040/PythonPhot": {
+	"id": "github/djones1040/PythonPhot",
+	"title": "github/djones1040/PythonPhot",
+	"url": " https://rseng.github.io/software/repository/github/djones1040/PythonPhot",
+	"content": "Simple DAOPHOT-type photometry in Python translated from IDL AstroLib photometry algorithms.  Please email me with bugs, suggestions, omissions, etc.  The code is citable as part of the Astrophysics Source Code Library (http://ascl.net/1501.010)."
 	},
-	"github/daehwankimlab/hisat2": {
-	"id": "github/daehwankimlab/hisat2",
-	"title": "github/daehwankimlab/hisat2",
-	"url": " https://rseng.github.io/software/repository/github/daehwankimlab/hisat2",
-	"content": "Graph-based alignment (Hierarchical Graph FM index)"
+	"github/koide3/small_gicp": {
+	"id": "github/koide3/small_gicp",
+	"title": "github/koide3/small_gicp",
+	"url": " https://rseng.github.io/software/repository/github/koide3/small_gicp",
+	"content": "Efficient and parallel algorithms for point cloud registration [C++, Python]"
 	},
-	"github/weecology/retriever": {
-	"id": "github/weecology/retriever",
-	"title": "github/weecology/retriever",
-	"url": " https://rseng.github.io/software/repository/github/weecology/retriever",
-	"content": "Quickly download, clean up, and install public datasets into a database management system"
+	"github/p-slash/qsonic": {
+	"id": "github/p-slash/qsonic",
+	"title": "github/p-slash/qsonic",
+	"url": " https://rseng.github.io/software/repository/github/p-slash/qsonic",
+	"content": "Continuum fitting for DESI"
 	},
-	"github/trinityrnaseq/wiki": {
-	"id": "github/trinityrnaseq/wiki",
-	"title": "github/trinityrnaseq/wiki",
-	"url": " https://rseng.github.io/software/repository/github/trinityrnaseq/wiki",
-	"content": "a software package comprised of three independent software modules (Inchworm, Chrysalis, and Butterfly) for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data."
+	"github/paulsengroup/StripePy": {
+	"id": "github/paulsengroup/StripePy",
+	"title": "github/paulsengroup/StripePy",
+	"url": " https://rseng.github.io/software/repository/github/paulsengroup/StripePy",
+	"content": "StripePy recognizes architectural stripes in 3C and Hi-C contact maps using geometric reasoning"
 	},
-	"github/DirectDM/directdm-mma": {
-	"id": "github/DirectDM/directdm-mma",
-	"title": "github/DirectDM/directdm-mma",
-	"url": " https://rseng.github.io/software/repository/github/DirectDM/directdm-mma",
-	"content": "DirectDM Mathematica package"
+	"github/paulsengroup/hictkpy": {
+	"id": "github/paulsengroup/hictkpy",
+	"title": "github/paulsengroup/hictkpy",
+	"url": " https://rseng.github.io/software/repository/github/paulsengroup/hictkpy",
+	"content": "Python bindings for hictk: read and write .cool and .hic files directly from Python"
 	},
-	"github/DirectDM/directdm-py": {
-	"id": "github/DirectDM/directdm-py",
-	"title": "github/DirectDM/directdm-py",
-	"url": " https://rseng.github.io/software/repository/github/DirectDM/directdm-py",
-	"content": "Python version of the DirectDM package"
+	"github/paulsengroup/hictkR": {
+	"id": "github/paulsengroup/hictkR",
+	"title": "github/paulsengroup/hictkR",
+	"url": " https://rseng.github.io/software/repository/github/paulsengroup/hictkR",
+	"content": "R bindings for hictk: read .cool and .hic files directly from R"
 	},
-	"github/dicompyler/dicompyler-core": {
-	"id": "github/dicompyler/dicompyler-core",
-	"title": "github/dicompyler/dicompyler-core",
-	"url": " https://rseng.github.io/software/repository/github/dicompyler/dicompyler-core",
-	"content": "A library of core radiation therapy modules for DICOM RT used by dicompyler"
+	"github/paulsengroup/hictk": {
+	"id": "github/paulsengroup/hictk",
+	"title": "github/paulsengroup/hictk",
+	"url": " https://rseng.github.io/software/repository/github/paulsengroup/hictk",
+	"content": "Blazing fast toolkit to work with .hic and .cool files"
 	},
-	"github/caimeng2/seesus": {
-	"id": "github/caimeng2/seesus",
-	"title": "github/caimeng2/seesus",
-	"url": " https://rseng.github.io/software/repository/github/caimeng2/seesus",
-	"content": "A Python package that identifies 17 Sustainable Development Goals and their 169 Targets in text, and classifies into social, environmental, and economic sustainability."
+	"github/danielreardon/scintools": {
+	"id": "github/danielreardon/scintools",
+	"title": "github/danielreardon/scintools",
+	"url": " https://rseng.github.io/software/repository/github/danielreardon/scintools",
+	"content": "Tools for analysing of pulsar scintillations "
 	},
-	"github/adithirgis/pollucheck": {
-	"id": "github/adithirgis/pollucheck",
-	"title": "github/adithirgis/pollucheck",
-	"url": " https://rseng.github.io/software/repository/github/adithirgis/pollucheck",
-	"content": "This application helps exploring the open source air quality data."
+	"github/konkolyseismolab/seismolab": {
+	"id": "github/konkolyseismolab/seismolab",
+	"title": "github/konkolyseismolab/seismolab",
+	"url": " https://rseng.github.io/software/repository/github/konkolyseismolab/seismolab",
+	"content": "Open-source python framework for downloading, analyzing, and visualizing data of variable stars from space-based surveys."
 	},
-	"github/phenomecentre/nPYc-Toolbox": {
-	"id": "github/phenomecentre/nPYc-Toolbox",
-	"title": "github/phenomecentre/nPYc-Toolbox",
-	"url": " https://rseng.github.io/software/repository/github/phenomecentre/nPYc-Toolbox",
-	"content": "The nPYc-Toolbox defines objects for representing, and implements functions to manipulate and display, metabolic profiling datasets."
+	"github/jrenaud90/TidalPy": {
+	"id": "github/jrenaud90/TidalPy",
+	"title": "github/jrenaud90/TidalPy",
+	"url": " https://rseng.github.io/software/repository/github/jrenaud90/TidalPy",
+	"content": "Software suite to perform solid-body tidal dissipation calculations for rocky and icy worlds"
 	},
-	"github/ComparativeGenomicsToolkit/cactus": {
-	"id": "github/ComparativeGenomicsToolkit/cactus",
-	"title": "github/ComparativeGenomicsToolkit/cactus",
-	"url": " https://rseng.github.io/software/repository/github/ComparativeGenomicsToolkit/cactus",
-	"content": "Official home of genome aligner based upon notion of Cactus graphs"
+	"github/antoinemarchal/ROHSA": {
+	"id": "github/antoinemarchal/ROHSA",
+	"title": "github/antoinemarchal/ROHSA",
+	"url": " https://rseng.github.io/software/repository/github/antoinemarchal/ROHSA",
+	"content": "Regularized Optimization for Hyper-Spectral Analysis"
 	},
-	"github/cameronliang/BayesVP": {
-	"id": "github/cameronliang/BayesVP",
-	"title": "github/cameronliang/BayesVP",
-	"url": " https://rseng.github.io/software/repository/github/cameronliang/BayesVP",
-	"content": "None"
+	"github/HadrienG/InSilicoSeq": {
+	"id": "github/HadrienG/InSilicoSeq",
+	"title": "github/HadrienG/InSilicoSeq",
+	"url": " https://rseng.github.io/software/repository/github/HadrienG/InSilicoSeq",
+	"content": ":rocket: A sequencing simulator"
 	},
-	"github/Sydney-Informatics-Hub/geodata-harvester": {
-	"id": "github/Sydney-Informatics-Hub/geodata-harvester",
-	"title": "github/Sydney-Informatics-Hub/geodata-harvester",
-	"url": " https://rseng.github.io/software/repository/github/Sydney-Informatics-Hub/geodata-harvester",
-	"content": "Jumpstart your geospatial analysis with a ready-made set of spatial-temporal aligned raster maps and data frames"
+	"github/amkram/shusher": {
+	"id": "github/amkram/shusher",
+	"title": "github/amkram/shusher",
+	"url": " https://rseng.github.io/software/repository/github/amkram/shusher",
+	"content": "Private, browser-based placement of genome sequences on phylogenetic trees using UShER."
 	},
-	"github/Sydney-Informatics-Hub/OmixLitMiner": {
-	"id": "github/Sydney-Informatics-Hub/OmixLitMiner",
-	"title": "github/Sydney-Informatics-Hub/OmixLitMiner",
-	"url": " https://rseng.github.io/software/repository/github/Sydney-Informatics-Hub/OmixLitMiner",
-	"content": "A bioinformatics tool for prioritising biological leads from omics data using literature mining."
+	"github/rrwick/Filtlong": {
+	"id": "github/rrwick/Filtlong",
+	"title": "github/rrwick/Filtlong",
+	"url": " https://rseng.github.io/software/repository/github/rrwick/Filtlong",
+	"content": "quality filtering tool for long reads"
 	},
-	"github/eldariont/svim": {
-	"id": "github/eldariont/svim",
-	"title": "github/eldariont/svim",
-	"url": " https://rseng.github.io/software/repository/github/eldariont/svim",
-	"content": "Structural Variant Identification Method using Long Reads"
+	"github/rrwick/Deepbinner": {
+	"id": "github/rrwick/Deepbinner",
+	"title": "github/rrwick/Deepbinner",
+	"url": " https://rseng.github.io/software/repository/github/rrwick/Deepbinner",
+	"content": "a signal-level demultiplexer for Oxford Nanopore reads"
 	},
-	"github/FINNGEN/lavaa-react": {
-	"id": "github/FINNGEN/lavaa-react",
-	"title": "github/FINNGEN/lavaa-react",
-	"url": " https://rseng.github.io/software/repository/github/FINNGEN/lavaa-react",
-	"content": "lavaa-react"
+	"github/rrwick/Porechop": {
+	"id": "github/rrwick/Porechop",
+	"title": "github/rrwick/Porechop",
+	"url": " https://rseng.github.io/software/repository/github/rrwick/Porechop",
+	"content": "adapter trimmer for Oxford Nanopore reads"
 	},
-	"github/dawolfgang/MRrelation": {
-	"id": "github/dawolfgang/MRrelation",
-	"title": "github/dawolfgang/MRrelation",
-	"url": " https://rseng.github.io/software/repository/github/dawolfgang/MRrelation",
-	"content": "None"
+	"github/rrwick/Unicycler": {
+	"id": "github/rrwick/Unicycler",
+	"title": "github/rrwick/Unicycler",
+	"url": " https://rseng.github.io/software/repository/github/rrwick/Unicycler",
+	"content": "hybrid assembly pipeline for bacterial genomes"
 	},
-	"github/c3s-magic/c3s-magic-wps": {
-	"id": "github/c3s-magic/c3s-magic-wps",
-	"title": "github/c3s-magic/c3s-magic-wps",
-	"url": " https://rseng.github.io/software/repository/github/c3s-magic/c3s-magic-wps",
-	"content": "None"
+	"github/rrwick/Bandage": {
+	"id": "github/rrwick/Bandage",
+	"title": "github/rrwick/Bandage",
+	"url": " https://rseng.github.io/software/repository/github/rrwick/Bandage",
+	"content": "a Bioinformatics Application for Navigating De novo Assembly Graphs Easily"
 	},
-	"github/vreverdy/magrathea-pathfinder": {
-	"id": "github/vreverdy/magrathea-pathfinder",
-	"title": "github/vreverdy/magrathea-pathfinder",
-	"url": " https://rseng.github.io/software/repository/github/vreverdy/magrathea-pathfinder",
-	"content": "A 3D AMR high-performance framework to propagate photons in cosmological simulations"
+	"github/openmopac/MOPAC": {
+	"id": "github/openmopac/MOPAC",
+	"title": "github/openmopac/MOPAC",
+	"url": " https://rseng.github.io/software/repository/github/openmopac/MOPAC",
+	"content": "Molecular Orbital PACkage"
 	},
-	"github/hasindu2008/slow5tools": {
-	"id": "github/hasindu2008/slow5tools",
-	"title": "github/hasindu2008/slow5tools",
-	"url": " https://rseng.github.io/software/repository/github/hasindu2008/slow5tools",
-	"content": "Slow5tools is a toolkit for converting (FAST5 &lt;-&gt; SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format."
+	"github/icrar/daliuge": {
+	"id": "github/icrar/daliuge",
+	"title": "github/icrar/daliuge",
+	"url": " https://rseng.github.io/software/repository/github/icrar/daliuge",
+	"content": "The DALiuGE Execution Engine"
 	},
-	"github/genostats/LowKi": {
-	"id": "github/genostats/LowKi",
-	"title": "github/genostats/LowKi",
-	"url": " https://rseng.github.io/software/repository/github/genostats/LowKi",
+	"github/jeschaef/Graph4Med": {
+	"id": "github/jeschaef/Graph4Med",
+	"title": "github/jeschaef/Graph4Med",
+	"url": " https://rseng.github.io/software/repository/github/jeschaef/Graph4Med",
 	"content": "None"
 	},
-	"github/noatgnu/catapult": {
-	"id": "github/noatgnu/catapult",
-	"title": "github/noatgnu/catapult",
-	"url": " https://rseng.github.io/software/repository/github/noatgnu/catapult",
-	"content": "automated mass spec data search and analysis tool"
-	},
-	"github/shaelebrown/TDApplied": {
-	"id": "github/shaelebrown/TDApplied",
-	"title": "github/shaelebrown/TDApplied",
-	"url": " https://rseng.github.io/software/repository/github/shaelebrown/TDApplied",
-	"content": "An R package for statistics and machine learning with persistence diagrams"
+	"github/cumbof/honto": {
+	"id": "github/cumbof/honto",
+	"title": "github/cumbof/honto",
+	"url": " https://rseng.github.io/software/repository/github/cumbof/honto",
+	"content": "A novel method for assessing and measuring homophily in networks"
 	},
-	"github/jhparkastro/gpcal": {
-	"id": "github/jhparkastro/gpcal",
-	"title": "github/jhparkastro/gpcal",
-	"url": " https://rseng.github.io/software/repository/github/jhparkastro/gpcal",
-	"content": "None"
+	"github/kowallus/mbgc": {
+	"id": "github/kowallus/mbgc",
+	"title": "github/kowallus/mbgc",
+	"url": " https://rseng.github.io/software/repository/github/kowallus/mbgc",
+	"content": "Multiple Bacteria Genome Compressor (MBGC)"
 	},
-	"github/mlares/hearsay": {
-	"id": "github/mlares/hearsay",
-	"title": "github/mlares/hearsay",
-	"url": " https://rseng.github.io/software/repository/github/mlares/hearsay",
-	"content": "Simulations for the probability of alien contact"
+	"github/sparks-baird/xtal2png": {
+	"id": "github/sparks-baird/xtal2png",
+	"title": "github/sparks-baird/xtal2png",
+	"url": " https://rseng.github.io/software/repository/github/sparks-baird/xtal2png",
+	"content": "Encode/decode a crystal structure to/from a grayscale PNG image for direct use with image-based machine learning models such as Palette."
 	},
-	"github/pnnl/interflow": {
-	"id": "github/pnnl/interflow",
-	"title": "github/pnnl/interflow",
-	"url": " https://rseng.github.io/software/repository/github/pnnl/interflow",
-	"content": "A Python package for organizing and calculating cross-sectoral interdependency flow values"
+	"github/arabic-digital-humanities/adhtools": {
+	"id": "github/arabic-digital-humanities/adhtools",
+	"title": "github/arabic-digital-humanities/adhtools",
+	"url": " https://rseng.github.io/software/repository/github/arabic-digital-humanities/adhtools",
+	"content": "Scripts for manipulating Arabic texts"
 	},
-	"github/pnnl/HyperNetX": {
-	"id": "github/pnnl/HyperNetX",
-	"title": "github/pnnl/HyperNetX",
-	"url": " https://rseng.github.io/software/repository/github/pnnl/HyperNetX",
-	"content": "Python package for hypergraph analysis and visualization."
+	"github/FitSNAP/FitSNAP": {
+	"id": "github/FitSNAP/FitSNAP",
+	"title": "github/FitSNAP/FitSNAP",
+	"url": " https://rseng.github.io/software/repository/github/FitSNAP/FitSNAP",
+	"content": "Software for generating SNAP machine-learning interatomic potentials"
 	},
-	"github/Krona/wiki": {
-	"id": "github/Krona/wiki",
-	"title": "github/Krona/wiki",
-	"url": " https://rseng.github.io/software/repository/github/Krona/wiki",
-	"content": "is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files."
+	"github/arjunsavel/cortecs": {
+	"id": "github/arjunsavel/cortecs",
+	"title": "github/arjunsavel/cortecs",
+	"url": " https://rseng.github.io/software/repository/github/arjunsavel/cortecs",
+	"content": "Compressed representations of opacity for radiative transfer!"
 	},
-	"github/AP6YC/AdaptiveResonance.jl": {
-	"id": "github/AP6YC/AdaptiveResonance.jl",
-	"title": "github/AP6YC/AdaptiveResonance.jl",
-	"url": " https://rseng.github.io/software/repository/github/AP6YC/AdaptiveResonance.jl",
-	"content": "A Julia package for Adaptive Resonance Theory (ART) algorithms."
+	"github/arjunsavel/SImMER": {
+	"id": "github/arjunsavel/SImMER",
+	"title": "github/arjunsavel/SImMER",
+	"url": " https://rseng.github.io/software/repository/github/arjunsavel/SImMER",
+	"content": "An open-source &amp; modular reduction pipeline for astronomical images of point sources."
 	},
-	"github/AP6YC/ClusterValidityIndices.jl": {
-	"id": "github/AP6YC/ClusterValidityIndices.jl",
-	"title": "github/AP6YC/ClusterValidityIndices.jl",
-	"url": " https://rseng.github.io/software/repository/github/AP6YC/ClusterValidityIndices.jl",
-	"content": "A Julia package for Cluster Validity Indices (CVIs)."
+	"github/chasmani/piecewise-regression": {
+	"id": "github/chasmani/piecewise-regression",
+	"title": "github/chasmani/piecewise-regression",
+	"url": " https://rseng.github.io/software/repository/github/chasmani/piecewise-regression",
+	"content": "piecewise-regression (aka segmented regression) in python. For fitting straight line models to data with one or more breakpoints where the gradient changes. "
 	},
-	"github/rordenlab/dcm2niix": {
-	"id": "github/rordenlab/dcm2niix",
-	"title": "github/rordenlab/dcm2niix",
-	"url": " https://rseng.github.io/software/repository/github/rordenlab/dcm2niix",
-	"content": "is a designed to convert neuroimaging data from the DICOM format to the NIfTI format."
+	"github/michaelhb/superplot": {
+	"id": "github/michaelhb/superplot",
+	"title": "github/michaelhb/superplot",
+	"url": " https://rseng.github.io/software/repository/github/michaelhb/superplot",
+	"content": "GUI for making high-quality plots from data from MultiNest or BAYES-X"
 	},
-	"github/CederGroupHub/sparse-lm": {
-	"id": "github/CederGroupHub/sparse-lm",
-	"title": "github/CederGroupHub/sparse-lm",
-	"url": " https://rseng.github.io/software/repository/github/CederGroupHub/sparse-lm",
-	"content": "Sparse Linear Regression Models"
+	"github/akikuno/cstag": {
+	"id": "github/akikuno/cstag",
+	"title": "github/akikuno/cstag",
+	"url": " https://rseng.github.io/software/repository/github/akikuno/cstag",
+	"content": "Python module to manipulate and visualize minimap2&#39;s cs tag"
 	},
-	"github/CederGroupHub/smol": {
-	"id": "github/CederGroupHub/smol",
-	"title": "github/CederGroupHub/smol",
-	"url": " https://rseng.github.io/software/repository/github/CederGroupHub/smol",
-	"content": "Statistical Mechanics on Lattices"
+	"github/spinicist/riesling": {
+	"id": "github/spinicist/riesling",
+	"title": "github/spinicist/riesling",
+	"url": " https://rseng.github.io/software/repository/github/spinicist/riesling",
+	"content": "Radial Interstices Enable Speedy Low-Volume Imaging"
 	},
-	"github/LucaJRossi/NIGO": {
-	"id": "github/LucaJRossi/NIGO",
-	"title": "github/LucaJRossi/NIGO",
-	"url": " https://rseng.github.io/software/repository/github/LucaJRossi/NIGO",
-	"content": "NIGO: a Numerical Integrator of Galactic Orbits"
+	"github/fruzsinaagocs/oscode": {
+	"id": "github/fruzsinaagocs/oscode",
+	"title": "github/fruzsinaagocs/oscode",
+	"url": " https://rseng.github.io/software/repository/github/fruzsinaagocs/oscode",
+	"content": "Code for efficient solution of oscillatory ordinary differential equations"
 	},
-	"github/gogetdata/ggd-utils": {
-	"id": "github/gogetdata/ggd-utils",
-	"title": "github/gogetdata/ggd-utils",
-	"url": " https://rseng.github.io/software/repository/github/gogetdata/ggd-utils",
-	"content": "programs for use in ggd"
+	"github/mariakotouza/TRIP-Tool": {
+	"id": "github/mariakotouza/TRIP-Tool",
+	"title": "github/mariakotouza/TRIP-Tool",
+	"url": " https://rseng.github.io/software/repository/github/mariakotouza/TRIP-Tool",
+	"content": "Antigen receptor gene profiler: A software framework that provides analytics services on NGS Data"
 	},
-	"github/vatlab/sos-notebook": {
-	"id": "github/vatlab/sos-notebook",
-	"title": "github/vatlab/sos-notebook",
-	"url": " https://rseng.github.io/software/repository/github/vatlab/sos-notebook",
-	"content": "Multi-language Jupyter Notebook"
+	"github/lammps/lammps": {
+	"id": "github/lammps/lammps",
+	"title": "github/lammps/lammps",
+	"url": " https://rseng.github.io/software/repository/github/lammps/lammps",
+	"content": "Public development project of the LAMMPS MD software package  "
 	},
-	"github/DeltaRCM/pyDeltaRCM": {
-	"id": "github/DeltaRCM/pyDeltaRCM",
-	"title": "github/DeltaRCM/pyDeltaRCM",
-	"url": " https://rseng.github.io/software/repository/github/DeltaRCM/pyDeltaRCM",
-	"content": "Delta model with a reduced-complexity approach"
+	"github/mikessh/oncofuse": {
+	"id": "github/mikessh/oncofuse",
+	"title": "github/mikessh/oncofuse",
+	"url": " https://rseng.github.io/software/repository/github/mikessh/oncofuse",
+	"content": "Predicting oncogenic potential of gene fusions"
 	},
-	"github/astro-datalab/noaosourcecatalog": {
-	"id": "github/astro-datalab/noaosourcecatalog",
-	"title": "github/astro-datalab/noaosourcecatalog",
-	"url": " https://rseng.github.io/software/repository/github/astro-datalab/noaosourcecatalog",
-	"content": "Source catalog of all NOAO imaging data"
+	"github/mikessh/vdjtools": {
+	"id": "github/mikessh/vdjtools",
+	"title": "github/mikessh/vdjtools",
+	"url": " https://rseng.github.io/software/repository/github/mikessh/vdjtools",
+	"content": "Post-analysis of immune repertoire sequencing data"
 	},
-	"github/difuture-lmu/dsBinVal": {
-	"id": "github/difuture-lmu/dsBinVal",
-	"title": "github/difuture-lmu/dsBinVal",
-	"url": " https://rseng.github.io/software/repository/github/difuture-lmu/dsBinVal",
-	"content": "ROC-GLM and calibration analysis for DataSHIELD"
+	"github/BD2KGenomics/toil": {
+	"id": "github/BD2KGenomics/toil",
+	"title": "github/BD2KGenomics/toil",
+	"url": " https://rseng.github.io/software/repository/github/BD2KGenomics/toil",
+	"content": "A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python."
 	},
-	"github/DavidLapous/multipers": {
-	"id": "github/DavidLapous/multipers",
-	"title": "github/DavidLapous/multipers",
-	"url": " https://rseng.github.io/software/repository/github/DavidLapous/multipers",
-	"content": "[NeurIPS2023,ICML2024] Multiparameter Persistence for Machine Learning "
+	"github/aroffringa/aartfaac2ms": {
+	"id": "github/aroffringa/aartfaac2ms",
+	"title": "github/aroffringa/aartfaac2ms",
+	"url": " https://rseng.github.io/software/repository/github/aroffringa/aartfaac2ms",
+	"content": "Converts Aartfaac correlator files to measurement sets"
 	},
-	"github/FergusDonnan/PyROA": {
-	"id": "github/FergusDonnan/PyROA",
-	"title": "github/FergusDonnan/PyROA",
-	"url": " https://rseng.github.io/software/repository/github/FergusDonnan/PyROA",
-	"content": "None"
+	"github/SkywalkerLuke/TransHLA": {
+	"id": "github/SkywalkerLuke/TransHLA",
+	"title": "github/SkywalkerLuke/TransHLA",
+	"url": " https://rseng.github.io/software/repository/github/SkywalkerLuke/TransHLA",
+	"content": "TransHLA: A hybrid transformer model for peptide-HLA epitope detection."
 	},
-	"github/FergusDonnan/PAHDecomp": {
-	"id": "github/FergusDonnan/PAHDecomp",
-	"title": "github/FergusDonnan/PAHDecomp",
-	"url": " https://rseng.github.io/software/repository/github/FergusDonnan/PAHDecomp",
-	"content": "None"
+	"github/AlexMaraio/WeakLensingQML": {
+	"id": "github/AlexMaraio/WeakLensingQML",
+	"title": "github/AlexMaraio/WeakLensingQML",
+	"url": " https://rseng.github.io/software/repository/github/AlexMaraio/WeakLensingQML",
+	"content": "Code applying the Quadratic Maximum Likelihood estimator to Weak Lensing"
 	},
-	"github/FergusDonnan/Running-Optimal-Average": {
-	"id": "github/FergusDonnan/Running-Optimal-Average",
-	"title": "github/FergusDonnan/Running-Optimal-Average",
-	"url": " https://rseng.github.io/software/repository/github/FergusDonnan/Running-Optimal-Average",
+	"github/LalResearchGroup/CNV-clinviewer": {
+	"id": "github/LalResearchGroup/CNV-clinviewer",
+	"title": "github/LalResearchGroup/CNV-clinviewer",
+	"url": " https://rseng.github.io/software/repository/github/LalResearchGroup/CNV-clinviewer",
 	"content": "None"
 	},
-	"github/MedMaxLab/selfEEG": {
-	"id": "github/MedMaxLab/selfEEG",
-	"title": "github/MedMaxLab/selfEEG",
-	"url": " https://rseng.github.io/software/repository/github/MedMaxLab/selfEEG",
-	"content": "selfEEG: a Python library for Self-Supervised Learning on Electroencephalography (EEG) data"
+	"github/IBMTRostock/GIFT": {
+	"id": "github/IBMTRostock/GIFT",
+	"title": "github/IBMTRostock/GIFT",
+	"url": " https://rseng.github.io/software/repository/github/IBMTRostock/GIFT",
+	"content": "This work comes from the Institute for Biomedical Engineering (https://ibmt.med.uni-rostock.de/en/) at the University Medical Center Rostock"
 	},
-	"github/savila/halogen": {
-	"id": "github/savila/halogen",
-	"title": "github/savila/halogen",
-	"url": " https://rseng.github.io/software/repository/github/savila/halogen",
-	"content": "None"
+	"github/sonwell/biotools": {
+	"id": "github/sonwell/biotools",
+	"title": "github/sonwell/biotools",
+	"url": " https://rseng.github.io/software/repository/github/sonwell/biotools",
+	"content": "A bunch of bioinformatics tools."
 	},
-	"github/AndreNicolasChene/DRAGRACES": {
-	"id": "github/AndreNicolasChene/DRAGRACES",
-	"title": "github/AndreNicolasChene/DRAGRACES",
-	"url": " https://rseng.github.io/software/repository/github/AndreNicolasChene/DRAGRACES",
-	"content": "Reduction pipeline for GRACES spectra (Gemini spectrograph)"
+	"github/cwinpy/cwinpy": {
+	"id": "github/cwinpy/cwinpy",
+	"title": "github/cwinpy/cwinpy",
+	"url": " https://rseng.github.io/software/repository/github/cwinpy/cwinpy",
+	"content": "CW Inference in Python"
 	},
-	"github/haowenz/chromap": {
-	"id": "github/haowenz/chromap",
-	"title": "github/haowenz/chromap",
-	"url": " https://rseng.github.io/software/repository/github/haowenz/chromap",
-	"content": "is an ultrafast method for aligning and preprocessing high throughput chromatin profiles."
+	"github/JMLascar/SUSHI": {
+	"id": "github/JMLascar/SUSHI",
+	"title": "github/JMLascar/SUSHI",
+	"url": " https://rseng.github.io/software/repository/github/JMLascar/SUSHI",
+	"content": "None"
 	},
-	"github/RichardObi/medigan": {
-	"id": "github/RichardObi/medigan",
-	"title": "github/RichardObi/medigan",
-	"url": " https://rseng.github.io/software/repository/github/RichardObi/medigan",
-	"content": "medigan - A Python Library of Pretrained Generative Models for Medical Image Synthesis"
+	"github/deniswerth/cosmoflow": {
+	"id": "github/deniswerth/cosmoflow",
+	"title": "github/deniswerth/cosmoflow",
+	"url": " https://rseng.github.io/software/repository/github/deniswerth/cosmoflow",
+	"content": "The Cosmological Flow -- a systematic approach to primordial correlators"
 	},
-	"github/waynebhayes/SpArcFiRe": {
-	"id": "github/waynebhayes/SpArcFiRe",
-	"title": "github/waynebhayes/SpArcFiRe",
-	"url": " https://rseng.github.io/software/repository/github/waynebhayes/SpArcFiRe",
-	"content": "SPiral ARC FInder and REporter - find spiral arcs in galaxies.... or maybe hurricanes too?"
+	"github/kidusasfaw/spatPomp": {
+	"id": "github/kidusasfaw/spatPomp",
+	"title": "github/kidusasfaw/spatPomp",
+	"url": " https://rseng.github.io/software/repository/github/kidusasfaw/spatPomp",
+	"content": "R package for statistical inference of spatiotemporal partially observed Markov processes"
 	},
-	"github/RangamaniLabUCSD/smart": {
-	"id": "github/RangamaniLabUCSD/smart",
-	"title": "github/RangamaniLabUCSD/smart",
-	"url": " https://rseng.github.io/software/repository/github/RangamaniLabUCSD/smart",
-	"content": "None"
+	"github/gokalpcelik/ROHMMCLI": {
+	"id": "github/gokalpcelik/ROHMMCLI",
+	"title": "github/gokalpcelik/ROHMMCLI",
+	"url": " https://rseng.github.io/software/repository/github/gokalpcelik/ROHMMCLI",
+	"content": "ROHMMCLI - Flexible HMM based homozygosity predictor."
 	},
-	"github/ltlancas/walter": {
-	"id": "github/ltlancas/walter",
-	"title": "github/ltlancas/walter",
-	"url": " https://rseng.github.io/software/repository/github/ltlancas/walter",
-	"content": "A code to make predictions for the number of resolved stars in a given observation with the future Nancy Grace Roman Space Telescope (RST)"
+	"github/PolymerGuy/recolo": {
+	"id": "github/PolymerGuy/recolo",
+	"title": "github/PolymerGuy/recolo",
+	"url": " https://rseng.github.io/software/repository/github/PolymerGuy/recolo",
+	"content": "Load reconstuction using virtual fields"
 	},
-	"github/icredd-cheminfo/CGRdb2": {
-	"id": "github/icredd-cheminfo/CGRdb2",
-	"title": "github/icredd-cheminfo/CGRdb2",
-	"url": " https://rseng.github.io/software/repository/github/icredd-cheminfo/CGRdb2",
+	"github/shikhar249/OnionMHC": {
+	"id": "github/shikhar249/OnionMHC",
+	"title": "github/shikhar249/OnionMHC",
+	"url": " https://rseng.github.io/software/repository/github/shikhar249/OnionMHC",
 	"content": "None"
 	},
-	"github/DorianDepriester/mtex2Gmsh": {
-	"id": "github/DorianDepriester/mtex2Gmsh",
-	"title": "github/DorianDepriester/mtex2Gmsh",
-	"url": " https://rseng.github.io/software/repository/github/DorianDepriester/mtex2Gmsh",
-	"content": "Matlab toolbox for generating 2D meshes from EBSD data"
-	},
-	"github/rzellem/EXOTIC": {
-	"id": "github/rzellem/EXOTIC",
-	"title": "github/rzellem/EXOTIC",
-	"url": " https://rseng.github.io/software/repository/github/rzellem/EXOTIC",
-	"content": "EXOplanet Transit Interpretation Code"
+	"github/linneas/condetri": {
+	"id": "github/linneas/condetri",
+	"title": "github/linneas/condetri",
+	"url": " https://rseng.github.io/software/repository/github/linneas/condetri",
+	"content": "Automatically exported from code.google.com/p/condetri"
 	},
-	"github/E3SM-Project/gdess": {
-	"id": "github/E3SM-Project/gdess",
-	"title": "github/E3SM-Project/gdess",
-	"url": " https://rseng.github.io/software/repository/github/E3SM-Project/gdess",
-	"content": "Tool for evaluating atmospheric carbon dioxide concentrations as simulated by Earth system models"
+	"github/0xCoto/Virgo": {
+	"id": "github/0xCoto/Virgo",
+	"title": "github/0xCoto/Virgo",
+	"url": " https://rseng.github.io/software/repository/github/0xCoto/Virgo",
+	"content": "📡 Virgo: A Versatile Spectrometer for Radio Astronomy"
 	},
-	"github/glotzerlab/freud": {
-	"id": "github/glotzerlab/freud",
-	"title": "github/glotzerlab/freud",
-	"url": " https://rseng.github.io/software/repository/github/glotzerlab/freud",
-	"content": "Powerful, efficient particle trajectory analysis in scientific Python."
+	"github/RitchieLab/hudson": {
+	"id": "github/RitchieLab/hudson",
+	"title": "github/RitchieLab/hudson",
+	"url": " https://rseng.github.io/software/repository/github/RitchieLab/hudson",
+	"content": "An R package for creating mirrored Manhattan plots"
 	},
-	"github/glotzerlab/hoomd-blue": {
-	"id": "github/glotzerlab/hoomd-blue",
-	"title": "github/glotzerlab/hoomd-blue",
-	"url": " https://rseng.github.io/software/repository/github/glotzerlab/hoomd-blue",
-	"content": "Molecular dynamics and Monte Carlo soft matter simulation on GPUs."
+	"github/mongibellili/QuantizedSystemSolver.jl": {
+	"id": "github/mongibellili/QuantizedSystemSolver.jl",
+	"title": "github/mongibellili/QuantizedSystemSolver.jl",
+	"url": " https://rseng.github.io/software/repository/github/mongibellili/QuantizedSystemSolver.jl",
+	"content": "This is an ODE solver that implements the quantized state system methods: An approach that builds the solution by updating the system variables independently."
 	},
-	"github/glotzerlab/coxeter": {
-	"id": "github/glotzerlab/coxeter",
-	"title": "github/glotzerlab/coxeter",
-	"url": " https://rseng.github.io/software/repository/github/glotzerlab/coxeter",
-	"content": "Collection of tools to help initialize and manipulate shapes."
+	"github/harvard-nrg/dwiqc": {
+	"id": "github/harvard-nrg/dwiqc",
+	"title": "github/harvard-nrg/dwiqc",
+	"url": " https://rseng.github.io/software/repository/github/harvard-nrg/dwiqc",
+	"content": "DWI QC Pipeline"
 	},
-	"github/bigraph-toolkit-suite/bigraphs.grgen-bigraphs": {
-	"id": "github/bigraph-toolkit-suite/bigraphs.grgen-bigraphs",
-	"title": "github/bigraph-toolkit-suite/bigraphs.grgen-bigraphs",
-	"url": " https://rseng.github.io/software/repository/github/bigraph-toolkit-suite/bigraphs.grgen-bigraphs",
-	"content": "BiGGer is a transformation tool and library that translates bigraphical models and rules to GrGen.NET-compatible files. It enables bigraph rewriting using GrGen.NET."
+	"github/spacetelescope/stginga": {
+	"id": "github/spacetelescope/stginga",
+	"title": "github/spacetelescope/stginga",
+	"url": " https://rseng.github.io/software/repository/github/spacetelescope/stginga",
+	"content": "Ginga products specific to STScI data analysis."
 	},
-	"github/neuroanatomy/thresholdmann": {
-	"id": "github/neuroanatomy/thresholdmann",
-	"title": "github/neuroanatomy/thresholdmann",
-	"url": " https://rseng.github.io/software/repository/github/neuroanatomy/thresholdmann",
-	"content": "A tool to apply a smoothly varying threshold to a nifti image"
+	"github/spacetelescope/exovetter": {
+	"id": "github/spacetelescope/exovetter",
+	"title": "github/spacetelescope/exovetter",
+	"url": " https://rseng.github.io/software/repository/github/spacetelescope/exovetter",
+	"content": "Exoplanet vetting"
 	},
-	"github/neuroanatomy/reorient": {
-	"id": "github/neuroanatomy/reorient",
-	"title": "github/neuroanatomy/reorient",
-	"url": " https://rseng.github.io/software/repository/github/neuroanatomy/reorient",
-	"content": "A tool for reorienting and cropping MRI data"
+	"github/spacetelescope/stsynphot_refactor": {
+	"id": "github/spacetelescope/stsynphot_refactor",
+	"title": "github/spacetelescope/stsynphot_refactor",
+	"url": " https://rseng.github.io/software/repository/github/spacetelescope/stsynphot_refactor",
+	"content": "Synthetic photometry using Astropy for HST and JWST"
 	},
-	"github/healpy/healpy": {
-	"id": "github/healpy/healpy",
-	"title": "github/healpy/healpy",
-	"url": " https://rseng.github.io/software/repository/github/healpy/healpy",
-	"content": "Python healpix maps tools"
+	"github/spacetelescope/astronify": {
+	"id": "github/spacetelescope/astronify",
+	"title": "github/spacetelescope/astronify",
+	"url": " https://rseng.github.io/software/repository/github/spacetelescope/astronify",
+	"content": "Astronomical data sonification."
 	},
-	"github/DrDaveShaw/INCHEM-Py": {
-	"id": "github/DrDaveShaw/INCHEM-Py",
-	"title": "github/DrDaveShaw/INCHEM-Py",
-	"url": " https://rseng.github.io/software/repository/github/DrDaveShaw/INCHEM-Py",
-	"content": "The INdoor CHEMical model in Python (INCHEM-Py) is an open source and accessible box-model built to give researchers deeper insight into the chemical mechanisms behind indoor air chemistry."
+	"github/spacetelescope/synphot_refactor": {
+	"id": "github/spacetelescope/synphot_refactor",
+	"title": "github/spacetelescope/synphot_refactor",
+	"url": " https://rseng.github.io/software/repository/github/spacetelescope/synphot_refactor",
+	"content": "Synthetic photometry using Astropy"
 	},
-	"github/ZhangGroup-MITChemistry/OpenNucleome": {
-	"id": "github/ZhangGroup-MITChemistry/OpenNucleome",
-	"title": "github/ZhangGroup-MITChemistry/OpenNucleome",
-	"url": " https://rseng.github.io/software/repository/github/ZhangGroup-MITChemistry/OpenNucleome",
-	"content": "OpenNucleome is an open-source software designed for conducting molecular dynamics (MD) simulations of the human nucleus. This software streamlines the process of setting up whole nucleus simulations through just a few lines of Python scripting."
+	"github/spacetelescope/specviz": {
+	"id": "github/spacetelescope/specviz",
+	"title": "github/spacetelescope/specviz",
+	"url": " https://rseng.github.io/software/repository/github/spacetelescope/specviz",
+	"content": "An interactive astronomical 1D spectra analysis tool."
 	},
-	"github/climate-machine/Oceananigans.jl": {
-	"id": "github/climate-machine/Oceananigans.jl",
-	"title": "github/climate-machine/Oceananigans.jl",
-	"url": " https://rseng.github.io/software/repository/github/climate-machine/Oceananigans.jl",
-	"content": "🌊 Fast and friendly fluid dynamics on CPUs and GPUs"
+	"github/spacetelescope/imexam": {
+	"id": "github/spacetelescope/imexam",
+	"title": "github/spacetelescope/imexam",
+	"url": " https://rseng.github.io/software/repository/github/spacetelescope/imexam",
+	"content": "imexam is a python tool for simple image examination, and plotting, with similar functionality to IRAF&#39;s imexamine"
 	},
-	"github/uedaLabR/nanoDoc": {
-	"id": "github/uedaLabR/nanoDoc",
-	"title": "github/uedaLabR/nanoDoc",
-	"url": " https://rseng.github.io/software/repository/github/uedaLabR/nanoDoc",
-	"content": "RNA modification detection using Nanopore raw reads with Deep One Class classification"
+	"github/spacetelescope/jdaviz": {
+	"id": "github/spacetelescope/jdaviz",
+	"title": "github/spacetelescope/jdaviz",
+	"url": " https://rseng.github.io/software/repository/github/spacetelescope/jdaviz",
+	"content": "JWST astronomical data analysis tools in the Jupyter platform"
 	},
-	"github/sanger-pathogens/Artemis": {
-	"id": "github/sanger-pathogens/Artemis",
-	"title": "github/sanger-pathogens/Artemis",
-	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/Artemis",
-	"content": "Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation"
+	"github/spacetelescope/pystortion": {
+	"id": "github/spacetelescope/pystortion",
+	"title": "github/spacetelescope/pystortion",
+	"url": " https://rseng.github.io/software/repository/github/spacetelescope/pystortion",
+	"content": "None"
 	},
-	"github/sanger-pathogens/Bio-Tradis": {
-	"id": "github/sanger-pathogens/Bio-Tradis",
-	"title": "github/sanger-pathogens/Bio-Tradis",
-	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/Bio-Tradis",
-	"content": "A set of tools to analyse the output from TraDIS analyses"
+	"github/spacetelescope/hst_cosmic_rays": {
+	"id": "github/spacetelescope/hst_cosmic_rays",
+	"title": "github/spacetelescope/hst_cosmic_rays",
+	"url": " https://rseng.github.io/software/repository/github/spacetelescope/hst_cosmic_rays",
+	"content": "None"
 	},
-	"github/sanger-pathogens/ariba": {
-	"id": "github/sanger-pathogens/ariba",
-	"title": "github/sanger-pathogens/ariba",
-	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/ariba",
-	"content": "Antimicrobial Resistance Identification By Assembly"
+	"github/spacetelescope/mirage": {
+	"id": "github/spacetelescope/mirage",
+	"title": "github/spacetelescope/mirage",
+	"url": " https://rseng.github.io/software/repository/github/spacetelescope/mirage",
+	"content": "This code can be used to generate simulated NIRCam, NIRISS, or FGS data "
 	},
-	"github/sanger-pathogens/circlator": {
-	"id": "github/sanger-pathogens/circlator",
-	"title": "github/sanger-pathogens/circlator",
-	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/circlator",
-	"content": "Circlator is a tool to circularize genome assemblies. The input is a genome assembly in FASTA format and corrected PacBio or nanopore reads in FASTA or FASTQ format. Circlator will attempt to identify each circular sequence and output a linearised version of it. It does this by assembling all reads that map to contig ends and comparing the resulting contigs with the input assembly."
+	"github/spacetelescope/specview": {
+	"id": "github/spacetelescope/specview",
+	"title": "github/spacetelescope/specview",
+	"url": " https://rseng.github.io/software/repository/github/spacetelescope/specview",
+	"content": "Archived, see https://github.com/spacetelescope/specviz for future development. Spectrum visualization, manipulation,  and fitting"
 	},
-	"github/sanger-pathogens/assembly-stats": {
-	"id": "github/sanger-pathogens/assembly-stats",
-	"title": "github/sanger-pathogens/assembly-stats",
-	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/assembly-stats",
-	"content": "Get assembly statistics from FASTA and FASTQ files"
+	"github/spacetelescope/stsdas_stripped": {
+	"id": "github/spacetelescope/stsdas_stripped",
+	"title": "github/spacetelescope/stsdas_stripped",
+	"url": " https://rseng.github.io/software/repository/github/spacetelescope/stsdas_stripped",
+	"content": "STSDAS/TABLES (nonfunctional / for reference only)"
 	},
-	"github/sanger-pathogens/snp-sites": {
-	"id": "github/sanger-pathogens/snp-sites",
-	"title": "github/sanger-pathogens/snp-sites",
-	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/snp-sites",
-	"content": "Finds SNP sites from a multi-FASTA alignment file"
+	"github/low-sky/cprops": {
+	"id": "github/low-sky/cprops",
+	"title": "github/low-sky/cprops",
+	"url": " https://rseng.github.io/software/repository/github/low-sky/cprops",
+	"content": "Rosolowsky and Leroy (2006) Algorithm"
 	},
-	"github/sanger-pathogens/pymummer": {
-	"id": "github/sanger-pathogens/pymummer",
-	"title": "github/sanger-pathogens/pymummer",
-	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/pymummer",
-	"content": "Python3 module for running MUMmer and reading the output"
+	"github/extendr/extendr": {
+	"id": "github/extendr/extendr",
+	"title": "github/extendr/extendr",
+	"url": " https://rseng.github.io/software/repository/github/extendr/extendr",
+	"content": "R extension library for rust designed to be familiar to R users."
 	},
-	"github/sanger-pathogens/gubbins": {
-	"id": "github/sanger-pathogens/gubbins",
-	"title": "github/sanger-pathogens/gubbins",
-	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/gubbins",
-	"content": "Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins"
+	"github/PyFstat/PyFstat": {
+	"id": "github/PyFstat/PyFstat",
+	"title": "github/PyFstat/PyFstat",
+	"url": " https://rseng.github.io/software/repository/github/PyFstat/PyFstat",
+	"content": "a python package for gravitational wave analysis with the F-statistic"
 	},
-	"github/sanger-pathogens/Fastaq": {
-	"id": "github/sanger-pathogens/Fastaq",
-	"title": "github/sanger-pathogens/Fastaq",
-	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/Fastaq",
-	"content": "Python3 scripts to manipulate FASTA and FASTQ files"
+	"github/weiliu123/PCLassoReg": {
+	"id": "github/weiliu123/PCLassoReg",
+	"title": "github/weiliu123/PCLassoReg",
+	"url": " https://rseng.github.io/software/repository/github/weiliu123/PCLassoReg",
+	"content": "None"
 	},
-	"github/sanger-pathogens/Roary": {
-	"id": "github/sanger-pathogens/Roary",
-	"title": "github/sanger-pathogens/Roary",
-	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/Roary",
-	"content": "Rapid large-scale prokaryote pan genome analysis"
+	"github/aksholokhov/pysr3": {
+	"id": "github/aksholokhov/pysr3",
+	"title": "github/aksholokhov/pysr3",
+	"url": " https://rseng.github.io/software/repository/github/aksholokhov/pysr3",
+	"content": "SciKit-Learn compatible library for training mixed-effects models."
 	},
-	"github/sanger-pathogens/iva": {
-	"id": "github/sanger-pathogens/iva",
-	"title": "github/sanger-pathogens/iva",
-	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/iva",
-	"content": "de novo virus assembler of Illumina paired reads"
+	"github/laristra/flecsph": {
+	"id": "github/laristra/flecsph",
+	"title": "github/laristra/flecsph",
+	"url": " https://rseng.github.io/software/repository/github/laristra/flecsph",
+	"content": "A Parallel and Distributed SPH Implementation Based on the FleCSI"
 	},
-	"github/bancaditalia/black-it": {
-	"id": "github/bancaditalia/black-it",
-	"title": "github/bancaditalia/black-it",
-	"url": " https://rseng.github.io/software/repository/github/bancaditalia/black-it",
-	"content": "Black-box abm calibration kit by the Bank of Italy"
+	"github/bio-tools/biotoolsSum": {
+	"id": "github/bio-tools/biotoolsSum",
+	"title": "github/bio-tools/biotoolsSum",
+	"url": " https://rseng.github.io/software/repository/github/bio-tools/biotoolsSum",
+	"content": "bio.tools interface with report generation features"
 	},
-	"github/BobChallen/Basic-mzml-plotter": {
-	"id": "github/BobChallen/Basic-mzml-plotter",
-	"title": "github/BobChallen/Basic-mzml-plotter",
-	"url": " https://rseng.github.io/software/repository/github/BobChallen/Basic-mzml-plotter",
-	"content": "A very basic mzml file plotting program that can plot single scans, merge all scans from a file, plot the TIC, and plot an EIC of a chosen m/z value."
+	"github/dbosul/CWITools": {
+	"id": "github/dbosul/CWITools",
+	"title": "github/dbosul/CWITools",
+	"url": " https://rseng.github.io/software/repository/github/dbosul/CWITools",
+	"content": "Tools for Cosmic Web Imager Data"
 	},
-	"github/edwardoughton/itmlogic": {
-	"id": "github/edwardoughton/itmlogic",
-	"title": "github/edwardoughton/itmlogic",
-	"url": " https://rseng.github.io/software/repository/github/edwardoughton/itmlogic",
-	"content": "Longley-Rice Irregular Terrain Model (itmlogic)"
+	"github/bedops/bedops": {
+	"id": "github/bedops/bedops",
+	"title": "github/bedops/bedops",
+	"url": " https://rseng.github.io/software/repository/github/bedops/bedops",
+	"content": ":microscope: BEDOPS: high-performance genomic feature operations"
 	},
-	"github/nuc-astro/winnet": {
-	"id": "github/nuc-astro/winnet",
-	"title": "github/nuc-astro/winnet",
-	"url": " https://rseng.github.io/software/repository/github/nuc-astro/winnet",
-	"content": "The WinNet nuclear reaction network"
+	"github/V-Bernal/GeneNetTools": {
+	"id": "github/V-Bernal/GeneNetTools",
+	"title": "github/V-Bernal/GeneNetTools",
+	"url": " https://rseng.github.io/software/repository/github/V-Bernal/GeneNetTools",
+	"content": "R package for Gaussian graphical models with (Ledoit Wolf) shrinkage "
 	},
-	"github/COINtoolbox/ActSNClass": {
-	"id": "github/COINtoolbox/ActSNClass",
-	"title": "github/COINtoolbox/ActSNClass",
-	"url": " https://rseng.github.io/software/repository/github/COINtoolbox/ActSNClass",
-	"content": "Active Learning for SN photometric classification"
+	"github/YuSugihara/MutMap": {
+	"id": "github/YuSugihara/MutMap",
+	"title": "github/YuSugihara/MutMap",
+	"url": " https://rseng.github.io/software/repository/github/YuSugihara/MutMap",
+	"content": "MutMap pipeline to identify causative mutations responsible for a phenotype"
 	},
-	"github/COINtoolbox/DRACULA": {
-	"id": "github/COINtoolbox/DRACULA",
-	"title": "github/COINtoolbox/DRACULA",
-	"url": " https://rseng.github.io/software/repository/github/COINtoolbox/DRACULA",
-	"content": "None"
+	"github/loneknightpy/idba": {
+	"id": "github/loneknightpy/idba",
+	"title": "github/loneknightpy/idba",
+	"url": " https://rseng.github.io/software/repository/github/loneknightpy/idba",
+	"content": "iterative De Bruijn Graph short read assemblers"
 	},
-	"github/COINtoolbox/CosmoPhotoz": {
-	"id": "github/COINtoolbox/CosmoPhotoz",
-	"title": "github/COINtoolbox/CosmoPhotoz",
-	"url": " https://rseng.github.io/software/repository/github/COINtoolbox/CosmoPhotoz",
-	"content": "Photometric redshift estimator utilising Generalized Linear Models."
+	"github/NERC-CEH/RMAVIS": {
+	"id": "github/NERC-CEH/RMAVIS",
+	"title": "github/NERC-CEH/RMAVIS",
+	"url": " https://rseng.github.io/software/repository/github/NERC-CEH/RMAVIS",
+	"content": "A R Shiny application for the assignment of vegetation survey plot data to GB NVC communities with additional exploratory analyses."
 	},
-	"github/bfarr/kombine": {
-	"id": "github/bfarr/kombine",
-	"title": "github/bfarr/kombine",
-	"url": " https://rseng.github.io/software/repository/github/bfarr/kombine",
-	"content": "A kernel-density-based, embarrassingly parallel ensemble sampler"
+	"github/SciLifeLab/TIDDIT": {
+	"id": "github/SciLifeLab/TIDDIT",
+	"title": "github/SciLifeLab/TIDDIT",
+	"url": " https://rseng.github.io/software/repository/github/SciLifeLab/TIDDIT",
+	"content": "TIDDIT - structural variant calling"
 	},
-	"github/bfarr/exocartographer": {
-	"id": "github/bfarr/exocartographer",
-	"title": "github/bfarr/exocartographer",
-	"url": " https://rseng.github.io/software/repository/github/bfarr/exocartographer",
-	"content": "A forward-modeling tool for constraining surface maps orbital parameters of exoplanets from time-resolved photometry"
+	"github/ropenscilabs/gendercoder": {
+	"id": "github/ropenscilabs/gendercoder",
+	"title": "github/ropenscilabs/gendercoder",
+	"url": " https://rseng.github.io/software/repository/github/ropenscilabs/gendercoder",
+	"content": "Creating R package to code free text gender responses"
 	},
-	"github/m-dadej/MarSwitching.jl": {
-	"id": "github/m-dadej/MarSwitching.jl",
-	"title": "github/m-dadej/MarSwitching.jl",
-	"url": " https://rseng.github.io/software/repository/github/m-dadej/MarSwitching.jl",
-	"content": "MarSwitching.jl: Julia package for Markov switching dynamic models"
+	"github/ropenscilabs/allcontributors": {
+	"id": "github/ropenscilabs/allcontributors",
+	"title": "github/ropenscilabs/allcontributors",
+	"url": " https://rseng.github.io/software/repository/github/ropenscilabs/allcontributors",
+	"content": "all-contributions as an R package"
 	},
-	"github/tensorflow/tensorflow": {
-	"id": "github/tensorflow/tensorflow",
-	"title": "github/tensorflow/tensorflow",
-	"url": " https://rseng.github.io/software/repository/github/tensorflow/tensorflow",
-	"content": "An Open Source Machine Learning Framework for Everyone"
+	"github/ropenscilabs/r2readthedocs": {
+	"id": "github/ropenscilabs/r2readthedocs",
+	"title": "github/ropenscilabs/r2readthedocs",
+	"url": " https://rseng.github.io/software/repository/github/ropenscilabs/r2readthedocs",
+	"content": "Convert R package documentation to a &#39;readthedocs&#39; website"
 	},
-	"github/sidmohite/nimbus-astro": {
-	"id": "github/sidmohite/nimbus-astro",
-	"title": "github/sidmohite/nimbus-astro",
-	"url": " https://rseng.github.io/software/repository/github/sidmohite/nimbus-astro",
-	"content": "A Bayesian inference framework to constrain kilonova models."
+	"github/ropenscilabs/qcoder": {
+	"id": "github/ropenscilabs/qcoder",
+	"title": "github/ropenscilabs/qcoder",
+	"url": " https://rseng.github.io/software/repository/github/ropenscilabs/qcoder",
+	"content": "Lightweight package to do qualitative coding"
 	},
-	"github/christopherlovell/sengi": {
-	"id": "github/christopherlovell/sengi",
-	"title": "github/christopherlovell/sengi",
-	"url": " https://rseng.github.io/software/repository/github/christopherlovell/sengi",
-	"content": "A small, fast, interactive viewer for SPS spectral outputs"
+	"github/rorybarnes/EqTide": {
+	"id": "github/rorybarnes/EqTide",
+	"title": "github/rorybarnes/EqTide",
+	"url": " https://rseng.github.io/software/repository/github/rorybarnes/EqTide",
+	"content": "Source code for Equilibrium Tide calculations"
 	},
-	"github/lcpp-org/RustBCA": {
-	"id": "github/lcpp-org/RustBCA",
-	"title": "github/lcpp-org/RustBCA",
-	"url": " https://rseng.github.io/software/repository/github/lcpp-org/RustBCA",
-	"content": "A Binary Collision Approximation (BCA) code for arbitrary ion-material interactions"
+	"github/tpapp/MCMCDiagnostics.jl": {
+	"id": "github/tpapp/MCMCDiagnostics.jl",
+	"title": "github/tpapp/MCMCDiagnostics.jl",
+	"url": " https://rseng.github.io/software/repository/github/tpapp/MCMCDiagnostics.jl",
+	"content": "Markov Chain Monte Carlo convergence diagnostics in Julia"
 	},
-	"github/Trovemaster/exocross": {
-	"id": "github/Trovemaster/exocross",
-	"title": "github/Trovemaster/exocross",
-	"url": " https://rseng.github.io/software/repository/github/Trovemaster/exocross",
-	"content": "Fortran 2003 code to generate molecular spectra, partition functions, lifetimes, cooling functions etc  using ExoMol line lists"
+	"github/Guo-Jian-Wang/colfi": {
+	"id": "github/Guo-Jian-Wang/colfi",
+	"title": "github/Guo-Jian-Wang/colfi",
+	"url": " https://rseng.github.io/software/repository/github/Guo-Jian-Wang/colfi",
+	"content": "Likelihood-free Inference with neural density estimators"
 	},
-	"github/Trovemaster/TROVE": {
-	"id": "github/Trovemaster/TROVE",
-	"title": "github/Trovemaster/TROVE",
-	"url": " https://rseng.github.io/software/repository/github/Trovemaster/TROVE",
-	"content": "Theoretical ROVibrational Energies: A variational program for accurate nuclear motion calculations"
+	"github/julie-forman-kay-lab/SPyCi-PDB": {
+	"id": "github/julie-forman-kay-lab/SPyCi-PDB",
+	"title": "github/julie-forman-kay-lab/SPyCi-PDB",
+	"url": " https://rseng.github.io/software/repository/github/julie-forman-kay-lab/SPyCi-PDB",
+	"content": "Structural Python (Back) Calculator Interface for PDBs"
 	},
-	"github/Trovemaster/Duo": {
-	"id": "github/Trovemaster/Duo",
-	"title": "github/Trovemaster/Duo",
-	"url": " https://rseng.github.io/software/repository/github/Trovemaster/Duo",
-	"content": "Duo is a diatomic code for solving a fully coupled rovibronic Schroedinger equation"
+	"github/phpuech/OT_Analysis": {
+	"id": "github/phpuech/OT_Analysis",
+	"title": "github/phpuech/OT_Analysis",
+	"url": " https://rseng.github.io/software/repository/github/phpuech/OT_Analysis",
+	"content": "Software for optical data force analysis / JPK Nanowizard"
 	},
-	"github/lanl/CosmicEmu": {
-	"id": "github/lanl/CosmicEmu",
-	"title": "github/lanl/CosmicEmu",
-	"url": " https://rseng.github.io/software/repository/github/lanl/CosmicEmu",
-	"content": "Fast predictions for the matter power spectrum."
+	"github/lanl/scico": {
+	"id": "github/lanl/scico",
+	"title": "github/lanl/scico",
+	"url": " https://rseng.github.io/software/repository/github/lanl/scico",
+	"content": "Scientific Computational Imaging COde"
 	},
 	"github/lanl/swiftbat_python": {
 	"id": "github/lanl/swiftbat_python",
@@ -7587,23 +6837,23 @@
 	"url": " https://rseng.github.io/software/repository/github/lanl/swiftbat_python",
 	"content": "Utilities for BAT instrument on the Neil Gehrels Swift Observatory satellite"
 	},
+	"github/lanl/CosmicEmu": {
+	"id": "github/lanl/CosmicEmu",
+	"title": "github/lanl/CosmicEmu",
+	"url": " https://rseng.github.io/software/repository/github/lanl/CosmicEmu",
+	"content": "Fast predictions for the matter power spectrum."
+	},
 	"github/lanl/singularity-eos": {
 	"id": "github/lanl/singularity-eos",
 	"title": "github/lanl/singularity-eos",
 	"url": " https://rseng.github.io/software/repository/github/lanl/singularity-eos",
 	"content": "Performance portable equations of state and mixed cell closures"
 	},
-	"github/lanl/scico": {
-	"id": "github/lanl/scico",
-	"title": "github/lanl/scico",
-	"url": " https://rseng.github.io/software/repository/github/lanl/scico",
-	"content": "Scientific Computational Imaging COde"
-	},
-	"github/lanl/PyBNF": {
-	"id": "github/lanl/PyBNF",
-	"title": "github/lanl/PyBNF",
-	"url": " https://rseng.github.io/software/repository/github/lanl/PyBNF",
-	"content": "An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuristic optimization algorithms, and an adaptive Markov chain Monte Carlo (MCMC) sampling algorithm."
+	"github/lanl/spiner": {
+	"id": "github/lanl/spiner",
+	"title": "github/lanl/spiner",
+	"url": " https://rseng.github.io/software/repository/github/lanl/spiner",
+	"content": "Performance portable routines for generic, tabulated, multi-dimensional data"
 	},
 	"github/lanl/GLUE": {
 	"id": "github/lanl/GLUE",
@@ -7611,2813 +6861,2873 @@
 	"url": " https://rseng.github.io/software/repository/github/lanl/GLUE",
 	"content": "Generic Learning User Enablement Code"
 	},
-	"github/lanl/spiner": {
-	"id": "github/lanl/spiner",
-	"title": "github/lanl/spiner",
-	"url": " https://rseng.github.io/software/repository/github/lanl/spiner",
-	"content": "Performance portable routines for generic, tabulated, multi-dimensional data"
+	"github/lanl/PyBNF": {
+	"id": "github/lanl/PyBNF",
+	"title": "github/lanl/PyBNF",
+	"url": " https://rseng.github.io/software/repository/github/lanl/PyBNF",
+	"content": "An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuristic optimization algorithms, and an adaptive Markov chain Monte Carlo (MCMC) sampling algorithm."
 	},
-	"github/Electrostatics/apbs": {
-	"id": "github/Electrostatics/apbs",
-	"title": "github/Electrostatics/apbs",
-	"url": " https://rseng.github.io/software/repository/github/Electrostatics/apbs",
-	"content": "Software for biomolecular electrostatics and solvation calculations"
+	"github/multiwavelength/redshifts": {
+	"id": "github/multiwavelength/redshifts",
+	"title": "github/multiwavelength/redshifts",
+	"url": " https://rseng.github.io/software/repository/github/multiwavelength/redshifts",
+	"content": "Search the VizieR and NED databases for spectroscopic redshifts around positions of interest."
 	},
-	"github/Jashcraf/poke": {
-	"id": "github/Jashcraf/poke",
-	"title": "github/Jashcraf/poke",
-	"url": " https://rseng.github.io/software/repository/github/Jashcraf/poke",
-	"content": "Poke (pronounced poh-keh) is a Polarization Ray Tracing and Gaussian Beamlet module for Python"
+	"github/multiwavelength/gleam": {
+	"id": "github/multiwavelength/gleam",
+	"title": "github/multiwavelength/gleam",
+	"url": " https://rseng.github.io/software/repository/github/multiwavelength/gleam",
+	"content": "Galaxy Line Emission &amp; Absorption Modeling"
 	},
-	"github/EdoardoCarlesi/cmbeasy": {
-	"id": "github/EdoardoCarlesi/cmbeasy",
-	"title": "github/EdoardoCarlesi/cmbeasy",
-	"url": " https://rseng.github.io/software/repository/github/EdoardoCarlesi/cmbeasy",
-	"content": "My CMBEASY implementation"
+	"github/expressionanalysis/ea-utils": {
+	"id": "github/expressionanalysis/ea-utils",
+	"title": "github/expressionanalysis/ea-utils",
+	"url": " https://rseng.github.io/software/repository/github/expressionanalysis/ea-utils",
+	"content": "Automatically exported from code.google.com/p/ea-utils"
 	},
-	"github/vavrines/Kinetic.jl": {
-	"id": "github/vavrines/Kinetic.jl",
-	"title": "github/vavrines/Kinetic.jl",
-	"url": " https://rseng.github.io/software/repository/github/vavrines/Kinetic.jl",
-	"content": "Universal modeling and simulation of fluid dynamics upon machine learning"
+	"github/intake/intake": {
+	"id": "github/intake/intake",
+	"title": "github/intake/intake",
+	"url": " https://rseng.github.io/software/repository/github/intake/intake",
+	"content": "Intake is a lightweight package for finding, investigating, loading and disseminating data."
 	},
-	"github/icecube/FIRESONG": {
-	"id": "github/icecube/FIRESONG",
-	"title": "github/icecube/FIRESONG",
-	"url": " https://rseng.github.io/software/repository/github/icecube/FIRESONG",
-	"content": "FIRst Extragalactic Simulation Of Neutrino and Gamma-ray"
+	"github/ekaterinailin/AltaiPony": {
+	"id": "github/ekaterinailin/AltaiPony",
+	"title": "github/ekaterinailin/AltaiPony",
+	"url": " https://rseng.github.io/software/repository/github/ekaterinailin/AltaiPony",
+	"content": "Find flares in Kepler, K2, and TESS light curves. Notebooks for quickstart inside."
 	},
-	"github/icecube/TauRunner": {
-	"id": "github/icecube/TauRunner",
-	"title": "github/icecube/TauRunner",
-	"url": " https://rseng.github.io/software/repository/github/icecube/TauRunner",
-	"content": "Code to propagate tau neutrinos at very high energies"
+	"github/big-data-lab-team/spot": {
+	"id": "github/big-data-lab-team/spot",
+	"title": "github/big-data-lab-team/spot",
+	"url": " https://rseng.github.io/software/repository/github/big-data-lab-team/spot",
+	"content": "A set of tools to evaluate the reproducibility of computations"
 	},
-	"github/icecube/toise": {
-	"id": "github/icecube/toise",
-	"title": "github/icecube/toise",
-	"url": " https://rseng.github.io/software/repository/github/icecube/toise",
-	"content": "Framework to describe the performance of high-energy neutrino detectors"
+	"github/octapps/octapps": {
+	"id": "github/octapps/octapps",
+	"title": "github/octapps/octapps",
+	"url": " https://rseng.github.io/software/repository/github/octapps/octapps",
+	"content": "Library of Octave functions for continuous gravitational-wave data analysis"
 	},
-	"github/rgerum/pylustrator": {
-	"id": "github/rgerum/pylustrator",
-	"title": "github/rgerum/pylustrator",
-	"url": " https://rseng.github.io/software/repository/github/rgerum/pylustrator",
-	"content": "Visualisations of data are at the core of every publication of scientific research results. They have to be as clear as possible to facilitate the communication of research. As data can have different formats and shapes, the visualisations often have to be adapted to reflect the data as well as possible. We developed Pylustrator, an interface to directly edit python generated matplotlib graphs to finalize them for publication. Therefore, subplots can be resized and dragged around by the mouse, text and annotations can be added. The changes can be saved to the initial plot file as python code."
+	"github/cma2015/iwa-miRNA": {
+	"id": "github/cma2015/iwa-miRNA",
+	"title": "github/cma2015/iwa-miRNA",
+	"url": " https://rseng.github.io/software/repository/github/cma2015/iwa-miRNA",
+	"content": "iwa-miRNA is a web-based platform for interactive annotation of plant miRNAs"
 	},
-	"github/AlgoLab/shark": {
-	"id": "github/AlgoLab/shark",
-	"title": "github/AlgoLab/shark",
-	"url": " https://rseng.github.io/software/repository/github/AlgoLab/shark",
-	"content": "Mapping-free filtering of irrelevant RNA-Seq reads"
+	"github/cmillion/gPhoton": {
+	"id": "github/cmillion/gPhoton",
+	"title": "github/cmillion/gPhoton",
+	"url": " https://rseng.github.io/software/repository/github/cmillion/gPhoton",
+	"content": "The GALEX photon database and tools project."
 	},
-	"github/ConorMacBride/mcalf": {
-	"id": "github/ConorMacBride/mcalf",
-	"title": "github/ConorMacBride/mcalf",
-	"url": " https://rseng.github.io/software/repository/github/ConorMacBride/mcalf",
-	"content": "MCALF: Multi-Component Atmospheric Line Fitting"
+	"github/trixi-framework/HOHQMesh": {
+	"id": "github/trixi-framework/HOHQMesh",
+	"title": "github/trixi-framework/HOHQMesh",
+	"url": " https://rseng.github.io/software/repository/github/trixi-framework/HOHQMesh",
+	"content": "High Order Hex-Quad Mesh (HOHQMesh) package to automatically generate all-quadrilateral meshes with high order boundary information."
 	},
-	"github/online-behaviour/machine-learning": {
-	"id": "github/online-behaviour/machine-learning",
-	"title": "github/online-behaviour/machine-learning",
-	"url": " https://rseng.github.io/software/repository/github/online-behaviour/machine-learning",
-	"content": "Python scripts for tweet retrieval and machine learning in the eScience project Automated Analysis of Online Behaviour on Social Media"
+	"github/cosmoinin/MGPT": {
+	"id": "github/cosmoinin/MGPT",
+	"title": "github/cosmoinin/MGPT",
+	"url": " https://rseng.github.io/software/repository/github/cosmoinin/MGPT",
+	"content": "Modified gravity perturbation theory code"
 	},
-	"github/online-behaviour/find-journalists": {
-	"id": "github/online-behaviour/find-journalists",
-	"title": "github/online-behaviour/find-journalists",
-	"url": " https://rseng.github.io/software/repository/github/online-behaviour/find-journalists",
-	"content": "None"
+	"github/jkluter/MLG": {
+	"id": "github/jkluter/MLG",
+	"title": "github/jkluter/MLG",
+	"url": " https://rseng.github.io/software/repository/github/jkluter/MLG",
+	"content": "Microlensing with Gaia"
 	},
-	"github/TBLabFJD/DBofAFs": {
-	"id": "github/TBLabFJD/DBofAFs",
-	"title": "github/TBLabFJD/DBofAFs",
-	"url": " https://rseng.github.io/software/repository/github/TBLabFJD/DBofAFs",
-	"content": "Pipeline for database creation of allele frequencies "
+	"github/lwang-astro/PeTar": {
+	"id": "github/lwang-astro/PeTar",
+	"title": "github/lwang-astro/PeTar",
+	"url": " https://rseng.github.io/software/repository/github/lwang-astro/PeTar",
+	"content": "PeTar is a high-performance N-body code for modelling the evolution of star clusters and tidal streams, including the effect of galactic potential, dynamics of binary and hierarchical system, single and binary stellar evolution."
 	},
-	"github/skovaka/UNCALLED": {
-	"id": "github/skovaka/UNCALLED",
-	"title": "github/skovaka/UNCALLED",
-	"url": " https://rseng.github.io/software/repository/github/skovaka/UNCALLED",
-	"content": "Raw nanopore signal mapper that enables real-time targeted sequencing"
+	"github/lwang-astro/SDAR": {
+	"id": "github/lwang-astro/SDAR",
+	"title": "github/lwang-astro/SDAR",
+	"url": " https://rseng.github.io/software/repository/github/lwang-astro/SDAR",
+	"content": "Slow-down Algorithmic regularization (SDAR) code for solving few-body problems"
 	},
-	"github/genner-lab/meta-fish-lib": {
-	"id": "github/genner-lab/meta-fish-lib",
-	"title": "github/genner-lab/meta-fish-lib",
-	"url": " https://rseng.github.io/software/repository/github/genner-lab/meta-fish-lib",
-	"content": "A generalised, dynamic DNA reference library for metabarcoding of fishes"
+	"github/genome/somatic-sniper": {
+	"id": "github/genome/somatic-sniper",
+	"title": "github/genome/somatic-sniper",
+	"url": " https://rseng.github.io/software/repository/github/genome/somatic-sniper",
+	"content": "A tool to call somatic single nucleotide variants."
 	},
-	"github/storyofthewolf/ExoRT": {
-	"id": "github/storyofthewolf/ExoRT",
-	"title": "github/storyofthewolf/ExoRT",
-	"url": " https://rseng.github.io/software/repository/github/storyofthewolf/ExoRT",
-	"content": "radiative transfer code, designed for use with CESM/CAM"
+	"github/genome/bam-readcount": {
+	"id": "github/genome/bam-readcount",
+	"title": "github/genome/bam-readcount",
+	"url": " https://rseng.github.io/software/repository/github/genome/bam-readcount",
+	"content": "Count bases in BAM/CRAM files"
 	},
-	"github/storyofthewolf/ExoCAM": {
-	"id": "github/storyofthewolf/ExoCAM",
-	"title": "github/storyofthewolf/ExoCAM",
-	"url": " https://rseng.github.io/software/repository/github/storyofthewolf/ExoCAM",
-	"content": "None"
+	"github/bxskdh/TSTA": {
+	"id": "github/bxskdh/TSTA",
+	"title": "github/bxskdh/TSTA",
+	"url": " https://rseng.github.io/software/repository/github/bxskdh/TSTA",
+	"content": "pairwise and multiple sequence alignment accelerated by simd and threads"
 	},
-	"github/ethicsai/ethical-smart-grid": {
-	"id": "github/ethicsai/ethical-smart-grid",
-	"title": "github/ethicsai/ethical-smart-grid",
-	"url": " https://rseng.github.io/software/repository/github/ethicsai/ethical-smart-grid",
-	"content": "Reinforcement learning environment for learning ethical behaviours in a SmartGrid use-case."
+	"github/OpenGene/fastp": {
+	"id": "github/OpenGene/fastp",
+	"title": "github/OpenGene/fastp",
+	"url": " https://rseng.github.io/software/repository/github/OpenGene/fastp",
+	"content": "An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)"
 	},
-	"github/davidkipping/MAH": {
-	"id": "github/davidkipping/MAH",
-	"title": "github/davidkipping/MAH",
-	"url": " https://rseng.github.io/software/repository/github/davidkipping/MAH",
-	"content": "Calculate the posterior distribution of the &#34;minimum atmospheric height&#34; (MAH) of an exoplanet by inputting the joint posterior distribution of the mass and radius."
+	"github/OpenGene/fastv": {
+	"id": "github/OpenGene/fastv",
+	"title": "github/OpenGene/fastv",
+	"url": " https://rseng.github.io/software/repository/github/OpenGene/fastv",
+	"content": "An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19."
 	},
-	"github/davidkipping/flicker": {
-	"id": "github/davidkipping/flicker",
-	"title": "github/davidkipping/flicker",
-	"url": " https://rseng.github.io/software/repository/github/davidkipping/flicker",
-	"content": "None"
+	"github/reizio/reiz.io": {
+	"id": "github/reizio/reiz.io",
+	"title": "github/reizio/reiz.io",
+	"url": " https://rseng.github.io/software/repository/github/reizio/reiz.io",
+	"content": "Structural Source Code Search Engine"
 	},
-	"github/davidkipping/inversebeta": {
-	"id": "github/davidkipping/inversebeta",
-	"title": "github/davidkipping/inversebeta",
-	"url": " https://rseng.github.io/software/repository/github/davidkipping/inversebeta",
-	"content": "Inverse transform sampler of the Beta distribution"
+	"github/DeepMIALab/UC-NfNet": {
+	"id": "github/DeepMIALab/UC-NfNet",
+	"title": "github/DeepMIALab/UC-NfNet",
+	"url": " https://rseng.github.io/software/repository/github/DeepMIALab/UC-NfNet",
+	"content": "None"
 	},
-	"github/davidkipping/MACULA": {
-	"id": "github/davidkipping/MACULA",
-	"title": "github/davidkipping/MACULA",
-	"url": " https://rseng.github.io/software/repository/github/davidkipping/MACULA",
+	"github/dtcc-platform/dtcc-builder": {
+	"id": "github/dtcc-platform/dtcc-builder",
+	"title": "github/dtcc-platform/dtcc-builder",
+	"url": " https://rseng.github.io/software/repository/github/dtcc-platform/dtcc-builder",
 	"content": "None"
 	},
-	"github/davidkipping/LDC3": {
-	"id": "github/davidkipping/LDC3",
-	"title": "github/davidkipping/LDC3",
-	"url": " https://rseng.github.io/software/repository/github/davidkipping/LDC3",
+	"github/myfang2021/VIPPID": {
+	"id": "github/myfang2021/VIPPID",
+	"title": "github/myfang2021/VIPPID",
+	"url": " https://rseng.github.io/software/repository/github/myfang2021/VIPPID",
 	"content": "None"
 	},
-	"github/davidkipping/ECCSAMPLES": {
-	"id": "github/davidkipping/ECCSAMPLES",
-	"title": "github/davidkipping/ECCSAMPLES",
-	"url": " https://rseng.github.io/software/repository/github/davidkipping/ECCSAMPLES",
-	"content": "Sample from an informative prior to enforce a realistic prior on parameters such as the orbital eccentricity of an extrasolar planet. This is done by evaluating the inverse cumulative density function of the prior distribution."
+	"github/metabolomicsworkbench/MetGENE": {
+	"id": "github/metabolomicsworkbench/MetGENE",
+	"title": "github/metabolomicsworkbench/MetGENE",
+	"url": " https://rseng.github.io/software/repository/github/metabolomicsworkbench/MetGENE",
+	"content": "Gene-centric Metabolomics Information Retrieval Tool"
+	},
+	"github/StephenJHardy/SL1M": {
+	"id": "github/StephenJHardy/SL1M",
+	"title": "github/StephenJHardy/SL1M",
+	"url": " https://rseng.github.io/software/repository/github/StephenJHardy/SL1M",
+	"content": "Radio Synthesis Deconvolution using L1 Minimisation"
+	},
+	"github/abeelen/powspec": {
+	"id": "github/abeelen/powspec",
+	"title": "github/abeelen/powspec",
+	"url": " https://rseng.github.io/software/repository/github/abeelen/powspec",
+	"content": "Power and cross spectral density of 2D arrays"
+	},
+	"github/tsfloss/DensityFieldTools": {
+	"id": "github/tsfloss/DensityFieldTools",
+	"title": "github/tsfloss/DensityFieldTools",
+	"url": " https://rseng.github.io/software/repository/github/tsfloss/DensityFieldTools",
+	"content": "Tools for manipulating density fields and measuring power spectra and bispectra"
+	},
+	"github/tsfloss/BFast": {
+	"id": "github/tsfloss/BFast",
+	"title": "github/tsfloss/BFast",
+	"url": " https://rseng.github.io/software/repository/github/tsfloss/BFast",
+	"content": "A fast GPU based bispectrum estimator implemented using JAX"
+	},
+	"github/tsfloss/URecon": {
+	"id": "github/tsfloss/URecon",
+	"title": "github/tsfloss/URecon",
+	"url": " https://rseng.github.io/software/repository/github/tsfloss/URecon",
+	"content": "U-Net Architecture to reconstruct the initial conditions of N-Body simulations"
+	},
+	"github/valerio-marra/CalPriorSNIa": {
+	"id": "github/valerio-marra/CalPriorSNIa",
+	"title": "github/valerio-marra/CalPriorSNIa",
+	"url": " https://rseng.github.io/software/repository/github/valerio-marra/CalPriorSNIa",
+	"content": "Effective calibration prior on the absolute magnitude of Type Ia supernovae"
+	},
+	"github/fwhigh/stellar-locus-regression": {
+	"id": "github/fwhigh/stellar-locus-regression",
+	"title": "github/fwhigh/stellar-locus-regression",
+	"url": " https://rseng.github.io/software/repository/github/fwhigh/stellar-locus-regression",
+	"content": "Automatically exported from code.google.com/p/stellar-locus-regression"
+	},
+	"github/MRChemSoft/mrchem": {
+	"id": "github/MRChemSoft/mrchem",
+	"title": "github/MRChemSoft/mrchem",
+	"url": " https://rseng.github.io/software/repository/github/MRChemSoft/mrchem",
+	"content": "MultiResolution Chemistry"
+	},
+	"github/hjens/lasso_spectra": {
+	"id": "github/hjens/lasso_spectra",
+	"title": "github/hjens/lasso_spectra",
+	"url": " https://rseng.github.io/software/repository/github/hjens/lasso_spectra",
+	"content": "Functions for predicting properties from galaxy spectra, using Lasso regression"
 	},
-	"github/nhurleywalker/fits_warp": {
-	"id": "github/nhurleywalker/fits_warp",
-	"title": "github/nhurleywalker/fits_warp",
-	"url": " https://rseng.github.io/software/repository/github/nhurleywalker/fits_warp",
-	"content": "Warp catalogues and images to dedistort the effects of the ionosphere"
+	"github/SuLab/Wikidata-phenomizer": {
+	"id": "github/SuLab/Wikidata-phenomizer",
+	"title": "github/SuLab/Wikidata-phenomizer",
+	"url": " https://rseng.github.io/software/repository/github/SuLab/Wikidata-phenomizer",
+	"content": "Incorporate wikidata statements into phenomizer"
 	},
-	"github/geza-kovacs/tran_k2": {
-	"id": "github/geza-kovacs/tran_k2",
-	"title": "github/geza-kovacs/tran_k2",
-	"url": " https://rseng.github.io/software/repository/github/geza-kovacs/tran_k2",
-	"content": "Planetary transit search in the presence of stellar variability and instrumental systematics"
+	"github/cwieder/py-ssPA": {
+	"id": "github/cwieder/py-ssPA",
+	"title": "github/cwieder/py-ssPA",
+	"url": " https://rseng.github.io/software/repository/github/cwieder/py-ssPA",
+	"content": "Single sample pathway analysis tools for omics data"
 	},
-	"github/ABM4ALL/Melodie": {
-	"id": "github/ABM4ALL/Melodie",
-	"title": "github/ABM4ALL/Melodie",
-	"url": " https://rseng.github.io/software/repository/github/ABM4ALL/Melodie",
-	"content": "A general framework for developing agent-based models in Python."
+	"github/sapearson/HSS": {
+	"id": "github/sapearson/HSS",
+	"title": "github/sapearson/HSS",
+	"url": " https://rseng.github.io/software/repository/github/sapearson/HSS",
+	"content": "The Hough Stream Spotter (HSS)"
 	},
-	"github/DebduttaPaul/luminosity_function_of_sGRBs": {
-	"id": "github/DebduttaPaul/luminosity_function_of_sGRBs",
-	"title": "github/DebduttaPaul/luminosity_function_of_sGRBs",
-	"url": " https://rseng.github.io/software/repository/github/DebduttaPaul/luminosity_function_of_sGRBs",
-	"content": "This is a repository containing databases and scripts for short GRB luminosity function work."
+	"github/richteague/gofish": {
+	"id": "github/richteague/gofish",
+	"title": "github/richteague/gofish",
+	"url": " https://rseng.github.io/software/repository/github/richteague/gofish",
+	"content": "🎣    Fish for line detections by exploiting the known velocity structure of the disk."
 	},
-	"github/DebduttaPaul/luminosity_function_of_lGRBs": {
-	"id": "github/DebduttaPaul/luminosity_function_of_lGRBs",
-	"title": "github/DebduttaPaul/luminosity_function_of_lGRBs",
-	"url": " https://rseng.github.io/software/repository/github/DebduttaPaul/luminosity_function_of_lGRBs",
-	"content": "None"
+	"github/richteague/disksurf": {
+	"id": "github/richteague/disksurf",
+	"title": "github/richteague/disksurf",
+	"url": " https://rseng.github.io/software/repository/github/richteague/disksurf",
+	"content": "Measure the molecular emission surface of protoplanetary disks. Based on Pinte et al. (2018)."
 	},
-	"github/dh4gan/grapus": {
-	"id": "github/dh4gan/grapus",
-	"title": "github/dh4gan/grapus",
-	"url": " https://rseng.github.io/software/repository/github/dh4gan/grapus",
-	"content": "Population synthesis of self-gravitating disc fragmentation and tidal downsizing in protostellar discs"
+	"github/richteague/eddy": {
+	"id": "github/richteague/eddy",
+	"title": "github/richteague/eddy",
+	"url": " https://rseng.github.io/software/repository/github/richteague/eddy",
+	"content": "Python tools to recover precise rotation profiles of disks."
 	},
-	"github/dh4gan/taktent": {
-	"id": "github/dh4gan/taktent",
-	"title": "github/dh4gan/taktent",
-	"url": " https://rseng.github.io/software/repository/github/dh4gan/taktent",
-	"content": "A Python framework for agent-based simulations of (radio) SETI observations"
+	"github/richteague/bettermoments": {
+	"id": "github/richteague/bettermoments",
+	"title": "github/richteague/bettermoments",
+	"url": " https://rseng.github.io/software/repository/github/richteague/bettermoments",
+	"content": "A robust way to calculate line-of-sight velocities."
 	},
-	"github/dh4gan/oberon": {
-	"id": "github/dh4gan/oberon",
-	"title": "github/dh4gan/oberon",
-	"url": " https://rseng.github.io/software/repository/github/dh4gan/oberon",
-	"content": "This C++ code models the climate of Earthlike planets under the effects of an arbitrary number and arrangement of other bodies, such as stars, planets and moons."
+	"github/guillochon/MOSFiT": {
+	"id": "github/guillochon/MOSFiT",
+	"title": "github/guillochon/MOSFiT",
+	"url": " https://rseng.github.io/software/repository/github/guillochon/MOSFiT",
+	"content": "Modular Open Source Fitter for Transients"
 	},
-	"github/dh4gan/tache": {
-	"id": "github/dh4gan/tache",
-	"title": "github/dh4gan/tache",
-	"url": " https://rseng.github.io/software/repository/github/dh4gan/tache",
-	"content": "TensoriAl Classification of Hydrodynamic Elements"
+	"github/SatelliteShorelines/CoastSeg": {
+	"id": "github/SatelliteShorelines/CoastSeg",
+	"title": "github/SatelliteShorelines/CoastSeg",
+	"url": " https://rseng.github.io/software/repository/github/SatelliteShorelines/CoastSeg",
+	"content": "An interactive toolbox for downloading satellite imagery, applying image segmentation models, mapping shoreline positions and more. The mapping extension for CoastSat and Zoo."
 	},
-	"github/connor-lab/vapor": {
-	"id": "github/connor-lab/vapor",
-	"title": "github/connor-lab/vapor",
-	"url": " https://rseng.github.io/software/repository/github/connor-lab/vapor",
-	"content": "is a tool for classification of Influenza samples from raw short read sequence data for downstream bioinformatics analysis."
+	"github/BU-ISCIII/taranis": {
+	"id": "github/BU-ISCIII/taranis",
+	"title": "github/BU-ISCIII/taranis",
+	"url": " https://rseng.github.io/software/repository/github/BU-ISCIII/taranis",
+	"content": "cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch."
 	},
-	"github/kokron/skyLine": {
-	"id": "github/kokron/skyLine",
-	"title": "github/kokron/skyLine",
-	"url": " https://rseng.github.io/software/repository/github/kokron/skyLine",
-	"content": "None"
+	"github/BU-ISCIII/iSkyLIMS": {
+	"id": "github/BU-ISCIII/iSkyLIMS",
+	"title": "github/BU-ISCIII/iSkyLIMS",
+	"url": " https://rseng.github.io/software/repository/github/BU-ISCIII/iSkyLIMS",
+	"content": "is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management."
 	},
-	"github/kokron/anzu": {
-	"id": "github/kokron/anzu",
-	"title": "github/kokron/anzu",
-	"url": " https://rseng.github.io/software/repository/github/kokron/anzu",
-	"content": "Measurements and emulation of Lagrangian bias models for clustering and lensing cross-correlations."
+	"github/BU-ISCIII/plasmidID": {
+	"id": "github/BU-ISCIII/plasmidID",
+	"title": "github/BU-ISCIII/plasmidID",
+	"url": " https://rseng.github.io/software/repository/github/BU-ISCIII/plasmidID",
+	"content": "PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification."
 	},
-	"github/changhoonhahn/haloflow": {
-	"id": "github/changhoonhahn/haloflow",
-	"title": "github/changhoonhahn/haloflow",
-	"url": " https://rseng.github.io/software/repository/github/changhoonhahn/haloflow",
-	"content": "Simulation-Based Inference (SBI) using forward modeled galaxy photometry"
+	"github/CQCL/qujax": {
+	"id": "github/CQCL/qujax",
+	"title": "github/CQCL/qujax",
+	"url": " https://rseng.github.io/software/repository/github/CQCL/qujax",
+	"content": "Simulating quantum circuits with JAX"
 	},
-	"github/changhoonhahn/pySpectrum": {
-	"id": "github/changhoonhahn/pySpectrum",
-	"title": "github/changhoonhahn/pySpectrum",
-	"url": " https://rseng.github.io/software/repository/github/changhoonhahn/pySpectrum",
-	"content": "python package to measure power spectrum and bispectrum"
+	"github/hungyipu/Odyssey": {
+	"id": "github/hungyipu/Odyssey",
+	"title": "github/hungyipu/Odyssey",
+	"url": " https://rseng.github.io/software/repository/github/hungyipu/Odyssey",
+	"content": "Odyssey: a public, GPU-based  GRRT (general relativistic radiative transfer) code"
 	},
-	"github/changhoonhahn/provabgs": {
-	"id": "github/changhoonhahn/provabgs",
-	"title": "github/changhoonhahn/provabgs",
-	"url": " https://rseng.github.io/software/repository/github/changhoonhahn/provabgs",
-	"content": "PRObabilistic Value-Added Bright Galaxy Survey (PROVABGS)"
+	"github/biboyd/SALSA": {
+	"id": "github/biboyd/SALSA",
+	"title": "github/biboyd/SALSA",
+	"url": " https://rseng.github.io/software/repository/github/biboyd/SALSA",
+	"content": "Salsa is a Python package for constructing synthetic absorber catalogs from astrophysical hydrodynamic simulations"
 	},
-	"github/PathoGenOmics-Lab/get_mnv": {
-	"id": "github/PathoGenOmics-Lab/get_mnv",
-	"title": "github/PathoGenOmics-Lab/get_mnv",
-	"url": " https://rseng.github.io/software/repository/github/PathoGenOmics-Lab/get_mnv",
-	"content": "Identifies multiple SNVs within the same codon, reclassifies them as MNVs, and accurately computes resulting amino acid changes from genomic reads"
+	"github/mmahmoudian/sivs": {
+	"id": "github/mmahmoudian/sivs",
+	"title": "github/mmahmoudian/sivs",
+	"url": " https://rseng.github.io/software/repository/github/mmahmoudian/sivs",
+	"content": "An iterative feature selection method that internally utilizes varius Machine Learning methods that have embeded feature reduction in order to shrink down the feature space into a small and yet robust set."
 	},
-	"github/flu-crew/smot": {
-	"id": "github/flu-crew/smot",
-	"title": "github/flu-crew/smot",
-	"url": " https://rseng.github.io/software/repository/github/flu-crew/smot",
-	"content": "Simple Manipulation Of Trees"
+	"github/arnauqb/qwind": {
+	"id": "github/arnauqb/qwind",
+	"title": "github/arnauqb/qwind",
+	"url": " https://rseng.github.io/software/repository/github/arnauqb/qwind",
+	"content": "A non-hydrodynamical model for AGN line-drive winds."
 	},
-	"github/sinanozaydin/pide": {
-	"id": "github/sinanozaydin/pide",
-	"title": "github/sinanozaydin/pide",
-	"url": " https://rseng.github.io/software/repository/github/sinanozaydin/pide",
-	"content": "A python library for petrophysical calculations."
+	"github/arnauqb/Qwind.jl": {
+	"id": "github/arnauqb/Qwind.jl",
+	"title": "github/arnauqb/Qwind.jl",
+	"url": " https://rseng.github.io/software/repository/github/arnauqb/Qwind.jl",
+	"content": "Computation of UV line-driven winds in AGNs"
 	},
-	"github/Wang-Ruihui/A-live-homogeneous-database-of-solar-active-regions": {
-	"id": "github/Wang-Ruihui/A-live-homogeneous-database-of-solar-active-regions",
-	"title": "github/Wang-Ruihui/A-live-homogeneous-database-of-solar-active-regions",
-	"url": " https://rseng.github.io/software/repository/github/Wang-Ruihui/A-live-homogeneous-database-of-solar-active-regions",
-	"content": "This is a live homogeneous database of solar active regions (ARs).  It&#39;s produced by an automatic detection method of AR."
+	"github/jaimerzp/limberjack.jl": {
+	"id": "github/jaimerzp/limberjack.jl",
+	"title": "github/jaimerzp/limberjack.jl",
+	"url": " https://rseng.github.io/software/repository/github/jaimerzp/limberjack.jl",
+	"content": "Auto-differentiable methods for Cosmology"
 	},
-	"github/Imperial-visualizations/Physics-Visualizations": {
-	"id": "github/Imperial-visualizations/Physics-Visualizations",
-	"title": "github/Imperial-visualizations/Physics-Visualizations",
-	"url": " https://rseng.github.io/software/repository/github/Imperial-visualizations/Physics-Visualizations",
-	"content": "A computational project at Imperial College London to develop interactive visualizations for education."
+	"github/RWTH-EBC/FiLiP": {
+	"id": "github/RWTH-EBC/FiLiP",
+	"title": "github/RWTH-EBC/FiLiP",
+	"url": " https://rseng.github.io/software/repository/github/RWTH-EBC/FiLiP",
+	"content": "FIWARE Library for Python (FiLiP) to work with FIWARE API"
 	},
-	"github/yungkipreos/Min-CaLM": {
-	"id": "github/yungkipreos/Min-CaLM",
-	"title": "github/yungkipreos/Min-CaLM",
-	"url": " https://rseng.github.io/software/repository/github/yungkipreos/Min-CaLM",
-	"content": "This python package can perform automated mineral compositional analysis on debris disk spectra. It will determine which minerals are present and what their relative abundances are within the debris disk. This code is used in a paper that has been submitted to the American Journal of Undergraduate Research (AJUR), titled &#34;An Unbiased Mineral Compositional Analysis Technique for Debris Disks&#34; by Yung Kipreos and Dr. Inseok Song.."
+	"github/RWTH-EBC/AixCaliBuHA": {
+	"id": "github/RWTH-EBC/AixCaliBuHA",
+	"title": "github/RWTH-EBC/AixCaliBuHA",
+	"url": " https://rseng.github.io/software/repository/github/RWTH-EBC/AixCaliBuHA",
+	"content": "Wield this tool to be King Arthur of your models."
 	},
-	"github/pierrebarbera/epa-ng": {
-	"id": "github/pierrebarbera/epa-ng",
-	"title": "github/pierrebarbera/epa-ng",
-	"url": " https://rseng.github.io/software/repository/github/pierrebarbera/epa-ng",
-	"content": "Massively parallel phylogenetic placement of genetic sequences"
+	"github/bricoletc/delfies": {
+	"id": "github/bricoletc/delfies",
+	"title": "github/bricoletc/delfies",
+	"url": " https://rseng.github.io/software/repository/github/bricoletc/delfies",
+	"content": "Querying genomes for evidence of Programmed DNA Elimination"
 	},
-	"github/devries/analytic_infall": {
-	"id": "github/devries/analytic_infall",
-	"title": "github/devries/analytic_infall",
-	"url": " https://rseng.github.io/software/repository/github/devries/analytic_infall",
-	"content": "Analytic 1-D radiative transfer model of blue-asymmetric spectral line profiles from infalling molecular clouds. The model is presented in the paper, &#34;Molecular Line Profile Fitting with Analytic Radiative Transfer Models&#34; by De Vries &amp; Myers (2005)."
+	"github/m-a-d-n-e-s-s/madness": {
+	"id": "github/m-a-d-n-e-s-s/madness",
+	"title": "github/m-a-d-n-e-s-s/madness",
+	"url": " https://rseng.github.io/software/repository/github/m-a-d-n-e-s-s/madness",
+	"content": "Multiresolution Adaptive Numerical Environment for Scientific Simulation"
 	},
-	"github/DeepMIALab/UC-NfNet": {
-	"id": "github/DeepMIALab/UC-NfNet",
-	"title": "github/DeepMIALab/UC-NfNet",
-	"url": " https://rseng.github.io/software/repository/github/DeepMIALab/UC-NfNet",
-	"content": "None"
+	"github/VALENCE-software/VALENCE": {
+	"id": "github/VALENCE-software/VALENCE",
+	"title": "github/VALENCE-software/VALENCE",
+	"url": " https://rseng.github.io/software/repository/github/VALENCE-software/VALENCE",
+	"content": "quantum chemistry software"
 	},
-	"github/Ge-Lab/USAT": {
-	"id": "github/Ge-Lab/USAT",
-	"title": "github/Ge-Lab/USAT",
-	"url": " https://rseng.github.io/software/repository/github/Ge-Lab/USAT",
-	"content": "USAT is a software for analyzing and visualizing the Tandem Repeat (TR) alleles"
+	"github/ldliao/jointVIP": {
+	"id": "github/ldliao/jointVIP",
+	"title": "github/ldliao/jointVIP",
+	"url": " https://rseng.github.io/software/repository/github/ldliao/jointVIP",
+	"content": "Prioritize variables in observational study design through the joint variable importance plot; shiny app: https://ldliao.shinyapps.io/jointVIP/"
 	},
-	"github/greendw/AntabGMVA": {
-	"id": "github/greendw/AntabGMVA",
-	"title": "github/greendw/AntabGMVA",
-	"url": " https://rseng.github.io/software/repository/github/greendw/AntabGMVA",
-	"content": "A Python tool for managing GMVA metadata"
+	"github/IMMM-SFA/mosartwmpy": {
+	"id": "github/IMMM-SFA/mosartwmpy",
+	"title": "github/IMMM-SFA/mosartwmpy",
+	"url": " https://rseng.github.io/software/repository/github/IMMM-SFA/mosartwmpy",
+	"content": "Python translation of MOSART-WM: a water routing and management model"
 	},
-	"github/darthoctopus/reggae": {
-	"id": "github/darthoctopus/reggae",
-	"title": "github/darthoctopus/reggae",
-	"url": " https://rseng.github.io/software/repository/github/darthoctopus/reggae",
-	"content": "pbjam for dipole modes"
+	"github/IMMM-SFA/gamut": {
+	"id": "github/IMMM-SFA/gamut",
+	"title": "github/IMMM-SFA/gamut",
+	"url": " https://rseng.github.io/software/repository/github/IMMM-SFA/gamut",
+	"content": "An R package to identify multi-sector teleconnection complexity"
 	},
-	"github/matthewholman/assist": {
-	"id": "github/matthewholman/assist",
-	"title": "github/matthewholman/assist",
-	"url": " https://rseng.github.io/software/repository/github/matthewholman/assist",
-	"content": "ASSIST is a software package for ephemeris-quality integrations of test particles."
+	"github/IMMM-SFA/tell": {
+	"id": "github/IMMM-SFA/tell",
+	"title": "github/IMMM-SFA/tell",
+	"url": " https://rseng.github.io/software/repository/github/IMMM-SFA/tell",
+	"content": "A model to predict Total ELectricity Loads (TELL)"
 	},
-	"github/hongli-ma/RNANetMotif": {
-	"id": "github/hongli-ma/RNANetMotif",
-	"title": "github/hongli-ma/RNANetMotif",
-	"url": " https://rseng.github.io/software/repository/github/hongli-ma/RNANetMotif",
-	"content": "RNA structural motif finder"
+	"github/IMMM-SFA/naturf": {
+	"id": "github/IMMM-SFA/naturf",
+	"title": "github/IMMM-SFA/naturf",
+	"url": " https://rseng.github.io/software/repository/github/IMMM-SFA/naturf",
+	"content": "NATURF: Neighborhood Adaptive Tissues for Urban Resilience Futures"
 	},
-	"github/pfeinsper/drone-swarm-search": {
-	"id": "github/pfeinsper/drone-swarm-search",
-	"title": "github/pfeinsper/drone-swarm-search",
-	"url": " https://rseng.github.io/software/repository/github/pfeinsper/drone-swarm-search",
-	"content": "The Drone Swarm Search project provides an environment for SAR missions built on PettingZoo, where agents, represented by drones, are tasked with locating targets identified as shipwrecked individuals."
+	"github/IMMM-SFA/statemodify": {
+	"id": "github/IMMM-SFA/statemodify",
+	"title": "github/IMMM-SFA/statemodify",
+	"url": " https://rseng.github.io/software/repository/github/IMMM-SFA/statemodify",
+	"content": "A package to modify StateMod&#39;s input and output files for exploratory modeling"
 	},
-	"github/AstraZeneca/kallisto": {
-	"id": "github/AstraZeneca/kallisto",
-	"title": "github/AstraZeneca/kallisto",
-	"url": " https://rseng.github.io/software/repository/github/AstraZeneca/kallisto",
-	"content": "Efficiently calculate 3D-atomic/molecular features for quantitative structure-activity relationship approaches."
+	"github/Taywee/args": {
+	"id": "github/Taywee/args",
+	"title": "github/Taywee/args",
+	"url": " https://rseng.github.io/software/repository/github/Taywee/args",
+	"content": "  A simple header-only C++ argument parser library. Supposed to be flexible and powerful, and attempts to be compatible with the functionality of the Python standard argparse library (though not necessarily the API)."
 	},
-	"github/dirostri/CREPE": {
-	"id": "github/dirostri/CREPE",
-	"title": "github/dirostri/CREPE",
-	"url": " https://rseng.github.io/software/repository/github/dirostri/CREPE",
-	"content": "GitHub Repository for CREPE: A tool for Transcription Factor Cataloguing"
+	"github/MartianColonist/POSEIDON": {
+	"id": "github/MartianColonist/POSEIDON",
+	"title": "github/MartianColonist/POSEIDON",
+	"url": " https://rseng.github.io/software/repository/github/MartianColonist/POSEIDON",
+	"content": "Multidimensional atmospheric retrieval of exoplanet spectra."
 	},
-	"github/David-McKenna/udpPacketManager": {
-	"id": "github/David-McKenna/udpPacketManager",
-	"title": "github/David-McKenna/udpPacketManager",
-	"url": " https://rseng.github.io/software/repository/github/David-McKenna/udpPacketManager",
-	"content": "C Library for handling CEP packet data from an international LOFAR station"
+	"github/MartianColonist/Cthulhu": {
+	"id": "github/MartianColonist/Cthulhu",
+	"title": "github/MartianColonist/Cthulhu",
+	"url": " https://rseng.github.io/software/repository/github/MartianColonist/Cthulhu",
+	"content": "A Python package to calculate cross sections for substellar atmospheres"
 	},
-	"github/pynbody/pynbody": {
-	"id": "github/pynbody/pynbody",
-	"title": "github/pynbody/pynbody",
-	"url": " https://rseng.github.io/software/repository/github/pynbody/pynbody",
-	"content": "N-body and hydro analysis tools for Python 3. (Older versions support Python 2.)"
+	"github/MorgansLab/OSCILOS_Long": {
+	"id": "github/MorgansLab/OSCILOS_Long",
+	"title": "github/MorgansLab/OSCILOS_Long",
+	"url": " https://rseng.github.io/software/repository/github/MorgansLab/OSCILOS_Long",
+	"content": "OSCILOS_long is an open source code for simulating combustion instabilities. OSCILOS_lite was developed at Imperial College London by Prof. Aimee S. Morgans and co-workers. The code is open source and written in MATLAB."
 	},
-	"github/pynbody/genetIC": {
-	"id": "github/pynbody/genetIC",
-	"title": "github/pynbody/genetIC",
-	"url": " https://rseng.github.io/software/repository/github/pynbody/genetIC",
-	"content": "The GM initial conditions generator"
+	"github/equitable-equations/fqar": {
+	"id": "github/equitable-equations/fqar",
+	"title": "github/equitable-equations/fqar",
+	"url": " https://rseng.github.io/software/repository/github/equitable-equations/fqar",
+	"content": "The fqar package provides R tools for downloading and analyzing floristic quality assessment data from www.universalFQA.org"
 	},
-	"github/pynbody/tangos": {
-	"id": "github/pynbody/tangos",
-	"title": "github/pynbody/tangos",
-	"url": " https://rseng.github.io/software/repository/github/pynbody/tangos",
-	"content": "The Agile Numerical Galaxy Organisation System"
+	"github/martinfleis/clustergram": {
+	"id": "github/martinfleis/clustergram",
+	"title": "github/martinfleis/clustergram",
+	"url": " https://rseng.github.io/software/repository/github/martinfleis/clustergram",
+	"content": "Clustergram - Visualization and diagnostics for cluster analysis in Python"
 	},
-	"github/EdwardBerman/shopt": {
-	"id": "github/EdwardBerman/shopt",
-	"title": "github/EdwardBerman/shopt",
-	"url": " https://rseng.github.io/software/repository/github/EdwardBerman/shopt",
-	"content": "Shear Optimization with ShOpt.jl, a julia package for empirical point spread function characterizations"
+	"github/LangeLab/SQuAPP": {
+	"id": "github/LangeLab/SQuAPP",
+	"title": "github/LangeLab/SQuAPP",
+	"url": " https://rseng.github.io/software/repository/github/LangeLab/SQuAPP",
+	"content": "Shiny App allows streamlined analysis of multiple levels of proteomics data."
 	},
-	"github/lpantano/seqcluster": {
-	"id": "github/lpantano/seqcluster",
-	"title": "github/lpantano/seqcluster",
-	"url": " https://rseng.github.io/software/repository/github/lpantano/seqcluster",
-	"content": "small RNA analysis from NGS data"
+	"github/ianvcaldas/smalldisco": {
+	"id": "github/ianvcaldas/smalldisco",
+	"title": "github/ianvcaldas/smalldisco",
+	"url": " https://rseng.github.io/software/repository/github/ianvcaldas/smalldisco",
+	"content": "Discovery of siRNA regions and small RNA tail quantification"
 	},
-	"github/lpantano/seqbuster": {
-	"id": "github/lpantano/seqbuster",
-	"title": "github/lpantano/seqbuster",
-	"url": " https://rseng.github.io/software/repository/github/lpantano/seqbuster",
-	"content": "pipeline for the analysis of small RNA data"
+	"github/amrex-astro/Castro": {
+	"id": "github/amrex-astro/Castro",
+	"title": "github/amrex-astro/Castro",
+	"url": " https://rseng.github.io/software/repository/github/amrex-astro/Castro",
+	"content": "An adaptive mesh, astrophysical compressible (radiation-, magneto-)  hydrodynamics simulation code for massively parallel CPU and GPU architectures."
 	},
-	"github/twinl/website": {
-	"id": "github/twinl/website",
-	"title": "github/twinl/website",
-	"url": " https://rseng.github.io/software/repository/github/twinl/website",
-	"content": "TwiNL: website code"
+	"github/amrex-astro/MAESTRO": {
+	"id": "github/amrex-astro/MAESTRO",
+	"title": "github/amrex-astro/MAESTRO",
+	"url": " https://rseng.github.io/software/repository/github/amrex-astro/MAESTRO",
+	"content": "A low Mach number stellar hydrodynamics code"
 	},
-	"github/ymocquar/HOODESolver.jl": {
-	"id": "github/ymocquar/HOODESolver.jl",
-	"title": "github/ymocquar/HOODESolver.jl",
-	"url": " https://rseng.github.io/software/repository/github/ymocquar/HOODESolver.jl",
-	"content": "High Oscillatory Ordinary Differential Equation Solver (write in Julia language)"
+	"github/amrex-astro/Nyx": {
+	"id": "github/amrex-astro/Nyx",
+	"title": "github/amrex-astro/Nyx",
+	"url": " https://rseng.github.io/software/repository/github/amrex-astro/Nyx",
+	"content": "An adaptive mesh, N-body hydro cosmological simulation code"
 	},
-	"github/cieslar/Indri": {
-	"id": "github/cieslar/Indri",
-	"title": "github/cieslar/Indri",
-	"url": " https://rseng.github.io/software/repository/github/cieslar/Indri",
-	"content": "The Markov chain Monte Carlo population synthesis code of single pulsars in the Milky Way"
+	"github/CPM-project/MCPM": {
+	"id": "github/CPM-project/MCPM",
+	"title": "github/CPM-project/MCPM",
+	"url": " https://rseng.github.io/software/repository/github/CPM-project/MCPM",
+	"content": "Modified CPM method"
 	},
-	"github/wasserman-group/pyCADMium": {
-	"id": "github/wasserman-group/pyCADMium",
-	"title": "github/wasserman-group/pyCADMium",
-	"url": " https://rseng.github.io/software/repository/github/wasserman-group/pyCADMium",
-	"content": "Solve the Kohn-Sham equations on a prolate spheroidal grid. "
+	"github/paulbrodersen/netgraph": {
+	"id": "github/paulbrodersen/netgraph",
+	"title": "github/paulbrodersen/netgraph",
+	"url": " https://rseng.github.io/software/repository/github/paulbrodersen/netgraph",
+	"content": "Publication-quality network visualisations in python"
 	},
-	"github/snijderlab/stitch": {
-	"id": "github/snijderlab/stitch",
-	"title": "github/snijderlab/stitch",
-	"url": " https://rseng.github.io/software/repository/github/snijderlab/stitch",
-	"content": "Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling"
+	"github/nlesc-ave/ave-rest-service": {
+	"id": "github/nlesc-ave/ave-rest-service",
+	"title": "github/nlesc-ave/ave-rest-service",
+	"url": " https://rseng.github.io/software/repository/github/nlesc-ave/ave-rest-service",
+	"content": "visualize (clustered) single-nucleotide variants across genomes"
 	},
-	"github/N-Wouda/ALNS": {
-	"id": "github/N-Wouda/ALNS",
-	"title": "github/N-Wouda/ALNS",
-	"url": " https://rseng.github.io/software/repository/github/N-Wouda/ALNS",
-	"content": "Adaptive large neighbourhood search (and more!) in Python."
+	"github/ToyotaCRDL/mahos": {
+	"id": "github/ToyotaCRDL/mahos",
+	"title": "github/ToyotaCRDL/mahos",
+	"url": " https://rseng.github.io/software/repository/github/ToyotaCRDL/mahos",
+	"content": "Measurement Automation Handling and Orchestration System"
 	},
-	"github/sciris/sciris": {
-	"id": "github/sciris/sciris",
-	"title": "github/sciris/sciris",
-	"url": " https://rseng.github.io/software/repository/github/sciris/sciris",
-	"content": "Fast, flexible tools to simplify scientific Python"
+	"github/CosmoLike/CosmoCov": {
+	"id": "github/CosmoLike/CosmoCov",
+	"title": "github/CosmoLike/CosmoCov",
+	"url": " https://rseng.github.io/software/repository/github/CosmoLike/CosmoCov",
+	"content": "Configuration Space Covariances for Projected Galaxy 2-Point Statistics"
 	},
-	"github/mrempel/geohexviz": {
-	"id": "github/mrempel/geohexviz",
-	"title": "github/mrempel/geohexviz",
-	"url": " https://rseng.github.io/software/repository/github/mrempel/geohexviz",
-	"content": "GeoHexViz - generating publication-quality geospatical visualization of hexagonally binned data"
+	"github/bertrandplez/Turbospectrum2019": {
+	"id": "github/bertrandplez/Turbospectrum2019",
+	"title": "github/bertrandplez/Turbospectrum2019",
+	"url": " https://rseng.github.io/software/repository/github/bertrandplez/Turbospectrum2019",
+	"content": "synthetic spectrum calculation companion to MARCS"
 	},
-	"github/ChristopherWilks/megadepth": {
-	"id": "github/ChristopherWilks/megadepth",
-	"title": "github/ChristopherWilks/megadepth",
-	"url": " https://rseng.github.io/software/repository/github/ChristopherWilks/megadepth",
-	"content": "BigWig and BAM utilities"
+	"github/bertrandplez/Turbospectrum_NLTE": {
+	"id": "github/bertrandplez/Turbospectrum_NLTE",
+	"title": "github/bertrandplez/Turbospectrum_NLTE",
+	"url": " https://rseng.github.io/software/repository/github/bertrandplez/Turbospectrum_NLTE",
+	"content": "Turbospectrum v20 with NLTE capability"
 	},
-	"github/malonge/RagTag": {
-	"id": "github/malonge/RagTag",
-	"title": "github/malonge/RagTag",
-	"url": " https://rseng.github.io/software/repository/github/malonge/RagTag",
-	"content": "Tools for fast and flexible genome assembly scaffolding and improvement"
+	"github/Gaiana/nirdust": {
+	"id": "github/Gaiana/nirdust",
+	"title": "github/Gaiana/nirdust",
+	"url": " https://rseng.github.io/software/repository/github/Gaiana/nirdust",
+	"content": "Nirdust is a python package that uses K-band (2.2 micrometers) spectra to measure the temperature of the dust heated by a type 2 Active Galactic Nuclei (AGN) accretion disk."
 	},
-	"github/dirmeier/surjectors": {
-	"id": "github/dirmeier/surjectors",
-	"title": "github/dirmeier/surjectors",
-	"url": " https://rseng.github.io/software/repository/github/dirmeier/surjectors",
-	"content": "Surjection layers for density estimation with normalizing flows"
+	"github/bmvdgeijn/WASP": {
+	"id": "github/bmvdgeijn/WASP",
+	"title": "github/bmvdgeijn/WASP",
+	"url": " https://rseng.github.io/software/repository/github/bmvdgeijn/WASP",
+	"content": "WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery"
 	},
-	"github/Shamir-Lab/domino_web": {
-	"id": "github/Shamir-Lab/domino_web",
-	"title": "github/Shamir-Lab/domino_web",
-	"url": " https://rseng.github.io/software/repository/github/Shamir-Lab/domino_web",
-	"content": "None"
+	"github/FePhyFoFum/phyx": {
+	"id": "github/FePhyFoFum/phyx",
+	"title": "github/FePhyFoFum/phyx",
+	"url": " https://rseng.github.io/software/repository/github/FePhyFoFum/phyx",
+	"content": "phylogenetics tools for linux (and other mostly posix compliant) computers"
 	},
-	"github/aneeshnaik/spam": {
-	"id": "github/aneeshnaik/spam",
-	"title": "github/aneeshnaik/spam",
-	"url": " https://rseng.github.io/software/repository/github/aneeshnaik/spam",
-	"content": "spam is a Python 3 package, used to search for imprints of Hu-Sawicki f(R) gravity in the rotation curves of the SPARC sample."
+	"github/introlab/opentera": {
+	"id": "github/introlab/opentera",
+	"title": "github/introlab/opentera",
+	"url": " https://rseng.github.io/software/repository/github/introlab/opentera",
+	"content": "OpenTera - Open TeleRehabilitation Server and Micro-Services"
 	},
-	"github/aneeshnaik/lintsampler": {
-	"id": "github/aneeshnaik/lintsampler",
-	"title": "github/aneeshnaik/lintsampler",
-	"url": " https://rseng.github.io/software/repository/github/aneeshnaik/lintsampler",
-	"content": "Efficient random sampling via linear interpolation."
+	"github/rgerum/pylustrator": {
+	"id": "github/rgerum/pylustrator",
+	"title": "github/rgerum/pylustrator",
+	"url": " https://rseng.github.io/software/repository/github/rgerum/pylustrator",
+	"content": "Visualisations of data are at the core of every publication of scientific research results. They have to be as clear as possible to facilitate the communication of research. As data can have different formats and shapes, the visualisations often have to be adapted to reflect the data as well as possible. We developed Pylustrator, an interface to directly edit python generated matplotlib graphs to finalize them for publication. Therefore, subplots can be resized and dragged around by the mouse, text and annotations can be added. The changes can be saved to the initial plot file as python code."
 	},
-	"github/akleroy/phangs_imaging_scripts": {
-	"id": "github/akleroy/phangs_imaging_scripts",
-	"title": "github/akleroy/phangs_imaging_scripts",
-	"url": " https://rseng.github.io/software/repository/github/akleroy/phangs_imaging_scripts",
-	"content": "CASA+python imaging and product creation scripts for PHANGS-ALMA"
+	"github/jdiasn/lidarSuit": {
+	"id": "github/jdiasn/lidarSuit",
+	"title": "github/jdiasn/lidarSuit",
+	"url": " https://rseng.github.io/software/repository/github/jdiasn/lidarSuit",
+	"content": "Archived. Please check https://github.com/jdiasn/lidarwind"
 	},
-	"github/jean-pierreBoth/gsearch": {
-	"id": "github/jean-pierreBoth/gsearch",
-	"title": "github/jean-pierreBoth/gsearch",
-	"url": " https://rseng.github.io/software/repository/github/jean-pierreBoth/gsearch",
-	"content": "Approximate nearest neighbour search for microbial genomes based on hash metric"
+	"github/sbraden/circle-craters": {
+	"id": "github/sbraden/circle-craters",
+	"title": "github/sbraden/circle-craters",
+	"url": " https://rseng.github.io/software/repository/github/sbraden/circle-craters",
+	"content": "A planetary science crater-counting plugin for QGIS "
 	},
-	"github/PabloVD/CosmoGraphNet": {
-	"id": "github/PabloVD/CosmoGraphNet",
-	"title": "github/PabloVD/CosmoGraphNet",
-	"url": " https://rseng.github.io/software/repository/github/PabloVD/CosmoGraphNet",
-	"content": "Graph Neural Networks to predict the cosmological parameters or the galaxy power spectrum from galaxy catalogs."
+	"github/KerryAM-R/ggVolcanoR": {
+	"id": "github/KerryAM-R/ggVolcanoR",
+	"title": "github/KerryAM-R/ggVolcanoR",
+	"url": " https://rseng.github.io/software/repository/github/KerryAM-R/ggVolcanoR",
+	"content": "None"
 	},
-	"github/PabloVD/HaloGraphNet": {
-	"id": "github/PabloVD/HaloGraphNet",
-	"title": "github/PabloVD/HaloGraphNet",
-	"url": " https://rseng.github.io/software/repository/github/PabloVD/HaloGraphNet",
-	"content": "Predict halo masses from simulations via graph neural networks"
+	"github/jfowkes/pycutest": {
+	"id": "github/jfowkes/pycutest",
+	"title": "github/jfowkes/pycutest",
+	"url": " https://rseng.github.io/software/repository/github/jfowkes/pycutest",
+	"content": "Python interface to CUTEst"
 	},
-	"github/PabloVD/21cmDeepLearning": {
-	"id": "github/PabloVD/21cmDeepLearning",
-	"title": "github/PabloVD/21cmDeepLearning",
-	"url": " https://rseng.github.io/software/repository/github/PabloVD/21cmDeepLearning",
-	"content": "Python codes to extract the matter density field from a 21 cm map."
+	"github/dingshandeng/diskmint": {
+	"id": "github/dingshandeng/diskmint",
+	"title": "github/dingshandeng/diskmint",
+	"url": " https://rseng.github.io/software/repository/github/dingshandeng/diskmint",
+	"content": "DiskMINT (Disk Model For INdividual Targets): a tool to estimate disk masses with CO isotopologues"
 	},
-	"github/PabloVD/HAYASHI": {
-	"id": "github/PabloVD/HAYASHI",
-	"title": "github/PabloVD/HAYASHI",
-	"url": " https://rseng.github.io/software/repository/github/PabloVD/HAYASHI",
-	"content": "Python library for 21 cm forest computations."
+	"github/hallamlab/TreeSAPP": {
+	"id": "github/hallamlab/TreeSAPP",
+	"title": "github/hallamlab/TreeSAPP",
+	"url": " https://rseng.github.io/software/repository/github/hallamlab/TreeSAPP",
+	"content": "A Python package for gene-centric taxonomic and functional classification using phylogenetic placement"
 	},
-	"github/chasmani/piecewise-regression": {
-	"id": "github/chasmani/piecewise-regression",
-	"title": "github/chasmani/piecewise-regression",
-	"url": " https://rseng.github.io/software/repository/github/chasmani/piecewise-regression",
-	"content": "piecewise-regression (aka segmented regression) in python. For fitting straight line models to data with one or more breakpoints where the gradient changes. "
+	"github/LandSciTech/ccviR": {
+	"id": "github/LandSciTech/ccviR",
+	"title": "github/LandSciTech/ccviR",
+	"url": " https://rseng.github.io/software/repository/github/LandSciTech/ccviR",
+	"content": "Implement NatureServe climate change vulnerability index in R"
 	},
-	"github/dgbowl/yadg": {
-	"id": "github/dgbowl/yadg",
-	"title": "github/dgbowl/yadg",
-	"url": " https://rseng.github.io/software/repository/github/dgbowl/yadg",
-	"content": "yadg: yet another datagram"
+	"github/ec363/fpcountr": {
+	"id": "github/ec363/fpcountr",
+	"title": "github/ec363/fpcountr",
+	"url": " https://rseng.github.io/software/repository/github/ec363/fpcountr",
+	"content": "Fluorescent protein calibration for plate readers"
 	},
-	"github/tonhingm/PHOTOe-v1": {
-	"id": "github/tonhingm/PHOTOe-v1",
-	"title": "github/tonhingm/PHOTOe-v1",
-	"url": " https://rseng.github.io/software/repository/github/tonhingm/PHOTOe-v1",
-	"content": "None"
+	"github/ec363/parsleyapp": {
+	"id": "github/ec363/parsleyapp",
+	"title": "github/ec363/parsleyapp",
+	"url": " https://rseng.github.io/software/repository/github/ec363/parsleyapp",
+	"content": "Data parsing (data extraction, tidying and metadata joining) for plate reader export files"
 	},
-	"github/DrSoulain/PREVIS": {
-	"id": "github/DrSoulain/PREVIS",
-	"title": "github/DrSoulain/PREVIS",
-	"url": " https://rseng.github.io/software/repository/github/DrSoulain/PREVIS",
-	"content": "Python Request Engine for Virtual Interferometric Survey"
+	"github/matthewholman/assist": {
+	"id": "github/matthewholman/assist",
+	"title": "github/matthewholman/assist",
+	"url": " https://rseng.github.io/software/repository/github/matthewholman/assist",
+	"content": "ASSIST is a software package for ephemeris-quality integrations of test particles."
 	},
-	"github/farhanferoz/BAMBI": {
-	"id": "github/farhanferoz/BAMBI",
-	"title": "github/farhanferoz/BAMBI",
-	"url": " https://rseng.github.io/software/repository/github/farhanferoz/BAMBI",
-	"content": "None"
+	"github/nickfarrow/GalacticDNSMass": {
+	"id": "github/nickfarrow/GalacticDNSMass",
+	"title": "github/nickfarrow/GalacticDNSMass",
+	"url": " https://rseng.github.io/software/repository/github/nickfarrow/GalacticDNSMass",
+	"content": "How heavy are Neutron Stars in binary systems within our Galaxy? A demonstration of how bayesian inference and nested sampling allows us to explore the mass distributions of Galactic Double Neutron Star systems."
 	},
-	"github/farhanferoz/MultiNest": {
-	"id": "github/farhanferoz/MultiNest",
-	"title": "github/farhanferoz/MultiNest",
-	"url": " https://rseng.github.io/software/repository/github/farhanferoz/MultiNest",
-	"content": "MultiNest is a Bayesian inference tool which calculates the evidence and explores the parameter space which may contain multiple posterior modes and pronounced (curving) degeneracies in moderately high dimensions. "
+	"github/sorenwacker/ProteomicsQC": {
+	"id": "github/sorenwacker/ProteomicsQC",
+	"title": "github/sorenwacker/ProteomicsQC",
+	"url": " https://rseng.github.io/software/repository/github/sorenwacker/ProteomicsQC",
+	"content": "Quality Control Pipeline Server for quantitative Proteomics"
 	},
-	"github/farhanferoz/SkyNet": {
-	"id": "github/farhanferoz/SkyNet",
-	"title": "github/farhanferoz/SkyNet",
-	"url": " https://rseng.github.io/software/repository/github/farhanferoz/SkyNet",
-	"content": "SkyNet is an efficient and robust neural network training code for machine learning."
+	"github/syasini/AstroPaint": {
+	"id": "github/syasini/AstroPaint",
+	"title": "github/syasini/AstroPaint",
+	"url": " https://rseng.github.io/software/repository/github/syasini/AstroPaint",
+	"content": "A python package for creating mock maps of astrophysical signals from a halo catalog"
 	},
-	"github/Nicole-DH/ACP-MLC": {
-	"id": "github/Nicole-DH/ACP-MLC",
-	"title": "github/Nicole-DH/ACP-MLC",
-	"url": " https://rseng.github.io/software/repository/github/Nicole-DH/ACP-MLC",
-	"content": "ACP-MLC: A two-level prediction engine for identification of anticancer peptides and multi-label classification of their functional types"
+	"github/floodlight-sports/floodlight": {
+	"id": "github/floodlight-sports/floodlight",
+	"title": "github/floodlight-sports/floodlight",
+	"url": " https://rseng.github.io/software/repository/github/floodlight-sports/floodlight",
+	"content": "Python package for streamlined analysis of sports data."
 	},
-	"github/Ciela-Institute/caustics": {
-	"id": "github/Ciela-Institute/caustics",
-	"title": "github/Ciela-Institute/caustics",
-	"url": " https://rseng.github.io/software/repository/github/Ciela-Institute/caustics",
-	"content": "A gravitational lensing simulator for the machine learning era."
+	"github/JieZheng-ShanghaiTech/PiLSL": {
+	"id": "github/JieZheng-ShanghaiTech/PiLSL",
+	"title": "github/JieZheng-ShanghaiTech/PiLSL",
+	"url": " https://rseng.github.io/software/repository/github/JieZheng-ShanghaiTech/PiLSL",
+	"content": "PiLSL is a pairwise interaction learning-based graph neural network (GNN) model for prediction of synthetic lethality (SL) as anti-cancer drug targets. It learns the representation of pairwise interaction between two genes from a knowledge graph (KG)."
 	},
-	"github/sib-swiss/glittr": {
-	"id": "github/sib-swiss/glittr",
-	"title": "github/sib-swiss/glittr",
-	"url": " https://rseng.github.io/software/repository/github/sib-swiss/glittr",
-	"content": "A web application for finding and comparing bioinformatics training materials on GitHub and GitLab"
+	"github/TingMAC/FrMLNet": {
+	"id": "github/TingMAC/FrMLNet",
+	"title": "github/TingMAC/FrMLNet",
+	"url": " https://rseng.github.io/software/repository/github/TingMAC/FrMLNet",
+	"content": "This is a implementation of training code of this paper “FrMLNet: Framelet-based Multi-level Network for Pansharpening”"
 	},
-	"github/sib-swiss/pftools3": {
-	"id": "github/sib-swiss/pftools3",
-	"title": "github/sib-swiss/pftools3",
-	"url": " https://rseng.github.io/software/repository/github/sib-swiss/pftools3",
-	"content": "A  suite of tools to build and search generalized profiles"
+	"github/ECSHackWeek/impedance.py": {
+	"id": "github/ECSHackWeek/impedance.py",
+	"title": "github/ECSHackWeek/impedance.py",
+	"url": " https://rseng.github.io/software/repository/github/ECSHackWeek/impedance.py",
+	"content": "A Python package for working with electrochemical impedance data"
 	},
-	"github/chhylp123/hifiasm": {
-	"id": "github/chhylp123/hifiasm",
-	"title": "github/chhylp123/hifiasm",
-	"url": " https://rseng.github.io/software/repository/github/chhylp123/hifiasm",
-	"content": "Hifiasm: a haplotype-resolved assembler for accurate Hifi reads "
+	"github/chianti-atomic/ChiantiPy": {
+	"id": "github/chianti-atomic/ChiantiPy",
+	"title": "github/chianti-atomic/ChiantiPy",
+	"url": " https://rseng.github.io/software/repository/github/chianti-atomic/ChiantiPy",
+	"content": "ChiantiPy is a python package to calculate the radiative properties of astrophysical plasmas based on the CHIANTI atomic database"
 	},
-	"github/jjmccollum/teiphy": {
-	"id": "github/jjmccollum/teiphy",
-	"title": "github/jjmccollum/teiphy",
-	"url": " https://rseng.github.io/software/repository/github/jjmccollum/teiphy",
-	"content": "A Python package for converting TEI XML collations to NEXUS and other formats"
+	"github/zhangyk8/sconce-scms": {
+	"id": "github/zhangyk8/sconce-scms",
+	"title": "github/zhangyk8/sconce-scms",
+	"url": " https://rseng.github.io/software/repository/github/zhangyk8/sconce-scms",
+	"content": "Spherical and Conic Cosmic Web Finders with Extended SCMS Algorithms"
 	},
-	"github/phillippro/agatha": {
-	"id": "github/phillippro/agatha",
-	"title": "github/phillippro/agatha",
-	"url": " https://rseng.github.io/software/repository/github/phillippro/agatha",
-	"content": "Disentangling period signals from correlated noise in a periodogram framework"
+	"github/IBM/topography-searcher": {
+	"id": "github/IBM/topography-searcher",
+	"title": "github/IBM/topography-searcher",
+	"url": " https://rseng.github.io/software/repository/github/IBM/topography-searcher",
+	"content": "This Python package is designed for mapping the solution space of machine learning models. An understanding of the organisation of the solution space can answer important questions about the reproducibility, explainability and performance of ML methods."
 	},
-	"github/phillippro/pexo": {
-	"id": "github/phillippro/pexo",
-	"title": "github/phillippro/pexo",
-	"url": " https://rseng.github.io/software/repository/github/phillippro/pexo",
-	"content": "a global modeling framework for ns timing, μas astrometry, and μm/s radial velocities"
+	"github/IBM/fold2seq": {
+	"id": "github/IBM/fold2seq",
+	"title": "github/IBM/fold2seq",
+	"url": " https://rseng.github.io/software/repository/github/IBM/fold2seq",
+	"content": "Code for Fold2Seq paper from ICML 2021"
 	},
-	"github/chervias/DustFilaments": {
-	"id": "github/chervias/DustFilaments",
-	"title": "github/chervias/DustFilaments",
-	"url": " https://rseng.github.io/software/repository/github/chervias/DustFilaments",
-	"content": "Paint filaments to produce a thermal dust full sky map at mm frequencies"
+	"github/tgrimes/SeqNet": {
+	"id": "github/tgrimes/SeqNet",
+	"title": "github/tgrimes/SeqNet",
+	"url": " https://rseng.github.io/software/repository/github/tgrimes/SeqNet",
+	"content": "An R package for simulating RNA-sequence datasets from regulatory networks"
 	},
-	"github/mrtommyb/ktransit": {
-	"id": "github/mrtommyb/ktransit",
-	"title": "github/mrtommyb/ktransit",
-	"url": " https://rseng.github.io/software/repository/github/mrtommyb/ktransit",
-	"content": "A simple exoplanet transit modeling tool in python"
+	"github/NathanSkene/MAGMA_Celltyping": {
+	"id": "github/NathanSkene/MAGMA_Celltyping",
+	"title": "github/NathanSkene/MAGMA_Celltyping",
+	"url": " https://rseng.github.io/software/repository/github/NathanSkene/MAGMA_Celltyping",
+	"content": "Find causal cell-types underlying complex trait genetics"
 	},
-	"github/BD2KGenomics/toil": {
-	"id": "github/BD2KGenomics/toil",
-	"title": "github/BD2KGenomics/toil",
-	"url": " https://rseng.github.io/software/repository/github/BD2KGenomics/toil",
-	"content": "A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python."
+	"github/NathanSkene/EWCE": {
+	"id": "github/NathanSkene/EWCE",
+	"title": "github/NathanSkene/EWCE",
+	"url": " https://rseng.github.io/software/repository/github/NathanSkene/EWCE",
+	"content": "Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage."
 	},
-	"github/deepmodeling/DMFF": {
-	"id": "github/deepmodeling/DMFF",
-	"title": "github/deepmodeling/DMFF",
-	"url": " https://rseng.github.io/software/repository/github/deepmodeling/DMFF",
-	"content": "DMFF (Differentiable Molecular Force Field) is a Jax-based python package that provides a full differentiable implementation of molecular force field models. "
+	"github/drphilmarshall/Pangloss": {
+	"id": "github/drphilmarshall/Pangloss",
+	"title": "github/drphilmarshall/Pangloss",
+	"url": " https://rseng.github.io/software/repository/github/drphilmarshall/Pangloss",
+	"content": "Line of sight mass reconstruction in the Universe"
 	},
-	"github/ejeschke/ginga": {
-	"id": "github/ejeschke/ginga",
-	"title": "github/ejeschke/ginga",
-	"url": " https://rseng.github.io/software/repository/github/ejeschke/ginga",
-	"content": "The Ginga astronomical FITS file viewer"
+	"github/drphilmarshall/HumVI": {
+	"id": "github/drphilmarshall/HumVI",
+	"title": "github/drphilmarshall/HumVI",
+	"url": " https://rseng.github.io/software/repository/github/drphilmarshall/HumVI",
+	"content": "Color composite image creation, mostly following the Lupton, Wherry et al (2004) algorithm."
 	},
-	"github/rpetit3/fastq-dl": {
-	"id": "github/rpetit3/fastq-dl",
-	"title": "github/rpetit3/fastq-dl",
-	"url": " https://rseng.github.io/software/repository/github/rpetit3/fastq-dl",
-	"content": "Download FASTQ files from SRA or ENA repositories."
+	"github/jamesrhester/Lerche.jl": {
+	"id": "github/jamesrhester/Lerche.jl",
+	"title": "github/jamesrhester/Lerche.jl",
+	"url": " https://rseng.github.io/software/repository/github/jamesrhester/Lerche.jl",
+	"content": "A Julia port of the Lark parser"
 	},
-	"github/rpetit3/fastq-scan": {
-	"id": "github/rpetit3/fastq-scan",
-	"title": "github/rpetit3/fastq-scan",
-	"url": " https://rseng.github.io/software/repository/github/rpetit3/fastq-scan",
-	"content": "Output FASTQ summary statistics in JSON format"
+	"github/COSMIC-PopSynth/COSMIC": {
+	"id": "github/COSMIC-PopSynth/COSMIC",
+	"title": "github/COSMIC-PopSynth/COSMIC",
+	"url": " https://rseng.github.io/software/repository/github/COSMIC-PopSynth/COSMIC",
+	"content": "COSMIC (Compact Object Synthesis and Monte Carlo Investigation Code)"
 	},
-	"github/jstuecker/adiabatic-tides": {
-	"id": "github/jstuecker/adiabatic-tides",
-	"title": "github/jstuecker/adiabatic-tides",
-	"url": " https://rseng.github.io/software/repository/github/jstuecker/adiabatic-tides",
-	"content": "Code for evaluating the tidal stripping of dark matter (sub)haloes in the adiabatic limit"
+	"github/opencollab/arpack-ng": {
+	"id": "github/opencollab/arpack-ng",
+	"title": "github/opencollab/arpack-ng",
+	"url": " https://rseng.github.io/software/repository/github/opencollab/arpack-ng",
+	"content": "Collection of Fortran77 subroutines designed to solve large scale eigenvalue problems."
 	},
-	"github/COMBINE-lab/libgff": {
-	"id": "github/COMBINE-lab/libgff",
-	"title": "github/COMBINE-lab/libgff",
-	"url": " https://rseng.github.io/software/repository/github/COMBINE-lab/libgff",
-	"content": "GFF/GTF parsing from cufflinks as a library"
+	"github/MrMinimal64/multivar_horner": {
+	"id": "github/MrMinimal64/multivar_horner",
+	"title": "github/MrMinimal64/multivar_horner",
+	"url": " https://rseng.github.io/software/repository/github/MrMinimal64/multivar_horner",
+	"content": "python package implementing a multivariate Horner scheme for efficiently evaluating multivariate polynomials "
 	},
-	"github/COMBINE-lab/cuttlefish": {
-	"id": "github/COMBINE-lab/cuttlefish",
-	"title": "github/COMBINE-lab/cuttlefish",
-	"url": " https://rseng.github.io/software/repository/github/COMBINE-lab/cuttlefish",
-	"content": "a fast, parallel, and very lightweight memory tool to construct the compacted de Bruijn graph from genome reference(s)."
+	"github/michauhl/RBPBench": {
+	"id": "github/michauhl/RBPBench",
+	"title": "github/michauhl/RBPBench",
+	"url": " https://rseng.github.io/software/repository/github/michauhl/RBPBench",
+	"content": "Evaluate CLIP-seq and other genomic region data using a comprehensive collection of known RBP binding motifs"
 	},
-	"github/COMBINE-lab/RapMap": {
-	"id": "github/COMBINE-lab/RapMap",
-	"title": "github/COMBINE-lab/RapMap",
-	"url": " https://rseng.github.io/software/repository/github/COMBINE-lab/RapMap",
-	"content": "Rapid sensitive and accurate read mapping via quasi-mapping"
+	"github/dnarayanan/powderday": {
+	"id": "github/dnarayanan/powderday",
+	"title": "github/dnarayanan/powderday",
+	"url": " https://rseng.github.io/software/repository/github/dnarayanan/powderday",
+	"content": "powderday dust radiative transfer"
 	},
-	"github/COMBINE-lab/simpleaf": {
-	"id": "github/COMBINE-lab/simpleaf",
-	"title": "github/COMBINE-lab/simpleaf",
-	"url": " https://rseng.github.io/software/repository/github/COMBINE-lab/simpleaf",
-	"content": "A rust framework to make using alevin-fry even simpler"
+	"github/RiccardoBiondi/segmentation": {
+	"id": "github/RiccardoBiondi/segmentation",
+	"title": "github/RiccardoBiondi/segmentation",
+	"url": " https://rseng.github.io/software/repository/github/RiccardoBiondi/segmentation",
+	"content": "COVID-19 Lung Segmentation"
 	},
-	"github/COMBINE-lab/pufferfish": {
-	"id": "github/COMBINE-lab/pufferfish",
-	"title": "github/COMBINE-lab/pufferfish",
-	"url": " https://rseng.github.io/software/repository/github/COMBINE-lab/pufferfish",
-	"content": "An efficient index for the colored, compacted, de Bruijn graph"
+	"github/ICESat2-SlideRule/paper": {
+	"id": "github/ICESat2-SlideRule/paper",
+	"title": "github/ICESat2-SlideRule/paper",
+	"url": " https://rseng.github.io/software/repository/github/ICESat2-SlideRule/paper",
+	"content": "JOSS paper materials"
 	},
-	"github/COMBINE-lab/alevin-fry": {
-	"id": "github/COMBINE-lab/alevin-fry",
-	"title": "github/COMBINE-lab/alevin-fry",
-	"url": " https://rseng.github.io/software/repository/github/COMBINE-lab/alevin-fry",
-	"content": "🐟 🔬🦀  alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding."
+	"github/kegiljarhus/pyBEMT": {
+	"id": "github/kegiljarhus/pyBEMT",
+	"title": "github/kegiljarhus/pyBEMT",
+	"url": " https://rseng.github.io/software/repository/github/kegiljarhus/pyBEMT",
+	"content": "Implementation of the Blade Element Momentum Theory for turbines and propellers in Python"
 	},
-	"github/COMBINE-lab/terminus": {
-	"id": "github/COMBINE-lab/terminus",
-	"title": "github/COMBINE-lab/terminus",
-	"url": " https://rseng.github.io/software/repository/github/COMBINE-lab/terminus",
-	"content": "enables the discovery of data-driven, robust transcript groups from RNA-seq data."
+	"github/jrkerns/pylinac": {
+	"id": "github/jrkerns/pylinac",
+	"title": "github/jrkerns/pylinac",
+	"url": " https://rseng.github.io/software/repository/github/jrkerns/pylinac",
+	"content": "A TG-142 toolkit for doing routine linear accelerator quality assurance"
 	},
-	"github/COMBINE-lab/salmon": {
-	"id": "github/COMBINE-lab/salmon",
-	"title": "github/COMBINE-lab/salmon",
-	"url": " https://rseng.github.io/software/repository/github/COMBINE-lab/salmon",
-	"content": "🐟 🍣 🍱 Highly-accurate &amp; wicked fast transcript-level quantification from RNA-seq reads using selective alignment"
+	"github/atchekho/harmpi": {
+	"id": "github/atchekho/harmpi",
+	"title": "github/atchekho/harmpi",
+	"url": " https://rseng.github.io/software/repository/github/atchekho/harmpi",
+	"content": "3D massively parallel general relativictic MHD code HARMPI"
 	},
-	"github/aL3x-O-o-Hung/CAT-Net": {
-	"id": "github/aL3x-O-o-Hung/CAT-Net",
-	"title": "github/aL3x-O-o-Hung/CAT-Net",
-	"url": " https://rseng.github.io/software/repository/github/aL3x-O-o-Hung/CAT-Net",
-	"content": "None"
+	"github/souzamonteiro/cnatool": {
+	"id": "github/souzamonteiro/cnatool",
+	"title": "github/souzamonteiro/cnatool",
+	"url": " https://rseng.github.io/software/repository/github/souzamonteiro/cnatool",
+	"content": "Complex Network Analysis Tool"
 	},
-	"github/martenlourens/pySDR": {
-	"id": "github/martenlourens/pySDR",
-	"title": "github/martenlourens/pySDR",
-	"url": " https://rseng.github.io/software/repository/github/martenlourens/pySDR",
-	"content": "A Python library for performing local gradient clustering (LGC) based sharpened dimensionality reduction (SDR)."
+	"github/vmalnathnambiar/exfilms": {
+	"id": "github/vmalnathnambiar/exfilms",
+	"title": "github/vmalnathnambiar/exfilms",
+	"url": " https://rseng.github.io/software/repository/github/vmalnathnambiar/exfilms",
+	"content": "A cross-platform, command line interface tool to extract mass spectrometry data from mzML formatted files, with filtering capabilities."
 	},
-	"github/martenlourens/SHARC": {
-	"id": "github/martenlourens/SHARC",
-	"title": "github/martenlourens/SHARC",
-	"url": " https://rseng.github.io/software/repository/github/martenlourens/SHARC",
-	"content": "A Python library for performing local gradient clustering (LGC) based SHArpened dimensionality Reduction (SDR) and Classification."
+	"github/forceflow1049/phast": {
+	"id": "github/forceflow1049/phast",
+	"title": "github/forceflow1049/phast",
+	"url": " https://rseng.github.io/software/repository/github/forceflow1049/phast",
+	"content": "PhAst: A flexible IDL astronomical image viewer"
 	},
-	"github/GalletFlorian/TATOO": {
-	"id": "github/GalletFlorian/TATOO",
-	"title": "github/GalletFlorian/TATOO",
-	"url": " https://rseng.github.io/software/repository/github/GalletFlorian/TATOO",
-	"content": "Tidal-chronology Age TOOl"
+	"github/smeingast/PNICER": {
+	"id": "github/smeingast/PNICER",
+	"title": "github/smeingast/PNICER",
+	"url": " https://rseng.github.io/software/repository/github/smeingast/PNICER",
+	"content": "None"
 	},
-	"github/beckrob/Photo-z-SQL": {
-	"id": "github/beckrob/Photo-z-SQL",
-	"title": "github/beckrob/Photo-z-SQL",
-	"url": " https://rseng.github.io/software/repository/github/beckrob/Photo-z-SQL",
-	"content": "C# template-based photometric redshift estimation framework"
+	"github/ivadomed/ivadomed": {
+	"id": "github/ivadomed/ivadomed",
+	"title": "github/ivadomed/ivadomed",
+	"url": " https://rseng.github.io/software/repository/github/ivadomed/ivadomed",
+	"content": "Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs."
 	},
-	"github/galaxyproject/galaxy-lib": {
-	"id": "github/galaxyproject/galaxy-lib",
-	"title": "github/galaxyproject/galaxy-lib",
-	"url": " https://rseng.github.io/software/repository/github/galaxyproject/galaxy-lib",
-	"content": "Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library."
+	"github/fzagaria/COpops": {
+	"id": "github/fzagaria/COpops",
+	"title": "github/fzagaria/COpops",
+	"url": " https://rseng.github.io/software/repository/github/fzagaria/COpops",
+	"content": "A Jupyter notebook with a simple class to compute CO sizes and fluxes using the semi-analytical method developed by Zagaria et al. (2023b)."
 	},
-	"github/galaxyproject/ansible-tiaas2": {
-	"id": "github/galaxyproject/ansible-tiaas2",
-	"title": "github/galaxyproject/ansible-tiaas2",
-	"url": " https://rseng.github.io/software/repository/github/galaxyproject/ansible-tiaas2",
-	"content": "Ansible role for deploying TIaaS2"
+	"github/xszhu-lab/AGImpute": {
+	"id": "github/xszhu-lab/AGImpute",
+	"title": "github/xszhu-lab/AGImpute",
+	"url": " https://rseng.github.io/software/repository/github/xszhu-lab/AGImpute",
+	"content": "A composite structure model for single-cell RNA-seq imputation"
 	},
-	"github/Shyentist/fish-r-man": {
-	"id": "github/Shyentist/fish-r-man",
-	"title": "github/Shyentist/fish-r-man",
-	"url": " https://rseng.github.io/software/repository/github/Shyentist/fish-r-man",
-	"content": "Open-Source Shiny R Dashboard to easily query, download, analyse and visualise Global Fishing Watch data on fishing effort."
+	"github/ratt-ru/montblanc": {
+	"id": "github/ratt-ru/montblanc",
+	"title": "github/ratt-ru/montblanc",
+	"url": " https://rseng.github.io/software/repository/github/ratt-ru/montblanc",
+	"content": "GPU-accelerated RIME implementations. An offshoot of the BIRO projects, and one of the foothills of Mt Exaflop."
 	},
-	"github/Battery-Intelligence-Lab/dtw-cpp": {
-	"id": "github/Battery-Intelligence-Lab/dtw-cpp",
-	"title": "github/Battery-Intelligence-Lab/dtw-cpp",
-	"url": " https://rseng.github.io/software/repository/github/Battery-Intelligence-Lab/dtw-cpp",
-	"content": "DTWC++"
+	"github/ratt-ru/solarkat": {
+	"id": "github/ratt-ru/solarkat",
+	"title": "github/ratt-ru/solarkat",
+	"url": " https://rseng.github.io/software/repository/github/ratt-ru/solarkat",
+	"content": "MeerKAT as a solar telescope"
 	},
-	"github/sklasfeld/DANPOS3": {
-	"id": "github/sklasfeld/DANPOS3",
-	"title": "github/sklasfeld/DANPOS3",
-	"url": " https://rseng.github.io/software/repository/github/sklasfeld/DANPOS3",
-	"content": "a toolkit for Dynamic Analysis of Nucleosome and Protein Occupancy by Sequencing."
+	"github/ratt-ru/PyMORESANE": {
+	"id": "github/ratt-ru/PyMORESANE",
+	"title": "github/ratt-ru/PyMORESANE",
+	"url": " https://rseng.github.io/software/repository/github/ratt-ru/PyMORESANE",
+	"content": "Repository for the Python version of the MORESANE deconvolution algorithm"
 	},
-	"github/adamjermyn/Skye": {
-	"id": "github/adamjermyn/Skye",
-	"title": "github/adamjermyn/Skye",
-	"url": " https://rseng.github.io/software/repository/github/adamjermyn/Skye",
-	"content": "A differentiable equation of state"
+	"github/ratt-ru/codex-africanus": {
+	"id": "github/ratt-ru/codex-africanus",
+	"title": "github/ratt-ru/codex-africanus",
+	"url": " https://rseng.github.io/software/repository/github/ratt-ru/codex-africanus",
+	"content": "Radio Astronomy Algorithms Library"
 	},
-	"github/jeetsukumaran/DendroPy": {
-	"id": "github/jeetsukumaran/DendroPy",
-	"title": "github/jeetsukumaran/DendroPy",
-	"url": " https://rseng.github.io/software/repository/github/jeetsukumaran/DendroPy",
-	"content": "A Python library for phylogenetic scripting, simulation, data processing and manipulation."
+	"github/ratt-ru/Stimela-classic": {
+	"id": "github/ratt-ru/Stimela-classic",
+	"title": "github/ratt-ru/Stimela-classic",
+	"url": " https://rseng.github.io/software/repository/github/ratt-ru/Stimela-classic",
+	"content": "Containerized radio interferometry scripting framework -- NB: Classic version is no longer in active development, use stimela 2! See README for details."
 	},
-	"github/oliveirara/polyMV": {
-	"id": "github/oliveirara/polyMV",
-	"title": "github/oliveirara/polyMV",
-	"url": " https://rseng.github.io/software/repository/github/oliveirara/polyMV",
-	"content": "Python package that converts multipolar coefficients into Multipole Vectors and Fréchet Vectors"
+	"github/ratt-ru/rodrigues": {
+	"id": "github/ratt-ru/rodrigues",
+	"title": "github/ratt-ru/rodrigues",
+	"url": " https://rseng.github.io/software/repository/github/ratt-ru/rodrigues",
+	"content": "web based radio telescope calibration simulation"
 	},
-	"github/AndreinaCastillo/Genie_manuscript_data_analysis": {
-	"id": "github/AndreinaCastillo/Genie_manuscript_data_analysis",
-	"title": "github/AndreinaCastillo/Genie_manuscript_data_analysis",
-	"url": " https://rseng.github.io/software/repository/github/AndreinaCastillo/Genie_manuscript_data_analysis",
-	"content": "Repository containing R code for the analysis of student pre- and post-recitation responses "
+	"github/ratt-ru/CubiCal": {
+	"id": "github/ratt-ru/CubiCal",
+	"title": "github/ratt-ru/CubiCal",
+	"url": " https://rseng.github.io/software/repository/github/ratt-ru/CubiCal",
+	"content": "A fast radio interferometric calibration suite."
 	},
-	"github/GenomicParisCentre/toulligQC": {
-	"id": "github/GenomicParisCentre/toulligQC",
-	"title": "github/GenomicParisCentre/toulligQC",
-	"url": " https://rseng.github.io/software/repository/github/GenomicParisCentre/toulligQC",
-	"content": "A post sequencing QC tool for Oxford Nanopore sequencers"
+	"github/ratt-ru/breizorro": {
+	"id": "github/ratt-ru/breizorro",
+	"title": "github/ratt-ru/breizorro",
+	"url": " https://rseng.github.io/software/repository/github/ratt-ru/breizorro",
+	"content": "Image masking tool(s) possibly of Breton spiritual origin"
 	},
-	"github/jfwallin/JSPAM": {
-	"id": "github/jfwallin/JSPAM",
-	"title": "github/jfwallin/JSPAM",
-	"url": " https://rseng.github.io/software/repository/github/jfwallin/JSPAM",
-	"content": "Software for simulating interacting galaxies using a restricted three-body approximation"
+	"github/ratt-ru/dask-ms": {
+	"id": "github/ratt-ru/dask-ms",
+	"title": "github/ratt-ru/dask-ms",
+	"url": " https://rseng.github.io/software/repository/github/ratt-ru/dask-ms",
+	"content": "Implementation of a dask/xarray dataset backed by a CASA MS"
 	},
-	"github/pierrepeterlongo/back_to_sequences": {
-	"id": "github/pierrepeterlongo/back_to_sequences",
-	"title": "github/pierrepeterlongo/back_to_sequences",
-	"url": " https://rseng.github.io/software/repository/github/pierrepeterlongo/back_to_sequences",
-	"content": "None"
+	"github/ratt-ru/QuartiCal": {
+	"id": "github/ratt-ru/QuartiCal",
+	"title": "github/ratt-ru/QuartiCal",
+	"url": " https://rseng.github.io/software/repository/github/ratt-ru/QuartiCal",
+	"content": "CubiCal, but with greater power."
 	},
-	"github/jan-orkisz/colume": {
-	"id": "github/jan-orkisz/colume",
-	"title": "github/jan-orkisz/colume",
-	"url": " https://rseng.github.io/software/repository/github/jan-orkisz/colume",
-	"content": "Estimating volume density of dense insterstellar clouds based on column density maps."
+	"github/ratt-ru/smops": {
+	"id": "github/ratt-ru/smops",
+	"title": "github/ratt-ru/smops",
+	"url": " https://rseng.github.io/software/repository/github/ratt-ru/smops",
+	"content": "Interpolate FITS model images over higher frequency intervals"
 	},
-	"github/carpenterphysics/DarkFlux": {
-	"id": "github/carpenterphysics/DarkFlux",
-	"title": "github/carpenterphysics/DarkFlux",
-	"url": " https://rseng.github.io/software/repository/github/carpenterphysics/DarkFlux",
-	"content": "DarkFlux is a tool to compute Dark Matter the Dark Matter annihilation spectrum in Next Generation Dark Matter Models"
+	"github/ratt-ru/Stimela": {
+	"id": "github/ratt-ru/Stimela",
+	"title": "github/ratt-ru/Stimela",
+	"url": " https://rseng.github.io/software/repository/github/ratt-ru/Stimela",
+	"content": "A containerized radio interferometry scripting framework"
 	},
-	"github/percolator/percolator": {
-	"id": "github/percolator/percolator",
-	"title": "github/percolator/percolator",
-	"url": " https://rseng.github.io/software/repository/github/percolator/percolator",
-	"content": "Semi-supervised learning for peptide identification from shotgun proteomics datasets "
+	"github/ratt-ru/eidos": {
+	"id": "github/ratt-ru/eidos",
+	"title": "github/ratt-ru/eidos",
+	"url": " https://rseng.github.io/software/repository/github/ratt-ru/eidos",
+	"content": "Modelling primary beams of radio astronomy antennas"
 	},
-	"github/dcouvin/CRISPRCasFinder": {
-	"id": "github/dcouvin/CRISPRCasFinder",
-	"title": "github/dcouvin/CRISPRCasFinder",
-	"url": " https://rseng.github.io/software/repository/github/dcouvin/CRISPRCasFinder",
-	"content": "A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences"
+	"github/mrilikecoding/StreamPoseML": {
+	"id": "github/mrilikecoding/StreamPoseML",
+	"title": "github/mrilikecoding/StreamPoseML",
+	"url": " https://rseng.github.io/software/repository/github/mrilikecoding/StreamPoseML",
+	"content": "pose estimation / ML model wrapper and annotation utility"
 	},
-	"github/healytwin1/HISS": {
-	"id": "github/healytwin1/HISS",
-	"title": "github/healytwin1/HISS",
-	"url": " https://rseng.github.io/software/repository/github/healytwin1/HISS",
-	"content": "HI Stacking Software"
+	"github/NeamulKabir/EnsembleFam": {
+	"id": "github/NeamulKabir/EnsembleFam",
+	"title": "github/NeamulKabir/EnsembleFam",
+	"url": " https://rseng.github.io/software/repository/github/NeamulKabir/EnsembleFam",
+	"content": "EnsembleFam: Towards a more accurate protein function prediction in twilight zone"
 	},
-	"github/ThomasEdwardRiley/xpsi-pre-transfer": {
-	"id": "github/ThomasEdwardRiley/xpsi-pre-transfer",
-	"title": "github/ThomasEdwardRiley/xpsi-pre-transfer",
-	"url": " https://rseng.github.io/software/repository/github/ThomasEdwardRiley/xpsi-pre-transfer",
-	"content": "X-PSI: X-ray Pulse Simulation and Inference"
+	"github/Computational-NeuroGenetics/deMeta-beta": {
+	"id": "github/Computational-NeuroGenetics/deMeta-beta",
+	"title": "github/Computational-NeuroGenetics/deMeta-beta",
+	"url": " https://rseng.github.io/software/repository/github/Computational-NeuroGenetics/deMeta-beta",
+	"content": "None"
 	},
-	"github/newcleo-dev-team/lbh15": {
-	"id": "github/newcleo-dev-team/lbh15",
-	"title": "github/newcleo-dev-team/lbh15",
-	"url": " https://rseng.github.io/software/repository/github/newcleo-dev-team/lbh15",
-	"content": "Compilation of thermo-physical properties for lead/bismuth-based liquid metals for fast reactor technology"
+	"github/ouyang-lab/PRAS": {
+	"id": "github/ouyang-lab/PRAS",
+	"title": "github/ouyang-lab/PRAS",
+	"url": " https://rseng.github.io/software/repository/github/ouyang-lab/PRAS",
+	"content": "PRAS: predicting functional targets of RNA binding proteins based on CLIP-seq peaks"
 	},
-	"github/ntlucia/BrownDwarf-SpectralIndices": {
-	"id": "github/ntlucia/BrownDwarf-SpectralIndices",
-	"title": "github/ntlucia/BrownDwarf-SpectralIndices",
-	"url": " https://rseng.github.io/software/repository/github/ntlucia/BrownDwarf-SpectralIndices",
-	"content": "Method to determine if a brown dwarf is a candidate to be a photometric variable or not, by means of the study of spectral indices."
+	"github/DrJieZheng/meanoffset": {
+	"id": "github/DrJieZheng/meanoffset",
+	"title": "github/DrJieZheng/meanoffset",
+	"url": " https://rseng.github.io/software/repository/github/DrJieZheng/meanoffset",
+	"content": "None"
 	},
-	"github/IKNL/vantage6": {
-	"id": "github/IKNL/vantage6",
-	"title": "github/IKNL/vantage6",
-	"url": " https://rseng.github.io/software/repository/github/IKNL/vantage6",
-	"content": "Docker CLI package for the vantage6 infrastructure"
+	"github/sbi-dev/sbi": {
+	"id": "github/sbi-dev/sbi",
+	"title": "github/sbi-dev/sbi",
+	"url": " https://rseng.github.io/software/repository/github/sbi-dev/sbi",
+	"content": "Simulation-based inference toolkit"
 	},
-	"github/cogent3/cogent3": {
-	"id": "github/cogent3/cogent3",
-	"title": "github/cogent3/cogent3",
-	"url": " https://rseng.github.io/software/repository/github/cogent3/cogent3",
-	"content": "Comparative Genomics Toolkit 3"
+	"github/MMV-Lab/mmv_im2im": {
+	"id": "github/MMV-Lab/mmv_im2im",
+	"title": "github/MMV-Lab/mmv_im2im",
+	"url": " https://rseng.github.io/software/repository/github/MMV-Lab/mmv_im2im",
+	"content": "Python package for deep learning based image to image transformation"
 	},
-	"github/mjoppich/bioGUItools": {
-	"id": "github/mjoppich/bioGUItools",
-	"title": "github/mjoppich/bioGUItools",
-	"url": " https://rseng.github.io/software/repository/github/mjoppich/bioGUItools",
-	"content": "Tools for bioGUI (e.g. CWL Parser/argparse2biogui/...)"
+	"github/sauddy/GRINN": {
+	"id": "github/sauddy/GRINN",
+	"title": "github/sauddy/GRINN",
+	"url": " https://rseng.github.io/software/repository/github/sauddy/GRINN",
+	"content": "We solve hydrodynamical equation including self-gravitating using Physics Informed Neural Networks. We study Jeans instability in self-gravitating gas in star forming molecular clouds"
 	},
-	"github/nbisweden/MrBayes": {
-	"id": "github/nbisweden/MrBayes",
-	"title": "github/nbisweden/MrBayes",
-	"url": " https://rseng.github.io/software/repository/github/nbisweden/MrBayes",
-	"content": "MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:"
+	"github/yhoogstrate/fastafs": {
+	"id": "github/yhoogstrate/fastafs",
+	"title": "github/yhoogstrate/fastafs",
+	"url": " https://rseng.github.io/software/repository/github/yhoogstrate/fastafs",
+	"content": "toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT &amp; TWOBIT files"
 	},
-	"github/backyardworlds/wiseview": {
-	"id": "github/backyardworlds/wiseview",
-	"title": "github/backyardworlds/wiseview",
-	"url": " https://rseng.github.io/software/repository/github/backyardworlds/wiseview",
-	"content": "WiseView: Visualizing Motion and Variability of Faint WISE Sources"
+	"github/astro-friedel/CADRE": {
+	"id": "github/astro-friedel/CADRE",
+	"title": "github/astro-friedel/CADRE",
+	"url": " https://rseng.github.io/software/repository/github/astro-friedel/CADRE",
+	"content": "CARMA Data Reduction Pipeline"
 	},
-	"github/bioturing/hera": {
-	"id": "github/bioturing/hera",
-	"title": "github/bioturing/hera",
-	"url": " https://rseng.github.io/software/repository/github/bioturing/hera",
-	"content": "a bioinformatics tool that helps analyze RNA-seq data, providing base-to-base alignment BAM files, transcript abundance estimation, and fusion gene detection."
+	"github/donaldRwilliams/BGGM": {
+	"id": "github/donaldRwilliams/BGGM",
+	"title": "github/donaldRwilliams/BGGM",
+	"url": " https://rseng.github.io/software/repository/github/donaldRwilliams/BGGM",
+	"content": "Bayesian Gaussian Graphical Models"
 	},
-	"github/esoPanda/FTbg": {
-	"id": "github/esoPanda/FTbg",
-	"title": "github/esoPanda/FTbg",
-	"url": " https://rseng.github.io/software/repository/github/esoPanda/FTbg",
-	"content": "Background removal using Fourier Transform"
+	"github/donaldRwilliams/GGMnonreg": {
+	"id": "github/donaldRwilliams/GGMnonreg",
+	"title": "github/donaldRwilliams/GGMnonreg",
+	"url": " https://rseng.github.io/software/repository/github/donaldRwilliams/GGMnonreg",
+	"content": "None"
 	},
-	"github/asmusskar/ALVA": {
-	"id": "github/asmusskar/ALVA",
-	"title": "github/asmusskar/ALVA",
-	"url": " https://rseng.github.io/software/repository/github/asmusskar/ALVA",
-	"content": "ALVA is a MATLAB-package for advanced pavement modeling that is highly adaptive"
+	"github/athob/py-ananke": {
+	"id": "github/athob/py-ananke",
+	"title": "github/athob/py-ananke",
+	"url": " https://rseng.github.io/software/repository/github/athob/py-ananke",
+	"content": "Python pipeline to generate mock astrometric and photometric catalogs of synthetic stars derived from particle-based simulated star populations"
 	},
-	"github/indraniel/fqgrep": {
-	"id": "github/indraniel/fqgrep",
-	"title": "github/indraniel/fqgrep",
-	"url": " https://rseng.github.io/software/repository/github/indraniel/fqgrep",
-	"content": "An approximate sequence pattern matcher for FASTQ/FASTA files."
+	"github/WilliamLwj/PyXAB": {
+	"id": "github/WilliamLwj/PyXAB",
+	"title": "github/WilliamLwj/PyXAB",
+	"url": " https://rseng.github.io/software/repository/github/WilliamLwj/PyXAB",
+	"content": "PyXAB - A Python Library for X-Armed Bandit and Online Blackbox Optimization Algorithms"
 	},
-	"github/Aarhus-Psychiatry-Research/timeseriesflattener": {
-	"id": "github/Aarhus-Psychiatry-Research/timeseriesflattener",
-	"title": "github/Aarhus-Psychiatry-Research/timeseriesflattener",
-	"url": " https://rseng.github.io/software/repository/github/Aarhus-Psychiatry-Research/timeseriesflattener",
-	"content": "A package for converting irregularly spaced time series, such as eletronic health records, into statically shaped dataframes. "
+	"github/emrecdem/emo-spectre": {
+	"id": "github/emrecdem/emo-spectre",
+	"title": "github/emrecdem/emo-spectre",
+	"url": " https://rseng.github.io/software/repository/github/emrecdem/emo-spectre",
+	"content": "None"
 	},
-	"github/fair-software/howfairis": {
-	"id": "github/fair-software/howfairis",
-	"title": "github/fair-software/howfairis",
-	"url": " https://rseng.github.io/software/repository/github/fair-software/howfairis",
-	"content": "Command line tool to analyze a GitHub or GitLab repository&#39;s compliance with the fair-software.eu recommendations"
+	"github/sebhoof/SolarAxionFlux": {
+	"id": "github/sebhoof/SolarAxionFlux",
+	"title": "github/sebhoof/SolarAxionFlux",
+	"url": " https://rseng.github.io/software/repository/github/sebhoof/SolarAxionFlux",
+	"content": "A C++/Python library for calculating the solar axion flux for different solar models and opacity codes."
 	},
-	"github/fair-software/fairtally": {
-	"id": "github/fair-software/fairtally",
-	"title": "github/fair-software/fairtally",
-	"url": " https://rseng.github.io/software/repository/github/fair-software/fairtally",
-	"content": "Make a report based on howfairis results"
+	"github/ArnaudCassan/microlensing": {
+	"id": "github/ArnaudCassan/microlensing",
+	"title": "github/ArnaudCassan/microlensing",
+	"url": " https://rseng.github.io/software/repository/github/ArnaudCassan/microlensing",
+	"content": "Gravitational microlensing"
 	},
-	"github/miracum/ahd2fhir": {
-	"id": "github/miracum/ahd2fhir",
-	"title": "github/miracum/ahd2fhir",
-	"url": " https://rseng.github.io/software/repository/github/miracum/ahd2fhir",
-	"content": "A REST service for mapping text analysis results from Averbis Health Discovery to FHIR resources."
+	"github/fitbenchmarking/fitbenchmarking": {
+	"id": "github/fitbenchmarking/fitbenchmarking",
+	"title": "github/fitbenchmarking/fitbenchmarking",
+	"url": " https://rseng.github.io/software/repository/github/fitbenchmarking/fitbenchmarking",
+	"content": "Tool for comparing the run time and accuracy of minimizers on fit benchmarking problems"
 	},
-	"github/opencobra/cobrapy": {
-	"id": "github/opencobra/cobrapy",
-	"title": "github/opencobra/cobrapy",
-	"url": " https://rseng.github.io/software/repository/github/opencobra/cobrapy",
-	"content": "COBRApy is a package for constraint-based modeling of metabolic networks."
+	"github/exoplanet-dev/exoplanet": {
+	"id": "github/exoplanet-dev/exoplanet",
+	"title": "github/exoplanet-dev/exoplanet",
+	"url": " https://rseng.github.io/software/repository/github/exoplanet-dev/exoplanet",
+	"content": "Fast &amp; scalable MCMC for all your exoplanet needs! "
 	},
-	"github/tumcms/Open-Infra-Platform": {
-	"id": "github/tumcms/Open-Infra-Platform",
-	"title": "github/tumcms/Open-Infra-Platform",
-	"url": " https://rseng.github.io/software/repository/github/tumcms/Open-Infra-Platform",
-	"content": "This is the official repository of the open-source Open Infra Platform software (as of April 2020)."
+	"github/exoplanet-dev/celerite2": {
+	"id": "github/exoplanet-dev/celerite2",
+	"title": "github/exoplanet-dev/celerite2",
+	"url": " https://rseng.github.io/software/repository/github/exoplanet-dev/celerite2",
+	"content": "Fast &amp; scalable Gaussian Processes in one dimension"
 	},
-	"github/EpistasisLab/regens": {
-	"id": "github/EpistasisLab/regens",
-	"title": "github/EpistasisLab/regens",
-	"url": " https://rseng.github.io/software/repository/github/EpistasisLab/regens",
-	"content": "Recombines real genomic segments to simulate whole genomes"
+	"github/alixlam/fmristroke": {
+	"id": "github/alixlam/fmristroke",
+	"title": "github/alixlam/fmristroke",
+	"url": " https://rseng.github.io/software/repository/github/alixlam/fmristroke",
+	"content": "Adding quality checks and confounds computation steps to fmriprep for stroke data."
 	},
-	"github/EpistasisLab/tpot": {
-	"id": "github/EpistasisLab/tpot",
-	"title": "github/EpistasisLab/tpot",
-	"url": " https://rseng.github.io/software/repository/github/EpistasisLab/tpot",
-	"content": "A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming."
+	"github/tldr-group/taufactor": {
+	"id": "github/tldr-group/taufactor",
+	"title": "github/tldr-group/taufactor",
+	"url": " https://rseng.github.io/software/repository/github/tldr-group/taufactor",
+	"content": "TauFactor is a parallelised solver for calculating tortuosity factors from voxel data."
 	},
-	"github/SkywalkerLuke/TransHLA": {
-	"id": "github/SkywalkerLuke/TransHLA",
-	"title": "github/SkywalkerLuke/TransHLA",
-	"url": " https://rseng.github.io/software/repository/github/SkywalkerLuke/TransHLA",
-	"content": "TransHLA: A hybrid transformer model for peptide-HLA epitope detection."
+	"github/tldr-group/samba-web": {
+	"id": "github/tldr-group/samba-web",
+	"title": "github/tldr-group/samba-web",
+	"url": " https://rseng.github.io/software/repository/github/tldr-group/samba-web",
+	"content": "Local version of samba-web, a trainable segmentation web app with deep learning powered labelling"
 	},
-	"github/dfki-ric-underactuated-lab/torque_limited_simple_pendulum": {
-	"id": "github/dfki-ric-underactuated-lab/torque_limited_simple_pendulum",
-	"title": "github/dfki-ric-underactuated-lab/torque_limited_simple_pendulum",
-	"url": " https://rseng.github.io/software/repository/github/dfki-ric-underactuated-lab/torque_limited_simple_pendulum",
-	"content": "Torque Limited Simple Pendulum Underactuated System"
+	"github/ramadatta/CPgeneProfiler": {
+	"id": "github/ramadatta/CPgeneProfiler",
+	"title": "github/ramadatta/CPgeneProfiler",
+	"url": " https://rseng.github.io/software/repository/github/ramadatta/CPgeneProfiler",
+	"content": "CPgeneProfiler R package repository"
 	},
-	"github/Orin-beep/PlasGO": {
-	"id": "github/Orin-beep/PlasGO",
-	"title": "github/Orin-beep/PlasGO",
-	"url": " https://rseng.github.io/software/repository/github/Orin-beep/PlasGO",
-	"content": "None"
+	"github/aewallin/allantools": {
+	"id": "github/aewallin/allantools",
+	"title": "github/aewallin/allantools",
+	"url": " https://rseng.github.io/software/repository/github/aewallin/allantools",
+	"content": "Allan deviation and related time &amp; frequency statistics library in Python"
 	},
-	"github/rajeshmondal18/N-body": {
-	"id": "github/rajeshmondal18/N-body",
-	"title": "github/rajeshmondal18/N-body",
-	"url": " https://rseng.github.io/software/repository/github/rajeshmondal18/N-body",
-	"content": "A code to compute the non-linear evolution of the cosmological matter density contrast."
+	"github/coder/code-server": {
+	"id": "github/coder/code-server",
+	"title": "github/coder/code-server",
+	"url": " https://rseng.github.io/software/repository/github/coder/code-server",
+	"content": "VS Code in the browser"
 	},
-	"github/rajeshmondal18/ReionYuga": {
-	"id": "github/rajeshmondal18/ReionYuga",
-	"title": "github/rajeshmondal18/ReionYuga",
-	"url": " https://rseng.github.io/software/repository/github/rajeshmondal18/ReionYuga",
-	"content": "A semi-numerical code to generate the Epoch of Reionization (EoR) neutral Hydrogen (HI) field."
+	"github/ComputationalPhysiology/simcardems": {
+	"id": "github/ComputationalPhysiology/simcardems",
+	"title": "github/ComputationalPhysiology/simcardems",
+	"url": " https://rseng.github.io/software/repository/github/ComputationalPhysiology/simcardems",
+	"content": "Simula Cardiac ElectroMechanics Solver"
 	},
-	"github/rajeshmondal18/FoF-Halo-finder": {
-	"id": "github/rajeshmondal18/FoF-Halo-finder",
-	"title": "github/rajeshmondal18/FoF-Halo-finder",
-	"url": " https://rseng.github.io/software/repository/github/rajeshmondal18/FoF-Halo-finder",
-	"content": "A code to identify the location and size of the gravitationally collapsed dark matter halos."
+	"github/dftd3/simple-dftd3": {
+	"id": "github/dftd3/simple-dftd3",
+	"title": "github/dftd3/simple-dftd3",
+	"url": " https://rseng.github.io/software/repository/github/dftd3/simple-dftd3",
+	"content": "Library first implementation of the D3 dispersion correction"
 	},
-	"github/rajeshmondal18/MAPS": {
-	"id": "github/rajeshmondal18/MAPS",
-	"title": "github/rajeshmondal18/MAPS",
-	"url": " https://rseng.github.io/software/repository/github/rajeshmondal18/MAPS",
-	"content": "The Multi-frequency Angular Power Spectrum (MAPS) estimator"
+	"github/idaholab/moose": {
+	"id": "github/idaholab/moose",
+	"title": "github/idaholab/moose",
+	"url": " https://rseng.github.io/software/repository/github/idaholab/moose",
+	"content": "Multiphysics Object Oriented Simulation Environment"
 	},
-	"github/rajeshmondal18/DviSukta": {
-	"id": "github/rajeshmondal18/DviSukta",
-	"title": "github/rajeshmondal18/DviSukta",
-	"url": " https://rseng.github.io/software/repository/github/rajeshmondal18/DviSukta",
-	"content": "A direct estimator of the bispectrum"
+	"github/combine-lab/salmon": {
+	"id": "github/combine-lab/salmon",
+	"title": "github/combine-lab/salmon",
+	"url": " https://rseng.github.io/software/repository/github/combine-lab/salmon",
+	"content": "🐟 🍣 🍱 Highly-accurate &amp; wicked fast transcript-level quantification from RNA-seq reads using selective alignment"
 	},
-	"github/maho3/ltu-ili": {
-	"id": "github/maho3/ltu-ili",
-	"title": "github/maho3/ltu-ili",
-	"url": " https://rseng.github.io/software/repository/github/maho3/ltu-ili",
-	"content": "Robust ML in Astro"
+	"github/NLESC-JCER/QMCblip": {
+	"id": "github/NLESC-JCER/QMCblip",
+	"title": "github/NLESC-JCER/QMCblip",
+	"url": " https://rseng.github.io/software/repository/github/NLESC-JCER/QMCblip",
+	"content": "None"
 	},
-	"github/sPaMFouR/RedPipe": {
-	"id": "github/sPaMFouR/RedPipe",
-	"title": "github/sPaMFouR/RedPipe",
-	"url": " https://rseng.github.io/software/repository/github/sPaMFouR/RedPipe",
-	"content": "Python Scripts for Data Reduction and Analysis"
+	"github/NLESC-JCER/Fortran_Davidson": {
+	"id": "github/NLESC-JCER/Fortran_Davidson",
+	"title": "github/NLESC-JCER/Fortran_Davidson",
+	"url": " https://rseng.github.io/software/repository/github/NLESC-JCER/Fortran_Davidson",
+	"content": "Davidson eigensolver implemented in Fortran"
 	},
-	"github/YihePang/DisoFLAG": {
-	"id": "github/YihePang/DisoFLAG",
-	"title": "github/YihePang/DisoFLAG",
-	"url": " https://rseng.github.io/software/repository/github/YihePang/DisoFLAG",
-	"content": "Accurate prediction of protein intrinsic disorder and its functions using graph-based interaction protein language model"
+	"github/NLESC-JCER/QMCTorch": {
+	"id": "github/NLESC-JCER/QMCTorch",
+	"title": "github/NLESC-JCER/QMCTorch",
+	"url": " https://rseng.github.io/software/repository/github/NLESC-JCER/QMCTorch",
+	"content": "Pytorch Implementation of Real Space Quantum Monte Carlo Simulations of Molecular Systems"
 	},
-	"github/PEJpOhno/SMiPoly": {
-	"id": "github/PEJpOhno/SMiPoly",
-	"title": "github/PEJpOhno/SMiPoly",
-	"url": " https://rseng.github.io/software/repository/github/PEJpOhno/SMiPoly",
-	"content": "rule-based virtual polymer library generator"
+	"github/NLESC-JCER/EigenCuda": {
+	"id": "github/NLESC-JCER/EigenCuda",
+	"title": "github/NLESC-JCER/EigenCuda",
+	"url": " https://rseng.github.io/software/repository/github/NLESC-JCER/EigenCuda",
+	"content": "Offload Eigen operations to GPUs"
 	},
-	"github/CSi-Studio/G-Aligner": {
-	"id": "github/CSi-Studio/G-Aligner",
-	"title": "github/CSi-Studio/G-Aligner",
-	"url": " https://rseng.github.io/software/repository/github/CSi-Studio/G-Aligner",
-	"content": "G-Aligner: a graph-based feature alignment method for untargeted LC-MS-based metabolomics"
+	"github/sarrvesh/cuFFS": {
+	"id": "github/sarrvesh/cuFFS",
+	"title": "github/sarrvesh/cuFFS",
+	"url": " https://rseng.github.io/software/repository/github/sarrvesh/cuFFS",
+	"content": "A GPU-accelerated Rotation Measure Synthesis code"
 	},
-	"github/SAMI-Galaxy-Survey/sami": {
-	"id": "github/SAMI-Galaxy-Survey/sami",
-	"title": "github/SAMI-Galaxy-Survey/sami",
-	"url": " https://rseng.github.io/software/repository/github/SAMI-Galaxy-Survey/sami",
-	"content": "Data reduction pipeline for the SAMI instrument"
+	"github/TheJacksonLaboratory/drug-synergy": {
+	"id": "github/TheJacksonLaboratory/drug-synergy",
+	"title": "github/TheJacksonLaboratory/drug-synergy",
+	"url": " https://rseng.github.io/software/repository/github/TheJacksonLaboratory/drug-synergy",
+	"content": "Drug synergy prediction tool"
 	},
-	"github/nickhand/pyRSD": {
-	"id": "github/nickhand/pyRSD",
-	"title": "github/nickhand/pyRSD",
-	"url": " https://rseng.github.io/software/repository/github/nickhand/pyRSD",
-	"content": "Accurate predictions for the clustering of galaxies in redshift-space in Python"
+	"github/TheJacksonLaboratory/SvAnn": {
+	"id": "github/TheJacksonLaboratory/SvAnn",
+	"title": "github/TheJacksonLaboratory/SvAnn",
+	"url": " https://rseng.github.io/software/repository/github/TheJacksonLaboratory/SvAnn",
+	"content": "Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing"
 	},
-	"github/casaluca/bolometric-corrections": {
-	"id": "github/casaluca/bolometric-corrections",
-	"title": "github/casaluca/bolometric-corrections",
-	"url": " https://rseng.github.io/software/repository/github/casaluca/bolometric-corrections",
-	"content": "compute bolometric corrections and synthetic colours for input values of stellar parameters"
+	"github/bow/crimson": {
+	"id": "github/bow/crimson",
+	"title": "github/bow/crimson",
+	"url": " https://rseng.github.io/software/repository/github/bow/crimson",
+	"content": "Bioinformatics tool outputs converter to JSON or YAML"
 	},
-	"github/PlanetHunters/tkmatrix": {
-	"id": "github/PlanetHunters/tkmatrix",
-	"title": "github/PlanetHunters/tkmatrix",
-	"url": " https://rseng.github.io/software/repository/github/PlanetHunters/tkmatrix",
-	"content": "Transits Inject and Recovery Multi-phase Analysis"
+	"github/bow/fsnviz": {
+	"id": "github/bow/fsnviz",
+	"title": "github/bow/fsnviz",
+	"url": " https://rseng.github.io/software/repository/github/bow/fsnviz",
+	"content": "Tool for plotting gene fusion events using Circos."
 	},
-	"github/annehutter/polyspectrum": {
-	"id": "github/annehutter/polyspectrum",
-	"title": "github/annehutter/polyspectrum",
-	"url": " https://rseng.github.io/software/repository/github/annehutter/polyspectrum",
-	"content": "MPI-parallelised code to compute polyspectrum (including bispectrum) from a 3D grid"
+	"github/torognes/vsearch": {
+	"id": "github/torognes/vsearch",
+	"title": "github/torognes/vsearch",
+	"url": " https://rseng.github.io/software/repository/github/torognes/vsearch",
+	"content": "Versatile open-source tool for microbiome analysis"
 	},
-	"github/annehutter/grid-model": {
-	"id": "github/annehutter/grid-model",
-	"title": "github/annehutter/grid-model",
-	"url": " https://rseng.github.io/software/repository/github/annehutter/grid-model",
-	"content": "Code to compute ionization field from density fields and source catalogue (CIFOG)"
+	"github/torognes/swarm": {
+	"id": "github/torognes/swarm",
+	"title": "github/torognes/swarm",
+	"url": " https://rseng.github.io/software/repository/github/torognes/swarm",
+	"content": "A robust and fast clustering method for amplicon-based studies"
 	},
-	"github/annehutter/astraeus": {
-	"id": "github/annehutter/astraeus",
-	"title": "github/annehutter/astraeus",
-	"url": " https://rseng.github.io/software/repository/github/annehutter/astraeus",
-	"content": "Home of the semi-analytical / semi-numerical galaxy evolution and reionization code ASTRAEUS"
+	"github/moscibrodzka/ipole": {
+	"id": "github/moscibrodzka/ipole",
+	"title": "github/moscibrodzka/ipole",
+	"url": " https://rseng.github.io/software/repository/github/moscibrodzka/ipole",
+	"content": "ipole (master, originally published), ipole-v2.0 (v2.0 is more compact with additional features). This is the original repository for the ipole code. "
 	},
-	"github/BjoernBiltzinger/pyspi": {
-	"id": "github/BjoernBiltzinger/pyspi",
-	"title": "github/BjoernBiltzinger/pyspi",
-	"url": " https://rseng.github.io/software/repository/github/BjoernBiltzinger/pyspi",
-	"content": "Pure python tools for interfacing with INTEGRAL SPI data. It also provides a 3ML plugin for performing full forward folding spectral analysis of GRBs. The documentation with a few examples is available at https://pyspi.readthedocs.io/."
+	"github/niosh-mining/obsplus": {
+	"id": "github/niosh-mining/obsplus",
+	"title": "github/niosh-mining/obsplus",
+	"url": " https://rseng.github.io/software/repository/github/niosh-mining/obsplus",
+	"content": "A Pandas-Centric ObsPy Expansion Pack"
+	},
+	"github/antonpannekoek/sunbather": {
+	"id": "github/antonpannekoek/sunbather",
+	"title": "github/antonpannekoek/sunbather",
+	"url": " https://rseng.github.io/software/repository/github/antonpannekoek/sunbather",
+	"content": "Python/Cloudy package for simulating escaping exoplanet atmospheres and their transit spectra."
 	},
-	"github/hsinnan75/MapCaller": {
-	"id": "github/hsinnan75/MapCaller",
-	"title": "github/hsinnan75/MapCaller",
-	"url": " https://rseng.github.io/software/repository/github/hsinnan75/MapCaller",
-	"content": "MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes"
+	"github/HoBeZwe/SphericalScattering.jl": {
+	"id": "github/HoBeZwe/SphericalScattering.jl",
+	"title": "github/HoBeZwe/SphericalScattering.jl",
+	"url": " https://rseng.github.io/software/repository/github/HoBeZwe/SphericalScattering.jl",
+	"content": "This package provides semi-analytical solutions to the scattering of time harmonic and static electromagnetic fields from spherical objects."
 	},
-	"github/hsinnan75/GSAlign": {
-	"id": "github/hsinnan75/GSAlign",
-	"title": "github/hsinnan75/GSAlign",
-	"url": " https://rseng.github.io/software/repository/github/hsinnan75/GSAlign",
-	"content": "GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison"
+	"github/tatekawa-astron/3LPT-init": {
+	"id": "github/tatekawa-astron/3LPT-init",
+	"title": "github/tatekawa-astron/3LPT-init",
+	"url": " https://rseng.github.io/software/repository/github/tatekawa-astron/3LPT-init",
+	"content": "None"
 	},
-	"github/sid-krish/Rhometa_Full_Genome": {
-	"id": "github/sid-krish/Rhometa_Full_Genome",
-	"title": "github/sid-krish/Rhometa_Full_Genome",
-	"url": " https://rseng.github.io/software/repository/github/sid-krish/Rhometa_Full_Genome",
+	"github/tatekawa-astron/PN": {
+	"id": "github/tatekawa-astron/PN",
+	"title": "github/tatekawa-astron/PN",
+	"url": " https://rseng.github.io/software/repository/github/tatekawa-astron/PN",
 	"content": "None"
 	},
-	"github/samirmartins/pydaq": {
-	"id": "github/samirmartins/pydaq",
-	"title": "github/samirmartins/pydaq",
-	"url": " https://rseng.github.io/software/repository/github/samirmartins/pydaq",
-	"content": "Data Acquisition and Experimental Analysis with Python and Graphical User Interface"
+	"github/cobilab/altair": {
+	"id": "github/cobilab/altair",
+	"title": "github/cobilab/altair",
+	"url": " https://rseng.github.io/software/repository/github/cobilab/altair",
+	"content": "AltaiR: a C toolkit for alignment-free and spatial-temporal analysis of multi-FASTA data"
 	},
-	"github/nedRad88/SCALAR": {
-	"id": "github/nedRad88/SCALAR",
-	"title": "github/nedRad88/SCALAR",
-	"url": " https://rseng.github.io/software/repository/github/nedRad88/SCALAR",
-	"content": "SCALAR - Streaming ChALlenge plAtfoRm"
+	"github/cobilab/RFSC": {
+	"id": "github/cobilab/RFSC",
+	"title": "github/cobilab/RFSC",
+	"url": " https://rseng.github.io/software/repository/github/cobilab/RFSC",
+	"content": "Reference-Free Sequence Classification Tool for DNA sequences in metagenomic samples"
 	},
-	"github/gwpy/gwpy": {
-	"id": "github/gwpy/gwpy",
-	"title": "github/gwpy/gwpy",
-	"url": " https://rseng.github.io/software/repository/github/gwpy/gwpy",
-	"content": "Package for analysing and characterising gravitational wave data in python"
+	"github/henry2004y/Vlasiator.jl": {
+	"id": "github/henry2004y/Vlasiator.jl",
+	"title": "github/henry2004y/Vlasiator.jl",
+	"url": " https://rseng.github.io/software/repository/github/henry2004y/Vlasiator.jl",
+	"content": "Data processor for Vlasiator"
 	},
-	"github/mjuvela/ISM": {
-	"id": "github/mjuvela/ISM",
-	"title": "github/mjuvela/ISM",
-	"url": " https://rseng.github.io/software/repository/github/mjuvela/ISM",
-	"content": "Various programs related to interstellar medium (ISM) studies"
+	"github/tud-hri/joan": {
+	"id": "github/tud-hri/joan",
+	"title": "github/tud-hri/joan",
+	"url": " https://rseng.github.io/software/repository/github/tud-hri/joan",
+	"content": "JOAN is an software package that allows to perform human-in-the loop experiments in the open source driving simulator CARLA. JOAN facilitates communication between human input devices and CARLA, the implementation of haptic feedback, systematically storing experiment data, and the automatic execution of experiments with multiple experimental conditions."
 	},
-	"github/ConnorStoneAstro/AutoProf": {
-	"id": "github/ConnorStoneAstro/AutoProf",
-	"title": "github/ConnorStoneAstro/AutoProf",
-	"url": " https://rseng.github.io/software/repository/github/ConnorStoneAstro/AutoProf",
-	"content": "Automatic Isophotal solutions for galaxy images"
+	"github/tud-hri/travia": {
+	"id": "github/tud-hri/travia",
+	"title": "github/tud-hri/travia",
+	"url": " https://rseng.github.io/software/repository/github/tud-hri/travia",
+	"content": "a Traffic data Visualization and Annotation tool"
 	},
-	"github/nkhorshid/simab": {
-	"id": "github/nkhorshid/simab",
-	"title": "github/nkhorshid/simab",
-	"url": " https://rseng.github.io/software/repository/github/nkhorshid/simab",
-	"content": "Planet formation model"
+	"github/aberer/RogueNaRok": {
+	"id": "github/aberer/RogueNaRok",
+	"title": "github/aberer/RogueNaRok",
+	"url": " https://rseng.github.io/software/repository/github/aberer/RogueNaRok",
+	"content": "A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf stability index and taxonomic instability index"
 	},
-	"github/BorgwardtLab/simbsig": {
-	"id": "github/BorgwardtLab/simbsig",
-	"title": "github/BorgwardtLab/simbsig",
-	"url": " https://rseng.github.io/software/repository/github/BorgwardtLab/simbsig",
-	"content": "The official implementation for the SIMBSIG package"
+	"github/thejackal360/OpenPelt-Public": {
+	"id": "github/thejackal360/OpenPelt-Public",
+	"title": "github/thejackal360/OpenPelt-Public",
+	"url": " https://rseng.github.io/software/repository/github/thejackal360/OpenPelt-Public",
+	"content": "None"
 	},
-	"github/faircloth-lab/phyluce": {
-	"id": "github/faircloth-lab/phyluce",
-	"title": "github/faircloth-lab/phyluce",
-	"url": " https://rseng.github.io/software/repository/github/faircloth-lab/phyluce",
-	"content": "software for UCE (and general) phylogenomics"
+	"github/cajohare/NeutrinoFog": {
+	"id": "github/cajohare/NeutrinoFog",
+	"title": "github/cajohare/NeutrinoFog",
+	"url": " https://rseng.github.io/software/repository/github/cajohare/NeutrinoFog",
+	"content": "Neutrino fog and floor for direct dark matter searches"
 	},
-	"github/dcjones/quip": {
-	"id": "github/dcjones/quip",
-	"title": "github/dcjones/quip",
-	"url": " https://rseng.github.io/software/repository/github/dcjones/quip",
-	"content": "Compressing next-generation sequencing data with extreme prejudice."
+	"github/jlustigy/coronagraph": {
+	"id": "github/jlustigy/coronagraph",
+	"title": "github/jlustigy/coronagraph",
+	"url": " https://rseng.github.io/software/repository/github/jlustigy/coronagraph",
+	"content": "A Python noise model for directly imaging exoplanets "
 	},
-	"github/gotsunami/Youpi": {
-	"id": "github/gotsunami/Youpi",
-	"title": "github/gotsunami/Youpi",
-	"url": " https://rseng.github.io/software/repository/github/gotsunami/Youpi",
-	"content": "A web application providing high level functionalities to perform data reduction on scientific FITS images."
+	"github/DSIMB/medusa": {
+	"id": "github/DSIMB/medusa",
+	"title": "github/DSIMB/medusa",
+	"url": " https://rseng.github.io/software/repository/github/DSIMB/medusa",
+	"content": "A Deep Learning based protein flexibility prediction tool."
 	},
-	"github/christiangil/StellarSpectraObservationFitting.jl": {
-	"id": "github/christiangil/StellarSpectraObservationFitting.jl",
-	"title": "github/christiangil/StellarSpectraObservationFitting.jl",
-	"url": " https://rseng.github.io/software/repository/github/christiangil/StellarSpectraObservationFitting.jl",
-	"content": "Data-driven models for extremely precise radial velocity  (EPRV) spectra"
+	"github/neuroanatomy/thresholdmann": {
+	"id": "github/neuroanatomy/thresholdmann",
+	"title": "github/neuroanatomy/thresholdmann",
+	"url": " https://rseng.github.io/software/repository/github/neuroanatomy/thresholdmann",
+	"content": "A tool to apply a smoothly varying threshold to a nifti image"
 	},
-	"github/pandegroup/openmm": {
-	"id": "github/pandegroup/openmm",
-	"title": "github/pandegroup/openmm",
-	"url": " https://rseng.github.io/software/repository/github/pandegroup/openmm",
-	"content": "OpenMM is a toolkit for molecular simulation using high performance GPU code. "
+	"github/neuroanatomy/reorient": {
+	"id": "github/neuroanatomy/reorient",
+	"title": "github/neuroanatomy/reorient",
+	"url": " https://rseng.github.io/software/repository/github/neuroanatomy/reorient",
+	"content": "A tool for reorienting and cropping MRI data"
 	},
-	"github/BGPS/distance-omnibus": {
-	"id": "github/BGPS/distance-omnibus",
-	"title": "github/BGPS/distance-omnibus",
-	"url": " https://rseng.github.io/software/repository/github/BGPS/distance-omnibus",
-	"content": "Distance estimation method for molecular cloud clumps in the Milky Way"
+	"github/BrownDwarf/gollum": {
+	"id": "github/BrownDwarf/gollum",
+	"title": "github/BrownDwarf/gollum",
+	"url": " https://rseng.github.io/software/repository/github/BrownDwarf/gollum",
+	"content": "A microservice for programmatic access to precomputed synthetic spectral model grids in astronomy"
 	},
-	"github/rajewsky-lab/spacemake": {
-	"id": "github/rajewsky-lab/spacemake",
-	"title": "github/rajewsky-lab/spacemake",
-	"url": " https://rseng.github.io/software/repository/github/rajewsky-lab/spacemake",
+	"github/binzhulab/SUITOR": {
+	"id": "github/binzhulab/SUITOR",
+	"title": "github/binzhulab/SUITOR",
+	"url": " https://rseng.github.io/software/repository/github/binzhulab/SUITOR",
 	"content": "None"
 	},
-	"github/rajewsky-lab/novosparc": {
-	"id": "github/rajewsky-lab/novosparc",
-	"title": "github/rajewsky-lab/novosparc",
-	"url": " https://rseng.github.io/software/repository/github/rajewsky-lab/novosparc",
-	"content": "None"
+	"github/prioritizr/wdpar": {
+	"id": "github/prioritizr/wdpar",
+	"title": "github/prioritizr/wdpar",
+	"url": " https://rseng.github.io/software/repository/github/prioritizr/wdpar",
+	"content": "Interface to the World Database on Protected Areas"
 	},
-	"github/rajewsky-lab/dropbead": {
-	"id": "github/rajewsky-lab/dropbead",
-	"title": "github/rajewsky-lab/dropbead",
-	"url": " https://rseng.github.io/software/repository/github/rajewsky-lab/dropbead",
-	"content": "Basic Exploration and Analysis of Drop-seq Data"
+	"github/jbrakensiek/CORBITS": {
+	"id": "github/jbrakensiek/CORBITS",
+	"title": "github/jbrakensiek/CORBITS",
+	"url": " https://rseng.github.io/software/repository/github/jbrakensiek/CORBITS",
+	"content": "None"
 	},
-	"github/astroumd/miriad": {
-	"id": "github/astroumd/miriad",
-	"title": "github/astroumd/miriad",
-	"url": " https://rseng.github.io/software/repository/github/astroumd/miriad",
-	"content": "Classic CARMA version of MIRIAD"
+	"github/twopin/CAMP": {
+	"id": "github/twopin/CAMP",
+	"title": "github/twopin/CAMP",
+	"url": " https://rseng.github.io/software/repository/github/twopin/CAMP",
+	"content": "predicting peptide-protein interactions"
 	},
-	"github/scipy/scipy": {
-	"id": "github/scipy/scipy",
-	"title": "github/scipy/scipy",
-	"url": " https://rseng.github.io/software/repository/github/scipy/scipy",
-	"content": "Scipy library main repository"
+	"github/HEML/HEML": {
+	"id": "github/HEML/HEML",
+	"title": "github/HEML/HEML",
+	"url": " https://rseng.github.io/software/repository/github/HEML/HEML",
+	"content": "Open Source v1 for the Hyper-Elastic Mass Links (HEML) software"
 	},
-	"github/MillionConcepts/lhorizon": {
-	"id": "github/MillionConcepts/lhorizon",
-	"title": "github/MillionConcepts/lhorizon",
-	"url": " https://rseng.github.io/software/repository/github/MillionConcepts/lhorizon",
-	"content": "lhorizon helps you find things in the Solar System."
+	"github/pynucastro/pynucastro": {
+	"id": "github/pynucastro/pynucastro",
+	"title": "github/pynucastro/pynucastro",
+	"url": " https://rseng.github.io/software/repository/github/pynucastro/pynucastro",
+	"content": "python interfaces to the nuclear reaction rate databases"
 	},
-	"github/maxbernyk/lightcone": {
-	"id": "github/maxbernyk/lightcone",
-	"title": "github/maxbernyk/lightcone",
-	"url": " https://rseng.github.io/software/repository/github/maxbernyk/lightcone",
-	"content": "light-cone generating script"
+	"github/matvii/ADAM": {
+	"id": "github/matvii/ADAM",
+	"title": "github/matvii/ADAM",
+	"url": " https://rseng.github.io/software/repository/github/matvii/ADAM",
+	"content": "Software package for asteroid shape reconstruction from disk-resolved observations"
 	},
-	"github/deepsphere/deepsphere-cosmo-tf1": {
-	"id": "github/deepsphere/deepsphere-cosmo-tf1",
-	"title": "github/deepsphere/deepsphere-cosmo-tf1",
-	"url": " https://rseng.github.io/software/repository/github/deepsphere/deepsphere-cosmo-tf1",
-	"content": "A spherical convolutional neural network for cosmology (TFv1)."
+	"github/simon-prunet/defringe": {
+	"id": "github/simon-prunet/defringe",
+	"title": "github/simon-prunet/defringe",
+	"url": " https://rseng.github.io/software/repository/github/simon-prunet/defringe",
+	"content": "CCD infrared image defringing code in python, using cupy for GPU acceleration. Based on matrix completion of noisy matrix with low-rank regularization via nuclear norm."
 	},
-	"github/jgducoin/galclaim": {
-	"id": "github/jgducoin/galclaim",
-	"title": "github/jgducoin/galclaim",
-	"url": " https://rseng.github.io/software/repository/github/jgducoin/galclaim",
-	"content": "GALaxy Chance of Local Alignment algorIthM"
+	"github/dtamayo/reboundx": {
+	"id": "github/dtamayo/reboundx",
+	"title": "github/dtamayo/reboundx",
+	"url": " https://rseng.github.io/software/repository/github/dtamayo/reboundx",
+	"content": "A library for adding additional forces to the REBOUND N-body integration package"
 	},
-	"github/inpefess/gym-saturation": {
-	"id": "github/inpefess/gym-saturation",
-	"title": "github/inpefess/gym-saturation",
-	"url": " https://rseng.github.io/software/repository/github/inpefess/gym-saturation",
-	"content": "an OpenAI Gym environment for saturation provers"
+	"github/pybamm-team/PyBaMM": {
+	"id": "github/pybamm-team/PyBaMM",
+	"title": "github/pybamm-team/PyBaMM",
+	"url": " https://rseng.github.io/software/repository/github/pybamm-team/PyBaMM",
+	"content": "Fast and flexible physics-based battery models in Python"
 	},
-	"github/ylab-hi/ScanExitronLR": {
-	"id": "github/ylab-hi/ScanExitronLR",
-	"title": "github/ylab-hi/ScanExitronLR",
-	"url": " https://rseng.github.io/software/repository/github/ylab-hi/ScanExitronLR",
-	"content": "A package for the characterization and quantification of exitron splicing events in long-read RNA-seq"
+	"github/pybamm-team/liionpack": {
+	"id": "github/pybamm-team/liionpack",
+	"title": "github/pybamm-team/liionpack",
+	"url": " https://rseng.github.io/software/repository/github/pybamm-team/liionpack",
+	"content": "A battery pack simulation tool that uses the PyBaMM framework"
 	},
-	"github/ylab-hi/ScanITD": {
-	"id": "github/ylab-hi/ScanITD",
-	"title": "github/ylab-hi/ScanITD",
-	"url": " https://rseng.github.io/software/repository/github/ylab-hi/ScanITD",
-	"content": "None"
+	"github/pangenome/smoothxg": {
+	"id": "github/pangenome/smoothxg",
+	"title": "github/pangenome/smoothxg",
+	"url": " https://rseng.github.io/software/repository/github/pangenome/smoothxg",
+	"content": "linearize and simplify variation graphs using blocked partial order alignment"
 	},
-	"github/STEllAR-GROUP/hpx": {
-	"id": "github/STEllAR-GROUP/hpx",
-	"title": "github/STEllAR-GROUP/hpx",
-	"url": " https://rseng.github.io/software/repository/github/STEllAR-GROUP/hpx",
-	"content": "The C++ Standard Library for Parallelism and Concurrency"
+	"github/twesterhout/lattice-symmetries": {
+	"id": "github/twesterhout/lattice-symmetries",
+	"title": "github/twesterhout/lattice-symmetries",
+	"url": " https://rseng.github.io/software/repository/github/twesterhout/lattice-symmetries",
+	"content": "A package to simplify working with symmetry-adapted quantum many-body bases. Provides a good foundation for writing custom exact diagonalization and variational Monte Carlo software"
 	},
-	"github/STEllAR-GROUP/octotiger": {
-	"id": "github/STEllAR-GROUP/octotiger",
-	"title": "github/STEllAR-GROUP/octotiger",
-	"url": " https://rseng.github.io/software/repository/github/STEllAR-GROUP/octotiger",
-	"content": "Astrophysics program simulating the evolution of star systems based on the fast multipole method on adaptive Octrees"
+	"github/seshnadathur/Revolver": {
+	"id": "github/seshnadathur/Revolver",
+	"title": "github/seshnadathur/Revolver",
+	"url": " https://rseng.github.io/software/repository/github/seshnadathur/Revolver",
+	"content": "Real-space void locations from survey reconstruction"
 	},
-	"github/tne-lab/py-behav-box-v2": {
-	"id": "github/tne-lab/py-behav-box-v2",
-	"title": "github/tne-lab/py-behav-box-v2",
-	"url": " https://rseng.github.io/software/repository/github/tne-lab/py-behav-box-v2",
-	"content": "Pybehave is an open source software interface and framework for controlling behavioral experiments in neuroscience and psychology."
+	"github/AbbasAlameer/geoCancerPrognosticDatasetsRetriever": {
+	"id": "github/AbbasAlameer/geoCancerPrognosticDatasetsRetriever",
+	"title": "github/AbbasAlameer/geoCancerPrognosticDatasetsRetriever",
+	"url": " https://rseng.github.io/software/repository/github/AbbasAlameer/geoCancerPrognosticDatasetsRetriever",
+	"content": "GEO Cancer Prognostic Datasets Retriever is a bioinformatics tool for cancer prognostic dataset retrieval from the GEO website."
 	},
-	"github/Yida-Lin/libxdf": {
-	"id": "github/Yida-Lin/libxdf",
-	"title": "github/Yida-Lin/libxdf",
-	"url": " https://rseng.github.io/software/repository/github/Yida-Lin/libxdf",
-	"content": "C++ library for loading XDF files"
+	"github/teoxxx/nemiss_pbl": {
+	"id": "github/teoxxx/nemiss_pbl",
+	"title": "github/teoxxx/nemiss_pbl",
+	"url": " https://rseng.github.io/software/repository/github/teoxxx/nemiss_pbl",
+	"content": "nemiss neutrino emission from hydrocode data describing a simulated stellar binary system"
 	},
-	"github/saphir746/BiobankRead-Bash": {
-	"id": "github/saphir746/BiobankRead-Bash",
-	"title": "github/saphir746/BiobankRead-Bash",
-	"url": " https://rseng.github.io/software/repository/github/saphir746/BiobankRead-Bash",
-	"content": "Python scripts to extract and pre-process UKB data"
+	"github/teoxxx/rlos": {
+	"id": "github/teoxxx/rlos",
+	"title": "github/teoxxx/rlos",
+	"url": " https://rseng.github.io/software/repository/github/teoxxx/rlos",
+	"content": "RLOS Relativistic Line of Sight, time-resolved imaging of model astrophysical jets"
 	},
-	"github/tzhu-bio/UMI-ATAC-seq": {
-	"id": "github/tzhu-bio/UMI-ATAC-seq",
-	"title": "github/tzhu-bio/UMI-ATAC-seq",
-	"url": " https://rseng.github.io/software/repository/github/tzhu-bio/UMI-ATAC-seq",
-	"content": "None"
+	"github/teoxxx/nemiss_proper": {
+	"id": "github/teoxxx/nemiss_proper",
+	"title": "github/teoxxx/nemiss_proper",
+	"url": " https://rseng.github.io/software/repository/github/teoxxx/nemiss_proper",
+	"content": "nemiss code repo 2023"
 	},
-	"github/RichardMoot/LinearOne": {
-	"id": "github/RichardMoot/LinearOne",
-	"title": "github/RichardMoot/LinearOne",
-	"url": " https://rseng.github.io/software/repository/github/RichardMoot/LinearOne",
-	"content": "LinearOne is a prototype theorem prover for first-order (multiplicative, intuitionistic) linear logic."
+	"github/DOnghiaGroup/MGwave": {
+	"id": "github/DOnghiaGroup/MGwave",
+	"title": "github/DOnghiaGroup/MGwave",
+	"url": " https://rseng.github.io/software/repository/github/DOnghiaGroup/MGwave",
+	"content": "Wavelet transformation code to enable detection of kinematic moving groups in astronomical data."
 	},
-	"github/RichardMoot/GrailLight": {
-	"id": "github/RichardMoot/GrailLight",
-	"title": "github/RichardMoot/GrailLight",
-	"url": " https://rseng.github.io/software/repository/github/RichardMoot/GrailLight",
-	"content": "Light-weight chart parser for multimodal type-logical grammars"
+	"github/MarcNeveu/IcyDwarf": {
+	"id": "github/MarcNeveu/IcyDwarf",
+	"title": "github/MarcNeveu/IcyDwarf",
+	"url": " https://rseng.github.io/software/repository/github/MarcNeveu/IcyDwarf",
+	"content": "Coupled geophysical-geochemical-orbital evolution model of icy worlds."
 	},
-	"github/astroboylrx/Rubble": {
-	"id": "github/astroboylrx/Rubble",
-	"title": "github/astroboylrx/Rubble",
-	"url": " https://rseng.github.io/software/repository/github/astroboylrx/Rubble",
-	"content": "Rubble: an implicit coagulation code for simulating solid size distribution evolution in protoplanetary disks"
+	"github/jonas/tig": {
+	"id": "github/jonas/tig",
+	"title": "github/jonas/tig",
+	"url": " https://rseng.github.io/software/repository/github/jonas/tig",
+	"content": "Text-mode interface for git"
 	},
-	"github/astroboylrx/PLAN": {
-	"id": "github/astroboylrx/PLAN",
-	"title": "github/astroboylrx/PLAN",
-	"url": " https://rseng.github.io/software/repository/github/astroboylrx/PLAN",
-	"content": "PLAN: PLanetesimal ANalyzer"
+	"github/QibangLiu/PDLSM-FEM_mpi": {
+	"id": "github/QibangLiu/PDLSM-FEM_mpi",
+	"title": "github/QibangLiu/PDLSM-FEM_mpi",
+	"url": " https://rseng.github.io/software/repository/github/QibangLiu/PDLSM-FEM_mpi",
+	"content": "PDLSM-FEM solver is a parallel implementation of (adaptively) coupled peridynamics least squares minimization and finite element method (PDLSM-FEM) in 2D and 3D using MPI parallelism. This cross-platform solver is written in a C++ language and includes implicit static, explicit dynamic, and implicit dynamic solvers for structure analysis under displacement or traction loading."
 	},
-	"github/lucatelli/morphen": {
-	"id": "github/lucatelli/morphen",
-	"title": "github/lucatelli/morphen",
-	"url": " https://rseng.github.io/software/repository/github/lucatelli/morphen",
-	"content": "Collection of functions for astronomical image analysis and processing. These tools involves pure python, but also are integrated with CASA (https://casa.nrao.edu/)"
+	"github/jnktsj/DNApi": {
+	"id": "github/jnktsj/DNApi",
+	"title": "github/jnktsj/DNApi",
+	"url": " https://rseng.github.io/software/repository/github/jnktsj/DNApi",
+	"content": "De novo adapter prediction algorithm for small RNA sequencing data"
 	},
-	"github/Quantum-Dynamics-Hub/libra-code": {
-	"id": "github/Quantum-Dynamics-Hub/libra-code",
-	"title": "github/Quantum-Dynamics-Hub/libra-code",
-	"url": " https://rseng.github.io/software/repository/github/Quantum-Dynamics-Hub/libra-code",
-	"content": "None"
+	"github/cmgcds/fastvpinns": {
+	"id": "github/cmgcds/fastvpinns",
+	"title": "github/cmgcds/fastvpinns",
+	"url": " https://rseng.github.io/software/repository/github/cmgcds/fastvpinns",
+	"content": "FastVPINNs - A tensor-driven acceleration of VPINNs for complex geometries"
 	},
-	"github/dsoave/JLS": {
-	"id": "github/dsoave/JLS",
-	"title": "github/dsoave/JLS",
-	"url": " https://rseng.github.io/software/repository/github/dsoave/JLS",
-	"content": "JLS"
+	"github/parthenon-hpc-lab/parthenon": {
+	"id": "github/parthenon-hpc-lab/parthenon",
+	"title": "github/parthenon-hpc-lab/parthenon",
+	"url": " https://rseng.github.io/software/repository/github/parthenon-hpc-lab/parthenon",
+	"content": "Parthenon AMR infrastructure "
 	},
-	"github/stevengiacalone/triceratops": {
-	"id": "github/stevengiacalone/triceratops",
-	"title": "github/stevengiacalone/triceratops",
-	"url": " https://rseng.github.io/software/repository/github/stevengiacalone/triceratops",
-	"content": "Tool for Rating Interesting Candidate Exoplanets and Reliability Analysis of Transits Originating from Proximate Stars"
+	"github/moead-framework/framework": {
+	"id": "github/moead-framework/framework",
+	"title": "github/moead-framework/framework",
+	"url": " https://rseng.github.io/software/repository/github/moead-framework/framework",
+	"content": "MOEA/D is a general-purpose algorithm framework. It decomposes a multi-objective optimization problem into a number of single-objective optimization sub-problems and then uses a search heuristic to optimize these sub-problems simultaneously and cooperatively."
 	},
-	"github/GammaCascade/GCascade": {
-	"id": "github/GammaCascade/GCascade",
-	"title": "github/GammaCascade/GCascade",
-	"url": " https://rseng.github.io/software/repository/github/GammaCascade/GCascade",
-	"content": "Gamma-ray propagation package for Wolfram Mathematica"
+	"github/ndrakos/ICICLE": {
+	"id": "github/ndrakos/ICICLE",
+	"title": "github/ndrakos/ICICLE",
+	"url": " https://rseng.github.io/software/repository/github/ndrakos/ICICLE",
+	"content": "Initial Conditions for Isolated CoLlisionless systEms"
 	},
-	"github/Valar-hub/MMLPhoto-z": {
-	"id": "github/Valar-hub/MMLPhoto-z",
-	"title": "github/Valar-hub/MMLPhoto-z",
-	"url": " https://rseng.github.io/software/repository/github/Valar-hub/MMLPhoto-z",
+	"github/jhparkastro/gpcal": {
+	"id": "github/jhparkastro/gpcal",
+	"title": "github/jhparkastro/gpcal",
+	"url": " https://rseng.github.io/software/repository/github/jhparkastro/gpcal",
 	"content": "None"
 	},
-	"github/EbmeyerSt/GEnView": {
-	"id": "github/EbmeyerSt/GEnView",
-	"title": "github/EbmeyerSt/GEnView",
-	"url": " https://rseng.github.io/software/repository/github/EbmeyerSt/GEnView",
-	"content": "GEnView - A phylogeny based comparative genomics software to analyze the genetic environment of genes"
-	},
-	"github/bionlplab/GlaucomaNet": {
-	"id": "github/bionlplab/GlaucomaNet",
-	"title": "github/bionlplab/GlaucomaNet",
-	"url": " https://rseng.github.io/software/repository/github/bionlplab/GlaucomaNet",
-	"content": "A deep-learning algorithm for the diagnosis of primary open-angle glaucoma from fundus photographs"
+	"github/nasa/ncompare": {
+	"id": "github/nasa/ncompare",
+	"title": "github/nasa/ncompare",
+	"url": " https://rseng.github.io/software/repository/github/nasa/ncompare",
+	"content": "Compare the structure of two netCDF files at the command line"
 	},
-	"github/kazewong/flowMC": {
-	"id": "github/kazewong/flowMC",
-	"title": "github/kazewong/flowMC",
-	"url": " https://rseng.github.io/software/repository/github/kazewong/flowMC",
-	"content": "Normalizing-flow enhanced sampling package for probabilistic inference in Jax"
+	"github/nasa/KeplerPORTs": {
+	"id": "github/nasa/KeplerPORTs",
+	"title": "github/nasa/KeplerPORTs",
+	"url": " https://rseng.github.io/software/repository/github/nasa/KeplerPORTs",
+	"content": "None"
 	},
-	"github/carnotresearch/cr-sparse": {
-	"id": "github/carnotresearch/cr-sparse",
-	"title": "github/carnotresearch/cr-sparse",
-	"url": " https://rseng.github.io/software/repository/github/carnotresearch/cr-sparse",
-	"content": "Functional models and algorithms for sparse signal processing"
+	"github/nasa/kepler-robovetter": {
+	"id": "github/nasa/kepler-robovetter",
+	"title": "github/nasa/kepler-robovetter",
+	"url": " https://rseng.github.io/software/repository/github/nasa/kepler-robovetter",
+	"content": "None"
 	},
-	"github/infer-actively/pymdp": {
-	"id": "github/infer-actively/pymdp",
-	"title": "github/infer-actively/pymdp",
-	"url": " https://rseng.github.io/software/repository/github/infer-actively/pymdp",
-	"content": "A Python implementation of active inference for Markov Decision Processes"
+	"github/nasa/prog_models": {
+	"id": "github/nasa/prog_models",
+	"title": "github/nasa/prog_models",
+	"url": " https://rseng.github.io/software/repository/github/nasa/prog_models",
+	"content": "The NASA Prognostic Model Package is a Python framework focused on defining and building models for prognostics (computation of remaining useful life) of engineering systems, and provides a set of prognostics models for select components developed within this framework, suitable for use in prognostics applications for these components."
 	},
-	"github/ewanbarr/peasoup": {
-	"id": "github/ewanbarr/peasoup",
-	"title": "github/ewanbarr/peasoup",
-	"url": " https://rseng.github.io/software/repository/github/ewanbarr/peasoup",
-	"content": "C++/CUDA GPU pulsar searching library"
+	"github/nasa/K2CE": {
+	"id": "github/nasa/K2CE",
+	"title": "github/nasa/K2CE",
+	"url": " https://rseng.github.io/software/repository/github/nasa/K2CE",
+	"content": "Kepler K2 Cadence Events (K2CE) is a Python data visualization and manipulation tool for astronomers to identify and remove cadences (observations) associated with problematic thruster events, thus producing cleaner light curves.  K2CE was designed to work with standard Kepler or K2 data products: long-cadence (30 min) and short-cadence (1 min) light curve files and long-cadence and short-cadence target pixel files.  The tool has been modified to work with light curve files and target pixel files from the TESS mission."
 	},
-	"github/thomaswilliamsastro/mcfine": {
-	"id": "github/thomaswilliamsastro/mcfine",
-	"title": "github/thomaswilliamsastro/mcfine",
-	"url": " https://rseng.github.io/software/repository/github/thomaswilliamsastro/mcfine",
-	"content": "Muli-component, hyperfine fitting tool"
+	"github/nasa/simupy-flight": {
+	"id": "github/nasa/simupy-flight",
+	"title": "github/nasa/simupy-flight",
+	"url": " https://rseng.github.io/software/repository/github/nasa/simupy-flight",
+	"content": "None"
 	},
-	"github/jenniferlu717/Bracken": {
-	"id": "github/jenniferlu717/Bracken",
-	"title": "github/jenniferlu717/Bracken",
-	"url": " https://rseng.github.io/software/repository/github/jenniferlu717/Bracken",
-	"content": "(Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample."
+	"github/nasa/Kamodo": {
+	"id": "github/nasa/Kamodo",
+	"title": "github/nasa/Kamodo",
+	"url": " https://rseng.github.io/software/repository/github/nasa/Kamodo",
+	"content": "None"
 	},
-	"github/fkiwy/Finder_charts": {
-	"id": "github/fkiwy/Finder_charts",
-	"title": "github/fkiwy/Finder_charts",
-	"url": " https://rseng.github.io/software/repository/github/fkiwy/Finder_charts",
-	"content": "A Python module to create finder charts from image data of various sky surveys"
+	"github/insilicomedicine/GENTRL": {
+	"id": "github/insilicomedicine/GENTRL",
+	"title": "github/insilicomedicine/GENTRL",
+	"url": " https://rseng.github.io/software/repository/github/insilicomedicine/GENTRL",
+	"content": "Generative Tensorial Reinforcement Learning (GENTRL) model"
 	},
-	"github/fkiwy/AstroToolBox": {
-	"id": "github/fkiwy/AstroToolBox",
-	"title": "github/fkiwy/AstroToolBox",
-	"url": " https://rseng.github.io/software/repository/github/fkiwy/AstroToolBox",
-	"content": "Java tool set for the identification and classification of astronomical objects with a focus on low-mass stars and ultra-cool dwarfs"
+	"github/aL3x-O-o-Hung/CAT-Net": {
+	"id": "github/aL3x-O-o-Hung/CAT-Net",
+	"title": "github/aL3x-O-o-Hung/CAT-Net",
+	"url": " https://rseng.github.io/software/repository/github/aL3x-O-o-Hung/CAT-Net",
+	"content": "None"
 	},
-	"github/fkiwy/unTimely_Catalog_explorer": {
-	"id": "github/fkiwy/unTimely_Catalog_explorer",
-	"title": "github/fkiwy/unTimely_Catalog_explorer",
-	"url": " https://rseng.github.io/software/repository/github/fkiwy/unTimely_Catalog_explorer",
-	"content": "A search and visualization tool for the unTimely Catalog"
+	"github/ledatelescope/bifrost": {
+	"id": "github/ledatelescope/bifrost",
+	"title": "github/ledatelescope/bifrost",
+	"url": " https://rseng.github.io/software/repository/github/ledatelescope/bifrost",
+	"content": "A stream processing framework for high-throughput applications."
 	},
-	"github/baker-laboratory/RoseTTAFold-All-Atom": {
-	"id": "github/baker-laboratory/RoseTTAFold-All-Atom",
-	"title": "github/baker-laboratory/RoseTTAFold-All-Atom",
-	"url": " https://rseng.github.io/software/repository/github/baker-laboratory/RoseTTAFold-All-Atom",
-	"content": "RoseTTAFold All-Atom is a biomolecular structure prediction neural network that can predict a broad range of biomolecular assemblies."
+	"github/wf4ever/astrotaverna": {
+	"id": "github/wf4ever/astrotaverna",
+	"title": "github/wf4ever/astrotaverna",
+	"url": " https://rseng.github.io/software/repository/github/wf4ever/astrotaverna",
+	"content": "Astronomy plugins for Taverna Workbench"
 	},
-	"github/ginolhac/mapDamage": {
-	"id": "github/ginolhac/mapDamage",
-	"title": "github/ginolhac/mapDamage",
-	"url": " https://rseng.github.io/software/repository/github/ginolhac/mapDamage",
-	"content": "mapDamage: tracking and quantifying damage patterns in ancient DNA sequences"
+	"github/leonzheng2/efficient-butterfly": {
+	"id": "github/leonzheng2/efficient-butterfly",
+	"title": "github/leonzheng2/efficient-butterfly",
+	"url": " https://rseng.github.io/software/repository/github/leonzheng2/efficient-butterfly",
+	"content": "Code for reproducible research - Efficient identification of butterfly sparse matrix factorizations"
 	},
-	"github/COBRAPROsimulator/COBRAPRO": {
-	"id": "github/COBRAPROsimulator/COBRAPRO",
-	"title": "github/COBRAPROsimulator/COBRAPRO",
-	"url": " https://rseng.github.io/software/repository/github/COBRAPROsimulator/COBRAPRO",
+	"github/leonzheng2/butterfly": {
+	"id": "github/leonzheng2/butterfly",
+	"title": "github/leonzheng2/butterfly",
+	"url": " https://rseng.github.io/software/repository/github/leonzheng2/butterfly",
 	"content": "None"
 	},
-	"github/matthias-mayr/Cartesian-Impedance-Controller": {
-	"id": "github/matthias-mayr/Cartesian-Impedance-Controller",
-	"title": "github/matthias-mayr/Cartesian-Impedance-Controller",
-	"url": " https://rseng.github.io/software/repository/github/matthias-mayr/Cartesian-Impedance-Controller",
-	"content": "A C++ implementation of Cartesian impedance control for torque-controlled manipulators with ROS bindings."
-	},
-	"github/OFFIS-DAI/Mango.jl": {
-	"id": "github/OFFIS-DAI/Mango.jl",
-	"title": "github/OFFIS-DAI/Mango.jl",
-	"url": " https://rseng.github.io/software/repository/github/OFFIS-DAI/Mango.jl",
-	"content": "Modular Julia-based agent framework to implement multi-agent systems"
+	"github/andresGranadosC/GalRotpy": {
+	"id": "github/andresGranadosC/GalRotpy",
+	"title": "github/andresGranadosC/GalRotpy",
+	"url": " https://rseng.github.io/software/repository/github/andresGranadosC/GalRotpy",
+	"content": "A Python-based tool to parametrize the rotation curve and the gravitational potential of disk-like galaxies"
 	},
-	"github/sciapp/sampledb": {
-	"id": "github/sciapp/sampledb",
-	"title": "github/sciapp/sampledb",
-	"url": " https://rseng.github.io/software/repository/github/sciapp/sampledb",
-	"content": "Sample and Measurement Metadata Database"
+	"github/cullanhowlett/l-picola": {
+	"id": "github/cullanhowlett/l-picola",
+	"title": "github/cullanhowlett/l-picola",
+	"url": " https://rseng.github.io/software/repository/github/cullanhowlett/l-picola",
+	"content": "A public repository for the code L-PICOLA"
 	},
-	"github/zblz/naima": {
-	"id": "github/zblz/naima",
-	"title": "github/zblz/naima",
-	"url": " https://rseng.github.io/software/repository/github/zblz/naima",
-	"content": "Derivation of non-thermal particle distributions through MCMC spectral fitting"
+	"github/glenco/lensed": {
+	"id": "github/glenco/lensed",
+	"title": "github/glenco/lensed",
+	"url": " https://rseng.github.io/software/repository/github/glenco/lensed",
+	"content": "forward reconstruction of lenses and sources from strong lensing observations"
 	},
-	"github/saberyoung/haffet": {
-	"id": "github/saberyoung/haffet",
-	"title": "github/saberyoung/haffet",
-	"url": " https://rseng.github.io/software/repository/github/saberyoung/haffet",
-	"content": "Repository to analyze SN photometric and spectroscopic data"
+	"github/d-tear/SIAL": {
+	"id": "github/d-tear/SIAL",
+	"title": "github/d-tear/SIAL",
+	"url": " https://rseng.github.io/software/repository/github/d-tear/SIAL",
+	"content": "Simple Image Analysis Library"
 	},
-	"github/dftd3/simple-dftd3": {
-	"id": "github/dftd3/simple-dftd3",
-	"title": "github/dftd3/simple-dftd3",
-	"url": " https://rseng.github.io/software/repository/github/dftd3/simple-dftd3",
-	"content": "Library first implementation of the D3 dispersion correction"
+	"github/darthoctopus/reggae": {
+	"id": "github/darthoctopus/reggae",
+	"title": "github/darthoctopus/reggae",
+	"url": " https://rseng.github.io/software/repository/github/darthoctopus/reggae",
+	"content": "pbjam for dipole modes"
 	},
-	"github/BradGreig/21CMMC": {
-	"id": "github/BradGreig/21CMMC",
-	"title": "github/BradGreig/21CMMC",
-	"url": " https://rseng.github.io/software/repository/github/BradGreig/21CMMC",
-	"content": "A parallelised, Monte Carlo Markov Chain analysis tool for the epoch of reionisation (EoR)"
+	"github/ggobi/ggobi": {
+	"id": "github/ggobi/ggobi",
+	"title": "github/ggobi/ggobi",
+	"url": " https://rseng.github.io/software/repository/github/ggobi/ggobi",
+	"content": "High dimensional data vis"
 	},
-	"github/Valires/er-evaluation": {
-	"id": "github/Valires/er-evaluation",
-	"title": "github/Valires/er-evaluation",
-	"url": " https://rseng.github.io/software/repository/github/Valires/er-evaluation",
-	"content": "An End-to-End Evaluation Framework for Entity Resolution Systems"
+	"github/quatrope/ProperImage": {
+	"id": "github/quatrope/ProperImage",
+	"title": "github/quatrope/ProperImage",
+	"url": " https://rseng.github.io/software/repository/github/quatrope/ProperImage",
+	"content": "Proper Image utils for astronomy. "
 	},
-	"github/Fenyutanchan/solar-vSI": {
-	"id": "github/Fenyutanchan/solar-vSI",
-	"title": "github/Fenyutanchan/solar-vSI",
-	"url": " https://rseng.github.io/software/repository/github/Fenyutanchan/solar-vSI",
-	"content": "None"
+	"github/quatrope/feets": {
+	"id": "github/quatrope/feets",
+	"title": "github/quatrope/feets",
+	"url": " https://rseng.github.io/software/repository/github/quatrope/feets",
+	"content": "feATURE eXTRACTOR FOR tIME sERIES"
 	},
-	"github/LiesaSalzer/MobilityTransformR": {
-	"id": "github/LiesaSalzer/MobilityTransformR",
-	"title": "github/LiesaSalzer/MobilityTransformR",
-	"url": " https://rseng.github.io/software/repository/github/LiesaSalzer/MobilityTransformR",
-	"content": "Effective mobility Transformation for CE-MS data "
+	"github/atomneb/AtomNeb-py": {
+	"id": "github/atomneb/AtomNeb-py",
+	"title": "github/atomneb/AtomNeb-py",
+	"url": " https://rseng.github.io/software/repository/github/atomneb/AtomNeb-py",
+	"content": "AtomNeb - Python Package for Atomic Data of Ionized Nebulae"
 	},
-	"github/jacobblum/simDRIFT": {
-	"id": "github/jacobblum/simDRIFT",
-	"title": "github/jacobblum/simDRIFT",
-	"url": " https://rseng.github.io/software/repository/github/jacobblum/simDRIFT",
-	"content": "simDRIFT - A software package for massively parallel forward simulation of Pulsed Gradient Spin Echo diffusion weighted MRI experiments on biophysically accurate tissue systems. "
+	"github/aidenlab/juicer": {
+	"id": "github/aidenlab/juicer",
+	"title": "github/aidenlab/juicer",
+	"url": " https://rseng.github.io/software/repository/github/aidenlab/juicer",
+	"content": "A One-Click System for Analyzing Loop-Resolution Hi-C Experiments"
 	},
-	"github/avigan/pyZELDA": {
-	"id": "github/avigan/pyZELDA",
-	"title": "github/avigan/pyZELDA",
-	"url": " https://rseng.github.io/software/repository/github/avigan/pyZELDA",
-	"content": "Zernike wavefront sensor analysis and simulation tools"
+	"github/gmbrandt/xwavecal": {
+	"id": "github/gmbrandt/xwavecal",
+	"title": "github/gmbrandt/xwavecal",
+	"url": " https://rseng.github.io/software/repository/github/gmbrandt/xwavecal",
+	"content": "A library of routines for wavelength calibrating echelle spectrographs for high precision radial velocity work. A limited data-reduction pipeline is included."
 	},
-	"github/avigan/SPHERE": {
-	"id": "github/avigan/SPHERE",
-	"title": "github/avigan/SPHERE",
-	"url": " https://rseng.github.io/software/repository/github/avigan/SPHERE",
-	"content": "Reduction and analysis code for the VLT/SPHERE instrument"
+	"github/gmbrandt/HTOF": {
+	"id": "github/gmbrandt/HTOF",
+	"title": "github/gmbrandt/HTOF",
+	"url": " https://rseng.github.io/software/repository/github/gmbrandt/HTOF",
+	"content": "HTOF: Code which parses the intermediate data from Hipparcos and Gaia and fits astrometric solutions to those data. Capable of computing likelyhoods and parameter errors in line with the catalog."
 	},
-	"github/deepmind/alphafold": {
-	"id": "github/deepmind/alphafold",
-	"title": "github/deepmind/alphafold",
-	"url": " https://rseng.github.io/software/repository/github/deepmind/alphafold",
-	"content": "Open source code for AlphaFold."
+	"github/vdemichev/DiaNN": {
+	"id": "github/vdemichev/DiaNN",
+	"title": "github/vdemichev/DiaNN",
+	"url": " https://rseng.github.io/software/repository/github/vdemichev/DiaNN",
+	"content": "DIA-NN - a universal automated software suite for DIA proteomics data analysis. "
 	},
-	"github/AshleySpindler/AstroVaDEr-Public": {
-	"id": "github/AshleySpindler/AstroVaDEr-Public",
-	"title": "github/AshleySpindler/AstroVaDEr-Public",
-	"url": " https://rseng.github.io/software/repository/github/AshleySpindler/AstroVaDEr-Public",
-	"content": "None"
+	"github/forrest-lab/scMatch": {
+	"id": "github/forrest-lab/scMatch",
+	"title": "github/forrest-lab/scMatch",
+	"url": " https://rseng.github.io/software/repository/github/forrest-lab/scMatch",
+	"content": "scMatch: a single-cell gene expression profile annotation tool using reference datasets"
 	},
-	"github/Nico-Curti/rFBP": {
-	"id": "github/Nico-Curti/rFBP",
-	"title": "github/Nico-Curti/rFBP",
-	"url": " https://rseng.github.io/software/repository/github/Nico-Curti/rFBP",
-	"content": "Replicated Focusing Belief Propagation algorithm"
+	"github/HorvathLab/ReQTL": {
+	"id": "github/HorvathLab/ReQTL",
+	"title": "github/HorvathLab/ReQTL",
+	"url": " https://rseng.github.io/software/repository/github/HorvathLab/ReQTL",
+	"content": "ReQTL: Identifying correlations between expressed SNVs and gene expression using RNA-sequencing data"
 	},
-	"github/KenethGarcia/ClassiPyGRB": {
-	"id": "github/KenethGarcia/ClassiPyGRB",
-	"title": "github/KenethGarcia/ClassiPyGRB",
-	"url": " https://rseng.github.io/software/repository/github/KenethGarcia/ClassiPyGRB",
-	"content": "This repository contains all the updates, code, and documentation related to ClassiPyGRB."
+	"github/lsncibb/microbiomeGWAS": {
+	"id": "github/lsncibb/microbiomeGWAS",
+	"title": "github/lsncibb/microbiomeGWAS",
+	"url": " https://rseng.github.io/software/repository/github/lsncibb/microbiomeGWAS",
+	"content": "None"
 	},
-	"github/joglekara/VlaPy": {
-	"id": "github/joglekara/VlaPy",
-	"title": "github/joglekara/VlaPy",
-	"url": " https://rseng.github.io/software/repository/github/joglekara/VlaPy",
-	"content": "1D-1V Vlasov-Poisson(-Fokker-Planck) Plasma Physics Simulation Tool"
+	"github/j-erler/pymf": {
+	"id": "github/j-erler/pymf",
+	"title": "github/j-erler/pymf",
+	"url": " https://rseng.github.io/software/repository/github/j-erler/pymf",
+	"content": "A python implementation of several matched filtering techniques for astronomical images."
 	},
-	"github/ericcombiolab/LRTK": {
-	"id": "github/ericcombiolab/LRTK",
-	"title": "github/ericcombiolab/LRTK",
-	"url": " https://rseng.github.io/software/repository/github/ericcombiolab/LRTK",
-	"content": "A unified and versatile toolkit for analyzing Linked-Read sequencing data"
+	"github/ADAH-EviDENce/evidence": {
+	"id": "github/ADAH-EviDENce/evidence",
+	"title": "github/ADAH-EviDENce/evidence",
+	"url": " https://rseng.github.io/software/repository/github/ADAH-EviDENce/evidence",
+	"content": "doc2vec-based assisted close reading with support for abstract concept-based search and context-based search"
 	},
-	"github/alvinxhan/Phydelity": {
-	"id": "github/alvinxhan/Phydelity",
-	"title": "github/alvinxhan/Phydelity",
-	"url": " https://rseng.github.io/software/repository/github/alvinxhan/Phydelity",
-	"content": "Inference of putative transmission phylogenetic clusters"
+	"github/pyxnat/pyxnat": {
+	"id": "github/pyxnat/pyxnat",
+	"title": "github/pyxnat/pyxnat",
+	"url": " https://rseng.github.io/software/repository/github/pyxnat/pyxnat",
+	"content": "XNAT in Python"
 	},
-	"github/deeprob/ThioesteraseEnzymeSpecificity": {
-	"id": "github/deeprob/ThioesteraseEnzymeSpecificity",
-	"title": "github/deeprob/ThioesteraseEnzymeSpecificity",
-	"url": " https://rseng.github.io/software/repository/github/deeprob/ThioesteraseEnzymeSpecificity",
-	"content": "None"
+	"github/mithun218/GiNaCDE": {
+	"id": "github/mithun218/GiNaCDE",
+	"title": "github/mithun218/GiNaCDE",
+	"url": " https://rseng.github.io/software/repository/github/mithun218/GiNaCDE",
+	"content": "GiNaC Differential Equation Solver"
 	},
-	"github/occupationMeasurement/occupationMeasurement": {
-	"id": "github/occupationMeasurement/occupationMeasurement",
-	"title": "github/occupationMeasurement/occupationMeasurement",
-	"url": " https://rseng.github.io/software/repository/github/occupationMeasurement/occupationMeasurement",
-	"content": "A package to help with the (interactive) coding and measurement of occupations"
+	"github/mariapetro/LeHaMoC": {
+	"id": "github/mariapetro/LeHaMoC",
+	"title": "github/mariapetro/LeHaMoC",
+	"url": " https://rseng.github.io/software/repository/github/mariapetro/LeHaMoC",
+	"content": "Leptonic-Hadronic Modeling Code for High-Energy Astrophysical Sources"
 	},
-	"github/jet-net/JetNet": {
-	"id": "github/jet-net/JetNet",
-	"title": "github/jet-net/JetNet",
-	"url": " https://rseng.github.io/software/repository/github/jet-net/JetNet",
-	"content": "For developing and reproducing ML + HEP projects."
+	"github/openjournals/joss": {
+	"id": "github/openjournals/joss",
+	"title": "github/openjournals/joss",
+	"url": " https://rseng.github.io/software/repository/github/openjournals/joss",
+	"content": "The Journal of Open Source Software"
 	},
-	"github/Joost987/MONDPMesh": {
-	"id": "github/Joost987/MONDPMesh",
-	"title": "github/Joost987/MONDPMesh",
-	"url": " https://rseng.github.io/software/repository/github/Joost987/MONDPMesh",
-	"content": "Particle mesh code for modified Newtonian dynamics simulations"
+	"github/mkargo/pipeline": {
+	"id": "github/mkargo/pipeline",
+	"title": "github/mkargo/pipeline",
+	"url": " https://rseng.github.io/software/repository/github/mkargo/pipeline",
+	"content": "Data reduction pipeline for e-MERLIN"
 	},
-	"github/sorenwacker/ProteomicsQC": {
-	"id": "github/sorenwacker/ProteomicsQC",
-	"title": "github/sorenwacker/ProteomicsQC",
-	"url": " https://rseng.github.io/software/repository/github/sorenwacker/ProteomicsQC",
-	"content": "Quality Control Pipeline Server for quantitative Proteomics"
+	"github/jdonnert/WVTICs": {
+	"id": "github/jdonnert/WVTICs",
+	"title": "github/jdonnert/WVTICs",
+	"url": " https://rseng.github.io/software/repository/github/jdonnert/WVTICs",
+	"content": "SPH initial conditions using Weighted Voronoi Tesselations"
 	},
-	"github/jpierel14/sntd": {
-	"id": "github/jpierel14/sntd",
-	"title": "github/jpierel14/sntd",
-	"url": " https://rseng.github.io/software/repository/github/jpierel14/sntd",
-	"content": "SNTD is a Python package dedicated to measuring time delays for strongly lensed and multiply-imaged SN. The package can simulate lensed SN, fit for each SN time delay, and propagate the results all the way through to cosmological constraints."
+	"github/OncoRNALab/CiLiQuant": {
+	"id": "github/OncoRNALab/CiLiQuant",
+	"title": "github/OncoRNALab/CiLiQuant",
+	"url": " https://rseng.github.io/software/repository/github/OncoRNALab/CiLiQuant",
+	"content": "None"
 	},
-	"github/jpierel14/snsed": {
-	"id": "github/jpierel14/snsed",
-	"title": "github/jpierel14/snsed",
-	"url": " https://rseng.github.io/software/repository/github/jpierel14/snsed",
+	"github/GENtle-persons/gentle-m": {
+	"id": "github/GENtle-persons/gentle-m",
+	"title": "github/GENtle-persons/gentle-m",
+	"url": " https://rseng.github.io/software/repository/github/GENtle-persons/gentle-m",
 	"content": "None"
 	},
-	"github/ester-project/ester": {
-	"id": "github/ester-project/ester",
-	"title": "github/ester-project/ester",
-	"url": " https://rseng.github.io/software/repository/github/ester-project/ester",
-	"content": "Evolution STEllaire en Rotation."
+	"github/OpenWaterAnalytics/EPyT": {
+	"id": "github/OpenWaterAnalytics/EPyT",
+	"title": "github/OpenWaterAnalytics/EPyT",
+	"url": " https://rseng.github.io/software/repository/github/OpenWaterAnalytics/EPyT",
+	"content": "EPyT: An EPANET-Python Toolkit for Smart Water Network Simulations"
 	},
-	"github/VeinsOfTheEarth/rabpro": {
-	"id": "github/VeinsOfTheEarth/rabpro",
-	"title": "github/VeinsOfTheEarth/rabpro",
-	"url": " https://rseng.github.io/software/repository/github/VeinsOfTheEarth/rabpro",
-	"content": "River and basin profiler"
+	"github/OpenWaterAnalytics/pyswmm": {
+	"id": "github/OpenWaterAnalytics/pyswmm",
+	"title": "github/OpenWaterAnalytics/pyswmm",
+	"url": " https://rseng.github.io/software/repository/github/OpenWaterAnalytics/pyswmm",
+	"content": "Python Wrappers for SWMM"
 	},
-	"github/cdominik/optool": {
-	"id": "github/cdominik/optool",
-	"title": "github/cdominik/optool",
-	"url": " https://rseng.github.io/software/repository/github/cdominik/optool",
-	"content": "Command-line driven tool to create dust opacities"
+	"github/sheryl-ai/MetaPred": {
+	"id": "github/sheryl-ai/MetaPred",
+	"title": "github/sheryl-ai/MetaPred",
+	"url": " https://rseng.github.io/software/repository/github/sheryl-ai/MetaPred",
+	"content": "MetaPred: Meta-Learning for Clinical Risk Prediction with Limited Patient Electronic Health Records (KDD 2019)"
 	},
-	"github/neuralhydrology/neuralhydrology": {
-	"id": "github/neuralhydrology/neuralhydrology",
-	"title": "github/neuralhydrology/neuralhydrology",
-	"url": " https://rseng.github.io/software/repository/github/neuralhydrology/neuralhydrology",
-	"content": "Python library to train neural networks with a strong focus on hydrological applications."
+	"github/olivecha/guitarsounds": {
+	"id": "github/olivecha/guitarsounds",
+	"title": "github/olivecha/guitarsounds",
+	"url": " https://rseng.github.io/software/repository/github/olivecha/guitarsounds",
+	"content": "python library to analyse guitar sounds"
 	},
-	"github/tofflemire/saphires": {
-	"id": "github/tofflemire/saphires",
-	"title": "github/tofflemire/saphires",
-	"url": " https://rseng.github.io/software/repository/github/tofflemire/saphires",
-	"content": "Analysis tools for stellar spectroscopy"
+	"github/rainwoodman/bigfile": {
+	"id": "github/rainwoodman/bigfile",
+	"title": "github/rainwoodman/bigfile",
+	"url": " https://rseng.github.io/software/repository/github/rainwoodman/bigfile",
+	"content": "A reproducible massively parallel IO library for hierarchical data"
 	},
-	"github/nickfarrow/GalacticDNSMass": {
-	"id": "github/nickfarrow/GalacticDNSMass",
-	"title": "github/nickfarrow/GalacticDNSMass",
-	"url": " https://rseng.github.io/software/repository/github/nickfarrow/GalacticDNSMass",
-	"content": "How heavy are Neutron Stars in binary systems within our Galaxy? A demonstration of how bayesian inference and nested sampling allows us to explore the mass distributions of Galactic Double Neutron Star systems."
+	"github/ismael-mendoza/ShapeMeasurementFisherFormalism": {
+	"id": "github/ismael-mendoza/ShapeMeasurementFisherFormalism",
+	"title": "github/ismael-mendoza/ShapeMeasurementFisherFormalism",
+	"url": " https://rseng.github.io/software/repository/github/ismael-mendoza/ShapeMeasurementFisherFormalism",
+	"content": "Fisher Formalism for Weak Lensing using 1 or 2 Galsim galaxies."
 	},
-	"github/tolkit/telomeric-identifier": {
-	"id": "github/tolkit/telomeric-identifier",
-	"title": "github/tolkit/telomeric-identifier",
-	"url": " https://rseng.github.io/software/repository/github/tolkit/telomeric-identifier",
-	"content": "Identify and find telomeres, or telomeric repeats in a genome."
+	"github/MikeHeiber/Excimontec": {
+	"id": "github/MikeHeiber/Excimontec",
+	"title": "github/MikeHeiber/Excimontec",
+	"url": " https://rseng.github.io/software/repository/github/MikeHeiber/Excimontec",
+	"content": "Excimontec is an open-source KMC simulation software package for modeling the optoelectronic processes in organic semiconductor materials and devices, such as OPVs, OLEDs, and more. "
 	},
-	"github/ycwu1030/EvoEMD": {
-	"id": "github/ycwu1030/EvoEMD",
-	"title": "github/ycwu1030/EvoEMD",
-	"url": " https://rseng.github.io/software/repository/github/ycwu1030/EvoEMD",
-	"content": "Evolution with an Early Matter-Dominated era"
+	"github/jan-rybizki/gdr2_completeness": {
+	"id": "github/jan-rybizki/gdr2_completeness",
+	"title": "github/jan-rybizki/gdr2_completeness",
+	"url": " https://rseng.github.io/software/repository/github/jan-rybizki/gdr2_completeness",
+	"content": "This package helps with downloading GaiaDR2 data and gives approximate completeness maps over the sky and per G magntude bin. It also has a function to query the GDR2 RVS sample selection function."
 	},
-	"github/davi-rodrigues/CCBH-Numerics": {
-	"id": "github/davi-rodrigues/CCBH-Numerics",
-	"title": "github/davi-rodrigues/CCBH-Numerics",
-	"url": " https://rseng.github.io/software/repository/github/davi-rodrigues/CCBH-Numerics",
-	"content": "Using gravitational wave data, CCBH-Numerics computes the probability of the existence of a single cosmologically coupled black hole with a formation mass below a specified threshold. This tool was developed alongside the paper by Amendola, Rodrigues, Kumar, and Quartin, published in MNRAS in 2024"
+	"github/jan-rybizki/Chempy": {
+	"id": "github/jan-rybizki/Chempy",
+	"title": "github/jan-rybizki/Chempy",
+	"url": " https://rseng.github.io/software/repository/github/jan-rybizki/Chempy",
+	"content": "Start with the Chempy tutorial"
 	},
-	"github/davi-rodrigues/NAVanalysis": {
-	"id": "github/davi-rodrigues/NAVanalysis",
-	"title": "github/davi-rodrigues/NAVanalysis",
-	"url": " https://rseng.github.io/software/repository/github/davi-rodrigues/NAVanalysis",
-	"content": "Normalized Additional Velocity analysis"
+	"github/jan-rybizki/Galaxia_wrap": {
+	"id": "github/jan-rybizki/Galaxia_wrap",
+	"title": "github/jan-rybizki/Galaxia_wrap",
+	"url": " https://rseng.github.io/software/repository/github/jan-rybizki/Galaxia_wrap",
+	"content": "A few python scripts and a tutorial notebook to create and manipulate Galaxia mock catalogues"
 	},
-	"github/davemlz/eemont": {
-	"id": "github/davemlz/eemont",
-	"title": "github/davemlz/eemont",
-	"url": " https://rseng.github.io/software/repository/github/davemlz/eemont",
-	"content": "A python package that extends Google Earth Engine."
+	"github/farhanferoz/SkyNet": {
+	"id": "github/farhanferoz/SkyNet",
+	"title": "github/farhanferoz/SkyNet",
+	"url": " https://rseng.github.io/software/repository/github/farhanferoz/SkyNet",
+	"content": "SkyNet is an efficient and robust neural network training code for machine learning."
 	},
-	"github/stemangiola/tidyHeatmap": {
-	"id": "github/stemangiola/tidyHeatmap",
-	"title": "github/stemangiola/tidyHeatmap",
-	"url": " https://rseng.github.io/software/repository/github/stemangiola/tidyHeatmap",
-	"content": "Draw heatmap simply using a tidy data frame"
+	"github/farhanferoz/BAMBI": {
+	"id": "github/farhanferoz/BAMBI",
+	"title": "github/farhanferoz/BAMBI",
+	"url": " https://rseng.github.io/software/repository/github/farhanferoz/BAMBI",
+	"content": "None"
 	},
-	"github/esteinig/nanoq": {
-	"id": "github/esteinig/nanoq",
-	"title": "github/esteinig/nanoq",
-	"url": " https://rseng.github.io/software/repository/github/esteinig/nanoq",
-	"content": "Minimal but speedy quality control for nanopore reads in Rust :bear:"
+	"github/farhanferoz/MultiNest": {
+	"id": "github/farhanferoz/MultiNest",
+	"title": "github/farhanferoz/MultiNest",
+	"url": " https://rseng.github.io/software/repository/github/farhanferoz/MultiNest",
+	"content": "MultiNest is a Bayesian inference tool which calculates the evidence and explores the parameter space which may contain multiple posterior modes and pronounced (curving) degeneracies in moderately high dimensions. "
 	},
-	"github/daniellefenech/SERPent": {
-	"id": "github/daniellefenech/SERPent",
-	"title": "github/daniellefenech/SERPent",
-	"url": " https://rseng.github.io/software/repository/github/daniellefenech/SERPent",
-	"content": "RFI mitigation software"
+	"github/RenLabBioinformatics/M6Allele": {
+	"id": "github/RenLabBioinformatics/M6Allele",
+	"title": "github/RenLabBioinformatics/M6Allele",
+	"url": " https://rseng.github.io/software/repository/github/RenLabBioinformatics/M6Allele",
+	"content": "M6Allele: A toolkit for detection of allele-specific RNA N6-methyladenosine modifications"
 	},
-	"github/MOSAICS-NIH/MOSAICS": {
-	"id": "github/MOSAICS-NIH/MOSAICS",
-	"title": "github/MOSAICS-NIH/MOSAICS",
-	"url": " https://rseng.github.io/software/repository/github/MOSAICS-NIH/MOSAICS",
-	"content": "A collection of tools for characterizing membrane structure and dynamics within simulated trajectories of molecular systems."
+	"github/Sheng-Qi-Yang/HIILines": {
+	"id": "github/Sheng-Qi-Yang/HIILines",
+	"title": "github/Sheng-Qi-Yang/HIILines",
+	"url": " https://rseng.github.io/software/repository/github/Sheng-Qi-Yang/HIILines",
+	"content": "An analytical ionized ISM emission line model. "
 	},
-	"github/gasparl/possa": {
-	"id": "github/gasparl/possa",
-	"title": "github/gasparl/possa",
-	"url": " https://rseng.github.io/software/repository/github/gasparl/possa",
-	"content": "POSSA: Power simulation for sequential analyses and multiple hypotheses."
+	"github/hydrosolutions/riversCentralAsia": {
+	"id": "github/hydrosolutions/riversCentralAsia",
+	"title": "github/hydrosolutions/riversCentralAsia",
+	"url": " https://rseng.github.io/software/repository/github/hydrosolutions/riversCentralAsia",
+	"content": "Package with helper functions to load, manage and analyze hydrometeorological data from Central Asia"
 	},
-	"github/free1234hm/CLAM": {
-	"id": "github/free1234hm/CLAM",
-	"title": "github/free1234hm/CLAM",
-	"url": " https://rseng.github.io/software/repository/github/free1234hm/CLAM",
-	"content": "None"
+	"github/PDBeurope/pdb-images": {
+	"id": "github/PDBeurope/pdb-images",
+	"title": "github/PDBeurope/pdb-images",
+	"url": " https://rseng.github.io/software/repository/github/PDBeurope/pdb-images",
+	"content": "Generates images from mmCIF/BCIF files"
 	},
-	"github/mr-superonion/FPFS": {
-	"id": "github/mr-superonion/FPFS",
-	"title": "github/mr-superonion/FPFS",
-	"url": " https://rseng.github.io/software/repository/github/mr-superonion/FPFS",
-	"content": "A fast, accurate estimator for small shear distortion."
+	"github/eldariont/svim": {
+	"id": "github/eldariont/svim",
+	"title": "github/eldariont/svim",
+	"url": " https://rseng.github.io/software/repository/github/eldariont/svim",
+	"content": "Structural Variant Identification Method using Long Reads"
 	},
-	"github/davidgardenier/frbcat": {
-	"id": "github/davidgardenier/frbcat",
-	"title": "github/davidgardenier/frbcat",
-	"url": " https://rseng.github.io/software/repository/github/davidgardenier/frbcat",
-	"content": "Query Fast Radio Burst catalogues"
+	"github/nedRad88/SCALAR": {
+	"id": "github/nedRad88/SCALAR",
+	"title": "github/nedRad88/SCALAR",
+	"url": " https://rseng.github.io/software/repository/github/nedRad88/SCALAR",
+	"content": "SCALAR - Streaming ChALlenge plAtfoRm"
 	},
-	"github/davidgardenier/frbpoppy": {
-	"id": "github/davidgardenier/frbpoppy",
-	"title": "github/davidgardenier/frbpoppy",
-	"url": " https://rseng.github.io/software/repository/github/davidgardenier/frbpoppy",
-	"content": "Fast Radio Burst Population Synthesis in Python"
+	"github/pmaxted/pycheops": {
+	"id": "github/pmaxted/pycheops",
+	"title": "github/pmaxted/pycheops",
+	"url": " https://rseng.github.io/software/repository/github/pmaxted/pycheops",
+	"content": "Python module for the analysis of light curves from the ESA Cheops mission"
 	},
-	"github/raphael-group/hatchet": {
-	"id": "github/raphael-group/hatchet",
-	"title": "github/raphael-group/hatchet",
-	"url": " https://rseng.github.io/software/repository/github/raphael-group/hatchet",
-	"content": "HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, and that leverages the relationships between clones in these samples."
+	"github/10XGenomics/bamtofastq": {
+	"id": "github/10XGenomics/bamtofastq",
+	"title": "github/10XGenomics/bamtofastq",
+	"url": " https://rseng.github.io/software/repository/github/10XGenomics/bamtofastq",
+	"content": "Convert 10x BAM files to the original FASTQs compatible with 10x pipelines"
 	},
-	"github/uclchem/Chemulator": {
-	"id": "github/uclchem/Chemulator",
-	"title": "github/uclchem/Chemulator",
-	"url": " https://rseng.github.io/software/repository/github/uclchem/Chemulator",
-	"content": "The thermochemical emulator for hydrodynamical modelling"
+	"github/cosmo-ethz/hide": {
+	"id": "github/cosmo-ethz/hide",
+	"title": "github/cosmo-ethz/hide",
+	"url": " https://rseng.github.io/software/repository/github/cosmo-ethz/hide",
+	"content": "A package for simulating of a single dish radio telescope survey"
 	},
-	"github/Materials-Consortia/optimade-python-tools": {
-	"id": "github/Materials-Consortia/optimade-python-tools",
-	"title": "github/Materials-Consortia/optimade-python-tools",
-	"url": " https://rseng.github.io/software/repository/github/Materials-Consortia/optimade-python-tools",
-	"content": "Tools for implementing and consuming OPTIMADE APIs in Python"
+	"github/cosmo-ethz/seek": {
+	"id": "github/cosmo-ethz/seek",
+	"title": "github/cosmo-ethz/seek",
+	"url": " https://rseng.github.io/software/repository/github/cosmo-ethz/seek",
+	"content": "A flexible and easy-to-extend data processing pipeline for single dish radio telescopes"
 	},
-	"github/Materials-Consortia/OPTIMADE-Filter": {
-	"id": "github/Materials-Consortia/OPTIMADE-Filter",
-	"title": "github/Materials-Consortia/OPTIMADE-Filter",
-	"url": " https://rseng.github.io/software/repository/github/Materials-Consortia/OPTIMADE-Filter",
-	"content": "OPTIMADE filter language parser in Perl"
+	"github/cosmo-ethz/CosmoHammer": {
+	"id": "github/cosmo-ethz/CosmoHammer",
+	"title": "github/cosmo-ethz/CosmoHammer",
+	"url": " https://rseng.github.io/software/repository/github/cosmo-ethz/CosmoHammer",
+	"content": "Cosmological parameter estimation with the MCMC Hammer, please use https://cosmo-gitlab.phys.ethz.ch/cosmo/CosmoHammer, this repository is outdated ! Docs at http://cosmo-docs.phys.ethz.ch/cosmoHammer/"
 	},
-	"github/pmelchior/scarlet": {
-	"id": "github/pmelchior/scarlet",
-	"title": "github/pmelchior/scarlet",
-	"url": " https://rseng.github.io/software/repository/github/pmelchior/scarlet",
-	"content": "hyperspectral galaxy modeling and deblending"
+	"github/dlakaplan/pulsarsurveyscraper": {
+	"id": "github/dlakaplan/pulsarsurveyscraper",
+	"title": "github/dlakaplan/pulsarsurveyscraper",
+	"url": " https://rseng.github.io/software/repository/github/dlakaplan/pulsarsurveyscraper",
+	"content": "None"
 	},
-	"github/pmelchior/skylens": {
-	"id": "github/pmelchior/skylens",
-	"title": "github/pmelchior/skylens",
-	"url": " https://rseng.github.io/software/repository/github/pmelchior/skylens",
-	"content": "SkyLens++ is a simulation package for optical astronomical observations."
+	"github/Social-Evolution-and-Behavior/anTraX": {
+	"id": "github/Social-Evolution-and-Behavior/anTraX",
+	"title": "github/Social-Evolution-and-Behavior/anTraX",
+	"url": " https://rseng.github.io/software/repository/github/Social-Evolution-and-Behavior/anTraX",
+	"content": "anTraX: high throughput tracking of color-tagged insects"
 	},
-	"github/pmelchior/skymapper": {
-	"id": "github/pmelchior/skymapper",
-	"title": "github/pmelchior/skymapper",
-	"url": " https://rseng.github.io/software/repository/github/pmelchior/skymapper",
-	"content": "Mapping astronomical survey data on the sky, handsomely"
+	"github/Azeret/galIMF": {
+	"id": "github/Azeret/galIMF",
+	"title": "github/Azeret/galIMF",
+	"url": " https://rseng.github.io/software/repository/github/Azeret/galIMF",
+	"content": "Based on : Yan, Jerabkova and Kroupa (2017, A&amp;A) and Yan, Jerabkova, Kroupa and Vazdekis (2019, A&amp;A): a Python3 module for computing the galaxy-wide initiall stellar mass function by integrating over a whole galaxy, parametrised by star formation rate and metallicity. "
 	},
-	"github/pmelchior/des-exp-checker": {
-	"id": "github/pmelchior/des-exp-checker",
-	"title": "github/pmelchior/des-exp-checker",
-	"url": " https://rseng.github.io/software/repository/github/pmelchior/des-exp-checker",
-	"content": "Crowdsourced image quality control for the Dark Energy Survey"
+	"github/an0wen/MARDIGRAS": {
+	"id": "github/an0wen/MARDIGRAS",
+	"title": "github/an0wen/MARDIGRAS",
+	"url": " https://rseng.github.io/software/repository/github/an0wen/MARDIGRAS",
+	"content": "MAss-Radius DIaGRAm with Sliders"
 	},
-	"github/pmelchior/shapelens": {
-	"id": "github/pmelchior/shapelens",
-	"title": "github/pmelchior/shapelens",
-	"url": " https://rseng.github.io/software/repository/github/pmelchior/shapelens",
-	"content": "Astronomical image analysis and shape estimation framework"
+	"github/igmhub/picca": {
+	"id": "github/igmhub/picca",
+	"title": "github/igmhub/picca",
+	"url": " https://rseng.github.io/software/repository/github/igmhub/picca",
+	"content": "set of tools for continuum fitting, correlation function calculation, cosmological fits..."
 	},
-	"github/pmelchior/pyGMMis": {
-	"id": "github/pmelchior/pyGMMis",
-	"title": "github/pmelchior/pyGMMis",
-	"url": " https://rseng.github.io/software/repository/github/pmelchior/pyGMMis",
-	"content": "Gaussian mixture model for incomplete (missing or truncated) and noisy data"
+	"github/igmhub/baofit": {
+	"id": "github/igmhub/baofit",
+	"title": "github/igmhub/baofit",
+	"url": " https://rseng.github.io/software/repository/github/igmhub/baofit",
+	"content": "Fits cosmological data to measure baryon acoustic oscillations."
 	},
-	"github/pmelchior/spender": {
-	"id": "github/pmelchior/spender",
-	"title": "github/pmelchior/spender",
-	"url": " https://rseng.github.io/software/repository/github/pmelchior/spender",
-	"content": "Spectrum encoder and decoder"
+	"github/igmhub/LyaCoLoRe": {
+	"id": "github/igmhub/LyaCoLoRe",
+	"title": "github/igmhub/LyaCoLoRe",
+	"url": " https://rseng.github.io/software/repository/github/igmhub/LyaCoLoRe",
+	"content": "Code development to use CoLoRe simulations for generating simulated Lyman alpha forest spectra"
 	},
-	"github/pmelchior/epsnoise": {
-	"id": "github/pmelchior/epsnoise",
-	"title": "github/pmelchior/epsnoise",
-	"url": " https://rseng.github.io/software/repository/github/pmelchior/epsnoise",
-	"content": "Simulate pixel noise for weak-lensing ellipticity measurements"
+	"github/igmhub/ForestFlow": {
+	"id": "github/igmhub/ForestFlow",
+	"title": "github/igmhub/ForestFlow",
+	"url": " https://rseng.github.io/software/repository/github/igmhub/ForestFlow",
+	"content": "This code is a neural network emulator for the 3D flux power spectrum of the Lyman-alpha forest"
 	},
-	"github/pmelchior/shear-stacking": {
-	"id": "github/pmelchior/shear-stacking",
-	"title": "github/pmelchior/shear-stacking",
-	"url": " https://rseng.github.io/software/repository/github/pmelchior/shear-stacking",
-	"content": "Stacked shear profiles and tests based upon them"
+	"github/a-slide/pycoQC": {
+	"id": "github/a-slide/pycoQC",
+	"title": "github/a-slide/pycoQC",
+	"url": " https://rseng.github.io/software/repository/github/a-slide/pycoQC",
+	"content": "pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)"
 	},
-	"github/mlaparie/phidget-tools": {
-	"id": "github/mlaparie/phidget-tools",
-	"title": "github/mlaparie/phidget-tools",
-	"url": " https://rseng.github.io/software/repository/github/mlaparie/phidget-tools",
-	"content": "Terminal tools to record/monitor from Phidget 1048_1B USB-thermocouple devices"
+	"github/SotaYoshida/NuclearToolkit.jl": {
+	"id": "github/SotaYoshida/NuclearToolkit.jl",
+	"title": "github/SotaYoshida/NuclearToolkit.jl",
+	"url": " https://rseng.github.io/software/repository/github/SotaYoshida/NuclearToolkit.jl",
+	"content": "NuclearToolkit.jl: Julia package for nuclear structure calculations"
 	},
-	"github/mlaparie/sigh": {
-	"id": "github/mlaparie/sigh",
-	"title": "github/mlaparie/sigh",
-	"url": " https://rseng.github.io/software/repository/github/mlaparie/sigh",
-	"content": "sigh, a program to cure optimism and automatically scrape worldwide data about reported disaster and perturbation events."
+	"github/pennucci/PulsePortraiture": {
+	"id": "github/pennucci/PulsePortraiture",
+	"title": "github/pennucci/PulsePortraiture",
+	"url": " https://rseng.github.io/software/repository/github/pennucci/PulsePortraiture",
+	"content": "PulsePortraiture (PP): a wideband pulsar timing code written in python.  It uses an extension of Joe Taylor&#39;s FFTFIT algorithm (Taylor 1992) to simultaneously measure a phase (TOA) and dispersion measure (DM).  PSRCHIVE, lmfit, and the latest vertsions of numpy and scipy are required."
 	},
-	"github/vojtech-sidorin/quickclump": {
-	"id": "github/vojtech-sidorin/quickclump",
-	"title": "github/vojtech-sidorin/quickclump",
-	"url": " https://rseng.github.io/software/repository/github/vojtech-sidorin/quickclump",
-	"content": "Identify clumps within a 3D FITS datacube."
+	"github/nansencenter/DAPPER": {
+	"id": "github/nansencenter/DAPPER",
+	"title": "github/nansencenter/DAPPER",
+	"url": " https://rseng.github.io/software/repository/github/nansencenter/DAPPER",
+	"content": "Data Assimilation with Python: a Package for Experimental Research"
 	},
-	"github/mpeel/fastcc": {
-	"id": "github/mpeel/fastcc",
-	"title": "github/mpeel/fastcc",
-	"url": " https://rseng.github.io/software/repository/github/mpeel/fastcc",
-	"content": "Fast colour corrections for Planck/WMAP/QUIJOTE etc."
+	"github/JIBSIL/DistriFS": {
+	"id": "github/JIBSIL/DistriFS",
+	"title": "github/JIBSIL/DistriFS",
+	"url": " https://rseng.github.io/software/repository/github/JIBSIL/DistriFS",
+	"content": "Distributed, efficient and secure filesystem coded in Go"
 	},
-	"github/LalResearchGroup/CNV-clinviewer": {
-	"id": "github/LalResearchGroup/CNV-clinviewer",
-	"title": "github/LalResearchGroup/CNV-clinviewer",
-	"url": " https://rseng.github.io/software/repository/github/LalResearchGroup/CNV-clinviewer",
-	"content": "None"
+	"github/EMBL-Hentze-group/htseq-clip": {
+	"id": "github/EMBL-Hentze-group/htseq-clip",
+	"title": "github/EMBL-Hentze-group/htseq-clip",
+	"url": " https://rseng.github.io/software/repository/github/EMBL-Hentze-group/htseq-clip",
+	"content": "a toolset designed for the processing and analysis of eCLIP/iCLIP dataset"
 	},
-	"github/PathwayCommons/grounding-search": {
-	"id": "github/PathwayCommons/grounding-search",
-	"title": "github/PathwayCommons/grounding-search",
-	"url": " https://rseng.github.io/software/repository/github/PathwayCommons/grounding-search",
-	"content": "A biological entity grounding search service "
+	"github/astromb/PICsar2D": {
+	"id": "github/astromb/PICsar2D",
+	"title": "github/astromb/PICsar2D",
+	"url": " https://rseng.github.io/software/repository/github/astromb/PICsar2D",
+	"content": "Particle In Cell pulSAR code"
 	},
-	"github/cpiaulet/smint": {
-	"id": "github/cpiaulet/smint",
-	"title": "github/cpiaulet/smint",
-	"url": " https://rseng.github.io/software/repository/github/cpiaulet/smint",
-	"content": "Planet structure model interpolator"
+	"github/acerbilab/pybads": {
+	"id": "github/acerbilab/pybads",
+	"title": "github/acerbilab/pybads",
+	"url": " https://rseng.github.io/software/repository/github/acerbilab/pybads",
+	"content": "PyBADS: Bayesian Adaptive Direct Search optimization algorithm for model fitting in Python"
 	},
-	"github/QZH2022/germline_flow": {
-	"id": "github/QZH2022/germline_flow",
-	"title": "github/QZH2022/germline_flow",
-	"url": " https://rseng.github.io/software/repository/github/QZH2022/germline_flow",
+	"github/AstroUGent/shadowfax": {
+	"id": "github/AstroUGent/shadowfax",
+	"title": "github/AstroUGent/shadowfax",
+	"url": " https://rseng.github.io/software/repository/github/AstroUGent/shadowfax",
+	"content": "A public moving mesh hydrodynamical integration code, including gravity and a collisionless component."
+	},
+	"github/U-Alberta/ADaPT-ML": {
+	"id": "github/U-Alberta/ADaPT-ML",
+	"title": "github/U-Alberta/ADaPT-ML",
+	"url": " https://rseng.github.io/software/repository/github/U-Alberta/ADaPT-ML",
 	"content": "None"
 	},
-	"github/rvaser/bioparser": {
-	"id": "github/rvaser/bioparser",
-	"title": "github/rvaser/bioparser",
-	"url": " https://rseng.github.io/software/repository/github/rvaser/bioparser",
-	"content": "C++ library for parsing several formats in bioinformatics"
+	"github/MarkMageeAstro/Riddler": {
+	"id": "github/MarkMageeAstro/Riddler",
+	"title": "github/MarkMageeAstro/Riddler",
+	"url": " https://rseng.github.io/software/repository/github/MarkMageeAstro/Riddler",
+	"content": "None"
 	},
-	"github/rvaser/rampler": {
-	"id": "github/rvaser/rampler",
-	"title": "github/rvaser/rampler",
-	"url": " https://rseng.github.io/software/repository/github/rvaser/rampler",
-	"content": "module for sampling genomic sequences"
+	"github/simonsobs/nemo": {
+	"id": "github/simonsobs/nemo",
+	"title": "github/simonsobs/nemo",
+	"url": " https://rseng.github.io/software/repository/github/simonsobs/nemo",
+	"content": "Millimeter-wave map filtering and Sunyaev-Zel&#39;dovich galaxy cluster/source detection package. Originally developed for the Atacama Cosmology Telescope project."
 	},
-	"github/rvaser/sword": {
-	"id": "github/rvaser/sword",
-	"title": "github/rvaser/sword",
-	"url": " https://rseng.github.io/software/repository/github/rvaser/sword",
-	"content": "SWORD - a highly efficient protein database search"
+	"github/simonsobs/pixell": {
+	"id": "github/simonsobs/pixell",
+	"title": "github/simonsobs/pixell",
+	"url": " https://rseng.github.io/software/repository/github/simonsobs/pixell",
+	"content": "A rectangular pixel map manipulation and harmonic analysis library derived from Sigurd Naess&#39; enlib."
 	},
-	"github/rvaser/spoa": {
-	"id": "github/rvaser/spoa",
-	"title": "github/rvaser/spoa",
-	"url": " https://rseng.github.io/software/repository/github/rvaser/spoa",
-	"content": "SIMD partial order alignment tool/library"
+	"github/simonsobs/so_noise_models": {
+	"id": "github/simonsobs/so_noise_models",
+	"title": "github/simonsobs/so_noise_models",
+	"url": " https://rseng.github.io/software/repository/github/simonsobs/so_noise_models",
+	"content": "Simons Observatory N(ell) noise models for public release"
 	},
-	"github/rvaser/thread_pool": {
-	"id": "github/rvaser/thread_pool",
-	"title": "github/rvaser/thread_pool",
-	"url": " https://rseng.github.io/software/repository/github/rvaser/thread_pool",
-	"content": "C++ thread pool library"
+	"github/simonsobs/mnms": {
+	"id": "github/simonsobs/mnms",
+	"title": "github/simonsobs/mnms",
+	"url": " https://rseng.github.io/software/repository/github/simonsobs/mnms",
+	"content": "Generate map-based noise models and noise simulations."
 	},
-	"github/giswqs/lidar": {
-	"id": "github/giswqs/lidar",
-	"title": "github/giswqs/lidar",
-	"url": " https://rseng.github.io/software/repository/github/giswqs/lidar",
-	"content": "A Python package for delineating nested surface depressions from digital elevation data."
+	"github/sdnjly/WSDL-AD": {
+	"id": "github/sdnjly/WSDL-AD",
+	"title": "github/sdnjly/WSDL-AD",
+	"url": " https://rseng.github.io/software/repository/github/sdnjly/WSDL-AD",
+	"content": "None"
 	},
-	"github/giswqs/leafmap": {
-	"id": "github/giswqs/leafmap",
-	"title": "github/giswqs/leafmap",
-	"url": " https://rseng.github.io/software/repository/github/giswqs/leafmap",
-	"content": "A Python package for interactive mapping and geospatial analysis  with minimal coding in a Jupyter environment"
+	"github/COSIMA/regional-mom6": {
+	"id": "github/COSIMA/regional-mom6",
+	"title": "github/COSIMA/regional-mom6",
+	"url": " https://rseng.github.io/software/repository/github/COSIMA/regional-mom6",
+	"content": "Automatic generation of regional configurations of the Modular Ocean Model 6 (MOM6) in Python"
 	},
-	"github/giswqs/geemap": {
-	"id": "github/giswqs/geemap",
-	"title": "github/giswqs/geemap",
-	"url": " https://rseng.github.io/software/repository/github/giswqs/geemap",
-	"content": "A Python package for interactive mapping with Google Earth Engine, ipyleaflet, and ipywidgets"
+	"github/soilwater/crnpy": {
+	"id": "github/soilwater/crnpy",
+	"title": "github/soilwater/crnpy",
+	"url": " https://rseng.github.io/software/repository/github/soilwater/crnpy",
+	"content": "A Python toolbox for handling common tasks with cosmic-ray neutron probes"
 	},
-	"github/CaymanUnterborn/ExoPlex": {
-	"id": "github/CaymanUnterborn/ExoPlex",
-	"title": "github/CaymanUnterborn/ExoPlex",
-	"url": " https://rseng.github.io/software/repository/github/CaymanUnterborn/ExoPlex",
-	"content": "A thermodynamically self-consistent mass-radius-composition calculator"
+	"github/GoekeLab/xpore": {
+	"id": "github/GoekeLab/xpore",
+	"title": "github/GoekeLab/xpore",
+	"url": " https://rseng.github.io/software/repository/github/GoekeLab/xpore",
+	"content": "Identification of differential RNA modifications from nanopore direct RNA sequencing"
 	},
-	"github/freqtrade/freqtrade": {
-	"id": "github/freqtrade/freqtrade",
-	"title": "github/freqtrade/freqtrade",
-	"url": " https://rseng.github.io/software/repository/github/freqtrade/freqtrade",
-	"content": "Free, open source crypto trading bot"
+	"github/Chenmi0619/GALMoss": {
+	"id": "github/Chenmi0619/GALMoss",
+	"title": "github/Chenmi0619/GALMoss",
+	"url": " https://rseng.github.io/software/repository/github/Chenmi0619/GALMoss",
+	"content": "a galaxy surface bightness fitting code via gradient descent"
 	},
-	"github/SynthSys/pyOmeroUpload": {
-	"id": "github/SynthSys/pyOmeroUpload",
-	"title": "github/SynthSys/pyOmeroUpload",
-	"url": " https://rseng.github.io/software/repository/github/SynthSys/pyOmeroUpload",
-	"content": "Project for uploading local file structure into OMERO database"
+	"github/tfwillems/HipSTR": {
+	"id": "github/tfwillems/HipSTR",
+	"title": "github/tfwillems/HipSTR",
+	"url": " https://rseng.github.io/software/repository/github/tfwillems/HipSTR",
+	"content": "Genotype and phase short tandem repeats using Illumina whole-genome sequencing data"
 	},
-	"github/OnroerendErfgoed/atramhasis": {
-	"id": "github/OnroerendErfgoed/atramhasis",
-	"title": "github/OnroerendErfgoed/atramhasis",
-	"url": " https://rseng.github.io/software/repository/github/OnroerendErfgoed/atramhasis",
-	"content": "An online SKOS editor"
+	"github/david-barnett/microViz": {
+	"id": "github/david-barnett/microViz",
+	"title": "github/david-barnett/microViz",
+	"url": " https://rseng.github.io/software/repository/github/david-barnett/microViz",
+	"content": "R package for microbiome data visualization. Uses phyloseq, vegan and tidyverse. See website link for docs with visual examples. Docker image available."
 	},
-	"github/bokeh/bokeh": {
-	"id": "github/bokeh/bokeh",
-	"title": "github/bokeh/bokeh",
-	"url": " https://rseng.github.io/software/repository/github/bokeh/bokeh",
-	"content": "Interactive Data Visualization in the browser, from  Python"
+	"github/calboo/Potential_Field_Calculator": {
+	"id": "github/calboo/Potential_Field_Calculator",
+	"title": "github/calboo/Potential_Field_Calculator",
+	"url": " https://rseng.github.io/software/repository/github/calboo/Potential_Field_Calculator",
+	"content": "A collection of codes for generating and visualising potential magnetic fields. If this numerical code is used, authors kindly request an acknowledgment via citation of paper https://www.aanda.org/articles/aa/full_html/2019/05/aa34684-18/aa34684-18.html"
 	},
-	"github/sonjageorgievska/CClusTera": {
-	"id": "github/sonjageorgievska/CClusTera",
-	"title": "github/sonjageorgievska/CClusTera",
-	"url": " https://rseng.github.io/software/repository/github/sonjageorgievska/CClusTera",
-	"content": "A javascript library for interactive hierarchical visualization of 3D points (suitable for large hierarchical datasets) . Based on graphosaurus.js (https://github.com/frewsxcv/graphosaurus), which runs on Three.js. "
+	"github/calboo/wigglewave": {
+	"id": "github/calboo/wigglewave",
+	"title": "github/calboo/wigglewave",
+	"url": " https://rseng.github.io/software/repository/github/calboo/wigglewave",
+	"content": "Wigglewave is a FORTRAN code that uses an RK4 finite difference method to solve the linearised governing equations for Torsional Alfvén Waves (TAWs) propagating in a plasma with negligible plasma beta and in a force-free axisymmetric magnetic field, with no azimuthal component, embedded in a high density divergent tube structure."
 	},
-	"github/circuitgraph/circuitgraph": {
-	"id": "github/circuitgraph/circuitgraph",
-	"title": "github/circuitgraph/circuitgraph",
-	"url": " https://rseng.github.io/software/repository/github/circuitgraph/circuitgraph",
-	"content": "Tools for working with circuits as graphs in python"
+	"github/calboo/TAWAS": {
+	"id": "github/calboo/TAWAS",
+	"title": "github/calboo/TAWAS",
+	"url": " https://rseng.github.io/software/repository/github/calboo/TAWAS",
+	"content": "TAWAS is an IDL script for solving the wave equation for torsional Alfvèn waves in a viscous plasma. The background magnetic field is axisymmetric and force-free with no azimuthal component and the plasma beta is assumed to be negligable. The solution is calculated using the analytical formula presented in https://academic.oup.com/mnras/article-abstract/510/2/1910/6449388?redirectedFrom=fulltext. "
 	},
-	"github/brunettsp/myosothes": {
-	"id": "github/brunettsp/myosothes",
-	"title": "github/brunettsp/myosothes",
-	"url": " https://rseng.github.io/software/repository/github/brunettsp/myosothes",
-	"content": "An automated Myofibers Segmentation wOrkflow Tuned for HE Staining"
+	"github/UUDigitalHumanitieslab/texcavator": {
+	"id": "github/UUDigitalHumanitieslab/texcavator",
+	"title": "github/UUDigitalHumanitieslab/texcavator",
+	"url": " https://rseng.github.io/software/repository/github/UUDigitalHumanitieslab/texcavator",
+	"content": "Text mining on the Royal Library newspaper corpus"
 	},
-	"github/extendr/extendr": {
-	"id": "github/extendr/extendr",
-	"title": "github/extendr/extendr",
-	"url": " https://rseng.github.io/software/repository/github/extendr/extendr",
-	"content": "R extension library for rust designed to be familiar to R users."
+	"github/bluefoxr/COINr": {
+	"id": "github/bluefoxr/COINr",
+	"title": "github/bluefoxr/COINr",
+	"url": " https://rseng.github.io/software/repository/github/bluefoxr/COINr",
+	"content": "COINr"
 	},
-	"github/arshajii/ema": {
-	"id": "github/arshajii/ema",
-	"title": "github/arshajii/ema",
-	"url": " https://rseng.github.io/software/repository/github/arshajii/ema",
-	"content": "Fast &amp; accurate alignment of barcoded short-reads"
+	"github/Wytamma/snk": {
+	"id": "github/Wytamma/snk",
+	"title": "github/Wytamma/snk",
+	"url": " https://rseng.github.io/software/repository/github/Wytamma/snk",
+	"content": "Snakemake workflow management system and CLI generation tool"
 	},
-	"github/citation-file-format/citation-file-format": {
-	"id": "github/citation-file-format/citation-file-format",
-	"title": "github/citation-file-format/citation-file-format",
-	"url": " https://rseng.github.io/software/repository/github/citation-file-format/citation-file-format",
-	"content": "The Citation File Format lets you provide citation metadata for software or datasets in plaintext files that are easy to read by both humans and machines."
+	"github/bessagroup/f3dasm": {
+	"id": "github/bessagroup/f3dasm",
+	"title": "github/bessagroup/f3dasm",
+	"url": " https://rseng.github.io/software/repository/github/bessagroup/f3dasm",
+	"content": "Framework for Data-Driven Design &amp; Analysis of Structures &amp; Materials (F3DASM)"
 	},
-	"github/citation-file-format/cff-initializer-javascript": {
-	"id": "github/citation-file-format/cff-initializer-javascript",
-	"title": "github/citation-file-format/cff-initializer-javascript",
-	"url": " https://rseng.github.io/software/repository/github/citation-file-format/cff-initializer-javascript",
-	"content": "Web form to initialize CITATION.cff files."
+	"github/hz1010/FIPRESCI_data_analysis": {
+	"id": "github/hz1010/FIPRESCI_data_analysis",
+	"title": "github/hz1010/FIPRESCI_data_analysis",
+	"url": " https://rseng.github.io/software/repository/github/hz1010/FIPRESCI_data_analysis",
+	"content": "Code for FIPERSCI data"
 	},
-	"github/citation-file-format/cff-converter-python": {
-	"id": "github/citation-file-format/cff-converter-python",
-	"title": "github/citation-file-format/cff-converter-python",
-	"url": " https://rseng.github.io/software/repository/github/citation-file-format/cff-converter-python",
-	"content": "Command line utility to read CITATION.cff file from a GitHub url or local file and convert it to BibTex and other formats."
+	"github/rpetit3/fastq-dl": {
+	"id": "github/rpetit3/fastq-dl",
+	"title": "github/rpetit3/fastq-dl",
+	"url": " https://rseng.github.io/software/repository/github/rpetit3/fastq-dl",
+	"content": "Download FASTQ files from SRA or ENA repositories."
 	},
-	"github/citation-file-format/cffconvert-github-action": {
-	"id": "github/citation-file-format/cffconvert-github-action",
-	"title": "github/citation-file-format/cffconvert-github-action",
-	"url": " https://rseng.github.io/software/repository/github/citation-file-format/cffconvert-github-action",
-	"content": "GitHub action to validate CITATION.cff files, and convert to other citation formats."
+	"github/rpetit3/fastq-scan": {
+	"id": "github/rpetit3/fastq-scan",
+	"title": "github/rpetit3/fastq-scan",
+	"url": " https://rseng.github.io/software/repository/github/rpetit3/fastq-scan",
+	"content": "Output FASTQ summary statistics in JSON format"
 	},
-	"github/ChenfuShi/HiChIP_peaks": {
-	"id": "github/ChenfuShi/HiChIP_peaks",
-	"title": "github/ChenfuShi/HiChIP_peaks",
-	"url": " https://rseng.github.io/software/repository/github/ChenfuShi/HiChIP_peaks",
-	"content": "A tool to analyse HiChIP data"
+	"github/Basvanstein/GSAreport": {
+	"id": "github/Basvanstein/GSAreport",
+	"title": "github/Basvanstein/GSAreport",
+	"url": " https://rseng.github.io/software/repository/github/Basvanstein/GSAreport",
+	"content": "Global Sensitivity reporting for Explainable AI"
 	},
-	"github/MikeSWang/Triumvirate": {
-	"id": "github/MikeSWang/Triumvirate",
-	"title": "github/MikeSWang/Triumvirate",
-	"url": " https://rseng.github.io/software/repository/github/MikeSWang/Triumvirate",
-	"content": "A Python/C++ package for three-point clustering measurements in LSS analyses"
+	"github/CNIC-Proteomics/TurboPutative-web": {
+	"id": "github/CNIC-Proteomics/TurboPutative-web",
+	"title": "github/CNIC-Proteomics/TurboPutative-web",
+	"url": " https://rseng.github.io/software/repository/github/CNIC-Proteomics/TurboPutative-web",
+	"content": "None"
 	},
-	"github/MikeSWang/Harmonia": {
-	"id": "github/MikeSWang/Harmonia",
-	"title": "github/MikeSWang/Harmonia",
-	"url": " https://rseng.github.io/software/repository/github/MikeSWang/Harmonia",
-	"content": "Hybrid-basis inference for large-scale galaxy clustering"
+	"github/vergauwenthomas/MetObs_toolkit": {
+	"id": "github/vergauwenthomas/MetObs_toolkit",
+	"title": "github/vergauwenthomas/MetObs_toolkit",
+	"url": " https://rseng.github.io/software/repository/github/vergauwenthomas/MetObs_toolkit",
+	"content": "A toolkit for using non-traditional meteorological observations"
 	},
-	"github/MikeSWang/HorizonGRound": {
-	"id": "github/MikeSWang/HorizonGRound",
-	"title": "github/MikeSWang/HorizonGRound",
-	"url": " https://rseng.github.io/software/repository/github/MikeSWang/HorizonGRound",
-	"content": "Relativistic effects in ultra-large-scale galaxy clustering"
+	"github/merenlab/anvio": {
+	"id": "github/merenlab/anvio",
+	"title": "github/merenlab/anvio",
+	"url": " https://rseng.github.io/software/repository/github/merenlab/anvio",
+	"content": "An analysis and visualization platform for &#39;omics data"
 	},
-	"github/amiralih/MembraneAnalysis.jl": {
-	"id": "github/amiralih/MembraneAnalysis.jl",
-	"title": "github/amiralih/MembraneAnalysis.jl",
-	"url": " https://rseng.github.io/software/repository/github/amiralih/MembraneAnalysis.jl",
-	"content": "A package for analyzing molecular dynamics simulations of lipid membranes"
+	"github/jkbonfield/io_lib": {
+	"id": "github/jkbonfield/io_lib",
+	"title": "github/jkbonfield/io_lib",
+	"url": " https://rseng.github.io/software/repository/github/jkbonfield/io_lib",
+	"content": "Staden Package &#34;io_lib&#34; (sometimes referred to as libstaden-read by distributions).    This contains code for reading and writing a variety of Bioinformatics / DNA Sequence formats."
 	},
-	"github/iain-mcdonald/PySSED": {
-	"id": "github/iain-mcdonald/PySSED",
-	"title": "github/iain-mcdonald/PySSED",
-	"url": " https://rseng.github.io/software/repository/github/iain-mcdonald/PySSED",
-	"content": "None"
+	"github/jkbonfield/crumble": {
+	"id": "github/jkbonfield/crumble",
+	"title": "github/jkbonfield/crumble",
+	"url": " https://rseng.github.io/software/repository/github/jkbonfield/crumble",
+	"content": "controllable lossy compression of BAM/CRAM files."
 	},
-	"github/cosmostat/pmclib": {
-	"id": "github/cosmostat/pmclib",
-	"title": "github/cosmostat/pmclib",
-	"url": " https://rseng.github.io/software/repository/github/cosmostat/pmclib",
-	"content": "Population Monte Carlo (PMC) library"
+	"github/jkbonfield/htscodecs": {
+	"id": "github/jkbonfield/htscodecs",
+	"title": "github/jkbonfield/htscodecs",
+	"url": " https://rseng.github.io/software/repository/github/jkbonfield/htscodecs",
+	"content": "Custom compression for CRAM and others."
 	},
-	"github/cosmostat/nicaea": {
-	"id": "github/cosmostat/nicaea",
-	"title": "github/cosmostat/nicaea",
-	"url": " https://rseng.github.io/software/repository/github/cosmostat/nicaea",
-	"content": "Numerical routines to calculate cosmology and weak-lensing quantities."
+	"github/ccsb-scripps/Illustrate": {
+	"id": "github/ccsb-scripps/Illustrate",
+	"title": "github/ccsb-scripps/Illustrate",
+	"url": " https://rseng.github.io/software/repository/github/ccsb-scripps/Illustrate",
+	"content": "Biomolecular Illustration Tool"
 	},
-	"github/cosmostat/CosmoPMC": {
-	"id": "github/cosmostat/CosmoPMC",
-	"title": "github/cosmostat/CosmoPMC",
-	"url": " https://rseng.github.io/software/repository/github/cosmostat/CosmoPMC",
-	"content": "Cosmology sampling with Population Monte Carlo (PMC)"
+	"github/parafields/parafields": {
+	"id": "github/parafields/parafields",
+	"title": "github/parafields/parafields",
+	"url": " https://rseng.github.io/software/repository/github/parafields/parafields",
+	"content": "Parallel Parameter Field Generator for Python"
 	},
-	"github/natelust/least_asymmetry": {
-	"id": "github/natelust/least_asymmetry",
-	"title": "github/natelust/least_asymmetry",
-	"url": " https://rseng.github.io/software/repository/github/natelust/least_asymmetry",
-	"content": "This code is to find the center of a distribution of light in an image using the least asymmetry method. The code also contains center of light and fitting a Gaussian routines as well. All functions are designed to take optional weights"
+	"github/alvinxhan/Phydelity": {
+	"id": "github/alvinxhan/Phydelity",
+	"title": "github/alvinxhan/Phydelity",
+	"url": " https://rseng.github.io/software/repository/github/alvinxhan/Phydelity",
+	"content": "Inference of putative transmission phylogenetic clusters"
 	},
-	"github/idefix-code/idefix": {
-	"id": "github/idefix-code/idefix",
-	"title": "github/idefix-code/idefix",
-	"url": " https://rseng.github.io/software/repository/github/idefix-code/idefix",
-	"content": "Idefix source code for astrophysical fluid dynamics"
+	"github/jonzink/EDI-Vetter": {
+	"id": "github/jonzink/EDI-Vetter",
+	"title": "github/jonzink/EDI-Vetter",
+	"url": " https://rseng.github.io/software/repository/github/jonzink/EDI-Vetter",
+	"content": "The (Exoplanet Detection Identifier) EDI-Vetter is the rock&#39;n roll love child of Terra and RoboVetter, optimized to vet K2 transit signals."
 	},
-	"github/nemesiscode/radtrancode": {
-	"id": "github/nemesiscode/radtrancode",
-	"title": "github/nemesiscode/radtrancode",
-	"url": " https://rseng.github.io/software/repository/github/nemesiscode/radtrancode",
-	"content": "This is the repository of the NEMESIS/RADTRANS project. It is described on the associated web page listed here."
+	"github/jonzink/EDI_Vetter_unplugged": {
+	"id": "github/jonzink/EDI_Vetter_unplugged",
+	"title": "github/jonzink/EDI_Vetter_unplugged",
+	"url": " https://rseng.github.io/software/repository/github/jonzink/EDI_Vetter_unplugged",
+	"content": "A compact version of EDI-Vetter, which uses the TLS output to quickly vet transit signals. All your favorite hits in a simplified format."
 	},
-	"github/lab-medvedeva/GADES-main": {
-	"id": "github/lab-medvedeva/GADES-main",
-	"title": "github/lab-medvedeva/GADES-main",
-	"url": " https://rseng.github.io/software/repository/github/lab-medvedeva/GADES-main",
-	"content": "None"
+	"github/sanctuuary/ape": {
+	"id": "github/sanctuuary/ape",
+	"title": "github/sanctuuary/ape",
+	"url": " https://rseng.github.io/software/repository/github/sanctuuary/ape",
+	"content": "APE (Automated Pipeline Explorer)"
 	},
-	"github/abs2k12/COCOA": {
-	"id": "github/abs2k12/COCOA",
-	"title": "github/abs2k12/COCOA",
-	"url": " https://rseng.github.io/software/repository/github/abs2k12/COCOA",
-	"content": "COCOA Code for Simulating Observations of Star Cluster Simulations"
+	"github/LuisScoccola/persistable": {
+	"id": "github/LuisScoccola/persistable",
+	"title": "github/LuisScoccola/persistable",
+	"url": " https://rseng.github.io/software/repository/github/LuisScoccola/persistable",
+	"content": "density-based clustering for exploratory data analysis based on multi-parameter persistence"
 	},
-	"github/klevis-a/kinematics-vis": {
-	"id": "github/klevis-a/kinematics-vis",
-	"title": "github/klevis-a/kinematics-vis",
-	"url": " https://rseng.github.io/software/repository/github/klevis-a/kinematics-vis",
-	"content": "JavaScript application for visualizing and analyzing shoulder joint kinematics"
+	"github/nell-byler/cloudyfsps": {
+	"id": "github/nell-byler/cloudyfsps",
+	"title": "github/nell-byler/cloudyfsps",
+	"url": " https://rseng.github.io/software/repository/github/nell-byler/cloudyfsps",
+	"content": "Python interface between FSPS and Cloudy."
 	},
-	"github/tpospisi/nnkcde": {
-	"id": "github/tpospisi/nnkcde",
-	"title": "github/tpospisi/nnkcde",
-	"url": " https://rseng.github.io/software/repository/github/tpospisi/nnkcde",
-	"content": "Nearest Neighbor Kernel Conditional Density Estimation"
+	"github/Ajstros/pyripherals": {
+	"id": "github/Ajstros/pyripherals",
+	"title": "github/Ajstros/pyripherals",
+	"url": " https://rseng.github.io/software/repository/github/Ajstros/pyripherals",
+	"content": "Python solution for communicating with peripheral ICs"
 	},
-	"github/tpospisi/RFCDE": {
-	"id": "github/tpospisi/RFCDE",
-	"title": "github/tpospisi/RFCDE",
-	"url": " https://rseng.github.io/software/repository/github/tpospisi/RFCDE",
-	"content": "Random Forests for Conditional Density Estimation"
+	"github/miRTop/mirtop": {
+	"id": "github/miRTop/mirtop",
+	"title": "github/miRTop/mirtop",
+	"url": " https://rseng.github.io/software/repository/github/miRTop/mirtop",
+	"content": "command lines tool to annotate miRNAs with a standard mirna/isomir naming"
 	},
-	"github/tpospisi/cdetools": {
-	"id": "github/tpospisi/cdetools",
-	"title": "github/tpospisi/cdetools",
-	"url": " https://rseng.github.io/software/repository/github/tpospisi/cdetools",
-	"content": "Tools for Conditional Density Estimates"
+	"github/broadinstitute/cromwell": {
+	"id": "github/broadinstitute/cromwell",
+	"title": "github/broadinstitute/cromwell",
+	"url": " https://rseng.github.io/software/repository/github/broadinstitute/cromwell",
+	"content": "Scientific workflow engine designed for simplicity &amp; scalability. Trivially transition between one off use cases to massive scale production environments"
 	},
-	"github/IndrajeetPatil/ggstatsplot": {
-	"id": "github/IndrajeetPatil/ggstatsplot",
-	"title": "github/IndrajeetPatil/ggstatsplot",
-	"url": " https://rseng.github.io/software/repository/github/IndrajeetPatil/ggstatsplot",
-	"content": "Enhancing `ggplot2` plots with statistical analysis 📊🎨📣"
+	"github/broadinstitute/gatk": {
+	"id": "github/broadinstitute/gatk",
+	"title": "github/broadinstitute/gatk",
+	"url": " https://rseng.github.io/software/repository/github/broadinstitute/gatk",
+	"content": "Official code repository for GATK versions 4 and up"
 	},
-	"github/IndrajeetPatil/statsExpressions": {
-	"id": "github/IndrajeetPatil/statsExpressions",
-	"title": "github/IndrajeetPatil/statsExpressions",
-	"url": " https://rseng.github.io/software/repository/github/IndrajeetPatil/statsExpressions",
-	"content": "Expressions and dataframes with statistical details 📉 📜🔣✅"
+	"github/broadinstitute/CellBender": {
+	"id": "github/broadinstitute/CellBender",
+	"title": "github/broadinstitute/CellBender",
+	"url": " https://rseng.github.io/software/repository/github/broadinstitute/CellBender",
+	"content": "a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data."
 	},
-	"github/rasg-affiliates/healvis": {
-	"id": "github/rasg-affiliates/healvis",
-	"title": "github/rasg-affiliates/healvis",
-	"url": " https://rseng.github.io/software/repository/github/rasg-affiliates/healvis",
-	"content": "Visibility simulation off of HEALPix shells."
+	"github/broadinstitute/picard": {
+	"id": "github/broadinstitute/picard",
+	"title": "github/broadinstitute/picard",
+	"url": " https://rseng.github.io/software/repository/github/broadinstitute/picard",
+	"content": "A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF."
 	},
-	"github/rasg-affiliates/21cmSense": {
-	"id": "github/rasg-affiliates/21cmSense",
-	"title": "github/rasg-affiliates/21cmSense",
-	"url": " https://rseng.github.io/software/repository/github/rasg-affiliates/21cmSense",
-	"content": "Code for calculating the sensitivity of 21cm experiments to the EoR power spectrum"
+	"github/broadinstitute/Drop-seq": {
+	"id": "github/broadinstitute/Drop-seq",
+	"title": "github/broadinstitute/Drop-seq",
+	"url": " https://rseng.github.io/software/repository/github/broadinstitute/Drop-seq",
+	"content": "Java tools for analyzing Drop-seq data"
 	},
-	"github/gnave/Xgremlin": {
-	"id": "github/gnave/Xgremlin",
-	"title": "github/gnave/Xgremlin",
-	"url": " https://rseng.github.io/software/repository/github/gnave/Xgremlin",
-	"content": "A code for analyzing interferograms and spectra from Fourier transform spectrometers"
+	"github/broadinstitute/wot": {
+	"id": "github/broadinstitute/wot",
+	"title": "github/broadinstitute/wot",
+	"url": " https://rseng.github.io/software/repository/github/broadinstitute/wot",
+	"content": "A software package for analyzing snapshots of developmental processes"
 	},
-	"github/gnave/pybranch": {
-	"id": "github/gnave/pybranch",
-	"title": "github/gnave/pybranch",
-	"url": " https://rseng.github.io/software/repository/github/gnave/pybranch",
-	"content": "A program to calculate experimental branching fractions and transition probabilities from atomic spectra"
+	"github/bwengals/CCSNMultivar": {
+	"id": "github/bwengals/CCSNMultivar",
+	"title": "github/bwengals/CCSNMultivar",
+	"url": " https://rseng.github.io/software/repository/github/bwengals/CCSNMultivar",
+	"content": "None"
 	},
-	"github/SharmaLlama/ticktack": {
-	"id": "github/SharmaLlama/ticktack",
-	"title": "github/SharmaLlama/ticktack",
-	"url": " https://rseng.github.io/software/repository/github/SharmaLlama/ticktack",
-	"content": "An open-source carbon box model implementation built on JAX."
+	"github/sheneman/clearcut": {
+	"id": "github/sheneman/clearcut",
+	"title": "github/sheneman/clearcut",
+	"url": " https://rseng.github.io/software/repository/github/sheneman/clearcut",
+	"content": "This is clearcut, the reference implementation for the Relaxed Neighbor Joining algorithm."
 	},
-	"github/barklem/kaulakys": {
-	"id": "github/barklem/kaulakys",
-	"title": "github/barklem/kaulakys",
-	"url": " https://rseng.github.io/software/repository/github/barklem/kaulakys",
-	"content": "Code to calculate cross sections and rate coefficients for inelastic collisions between Rydberg atoms and hydrogen atoms according to the free electron model of Kaulakys (1986, 1991)."
+	"github/msailer1234/JWST_Simulation": {
+	"id": "github/msailer1234/JWST_Simulation",
+	"title": "github/msailer1234/JWST_Simulation",
+	"url": " https://rseng.github.io/software/repository/github/msailer1234/JWST_Simulation",
+	"content": "None"
 	},
-	"github/barklem/abo-cross": {
-	"id": "github/barklem/abo-cross",
-	"title": "github/barklem/abo-cross",
-	"url": " https://rseng.github.io/software/repository/github/barklem/abo-cross",
-	"content": "Interpolate in Anstee-Barklem-O&#39;Mara cross sections for collisional broadening due to hydrogen"
+	"github/BIC-MNI/libminc": {
+	"id": "github/BIC-MNI/libminc",
+	"title": "github/BIC-MNI/libminc",
+	"url": " https://rseng.github.io/software/repository/github/BIC-MNI/libminc",
+	"content": "libminc is the core library and API of the MINC toolkit"
 	},
-	"github/barklem/mswavef": {
-	"id": "github/barklem/mswavef",
-	"title": "github/barklem/mswavef",
-	"url": " https://rseng.github.io/software/repository/github/barklem/mswavef",
-	"content": "Code to calculate hydrogenic and non-hydrogenic momentum-space electronic wavefunctions"
+	"github/Yu-Group/simChef": {
+	"id": "github/Yu-Group/simChef",
+	"title": "github/Yu-Group/simChef",
+	"url": " https://rseng.github.io/software/repository/github/Yu-Group/simChef",
+	"content": "An R package to facilitate PCS simulation studies."
 	},
-	"github/barklem/hlinop": {
-	"id": "github/barklem/hlinop",
-	"title": "github/barklem/hlinop",
-	"url": " https://rseng.github.io/software/repository/github/barklem/hlinop",
-	"content": "Codes for modelling hydrogen line opacity in stellar atmospheres.  See Barklem &amp; Piskunov (2003)"
+	"github/Yu-Group/veridical-flow": {
+	"id": "github/Yu-Group/veridical-flow",
+	"title": "github/Yu-Group/veridical-flow",
+	"url": " https://rseng.github.io/software/repository/github/Yu-Group/veridical-flow",
+	"content": "Making it easier to build stable, trustworthy data-science pipelines."
 	},
-	"github/FiorenSt/AutoSourceID-Light": {
-	"id": "github/FiorenSt/AutoSourceID-Light",
-	"title": "github/FiorenSt/AutoSourceID-Light",
-	"url": " https://rseng.github.io/software/repository/github/FiorenSt/AutoSourceID-Light",
-	"content": "None"
+	"github/erikhom/aida": {
+	"id": "github/erikhom/aida",
+	"title": "github/erikhom/aida",
+	"url": " https://rseng.github.io/software/repository/github/erikhom/aida",
+	"content": "Code for the Adaptive Image Deconvolution Algorithm (AIDA) of Hom et al. (2007) J. Opt. Soc. Amer. A"
 	},
-	"github/adigenova/wengan": {
-	"id": "github/adigenova/wengan",
-	"title": "github/adigenova/wengan",
-	"url": " https://rseng.github.io/software/repository/github/adigenova/wengan",
-	"content": "An accurate and ultra-fast hybrid genome assembler"
+	"github/ezquiaga/phazap": {
+	"id": "github/ezquiaga/phazap",
+	"title": "github/ezquiaga/phazap",
+	"url": " https://rseng.github.io/software/repository/github/ezquiaga/phazap",
+	"content": "Gravitational wave phase reconstruction for low-latency identification of strongly lensed signals"
 	},
-	"github/david-mathews-1994/deltarice": {
-	"id": "github/david-mathews-1994/deltarice",
-	"title": "github/david-mathews-1994/deltarice",
-	"url": " https://rseng.github.io/software/repository/github/david-mathews-1994/deltarice",
-	"content": "A high-performance compression library optimized for up-to 16-bit digitized analog signals"
+	"github/csabiu/kstat": {
+	"id": "github/csabiu/kstat",
+	"title": "github/csabiu/kstat",
+	"url": " https://rseng.github.io/software/repository/github/csabiu/kstat",
+	"content": "Fast KD-tree MPI correlation statistics package - Author: Cristiano Sabiu"
 	},
-	"github/dstansby/pfsspy": {
-	"id": "github/dstansby/pfsspy",
-	"title": "github/dstansby/pfsspy",
-	"url": " https://rseng.github.io/software/repository/github/dstansby/pfsspy",
-	"content": "Potential Field Source Surface model package for Python"
+	"github/linksmart/thing-directory": {
+	"id": "github/linksmart/thing-directory",
+	"title": "github/linksmart/thing-directory",
+	"url": " https://rseng.github.io/software/repository/github/linksmart/thing-directory",
+	"content": "Directory of Web of Things (WoT) Thing Descriptions"
 	},
-	"github/ashleychontos/pySYD": {
-	"id": "github/ashleychontos/pySYD",
-	"title": "github/ashleychontos/pySYD",
-	"url": " https://rseng.github.io/software/repository/github/ashleychontos/pySYD",
-	"content": "automated measurements of global asteroseismic parameters"
+	"github/BirkhoffG/jax-relax": {
+	"id": "github/BirkhoffG/jax-relax",
+	"title": "github/BirkhoffG/jax-relax",
+	"url": " https://rseng.github.io/software/repository/github/BirkhoffG/jax-relax",
+	"content": "Recourse Explanation Library in JAX"
 	},
-	"github/ropensci/Rpolyhedra": {
-	"id": "github/ropensci/Rpolyhedra",
-	"title": "github/ropensci/Rpolyhedra",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/Rpolyhedra",
-	"content": "A polyhedra database scraped from public available sources using R6 (OOP) and &#39;rgl&#39; visualizing capabilities. "
+	"github/fjprichard/PyAFBF": {
+	"id": "github/fjprichard/PyAFBF",
+	"title": "github/fjprichard/PyAFBF",
+	"url": " https://rseng.github.io/software/repository/github/fjprichard/PyAFBF",
+	"content": "A python library for sampling image textures from the anisotropic fractional Brownian field."
 	},
-	"github/ropensci/traits": {
-	"id": "github/ropensci/traits",
-	"title": "github/ropensci/traits",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/traits",
-	"content": "Species traits data"
+	"github/girder/viime": {
+	"id": "github/girder/viime",
+	"title": "github/girder/viime",
+	"url": " https://rseng.github.io/software/repository/github/girder/viime",
+	"content": "None"
 	},
-	"github/ropensci/rtweet": {
-	"id": "github/ropensci/rtweet",
-	"title": "github/ropensci/rtweet",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rtweet",
-	"content": "🐦 R client for interacting with Twitter&#39;s [stream and REST] APIs"
+	"github/ifilot/edp": {
+	"id": "github/ifilot/edp",
+	"title": "github/ifilot/edp",
+	"url": " https://rseng.github.io/software/repository/github/ifilot/edp",
+	"content": "Electron Density Plotter"
 	},
-	"github/ropensci/patentsview": {
-	"id": "github/ropensci/patentsview",
-	"title": "github/ropensci/patentsview",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/patentsview",
-	"content": "An R client to the PatentsView API"
+	"github/David-McKenna/udpPacketManager": {
+	"id": "github/David-McKenna/udpPacketManager",
+	"title": "github/David-McKenna/udpPacketManager",
+	"url": " https://rseng.github.io/software/repository/github/David-McKenna/udpPacketManager",
+	"content": "C Library for handling CEP packet data from an international LOFAR station"
 	},
-	"github/ropensci/pixelclasser": {
-	"id": "github/ropensci/pixelclasser",
-	"title": "github/ropensci/pixelclasser",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/pixelclasser",
-	"content": "Classifies Image Pixels by Colour"
+	"github/tibordome/cosmic_profiles": {
+	"id": "github/tibordome/cosmic_profiles",
+	"title": "github/tibordome/cosmic_profiles",
+	"url": " https://rseng.github.io/software/repository/github/tibordome/cosmic_profiles",
+	"content": "Implements 3D point cloud algorithms for estimation and fitting of shape and density profiles"
 	},
-	"github/ropensci/ckanr": {
-	"id": "github/ropensci/ckanr",
-	"title": "github/ropensci/ckanr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/ckanr",
-	"content": "R client for the CKAN API"
+	"github/ppsp-team/PyNM": {
+	"id": "github/ppsp-team/PyNM",
+	"title": "github/ppsp-team/PyNM",
+	"url": " https://rseng.github.io/software/repository/github/ppsp-team/PyNM",
+	"content": "Lightweight Python implementation of Normative Modelling"
 	},
-	"github/ropensci/tokenizers": {
-	"id": "github/ropensci/tokenizers",
-	"title": "github/ropensci/tokenizers",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/tokenizers",
-	"content": "Fast, Consistent Tokenization of Natural Language Text"
+	"github/surf-eds/one-button-compute": {
+	"id": "github/surf-eds/one-button-compute",
+	"title": "github/surf-eds/one-button-compute",
+	"url": " https://rseng.github.io/software/repository/github/surf-eds/one-button-compute",
+	"content": "Web API for dynamic compute"
 	},
-	"github/ropensci/CoordinateCleaner": {
-	"id": "github/ropensci/CoordinateCleaner",
-	"title": "github/ropensci/CoordinateCleaner",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/CoordinateCleaner",
-	"content": "Automated flagging of common spatial and temporal errors in biological and palaeontological collection data, for the use in conservation, ecology and palaeontology."
+	"github/temuller/piscola": {
+	"id": "github/temuller/piscola",
+	"title": "github/temuller/piscola",
+	"url": " https://rseng.github.io/software/repository/github/temuller/piscola",
+	"content": "Supernova light-curve fitting code"
 	},
-	"github/ropensci/rgpdd": {
-	"id": "github/ropensci/rgpdd",
-	"title": "github/ropensci/rgpdd",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rgpdd",
-	"content": "Interface to the Global Population Dynamics Database, http://www3.imperial.ac.uk/cpb/databases/gpdd"
+	"github/temuller/hostphot": {
+	"id": "github/temuller/hostphot",
+	"title": "github/temuller/hostphot",
+	"url": " https://rseng.github.io/software/repository/github/temuller/hostphot",
+	"content": "HostPhot: global and local photometry of galaxies hosting supernovae or other transients"
 	},
-	"github/ropensci/biomartr": {
-	"id": "github/ropensci/biomartr",
-	"title": "github/ropensci/biomartr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/biomartr",
-	"content": "Genomic Data Retrieval with R"
+	"github/EddyRivasLab/hmmer": {
+	"id": "github/EddyRivasLab/hmmer",
+	"title": "github/EddyRivasLab/hmmer",
+	"url": " https://rseng.github.io/software/repository/github/EddyRivasLab/hmmer",
+	"content": "HMMER: biological sequence analysis using profile HMMs"
 	},
-	"github/ropensci/prism": {
-	"id": "github/ropensci/prism",
-	"title": "github/ropensci/prism",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/prism",
-	"content": "Download data from the Oregon PRISM climate data project http://www.prism.oregonstate.edu/"
+	"github/EddyRivasLab/infernal": {
+	"id": "github/EddyRivasLab/infernal",
+	"title": "github/EddyRivasLab/infernal",
+	"url": " https://rseng.github.io/software/repository/github/EddyRivasLab/infernal",
+	"content": "RNA secondary structure/sequence profiles for homology search and alignment"
 	},
-	"github/ropensci/eia": {
-	"id": "github/ropensci/eia",
-	"title": "github/ropensci/eia",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/eia",
-	"content": "An R package wrapping the US Energy Information Administration open data API."
+	"github/raspishake/rsudp": {
+	"id": "github/raspishake/rsudp",
+	"title": "github/raspishake/rsudp",
+	"url": " https://rseng.github.io/software/repository/github/raspishake/rsudp",
+	"content": "Continuous visual display, sudden motion monitoring, and historical replay of Raspberry Shake data"
 	},
-	"github/ropensci/AntWeb": {
-	"id": "github/ropensci/AntWeb",
-	"title": "github/ropensci/AntWeb",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/AntWeb",
-	"content": "An R wrapper for the AntWeb API"
+	"github/idefix-code/idefix": {
+	"id": "github/idefix-code/idefix",
+	"title": "github/idefix-code/idefix",
+	"url": " https://rseng.github.io/software/repository/github/idefix-code/idefix",
+	"content": "Idefix source code for astrophysical fluid dynamics"
 	},
-	"github/ropensci/git2rdata": {
-	"id": "github/ropensci/git2rdata",
-	"title": "github/ropensci/git2rdata",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/git2rdata",
-	"content": "An R package for storing and retrieving data.frames in git repositories."
+	"github/dgobbi/vtk-dicom": {
+	"id": "github/dgobbi/vtk-dicom",
+	"title": "github/dgobbi/vtk-dicom",
+	"url": " https://rseng.github.io/software/repository/github/dgobbi/vtk-dicom",
+	"content": "A set of classes for using DICOM in VTK."
 	},
-	"github/ropensci/stats19": {
-	"id": "github/ropensci/stats19",
-	"title": "github/ropensci/stats19",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/stats19",
-	"content": "R package for working with open road traffic casualty data from Great Britain"
+	"github/robbievanleeuwen/section-properties": {
+	"id": "github/robbievanleeuwen/section-properties",
+	"title": "github/robbievanleeuwen/section-properties",
+	"url": " https://rseng.github.io/software/repository/github/robbievanleeuwen/section-properties",
+	"content": "Analysis of an arbitrary cross-section in python using the finite element method."
 	},
-	"github/ropensci/datapack": {
-	"id": "github/ropensci/datapack",
-	"title": "github/ropensci/datapack",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/datapack",
-	"content": "An R package to handle data packages"
+	"github/numpy/numpy": {
+	"id": "github/numpy/numpy",
+	"title": "github/numpy/numpy",
+	"url": " https://rseng.github.io/software/repository/github/numpy/numpy",
+	"content": "The fundamental package for scientific computing with Python."
 	},
-	"github/ropensci/rotl": {
-	"id": "github/ropensci/rotl",
-	"title": "github/ropensci/rotl",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rotl",
-	"content": "Interface to Open Tree of Life API"
+	"github/ariedel/lacewing": {
+	"id": "github/ariedel/lacewing",
+	"title": "github/ariedel/lacewing",
+	"url": " https://rseng.github.io/software/repository/github/ariedel/lacewing",
+	"content": "Repository for the LACEwING moving group identification code (Riedel et al. 2017)"
 	},
-	"github/ropensci/pathviewr": {
-	"id": "github/ropensci/pathviewr",
-	"title": "github/ropensci/pathviewr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/pathviewr",
-	"content": "🐦 Tools to import, clean, and visualize animal movement data in R"
+	"github/hveerten/katu": {
+	"id": "github/hveerten/katu",
+	"title": "github/hveerten/katu",
+	"url": " https://rseng.github.io/software/repository/github/hveerten/katu",
+	"content": "None"
 	},
-	"github/ropensci/photosearcher": {
-	"id": "github/ropensci/photosearcher",
-	"title": "github/ropensci/photosearcher",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/photosearcher",
-	"content": "Searches Flickr for photographs and metadata "
+	"github/hveerten/boxfit": {
+	"id": "github/hveerten/boxfit",
+	"title": "github/hveerten/boxfit",
+	"url": " https://rseng.github.io/software/repository/github/hveerten/boxfit",
+	"content": "boxfit, a gamma-ray burst afterglow light curve generator based on two-dimensional hydrodynamics simulations"
 	},
-	"github/ropensci/lingtypology": {
-	"id": "github/ropensci/lingtypology",
-	"title": "github/ropensci/lingtypology",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/lingtypology",
-	"content": "R package for linguistic cartography and typological databases search"
+	"github/QuantEcon/QuantEcon.py": {
+	"id": "github/QuantEcon/QuantEcon.py",
+	"title": "github/QuantEcon/QuantEcon.py",
+	"url": " https://rseng.github.io/software/repository/github/QuantEcon/QuantEcon.py",
+	"content": "A community based Python library for quantitative economics"
 	},
-	"github/ropensci/rnaturalearthdata": {
-	"id": "github/ropensci/rnaturalearthdata",
-	"title": "github/ropensci/rnaturalearthdata",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rnaturalearthdata",
-	"content": "to hold data used by rnaturalearth"
+	"github/tnakazato/priism": {
+	"id": "github/tnakazato/priism",
+	"title": "github/tnakazato/priism",
+	"url": " https://rseng.github.io/software/repository/github/tnakazato/priism",
+	"content": "PRIISM: Python Module for Radio Interferometry Imaging with Sparse Modeling"
 	},
-	"github/ropensci/rOPTRAM": {
-	"id": "github/ropensci/rOPTRAM",
-	"title": "github/ropensci/rOPTRAM",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rOPTRAM",
-	"content": "Derive Soil Moisture Using the OPTRAM Algorithm"
+	"github/zhouzilu/DENDRO": {
+	"id": "github/zhouzilu/DENDRO",
+	"title": "github/zhouzilu/DENDRO",
+	"url": " https://rseng.github.io/software/repository/github/zhouzilu/DENDRO",
+	"content": "Genetic Heterogeneity Profiling by Single Cell RNA Sequencing "
 	},
-	"github/ropensci/staypuft": {
-	"id": "github/ropensci/staypuft",
-	"title": "github/ropensci/staypuft",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/staypuft",
-	"content": "convert objects to and from R data structures"
+	"github/macs3-project/MACS": {
+	"id": "github/macs3-project/MACS",
+	"title": "github/macs3-project/MACS",
+	"url": " https://rseng.github.io/software/repository/github/macs3-project/MACS",
+	"content": "MACS -- Model-based Analysis of ChIP-Seq"
 	},
-	"github/ropensci/helminthR": {
-	"id": "github/ropensci/helminthR",
-	"title": "github/ropensci/helminthR",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/helminthR",
-	"content": "Accesses parasite occurrence records from the London Natural History Museum&#39;s Host-Parasite database, which contains over a quarter of a million helminth records."
+	"github/mavrix93/LightCurvesClassifier": {
+	"id": "github/mavrix93/LightCurvesClassifier",
+	"title": "github/mavrix93/LightCurvesClassifier",
+	"url": " https://rseng.github.io/software/repository/github/mavrix93/LightCurvesClassifier",
+	"content": "Package for machine learning of astronomical objects such as light curves"
 	},
-	"github/ropensci/opentripplanner": {
-	"id": "github/ropensci/opentripplanner",
-	"title": "github/ropensci/opentripplanner",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/opentripplanner",
-	"content": "An API wrapper for OpenTripPlanner (OTP) as an R package"
+	"github/marschall-lab/panacus": {
+	"id": "github/marschall-lab/panacus",
+	"title": "github/marschall-lab/panacus",
+	"url": " https://rseng.github.io/software/repository/github/marschall-lab/panacus",
+	"content": "Panacus is a tool for computing statistics for GFA-formatted pangenome graphs"
 	},
-	"github/ropensci/drake": {
-	"id": "github/ropensci/drake",
-	"title": "github/ropensci/drake",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/drake",
-	"content": "An R-focused pipeline toolkit for reproducibility and high-performance computing"
+	"github/gt1/bambamc": {
+	"id": "github/gt1/bambamc",
+	"title": "github/gt1/bambamc",
+	"url": " https://rseng.github.io/software/repository/github/gt1/bambamc",
+	"content": "lightweight C implementation of name collating BAM file input and BAM file output "
 	},
-	"github/ropensci/rdhs": {
-	"id": "github/ropensci/rdhs",
-	"title": "github/ropensci/rdhs",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rdhs",
-	"content": "API Client and Data Munging for the Demographic and Health Survey Data"
+	"github/Hyperthetical/DarkMatters": {
+	"id": "github/Hyperthetical/DarkMatters",
+	"title": "github/Hyperthetical/DarkMatters",
+	"url": " https://rseng.github.io/software/repository/github/Hyperthetical/DarkMatters",
+	"content": "Multi-frequency emissions from dark matter annihilation/decay"
 	},
-	"github/ropensci/pendulum": {
-	"id": "github/ropensci/pendulum",
-	"title": "github/ropensci/pendulum",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/pendulum",
-	"content": "a date/time replacement pkg for R to facilitate time hacking"
+	"github/citiususc/veryfasttree": {
+	"id": "github/citiususc/veryfasttree",
+	"title": "github/citiususc/veryfasttree",
+	"url": " https://rseng.github.io/software/repository/github/citiususc/veryfasttree",
+	"content": "Speeding up the estimation of phylogenetic trees for large alignments through parallelization and vectorization strategies"
 	},
-	"github/ropensci/SymbiotaR2": {
-	"id": "github/ropensci/SymbiotaR2",
-	"title": "github/ropensci/SymbiotaR2",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/SymbiotaR2",
-	"content": "SymbiotaR2: an R package for accessing and downloading from Symbiota2 portals"
+	"github/citiususc/BigSeqKit": {
+	"id": "github/citiususc/BigSeqKit",
+	"title": "github/citiususc/BigSeqKit",
+	"url": " https://rseng.github.io/software/repository/github/citiususc/BigSeqKit",
+	"content": "BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale"
 	},
-	"github/ropensci/mcbette": {
-	"id": "github/ropensci/mcbette",
-	"title": "github/ropensci/mcbette",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/mcbette",
-	"content": "Model Comparison using babette"
+	"github/AliYoussef96/parazitCUB": {
+	"id": "github/AliYoussef96/parazitCUB",
+	"title": "github/AliYoussef96/parazitCUB",
+	"url": " https://rseng.github.io/software/repository/github/AliYoussef96/parazitCUB",
+	"content": "parazitCUB streamlines the process of investigating the adaptations of parasites&#39; Codon Usage Bias (CUB) within the R environment"
 	},
-	"github/ropensci/daiquiri": {
-	"id": "github/ropensci/daiquiri",
-	"title": "github/ropensci/daiquiri",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/daiquiri",
-	"content": "Data quality reporting for temporal datasets."
+	"github/neuralhydrology/neuralhydrology": {
+	"id": "github/neuralhydrology/neuralhydrology",
+	"title": "github/neuralhydrology/neuralhydrology",
+	"url": " https://rseng.github.io/software/repository/github/neuralhydrology/neuralhydrology",
+	"content": "Python library to train neural networks with a strong focus on hydrological applications."
 	},
-	"github/ropensci/EML": {
-	"id": "github/ropensci/EML",
-	"title": "github/ropensci/EML",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/EML",
-	"content": " Ecological Metadata Language interface for R: synthesis and integration of heterogenous data"
+	"github/Bioinformatics-Munich/scas_dashboard": {
+	"id": "github/Bioinformatics-Munich/scas_dashboard",
+	"title": "github/Bioinformatics-Munich/scas_dashboard",
+	"url": " https://rseng.github.io/software/repository/github/Bioinformatics-Munich/scas_dashboard",
+	"content": "SCAS dashboard: A tool to intuitively and interactively analyze Slurm cluster usage"
 	},
-	"github/ropensci/conditionz": {
-	"id": "github/ropensci/conditionz",
-	"title": "github/ropensci/conditionz",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/conditionz",
-	"content": "control how many times conditions are thrown"
+	"github/annajenul/UBayFS": {
+	"id": "github/annajenul/UBayFS",
+	"title": "github/annajenul/UBayFS",
+	"url": " https://rseng.github.io/software/repository/github/annajenul/UBayFS",
+	"content": "UBayFS implements the UBayFS feature selection framework, together with an interactive Shiny dashbord."
 	},
-	"github/ropensci/finch": {
-	"id": "github/ropensci/finch",
-	"title": "github/ropensci/finch",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/finch",
-	"content": "Read Darwin Core Archive files"
+	"github/fermisurfaces/IFermi": {
+	"id": "github/fermisurfaces/IFermi",
+	"title": "github/fermisurfaces/IFermi",
+	"url": " https://rseng.github.io/software/repository/github/fermisurfaces/IFermi",
+	"content": "Fermi surface generation, analysis and visualisation."
 	},
-	"github/ropensci/antanym": {
-	"id": "github/ropensci/antanym",
-	"title": "github/ropensci/antanym",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/antanym",
-	"content": "R package for Antarctic geographic placenames"
+	"github/lsds/TaLoS": {
+	"id": "github/lsds/TaLoS",
+	"title": "github/lsds/TaLoS",
+	"url": " https://rseng.github.io/software/repository/github/lsds/TaLoS",
+	"content": "Efficient TLS termination inside Intel SGX enclaves for existing applications"
 	},
-	"github/ropensci/tic": {
-	"id": "github/ropensci/tic",
-	"title": "github/ropensci/tic",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/tic",
-	"content": "Tasks Integrating Continuously: CI-Agnostic Workflow Definitions"
+	"github/lsds/LightSaber": {
+	"id": "github/lsds/LightSaber",
+	"title": "github/lsds/LightSaber",
+	"url": " https://rseng.github.io/software/repository/github/lsds/LightSaber",
+	"content": "Multi-core Window-Based Stream Processing Engine"
 	},
-	"github/ropensci/fulltext": {
-	"id": "github/ropensci/fulltext",
-	"title": "github/ropensci/fulltext",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/fulltext",
-	"content": "Search across and get full text for OA &amp; closed journals"
+	"github/lsds/SEEP": {
+	"id": "github/lsds/SEEP",
+	"title": "github/lsds/SEEP",
+	"url": " https://rseng.github.io/software/repository/github/lsds/SEEP",
+	"content": "Cluster computing using Stateful Dataflow Graphs"
 	},
-	"github/ropensci/DataSpaceR": {
-	"id": "github/ropensci/DataSpaceR",
-	"title": "github/ropensci/DataSpaceR",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/DataSpaceR",
-	"content": "R Interface to the CAVD DataSpace"
+	"github/lsds/KungFu": {
+	"id": "github/lsds/KungFu",
+	"title": "github/lsds/KungFu",
+	"url": " https://rseng.github.io/software/repository/github/lsds/KungFu",
+	"content": "Fast and Adaptive Distributed Machine Learning for TensorFlow, PyTorch and MindSpore."
 	},
-	"github/ropensci/ruODK": {
-	"id": "github/ropensci/ruODK",
-	"title": "github/ropensci/ruODK",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/ruODK",
-	"content": "ruODK: An R Client for the ODK Central API"
+	"github/lsds/Crossbow": {
+	"id": "github/lsds/Crossbow",
+	"title": "github/lsds/Crossbow",
+	"url": " https://rseng.github.io/software/repository/github/lsds/Crossbow",
+	"content": "Crossbow: A Multi-GPU Deep Learning System for Training with Small Batch Sizes"
 	},
-	"github/ropensci/plater": {
-	"id": "github/ropensci/plater",
-	"title": "github/ropensci/plater",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/plater",
-	"content": "Tools to make it easy to work with microtiter plate-shaped data"
+	"github/lsds/sgx-lkl": {
+	"id": "github/lsds/sgx-lkl",
+	"title": "github/lsds/sgx-lkl",
+	"url": " https://rseng.github.io/software/repository/github/lsds/sgx-lkl",
+	"content": "SGX-LKL Library OS for running Linux applications inside of Intel SGX enclaves"
 	},
-	"github/ropensci/lightr": {
-	"id": "github/ropensci/lightr",
-	"title": "github/ropensci/lightr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/lightr",
-	"content": "Import spectral data and related metadata in R"
+	"github/lsds/faasm": {
+	"id": "github/lsds/faasm",
+	"title": "github/lsds/faasm",
+	"url": " https://rseng.github.io/software/repository/github/lsds/faasm",
+	"content": "High-performance stateful serverless runtime based on WebAssembly"
 	},
-	"github/ropensci/hydroscoper": {
-	"id": "github/ropensci/hydroscoper",
-	"title": "github/ropensci/hydroscoper",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/hydroscoper",
-	"content": "R interface to the Greek National Data Bank for Hydrometeorological Information"
+	"github/lsds/Teechain": {
+	"id": "github/lsds/Teechain",
+	"title": "github/lsds/Teechain",
+	"url": " https://rseng.github.io/software/repository/github/lsds/Teechain",
+	"content": "Teechain: A Secure Payment Network with Asynchronous Blockchain Access"
 	},
-	"github/ropensci/rcitoid": {
-	"id": "github/ropensci/rcitoid",
-	"title": "github/ropensci/rcitoid",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rcitoid",
-	"content": "Citation data via Wikimedia using the Citoid service "
+	"github/lsds/Saber": {
+	"id": "github/lsds/Saber",
+	"title": "github/lsds/Saber",
+	"url": " https://rseng.github.io/software/repository/github/lsds/Saber",
+	"content": "Window-Based Hybrid CPU/GPU Stream Processing Engine"
 	},
-	"github/ropensci/rcoreoa": {
-	"id": "github/ropensci/rcoreoa",
-	"title": "github/ropensci/rcoreoa",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rcoreoa",
-	"content": "CORE API R Client"
+	"github/lsds/Neptune": {
+	"id": "github/lsds/Neptune",
+	"title": "github/lsds/Neptune",
+	"url": " https://rseng.github.io/software/repository/github/lsds/Neptune",
+	"content": "Neptune Execution Framework for Stream/Batch Spark Applications"
 	},
-	"github/ropensci/phylocomr": {
-	"id": "github/ropensci/phylocomr",
-	"title": "github/ropensci/phylocomr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/phylocomr",
-	"content": "Phylocom R interface"
+	"github/VasuLab/rgfrosh": {
+	"id": "github/VasuLab/rgfrosh",
+	"title": "github/VasuLab/rgfrosh",
+	"url": " https://rseng.github.io/software/repository/github/VasuLab/rgfrosh",
+	"content": "A frozen shock solver for ideal and real gas equations of state."
 	},
-	"github/ropensci/dbparser": {
-	"id": "github/ropensci/dbparser",
-	"title": "github/ropensci/dbparser",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/dbparser",
-	"content": "Source code for the R package, &#34;dbparser&#34; (i.e. DrugBank Parser)"
+	"github/Midnighter/dependency-info": {
+	"id": "github/Midnighter/dependency-info",
+	"title": "github/Midnighter/dependency-info",
+	"url": " https://rseng.github.io/software/repository/github/Midnighter/dependency-info",
+	"content": "Retrieve and print Python package dependencies."
 	},
-	"github/ropensci/mctq": {
-	"id": "github/ropensci/mctq",
-	"title": "github/ropensci/mctq",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/mctq",
-	"content": "☀ Tools to process the Munich ChronoType Questionnaire (MCTQ)"
+	"github/NCIP/visda": {
+	"id": "github/NCIP/visda",
+	"title": "github/NCIP/visda",
+	"url": " https://rseng.github.io/software/repository/github/NCIP/visda",
+	"content": "VISDA (VIsual Statistical Data Analyzer) is analytical tool for cluster modeling and visualization of microarray data."
 	},
-	"github/ropensci/beastier": {
-	"id": "github/ropensci/beastier",
-	"title": "github/ropensci/beastier",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/beastier",
-	"content": "R package to run BEAST2"
+	"github/jo276/EvapMass": {
+	"id": "github/jo276/EvapMass",
+	"title": "github/jo276/EvapMass",
+	"url": " https://rseng.github.io/software/repository/github/jo276/EvapMass",
+	"content": "None"
 	},
-	"github/ropensci/ijtiff": {
-	"id": "github/ropensci/ijtiff",
-	"title": "github/ropensci/ijtiff",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/ijtiff",
-	"content": "An R Package for general purpose TIFF file I/O which plays nice with ImageJ"
+	"github/mlhutchins/LWPC": {
+	"id": "github/mlhutchins/LWPC",
+	"title": "github/mlhutchins/LWPC",
+	"url": " https://rseng.github.io/software/repository/github/mlhutchins/LWPC",
+	"content": "Version 2.1 of the U.S. Navy Long Wave Propagation Capability code with alterations for running as a MATLAB function. The altered version has most warning and error reporting removed."
 	},
-	"github/ropensci/wellknown": {
-	"id": "github/ropensci/wellknown",
-	"title": "github/ropensci/wellknown",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/wellknown",
-	"content": "WKT &lt;-&gt; GeoJSON"
+	"github/FDPS/FDPS": {
+	"id": "github/FDPS/FDPS",
+	"title": "github/FDPS/FDPS",
+	"url": " https://rseng.github.io/software/repository/github/FDPS/FDPS",
+	"content": "Github repository for FDPS"
 	},
-	"github/ropensci/charlatan": {
-	"id": "github/ropensci/charlatan",
-	"title": "github/ropensci/charlatan",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/charlatan",
-	"content": "Create fake data in R"
+	"github/wullm/fastdf": {
+	"id": "github/wullm/fastdf",
+	"title": "github/wullm/fastdf",
+	"url": " https://rseng.github.io/software/repository/github/wullm/fastdf",
+	"content": "Integrate neutrino geodesics in linear theory."
 	},
-	"github/ropensci/tesseract": {
-	"id": "github/ropensci/tesseract",
-	"title": "github/ropensci/tesseract",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/tesseract",
-	"content": "Bindings to Tesseract OCR engine for R"
+	"github/wullm/zwindstroom": {
+	"id": "github/wullm/zwindstroom",
+	"title": "github/wullm/zwindstroom",
+	"url": " https://rseng.github.io/software/repository/github/wullm/zwindstroom",
+	"content": "Library for cosmic neutrino calculations"
 	},
-	"github/ropensci/ghql": {
-	"id": "github/ropensci/ghql",
-	"title": "github/ropensci/ghql",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/ghql",
-	"content": "GraphQL R client"
+	"github/mgalardini/pyseer": {
+	"id": "github/mgalardini/pyseer",
+	"title": "github/mgalardini/pyseer",
+	"url": " https://rseng.github.io/software/repository/github/mgalardini/pyseer",
+	"content": "SEER, reimplemented in python 🐍🔮"
 	},
-	"github/ropensci/rplos": {
-	"id": "github/ropensci/rplos",
-	"title": "github/ropensci/rplos",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rplos",
-	"content": "R client for the PLoS Journals API"
+	"github/gpantel/MolPainter": {
+	"id": "github/gpantel/MolPainter",
+	"title": "github/gpantel/MolPainter",
+	"url": " https://rseng.github.io/software/repository/github/gpantel/MolPainter",
+	"content": "A Tool for Drawing Complex Planar Molecular Systems of Arbitrary Composition and Placement"
 	},
-	"github/ropensci/arkdb": {
-	"id": "github/ropensci/arkdb",
-	"title": "github/ropensci/arkdb",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/arkdb",
-	"content": "Archive and unarchive databases as flat text files"
+	"github/3top1a/biotools-linter": {
+	"id": "github/3top1a/biotools-linter",
+	"title": "github/3top1a/biotools-linter",
+	"url": " https://rseng.github.io/software/repository/github/3top1a/biotools-linter",
+	"content": "This website serves to help bio.tools database editors and maintainers help with data quality by searching for common quantifiable errors."
 	},
-	"github/ropensci/bittrex": {
-	"id": "github/ropensci/bittrex",
-	"title": "github/ropensci/bittrex",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/bittrex",
-	"content": "A R Client for the Bittrex Crypto-Currency Exchange"
+	"github/lucabaldini/ixpeobssim": {
+	"id": "github/lucabaldini/ixpeobssim",
+	"title": "github/lucabaldini/ixpeobssim",
+	"url": " https://rseng.github.io/software/repository/github/lucabaldini/ixpeobssim",
+	"content": "Simulation and analysis framework for the Imaging X-ray Polarimetry Explorer"
 	},
-	"github/ropensci/pdftools": {
-	"id": "github/ropensci/pdftools",
-	"title": "github/ropensci/pdftools",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/pdftools",
-	"content": "Text Extraction, Rendering and Converting of PDF Documents"
+	"github/tariqdaouda/CAMAP": {
+	"id": "github/tariqdaouda/CAMAP",
+	"title": "github/tariqdaouda/CAMAP",
+	"url": " https://rseng.github.io/software/repository/github/tariqdaouda/CAMAP",
+	"content": "Codon Arrangement MAP Predictor, predicting MHC-I Associated Peptides presentation form mRNA"
 	},
-	"github/ropensci/ritis": {
-	"id": "github/ropensci/ritis",
-	"title": "github/ropensci/ritis",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/ritis",
-	"content": "Integrated Taxonomic Information Service (ITIS) R client"
+	"github/johannes-titz/cofad": {
+	"id": "github/johannes-titz/cofad",
+	"title": "github/johannes-titz/cofad",
+	"url": " https://rseng.github.io/software/repository/github/johannes-titz/cofad",
+	"content": "None"
 	},
-	"github/ropensci/treebase": {
-	"id": "github/ropensci/treebase",
-	"title": "github/ropensci/treebase",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/treebase",
-	"content": "An R interface to the treeBASE API (now on CRAN)"
+	"github/nkhorshid/simab": {
+	"id": "github/nkhorshid/simab",
+	"title": "github/nkhorshid/simab",
+	"url": " https://rseng.github.io/software/repository/github/nkhorshid/simab",
+	"content": "Planet formation model"
 	},
-	"github/ropensci/RNeXML": {
-	"id": "github/ropensci/RNeXML",
-	"title": "github/ropensci/RNeXML",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/RNeXML",
-	"content": "Implementing semantically rich NeXML I/O in R"
+	"github/wlloyduw/ContainerProfiler": {
+	"id": "github/wlloyduw/ContainerProfiler",
+	"title": "github/wlloyduw/ContainerProfiler",
+	"url": " https://rseng.github.io/software/repository/github/wlloyduw/ContainerProfiler",
+	"content": "None"
 	},
-	"github/ropensci/getCRUCLdata": {
-	"id": "github/ropensci/getCRUCLdata",
-	"title": "github/ropensci/getCRUCLdata",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/getCRUCLdata",
-	"content": "CRU CL v. 2.0 Climatology Client for R"
+	"github/RBrearton/islatu": {
+	"id": "github/RBrearton/islatu",
+	"title": "github/RBrearton/islatu",
+	"url": " https://rseng.github.io/software/repository/github/RBrearton/islatu",
+	"content": "X-ray reflectometry reduction from Diamond Light Source"
 	},
-	"github/ropensci/bib2df": {
-	"id": "github/ropensci/bib2df",
-	"title": "github/ropensci/bib2df",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/bib2df",
-	"content": "Parse a BibTeX file to a tibble"
+	"github/lkmklsmn/DrivAER": {
+	"id": "github/lkmklsmn/DrivAER",
+	"title": "github/lkmklsmn/DrivAER",
+	"url": " https://rseng.github.io/software/repository/github/lkmklsmn/DrivAER",
+	"content": "DrivAER: Identification of Driving transcriptional programs using AutoEncoder based Relevance scores"
 	},
-	"github/ropensci/rppo": {
-	"id": "github/ropensci/rppo",
-	"title": "github/ropensci/rppo",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rppo",
-	"content": "R package for accessing PPO data store"
+	"github/IanevskiAleksandr/sc-type": {
+	"id": "github/IanevskiAleksandr/sc-type",
+	"title": "github/IanevskiAleksandr/sc-type",
+	"url": " https://rseng.github.io/software/repository/github/IanevskiAleksandr/sc-type",
+	"content": "None"
 	},
-	"github/ropensci/landscapetools": {
-	"id": "github/ropensci/landscapetools",
-	"title": "github/ropensci/landscapetools",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/landscapetools",
-	"content": "📦 R package for some of the less-glamorous tasks involved in landscape analysis 🌏"
+	"github/djgroen/MPWide": {
+	"id": "github/djgroen/MPWide",
+	"title": "github/djgroen/MPWide",
+	"url": " https://rseng.github.io/software/repository/github/djgroen/MPWide",
+	"content": "MPWide is a communication library for message passing across wide area networks."
 	},
-	"github/ropensci/clifro": {
-	"id": "github/ropensci/clifro",
-	"title": "github/ropensci/clifro",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/clifro",
-	"content": "Easily download and visualise climate data from CliFlo"
+	"github/andyphilips/dynamac": {
+	"id": "github/andyphilips/dynamac",
+	"title": "github/andyphilips/dynamac",
+	"url": " https://rseng.github.io/software/repository/github/andyphilips/dynamac",
+	"content": "Dynamic simulation and testing for single-equation ARDL models, available for both R and Stata"
 	},
-	"github/ropensci/mapscanner": {
-	"id": "github/ropensci/mapscanner",
-	"title": "github/ropensci/mapscanner",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/mapscanner",
-	"content": "R package to print maps, draw on them, and scan them back in"
+	"github/xiaofengsong/pHisPred": {
+	"id": "github/xiaofengsong/pHisPred",
+	"title": "github/xiaofengsong/pHisPred",
+	"url": " https://rseng.github.io/software/repository/github/xiaofengsong/pHisPred",
+	"content": "A bioinformatic tool for identifying protein histidine phosphorylation sites"
 	},
-	"github/ropensci/rrricanes": {
-	"id": "github/ropensci/rrricanes",
-	"title": "github/ropensci/rrricanes",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rrricanes",
-	"content": "Web scraper for Atlantic and east Pacific hurricanes and tropical storms"
+	"github/BoevaLab/FREEC": {
+	"id": "github/BoevaLab/FREEC",
+	"title": "github/BoevaLab/FREEC",
+	"url": " https://rseng.github.io/software/repository/github/BoevaLab/FREEC",
+	"content": "Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data"
 	},
-	"github/ropensci/MODIStsp": {
-	"id": "github/ropensci/MODIStsp",
-	"title": "github/ropensci/MODIStsp",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/MODIStsp",
-	"content": "An &#34;R&#34; package for automatic download and preprocessing of MODIS Land Products Time Series"
+	"github/cieslar/Indri": {
+	"id": "github/cieslar/Indri",
+	"title": "github/cieslar/Indri",
+	"url": " https://rseng.github.io/software/repository/github/cieslar/Indri",
+	"content": "The Markov chain Monte Carlo population synthesis code of single pulsars in the Milky Way"
 	},
-	"github/ropensci/dataspice": {
-	"id": "github/ropensci/dataspice",
-	"title": "github/ropensci/dataspice",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/dataspice",
-	"content": ":hot_pepper: Create lightweight schema.org descriptions of your datasets"
+	"github/danielacarrasco/GLACiAR": {
+	"id": "github/danielacarrasco/GLACiAR",
+	"title": "github/danielacarrasco/GLACiAR",
+	"url": " https://rseng.github.io/software/repository/github/danielacarrasco/GLACiAR",
+	"content": "GLACiAR (GaLAxy survey Completeness AlgoRithm) is an open-source python tool for simulations of source recovery and completeness in galaxy surveys."
 	},
-	"github/ropensci/skimr": {
-	"id": "github/ropensci/skimr",
-	"title": "github/ropensci/skimr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/skimr",
-	"content": "A frictionless, pipeable approach to dealing with summary statistics"
+	"github/Wang-Ruihui/A-live-homogeneous-database-of-solar-active-regions": {
+	"id": "github/Wang-Ruihui/A-live-homogeneous-database-of-solar-active-regions",
+	"title": "github/Wang-Ruihui/A-live-homogeneous-database-of-solar-active-regions",
+	"url": " https://rseng.github.io/software/repository/github/Wang-Ruihui/A-live-homogeneous-database-of-solar-active-regions",
+	"content": "This is a live homogeneous database of solar active regions (ARs).  It&#39;s produced by an automatic detection method of AR."
 	},
-	"github/ropensci/worrms": {
-	"id": "github/ropensci/worrms",
-	"title": "github/ropensci/worrms",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/worrms",
-	"content": "World Register of Marine Species R client"
+	"github/alejandrobll/py-sphviewer": {
+	"id": "github/alejandrobll/py-sphviewer",
+	"title": "github/alejandrobll/py-sphviewer",
+	"url": " https://rseng.github.io/software/repository/github/alejandrobll/py-sphviewer",
+	"content": "Py-SPHViewer is a framework for rendering cosmological simulations in Python using the Smoothed Particle Hydrodynamics scheme."
 	},
-	"github/ropensci/av": {
-	"id": "github/ropensci/av",
-	"title": "github/ropensci/av",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/av",
-	"content": "Working with Video in R"
+	"github/mlegr/EqualISER": {
+	"id": "github/mlegr/EqualISER",
+	"title": "github/mlegr/EqualISER",
+	"url": " https://rseng.github.io/software/repository/github/mlegr/EqualISER",
+	"content": "None"
 	},
-	"github/ropensci/USAboundariesData": {
-	"id": "github/ropensci/USAboundariesData",
-	"title": "github/ropensci/USAboundariesData",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/USAboundariesData",
-	"content": "Datasets for the &#39;USAboundaries&#39; package"
+	"github/lucian-ilie/DELPHI": {
+	"id": "github/lucian-ilie/DELPHI",
+	"title": "github/lucian-ilie/DELPHI",
+	"url": " https://rseng.github.io/software/repository/github/lucian-ilie/DELPHI",
+	"content": "Deep learning protein-protein binding sites prediction"
 	},
-	"github/ropensci/nbaR": {
-	"id": "github/ropensci/nbaR",
-	"title": "github/ropensci/nbaR",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/nbaR",
-	"content": "R client library for the Netherlands Biodiversity Api (NBA)"
+	"github/HKU-BAL/Clair3": {
+	"id": "github/HKU-BAL/Clair3",
+	"title": "github/HKU-BAL/Clair3",
+	"url": " https://rseng.github.io/software/repository/github/HKU-BAL/Clair3",
+	"content": "Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling"
 	},
-	"github/ropensci/cleanEHR": {
-	"id": "github/ropensci/cleanEHR",
-	"title": "github/ropensci/cleanEHR",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/cleanEHR",
-	"content": "Essential tools and utility functions to facilitate the data processing pipeline, data cleaning and data analysing of clinical data from CC-HIC"
+	"github/tholoien/empiriciSN": {
+	"id": "github/tholoien/empiriciSN",
+	"title": "github/tholoien/empiriciSN",
+	"url": " https://rseng.github.io/software/repository/github/tholoien/empiriciSN",
+	"content": "Generate realistic parameters for a SN given host galaxy observations based on empirical correlations from SN datasets"
 	},
-	"github/ropensci/jsonld": {
-	"id": "github/ropensci/jsonld",
-	"title": "github/ropensci/jsonld",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/jsonld",
-	"content": "R wrapper for jsonld.js JavaScript library"
+	"github/tholoien/XDGMM": {
+	"id": "github/tholoien/XDGMM",
+	"title": "github/tholoien/XDGMM",
+	"url": " https://rseng.github.io/software/repository/github/tholoien/XDGMM",
+	"content": "A wrapper class for the scikit-learn BaseEstimator class that implements both the astroML and Bovy et al. (2011) XDGMM methods."
 	},
-	"github/ropensci/cld3": {
-	"id": "github/ropensci/cld3",
-	"title": "github/ropensci/cld3",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/cld3",
-	"content": "Bindings to Google&#39;s Compact Language Detector 3 "
+	"github/openscm/openscm-twolayermodel": {
+	"id": "github/openscm/openscm-twolayermodel",
+	"title": "github/openscm/openscm-twolayermodel",
+	"url": " https://rseng.github.io/software/repository/github/openscm/openscm-twolayermodel",
+	"content": "Implementations of two-layer models by Held et al. and Geoffroy et al."
 	},
-	"github/ropensci/qualtRics": {
-	"id": "github/ropensci/qualtRics",
-	"title": "github/ropensci/qualtRics",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/qualtRics",
-	"content": "Download ⬇️ Qualtrics survey data directly into R!"
+	"github/ZhangGroup-MITChemistry/OpenNucleome": {
+	"id": "github/ZhangGroup-MITChemistry/OpenNucleome",
+	"title": "github/ZhangGroup-MITChemistry/OpenNucleome",
+	"url": " https://rseng.github.io/software/repository/github/ZhangGroup-MITChemistry/OpenNucleome",
+	"content": "OpenNucleome is an open-source software designed for conducting molecular dynamics (MD) simulations of the human nucleus. This software streamlines the process of setting up whole nucleus simulations through just a few lines of Python scripting."
 	},
-	"github/ropensci/bikedata": {
-	"id": "github/ropensci/bikedata",
-	"title": "github/ropensci/bikedata",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/bikedata",
-	"content": ":bike: Extract data from public hire bicycle systems"
+	"github/hposborn/MonoTools": {
+	"id": "github/hposborn/MonoTools",
+	"title": "github/hposborn/MonoTools",
+	"url": " https://rseng.github.io/software/repository/github/hposborn/MonoTools",
+	"content": "A package for detecting, vetting, and modelling transiting exoplanets on uncertain periods"
 	},
-	"github/ropensci/fingertipsR": {
-	"id": "github/ropensci/fingertipsR",
-	"title": "github/ropensci/fingertipsR",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/fingertipsR",
-	"content": "R package to interact with Public Health England’s Fingertips data tool"
+	"github/KenethGarcia/ClassiPyGRB": {
+	"id": "github/KenethGarcia/ClassiPyGRB",
+	"title": "github/KenethGarcia/ClassiPyGRB",
+	"url": " https://rseng.github.io/software/repository/github/KenethGarcia/ClassiPyGRB",
+	"content": "This repository contains all the updates, code, and documentation related to ClassiPyGRB."
 	},
-	"github/ropensci/beautier": {
-	"id": "github/ropensci/beautier",
-	"title": "github/ropensci/beautier",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/beautier",
-	"content": "R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2"
+	"github/HillLab/SomaticSiMu": {
+	"id": "github/HillLab/SomaticSiMu",
+	"title": "github/HillLab/SomaticSiMu",
+	"url": " https://rseng.github.io/software/repository/github/HillLab/SomaticSiMu",
+	"content": "SomaticSiMu generates single and double base pair substitutions, and single base pair insertions and deletions of biologically representative mutation signature probabilities and combinations."
 	},
-	"github/ropensci/gittargets": {
-	"id": "github/ropensci/gittargets",
-	"title": "github/ropensci/gittargets",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/gittargets",
-	"content": "Data version control for reproducible analysis pipelines in R with {targets}."
+	"github/slimgroup/InvertibleNetworks.jl": {
+	"id": "github/slimgroup/InvertibleNetworks.jl",
+	"title": "github/slimgroup/InvertibleNetworks.jl",
+	"url": " https://rseng.github.io/software/repository/github/slimgroup/InvertibleNetworks.jl",
+	"content": "A Julia framework for invertible neural networks"
 	},
-	"github/ropensci/taxadb": {
-	"id": "github/ropensci/taxadb",
-	"title": "github/ropensci/taxadb",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/taxadb",
-	"content": ":package: Taxonomic Database"
+	"github/Robaina/Pynteny": {
+	"id": "github/Robaina/Pynteny",
+	"title": "github/Robaina/Pynteny",
+	"url": " https://rseng.github.io/software/repository/github/Robaina/Pynteny",
+	"content": "Query sequence database by HMMs arranged in predefined synteny structure"
 	},
-	"github/ropensci/osmextract": {
-	"id": "github/ropensci/osmextract",
-	"title": "github/ropensci/osmextract",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/osmextract",
-	"content": "Download and import OpenStreetMap data from Geofabrik and other providers"
+	"github/r3w0p/bobocep": {
+	"id": "github/r3w0p/bobocep",
+	"title": "github/r3w0p/bobocep",
+	"url": " https://rseng.github.io/software/repository/github/r3w0p/bobocep",
+	"content": "A fault-tolerant Complex Event Processing engine designed for edge computing in Internet of Things systems."
 	},
-	"github/ropensci/paleobioDB": {
-	"id": "github/ropensci/paleobioDB",
-	"title": "github/ropensci/paleobioDB",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/paleobioDB",
-	"content": "R interface to the Paleobiology Database"
+	"github/hauselin/ollama-r": {
+	"id": "github/hauselin/ollama-r",
+	"title": "github/hauselin/ollama-r",
+	"url": " https://rseng.github.io/software/repository/github/hauselin/ollama-r",
+	"content": "R library to run Ollama language models"
 	},
-	"github/ropensci/wikitaxa": {
-	"id": "github/ropensci/wikitaxa",
-	"title": "github/ropensci/wikitaxa",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/wikitaxa",
-	"content": "taxonomy data from Wikipedia/Wikidata/Wikispecies"
+	"github/chemprop/chemprop_benchmark": {
+	"id": "github/chemprop/chemprop_benchmark",
+	"title": "github/chemprop/chemprop_benchmark",
+	"url": " https://rseng.github.io/software/repository/github/chemprop/chemprop_benchmark",
+	"content": " Chemprop benchmarking scripts and data"
 	},
-	"github/ropensci/ecoengine": {
-	"id": "github/ropensci/ecoengine",
-	"title": "github/ropensci/ecoengine",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/ecoengine",
-	"content": "Programmatic interface to the Berkeley Ecoinformatics Engine "
+	"github/vcflib/vcflib": {
+	"id": "github/vcflib/vcflib",
+	"title": "github/vcflib/vcflib",
+	"url": " https://rseng.github.io/software/repository/github/vcflib/vcflib",
+	"content": " C++ library and cmdline tools for parsing and manipulating VCF files"
 	},
-	"github/ropensci/tidypmc": {
-	"id": "github/ropensci/tidypmc",
-	"title": "github/ropensci/tidypmc",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/tidypmc",
-	"content": "Parse full text XML documents from Pubmed Central"
+	"github/vcflib/bio-vcf": {
+	"id": "github/vcflib/bio-vcf",
+	"title": "github/vcflib/bio-vcf",
+	"url": " https://rseng.github.io/software/repository/github/vcflib/bio-vcf",
+	"content": "Smart VCF parser DSL"
 	},
-	"github/ropensci/tif": {
-	"id": "github/ropensci/tif",
-	"title": "github/ropensci/tif",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/tif",
-	"content": "Text Interchange Formats"
+	"github/solerjuan/magnetar": {
+	"id": "github/solerjuan/magnetar",
+	"title": "github/solerjuan/magnetar",
+	"url": " https://rseng.github.io/software/repository/github/solerjuan/magnetar",
+	"content": "None"
 	},
-	"github/ropensci/xslt": {
-	"id": "github/ropensci/xslt",
-	"title": "github/ropensci/xslt",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/xslt",
-	"content": "Extension of xml2 package for xsl transformations"
+	"github/solerjuan/astroHOG": {
+	"id": "github/solerjuan/astroHOG",
+	"title": "github/solerjuan/astroHOG",
+	"url": " https://rseng.github.io/software/repository/github/solerjuan/astroHOG",
+	"content": "Set of tools for the analysis correlations using the Histograms of Oriented Gradients"
 	},
-	"github/ropensci/comtradr": {
-	"id": "github/ropensci/comtradr",
-	"title": "github/ropensci/comtradr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/comtradr",
-	"content": "Functions for Interacting with the UN Comtrade API"
+	"github/JD2112/methylr": {
+	"id": "github/JD2112/methylr",
+	"title": "github/JD2112/methylr",
+	"url": " https://rseng.github.io/software/repository/github/JD2112/methylr",
+	"content": "methylR: a single shiny solution from sequencer data to pathway analysis"
 	},
-	"github/ropensci/rinat": {
-	"id": "github/ropensci/rinat",
-	"title": "github/ropensci/rinat",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rinat",
-	"content": "A programmatic interface to iNaturalist"
+	"github/QITI/pySLM2": {
+	"id": "github/QITI/pySLM2",
+	"title": "github/QITI/pySLM2",
+	"url": " https://rseng.github.io/software/repository/github/QITI/pySLM2",
+	"content": "None"
 	},
-	"github/ropensci/microdemic": {
-	"id": "github/ropensci/microdemic",
-	"title": "github/ropensci/microdemic",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/microdemic",
-	"content": "microsoft academic client"
+	"github/blackrim/phyutility": {
+	"id": "github/blackrim/phyutility",
+	"title": "github/blackrim/phyutility",
+	"url": " https://rseng.github.io/software/repository/github/blackrim/phyutility",
+	"content": "simple analyses or modifications on both phylogenetic trees and data matrices"
 	},
-	"github/ropensci/bibtex": {
-	"id": "github/ropensci/bibtex",
-	"title": "github/ropensci/bibtex",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/bibtex",
-	"content": "bibtex parser for R"
+	"github/szwiep/py_SBeLT": {
+	"id": "github/szwiep/py_SBeLT",
+	"title": "github/szwiep/py_SBeLT",
+	"url": " https://rseng.github.io/software/repository/github/szwiep/py_SBeLT",
+	"content": "A Markov-type numerical model of sediment particle transport in rivers"
 	},
-	"github/ropensci/EndoMineR": {
-	"id": "github/ropensci/EndoMineR",
-	"title": "github/ropensci/EndoMineR",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/EndoMineR",
-	"content": "Endoscopic and Pathological data extraction for various endo-pathological data extraction"
+	"github/loosolab/TOBIAS": {
+	"id": "github/loosolab/TOBIAS",
+	"title": "github/loosolab/TOBIAS",
+	"url": " https://rseng.github.io/software/repository/github/loosolab/TOBIAS",
+	"content": "Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal "
 	},
-	"github/ropensci/piggyback": {
-	"id": "github/ropensci/piggyback",
-	"title": "github/ropensci/piggyback",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/piggyback",
-	"content": ":package: for using large(r) data files on GitHub"
+	"github/ropensci/bold": {
+	"id": "github/ropensci/bold",
+	"title": "github/ropensci/bold",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/bold",
+	"content": "Interface to the Bold Systems barcode webservice"
 	},
-	"github/ropensci/rusda": {
-	"id": "github/ropensci/rusda",
-	"title": "github/ropensci/rusda",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rusda",
-	"content": "Interface to USDA Databases"
+	"github/ropensci/gutenbergr": {
+	"id": "github/ropensci/gutenbergr",
+	"title": "github/ropensci/gutenbergr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/gutenbergr",
+	"content": "Search and download public domain texts from Project Gutenberg"
 	},
-	"github/ropensci/UCSCXenaTools": {
-	"id": "github/ropensci/UCSCXenaTools",
-	"title": "github/ropensci/UCSCXenaTools",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/UCSCXenaTools",
-	"content": ":package: An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/"
+	"github/ropensci/phylocomr": {
+	"id": "github/ropensci/phylocomr",
+	"title": "github/ropensci/phylocomr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/phylocomr",
+	"content": "Phylocom R interface"
 	},
-	"github/ropensci/tidyhydat": {
-	"id": "github/ropensci/tidyhydat",
-	"title": "github/ropensci/tidyhydat",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/tidyhydat",
-	"content": "An R package to import Water Survey of Canada hydrometric data and make it tidy"
+	"github/ropensci/rzmq": {
+	"id": "github/ropensci/rzmq",
+	"title": "github/ropensci/rzmq",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rzmq",
+	"content": "R package for ZMQ"
 	},
-	"github/ropensci/gistr": {
-	"id": "github/ropensci/gistr",
-	"title": "github/ropensci/gistr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/gistr",
-	"content": "Interact with GitHub gists from R"
+	"github/ropensci/rdataretriever": {
+	"id": "github/ropensci/rdataretriever",
+	"title": "github/ropensci/rdataretriever",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rdataretriever",
+	"content": "R interface to the Data Retriever"
 	},
-	"github/ropensci/refsplitr": {
-	"id": "github/ropensci/refsplitr",
-	"title": "github/ropensci/refsplitr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/refsplitr",
-	"content": "R package for processing, organizing, and visualizing reference records downloaded from the Web of Science. "
+	"github/ropensci/baRcodeR": {
+	"id": "github/ropensci/baRcodeR",
+	"title": "github/ropensci/baRcodeR",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/baRcodeR",
+	"content": "Labeling, tracking, and organizing samples with 2D barcodes"
 	},
-	"github/ropensci/citecorp": {
-	"id": "github/ropensci/citecorp",
-	"title": "github/ropensci/citecorp",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/citecorp",
-	"content": "Client for the Open Citations Corpus"
+	"github/ropensci/skimr": {
+	"id": "github/ropensci/skimr",
+	"title": "github/ropensci/skimr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/skimr",
+	"content": "A frictionless, pipeable approach to dealing with summary statistics"
 	},
-	"github/ropensci/timefuzz": {
-	"id": "github/ropensci/timefuzz",
-	"title": "github/ropensci/timefuzz",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/timefuzz",
-	"content": "Time Travel to Test Time Dependent Code"
+	"github/ropensci/googleLanguageR": {
+	"id": "github/ropensci/googleLanguageR",
+	"title": "github/ropensci/googleLanguageR",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/googleLanguageR",
+	"content": "R client for the Google Translation API, Google Cloud Natural Language API and Google Cloud Speech API"
 	},
-	"github/ropensci/rdryad": {
-	"id": "github/ropensci/rdryad",
-	"title": "github/ropensci/rdryad",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rdryad",
-	"content": "R client for Dryad web services"
+	"github/ropensci/virtuoso": {
+	"id": "github/ropensci/virtuoso",
+	"title": "github/ropensci/virtuoso",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/virtuoso",
+	"content": ":package: Interact with Virtuoso Open Source database instances from R"
 	},
-	"github/ropensci/rfishbase": {
-	"id": "github/ropensci/rfishbase",
-	"title": "github/ropensci/rfishbase",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rfishbase",
-	"content": "R interface to the fishbase.org database"
+	"github/ropensci/rsnps": {
+	"id": "github/ropensci/rsnps",
+	"title": "github/ropensci/rsnps",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rsnps",
+	"content": "Wrapper to a number of SNP web APIs"
 	},
-	"github/ropensci/osmplotr": {
-	"id": "github/ropensci/osmplotr",
-	"title": "github/ropensci/osmplotr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/osmplotr",
-	"content": "Data visualisation using OpenStreetMap objects"
+	"github/ropensci/visdat": {
+	"id": "github/ropensci/visdat",
+	"title": "github/ropensci/visdat",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/visdat",
+	"content": "Preliminary Exploratory Visualisation of Data"
 	},
-	"github/ropensci/trufflesniffer": {
-	"id": "github/ropensci/trufflesniffer",
-	"title": "github/ropensci/trufflesniffer",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/trufflesniffer",
-	"content": "snif out truffles (secrets) [passwords, tokens, api keys]"
+	"github/ropensci/git2rdata": {
+	"id": "github/ropensci/git2rdata",
+	"title": "github/ropensci/git2rdata",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/git2rdata",
+	"content": "An R package for storing and retrieving data.frames in git repositories."
 	},
-	"github/ropensci/tidyqpcr": {
-	"id": "github/ropensci/tidyqpcr",
-	"title": "github/ropensci/tidyqpcr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/tidyqpcr",
-	"content": "quantitative PCR analysis in the tidyverse"
+	"github/ropensci/readODS": {
+	"id": "github/ropensci/readODS",
+	"title": "github/ropensci/readODS",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/readODS",
+	"content": "read ODS files into R as data.frames"
+	},
+	"github/ropensci/europepmc": {
+	"id": "github/ropensci/europepmc",
+	"title": "github/ropensci/europepmc",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/europepmc",
+	"content": "R Interface to Europe PMC RESTful Web Service"
 	},
 	"github/ropensci/skynet": {
 	"id": "github/ropensci/skynet",
@@ -10425,47 +9735,53 @@
 	"url": " https://rseng.github.io/software/repository/github/ropensci/skynet",
 	"content": "Generates networks from BTS DB1B/T-100 data"
 	},
-	"github/ropensci/hoardr": {
-	"id": "github/ropensci/hoardr",
-	"title": "github/ropensci/hoardr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/hoardr",
-	"content": "manage cached files"
+	"github/ropensci/xslt": {
+	"id": "github/ropensci/xslt",
+	"title": "github/ropensci/xslt",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/xslt",
+	"content": "Extension of xml2 package for xsl transformations"
 	},
-	"github/ropensci/rmangal": {
-	"id": "github/ropensci/rmangal",
-	"title": "github/ropensci/rmangal",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rmangal",
-	"content": "Retrieve and explore data from the ecological interactions database MANGAL"
+	"github/ropensci/seasl": {
+	"id": "github/ropensci/seasl",
+	"title": "github/ropensci/seasl",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/seasl",
+	"content": "Load CSL styles and locales in R, and inspect contents"
 	},
-	"github/ropensci/aRxiv": {
-	"id": "github/ropensci/aRxiv",
-	"title": "github/ropensci/aRxiv",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/aRxiv",
-	"content": "Programmatic interface to the Arxiv API"
+	"github/ropensci/rgnparser": {
+	"id": "github/ropensci/rgnparser",
+	"title": "github/ropensci/rgnparser",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rgnparser",
+	"content": "Parse scientific names using gnparser (https://github.com/gnames/gnparser)"
 	},
-	"github/ropensci/rnpn": {
-	"id": "github/ropensci/rnpn",
-	"title": "github/ropensci/rnpn",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rnpn",
-	"content": "R client for the National Phenology Network database API"
+	"github/ropensci/ghql": {
+	"id": "github/ropensci/ghql",
+	"title": "github/ropensci/ghql",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/ghql",
+	"content": "GraphQL R client"
 	},
-	"github/ropensci/RSelenium": {
-	"id": "github/ropensci/RSelenium",
-	"title": "github/ropensci/RSelenium",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/RSelenium",
-	"content": "An R client for Selenium Remote WebDriver"
+	"github/ropensci/epubr": {
+	"id": "github/ropensci/epubr",
+	"title": "github/ropensci/epubr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/epubr",
+	"content": "Read EPUB files in R"
 	},
-	"github/ropensci/unifir": {
-	"id": "github/ropensci/unifir",
-	"title": "github/ropensci/unifir",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/unifir",
-	"content": "A unifying interface for calling Unity from R"
+	"github/ropensci/DoOR.data": {
+	"id": "github/ropensci/DoOR.data",
+	"title": "github/ropensci/DoOR.data",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/DoOR.data",
+	"content": "R package containing the data for the Database of Odor Responses"
 	},
-	"github/ropensci/fauxpas": {
-	"id": "github/ropensci/fauxpas",
-	"title": "github/ropensci/fauxpas",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/fauxpas",
-	"content": "fauxpas does http errors"
+	"github/ropensci/antanym": {
+	"id": "github/ropensci/antanym",
+	"title": "github/ropensci/antanym",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/antanym",
+	"content": "R package for Antarctic geographic placenames"
+	},
+	"github/ropensci/piggyback": {
+	"id": "github/ropensci/piggyback",
+	"title": "github/ropensci/piggyback",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/piggyback",
+	"content": ":package: for using large(r) data files on GitHub"
 	},
 	"github/ropensci/brranching": {
 	"id": "github/ropensci/brranching",
@@ -10473,59 +9789,89 @@
 	"url": " https://rseng.github.io/software/repository/github/ropensci/brranching",
 	"content": "I can haz all the phylogenies"
 	},
-	"github/ropensci/weathercan": {
-	"id": "github/ropensci/weathercan",
-	"title": "github/ropensci/weathercan",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/weathercan",
-	"content": "R package for downloading weather data from Environment and Climate Change Canada"
+	"github/ropensci/stplanr": {
+	"id": "github/ropensci/stplanr",
+	"title": "github/ropensci/stplanr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/stplanr",
+	"content": "Sustainable transport planning with R"
 	},
-	"github/ropensci/cde": {
-	"id": "github/ropensci/cde",
-	"title": "github/ropensci/cde",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/cde",
-	"content": "Repo for R package to query and download WFD data from the EA Catchment Data Explorer site"
+	"github/ropensci/getCRUCLdata": {
+	"id": "github/ropensci/getCRUCLdata",
+	"title": "github/ropensci/getCRUCLdata",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/getCRUCLdata",
+	"content": "CRU CL v. 2.0 Climatology Client for R"
 	},
-	"github/ropensci/rsat": {
-	"id": "github/ropensci/rsat",
-	"title": "github/ropensci/rsat",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rsat",
-	"content": "Dealing with Multiplatform Satellite Images from Landsat, MODIS, and Sentinel "
+	"github/ropensci/rnpn": {
+	"id": "github/ropensci/rnpn",
+	"title": "github/ropensci/rnpn",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rnpn",
+	"content": "R client for the National Phenology Network database API"
 	},
-	"github/ropensci/virtuoso": {
-	"id": "github/ropensci/virtuoso",
-	"title": "github/ropensci/virtuoso",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/virtuoso",
-	"content": ":package: Interact with Virtuoso Open Source database instances from R"
+	"github/ropensci/weatherOz": {
+	"id": "github/ropensci/weatherOz",
+	"title": "github/ropensci/weatherOz",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/weatherOz",
+	"content": "An API Client for Australian Weather and Climate Data Resources"
 	},
-	"github/ropensci/infx": {
-	"id": "github/ropensci/infx",
-	"title": "github/ropensci/infx",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/infx",
-	"content": "Access to InfectX/TargetInfectX screening data from R"
+	"github/ropensci/awardFindR": {
+	"id": "github/ropensci/awardFindR",
+	"title": "github/ropensci/awardFindR",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/awardFindR",
+	"content": "Scan multiple online grant databases for relevant awards"
 	},
-	"github/ropensci/phonfieldwork": {
-	"id": "github/ropensci/phonfieldwork",
-	"title": "github/ropensci/phonfieldwork",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/phonfieldwork",
-	"content": "R package for phonetic research and experimenting"
+	"github/ropensci/getlandsat": {
+	"id": "github/ropensci/getlandsat",
+	"title": "github/ropensci/getlandsat",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/getlandsat",
+	"content": "get landsat 8 images and metadata"
 	},
-	"github/ropensci/mapr": {
-	"id": "github/ropensci/mapr",
-	"title": "github/ropensci/mapr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/mapr",
-	"content": "Map species occurrence data"
+	"github/ropensci/CoordinateCleaner": {
+	"id": "github/ropensci/CoordinateCleaner",
+	"title": "github/ropensci/CoordinateCleaner",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/CoordinateCleaner",
+	"content": "Automated flagging of common spatial and temporal errors in biological and palaeontological collection data, for the use in conservation, ecology and palaeontology."
 	},
-	"github/ropensci/rdataretriever": {
-	"id": "github/ropensci/rdataretriever",
-	"title": "github/ropensci/rdataretriever",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rdataretriever",
-	"content": "R interface to the Data Retriever"
+	"github/ropensci/jsonld": {
+	"id": "github/ropensci/jsonld",
+	"title": "github/ropensci/jsonld",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/jsonld",
+	"content": "R wrapper for jsonld.js JavaScript library"
+	},
+	"github/ropensci/gittargets": {
+	"id": "github/ropensci/gittargets",
+	"title": "github/ropensci/gittargets",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/gittargets",
+	"content": "Data version control for reproducible analysis pipelines in R with {targets}."
+	},
+	"github/ropensci/chirps": {
+	"id": "github/ropensci/chirps",
+	"title": "github/ropensci/chirps",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/chirps",
+	"content": "API Client for CHIRPS"
+	},
+	"github/ropensci/colocr": {
+	"id": "github/ropensci/colocr",
+	"title": "github/ropensci/colocr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/colocr",
+	"content": "An R package for conducting co-localization analysis. Edit"
+	},
+	"github/ropensci/rdatacite": {
+	"id": "github/ropensci/rdatacite",
+	"title": "github/ropensci/rdatacite",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rdatacite",
+	"content": "Wrapper to DataCite metadata"
 	},
-	"github/ropensci/textreuse": {
-	"id": "github/ropensci/textreuse",
-	"title": "github/ropensci/textreuse",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/textreuse",
-	"content": "Detect text reuse and document similarity"
+	"github/ropensci/rorcid": {
+	"id": "github/ropensci/rorcid",
+	"title": "github/ropensci/rorcid",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rorcid",
+	"content": "A programmatic interface the Orcid.org API"
+	},
+	"github/ropensci/unrtf": {
+	"id": "github/ropensci/unrtf",
+	"title": "github/ropensci/unrtf",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/unrtf",
+	"content": "Wrapper for &#39;unrtf&#39; utility to extract text from RTF documents"
 	},
 	"github/ropensci/natserv": {
 	"id": "github/ropensci/natserv",
@@ -10533,41 +9879,47 @@
 	"url": " https://rseng.github.io/software/repository/github/ropensci/natserv",
 	"content": "NatureServe R client"
 	},
-	"github/ropensci/seasl": {
-	"id": "github/ropensci/seasl",
-	"title": "github/ropensci/seasl",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/seasl",
-	"content": "Load CSL styles and locales in R, and inspect contents"
+	"github/ropensci/conditionz": {
+	"id": "github/ropensci/conditionz",
+	"title": "github/ropensci/conditionz",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/conditionz",
+	"content": "control how many times conditions are thrown"
 	},
-	"github/ropensci/rAvis": {
-	"id": "github/ropensci/rAvis",
-	"title": "github/ropensci/rAvis",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rAvis",
-	"content": "rAvis: an R-package to download the information stored in “proyectoavis”, a citizen science bird project. "
+	"github/ropensci/ckanr": {
+	"id": "github/ropensci/ckanr",
+	"title": "github/ropensci/ckanr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/ckanr",
+	"content": "R client for the CKAN API"
 	},
-	"github/ropensci/c14bazAAR": {
-	"id": "github/ropensci/c14bazAAR",
-	"title": "github/ropensci/c14bazAAR",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/c14bazAAR",
-	"content": "R Package - Download and Prepare C14 Dates from Different Source Databases"
+	"github/ropensci/katex": {
+	"id": "github/ropensci/katex",
+	"title": "github/ropensci/katex",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/katex",
+	"content": "Server side math to html rendering in R"
 	},
-	"github/ropensci/refimpact": {
-	"id": "github/ropensci/refimpact",
-	"title": "github/ropensci/refimpact",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/refimpact",
-	"content": "API wrapper for UK Research Excellence Framework 2014 Impact Case Studies Database"
+	"github/ropensci/UCSCXenaTools": {
+	"id": "github/ropensci/UCSCXenaTools",
+	"title": "github/ropensci/UCSCXenaTools",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/UCSCXenaTools",
+	"content": ":package: An R package for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq https://cran.r-project.org/web/packages/UCSCXenaTools/"
 	},
-	"github/ropensci/slopes": {
-	"id": "github/ropensci/slopes",
-	"title": "github/ropensci/slopes",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/slopes",
-	"content": "Package to calculate slopes of roads, rivers and trajectories"
+	"github/ropensci/tacmagic": {
+	"id": "github/ropensci/tacmagic",
+	"title": "github/ropensci/tacmagic",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/tacmagic",
+	"content": "tacmagic: PET Analysis in R"
 	},
-	"github/ropensci/USAboundaries": {
-	"id": "github/ropensci/USAboundaries",
-	"title": "github/ropensci/USAboundaries",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/USAboundaries",
-	"content": "Historical and Contemporary Boundaries of the United States of America"
+	"github/ropensci/ijtiff": {
+	"id": "github/ropensci/ijtiff",
+	"title": "github/ropensci/ijtiff",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/ijtiff",
+	"content": "An R Package for general purpose TIFF file I/O which plays nice with ImageJ"
+	},
+	"github/ropensci/crul": {
+	"id": "github/ropensci/crul",
+	"title": "github/ropensci/crul",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/crul",
+	"content": "R6 based http client for R (made for developers)"
 	},
 	"github/ropensci/roadoi": {
 	"id": "github/ropensci/roadoi",
@@ -10575,167 +9927,203 @@
 	"url": " https://rseng.github.io/software/repository/github/ropensci/roadoi",
 	"content": "Use Unpaywall with R"
 	},
-	"github/ropensci/rnaturalearth": {
-	"id": "github/ropensci/rnaturalearth",
-	"title": "github/ropensci/rnaturalearth",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rnaturalearth",
-	"content": "an R package to hold and facilitate interaction with natural earth map data :earth_africa:"
+	"github/ropensci/dbhydroR": {
+	"id": "github/ropensci/dbhydroR",
+	"title": "github/ropensci/dbhydroR",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/dbhydroR",
+	"content": "R interface to the South Florida Water Management District&#39;s DBHYDRO Database :sweat_drops::palm_tree:"
 	},
-	"github/ropensci/mauricer": {
-	"id": "github/ropensci/mauricer",
-	"title": "github/ropensci/mauricer",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/mauricer",
-	"content": "Install BEAST2 packages from R"
+	"github/ropensci/geojsonio": {
+	"id": "github/ropensci/geojsonio",
+	"title": "github/ropensci/geojsonio",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/geojsonio",
+	"content": "Convert many data formats to &amp; from GeoJSON &amp; TopoJSON"
 	},
-	"github/ropensci/rgnparser": {
-	"id": "github/ropensci/rgnparser",
-	"title": "github/ropensci/rgnparser",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rgnparser",
-	"content": "Parse scientific names using gnparser (https://github.com/gnames/gnparser)"
+	"github/ropensci/spocc": {
+	"id": "github/ropensci/spocc",
+	"title": "github/ropensci/spocc",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/spocc",
+	"content": "Species occurrence data toolkit for R"
 	},
-	"github/ropensci/colocr": {
-	"id": "github/ropensci/colocr",
-	"title": "github/ropensci/colocr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/colocr",
-	"content": "An R package for conducting co-localization analysis. Edit"
+	"github/ropensci/staypuft": {
+	"id": "github/ropensci/staypuft",
+	"title": "github/ropensci/staypuft",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/staypuft",
+	"content": "convert objects to and from R data structures"
 	},
-	"github/ropensci/circle": {
-	"id": "github/ropensci/circle",
-	"title": "github/ropensci/circle",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/circle",
-	"content": "R client package for the Circle CI API"
+	"github/ropensci/bomrang": {
+	"id": "github/ropensci/bomrang",
+	"title": "github/ropensci/bomrang",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/bomrang",
+	"content": "Australian government Bureau of Meteorology (BOM) data client for R"
 	},
-	"github/ropensci/treestartr": {
-	"id": "github/ropensci/treestartr",
-	"title": "github/ropensci/treestartr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/treestartr",
-	"content": "An R package for making starting trees from combined molecular, morphological and stratigraphic data"
+	"github/ropensci/rppo": {
+	"id": "github/ropensci/rppo",
+	"title": "github/ropensci/rppo",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rppo",
+	"content": "R package for accessing PPO data store"
 	},
-	"github/ropensci/jqr": {
-	"id": "github/ropensci/jqr",
-	"title": "github/ropensci/jqr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/jqr",
-	"content": "R interface to jq "
+	"github/ropensci/cchecks": {
+	"id": "github/ropensci/cchecks",
+	"title": "github/ropensci/cchecks",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/cchecks",
+	"content": "R client for the cranchecks.info API"
 	},
-	"github/ropensci/neotoma": {
-	"id": "github/ropensci/neotoma",
-	"title": "github/ropensci/neotoma",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/neotoma",
-	"content": "Programmatic R interface to the Neotoma Paleoecological Database."
+	"github/ropensci/unifir": {
+	"id": "github/ropensci/unifir",
+	"title": "github/ropensci/unifir",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/unifir",
+	"content": "A unifying interface for calling Unity from R"
 	},
-	"github/ropensci/jstor": {
-	"id": "github/ropensci/jstor",
-	"title": "github/ropensci/jstor",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/jstor",
-	"content": "Import journal data from DfR (JSTOR)"
+	"github/ropensci/smapr": {
+	"id": "github/ropensci/smapr",
+	"title": "github/ropensci/smapr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/smapr",
+	"content": "An R package for acquisition and processing of NASA SMAP data"
 	},
-	"github/ropensci/magick": {
-	"id": "github/ropensci/magick",
-	"title": "github/ropensci/magick",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/magick",
-	"content": "Magic, madness, heaven, sin"
+	"github/ropensci/rrricanesdata": {
+	"id": "github/ropensci/rrricanesdata",
+	"title": "github/ropensci/rrricanesdata",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rrricanesdata",
+	"content": "Supporting dataset for R package rrricanes"
 	},
-	"github/ropensci/essurvey": {
-	"id": "github/ropensci/essurvey",
-	"title": "github/ropensci/essurvey",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/essurvey",
-	"content": "Download data from the European Social Survey"
+	"github/ropensci/tiler": {
+	"id": "github/ropensci/tiler",
+	"title": "github/ropensci/tiler",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/tiler",
+	"content": "Generate geographic and non-geographic map tiles from R"
 	},
-	"github/ropensci/robotstxt": {
-	"id": "github/ropensci/robotstxt",
-	"title": "github/ropensci/robotstxt",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/robotstxt",
-	"content": "robots.txt file parsing and checking for R"
+	"github/ropensci/babette": {
+	"id": "github/ropensci/babette",
+	"title": "github/ropensci/babette",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/babette",
+	"content": "babette is an R package to work with BEAST2"
 	},
-	"github/ropensci/codemetar": {
-	"id": "github/ropensci/codemetar",
-	"title": "github/ropensci/codemetar",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/codemetar",
-	"content": "an R package for generating and working with codemeta"
+	"github/ropensci/aRxiv": {
+	"id": "github/ropensci/aRxiv",
+	"title": "github/ropensci/aRxiv",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/aRxiv",
+	"content": "Programmatic interface to the Arxiv API"
 	},
-	"github/ropensci/bold": {
-	"id": "github/ropensci/bold",
-	"title": "github/ropensci/bold",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/bold",
-	"content": "Interface to the Bold Systems barcode webservice"
+	"github/ropensci/opentripplanner": {
+	"id": "github/ropensci/opentripplanner",
+	"title": "github/ropensci/opentripplanner",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/opentripplanner",
+	"content": "An API wrapper for OpenTripPlanner (OTP) as an R package"
 	},
-	"github/ropensci/onekp": {
-	"id": "github/ropensci/onekp",
-	"title": "github/ropensci/onekp",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/onekp",
-	"content": "Access sequences from the 1000 Plant Initiative (1KP)"
+	"github/ropensci/Rpolyhedra": {
+	"id": "github/ropensci/Rpolyhedra",
+	"title": "github/ropensci/Rpolyhedra",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/Rpolyhedra",
+	"content": "A polyhedra database scraped from public available sources using R6 (OOP) and &#39;rgl&#39; visualizing capabilities. "
 	},
-	"github/ropensci/bowerbird": {
-	"id": "github/ropensci/bowerbird",
-	"title": "github/ropensci/bowerbird",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/bowerbird",
-	"content": "Keep a collection of sparkly data resources"
+	"github/ropensci/tabulizer": {
+	"id": "github/ropensci/tabulizer",
+	"title": "github/ropensci/tabulizer",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/tabulizer",
+	"content": "Bindings for Tabula PDF Table Extractor Library"
 	},
-	"github/ropensci/medrxivr": {
-	"id": "github/ropensci/medrxivr",
-	"title": "github/ropensci/medrxivr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/medrxivr",
-	"content": "Access and search medRxiv and bioRxiv preprint data"
+	"github/ropensci/tif": {
+	"id": "github/ropensci/tif",
+	"title": "github/ropensci/tif",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/tif",
+	"content": "Text Interchange Formats"
 	},
-	"github/ropensci/osmapiR": {
-	"id": "github/ropensci/osmapiR",
-	"title": "github/ropensci/osmapiR",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/osmapiR",
-	"content": "An R interface to OpenStreetMap API for fetching and saving data from/to the OpenStreetMap database"
+	"github/ropensci/rbhl": {
+	"id": "github/ropensci/rbhl",
+	"title": "github/ropensci/rbhl",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rbhl",
+	"content": "R interface to the Biodiversity Heritage Library (BHL) API"
 	},
-	"github/ropensci/writexl": {
-	"id": "github/ropensci/writexl",
-	"title": "github/ropensci/writexl",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/writexl",
-	"content": "Portable, light-weight data frame to xlsx exporter for R"
+	"github/ropensci/weathercan": {
+	"id": "github/ropensci/weathercan",
+	"title": "github/ropensci/weathercan",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/weathercan",
+	"content": "R package for downloading weather data from Environment and Climate Change Canada"
 	},
-	"github/ropensci/rfema": {
-	"id": "github/ropensci/rfema",
-	"title": "github/ropensci/rfema",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rfema",
-	"content": " rfema allows users to access The Federal Emergency Management Agency&#39;s (FEMA)  publicly available data through their API. The package provides a set of functions to easily navigate and access data  from the National Flood Insurance Program along and FEMA&#39;s various disaster aid programs."
+	"github/ropensci/bittrex": {
+	"id": "github/ropensci/bittrex",
+	"title": "github/ropensci/bittrex",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/bittrex",
+	"content": "A R Client for the Bittrex Crypto-Currency Exchange"
 	},
-	"github/ropensci/sofa": {
-	"id": "github/ropensci/sofa",
-	"title": "github/ropensci/sofa",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/sofa",
-	"content": "easy R interface to CouchDB"
+	"github/ropensci/jstor": {
+	"id": "github/ropensci/jstor",
+	"title": "github/ropensci/jstor",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/jstor",
+	"content": "Import journal data from DfR (JSTOR)"
 	},
-	"github/ropensci/chromer": {
-	"id": "github/ropensci/chromer",
-	"title": "github/ropensci/chromer",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/chromer",
-	"content": "package for interacting with the chromosome counts database (CCDB) at http://ccdb.tau.ac.il"
+	"github/ropensci/cleanEHR": {
+	"id": "github/ropensci/cleanEHR",
+	"title": "github/ropensci/cleanEHR",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/cleanEHR",
+	"content": "Essential tools and utility functions to facilitate the data processing pipeline, data cleaning and data analysing of clinical data from CC-HIC"
 	},
-	"github/ropensci/rrlite": {
-	"id": "github/ropensci/rrlite",
-	"title": "github/ropensci/rrlite",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rrlite",
-	"content": "R interface to rlite https://github.com/seppo0010/rlite"
+	"github/ropensci/zbank": {
+	"id": "github/ropensci/zbank",
+	"title": "github/ropensci/zbank",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/zbank",
+	"content": "ZooBank R client"
 	},
-	"github/ropensci/NLMR": {
-	"id": "github/ropensci/NLMR",
-	"title": "github/ropensci/NLMR",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/NLMR",
-	"content": "📦 R package to simulate neutral landscape models 🏔"
+	"github/ropensci/outsider.base": {
+	"id": "github/ropensci/outsider.base",
+	"title": "github/ropensci/outsider.base",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/outsider.base",
+	"content": "Base package for `outsider`"
 	},
-	"github/ropensci/getlandsat": {
-	"id": "github/ropensci/getlandsat",
-	"title": "github/ropensci/getlandsat",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/getlandsat",
-	"content": "get landsat 8 images and metadata"
+	"github/ropensci/taxizedb": {
+	"id": "github/ropensci/taxizedb",
+	"title": "github/ropensci/taxizedb",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/taxizedb",
+	"content": "Tools for Working with Taxonomic SQL Databases"
 	},
-	"github/ropensci/ramlegacy": {
-	"id": "github/ropensci/ramlegacy",
-	"title": "github/ropensci/ramlegacy",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/ramlegacy",
-	"content": "R :package: to download, cache and read in different versions of the RAM Legacy Stock Assessment Data Base, an online compilation of stock assessment results for commercially exploited marine populations from around the world."
+	"github/ropensci/helminthR": {
+	"id": "github/ropensci/helminthR",
+	"title": "github/ropensci/helminthR",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/helminthR",
+	"content": "Accesses parasite occurrence records from the London Natural History Museum&#39;s Host-Parasite database, which contains over a quarter of a million helminth records."
 	},
-	"github/ropensci/elastic": {
-	"id": "github/ropensci/elastic",
-	"title": "github/ropensci/elastic",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/elastic",
-	"content": "R client for the Elasticsearch HTTP API"
+	"github/ropensci/rmangal": {
+	"id": "github/ropensci/rmangal",
+	"title": "github/ropensci/rmangal",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rmangal",
+	"content": "Retrieve and explore data from the ecological interactions database MANGAL"
+	},
+	"github/ropensci/outsider": {
+	"id": "github/ropensci/outsider",
+	"title": "github/ropensci/outsider",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/outsider",
+	"content": ":black_square_button::registered: Install and run programs, outside of R, inside of R"
+	},
+	"github/ropensci/rWBclimate": {
+	"id": "github/ropensci/rWBclimate",
+	"title": "github/ropensci/rWBclimate",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rWBclimate",
+	"content": "R interface for the World Bank climate data"
+	},
+	"github/ropensci/mcbette": {
+	"id": "github/ropensci/mcbette",
+	"title": "github/ropensci/mcbette",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/mcbette",
+	"content": "Model Comparison using babette"
+	},
+	"github/ropensci/tinkr": {
+	"id": "github/ropensci/tinkr",
+	"title": "github/ropensci/tinkr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/tinkr",
+	"content": "Convert (R)Markdown files to XML, edit them, write them back as (R)Markdown"
+	},
+	"github/ropensci/rb3": {
+	"id": "github/ropensci/rb3",
+	"title": "github/ropensci/rb3",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rb3",
+	"content": "A bunch of downloaders and parsers for data delivered from B3"
+	},
+	"github/ropensci/opencv": {
+	"id": "github/ropensci/opencv",
+	"title": "github/ropensci/opencv",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/opencv",
+	"content": "R bindings for OpenCV"
 	},
 	"github/ropensci/coder": {
 	"id": "github/ropensci/coder",
@@ -10743,149 +10131,131 @@
 	"url": " https://rseng.github.io/software/repository/github/ropensci/coder",
 	"content": "Classification of Cases into Deterministic Categories"
 	},
-	"github/ropensci/chirps": {
-	"id": "github/ropensci/chirps",
-	"title": "github/ropensci/chirps",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/chirps",
-	"content": "API Client for CHIRPS"
-	},
-	"github/ropensci/geojsonlint": {
-	"id": "github/ropensci/geojsonlint",
-	"title": "github/ropensci/geojsonlint",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/geojsonlint",
-	"content": "GeoJSON linting for R (THIS IS NOT THE SRC FOR geojsonlint.com)"
-	},
-	"github/ropensci/babette": {
-	"id": "github/ropensci/babette",
-	"title": "github/ropensci/babette",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/babette",
-	"content": "babette is an R package to work with BEAST2"
-	},
-	"github/ropensci/cld2": {
-	"id": "github/ropensci/cld2",
-	"title": "github/ropensci/cld2",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/cld2",
-	"content": "R Wrapper for Google&#39;s Compact Language Detector 2"
+	"github/ropensci/rglobi": {
+	"id": "github/ropensci/rglobi",
+	"title": "github/ropensci/rglobi",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rglobi",
+	"content": "R library to access species interaction data of http://globalbioticinteractions.org"
 	},
-	"github/ropensci/rdflib": {
-	"id": "github/ropensci/rdflib",
-	"title": "github/ropensci/rdflib",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rdflib",
-	"content": ":package: High level wrapper around the redland package for common rdf applications "
+	"github/ropensci/opencage": {
+	"id": "github/ropensci/opencage",
+	"title": "github/ropensci/opencage",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/opencage",
+	"content": ":globe_with_meridians: R package for the OpenCage API -- both forward and reverse geocoding :globe_with_meridians:"
 	},
-	"github/ropensci/cchecks": {
-	"id": "github/ropensci/cchecks",
-	"title": "github/ropensci/cchecks",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/cchecks",
-	"content": "R client for the cranchecks.info API"
+	"github/ropensci/rgbif": {
+	"id": "github/ropensci/rgbif",
+	"title": "github/ropensci/rgbif",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rgbif",
+	"content": "Interface to the Global Biodiversity Information Facility API"
 	},
-	"github/ropensci/rnaturalearthhires": {
-	"id": "github/ropensci/rnaturalearthhires",
-	"title": "github/ropensci/rnaturalearthhires",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rnaturalearthhires",
-	"content": "high resolution naturalearth data for rnaturalearth"
+	"github/ropensci/dbparser": {
+	"id": "github/ropensci/dbparser",
+	"title": "github/ropensci/dbparser",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/dbparser",
+	"content": "Source code for the R package, &#34;dbparser&#34; (i.e. DrugBank Parser)"
 	},
-	"github/ropensci/cffr": {
-	"id": "github/ropensci/cffr",
-	"title": "github/ropensci/cffr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/cffr",
-	"content": "Generate Citation File Format (cff) Metadata for R Packages"
+	"github/ropensci/rcrossref": {
+	"id": "github/ropensci/rcrossref",
+	"title": "github/ropensci/rcrossref",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rcrossref",
+	"content": "R client for various CrossRef APIs"
 	},
-	"github/ropensci/ots": {
-	"id": "github/ropensci/ots",
-	"title": "github/ropensci/ots",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/ots",
-	"content": "ocean time series datasets"
+	"github/ropensci/antiword": {
+	"id": "github/ropensci/antiword",
+	"title": "github/ropensci/antiword",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/antiword",
+	"content": "R wrapper for antiword utility"
 	},
-	"github/ropensci/handlr": {
-	"id": "github/ropensci/handlr",
-	"title": "github/ropensci/handlr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/handlr",
-	"content": "convert among citation formats"
+	"github/ropensci/tesseract": {
+	"id": "github/ropensci/tesseract",
+	"title": "github/ropensci/tesseract",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/tesseract",
+	"content": "Bindings to Tesseract OCR engine for R"
 	},
-	"github/ropensci/git2r": {
-	"id": "github/ropensci/git2r",
-	"title": "github/ropensci/git2r",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/git2r",
-	"content": "R bindings to the libgit2 library"
+	"github/ropensci/rinat": {
+	"id": "github/ropensci/rinat",
+	"title": "github/ropensci/rinat",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rinat",
+	"content": "A programmatic interface to iNaturalist"
 	},
-	"github/ropensci/smapr": {
-	"id": "github/ropensci/smapr",
-	"title": "github/ropensci/smapr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/smapr",
-	"content": "An R package for acquisition and processing of NASA SMAP data"
+	"github/ropensci/rfigshare": {
+	"id": "github/ropensci/rfigshare",
+	"title": "github/ropensci/rfigshare",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rfigshare",
+	"content": "Programmatic interface for Figshare"
 	},
-	"github/ropensci/rnoaa": {
-	"id": "github/ropensci/rnoaa",
-	"title": "github/ropensci/rnoaa",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rnoaa",
-	"content": "R interface to many NOAA data APIs"
+	"github/ropensci/pixelclasser": {
+	"id": "github/ropensci/pixelclasser",
+	"title": "github/ropensci/pixelclasser",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/pixelclasser",
+	"content": "Classifies Image Pixels by Colour"
 	},
-	"github/ropensci/DoOR.functions": {
-	"id": "github/ropensci/DoOR.functions",
-	"title": "github/ropensci/DoOR.functions",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/DoOR.functions",
-	"content": "R package containing the functions used to build the Database of Odor Responses"
+	"github/ropensci/assertr": {
+	"id": "github/ropensci/assertr",
+	"title": "github/ropensci/assertr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/assertr",
+	"content": "Assertive programming for R analysis pipelines"
 	},
-	"github/ropensci/geojsonio": {
-	"id": "github/ropensci/geojsonio",
-	"title": "github/ropensci/geojsonio",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/geojsonio",
-	"content": "Convert many data formats to &amp; from GeoJSON &amp; TopoJSON"
+	"github/ropensci/lightr": {
+	"id": "github/ropensci/lightr",
+	"title": "github/ropensci/lightr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/lightr",
+	"content": "Import spectral data and related metadata in R"
 	},
-	"github/ropensci/weatherOz": {
-	"id": "github/ropensci/weatherOz",
-	"title": "github/ropensci/weatherOz",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/weatherOz",
-	"content": "An API Client for Australian Weather and Climate Data Resources"
+	"github/ropensci/EndoMineR": {
+	"id": "github/ropensci/EndoMineR",
+	"title": "github/ropensci/EndoMineR",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/EndoMineR",
+	"content": "Endoscopic and Pathological data extraction for various endo-pathological data extraction"
 	},
-	"github/ropensci/visdat": {
-	"id": "github/ropensci/visdat",
-	"title": "github/ropensci/visdat",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/visdat",
-	"content": "Preliminary Exploratory Visualisation of Data"
+	"github/ropensci/tidyqpcr": {
+	"id": "github/ropensci/tidyqpcr",
+	"title": "github/ropensci/tidyqpcr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/tidyqpcr",
+	"content": "quantitative PCR analysis in the tidyverse"
 	},
-	"github/ropensci/rb3": {
-	"id": "github/ropensci/rb3",
-	"title": "github/ropensci/rb3",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rb3",
-	"content": "A bunch of downloaders and parsers for data delivered from B3"
+	"github/ropensci/essurvey": {
+	"id": "github/ropensci/essurvey",
+	"title": "github/ropensci/essurvey",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/essurvey",
+	"content": "Download data from the European Social Survey"
 	},
-	"github/ropensci/addressable": {
-	"id": "github/ropensci/addressable",
-	"title": "github/ropensci/addressable",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/addressable",
-	"content": "Email Address Validation"
+	"github/ropensci/circle": {
+	"id": "github/ropensci/circle",
+	"title": "github/ropensci/circle",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/circle",
+	"content": "R client package for the Circle CI API"
 	},
-	"github/ropensci/spiro": {
-	"id": "github/ropensci/spiro",
-	"title": "github/ropensci/spiro",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/spiro",
-	"content": "Work with data from cardiopulmonary exercise testing"
+	"github/ropensci/sofa": {
+	"id": "github/ropensci/sofa",
+	"title": "github/ropensci/sofa",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/sofa",
+	"content": "easy R interface to CouchDB"
 	},
-	"github/ropensci/outsider.devtools": {
-	"id": "github/ropensci/outsider.devtools",
-	"title": "github/ropensci/outsider.devtools",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/outsider.devtools",
-	"content": "Build your own modules for `outsider`"
+	"github/ropensci/NLMR": {
+	"id": "github/ropensci/NLMR",
+	"title": "github/ropensci/NLMR",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/NLMR",
+	"content": "📦 R package to simulate neutral landscape models 🏔"
 	},
-	"github/ropensci/epubr": {
-	"id": "github/ropensci/epubr",
-	"title": "github/ropensci/epubr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/epubr",
-	"content": "Read EPUB files in R"
+	"github/ropensci/handlr": {
+	"id": "github/ropensci/handlr",
+	"title": "github/ropensci/handlr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/handlr",
+	"content": "convert among citation formats"
 	},
-	"github/ropensci/tarchetypes": {
-	"id": "github/ropensci/tarchetypes",
-	"title": "github/ropensci/tarchetypes",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/tarchetypes",
-	"content": "Archetypes for targets and pipelines"
+	"github/ropensci/Rclean": {
+	"id": "github/ropensci/Rclean",
+	"title": "github/ropensci/Rclean",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/Rclean",
+	"content": "Isolate essential code to re-produce specific results."
 	},
-	"github/ropensci/rvertnet": {
-	"id": "github/ropensci/rvertnet",
-	"title": "github/ropensci/rvertnet",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rvertnet",
-	"content": "Wrapper to the VertNet API"
+	"github/ropensci/BaseSet": {
+	"id": "github/ropensci/BaseSet",
+	"title": "github/ropensci/BaseSet",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/BaseSet",
+	"content": "Provides classes for working with sets"
 	},
 	"github/ropensci/cyphr": {
 	"id": "github/ropensci/cyphr",
@@ -10893,107 +10263,71 @@
 	"url": " https://rseng.github.io/software/repository/github/ropensci/cyphr",
 	"content": ":shipit: Humane encryption"
 	},
-	"github/ropensci/popler": {
-	"id": "github/ropensci/popler",
-	"title": "github/ropensci/popler",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/popler",
-	"content": "The R package to browse and query the popler database"
-	},
-	"github/ropensci/hddtools": {
-	"id": "github/ropensci/hddtools",
-	"title": "github/ropensci/hddtools",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/hddtools",
-	"content": "Hydrological Data Discovery Tools (R package for hydrology and open data)"
-	},
-	"github/ropensci/pubchunks": {
-	"id": "github/ropensci/pubchunks",
-	"title": "github/ropensci/pubchunks",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/pubchunks",
-	"content": "Get chunks of XML format scholarly articles"
-	},
-	"github/ropensci/stplanr": {
-	"id": "github/ropensci/stplanr",
-	"title": "github/ropensci/stplanr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/stplanr",
-	"content": "Sustainable transport planning with R"
-	},
-	"github/ropensci/excluder": {
-	"id": "github/ropensci/excluder",
-	"title": "github/ropensci/excluder",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/excluder",
-	"content": "Checks for Exclusion Criteria in Online Data"
-	},
-	"github/ropensci/tacmagic": {
-	"id": "github/ropensci/tacmagic",
-	"title": "github/ropensci/tacmagic",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/tacmagic",
-	"content": "tacmagic: PET Analysis in R"
-	},
-	"github/ropensci/nomisr": {
-	"id": "github/ropensci/nomisr",
-	"title": "github/ropensci/nomisr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/nomisr",
-	"content": "Access UK official statistics from the Nomis database through R."
+	"github/ropensci/rfema": {
+	"id": "github/ropensci/rfema",
+	"title": "github/ropensci/rfema",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rfema",
+	"content": " rfema allows users to access The Federal Emergency Management Agency&#39;s (FEMA)  publicly available data through their API. The package provides a set of functions to easily navigate and access data  from the National Flood Insurance Program along and FEMA&#39;s various disaster aid programs."
 	},
-	"github/ropensci/terrainr": {
-	"id": "github/ropensci/terrainr",
-	"title": "github/ropensci/terrainr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/terrainr",
-	"content": "Get DEMs and orthoimagery from the USGS National Map, georeference your images and merge rasters, and visualize with Unity 3D"
+	"github/ropensci/elastic": {
+	"id": "github/ropensci/elastic",
+	"title": "github/ropensci/elastic",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/elastic",
+	"content": "R client for the Elasticsearch HTTP API"
 	},
-	"github/ropensci/ezknitr": {
-	"id": "github/ropensci/ezknitr",
-	"title": "github/ropensci/ezknitr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/ezknitr",
-	"content": "Avoid the typical working directory pain when using &#39;knitr&#39;"
+	"github/ropensci/USAboundaries": {
+	"id": "github/ropensci/USAboundaries",
+	"title": "github/ropensci/USAboundaries",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/USAboundaries",
+	"content": "Historical and Contemporary Boundaries of the United States of America"
 	},
-	"github/ropensci/geonames": {
-	"id": "github/ropensci/geonames",
-	"title": "github/ropensci/geonames",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/geonames",
-	"content": "R package for accessing the geonames.org API"
+	"github/ropensci/spelling": {
+	"id": "github/ropensci/spelling",
+	"title": "github/ropensci/spelling",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/spelling",
+	"content": "Tools for Spell Checking in R"
 	},
-	"github/ropensci/tidync": {
-	"id": "github/ropensci/tidync",
-	"title": "github/ropensci/tidync",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/tidync",
-	"content": "NetCDF exploration and data extraction"
+	"github/ropensci/taxview": {
+	"id": "github/ropensci/taxview",
+	"title": "github/ropensci/taxview",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/taxview",
+	"content": "Summarise and visualize data sets wrt taxonomy"
 	},
-	"github/ropensci/historydata": {
-	"id": "github/ropensci/historydata",
-	"title": "github/ropensci/historydata",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/historydata",
-	"content": "Datasets for Historians"
+	"github/ropensci/cRegulome": {
+	"id": "github/ropensci/cRegulome",
+	"title": "github/ropensci/cRegulome",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/cRegulome",
+	"content": "An R package to access, manage and visualize regulome (microRNA/transcription factors)-gene correlations in cancer"
 	},
-	"github/ropensci/nodbi": {
-	"id": "github/ropensci/nodbi",
-	"title": "github/ropensci/nodbi",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/nodbi",
-	"content": "Document DBI connector for R"
+	"github/ropensci/rsat": {
+	"id": "github/ropensci/rsat",
+	"title": "github/ropensci/rsat",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rsat",
+	"content": "Dealing with Multiplatform Satellite Images from Landsat, MODIS, and Sentinel "
 	},
-	"github/ropensci/rcrossref": {
-	"id": "github/ropensci/rcrossref",
-	"title": "github/ropensci/rcrossref",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rcrossref",
-	"content": "R client for various CrossRef APIs"
+	"github/ropensci/webmockr": {
+	"id": "github/ropensci/webmockr",
+	"title": "github/ropensci/webmockr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/webmockr",
+	"content": "R library for stubbing and setting expectations on HTTP requests"
 	},
-	"github/ropensci/rfisheries": {
-	"id": "github/ropensci/rfisheries",
-	"title": "github/ropensci/rfisheries",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rfisheries",
-	"content": "package for interacting with fisheries databases at openfisheries.org"
+	"github/ropensci/pubchunks": {
+	"id": "github/ropensci/pubchunks",
+	"title": "github/ropensci/pubchunks",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/pubchunks",
+	"content": "Get chunks of XML format scholarly articles"
 	},
-	"github/ropensci/taxize": {
-	"id": "github/ropensci/taxize",
-	"title": "github/ropensci/taxize",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/taxize",
-	"content": "A taxonomic toolbelt for R"
+	"github/ropensci/beastier": {
+	"id": "github/ropensci/beastier",
+	"title": "github/ropensci/beastier",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/beastier",
+	"content": "R package to run BEAST2"
 	},
-	"github/ropensci/PostcodesioR": {
-	"id": "github/ropensci/PostcodesioR",
-	"title": "github/ropensci/PostcodesioR",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/PostcodesioR",
-	"content": "API wrapper around postcodes.io - free UK postcode lookup and geocoder"
+	"github/ropensci/tic": {
+	"id": "github/ropensci/tic",
+	"title": "github/ropensci/tic",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/tic",
+	"content": "Tasks Integrating Continuously: CI-Agnostic Workflow Definitions"
 	},
 	"github/ropensci/taxlist": {
 	"id": "github/ropensci/taxlist",
@@ -11001,29 +10335,17 @@
 	"url": " https://rseng.github.io/software/repository/github/ropensci/taxlist",
 	"content": "Handling taxonomic lists"
 	},
-	"github/ropensci/plotly": {
-	"id": "github/ropensci/plotly",
-	"title": "github/ropensci/plotly",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/plotly",
-	"content": "An interactive graphing library for R"
-	},
-	"github/ropensci/restez": {
-	"id": "github/ropensci/restez",
-	"title": "github/ropensci/restez",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/restez",
-	"content": ":sleeping: :open_file_folder: Create and Query a Local Copy of GenBank in R"
-	},
-	"github/ropensci/qpdf": {
-	"id": "github/ropensci/qpdf",
-	"title": "github/ropensci/qpdf",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/qpdf",
-	"content": "Split, Combine and Compress PDF files"
+	"github/ropensci/taxa": {
+	"id": "github/ropensci/taxa",
+	"title": "github/ropensci/taxa",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/taxa",
+	"content": "taxonomic classes for R"
 	},
-	"github/ropensci/rnassqs": {
-	"id": "github/ropensci/rnassqs",
-	"title": "github/ropensci/rnassqs",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rnassqs",
-	"content": "R interface for the USDA National Agricultural Statistical Service&#39;s (NASS) &#39;Quick Stats&#39; API (https://quickstats.nass.usda.gov/api)"
+	"github/ropensci/dittodb": {
+	"id": "github/ropensci/dittodb",
+	"title": "github/ropensci/dittodb",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/dittodb",
+	"content": "dittodb: A Test Environment for DB Queries in R"
 	},
 	"github/ropensci/tracerer": {
 	"id": "github/ropensci/tracerer",
@@ -11031,245 +10353,239 @@
 	"url": " https://rseng.github.io/software/repository/github/ropensci/tracerer",
 	"content": "tracerer, &#39;Tracer for R&#39;, is an R package to work with the output of BEAST2"
 	},
-	"github/ropensci/treedata.table": {
-	"id": "github/ropensci/treedata.table",
-	"title": "github/ropensci/treedata.table",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/treedata.table",
-	"content": "A wrapper for data.table that enables fast manipulation of  phylogenetic trees matched to data."
-	},
-	"github/ropensci/predictNMB": {
-	"id": "github/ropensci/predictNMB",
-	"title": "github/ropensci/predictNMB",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/predictNMB",
-	"content": "None"
-	},
-	"github/ropensci/antiword": {
-	"id": "github/ropensci/antiword",
-	"title": "github/ropensci/antiword",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/antiword",
-	"content": "R wrapper for antiword utility"
+	"github/ropensci/outcomerate": {
+	"id": "github/ropensci/outcomerate",
+	"title": "github/ropensci/outcomerate",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/outcomerate",
+	"content": "AAPOR Survey Outcome Rates"
 	},
-	"github/ropensci/rWBclimate": {
-	"id": "github/ropensci/rWBclimate",
-	"title": "github/ropensci/rWBclimate",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rWBclimate",
-	"content": "R interface for the World Bank climate data"
+	"github/ropensci/hydroscoper": {
+	"id": "github/ropensci/hydroscoper",
+	"title": "github/ropensci/hydroscoper",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/hydroscoper",
+	"content": "R interface to the Greek National Data Bank for Hydrometeorological Information"
 	},
-	"github/ropensci/rebird": {
-	"id": "github/ropensci/rebird",
-	"title": "github/ropensci/rebird",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rebird",
-	"content": "Wrapper to the eBird API"
+	"github/ropensci/rdefra": {
+	"id": "github/ropensci/rdefra",
+	"title": "github/ropensci/rdefra",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rdefra",
+	"content": "rdefra: Interact with the UK AIR Pollution Database from DEFRA"
 	},
-	"github/ropensci/jagstargets": {
-	"id": "github/ropensci/jagstargets",
-	"title": "github/ropensci/jagstargets",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/jagstargets",
-	"content": "Reproducible Bayesian data analysis pipelines with targets and JAGS"
+	"github/ropensci/internetarchive": {
+	"id": "github/ropensci/internetarchive",
+	"title": "github/ropensci/internetarchive",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/internetarchive",
+	"content": "Search the Internet Archive, retrieve metadata, and download files"
 	},
-	"github/ropensci/nasapower": {
-	"id": "github/ropensci/nasapower",
-	"title": "github/ropensci/nasapower",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/nasapower",
-	"content": "API Client for NASA POWER Global Meteorology, Surface Solar Energy and Climatology in R"
+	"github/ropensci/codemetar": {
+	"id": "github/ropensci/codemetar",
+	"title": "github/ropensci/codemetar",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/codemetar",
+	"content": "an R package for generating and working with codemeta"
 	},
-	"github/ropensci/rentrez": {
-	"id": "github/ropensci/rentrez",
-	"title": "github/ropensci/rentrez",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rentrez",
-	"content": "talk with NCBI entrez using R"
+	"github/ropensci/nodbi": {
+	"id": "github/ropensci/nodbi",
+	"title": "github/ropensci/nodbi",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/nodbi",
+	"content": "Document DBI connector for R"
 	},
-	"github/ropensci/graphql": {
-	"id": "github/ropensci/graphql",
-	"title": "github/ropensci/graphql",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/graphql",
-	"content": "Bindings to libgraphqlparser for R"
+	"github/ropensci/rfishbase": {
+	"id": "github/ropensci/rfishbase",
+	"title": "github/ropensci/rfishbase",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rfishbase",
+	"content": "R interface to the fishbase.org database"
 	},
-	"github/ropensci/stantargets": {
-	"id": "github/ropensci/stantargets",
-	"title": "github/ropensci/stantargets",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/stantargets",
-	"content": "Reproducible Bayesian data analysis pipelines with targets and cmdstanr"
+	"github/ropensci/treestartr": {
+	"id": "github/ropensci/treestartr",
+	"title": "github/ropensci/treestartr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/treestartr",
+	"content": "An R package for making starting trees from combined molecular, morphological and stratigraphic data"
 	},
-	"github/ropensci/RefManageR": {
-	"id": "github/ropensci/RefManageR",
-	"title": "github/ropensci/RefManageR",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/RefManageR",
-	"content": "R package RefManageR"
+	"github/ropensci/tarchetypes": {
+	"id": "github/ropensci/tarchetypes",
+	"title": "github/ropensci/tarchetypes",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/tarchetypes",
+	"content": "Archetypes for targets and pipelines"
 	},
-	"github/ropensci/censo2017": {
-	"id": "github/ropensci/censo2017",
-	"title": "github/ropensci/censo2017",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/censo2017",
-	"content": "Una Base de Datos de Alto Rendimiento del Censo 2017 de Chile."
+	"github/ropensci/rcites": {
+	"id": "github/ropensci/rcites",
+	"title": "github/ropensci/rcites",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rcites",
+	"content": ":package: R package to access the CITES Speciesplus database "
 	},
-	"github/ropensci/outsider.base": {
-	"id": "github/ropensci/outsider.base",
-	"title": "github/ropensci/outsider.base",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/outsider.base",
-	"content": "Base package for `outsider`"
+	"github/ropensci/cde": {
+	"id": "github/ropensci/cde",
+	"title": "github/ropensci/cde",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/cde",
+	"content": "Repo for R package to query and download WFD data from the EA Catchment Data Explorer site"
 	},
-	"github/ropensci/baRcodeR": {
-	"id": "github/ropensci/baRcodeR",
-	"title": "github/ropensci/baRcodeR",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/baRcodeR",
-	"content": "Labeling, tracking, and organizing samples with 2D barcodes"
+	"github/ropensci/mapscanner": {
+	"id": "github/ropensci/mapscanner",
+	"title": "github/ropensci/mapscanner",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/mapscanner",
+	"content": "R package to print maps, draw on them, and scan them back in"
 	},
-	"github/ropensci/scrubr": {
-	"id": "github/ropensci/scrubr",
-	"title": "github/ropensci/scrubr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/scrubr",
-	"content": "Clean species occurrence records"
+	"github/ropensci/rcitoid": {
+	"id": "github/ropensci/rcitoid",
+	"title": "github/ropensci/rcitoid",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rcitoid",
+	"content": "Citation data via Wikimedia using the Citoid service "
 	},
-	"github/ropensci/binman": {
-	"id": "github/ropensci/binman",
-	"title": "github/ropensci/binman",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/binman",
-	"content": "A Binary Download Manager"
+	"github/ropensci/allodb": {
+	"id": "github/ropensci/allodb",
+	"title": "github/ropensci/allodb",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/allodb",
+	"content": "An R package for biomass estimation at extratropical forest plots."
 	},
-	"github/ropensci/opencv": {
-	"id": "github/ropensci/opencv",
-	"title": "github/ropensci/opencv",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/opencv",
-	"content": "R bindings for OpenCV"
+	"github/ropensci/phylotaR": {
+	"id": "github/ropensci/phylotaR",
+	"title": "github/ropensci/phylotaR",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/phylotaR",
+	"content": "An automated pipeline for retrieving orthologous DNA sequences from GenBank in R"
 	},
-	"github/ropensci/DoOR.data": {
-	"id": "github/ropensci/DoOR.data",
-	"title": "github/ropensci/DoOR.data",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/DoOR.data",
-	"content": "R package containing the data for the Database of Odor Responses"
+	"github/ropensci/chlorpromazineR": {
+	"id": "github/ropensci/chlorpromazineR",
+	"title": "github/ropensci/chlorpromazineR",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/chlorpromazineR",
+	"content": "Calculate chlorpromazine-equivalent doses in R"
 	},
-	"github/ropensci/MtreeRing": {
-	"id": "github/ropensci/MtreeRing",
-	"title": "github/ropensci/MtreeRing",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/MtreeRing",
-	"content": " A tool for measuring tree-ring width"
+	"github/ropensci/taxize": {
+	"id": "github/ropensci/taxize",
+	"title": "github/ropensci/taxize",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/taxize",
+	"content": "A taxonomic toolbelt for R"
 	},
-	"github/ropensci/ssh": {
-	"id": "github/ropensci/ssh",
-	"title": "github/ropensci/ssh",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/ssh",
-	"content": "Native SSH client in R based on libssh"
+	"github/ropensci/cffr": {
+	"id": "github/ropensci/cffr",
+	"title": "github/ropensci/cffr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/cffr",
+	"content": "Generate Citation File Format (cff) Metadata for R Packages"
 	},
-	"github/ropensci/zbank": {
-	"id": "github/ropensci/zbank",
-	"title": "github/ropensci/zbank",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/zbank",
-	"content": "ZooBank R client"
+	"github/ropensci/isdparser": {
+	"id": "github/ropensci/isdparser",
+	"title": "github/ropensci/isdparser",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/isdparser",
+	"content": "NOAA ISD/ISH file parser"
 	},
-	"github/ropensci/jsonvalidate": {
-	"id": "github/ropensci/jsonvalidate",
-	"title": "github/ropensci/jsonvalidate",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/jsonvalidate",
-	"content": ":heavy_check_mark::interrobang: Validate JSON"
+	"github/ropensci/wateRinfo": {
+	"id": "github/ropensci/wateRinfo",
+	"title": "github/ropensci/wateRinfo",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/wateRinfo",
+	"content": "R package to download time series data from waterinfo.be"
 	},
-	"github/ropensci/tabulizer": {
-	"id": "github/ropensci/tabulizer",
-	"title": "github/ropensci/tabulizer",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/tabulizer",
-	"content": "Bindings for Tabula PDF Table Extractor Library"
+	"github/ropensci/dataaimsr": {
+	"id": "github/ropensci/dataaimsr",
+	"title": "github/ropensci/dataaimsr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/dataaimsr",
+	"content": "Australian Institute of Marine Science (AIMS) Data Platform API Client which provides easy access to AIMS Data Platform scientific data and information."
 	},
-	"github/ropensci/gitignore": {
-	"id": "github/ropensci/gitignore",
-	"title": "github/ropensci/gitignore",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/gitignore",
-	"content": "A R interface to fetch gitignore templates form gitignore.io"
+	"github/ropensci/gistr": {
+	"id": "github/ropensci/gistr",
+	"title": "github/ropensci/gistr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/gistr",
+	"content": "Interact with GitHub gists from R"
 	},
-	"github/ropensci/BaseSet": {
-	"id": "github/ropensci/BaseSet",
-	"title": "github/ropensci/BaseSet",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/BaseSet",
-	"content": "Provides classes for working with sets"
+	"github/ropensci/medrxivr": {
+	"id": "github/ropensci/medrxivr",
+	"title": "github/ropensci/medrxivr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/medrxivr",
+	"content": "Access and search medRxiv and bioRxiv preprint data"
 	},
-	"github/ropensci/tiler": {
-	"id": "github/ropensci/tiler",
-	"title": "github/ropensci/tiler",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/tiler",
-	"content": "Generate geographic and non-geographic map tiles from R"
+	"github/ropensci/rnaturalearthhires": {
+	"id": "github/ropensci/rnaturalearthhires",
+	"title": "github/ropensci/rnaturalearthhires",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rnaturalearthhires",
+	"content": "high resolution naturalearth data for rnaturalearth"
 	},
-	"github/ropensci/opencontext": {
-	"id": "github/ropensci/opencontext",
-	"title": "github/ropensci/opencontext",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/opencontext",
-	"content": "API Client for the Open Context Archeological Database"
+	"github/ropensci/writexl": {
+	"id": "github/ropensci/writexl",
+	"title": "github/ropensci/writexl",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/writexl",
+	"content": "Portable, light-weight data frame to xlsx exporter for R"
 	},
-	"github/ropensci/gutenbergr": {
-	"id": "github/ropensci/gutenbergr",
-	"title": "github/ropensci/gutenbergr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/gutenbergr",
-	"content": "Search and download public domain texts from Project Gutenberg"
+	"github/ropensci/traits": {
+	"id": "github/ropensci/traits",
+	"title": "github/ropensci/traits",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/traits",
+	"content": "Species traits data"
 	},
-	"github/ropensci/unrtf": {
-	"id": "github/ropensci/unrtf",
-	"title": "github/ropensci/unrtf",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/unrtf",
-	"content": "Wrapper for &#39;unrtf&#39; utility to extract text from RTF documents"
+	"github/ropensci/worrms": {
+	"id": "github/ropensci/worrms",
+	"title": "github/ropensci/worrms",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/worrms",
+	"content": "World Register of Marine Species R client"
 	},
-	"github/ropensci/rsnps": {
-	"id": "github/ropensci/rsnps",
-	"title": "github/ropensci/rsnps",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rsnps",
-	"content": "Wrapper to a number of SNP web APIs"
+	"github/ropensci/finch": {
+	"id": "github/ropensci/finch",
+	"title": "github/ropensci/finch",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/finch",
+	"content": "Read Darwin Core Archive files"
 	},
-	"github/ropensci/awardFindR": {
-	"id": "github/ropensci/awardFindR",
-	"title": "github/ropensci/awardFindR",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/awardFindR",
-	"content": "Scan multiple online grant databases for relevant awards"
+	"github/ropensci/rdhs": {
+	"id": "github/ropensci/rdhs",
+	"title": "github/ropensci/rdhs",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rdhs",
+	"content": "API Client and Data Munging for the Demographic and Health Survey Data"
 	},
-	"github/ropensci/rbace": {
-	"id": "github/ropensci/rbace",
-	"title": "github/ropensci/rbace",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rbace",
-	"content": "BASE R client"
+	"github/ropensci/slopes": {
+	"id": "github/ropensci/slopes",
+	"title": "github/ropensci/slopes",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/slopes",
+	"content": "Package to calculate slopes of roads, rivers and trajectories"
 	},
-	"github/ropensci/cRegulome": {
-	"id": "github/ropensci/cRegulome",
-	"title": "github/ropensci/cRegulome",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/cRegulome",
-	"content": "An R package to access, manage and visualize regulome (microRNA/transcription factors)-gene correlations in cancer"
+	"github/ropensci/rdryad": {
+	"id": "github/ropensci/rdryad",
+	"title": "github/ropensci/rdryad",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rdryad",
+	"content": "R client for Dryad web services"
 	},
-	"github/ropensci/gtfsr": {
-	"id": "github/ropensci/gtfsr",
-	"title": "github/ropensci/gtfsr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/gtfsr",
-	"content": "Package for obtaining, validating, viewing, and storing GTFS (transit) data"
+	"github/ropensci/timefuzz": {
+	"id": "github/ropensci/timefuzz",
+	"title": "github/ropensci/timefuzz",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/timefuzz",
+	"content": "Time Travel to Test Time Dependent Code"
 	},
-	"github/ropensci/wdman": {
-	"id": "github/ropensci/wdman",
-	"title": "github/ropensci/wdman",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/wdman",
-	"content": "Webdriver/Selenium Binary Manager"
+	"github/ropensci/rnaturalearth": {
+	"id": "github/ropensci/rnaturalearth",
+	"title": "github/ropensci/rnaturalearth",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rnaturalearth",
+	"content": "an R package to hold and facilitate interaction with natural earth map data :earth_africa:"
 	},
-	"github/ropensci/rperseus": {
-	"id": "github/ropensci/rperseus",
-	"title": "github/ropensci/rperseus",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rperseus",
-	"content": "Get texts from the Perseus Digital Library :hocho: :snake: :snake: :snake:"
+	"github/ropensci/historydata": {
+	"id": "github/ropensci/historydata",
+	"title": "github/ropensci/historydata",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/historydata",
+	"content": "Datasets for Historians"
 	},
-	"github/ropensci/spocc": {
-	"id": "github/ropensci/spocc",
-	"title": "github/ropensci/spocc",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/spocc",
-	"content": "Species occurrence data toolkit for R"
+	"github/ropensci/paleobioDB": {
+	"id": "github/ropensci/paleobioDB",
+	"title": "github/ropensci/paleobioDB",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/paleobioDB",
+	"content": "R interface to the Paleobiology Database"
 	},
-	"github/ropensci/rdatacite": {
-	"id": "github/ropensci/rdatacite",
-	"title": "github/ropensci/rdatacite",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rdatacite",
-	"content": "Wrapper to DataCite metadata"
+	"github/ropensci/rnoaa": {
+	"id": "github/ropensci/rnoaa",
+	"title": "github/ropensci/rnoaa",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rnoaa",
+	"content": "R interface to many NOAA data APIs"
 	},
-	"github/ropensci/emld": {
-	"id": "github/ropensci/emld",
-	"title": "github/ropensci/emld",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/emld",
-	"content": ":package: JSON-LD representation of EML"
+	"github/ropensci/vcr": {
+	"id": "github/ropensci/vcr",
+	"title": "github/ropensci/vcr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/vcr",
+	"content": "Record HTTP calls and replay them"
 	},
-	"github/ropensci/chlorpromazineR": {
-	"id": "github/ropensci/chlorpromazineR",
-	"title": "github/ropensci/chlorpromazineR",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/chlorpromazineR",
-	"content": "Calculate chlorpromazine-equivalent doses in R"
+	"github/ropensci/infx": {
+	"id": "github/ropensci/infx",
+	"title": "github/ropensci/infx",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/infx",
+	"content": "Access to InfectX/TargetInfectX screening data from R"
+	},
+	"github/ropensci/pathviewr": {
+	"id": "github/ropensci/pathviewr",
+	"title": "github/ropensci/pathviewr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/pathviewr",
+	"content": "🐦 Tools to import, clean, and visualize animal movement data in R"
 	},
 	"github/ropensci/grainchanger": {
 	"id": "github/ropensci/grainchanger",
@@ -11277,17 +10593,41 @@
 	"url": " https://rseng.github.io/software/repository/github/ropensci/grainchanger",
 	"content": "Data aggregation methods for raster data"
 	},
-	"github/ropensci/Rclean": {
-	"id": "github/ropensci/Rclean",
-	"title": "github/ropensci/Rclean",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/Rclean",
-	"content": "Isolate essential code to re-produce specific results."
+	"github/ropensci/tidync": {
+	"id": "github/ropensci/tidync",
+	"title": "github/ropensci/tidync",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/tidync",
+	"content": "NetCDF exploration and data extraction"
 	},
-	"github/ropensci/MODISTools": {
-	"id": "github/ropensci/MODISTools",
-	"title": "github/ropensci/MODISTools",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/MODISTools",
-	"content": "Interface to the MODIS Land Products Subsets Web Services"
+	"github/ropensci/spatsoc": {
+	"id": "github/ropensci/spatsoc",
+	"title": "github/ropensci/spatsoc",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/spatsoc",
+	"content": ":package: spatsoc is an R package for detecting spatial and temporal groups in GPS relocations. "
+	},
+	"github/ropensci/onekp": {
+	"id": "github/ropensci/onekp",
+	"title": "github/ropensci/onekp",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/onekp",
+	"content": "Access sequences from the 1000 Plant Initiative (1KP)"
+	},
+	"github/ropensci/plater": {
+	"id": "github/ropensci/plater",
+	"title": "github/ropensci/plater",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/plater",
+	"content": "Tools to make it easy to work with microtiter plate-shaped data"
+	},
+	"github/ropensci/rfisheries": {
+	"id": "github/ropensci/rfisheries",
+	"title": "github/ropensci/rfisheries",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rfisheries",
+	"content": "package for interacting with fisheries databases at openfisheries.org"
+	},
+	"github/ropensci/namext": {
+	"id": "github/ropensci/namext",
+	"title": "github/ropensci/namext",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/namext",
+	"content": "extract scientific names from papers/articles/text using gnfinder (https://github.com/gnames/gnfinder)"
 	},
 	"github/ropensci/workloopR": {
 	"id": "github/ropensci/workloopR",
@@ -11295,35 +10635,35 @@
 	"url": " https://rseng.github.io/software/repository/github/ropensci/workloopR",
 	"content": "💪 Analysis of work loops and other data from muscle physiology experiments"
 	},
-	"github/ropensci/camsRad": {
-	"id": "github/ropensci/camsRad",
-	"title": "github/ropensci/camsRad",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/camsRad",
-	"content": "R Client for CAMS Radiation Service"
+	"github/ropensci/solrium": {
+	"id": "github/ropensci/solrium",
+	"title": "github/ropensci/solrium",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/solrium",
+	"content": "A general purpose R interface to Solr"
 	},
-	"github/ropensci/rzmq": {
-	"id": "github/ropensci/rzmq",
-	"title": "github/ropensci/rzmq",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rzmq",
-	"content": "R package for ZMQ"
+	"github/ropensci/emld": {
+	"id": "github/ropensci/emld",
+	"title": "github/ropensci/emld",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/emld",
+	"content": ":package: JSON-LD representation of EML"
 	},
-	"github/ropensci/osfr": {
-	"id": "github/ropensci/osfr",
-	"title": "github/ropensci/osfr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/osfr",
-	"content": "R interface to the Open Science Framework (OSF)"
+	"github/ropensci/rOPTRAM": {
+	"id": "github/ropensci/rOPTRAM",
+	"title": "github/ropensci/rOPTRAM",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rOPTRAM",
+	"content": "Derive Soil Moisture Using the OPTRAM Algorithm"
 	},
-	"github/ropensci/rbhl": {
-	"id": "github/ropensci/rbhl",
-	"title": "github/ropensci/rbhl",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rbhl",
-	"content": "R interface to the Biodiversity Heritage Library (BHL) API"
+	"github/ropensci/jqr": {
+	"id": "github/ropensci/jqr",
+	"title": "github/ropensci/jqr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/jqr",
+	"content": "R interface to jq "
 	},
-	"github/ropensci/rcol": {
-	"id": "github/ropensci/rcol",
-	"title": "github/ropensci/rcol",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rcol",
-	"content": "client for Catalogue of Life REST API"
+	"github/ropensci/pdftools": {
+	"id": "github/ropensci/pdftools",
+	"title": "github/ropensci/pdftools",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/pdftools",
+	"content": "Text Extraction, Rendering and Converting of PDF Documents"
 	},
 	"github/ropensci/jenkins": {
 	"id": "github/ropensci/jenkins",
@@ -11331,125 +10671,149 @@
 	"url": " https://rseng.github.io/software/repository/github/ropensci/jenkins",
 	"content": "Simple Jenkins client for R"
 	},
-	"github/ropensci/mregions": {
-	"id": "github/ropensci/mregions",
-	"title": "github/ropensci/mregions",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/mregions",
-	"content": "MarineRegions R client"
+	"github/ropensci/hunspell": {
+	"id": "github/ropensci/hunspell",
+	"title": "github/ropensci/hunspell",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/hunspell",
+	"content": "High-Performance Stemmer, Tokenizer, and Spell Checker for R"
 	},
-	"github/ropensci/outcomerate": {
-	"id": "github/ropensci/outcomerate",
-	"title": "github/ropensci/outcomerate",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/outcomerate",
-	"content": "AAPOR Survey Outcome Rates"
+	"github/ropensci/terrainr": {
+	"id": "github/ropensci/terrainr",
+	"title": "github/ropensci/terrainr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/terrainr",
+	"content": "Get DEMs and orthoimagery from the USGS National Map, georeference your images and merge rasters, and visualize with Unity 3D"
 	},
-	"github/ropensci/crul": {
-	"id": "github/ropensci/crul",
-	"title": "github/ropensci/crul",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/crul",
-	"content": "R6 based http client for R (made for developers)"
+	"github/ropensci/av": {
+	"id": "github/ropensci/av",
+	"title": "github/ropensci/av",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/av",
+	"content": "Working with Video in R"
 	},
-	"github/ropensci/vcr": {
-	"id": "github/ropensci/vcr",
-	"title": "github/ropensci/vcr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/vcr",
-	"content": "Record HTTP calls and replay them"
+	"github/ropensci/ots": {
+	"id": "github/ropensci/ots",
+	"title": "github/ropensci/ots",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/ots",
+	"content": "ocean time series datasets"
 	},
-	"github/ropensci/europepmc": {
-	"id": "github/ropensci/europepmc",
-	"title": "github/ropensci/europepmc",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/europepmc",
-	"content": "R Interface to Europe PMC RESTful Web Service"
+	"github/ropensci/mctq": {
+	"id": "github/ropensci/mctq",
+	"title": "github/ropensci/mctq",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/mctq",
+	"content": "☀ Tools to process the Munich ChronoType Questionnaire (MCTQ)"
 	},
-	"github/ropensci/internetarchive": {
-	"id": "github/ropensci/internetarchive",
-	"title": "github/ropensci/internetarchive",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/internetarchive",
-	"content": "Search the Internet Archive, retrieve metadata, and download files"
+	"github/ropensci/rebird": {
+	"id": "github/ropensci/rebird",
+	"title": "github/ropensci/rebird",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rebird",
+	"content": "Wrapper to the eBird API"
 	},
-	"github/ropensci/rerddap": {
-	"id": "github/ropensci/rerddap",
-	"title": "github/ropensci/rerddap",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rerddap",
-	"content": "R client for working with ERDDAP servers"
+	"github/ropensci/chromer": {
+	"id": "github/ropensci/chromer",
+	"title": "github/ropensci/chromer",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/chromer",
+	"content": "package for interacting with the chromosome counts database (CCDB) at http://ccdb.tau.ac.il"
 	},
-	"github/ropensci/spatsoc": {
-	"id": "github/ropensci/spatsoc",
-	"title": "github/ropensci/spatsoc",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/spatsoc",
-	"content": ":package: spatsoc is an R package for detecting spatial and temporal groups in GPS relocations. "
+	"github/ropensci/rusda": {
+	"id": "github/ropensci/rusda",
+	"title": "github/ropensci/rusda",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rusda",
+	"content": "Interface to USDA Databases"
 	},
-	"github/ropensci/randgeo": {
-	"id": "github/ropensci/randgeo",
-	"title": "github/ropensci/randgeo",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/randgeo",
-	"content": "random WKT or GeoJSON"
+	"github/ropensci/geojsonlint": {
+	"id": "github/ropensci/geojsonlint",
+	"title": "github/ropensci/geojsonlint",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/geojsonlint",
+	"content": "GeoJSON linting for R (THIS IS NOT THE SRC FOR geojsonlint.com)"
 	},
-	"github/ropensci/webchem": {
-	"id": "github/ropensci/webchem",
-	"title": "github/ropensci/webchem",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/webchem",
-	"content": "Chemical Information from the Web"
+	"github/ropensci/rrlite": {
+	"id": "github/ropensci/rrlite",
+	"title": "github/ropensci/rrlite",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rrlite",
+	"content": "R interface to rlite https://github.com/seppo0010/rlite"
 	},
-	"github/ropensci/readODS": {
-	"id": "github/ropensci/readODS",
-	"title": "github/ropensci/readODS",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/readODS",
-	"content": "read ODS files into R as data.frames"
+	"github/ropensci/bowerbird": {
+	"id": "github/ropensci/bowerbird",
+	"title": "github/ropensci/bowerbird",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/bowerbird",
+	"content": "Keep a collection of sparkly data resources"
 	},
-	"github/ropensci/hunspell": {
-	"id": "github/ropensci/hunspell",
-	"title": "github/ropensci/hunspell",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/hunspell",
-	"content": "High-Performance Stemmer, Tokenizer, and Spell Checker for R"
+	"github/ropensci/PostcodesioR": {
+	"id": "github/ropensci/PostcodesioR",
+	"title": "github/ropensci/PostcodesioR",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/PostcodesioR",
+	"content": "API wrapper around postcodes.io - free UK postcode lookup and geocoder"
 	},
-	"github/ropensci/solrium": {
-	"id": "github/ropensci/solrium",
-	"title": "github/ropensci/solrium",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/solrium",
-	"content": "A general purpose R interface to Solr"
+	"github/ropensci/RefManageR": {
+	"id": "github/ropensci/RefManageR",
+	"title": "github/ropensci/RefManageR",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/RefManageR",
+	"content": "R package RefManageR"
 	},
-	"github/ropensci/katex": {
-	"id": "github/ropensci/katex",
-	"title": "github/ropensci/katex",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/katex",
-	"content": "Server side math to html rendering in R"
+	"github/ropensci/RNeXML": {
+	"id": "github/ropensci/RNeXML",
+	"title": "github/ropensci/RNeXML",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/RNeXML",
+	"content": "Implementing semantically rich NeXML I/O in R"
 	},
-	"github/ropensci/dataaimsr": {
-	"id": "github/ropensci/dataaimsr",
-	"title": "github/ropensci/dataaimsr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/dataaimsr",
-	"content": "Australian Institute of Marine Science (AIMS) Data Platform API Client which provides easy access to AIMS Data Platform scientific data and information."
+	"github/ropensci/rvertnet": {
+	"id": "github/ropensci/rvertnet",
+	"title": "github/ropensci/rvertnet",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rvertnet",
+	"content": "Wrapper to the VertNet API"
 	},
-	"github/ropensci/rcites": {
-	"id": "github/ropensci/rcites",
-	"title": "github/ropensci/rcites",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rcites",
-	"content": ":package: R package to access the CITES Speciesplus database "
+	"github/ropensci/ramlegacy": {
+	"id": "github/ropensci/ramlegacy",
+	"title": "github/ropensci/ramlegacy",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/ramlegacy",
+	"content": "R :package: to download, cache and read in different versions of the RAM Legacy Stock Assessment Data Base, an online compilation of stock assessment results for commercially exploited marine populations from around the world."
 	},
-	"github/ropensci/outsider": {
-	"id": "github/ropensci/outsider",
-	"title": "github/ropensci/outsider",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/outsider",
-	"content": ":black_square_button::registered: Install and run programs, outside of R, inside of R"
+	"github/ropensci/ssh": {
+	"id": "github/ropensci/ssh",
+	"title": "github/ropensci/ssh",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/ssh",
+	"content": "Native SSH client in R based on libssh"
 	},
-	"github/ropensci/dittodb": {
-	"id": "github/ropensci/dittodb",
-	"title": "github/ropensci/dittodb",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/dittodb",
-	"content": "dittodb: A Test Environment for DB Queries in R"
+	"github/ropensci/jsonvalidate": {
+	"id": "github/ropensci/jsonvalidate",
+	"title": "github/ropensci/jsonvalidate",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/jsonvalidate",
+	"content": ":heavy_check_mark::interrobang: Validate JSON"
 	},
-	"github/ropensci/googleLanguageR": {
-	"id": "github/ropensci/googleLanguageR",
-	"title": "github/ropensci/googleLanguageR",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/googleLanguageR",
-	"content": "R client for the Google Translation API, Google Cloud Natural Language API and Google Cloud Speech API"
+	"github/ropensci/bibtex": {
+	"id": "github/ropensci/bibtex",
+	"title": "github/ropensci/bibtex",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/bibtex",
+	"content": "bibtex parser for R"
 	},
-	"github/ropensci/taxa": {
-	"id": "github/ropensci/taxa",
-	"title": "github/ropensci/taxa",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/taxa",
-	"content": "taxonomic classes for R"
+	"github/ropensci/c14bazAAR": {
+	"id": "github/ropensci/c14bazAAR",
+	"title": "github/ropensci/c14bazAAR",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/c14bazAAR",
+	"content": "R Package - Download and Prepare C14 Dates from Different Source Databases"
+	},
+	"github/ropensci/lingtypology": {
+	"id": "github/ropensci/lingtypology",
+	"title": "github/ropensci/lingtypology",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/lingtypology",
+	"content": "R package for linguistic cartography and typological databases search"
+	},
+	"github/ropensci/rcoreoa": {
+	"id": "github/ropensci/rcoreoa",
+	"title": "github/ropensci/rcoreoa",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rcoreoa",
+	"content": "CORE API R Client"
+	},
+	"github/ropensci/citesdb": {
+	"id": "github/ropensci/citesdb",
+	"title": "github/ropensci/citesdb",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/citesdb",
+	"content": "A high-performance database of shipment-level CITES trade data"
+	},
+	"github/ropensci/refsplitr": {
+	"id": "github/ropensci/refsplitr",
+	"title": "github/ropensci/refsplitr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/refsplitr",
+	"content": "R package for processing, organizing, and visualizing reference records downloaded from the Web of Science. "
 	},
 	"github/ropensci/FedData": {
 	"id": "github/ropensci/FedData",
@@ -11457,29 +10821,29 @@
 	"url": " https://rseng.github.io/software/repository/github/ropensci/FedData",
 	"content": "Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources"
 	},
-	"github/ropensci/rdefra": {
-	"id": "github/ropensci/rdefra",
-	"title": "github/ropensci/rdefra",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rdefra",
-	"content": "rdefra: Interact with the UK AIR Pollution Database from DEFRA"
-	},
-	"github/ropensci/rAltmetric": {
-	"id": "github/ropensci/rAltmetric",
-	"title": "github/ropensci/rAltmetric",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rAltmetric",
-	"content": "Query and visualize metrics from altmetric.com"
+	"github/ropensci/rtweet": {
+	"id": "github/ropensci/rtweet",
+	"title": "github/ropensci/rtweet",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rtweet",
+	"content": "🐦 R client for interacting with Twitter&#39;s [stream and REST] APIs"
 	},
-	"github/ropensci/phylogram": {
-	"id": "github/ropensci/phylogram",
-	"title": "github/ropensci/phylogram",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/phylogram",
-	"content": "Dendrograms for Evolutionary Analysis"
+	"github/ropensci/graphql": {
+	"id": "github/ropensci/graphql",
+	"title": "github/ropensci/graphql",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/graphql",
+	"content": "Bindings to libgraphqlparser for R"
 	},
-	"github/ropensci/riem": {
-	"id": "github/ropensci/riem",
-	"title": "github/ropensci/riem",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/riem",
-	"content": ":airplane: :sunny: R package for accessing ASOS data via the Iowa Environment Mesonet :cloud: :airplane:"
+	"github/ropensci/charlatan": {
+	"id": "github/ropensci/charlatan",
+	"title": "github/ropensci/charlatan",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/charlatan",
+	"content": "Create fake data in R"
+	},
+	"github/ropensci/addressable": {
+	"id": "github/ropensci/addressable",
+	"title": "github/ropensci/addressable",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/addressable",
+	"content": "Email Address Validation"
 	},
 	"github/ropensci/oai": {
 	"id": "github/ropensci/oai",
@@ -11487,11 +10851,59 @@
 	"url": " https://rseng.github.io/software/repository/github/ropensci/oai",
 	"content": "OAI-PMH R client"
 	},
-	"github/ropensci/bomrang": {
-	"id": "github/ropensci/bomrang",
-	"title": "github/ropensci/bomrang",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/bomrang",
-	"content": "Australian government Bureau of Meteorology (BOM) data client for R"
+	"github/ropensci/ecoengine": {
+	"id": "github/ropensci/ecoengine",
+	"title": "github/ropensci/ecoengine",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/ecoengine",
+	"content": "Programmatic interface to the Berkeley Ecoinformatics Engine "
+	},
+	"github/ropensci/pangaear": {
+	"id": "github/ropensci/pangaear",
+	"title": "github/ropensci/pangaear",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/pangaear",
+	"content": "R client for the Pangaea database"
+	},
+	"github/ropensci/rotl": {
+	"id": "github/ropensci/rotl",
+	"title": "github/ropensci/rotl",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rotl",
+	"content": "Interface to Open Tree of Life API"
+	},
+	"github/ropensci/rromeo": {
+	"id": "github/ropensci/rromeo",
+	"title": "github/ropensci/rromeo",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rromeo",
+	"content": ":package: An R client for SHERPA/RoMEO API"
+	},
+	"github/ropensci/rcol": {
+	"id": "github/ropensci/rcol",
+	"title": "github/ropensci/rcol",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rcol",
+	"content": "client for Catalogue of Life REST API"
+	},
+	"github/ropensci/SymbiotaR2": {
+	"id": "github/ropensci/SymbiotaR2",
+	"title": "github/ropensci/SymbiotaR2",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/SymbiotaR2",
+	"content": "SymbiotaR2: an R package for accessing and downloading from Symbiota2 portals"
+	},
+	"github/ropensci/webchem": {
+	"id": "github/ropensci/webchem",
+	"title": "github/ropensci/webchem",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/webchem",
+	"content": "Chemical Information from the Web"
+	},
+	"github/ropensci/daiquiri": {
+	"id": "github/ropensci/daiquiri",
+	"title": "github/ropensci/daiquiri",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/daiquiri",
+	"content": "Data quality reporting for temporal datasets."
+	},
+	"github/ropensci/fingertipsR": {
+	"id": "github/ropensci/fingertipsR",
+	"title": "github/ropensci/fingertipsR",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/fingertipsR",
+	"content": "R package to interact with Public Health England’s Fingertips data tool"
 	},
 	"github/ropensci/nlrx": {
 	"id": "github/ropensci/nlrx",
@@ -11499,11 +10911,29 @@
 	"url": " https://rseng.github.io/software/repository/github/ropensci/nlrx",
 	"content": "nlrx NetLogo R"
 	},
-	"github/ropensci/pangaear": {
-	"id": "github/ropensci/pangaear",
-	"title": "github/ropensci/pangaear",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/pangaear",
-	"content": "R client for the Pangaea database"
+	"github/ropensci/jagstargets": {
+	"id": "github/ropensci/jagstargets",
+	"title": "github/ropensci/jagstargets",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/jagstargets",
+	"content": "Reproducible Bayesian data analysis pipelines with targets and JAGS"
+	},
+	"github/ropensci/qpdf": {
+	"id": "github/ropensci/qpdf",
+	"title": "github/ropensci/qpdf",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/qpdf",
+	"content": "Split, Combine and Compress PDF files"
+	},
+	"github/ropensci/prism": {
+	"id": "github/ropensci/prism",
+	"title": "github/ropensci/prism",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/prism",
+	"content": "Download data from the Oregon PRISM climate data project http://www.prism.oregonstate.edu/"
+	},
+	"github/ropensci/rplos": {
+	"id": "github/ropensci/rplos",
+	"title": "github/ropensci/rplos",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rplos",
+	"content": "R client for the PLoS Journals API"
 	},
 	"github/ropensci/targets": {
 	"id": "github/ropensci/targets",
@@ -11511,143 +10941,155 @@
 	"url": " https://rseng.github.io/software/repository/github/ropensci/targets",
 	"content": "Function-oriented Make-like declarative workflows for R"
 	},
-	"github/ropensci/citesdb": {
-	"id": "github/ropensci/citesdb",
-	"title": "github/ropensci/citesdb",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/citesdb",
-	"content": "A high-performance database of shipment-level CITES trade data"
+	"github/ropensci/rnassqs": {
+	"id": "github/ropensci/rnassqs",
+	"title": "github/ropensci/rnassqs",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rnassqs",
+	"content": "R interface for the USDA National Agricultural Statistical Service&#39;s (NASS) &#39;Quick Stats&#39; API (https://quickstats.nass.usda.gov/api)"
 	},
-	"github/ropensci/rtika": {
-	"id": "github/ropensci/rtika",
-	"title": "github/ropensci/rtika",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rtika",
-	"content": "R Interface to Apache Tika"
+	"github/ropensci/nasapower": {
+	"id": "github/ropensci/nasapower",
+	"title": "github/ropensci/nasapower",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/nasapower",
+	"content": "API Client for NASA POWER Global Meteorology, Surface Solar Energy and Climatology in R"
 	},
-	"github/ropensci/DataPackageR": {
-	"id": "github/ropensci/DataPackageR",
-	"title": "github/ropensci/DataPackageR",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/DataPackageR",
-	"content": "An R package to enable reproducible data processing, packaging and sharing."
+	"github/ropensci/MtreeRing": {
+	"id": "github/ropensci/MtreeRing",
+	"title": "github/ropensci/MtreeRing",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/MtreeRing",
+	"content": " A tool for measuring tree-ring width"
 	},
-	"github/ropensci/isdparser": {
-	"id": "github/ropensci/isdparser",
-	"title": "github/ropensci/isdparser",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/isdparser",
-	"content": "NOAA ISD/ISH file parser"
+	"github/ropensci/ritis": {
+	"id": "github/ropensci/ritis",
+	"title": "github/ropensci/ritis",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/ritis",
+	"content": "Integrated Taxonomic Information Service (ITIS) R client"
 	},
-	"github/ropensci/dbhydroR": {
-	"id": "github/ropensci/dbhydroR",
-	"title": "github/ropensci/dbhydroR",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/dbhydroR",
-	"content": "R interface to the South Florida Water Management District&#39;s DBHYDRO Database :sweat_drops::palm_tree:"
+	"github/ropensci/rperseus": {
+	"id": "github/ropensci/rperseus",
+	"title": "github/ropensci/rperseus",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rperseus",
+	"content": "Get texts from the Perseus Digital Library :hocho: :snake: :snake: :snake:"
 	},
-	"github/ropensci/osmdata": {
-	"id": "github/ropensci/osmdata",
-	"title": "github/ropensci/osmdata",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/osmdata",
-	"content": "R package for downloading OpenStreetMap data"
+	"github/ropensci/microdemic": {
+	"id": "github/ropensci/microdemic",
+	"title": "github/ropensci/microdemic",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/microdemic",
+	"content": "microsoft academic client"
 	},
-	"github/ropensci/rorcid": {
-	"id": "github/ropensci/rorcid",
-	"title": "github/ropensci/rorcid",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rorcid",
-	"content": "A programmatic interface the Orcid.org API"
+	"github/ropensci/taxadb": {
+	"id": "github/ropensci/taxadb",
+	"title": "github/ropensci/taxadb",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/taxadb",
+	"content": ":package: Taxonomic Database"
 	},
-	"github/ropensci/tradestatistics": {
-	"id": "github/ropensci/tradestatistics",
-	"title": "github/ropensci/tradestatistics",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/tradestatistics",
-	"content": "R package to access Open Trade Statistics API"
+	"github/ropensci/DataSpaceR": {
+	"id": "github/ropensci/DataSpaceR",
+	"title": "github/ropensci/DataSpaceR",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/DataSpaceR",
+	"content": "R Interface to the CAVD DataSpace"
 	},
-	"github/ropensci/webmockr": {
-	"id": "github/ropensci/webmockr",
-	"title": "github/ropensci/webmockr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/webmockr",
-	"content": "R library for stubbing and setting expectations on HTTP requests"
+	"github/ropensci/magick": {
+	"id": "github/ropensci/magick",
+	"title": "github/ropensci/magick",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/magick",
+	"content": "Magic, madness, heaven, sin"
 	},
-	"github/ropensci/namext": {
-	"id": "github/ropensci/namext",
-	"title": "github/ropensci/namext",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/namext",
-	"content": "extract scientific names from papers/articles/text using gnfinder (https://github.com/gnames/gnfinder)"
+	"github/ropensci/MODISTools": {
+	"id": "github/ropensci/MODISTools",
+	"title": "github/ropensci/MODISTools",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/MODISTools",
+	"content": "Interface to the MODIS Land Products Subsets Web Services"
 	},
-	"github/ropensci/assertr": {
-	"id": "github/ropensci/assertr",
-	"title": "github/ropensci/assertr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/assertr",
-	"content": "Assertive programming for R analysis pipelines"
+	"github/ropensci/GSODR": {
+	"id": "github/ropensci/GSODR",
+	"title": "github/ropensci/GSODR",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/GSODR",
+	"content": "API Client for Global Surface Summary of the Day (&#39;GSOD&#39;) Weather Data Client in R"
 	},
-	"github/ropensci/iheatmapr": {
-	"id": "github/ropensci/iheatmapr",
-	"title": "github/ropensci/iheatmapr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/iheatmapr",
-	"content": "Complex, interactive heatmaps in R"
+	"github/ropensci/dataspice": {
+	"id": "github/ropensci/dataspice",
+	"title": "github/ropensci/dataspice",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/dataspice",
+	"content": ":hot_pepper: Create lightweight schema.org descriptions of your datasets"
 	},
-	"github/ropensci/taxview": {
-	"id": "github/ropensci/taxview",
-	"title": "github/ropensci/taxview",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/taxview",
-	"content": "Summarise and visualize data sets wrt taxonomy"
+	"github/ropensci/biomartr": {
+	"id": "github/ropensci/biomartr",
+	"title": "github/ropensci/biomartr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/biomartr",
+	"content": "Genomic Data Retrieval with R"
 	},
-	"github/ropensci/rfigshare": {
-	"id": "github/ropensci/rfigshare",
-	"title": "github/ropensci/rfigshare",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rfigshare",
-	"content": "Programmatic interface for Figshare"
+	"github/ropensci/fulltext": {
+	"id": "github/ropensci/fulltext",
+	"title": "github/ropensci/fulltext",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/fulltext",
+	"content": "Search across and get full text for OA &amp; closed journals"
 	},
-	"github/ropensci/rrricanesdata": {
-	"id": "github/ropensci/rrricanesdata",
-	"title": "github/ropensci/rrricanesdata",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rrricanesdata",
-	"content": "Supporting dataset for R package rrricanes"
+	"github/ropensci/arkdb": {
+	"id": "github/ropensci/arkdb",
+	"title": "github/ropensci/arkdb",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/arkdb",
+	"content": "Archive and unarchive databases as flat text files"
 	},
-	"github/ropensci/taxizedb": {
-	"id": "github/ropensci/taxizedb",
-	"title": "github/ropensci/taxizedb",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/taxizedb",
-	"content": "Tools for Working with Taxonomic SQL Databases"
+	"github/ropensci/rredlist": {
+	"id": "github/ropensci/rredlist",
+	"title": "github/ropensci/rredlist",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rredlist",
+	"content": "IUCN Red List API Client"
 	},
-	"github/ropensci/rgbif": {
-	"id": "github/ropensci/rgbif",
-	"title": "github/ropensci/rgbif",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rgbif",
-	"content": "Interface to the Global Biodiversity Information Facility API"
+	"github/ropensci/camsRad": {
+	"id": "github/ropensci/camsRad",
+	"title": "github/ropensci/camsRad",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/camsRad",
+	"content": "R Client for CAMS Radiation Service"
 	},
-	"github/ropensci/wateRinfo": {
-	"id": "github/ropensci/wateRinfo",
-	"title": "github/ropensci/wateRinfo",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/wateRinfo",
-	"content": "R package to download time series data from waterinfo.be"
+	"github/ropensci/rbace": {
+	"id": "github/ropensci/rbace",
+	"title": "github/ropensci/rbace",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rbace",
+	"content": "BASE R client"
 	},
-	"github/ropensci/opencage": {
-	"id": "github/ropensci/opencage",
-	"title": "github/ropensci/opencage",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/opencage",
-	"content": ":globe_with_meridians: R package for the OpenCage API -- both forward and reverse geocoding :globe_with_meridians:"
+	"github/ropensci/hoardr": {
+	"id": "github/ropensci/hoardr",
+	"title": "github/ropensci/hoardr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/hoardr",
+	"content": "manage cached files"
 	},
-	"github/ropensci/rromeo": {
-	"id": "github/ropensci/rromeo",
-	"title": "github/ropensci/rromeo",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rromeo",
-	"content": ":package: An R client for SHERPA/RoMEO API"
+	"github/ropensci/nbaR": {
+	"id": "github/ropensci/nbaR",
+	"title": "github/ropensci/nbaR",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/nbaR",
+	"content": "R client library for the Netherlands Biodiversity Api (NBA)"
 	},
-	"github/ropensci/suppdata": {
-	"id": "github/ropensci/suppdata",
-	"title": "github/ropensci/suppdata",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/suppdata",
-	"content": "Grabbing SUPPlementary DATA in R"
+	"github/ropensci/rentrez": {
+	"id": "github/ropensci/rentrez",
+	"title": "github/ropensci/rentrez",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rentrez",
+	"content": "talk with NCBI entrez using R"
 	},
-	"github/ropensci/GSODR": {
-	"id": "github/ropensci/GSODR",
-	"title": "github/ropensci/GSODR",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/GSODR",
-	"content": "API Client for Global Surface Summary of the Day (&#39;GSOD&#39;) Weather Data Client in R"
+	"github/ropensci/wellknown": {
+	"id": "github/ropensci/wellknown",
+	"title": "github/ropensci/wellknown",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/wellknown",
+	"content": "WKT &lt;-&gt; GeoJSON"
 	},
-	"github/ropensci/phylotaR": {
-	"id": "github/ropensci/phylotaR",
-	"title": "github/ropensci/phylotaR",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/phylotaR",
-	"content": "An automated pipeline for retrieving orthologous DNA sequences from GenBank in R"
+	"github/ropensci/osmextract": {
+	"id": "github/ropensci/osmextract",
+	"title": "github/ropensci/osmextract",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/osmextract",
+	"content": "Download and import OpenStreetMap data from Geofabrik and other providers"
+	},
+	"github/ropensci/git2r": {
+	"id": "github/ropensci/git2r",
+	"title": "github/ropensci/git2r",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/git2r",
+	"content": "R bindings to the libgit2 library"
+	},
+	"github/ropensci/comtradr": {
+	"id": "github/ropensci/comtradr",
+	"title": "github/ropensci/comtradr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/comtradr",
+	"content": "Functions for Interacting with the UN Comtrade API"
 	},
 	"github/ropensci/exoplanets": {
 	"id": "github/ropensci/exoplanets",
@@ -11655,23 +11097,77 @@
 	"url": " https://rseng.github.io/software/repository/github/ropensci/exoplanets",
 	"content": ":earth_americas: Provides access to NASA&#39;s Exoplanet Archive"
 	},
-	"github/ropensci/spelling": {
-	"id": "github/ropensci/spelling",
-	"title": "github/ropensci/spelling",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/spelling",
-	"content": "Tools for Spell Checking in R"
+	"github/ropensci/restez": {
+	"id": "github/ropensci/restez",
+	"title": "github/ropensci/restez",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/restez",
+	"content": ":sleeping: :open_file_folder: Create and Query a Local Copy of GenBank in R"
 	},
-	"github/ropensci/rglobi": {
-	"id": "github/ropensci/rglobi",
-	"title": "github/ropensci/rglobi",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rglobi",
-	"content": "R library to access species interaction data of http://globalbioticinteractions.org"
+	"github/ropensci/pendulum": {
+	"id": "github/ropensci/pendulum",
+	"title": "github/ropensci/pendulum",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/pendulum",
+	"content": "a date/time replacement pkg for R to facilitate time hacking"
 	},
-	"github/ropensci/rredlist": {
-	"id": "github/ropensci/rredlist",
-	"title": "github/ropensci/rredlist",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/rredlist",
-	"content": "IUCN Red List API Client"
+	"github/ropensci/rnaturalearthdata": {
+	"id": "github/ropensci/rnaturalearthdata",
+	"title": "github/ropensci/rnaturalearthdata",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rnaturalearthdata",
+	"content": "to hold data used by rnaturalearth"
+	},
+	"github/ropensci/osmdata": {
+	"id": "github/ropensci/osmdata",
+	"title": "github/ropensci/osmdata",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/osmdata",
+	"content": "R package for downloading OpenStreetMap data"
+	},
+	"github/ropensci/textreuse": {
+	"id": "github/ropensci/textreuse",
+	"title": "github/ropensci/textreuse",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/textreuse",
+	"content": "Detect text reuse and document similarity"
+	},
+	"github/ropensci/datapack": {
+	"id": "github/ropensci/datapack",
+	"title": "github/ropensci/datapack",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/datapack",
+	"content": "An R package to handle data packages"
+	},
+	"github/ropensci/DoOR.functions": {
+	"id": "github/ropensci/DoOR.functions",
+	"title": "github/ropensci/DoOR.functions",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/DoOR.functions",
+	"content": "R package containing the functions used to build the Database of Odor Responses"
+	},
+	"github/ropensci/bikedata": {
+	"id": "github/ropensci/bikedata",
+	"title": "github/ropensci/bikedata",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/bikedata",
+	"content": ":bike: Extract data from public hire bicycle systems"
+	},
+	"github/ropensci/randgeo": {
+	"id": "github/ropensci/randgeo",
+	"title": "github/ropensci/randgeo",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/randgeo",
+	"content": "random WKT or GeoJSON"
+	},
+	"github/ropensci/mapr": {
+	"id": "github/ropensci/mapr",
+	"title": "github/ropensci/mapr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/mapr",
+	"content": "Map species occurrence data"
+	},
+	"github/ropensci/suppdata": {
+	"id": "github/ropensci/suppdata",
+	"title": "github/ropensci/suppdata",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/suppdata",
+	"content": "Grabbing SUPPlementary DATA in R"
+	},
+	"github/ropensci/osmplotr": {
+	"id": "github/ropensci/osmplotr",
+	"title": "github/ropensci/osmplotr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/osmplotr",
+	"content": "Data visualisation using OpenStreetMap objects"
 	},
 	"github/ropensci/parzer": {
 	"id": "github/ropensci/parzer",
@@ -11679,833 +11175,905 @@
 	"url": " https://rseng.github.io/software/repository/github/ropensci/parzer",
 	"content": "Parse geographic coordinates"
 	},
-	"github/ropensci/allodb": {
-	"id": "github/ropensci/allodb",
-	"title": "github/ropensci/allodb",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/allodb",
-	"content": "An R package for biomass estimation at extratropical forest plots."
+	"github/ropensci/photosearcher": {
+	"id": "github/ropensci/photosearcher",
+	"title": "github/ropensci/photosearcher",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/photosearcher",
+	"content": "Searches Flickr for photographs and metadata "
 	},
-	"github/ropensci/tinkr": {
-	"id": "github/ropensci/tinkr",
-	"title": "github/ropensci/tinkr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci/tinkr",
-	"content": "Convert (R)Markdown files to XML, edit them, write them back as (R)Markdown"
+	"github/ropensci/cld2": {
+	"id": "github/ropensci/cld2",
+	"title": "github/ropensci/cld2",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/cld2",
+	"content": "R Wrapper for Google&#39;s Compact Language Detector 2"
+	},
+	"github/ropensci/cld3": {
+	"id": "github/ropensci/cld3",
+	"title": "github/ropensci/cld3",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/cld3",
+	"content": "Bindings to Google&#39;s Compact Language Detector 3 "
+	},
+	"github/ropensci/bib2df": {
+	"id": "github/ropensci/bib2df",
+	"title": "github/ropensci/bib2df",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/bib2df",
+	"content": "Parse a BibTeX file to a tibble"
+	},
+	"github/ropensci/tidypmc": {
+	"id": "github/ropensci/tidypmc",
+	"title": "github/ropensci/tidypmc",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/tidypmc",
+	"content": "Parse full text XML documents from Pubmed Central"
+	},
+	"github/ropensci/rAltmetric": {
+	"id": "github/ropensci/rAltmetric",
+	"title": "github/ropensci/rAltmetric",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rAltmetric",
+	"content": "Query and visualize metrics from altmetric.com"
+	},
+	"github/ropensci/rdflib": {
+	"id": "github/ropensci/rdflib",
+	"title": "github/ropensci/rdflib",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rdflib",
+	"content": ":package: High level wrapper around the redland package for common rdf applications "
+	},
+	"github/ropensci/popler": {
+	"id": "github/ropensci/popler",
+	"title": "github/ropensci/popler",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/popler",
+	"content": "The R package to browse and query the popler database"
+	},
+	"github/ropensci/riem": {
+	"id": "github/ropensci/riem",
+	"title": "github/ropensci/riem",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/riem",
+	"content": ":airplane: :sunny: R package for accessing ASOS data via the Iowa Environment Mesonet :cloud: :airplane:"
+	},
+	"github/ropensci/rerddap": {
+	"id": "github/ropensci/rerddap",
+	"title": "github/ropensci/rerddap",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rerddap",
+	"content": "R client for working with ERDDAP servers"
+	},
+	"github/ropensci/osfr": {
+	"id": "github/ropensci/osfr",
+	"title": "github/ropensci/osfr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/osfr",
+	"content": "R interface to the Open Science Framework (OSF)"
+	},
+	"github/ropensci/hddtools": {
+	"id": "github/ropensci/hddtools",
+	"title": "github/ropensci/hddtools",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/hddtools",
+	"content": "Hydrological Data Discovery Tools (R package for hydrology and open data)"
+	},
+	"github/ropensci/refimpact": {
+	"id": "github/ropensci/refimpact",
+	"title": "github/ropensci/refimpact",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/refimpact",
+	"content": "API wrapper for UK Research Excellence Framework 2014 Impact Case Studies Database"
 	},
-	"github/RECeSS-EU-Project/stanscofi": {
-	"id": "github/RECeSS-EU-Project/stanscofi",
-	"title": "github/RECeSS-EU-Project/stanscofi",
-	"url": " https://rseng.github.io/software/repository/github/RECeSS-EU-Project/stanscofi",
-	"content": "Package for STANdard drug Screening by COllaborative FIltering. Performs benchmarks against datasets and SotA algorithms, and implements training, validation and testing procedures."
+	"github/ropensci/USAboundariesData": {
+	"id": "github/ropensci/USAboundariesData",
+	"title": "github/ropensci/USAboundariesData",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/USAboundariesData",
+	"content": "Datasets for the &#39;USAboundaries&#39; package"
 	},
-	"github/astronomical-data-processing/RAPP": {
-	"id": "github/astronomical-data-processing/RAPP",
-	"title": "github/astronomical-data-processing/RAPP",
-	"url": " https://rseng.github.io/software/repository/github/astronomical-data-processing/RAPP",
-	"content": "None"
+	"github/ropensci/mregions": {
+	"id": "github/ropensci/mregions",
+	"title": "github/ropensci/mregions",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/mregions",
+	"content": "MarineRegions R client"
 	},
-	"github/leesulab/arcMS": {
-	"id": "github/leesulab/arcMS",
-	"title": "github/leesulab/arcMS",
-	"url": " https://rseng.github.io/software/repository/github/leesulab/arcMS",
-	"content": "Mass spectrometry data converter from UNIFI to Parquet and HDF5 formats"
+	"github/ropensci/excluder": {
+	"id": "github/ropensci/excluder",
+	"title": "github/ropensci/excluder",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/excluder",
+	"content": "Checks for Exclusion Criteria in Online Data"
 	},
-	"github/egstrom/cluster-in-a-box": {
-	"id": "github/egstrom/cluster-in-a-box",
-	"title": "github/egstrom/cluster-in-a-box",
-	"url": " https://rseng.github.io/software/repository/github/egstrom/cluster-in-a-box",
-	"content": "Statistical model of protostellar clusters"
+	"github/ropensci/landscapetools": {
+	"id": "github/ropensci/landscapetools",
+	"title": "github/ropensci/landscapetools",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/landscapetools",
+	"content": "📦 R package for some of the less-glamorous tasks involved in landscape analysis 🌏"
 	},
-	"github/jupyter/notebook": {
-	"id": "github/jupyter/notebook",
-	"title": "github/jupyter/notebook",
-	"url": " https://rseng.github.io/software/repository/github/jupyter/notebook",
-	"content": "Jupyter Interactive Notebook"
+	"github/ropensci/phonfieldwork": {
+	"id": "github/ropensci/phonfieldwork",
+	"title": "github/ropensci/phonfieldwork",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/phonfieldwork",
+	"content": "R package for phonetic research and experimenting"
 	},
-	"github/nespinoza/mc-spam": {
-	"id": "github/nespinoza/mc-spam",
-	"title": "github/nespinoza/mc-spam",
-	"url": " https://rseng.github.io/software/repository/github/nespinoza/mc-spam",
-	"content": "MC-SPAM is an algorithm to generate limb-darkening coefficients from models that are comparable to transit photometry according to the formalism described in Espinoza &amp; Jordan (2015)"
+	"github/ropensci/mauricer": {
+	"id": "github/ropensci/mauricer",
+	"title": "github/ropensci/mauricer",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/mauricer",
+	"content": "Install BEAST2 packages from R"
 	},
-	"github/nespinoza/limb-darkening": {
-	"id": "github/nespinoza/limb-darkening",
-	"title": "github/nespinoza/limb-darkening",
-	"url": " https://rseng.github.io/software/repository/github/nespinoza/limb-darkening",
-	"content": "Codes to generate limb-darkening coefficients using arbitrary response functions as explained in Espinoza &amp; Jordan (2015)"
+	"github/ropensci/phylogram": {
+	"id": "github/ropensci/phylogram",
+	"title": "github/ropensci/phylogram",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/phylogram",
+	"content": "Dendrograms for Evolutionary Analysis"
 	},
-	"github/nespinoza/juliet": {
-	"id": "github/nespinoza/juliet",
-	"title": "github/nespinoza/juliet",
-	"url": " https://rseng.github.io/software/repository/github/nespinoza/juliet",
-	"content": "A versatile modelling tool for transiting and non-transiting (single and multiple) exoplanetary systems"
+	"github/ropensci/outsider.devtools": {
+	"id": "github/ropensci/outsider.devtools",
+	"title": "github/ropensci/outsider.devtools",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/outsider.devtools",
+	"content": "Build your own modules for `outsider`"
 	},
-	"github/nespinoza/ld-exosim": {
-	"id": "github/nespinoza/ld-exosim",
-	"title": "github/nespinoza/ld-exosim",
-	"url": " https://rseng.github.io/software/repository/github/nespinoza/ld-exosim",
-	"content": "Code to simulate biases introduced by using different limb-darkening laws as explained in Espinoza &amp; Jordán (2016)"
+	"github/ropensci/RSelenium": {
+	"id": "github/ropensci/RSelenium",
+	"title": "github/ropensci/RSelenium",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/RSelenium",
+	"content": "An R client for Selenium Remote WebDriver"
 	},
-	"github/nespinoza/exonailer": {
-	"id": "github/nespinoza/exonailer",
-	"title": "github/nespinoza/exonailer",
-	"url": " https://rseng.github.io/software/repository/github/nespinoza/exonailer",
-	"content": "Tools for fitting transiting exoplanet lightcurves and radial velocities"
+	"github/ropensci/DataPackageR": {
+	"id": "github/ropensci/DataPackageR",
+	"title": "github/ropensci/DataPackageR",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/DataPackageR",
+	"content": "An R package to enable reproducible data processing, packaging and sharing."
 	},
-	"github/quantum-exeter/SpiDy.jl": {
-	"id": "github/quantum-exeter/SpiDy.jl",
-	"title": "github/quantum-exeter/SpiDy.jl",
-	"url": " https://rseng.github.io/software/repository/github/quantum-exeter/SpiDy.jl",
-	"content": ":spider: Non-Markovian stochastic SPIn (and harmonic oscillator) DYnamics. "
+	"github/ropensci/gitignore": {
+	"id": "github/ropensci/gitignore",
+	"title": "github/ropensci/gitignore",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/gitignore",
+	"content": "A R interface to fetch gitignore templates form gitignore.io"
 	},
-	"github/dianna-ai/dianna": {
-	"id": "github/dianna-ai/dianna",
-	"title": "github/dianna-ai/dianna",
-	"url": " https://rseng.github.io/software/repository/github/dianna-ai/dianna",
-	"content": "Deep Insight And Neural Network Analysis"
+	"github/ropensci/iheatmapr": {
+	"id": "github/ropensci/iheatmapr",
+	"title": "github/ropensci/iheatmapr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/iheatmapr",
+	"content": "Complex, interactive heatmaps in R"
 	},
-	"github/barnesgroupICL/Driftfusion": {
-	"id": "github/barnesgroupICL/Driftfusion",
-	"title": "github/barnesgroupICL/Driftfusion",
-	"url": " https://rseng.github.io/software/repository/github/barnesgroupICL/Driftfusion",
-	"content": "An open source drift diffusion code based in MATLAB for simulating solar cells"
+	"github/ropensci/neotoma": {
+	"id": "github/ropensci/neotoma",
+	"title": "github/ropensci/neotoma",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/neotoma",
+	"content": "Programmatic R interface to the Neotoma Paleoecological Database."
 	},
-	"github/barentsen/k2flix": {
-	"id": "github/barentsen/k2flix",
-	"title": "github/barentsen/k2flix",
-	"url": " https://rseng.github.io/software/repository/github/barentsen/k2flix",
-	"content": "Create beautiful quicklook movies from the pixel data observed by NASA&#39;s Kepler/K2/TESS spacecraft."
+	"github/ropensci/EML": {
+	"id": "github/ropensci/EML",
+	"title": "github/ropensci/EML",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/EML",
+	"content": " Ecological Metadata Language interface for R: synthesis and integration of heterogenous data"
 	},
-	"github/barentsen/dave": {
-	"id": "github/barentsen/dave",
-	"title": "github/barentsen/dave",
-	"url": " https://rseng.github.io/software/repository/github/barentsen/dave",
-	"content": "Discovery And Vetting of K2 Exoplanets"
+	"github/ropensci/gtfsr": {
+	"id": "github/ropensci/gtfsr",
+	"title": "github/ropensci/gtfsr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/gtfsr",
+	"content": "Package for obtaining, validating, viewing, and storing GTFS (transit) data"
 	},
-	"github/amkozlov/raxml-ng": {
-	"id": "github/amkozlov/raxml-ng",
-	"title": "github/amkozlov/raxml-ng",
-	"url": " https://rseng.github.io/software/repository/github/amkozlov/raxml-ng",
-	"content": "RAxML Next Generation: faster, easier-to-use and more flexible"
+	"github/ropensci/AntWeb": {
+	"id": "github/ropensci/AntWeb",
+	"title": "github/ropensci/AntWeb",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/AntWeb",
+	"content": "An R wrapper for the AntWeb API"
 	},
-	"github/JesusTorrado/extrapops": {
-	"id": "github/JesusTorrado/extrapops",
-	"title": "github/JesusTorrado/extrapops",
-	"url": " https://rseng.github.io/software/repository/github/JesusTorrado/extrapops",
-	"content": "extrapops: fast simulation and analysis of extra-galactic binary GW sources"
+	"github/ropensci/stantargets": {
+	"id": "github/ropensci/stantargets",
+	"title": "github/ropensci/stantargets",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/stantargets",
+	"content": "Reproducible Bayesian data analysis pipelines with targets and cmdstanr"
 	},
-	"github/sbi-dev/sbi": {
-	"id": "github/sbi-dev/sbi",
-	"title": "github/sbi-dev/sbi",
-	"url": " https://rseng.github.io/software/repository/github/sbi-dev/sbi",
-	"content": "Simulation-based inference toolkit"
+	"github/ropensci/stats19": {
+	"id": "github/ropensci/stats19",
+	"title": "github/ropensci/stats19",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/stats19",
+	"content": "R package for working with open road traffic casualty data from Great Britain"
 	},
-	"github/dparks1134/RefineM": {
-	"id": "github/dparks1134/RefineM",
-	"title": "github/dparks1134/RefineM",
-	"url": " https://rseng.github.io/software/repository/github/dparks1134/RefineM",
-	"content": "A toolbox for improving metagenome-assembled genomes."
+	"github/ropensci/ezknitr": {
+	"id": "github/ropensci/ezknitr",
+	"title": "github/ropensci/ezknitr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/ezknitr",
+	"content": "Avoid the typical working directory pain when using &#39;knitr&#39;"
 	},
-	"github/mlr-org/mcboost": {
-	"id": "github/mlr-org/mcboost",
-	"title": "github/mlr-org/mcboost",
-	"url": " https://rseng.github.io/software/repository/github/mlr-org/mcboost",
-	"content": "Multi-Calibration &amp; Multi-Accuracy Boosting for R"
+	"github/ropensci/nomisr": {
+	"id": "github/ropensci/nomisr",
+	"title": "github/ropensci/nomisr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/nomisr",
+	"content": "Access UK official statistics from the Nomis database through R."
 	},
-	"github/nlesc-ave/ave-rest-service": {
-	"id": "github/nlesc-ave/ave-rest-service",
-	"title": "github/nlesc-ave/ave-rest-service",
-	"url": " https://rseng.github.io/software/repository/github/nlesc-ave/ave-rest-service",
-	"content": "visualize (clustered) single-nucleotide variants across genomes"
+	"github/ropensci/predictNMB": {
+	"id": "github/ropensci/predictNMB",
+	"title": "github/ropensci/predictNMB",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/predictNMB",
+	"content": "None"
 	},
-	"github/martibosch/detectree": {
-	"id": "github/martibosch/detectree",
-	"title": "github/martibosch/detectree",
-	"url": " https://rseng.github.io/software/repository/github/martibosch/detectree",
-	"content": "Tree detection from aerial imagery in Python"
+	"github/ropensci/MODIStsp": {
+	"id": "github/ropensci/MODIStsp",
+	"title": "github/ropensci/MODIStsp",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/MODIStsp",
+	"content": "An &#34;R&#34; package for automatic download and preprocessing of MODIS Land Products Time Series"
 	},
-	"github/pavanvidem/chira": {
-	"id": "github/pavanvidem/chira",
-	"title": "github/pavanvidem/chira",
-	"url": " https://rseng.github.io/software/repository/github/pavanvidem/chira",
-	"content": "Chimeric Read Annotator"
+	"github/ropensci/treedata.table": {
+	"id": "github/ropensci/treedata.table",
+	"title": "github/ropensci/treedata.table",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/treedata.table",
+	"content": "A wrapper for data.table that enables fast manipulation of  phylogenetic trees matched to data."
 	},
-	"github/tornede/py_experimenter": {
-	"id": "github/tornede/py_experimenter",
-	"title": "github/tornede/py_experimenter",
-	"url": " https://rseng.github.io/software/repository/github/tornede/py_experimenter",
-	"content": "The PyExperimenter is a tool for the automatic execution of experiments, e.g. for machine learning (ML), capturing corresponding results in a unified manner in a database. "
+	"github/ropensci/scrubr": {
+	"id": "github/ropensci/scrubr",
+	"title": "github/ropensci/scrubr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/scrubr",
+	"content": "Clean species occurrence records"
 	},
-	"github/iancze/PSOAP": {
-	"id": "github/iancze/PSOAP",
-	"title": "github/iancze/PSOAP",
-	"url": " https://rseng.github.io/software/repository/github/iancze/PSOAP",
-	"content": "Tools for data-driven spectra models with Gaussian processes. Pronounced &#34;soap.&#34;"
+	"github/ropensci/tokenizers": {
+	"id": "github/ropensci/tokenizers",
+	"title": "github/ropensci/tokenizers",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/tokenizers",
+	"content": "Fast, Consistent Tokenization of Natural Language Text"
 	},
-	"github/iancze/DiskJockey": {
-	"id": "github/iancze/DiskJockey",
-	"title": "github/iancze/DiskJockey",
-	"url": " https://rseng.github.io/software/repository/github/iancze/DiskJockey",
-	"content": "Protoplanetary Disk Modeling for Dynamical Mass Derivation"
+	"github/ropensci/binman": {
+	"id": "github/ropensci/binman",
+	"title": "github/ropensci/binman",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/binman",
+	"content": "A Binary Download Manager"
 	},
-	"github/Sudaraka88/LDWeaver": {
-	"id": "github/Sudaraka88/LDWeaver",
-	"title": "github/Sudaraka88/LDWeaver",
-	"url": " https://rseng.github.io/software/repository/github/Sudaraka88/LDWeaver",
-	"content": "Genomewide Epistasis Analysis on Bacteria"
+	"github/ropensci/clifro": {
+	"id": "github/ropensci/clifro",
+	"title": "github/ropensci/clifro",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/clifro",
+	"content": "Easily download and visualise climate data from CliFlo"
 	},
-	"github/sambit-giri/BCMemu": {
-	"id": "github/sambit-giri/BCMemu",
-	"title": "github/sambit-giri/BCMemu",
-	"url": " https://rseng.github.io/software/repository/github/sambit-giri/BCMemu",
-	"content": "None"
+	"github/ropensci/eia": {
+	"id": "github/ropensci/eia",
+	"title": "github/ropensci/eia",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/eia",
+	"content": "An R package wrapping the US Energy Information Administration open data API."
 	},
-	"github/sambit-giri/BCemu": {
-	"id": "github/sambit-giri/BCemu",
-	"title": "github/sambit-giri/BCemu",
-	"url": " https://rseng.github.io/software/repository/github/sambit-giri/BCemu",
-	"content": "None"
+	"github/ropensci/wdman": {
+	"id": "github/ropensci/wdman",
+	"title": "github/ropensci/wdman",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/wdman",
+	"content": "Webdriver/Selenium Binary Manager"
 	},
-	"github/sambit-giri/tools21cm": {
-	"id": "github/sambit-giri/tools21cm",
-	"title": "github/sambit-giri/tools21cm",
-	"url": " https://rseng.github.io/software/repository/github/sambit-giri/tools21cm",
-	"content": "None"
+	"github/ropensci/citecorp": {
+	"id": "github/ropensci/citecorp",
+	"title": "github/ropensci/citecorp",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/citecorp",
+	"content": "Client for the Open Citations Corpus"
 	},
-	"github/erikbern/ann-benchmarks": {
-	"id": "github/erikbern/ann-benchmarks",
-	"title": "github/erikbern/ann-benchmarks",
-	"url": " https://rseng.github.io/software/repository/github/erikbern/ann-benchmarks",
-	"content": "Benchmarks of approximate nearest neighbor libraries in Python"
+	"github/ropensci/rtika": {
+	"id": "github/ropensci/rtika",
+	"title": "github/ropensci/rtika",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rtika",
+	"content": "R Interface to Apache Tika"
 	},
-	"github/hpc4cmb/toast": {
-	"id": "github/hpc4cmb/toast",
-	"title": "github/hpc4cmb/toast",
-	"url": " https://rseng.github.io/software/repository/github/hpc4cmb/toast",
-	"content": "Time Ordered Astrophysics Scalable Tools"
+	"github/ropensci/rAvis": {
+	"id": "github/ropensci/rAvis",
+	"title": "github/ropensci/rAvis",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rAvis",
+	"content": "rAvis: an R-package to download the information stored in “proyectoavis”, a citizen science bird project. "
 	},
-	"github/danielemelini/ALMA3": {
-	"id": "github/danielemelini/ALMA3",
-	"title": "github/danielemelini/ALMA3",
-	"url": " https://rseng.github.io/software/repository/github/danielemelini/ALMA3",
-	"content": "the plAnetary Love nuMbers cAlculator"
+	"github/ropensci/plotly": {
+	"id": "github/ropensci/plotly",
+	"title": "github/ropensci/plotly",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/plotly",
+	"content": "An interactive graphing library for R"
 	},
-	"github/fraserw/TRIPPy": {
-	"id": "github/fraserw/TRIPPy",
-	"title": "github/fraserw/TRIPPy",
-	"url": " https://rseng.github.io/software/repository/github/fraserw/TRIPPy",
-	"content": "Python based Trailed Source Photometry"
+	"github/ropensci/fauxpas": {
+	"id": "github/ropensci/fauxpas",
+	"title": "github/ropensci/fauxpas",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/fauxpas",
+	"content": "fauxpas does http errors"
 	},
-	"github/pnsaevik/effluent": {
-	"id": "github/pnsaevik/effluent",
-	"title": "github/pnsaevik/effluent",
-	"url": " https://rseng.github.io/software/repository/github/pnsaevik/effluent",
-	"content": "None"
+	"github/ropensci/spiro": {
+	"id": "github/ropensci/spiro",
+	"title": "github/ropensci/spiro",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/spiro",
+	"content": "Work with data from cardiopulmonary exercise testing"
 	},
-	"github/nlesc-nano/swan": {
-	"id": "github/nlesc-nano/swan",
-	"title": "github/nlesc-nano/swan",
-	"url": " https://rseng.github.io/software/repository/github/nlesc-nano/swan",
-	"content": "Screening Workflows And statistical models to predict new materials"
+	"github/ropensci/osmapiR": {
+	"id": "github/ropensci/osmapiR",
+	"title": "github/ropensci/osmapiR",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/osmapiR",
+	"content": "An R interface to OpenStreetMap API for fetching and saving data from/to the OpenStreetMap database"
 	},
-	"github/nlesc-nano/CAT": {
-	"id": "github/nlesc-nano/CAT",
-	"title": "github/nlesc-nano/CAT",
-	"url": " https://rseng.github.io/software/repository/github/nlesc-nano/CAT",
-	"content": "A collection of tools designed for the automatic construction, and subsequent analysis, of chemical compounds."
+	"github/ropensci/tradestatistics": {
+	"id": "github/ropensci/tradestatistics",
+	"title": "github/ropensci/tradestatistics",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/tradestatistics",
+	"content": "R package to access Open Trade Statistics API"
 	},
-	"github/nlesc-nano/ceiba-cli": {
-	"id": "github/nlesc-nano/ceiba-cli",
-	"title": "github/nlesc-nano/ceiba-cli",
-	"url": " https://rseng.github.io/software/repository/github/nlesc-nano/ceiba-cli",
-	"content": "command-line interface to compute and molecular properties from a database"
+	"github/ropensci/ruODK": {
+	"id": "github/ropensci/ruODK",
+	"title": "github/ropensci/ruODK",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/ruODK",
+	"content": "ruODK: An R Client for the ODK Central API"
 	},
-	"github/nlesc-nano/ceiba": {
-	"id": "github/nlesc-nano/ceiba",
-	"title": "github/nlesc-nano/ceiba",
-	"url": " https://rseng.github.io/software/repository/github/nlesc-nano/ceiba",
-	"content": "Web service to manage scientific simulation data"
+	"github/ropensci/wikitaxa": {
+	"id": "github/ropensci/wikitaxa",
+	"title": "github/ropensci/wikitaxa",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/wikitaxa",
+	"content": "taxonomy data from Wikipedia/Wikidata/Wikispecies"
 	},
-	"github/nlesc-nano/insilico-server": {
-	"id": "github/nlesc-nano/insilico-server",
-	"title": "github/nlesc-nano/insilico-server",
-	"url": " https://rseng.github.io/software/repository/github/nlesc-nano/insilico-server",
-	"content": "web server to handle the properties"
+	"github/ropensci/censo2017": {
+	"id": "github/ropensci/censo2017",
+	"title": "github/ropensci/censo2017",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/censo2017",
+	"content": "Una Base de Datos de Alto Rendimiento del Censo 2017 de Chile."
 	},
-	"github/nlesc-nano/Moka": {
-	"id": "github/nlesc-nano/Moka",
-	"title": "github/nlesc-nano/Moka",
-	"url": " https://rseng.github.io/software/repository/github/nlesc-nano/Moka",
-	"content": "command line interface to compute and molecular properties from a database"
+	"github/ropensci/trufflesniffer": {
+	"id": "github/ropensci/trufflesniffer",
+	"title": "github/ropensci/trufflesniffer",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/trufflesniffer",
+	"content": "snif out truffles (secrets) [passwords, tokens, api keys]"
 	},
-	"github/nlesc-nano/flamingo": {
-	"id": "github/nlesc-nano/flamingo",
-	"title": "github/nlesc-nano/flamingo",
-	"url": " https://rseng.github.io/software/repository/github/nlesc-nano/flamingo",
-	"content": "Computation and filtering of molecular properties"
+	"github/ropensci/rrricanes": {
+	"id": "github/ropensci/rrricanes",
+	"title": "github/ropensci/rrricanes",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rrricanes",
+	"content": "Web scraper for Atlantic and east Pacific hurricanes and tropical storms"
 	},
-	"github/labsquare/CutePeaks": {
-	"id": "github/labsquare/CutePeaks",
-	"title": "github/labsquare/CutePeaks",
-	"url": " https://rseng.github.io/software/repository/github/labsquare/CutePeaks",
-	"content": "CutePeaks is a standalone Sanger trace viewer steered by a modern and user-friendly UI."
+	"github/ropensci/geonames": {
+	"id": "github/ropensci/geonames",
+	"title": "github/ropensci/geonames",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/geonames",
+	"content": "R package for accessing the geonames.org API"
 	},
-	"github/aqlaboratory/openfold": {
-	"id": "github/aqlaboratory/openfold",
-	"title": "github/aqlaboratory/openfold",
-	"url": " https://rseng.github.io/software/repository/github/aqlaboratory/openfold",
-	"content": "Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2"
+	"github/ropensci/tidyhydat": {
+	"id": "github/ropensci/tidyhydat",
+	"title": "github/ropensci/tidyhydat",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/tidyhydat",
+	"content": "An R package to import Water Survey of Canada hydrometric data and make it tidy"
 	},
-	"github/stammler/dustpylib": {
-	"id": "github/stammler/dustpylib",
-	"title": "github/stammler/dustpylib",
-	"url": " https://rseng.github.io/software/repository/github/stammler/dustpylib",
-	"content": "Library with auxiliary modules for DustPy"
+	"github/ropensci/opencontext": {
+	"id": "github/ropensci/opencontext",
+	"title": "github/ropensci/opencontext",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/opencontext",
+	"content": "API Client for the Open Context Archeological Database"
 	},
-	"github/stammler/simframe": {
-	"id": "github/stammler/simframe",
-	"title": "github/stammler/simframe",
-	"url": " https://rseng.github.io/software/repository/github/stammler/simframe",
-	"content": "Python framework for setting up and running scientific simulations. It comes with a variety of integration schemes and some infrastructure of reading and writing data files."
+	"github/ropensci/robotstxt": {
+	"id": "github/ropensci/robotstxt",
+	"title": "github/ropensci/robotstxt",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/robotstxt",
+	"content": "robots.txt file parsing and checking for R"
 	},
-	"github/stammler/dustpy": {
-	"id": "github/stammler/dustpy",
-	"title": "github/stammler/dustpy",
-	"url": " https://rseng.github.io/software/repository/github/stammler/dustpy",
-	"content": "Python package for the simulation of dust evolution in protoplanetary disks."
+	"github/ropensci/patentsview": {
+	"id": "github/ropensci/patentsview",
+	"title": "github/ropensci/patentsview",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/patentsview",
+	"content": "An R client to the PatentsView API"
 	},
-	"github/SciML/DataInterpolations.jl": {
-	"id": "github/SciML/DataInterpolations.jl",
-	"title": "github/SciML/DataInterpolations.jl",
-	"url": " https://rseng.github.io/software/repository/github/SciML/DataInterpolations.jl",
-	"content": "A library of data interpolation and smoothing functions"
+	"github/ropensci/treebase": {
+	"id": "github/ropensci/treebase",
+	"title": "github/ropensci/treebase",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/treebase",
+	"content": "An R interface to the treeBASE API (now on CRAN)"
 	},
-	"github/SciML/GlobalSensitivity.jl": {
-	"id": "github/SciML/GlobalSensitivity.jl",
-	"title": "github/SciML/GlobalSensitivity.jl",
-	"url": " https://rseng.github.io/software/repository/github/SciML/GlobalSensitivity.jl",
-	"content": "None"
+	"github/ropensci/qualtRics": {
+	"id": "github/ropensci/qualtRics",
+	"title": "github/ropensci/qualtRics",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/qualtRics",
+	"content": "Download ⬇️ Qualtrics survey data directly into R!"
 	},
-	"github/ucberkeleyseti/turbo_seti": {
-	"id": "github/ucberkeleyseti/turbo_seti",
-	"title": "github/ucberkeleyseti/turbo_seti",
-	"url": " https://rseng.github.io/software/repository/github/ucberkeleyseti/turbo_seti",
-	"content": "turboSETI  -- python based SETI search algorithm."
+	"github/ropensci/drake": {
+	"id": "github/ropensci/drake",
+	"title": "github/ropensci/drake",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/drake",
+	"content": "An R-focused pipeline toolkit for reproducibility and high-performance computing"
 	},
-	"github/ucberkeleyseti/blimpy": {
-	"id": "github/ucberkeleyseti/blimpy",
-	"title": "github/ucberkeleyseti/blimpy",
-	"url": " https://rseng.github.io/software/repository/github/ucberkeleyseti/blimpy",
-	"content": "Breakthrough Listen I/O Methods for Python"
+	"github/ropensci/rgpdd": {
+	"id": "github/ropensci/rgpdd",
+	"title": "github/ropensci/rgpdd",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/rgpdd",
+	"content": "Interface to the Global Population Dynamics Database, http://www3.imperial.ac.uk/cpb/databases/gpdd"
 	},
-	"github/swagnercarena/paltas": {
-	"id": "github/swagnercarena/paltas",
-	"title": "github/swagnercarena/paltas",
-	"url": " https://rseng.github.io/software/repository/github/swagnercarena/paltas",
-	"content": "Conduct simulation-based inference on strong gravitational lensing systems."
+	"github/ropensci/beautier": {
+	"id": "github/ropensci/beautier",
+	"title": "github/ropensci/beautier",
+	"url": " https://rseng.github.io/software/repository/github/ropensci/beautier",
+	"content": "R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2"
 	},
-	"github/swagnercarena/ovejero": {
-	"id": "github/swagnercarena/ovejero",
-	"title": "github/swagnercarena/ovejero",
-	"url": " https://rseng.github.io/software/repository/github/swagnercarena/ovejero",
-	"content": "Conducts hierarchical inference of strongly-lensed systems with Bayesian neural networks"
+	"github/Sarc-Graph/sarcgraph": {
+	"id": "github/Sarc-Graph/sarcgraph",
+	"title": "github/Sarc-Graph/sarcgraph",
+	"url": " https://rseng.github.io/software/repository/github/Sarc-Graph/sarcgraph",
+	"content": "None"
 	},
-	"github/adbar/htmldate": {
-	"id": "github/adbar/htmldate",
-	"title": "github/adbar/htmldate",
-	"url": " https://rseng.github.io/software/repository/github/adbar/htmldate",
-	"content": "Fast and robust date extraction from web pages, from the command-line or within Python"
+	"github/Cloud-Drift/clouddrift": {
+	"id": "github/Cloud-Drift/clouddrift",
+	"title": "github/Cloud-Drift/clouddrift",
+	"url": " https://rseng.github.io/software/repository/github/Cloud-Drift/clouddrift",
+	"content": "CloudDrift accelerates the use of Lagrangian data for atmospheric, oceanic, and climate sciences."
 	},
-	"github/rahulshah1397/LADDER": {
-	"id": "github/rahulshah1397/LADDER",
-	"title": "github/rahulshah1397/LADDER",
-	"url": " https://rseng.github.io/software/repository/github/rahulshah1397/LADDER",
-	"content": "Public release of LADDER (https://doi.org/10.3847/1538-4365/ad5558) [arXiv: 2401.17029]"
+	"github/D-Crake/HEADSS": {
+	"id": "github/D-Crake/HEADSS",
+	"title": "github/D-Crake/HEADSS",
+	"url": " https://rseng.github.io/software/repository/github/D-Crake/HEADSS",
+	"content": "HiErArchical Data Splitting and Stitching Software for Non-Distributed Clustering Algorithms"
 	},
-	"github/temuller/hostphot": {
-	"id": "github/temuller/hostphot",
-	"title": "github/temuller/hostphot",
-	"url": " https://rseng.github.io/software/repository/github/temuller/hostphot",
-	"content": "HostPhot: global and local photometry of galaxies hosting supernovae or other transients"
+	"github/bradkav/verne": {
+	"id": "github/bradkav/verne",
+	"title": "github/bradkav/verne",
+	"url": " https://rseng.github.io/software/repository/github/bradkav/verne",
+	"content": "Python code for calculating the Earth-stopping effect for super-heavy Dark Matter (DM)."
 	},
-	"github/temuller/piscola": {
-	"id": "github/temuller/piscola",
-	"title": "github/temuller/piscola",
-	"url": " https://rseng.github.io/software/repository/github/temuller/piscola",
-	"content": "Supernova light-curve fitting code"
+	"github/bradkav/BlackHolesDarkDress": {
+	"id": "github/bradkav/BlackHolesDarkDress",
+	"title": "github/bradkav/BlackHolesDarkDress",
+	"url": " https://rseng.github.io/software/repository/github/bradkav/BlackHolesDarkDress",
+	"content": "Code for studying primordial black hole (PBH) binaries, clothed in dark matter (DM) halos, associated with the paper &#34;Black Holes&#39; Dark Dress: On the merger rate of a subdominant population of primordial black holes&#34;."
 	},
-	"github/BioinfoUNIBA/REDItools2": {
-	"id": "github/BioinfoUNIBA/REDItools2",
-	"title": "github/BioinfoUNIBA/REDItools2",
-	"url": " https://rseng.github.io/software/repository/github/BioinfoUNIBA/REDItools2",
-	"content": "None"
+	"github/bradkav/NbodyIMRI": {
+	"id": "github/bradkav/NbodyIMRI",
+	"title": "github/bradkav/NbodyIMRI",
+	"url": " https://rseng.github.io/software/repository/github/bradkav/NbodyIMRI",
+	"content": "N-body solver in python, tailored to intermediate-mass ratio inspirals of black holes and dark matter spikes"
 	},
-	"github/DrafProject/elmada": {
-	"id": "github/DrafProject/elmada",
-	"title": "github/DrafProject/elmada",
-	"url": " https://rseng.github.io/software/repository/github/DrafProject/elmada",
-	"content": "elmada: Dynamic electricity carbon emission factors and prices for Europe"
+	"github/bradkav/EarthShadow": {
+	"id": "github/bradkav/EarthShadow",
+	"title": "github/bradkav/EarthShadow",
+	"url": " https://rseng.github.io/software/repository/github/bradkav/EarthShadow",
+	"content": "A tool for calculating the impact of Earth-scattering on the distribution of Dark Matter (DM) particles. Includes (Mathematica) code, numerical results, plots and animations."
 	},
-	"github/mscaudill/openseize": {
-	"id": "github/mscaudill/openseize",
-	"title": "github/mscaudill/openseize",
-	"url": " https://rseng.github.io/software/repository/github/mscaudill/openseize",
-	"content": "Digital Signal Processing for Big EEGs"
+	"github/bradkav/WIMpy_NREFT": {
+	"id": "github/bradkav/WIMpy_NREFT",
+	"title": "github/bradkav/WIMpy_NREFT",
+	"url": " https://rseng.github.io/software/repository/github/bradkav/WIMpy_NREFT",
+	"content": "WIMpy_NREFT is a code for calculating Dark Matter direct detection rates in the framework of non-relativistic effective field theory (NREFT)."
 	},
-	"github/JanCBrammer/biopeaks": {
-	"id": "github/JanCBrammer/biopeaks",
-	"title": "github/JanCBrammer/biopeaks",
-	"url": " https://rseng.github.io/software/repository/github/JanCBrammer/biopeaks",
-	"content": "biopeaks: a graphical user interface for feature extraction from heart- and breathing biosignals"
+	"github/bradkav/EarthScatterLikelihood": {
+	"id": "github/bradkav/EarthScatterLikelihood",
+	"title": "github/bradkav/EarthScatterLikelihood",
+	"url": " https://rseng.github.io/software/repository/github/bradkav/EarthScatterLikelihood",
+	"content": "Code for calculating event rates and likelihoods for Dark Matter direct detection experiments in the presence of Earth-Scattering"
 	},
-	"github/hippke/wotan": {
-	"id": "github/hippke/wotan",
-	"title": "github/hippke/wotan",
-	"url": " https://rseng.github.io/software/repository/github/hippke/wotan",
-	"content": "Automagically remove trends from time-series data"
+	"github/bradkav/DMRadon": {
+	"id": "github/bradkav/DMRadon",
+	"title": "github/bradkav/DMRadon",
+	"url": " https://rseng.github.io/software/repository/github/bradkav/DMRadon",
+	"content": "Tools for calculating the Radon Transform, for use in the analysis of Directional Dark Matter Direct Detection"
 	},
-	"github/hippke/pandora": {
-	"id": "github/hippke/pandora",
-	"title": "github/hippke/pandora",
-	"url": " https://rseng.github.io/software/repository/github/hippke/pandora",
-	"content": "A fast transit-fitting algorithm to search for transits of exomoons"
+	"github/bradkav/CEvNS": {
+	"id": "github/bradkav/CEvNS",
+	"title": "github/bradkav/CEvNS",
+	"url": " https://rseng.github.io/software/repository/github/bradkav/CEvNS",
+	"content": "Code for calculating Coherent Elastic Neutrino-Nucleus Scattering (CEvNS) cross sections and recoil spectra. Also includes code for obtaining New Physics constraints from the COHERENT-2017 results."
 	},
-	"github/hippke/PyOSE": {
-	"id": "github/hippke/PyOSE",
-	"title": "github/hippke/PyOSE",
-	"url": " https://rseng.github.io/software/repository/github/hippke/PyOSE",
-	"content": "Stacked exomoons with the Orbital Sampling Effect"
+	"github/bradkav/AntiparticleDM": {
+	"id": "github/bradkav/AntiparticleDM",
+	"title": "github/bradkav/AntiparticleDM",
+	"url": " https://rseng.github.io/software/repository/github/bradkav/AntiparticleDM",
+	"content": "Prospects for discriminating between Majorana and Dirac Dark Matter using future direct detection data. "
 	},
-	"github/hippke/tls": {
-	"id": "github/hippke/tls",
-	"title": "github/hippke/tls",
-	"url": " https://rseng.github.io/software/repository/github/hippke/tls",
-	"content": "Transit Least Squares: An optimized transit-fitting algorithm to search for periodic transits of small planets"
+	"github/bradkav/runDM": {
+	"id": "github/bradkav/runDM",
+	"title": "github/bradkav/runDM",
+	"url": " https://rseng.github.io/software/repository/github/bradkav/runDM",
+	"content": "A tool (in Mathematica and Python) for calculating the running of the couplings of Dark Matter (DM) to the Standard Model (SM) in simplified models with vector mediators."
 	},
-	"github/hippke/communication": {
-	"id": "github/hippke/communication",
-	"title": "github/hippke/communication",
-	"url": " https://rseng.github.io/software/repository/github/hippke/communication",
-	"content": "Interstellar communication"
+	"github/zpliulab/GENELink": {
+	"id": "github/zpliulab/GENELink",
+	"title": "github/zpliulab/GENELink",
+	"url": " https://rseng.github.io/software/repository/github/zpliulab/GENELink",
+	"content": "None"
 	},
-	"github/LuisGoncalves1/CLOWN": {
-	"id": "github/LuisGoncalves1/CLOWN",
-	"title": "github/LuisGoncalves1/CLOWN",
-	"url": " https://rseng.github.io/software/repository/github/LuisGoncalves1/CLOWN",
-	"content": "Cloud detection software to be applied in observatories with an all-sky camera."
+	"github/zpliulab/GeoBind": {
+	"id": "github/zpliulab/GeoBind",
+	"title": "github/zpliulab/GeoBind",
+	"url": " https://rseng.github.io/software/repository/github/zpliulab/GeoBind",
+	"content": "Segmentation of nucleic acid binding interface on protein surface with geometric deep learning"
 	},
-	"github/Libensemble/libensemble": {
-	"id": "github/Libensemble/libensemble",
-	"title": "github/Libensemble/libensemble",
-	"url": " https://rseng.github.io/software/repository/github/Libensemble/libensemble",
-	"content": "A Python toolkit for coordinating asynchronous and dynamic ensembles of calculations."
+	"github/FAIR-data-for-CAPACITY/FHIR-to-CAPACITY": {
+	"id": "github/FAIR-data-for-CAPACITY/FHIR-to-CAPACITY",
+	"title": "github/FAIR-data-for-CAPACITY/FHIR-to-CAPACITY",
+	"url": " https://rseng.github.io/software/repository/github/FAIR-data-for-CAPACITY/FHIR-to-CAPACITY",
+	"content": "None"
 	},
-	"github/CosmoStat/shapepipe": {
-	"id": "github/CosmoStat/shapepipe",
-	"title": "github/CosmoStat/shapepipe",
-	"url": " https://rseng.github.io/software/repository/github/CosmoStat/shapepipe",
-	"content": "Shape Measurement Pipeline"
+	"github/pyro-kinetics/pyrokinetics": {
+	"id": "github/pyro-kinetics/pyrokinetics",
+	"title": "github/pyro-kinetics/pyrokinetics",
+	"url": " https://rseng.github.io/software/repository/github/pyro-kinetics/pyrokinetics",
+	"content": "Python library to run and analyse gyrokinetics simulations"
 	},
-	"github/CosmoStat/mccd": {
-	"id": "github/CosmoStat/mccd",
-	"title": "github/CosmoStat/mccd",
-	"url": " https://rseng.github.io/software/repository/github/CosmoStat/mccd",
-	"content": "Multi-CCD data-driven PSF modelling"
+	"github/transientskp/tkp": {
+	"id": "github/transientskp/tkp",
+	"title": "github/transientskp/tkp",
+	"url": " https://rseng.github.io/software/repository/github/transientskp/tkp",
+	"content": "A transients-discovery pipeline for astronomical image-based surveys"
 	},
-	"github/CosmoStat/Glimpse": {
-	"id": "github/CosmoStat/Glimpse",
-	"title": "github/CosmoStat/Glimpse",
-	"url": " https://rseng.github.io/software/repository/github/CosmoStat/Glimpse",
-	"content": "Sparsity based weak lensing mass-mapping tool"
+	"github/transientskp/lpf": {
+	"id": "github/transientskp/lpf",
+	"title": "github/transientskp/lpf",
+	"url": " https://rseng.github.io/software/repository/github/transientskp/lpf",
+	"content": "None"
 	},
-	"github/CosmoStat/score": {
-	"id": "github/CosmoStat/score",
-	"title": "github/CosmoStat/score",
-	"url": " https://rseng.github.io/software/repository/github/CosmoStat/score",
-	"content": "Shape COnstraint REstoration"
+	"github/transientskp/pyse": {
+	"id": "github/transientskp/pyse",
+	"title": "github/transientskp/pyse",
+	"url": " https://rseng.github.io/software/repository/github/transientskp/pyse",
+	"content": "Python Source Extractor"
 	},
-	"github/RJArthern/WAVI.jl": {
-	"id": "github/RJArthern/WAVI.jl",
-	"title": "github/RJArthern/WAVI.jl",
-	"url": " https://rseng.github.io/software/repository/github/RJArthern/WAVI.jl",
-	"content": "WAVI ice sheet model"
+	"github/MarioRomeroC/Mixclask": {
+	"id": "github/MarioRomeroC/Mixclask",
+	"title": "github/MarioRomeroC/Mixclask",
+	"url": " https://rseng.github.io/software/repository/github/MarioRomeroC/Mixclask",
+	"content": "Mixing cloudy and skirt"
 	},
-	"github/ACCarnall/SpectRes": {
-	"id": "github/ACCarnall/SpectRes",
-	"title": "github/ACCarnall/SpectRes",
-	"url": " https://rseng.github.io/software/repository/github/ACCarnall/SpectRes",
-	"content": "SpectRes is a Python module which efficiently resamples spectra and their associated uncertainties onto an arbitrary wavelength grid. Read the documentation at"
+	"github/konradhoeffner/hdt": {
+	"id": "github/konradhoeffner/hdt",
+	"title": "github/konradhoeffner/hdt",
+	"url": " https://rseng.github.io/software/repository/github/konradhoeffner/hdt",
+	"content": "Library for the Header Dictionary Triples (HDT) compression file format for RDF data."
 	},
-	"github/ACCarnall/bagpipes": {
-	"id": "github/ACCarnall/bagpipes",
-	"title": "github/ACCarnall/bagpipes",
-	"url": " https://rseng.github.io/software/repository/github/ACCarnall/bagpipes",
-	"content": "Bagpipes is a state of the art code for generating realistic model galaxy spectra and fitting these to spectroscopic and photometric observations. Users should install with pip, not by cloning the repository."
+	"github/patscott/gambit_1.3": {
+	"id": "github/patscott/gambit_1.3",
+	"title": "github/patscott/gambit_1.3",
+	"url": " https://rseng.github.io/software/repository/github/patscott/gambit_1.3",
+	"content": "GAMBIT: The Global and Modular Beyond-the-Standard-Model Inference Tool"
 	},
-	"github/moranegg/deposit-template": {
-	"id": "github/moranegg/deposit-template",
-	"title": "github/moranegg/deposit-template",
-	"url": " https://rseng.github.io/software/repository/github/moranegg/deposit-template",
-	"content": "This is a deposit template repository to help researchers in starting their project in a online VCS"
+	"github/patscott/pippi": {
+	"id": "github/patscott/pippi",
+	"title": "github/patscott/pippi",
+	"url": " https://rseng.github.io/software/repository/github/patscott/pippi",
+	"content": "Pippi: parse it, plot it.  A program for operating on MCMC chains and related lists of samples from a function or distribution."
 	},
-	"github/moranegg/AffectationRO": {
-	"id": "github/moranegg/AffectationRO",
-	"title": "github/moranegg/AffectationRO",
-	"url": " https://rseng.github.io/software/repository/github/moranegg/AffectationRO",
-	"content": "Projet en recherche opérationelle "
+	"github/patscott/ddcalc": {
+	"id": "github/patscott/ddcalc",
+	"title": "github/patscott/ddcalc",
+	"url": " https://rseng.github.io/software/repository/github/patscott/ddcalc",
+	"content": "Dark matter direct detection phenomenology package"
 	},
-	"github/NextGenCMB/lensitbiases": {
-	"id": "github/NextGenCMB/lensitbiases",
-	"title": "github/NextGenCMB/lensitbiases",
-	"url": " https://rseng.github.io/software/repository/github/NextGenCMB/lensitbiases",
-	"content": "rfft-based flat-sky CMB lensing tools"
+	"github/adamjermyn/Skye": {
+	"id": "github/adamjermyn/Skye",
+	"title": "github/adamjermyn/Skye",
+	"url": " https://rseng.github.io/software/repository/github/adamjermyn/Skye",
+	"content": "A differentiable equation of state"
 	},
-	"github/EOSC-LOFAR/lofar-ld": {
-	"id": "github/EOSC-LOFAR/lofar-ld",
-	"title": "github/EOSC-LOFAR/lofar-ld",
-	"url": " https://rseng.github.io/software/repository/github/EOSC-LOFAR/lofar-ld",
-	"content": "LOFAR Linked Data Platform"
+	"github/ruggiero/clustep": {
+	"id": "github/ruggiero/clustep",
+	"title": "github/ruggiero/clustep",
+	"url": " https://rseng.github.io/software/repository/github/ruggiero/clustep",
+	"content": "Generates initial conditions for a galaxy cluster halo simulation in a format that can be read in GADGET2 or RAMSES."
 	},
-	"github/DingshanDeng/ysoisochrone": {
-	"id": "github/DingshanDeng/ysoisochrone",
-	"title": "github/DingshanDeng/ysoisochrone",
-	"url": " https://rseng.github.io/software/repository/github/DingshanDeng/ysoisochrone",
-	"content": "This is the Python package that handles the isochrones for young stellar objects (YSOs). One of the primary goals of this package is to derive the stellar mass and ages from the isochrones."
+	"github/ruggiero/galstep": {
+	"id": "github/ruggiero/galstep",
+	"title": "github/ruggiero/galstep",
+	"url": " https://rseng.github.io/software/repository/github/ruggiero/galstep",
+	"content": "Generates initial conditions for a spiral galaxy simulation in a format that can be read in GADGET2 or RAMSES, or alternatively in the HDF5 format."
 	},
-	"github/ToHanwei/Genome2OR": {
-	"id": "github/ToHanwei/Genome2OR",
-	"title": "github/ToHanwei/Genome2OR",
-	"url": " https://rseng.github.io/software/repository/github/ToHanwei/Genome2OR",
-	"content": "Annotate Olfactory receptor CDS from genome"
+	"github/smsharma/mining-for-substructure-lens": {
+	"id": "github/smsharma/mining-for-substructure-lens",
+	"title": "github/smsharma/mining-for-substructure-lens",
+	"url": " https://rseng.github.io/software/repository/github/smsharma/mining-for-substructure-lens",
+	"content": "Inference of substructure properties in strong lensing systems with machine learning. Code repository associated with https://arxiv.org/abs/1909.02005."
 	},
-	"github/mengyao/Complete-Striped-Smith-Waterman-Library": {
-	"id": "github/mengyao/Complete-Striped-Smith-Waterman-Library",
-	"title": "github/mengyao/Complete-Striped-Smith-Waterman-Library",
-	"url": " https://rseng.github.io/software/repository/github/mengyao/Complete-Striped-Smith-Waterman-Library",
-	"content": "Smith-Waterman aligner based on libssw"
+	"github/smsharma/dark-photons-perturbations": {
+	"id": "github/smsharma/dark-photons-perturbations",
+	"title": "github/smsharma/dark-photons-perturbations",
+	"url": " https://rseng.github.io/software/repository/github/smsharma/dark-photons-perturbations",
+	"content": "Dark photon conversions in our inhomogeneous Universe. Code repository associated with the papers https://arxiv.org/abs/2002.05165 and https://arxiv.org/abs/2004.06733."
 	},
-	"github/BrianAronson/birankr": {
-	"id": "github/BrianAronson/birankr",
-	"title": "github/BrianAronson/birankr",
-	"url": " https://rseng.github.io/software/repository/github/BrianAronson/birankr",
-	"content": "CRAN package for estimating various rank (centrality) measures of nodes in bipartite graphs (two-mode networks)."
+	"github/smsharma/fermi-gce-flows": {
+	"id": "github/smsharma/fermi-gce-flows",
+	"title": "github/smsharma/fermi-gce-flows",
+	"url": " https://rseng.github.io/software/repository/github/smsharma/fermi-gce-flows",
+	"content": "Simulation-based inference for the Galactic Center gamma-ray excess. Code repository associated with https://arxiv.org/abs/2110.06931."
 	},
-	"github/rivasiker/PhaseTypeR": {
-	"id": "github/rivasiker/PhaseTypeR",
-	"title": "github/rivasiker/PhaseTypeR",
-	"url": " https://rseng.github.io/software/repository/github/rivasiker/PhaseTypeR",
-	"content": "General-purpose phase-type functions"
+	"github/nimble-dev/nimbleHMC": {
+	"id": "github/nimble-dev/nimbleHMC",
+	"title": "github/nimble-dev/nimbleHMC",
+	"url": " https://rseng.github.io/software/repository/github/nimble-dev/nimbleHMC",
+	"content": "HMC and other derivative-based MCMC sampling algorithms for the nimble package"
 	},
-	"github/gnudatalanguage/gdl": {
-	"id": "github/gnudatalanguage/gdl",
-	"title": "github/gnudatalanguage/gdl",
-	"url": " https://rseng.github.io/software/repository/github/gnudatalanguage/gdl",
-	"content": "GDL - GNU Data Language"
+	"github/elizabethnewman/hessQuik": {
+	"id": "github/elizabethnewman/hessQuik",
+	"title": "github/elizabethnewman/hessQuik",
+	"url": " https://rseng.github.io/software/repository/github/elizabethnewman/hessQuik",
+	"content": "Computing gradients and Hessians of feed-forward networks with GPU acceleration"
 	},
-	"github/exoclam/gaspery": {
-	"id": "github/exoclam/gaspery",
-	"title": "github/exoclam/gaspery",
-	"url": " https://rseng.github.io/software/repository/github/exoclam/gaspery",
-	"content": "None"
+	"github/climate-machine/Oceananigans.jl": {
+	"id": "github/climate-machine/Oceananigans.jl",
+	"title": "github/climate-machine/Oceananigans.jl",
+	"url": " https://rseng.github.io/software/repository/github/climate-machine/Oceananigans.jl",
+	"content": "🌊 Fast and friendly fluid dynamics on CPUs and GPUs"
 	},
-	"github/obertscheiderfhwn/RTMsim": {
-	"id": "github/obertscheiderfhwn/RTMsim",
-	"title": "github/obertscheiderfhwn/RTMsim",
-	"url": " https://rseng.github.io/software/repository/github/obertscheiderfhwn/RTMsim",
-	"content": "RTMsim - A Julia module for filling simulations in Resin Transfer Moulding"
+	"github/scrook/neuroml-db": {
+	"id": "github/scrook/neuroml-db",
+	"title": "github/scrook/neuroml-db",
+	"url": " https://rseng.github.io/software/repository/github/scrook/neuroml-db",
+	"content": "database of neuroml models"
 	},
-	"github/tommyau/bamclipper": {
-	"id": "github/tommyau/bamclipper",
-	"title": "github/tommyau/bamclipper",
-	"url": " https://rseng.github.io/software/repository/github/tommyau/bamclipper",
-	"content": "Remove primer sequence from BAM alignments by soft-clipping"
+	"github/RTIP/artip": {
+	"id": "github/RTIP/artip",
+	"title": "github/RTIP/artip",
+	"url": " https://rseng.github.io/software/repository/github/RTIP/artip",
+	"content": "Automated Radio Telescope Imaging Pipeline"
 	},
-	"github/tsfloss/BFast": {
-	"id": "github/tsfloss/BFast",
-	"title": "github/tsfloss/BFast",
-	"url": " https://rseng.github.io/software/repository/github/tsfloss/BFast",
-	"content": "A fast GPU based bispectrum estimator implemented using JAX"
+	"github/PynPoint/PynPoint": {
+	"id": "github/PynPoint/PynPoint",
+	"title": "github/PynPoint/PynPoint",
+	"url": " https://rseng.github.io/software/repository/github/PynPoint/PynPoint",
+	"content": "Pipeline for processing and analysis of high-contrast imaging data"
 	},
-	"github/tsfloss/DensityFieldTools": {
-	"id": "github/tsfloss/DensityFieldTools",
-	"title": "github/tsfloss/DensityFieldTools",
-	"url": " https://rseng.github.io/software/repository/github/tsfloss/DensityFieldTools",
-	"content": "Tools for manipulating density fields and measuring power spectra and bispectra"
+	"github/xoopR/set6": {
+	"id": "github/xoopR/set6",
+	"title": "github/xoopR/set6",
+	"url": " https://rseng.github.io/software/repository/github/xoopR/set6",
+	"content": "R6 object-oriented interface for mathematical sets."
 	},
-	"github/tsfloss/URecon": {
-	"id": "github/tsfloss/URecon",
-	"title": "github/tsfloss/URecon",
-	"url": " https://rseng.github.io/software/repository/github/tsfloss/URecon",
-	"content": "U-Net Architecture to reconstruct the initial conditions of N-Body simulations"
+	"github/SuperKogito/spafe": {
+	"id": "github/SuperKogito/spafe",
+	"title": "github/SuperKogito/spafe",
+	"url": " https://rseng.github.io/software/repository/github/SuperKogito/spafe",
+	"content": ":sound: spafe: Simplified Python Audio Features Extraction"
 	},
-	"github/Bgi-LUSH/GPMeta": {
-	"id": "github/Bgi-LUSH/GPMeta",
-	"title": "github/Bgi-LUSH/GPMeta",
-	"url": " https://rseng.github.io/software/repository/github/Bgi-LUSH/GPMeta",
-	"content": "A GPU-accelerated method for ultrarapid pathogen identification from metagenomic sequences."
+	"github/bokunoBike/m6AGE": {
+	"id": "github/bokunoBike/m6AGE",
+	"title": "github/bokunoBike/m6AGE",
+	"url": " https://rseng.github.io/software/repository/github/bokunoBike/m6AGE",
+	"content": "A predictor for m6A sites."
 	},
-	"github/parallelwindfarms/byteparsing": {
-	"id": "github/parallelwindfarms/byteparsing",
-	"title": "github/parallelwindfarms/byteparsing",
-	"url": " https://rseng.github.io/software/repository/github/parallelwindfarms/byteparsing",
-	"content": "Parser for mixed binary/ASCII data in Python"
+	"github/mlysy/LocalCop": {
+	"id": "github/mlysy/LocalCop",
+	"title": "github/mlysy/LocalCop",
+	"url": " https://rseng.github.io/software/repository/github/mlysy/LocalCop",
+	"content": "Local Likelihood Inference for Conditional Copulas"
 	},
-	"github/wajidarshad/ESIDE": {
-	"id": "github/wajidarshad/ESIDE",
-	"title": "github/wajidarshad/ESIDE",
-	"url": " https://rseng.github.io/software/repository/github/wajidarshad/ESIDE",
-	"content": "Earthworm Species IDEntification"
+	"github/coljac/sensie": {
+	"id": "github/coljac/sensie",
+	"title": "github/coljac/sensie",
+	"url": " https://rseng.github.io/software/repository/github/coljac/sensie",
+	"content": "Toolset for probing the sensitivity of a deep neural network model to various properties of the data."
 	},
-	"github/jkimlab/msPIPE": {
-	"id": "github/jkimlab/msPIPE",
-	"title": "github/jkimlab/msPIPE",
-	"url": " https://rseng.github.io/software/repository/github/jkimlab/msPIPE",
-	"content": "None"
+	"github/ideasrule/platon": {
+	"id": "github/ideasrule/platon",
+	"title": "github/ideasrule/platon",
+	"url": " https://rseng.github.io/software/repository/github/ideasrule/platon",
+	"content": "Fast exoplanet transmission spectrum calculator"
 	},
-	"github/cumbof/honto": {
-	"id": "github/cumbof/honto",
-	"title": "github/cumbof/honto",
-	"url": " https://rseng.github.io/software/repository/github/cumbof/honto",
-	"content": "A novel method for assessing and measuring homophily in networks"
+	"github/sing-group/my-brain-seq": {
+	"id": "github/sing-group/my-brain-seq",
+	"title": "github/sing-group/my-brain-seq",
+	"url": " https://rseng.github.io/software/repository/github/sing-group/my-brain-seq",
+	"content": "myBrain-Seq: a Compi pipeline for miRNA-Seq data analysis in neuropsychiatry"
 	},
-	"github/carpyncho/carpyncho-py": {
-	"id": "github/carpyncho/carpyncho-py",
-	"title": "github/carpyncho/carpyncho-py",
-	"url": " https://rseng.github.io/software/repository/github/carpyncho/carpyncho-py",
-	"content": "Carpyncho client for python"
+	"github/sing-group/seda": {
+	"id": "github/sing-group/seda",
+	"title": "github/sing-group/seda",
+	"url": " https://rseng.github.io/software/repository/github/sing-group/seda",
+	"content": "SEquence DAtaset builder"
 	},
-	"github/AnantharamanLab/vRhyme": {
-	"id": "github/AnantharamanLab/vRhyme",
-	"title": "github/AnantharamanLab/vRhyme",
-	"url": " https://rseng.github.io/software/repository/github/AnantharamanLab/vRhyme",
-	"content": "Binning Virus Genomes from Metagenomes"
+	"github/shihyuntang/igrins_rv": {
+	"id": "github/shihyuntang/igrins_rv",
+	"title": "github/shihyuntang/igrins_rv",
+	"url": " https://rseng.github.io/software/repository/github/shihyuntang/igrins_rv",
+	"content": "Welcome to IGRINS RV, a open source pipeline for extracting radial velocity (RV) for the Immersion GRating INfrared Spectrometer (IGRINS) instrument. Please contact asa.stahl@rice.edu or sytang@lowell.edu for more detail."
 	},
-	"github/jdeast/EXOFASTv2": {
-	"id": "github/jdeast/EXOFASTv2",
-	"title": "github/jdeast/EXOFASTv2",
-	"url": " https://rseng.github.io/software/repository/github/jdeast/EXOFASTv2",
-	"content": "An exoplanet transit, radial velocity, astrometry, and stellar fitting software package in IDL"
+	"github/vanheeringen-lab/gimmemotifs": {
+	"id": "github/vanheeringen-lab/gimmemotifs",
+	"title": "github/vanheeringen-lab/gimmemotifs",
+	"url": " https://rseng.github.io/software/repository/github/vanheeringen-lab/gimmemotifs",
+	"content": "Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments.  See full GimmeMotifs documentation for detailed installation instructions and usage examples."
 	},
-	"github/PaulSt/NGSTrefftz": {
-	"id": "github/PaulSt/NGSTrefftz",
-	"title": "github/PaulSt/NGSTrefftz",
-	"url": " https://rseng.github.io/software/repository/github/PaulSt/NGSTrefftz",
-	"content": "Add-On to NGSolve for Trefftz methods"
+	"github/Ramialison-Lab-ARMI/3DCardiomics": {
+	"id": "github/Ramialison-Lab-ARMI/3DCardiomics",
+	"title": "github/Ramialison-Lab-ARMI/3DCardiomics",
+	"url": " https://rseng.github.io/software/repository/github/Ramialison-Lab-ARMI/3DCardiomics",
+	"content": "A visual system for the exploration of cardiac transcriptome data"
 	},
-	"github/jpuritz/dDocent": {
-	"id": "github/jpuritz/dDocent",
-	"title": "github/jpuritz/dDocent",
-	"url": " https://rseng.github.io/software/repository/github/jpuritz/dDocent",
-	"content": "a bash pipeline for RAD sequencing"
+	"github/gururajw/superlite": {
+	"id": "github/gururajw/superlite",
+	"title": "github/gururajw/superlite",
+	"url": " https://rseng.github.io/software/repository/github/gururajw/superlite",
+	"content": "SuperLite: IMC-DDMC Radiation Transport Code for Interacting Transients"
 	},
-	"github/antoinediez/Sisyphe": {
-	"id": "github/antoinediez/Sisyphe",
-	"title": "github/antoinediez/Sisyphe",
-	"url": " https://rseng.github.io/software/repository/github/antoinediez/Sisyphe",
-	"content": "Simulation of Systems of interacting mean-field Particles with High Efficiency"
+	"github/pmelsted/pizzly": {
+	"id": "github/pmelsted/pizzly",
+	"title": "github/pmelsted/pizzly",
+	"url": " https://rseng.github.io/software/repository/github/pmelsted/pizzly",
+	"content": "Fast fusion detection using kallisto"
+	},
+	"github/carpyncho/carpyncho-py": {
+	"id": "github/carpyncho/carpyncho-py",
+	"title": "github/carpyncho/carpyncho-py",
+	"url": " https://rseng.github.io/software/repository/github/carpyncho/carpyncho-py",
+	"content": "Carpyncho client for python"
 	},
-	"github/kboone/avocado": {
-	"id": "github/kboone/avocado",
-	"title": "github/kboone/avocado",
-	"url": " https://rseng.github.io/software/repository/github/kboone/avocado",
-	"content": "Photometric Classification of Astronomical Transients and Variables With Biased Spectroscopic Samples"
+	"github/stan-dev/stan": {
+	"id": "github/stan-dev/stan",
+	"title": "github/stan-dev/stan",
+	"url": " https://rseng.github.io/software/repository/github/stan-dev/stan",
+	"content": "Stan development repository. The master branch contains the current release. The develop branch contains the latest stable development.  See the Developer Process Wiki for details.  "
 	},
-	"github/kboone/parsnip": {
-	"id": "github/kboone/parsnip",
-	"title": "github/kboone/parsnip",
-	"url": " https://rseng.github.io/software/repository/github/kboone/parsnip",
-	"content": "Deep generative modeling of astronomical transient light curves"
+	"github/gdrouart/MrMoose": {
+	"id": "github/gdrouart/MrMoose",
+	"title": "github/gdrouart/MrMoose",
+	"url": " https://rseng.github.io/software/repository/github/gdrouart/MrMoose",
+	"content": "MrMoose  is a Spectral Energy Distribution fitting procedure  using a Bayesian framework. In a nutshell, this code allows to fit user-defined models onto a set of multi-wavelength data, making use of spatial information and upper-limits with a consistent treatment. The code is highly flexible to allow its use for sources with complex structures."
 	},
-	"github/MarkMageeAstro/Riddler": {
-	"id": "github/MarkMageeAstro/Riddler",
-	"title": "github/MarkMageeAstro/Riddler",
-	"url": " https://rseng.github.io/software/repository/github/MarkMageeAstro/Riddler",
-	"content": "None"
+	"github/MesquiteProject/MesquiteCore": {
+	"id": "github/MesquiteProject/MesquiteCore",
+	"title": "github/MesquiteProject/MesquiteCore",
+	"url": " https://rseng.github.io/software/repository/github/MesquiteProject/MesquiteCore",
+	"content": "The core Mesquite repository"
 	},
-	"github/JuliaAI/Imbalance.jl": {
-	"id": "github/JuliaAI/Imbalance.jl",
-	"title": "github/JuliaAI/Imbalance.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaAI/Imbalance.jl",
-	"content": "A Julia toolbox with resampling methods to correct for class imbalance."
+	"github/nkallima/sim-universal-construction": {
+	"id": "github/nkallima/sim-universal-construction",
+	"title": "github/nkallima/sim-universal-construction",
+	"url": " https://rseng.github.io/software/repository/github/nkallima/sim-universal-construction",
+	"content": "An open-source framework for concurrent data-structures and benchmarks. "
 	},
-	"github/RemieJanssen/phylox": {
-	"id": "github/RemieJanssen/phylox",
-	"title": "github/RemieJanssen/phylox",
-	"url": " https://rseng.github.io/software/repository/github/RemieJanssen/phylox",
-	"content": "A python package with tools for constructing, manipulating, and analyzing phylogenetic networks."
+	"github/SPARC-FAIR-Codeathon/aqua": {
+	"id": "github/SPARC-FAIR-Codeathon/aqua",
+	"title": "github/SPARC-FAIR-Codeathon/aqua",
+	"url": " https://rseng.github.io/software/repository/github/SPARC-FAIR-Codeathon/aqua",
+	"content": "Advanced Query Architecture for the SPARC Portal."
 	},
-	"github/indralab/pybiopax": {
-	"id": "github/indralab/pybiopax",
-	"title": "github/indralab/pybiopax",
-	"url": " https://rseng.github.io/software/repository/github/indralab/pybiopax",
-	"content": "PyBioPAX: A python implementation of the BioPAX object model"
+	"github/kevin218/Eureka": {
+	"id": "github/kevin218/Eureka",
+	"title": "github/kevin218/Eureka",
+	"url": " https://rseng.github.io/software/repository/github/kevin218/Eureka",
+	"content": "Eureka! is a data reduction and analysis pipeline intended for time-series observations with the James Webb Space Telescope (JWST)."
 	},
-	"github/galactic-ai/haloflow": {
-	"id": "github/galactic-ai/haloflow",
-	"title": "github/galactic-ai/haloflow",
-	"url": " https://rseng.github.io/software/repository/github/galactic-ai/haloflow",
-	"content": "Simulation-Based Inference (SBI) using forward modeled galaxy photometry"
+	"github/theGreatHerrLebert/rustims": {
+	"id": "github/theGreatHerrLebert/rustims",
+	"title": "github/theGreatHerrLebert/rustims",
+	"url": " https://rseng.github.io/software/repository/github/theGreatHerrLebert/rustims",
+	"content": "A Framework for IMS-MS Raw Data Processing written in Rust and Python."
 	},
-	"github/octapps/octapps": {
-	"id": "github/octapps/octapps",
-	"title": "github/octapps/octapps",
-	"url": " https://rseng.github.io/software/repository/github/octapps/octapps",
-	"content": "Library of Octave functions for continuous gravitational-wave data analysis"
+	"github/PfizerRD/sit2standpy": {
+	"id": "github/PfizerRD/sit2standpy",
+	"title": "github/PfizerRD/sit2standpy",
+	"url": " https://rseng.github.io/software/repository/github/PfizerRD/sit2standpy",
+	"content": "Python based module framework for detecting sit-to-stand transitions"
 	},
-	"github/mperezcarrasco/AnomalyALeRCE": {
-	"id": "github/mperezcarrasco/AnomalyALeRCE",
-	"title": "github/mperezcarrasco/AnomalyALeRCE",
-	"url": " https://rseng.github.io/software/repository/github/mperezcarrasco/AnomalyALeRCE",
-	"content": "Anomaly Detector for ALeRCE broker 🤖"
+	"github/zhanglabtools/CASAVA": {
+	"id": "github/zhanglabtools/CASAVA",
+	"title": "github/zhanglabtools/CASAVA",
+	"url": " https://rseng.github.io/software/repository/github/zhanglabtools/CASAVA",
+	"content": "Resources of our paper CASAVA"
 	},
-	"github/Effective-Quadratures/Effective-Quadratures": {
-	"id": "github/Effective-Quadratures/Effective-Quadratures",
-	"title": "github/Effective-Quadratures/Effective-Quadratures",
-	"url": " https://rseng.github.io/software/repository/github/Effective-Quadratures/Effective-Quadratures",
-	"content": "None"
+	"github/WorkflowConversion/CTDConverter": {
+	"id": "github/WorkflowConversion/CTDConverter",
+	"title": "github/WorkflowConversion/CTDConverter",
+	"url": " https://rseng.github.io/software/repository/github/WorkflowConversion/CTDConverter",
+	"content": "Series of python scripts to convert CTD files into other formats such as Galaxy, CWL"
 	},
-	"github/jrkerns/pylinac": {
-	"id": "github/jrkerns/pylinac",
-	"title": "github/jrkerns/pylinac",
-	"url": " https://rseng.github.io/software/repository/github/jrkerns/pylinac",
-	"content": "A TG-142 toolkit for doing routine linear accelerator quality assurance"
+	"github/WorkflowConversion/CTDopts": {
+	"id": "github/WorkflowConversion/CTDopts",
+	"title": "github/WorkflowConversion/CTDopts",
+	"url": " https://rseng.github.io/software/repository/github/WorkflowConversion/CTDopts",
+	"content": "Gives your command-line tools a CTD-compatible interface"
 	},
-	"github/ArtificialStellarPopulations/ArtPop": {
-	"id": "github/ArtificialStellarPopulations/ArtPop",
-	"title": "github/ArtificialStellarPopulations/ArtPop",
-	"url": " https://rseng.github.io/software/repository/github/ArtificialStellarPopulations/ArtPop",
-	"content": "Building artificial galaxies one star at a time. "
+	"github/staphopia/staphopia-paper": {
+	"id": "github/staphopia/staphopia-paper",
+	"title": "github/staphopia/staphopia-paper",
+	"url": " https://rseng.github.io/software/repository/github/staphopia/staphopia-paper",
+	"content": "Code used for Staphopia manuscript"
 	},
-	"github/duducosmos/pycosmicstar": {
-	"id": "github/duducosmos/pycosmicstar",
-	"title": "github/duducosmos/pycosmicstar",
-	"url": " https://rseng.github.io/software/repository/github/duducosmos/pycosmicstar",
-	"content": "The Cosmic Star Formation Rate Model"
+	"github/oliveirara/polyMV": {
+	"id": "github/oliveirara/polyMV",
+	"title": "github/oliveirara/polyMV",
+	"url": " https://rseng.github.io/software/repository/github/oliveirara/polyMV",
+	"content": "Python package that converts multipolar coefficients into Multipole Vectors and Fréchet Vectors"
 	},
-	"github/bandframework/Taweret": {
-	"id": "github/bandframework/Taweret",
-	"title": "github/bandframework/Taweret",
-	"url": " https://rseng.github.io/software/repository/github/bandframework/Taweret",
-	"content": "Python  package for Bayesian Model Mixing"
+	"github/iipharma/pharmamind-molminer": {
+	"id": "github/iipharma/pharmamind-molminer",
+	"title": "github/iipharma/pharmamind-molminer",
+	"url": " https://rseng.github.io/software/repository/github/iipharma/pharmamind-molminer",
+	"content": "PharmaMind® is an innovative drug discovery platform that integrates advanced artificial intelligence and computational simulation design techniques, which is suitable for real-world novel drug R&amp;D."
 	},
-	"github/thom991/MSIQuickView": {
-	"id": "github/thom991/MSIQuickView",
-	"title": "github/thom991/MSIQuickView",
-	"url": " https://rseng.github.io/software/repository/github/thom991/MSIQuickView",
-	"content": "None"
+	"github/kgullikson88/Companion-Finder": {
+	"id": "github/kgullikson88/Companion-Finder",
+	"title": "github/kgullikson88/Companion-Finder",
+	"url": " https://rseng.github.io/software/repository/github/kgullikson88/Companion-Finder",
+	"content": "A set of scripts for looking for planets and binary companions in time series spectra"
 	},
-	"github/FreBio/komics": {
-	"id": "github/FreBio/komics",
-	"title": "github/FreBio/komics",
-	"url": " https://rseng.github.io/software/repository/github/FreBio/komics",
-	"content": "Kinetoplast genOMICS"
+	"github/kgullikson88/Telluric-Fitter": {
+	"id": "github/kgullikson88/Telluric-Fitter",
+	"title": "github/kgullikson88/Telluric-Fitter",
+	"url": " https://rseng.github.io/software/repository/github/kgullikson88/Telluric-Fitter",
+	"content": "Telluric fitting made easy"
 	},
-	"github/martinjameswhite/ZeldovichRecon": {
-	"id": "github/martinjameswhite/ZeldovichRecon",
-	"title": "github/martinjameswhite/ZeldovichRecon",
-	"url": " https://rseng.github.io/software/repository/github/martinjameswhite/ZeldovichRecon",
-	"content": "Code to compute the post-reconstruction halo correlation function using the Zeldovich approximation."
+	"github/JEFworks-Lab/STdeconvolve": {
+	"id": "github/JEFworks-Lab/STdeconvolve",
+	"title": "github/JEFworks-Lab/STdeconvolve",
+	"url": " https://rseng.github.io/software/repository/github/JEFworks-Lab/STdeconvolve",
+	"content": "Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data"
 	},
-	"github/martinjameswhite/directsht": {
-	"id": "github/martinjameswhite/directsht",
-	"title": "github/martinjameswhite/directsht",
-	"url": " https://rseng.github.io/software/repository/github/martinjameswhite/directsht",
-	"content": "Direct spherical harmonic transform code for point sets on the sphere."
+	"github/valentineap/pyprop8": {
+	"id": "github/valentineap/pyprop8",
+	"title": "github/valentineap/pyprop8",
+	"url": " https://rseng.github.io/software/repository/github/valentineap/pyprop8",
+	"content": "A lightweight  Python code to calculate the seismic response of a layered half-space (including static components), and derivatives of the wavefield wrt source components."
 	},
-	"github/biaslab/RxInfer.jl": {
-	"id": "github/biaslab/RxInfer.jl",
-	"title": "github/biaslab/RxInfer.jl",
-	"url": " https://rseng.github.io/software/repository/github/biaslab/RxInfer.jl",
-	"content": "Julia package for automated Bayesian inference on a factor graph with reactive message passing"
+	"github/MyWebIntelligence/MyWebIntelligencePython": {
+	"id": "github/MyWebIntelligence/MyWebIntelligencePython",
+	"title": "github/MyWebIntelligence/MyWebIntelligencePython",
+	"url": " https://rseng.github.io/software/repository/github/MyWebIntelligence/MyWebIntelligencePython",
+	"content": "Class Python App of My Web Intelligence"
 	},
-	"github/pkgw/pwkit": {
-	"id": "github/pkgw/pwkit",
-	"title": "github/pkgw/pwkit",
-	"url": " https://rseng.github.io/software/repository/github/pkgw/pwkit",
-	"content": "Miscellaneous science/astronomy tools."
+	"github/lucydot/effmass": {
+	"id": "github/lucydot/effmass",
+	"title": "github/lucydot/effmass",
+	"url": " https://rseng.github.io/software/repository/github/lucydot/effmass",
+	"content": "Calculates various definitions of effective mass from the electronic bandstructure of a semiconductor."
 	},
-	"github/PaulKuin/uvotpy": {
-	"id": "github/PaulKuin/uvotpy",
-	"title": "github/PaulKuin/uvotpy",
-	"url": " https://rseng.github.io/software/repository/github/PaulKuin/uvotpy",
-	"content": "Swift UVOT grisms - spectral extraction"
+	"github/carnotresearch/cr-sparse": {
+	"id": "github/carnotresearch/cr-sparse",
+	"title": "github/carnotresearch/cr-sparse",
+	"url": " https://rseng.github.io/software/repository/github/carnotresearch/cr-sparse",
+	"content": "Functional models and algorithms for sparse signal processing"
 	},
-	"github/insightsengineering/rbmi": {
-	"id": "github/insightsengineering/rbmi",
-	"title": "github/insightsengineering/rbmi",
-	"url": " https://rseng.github.io/software/repository/github/insightsengineering/rbmi",
-	"content": "Reference based multiple imputation R package"
+	"github/ekerrison/RadioSED": {
+	"id": "github/ekerrison/RadioSED",
+	"title": "github/ekerrison/RadioSED",
+	"url": " https://rseng.github.io/software/repository/github/ekerrison/RadioSED",
+	"content": "Radio SED fitting for AGN"
 	},
-	"github/dfujim/bfit": {
-	"id": "github/dfujim/bfit",
-	"title": "github/dfujim/bfit",
-	"url": " https://rseng.github.io/software/repository/github/dfujim/bfit",
-	"content": "A Python application for the analysis of β-NMR and β-NQR data taken at TRIUMF."
+	"github/TBLabFJD/DBofAFs": {
+	"id": "github/TBLabFJD/DBofAFs",
+	"title": "github/TBLabFJD/DBofAFs",
+	"url": " https://rseng.github.io/software/repository/github/TBLabFJD/DBofAFs",
+	"content": "Pipeline for database creation of allele frequencies "
 	},
-	"github/MesserLab/SLiM": {
-	"id": "github/MesserLab/SLiM",
-	"title": "github/MesserLab/SLiM",
-	"url": " https://rseng.github.io/software/repository/github/MesserLab/SLiM",
-	"content": "SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology.  It is highly flexible, with a built-in scripting language, and has a cross-platform graphical modeling environment called SLiMgui."
+	"github/KorfLab/SNAP": {
+	"id": "github/KorfLab/SNAP",
+	"title": "github/KorfLab/SNAP",
+	"url": " https://rseng.github.io/software/repository/github/KorfLab/SNAP",
+	"content": "Gene prediction software"
 	},
-	"github/cholla-hydro/cholla": {
-	"id": "github/cholla-hydro/cholla",
-	"title": "github/cholla-hydro/cholla",
-	"url": " https://rseng.github.io/software/repository/github/cholla-hydro/cholla",
-	"content": "A GPU-based hydro code"
+	"github/amusecode/TRES": {
+	"id": "github/amusecode/TRES",
+	"title": "github/amusecode/TRES",
+	"url": " https://rseng.github.io/software/repository/github/amusecode/TRES",
+	"content": "TRiple Evolution Simulation package"
 	},
-	"github/PfizerRD/sit2standpy": {
-	"id": "github/PfizerRD/sit2standpy",
-	"title": "github/PfizerRD/sit2standpy",
-	"url": " https://rseng.github.io/software/repository/github/PfizerRD/sit2standpy",
-	"content": "Python based module framework for detecting sit-to-stand transitions"
+	"github/amusecode/amuse": {
+	"id": "github/amusecode/amuse",
+	"title": "github/amusecode/amuse",
+	"url": " https://rseng.github.io/software/repository/github/amusecode/amuse",
+	"content": "Astrophysical Multipurpose Software Environment. This is the main repository  for AMUSE"
 	},
-	"github/MRChemSoft/mrchem": {
-	"id": "github/MRChemSoft/mrchem",
-	"title": "github/MRChemSoft/mrchem",
-	"url": " https://rseng.github.io/software/repository/github/MRChemSoft/mrchem",
-	"content": "MultiResolution Chemistry"
+	"github/moldyn/msmhelper": {
+	"id": "github/moldyn/msmhelper",
+	"title": "github/moldyn/msmhelper",
+	"url": " https://rseng.github.io/software/repository/github/moldyn/msmhelper",
+	"content": "Helper function for Markov State Models"
 	},
-	"github/FunctionalUrology/MLcps": {
-	"id": "github/FunctionalUrology/MLcps",
-	"title": "github/FunctionalUrology/MLcps",
-	"url": " https://rseng.github.io/software/repository/github/FunctionalUrology/MLcps",
+	"github/a-renzini/pygwb": {
+	"id": "github/a-renzini/pygwb",
+	"title": "github/a-renzini/pygwb",
+	"url": " https://rseng.github.io/software/repository/github/a-renzini/pygwb",
 	"content": "None"
 	},
-	"github/UrbanRuralSystems/ur-scape": {
-	"id": "github/UrbanRuralSystems/ur-scape",
-	"title": "github/UrbanRuralSystems/ur-scape",
-	"url": " https://rseng.github.io/software/repository/github/UrbanRuralSystems/ur-scape",
-	"content": "None"
+	"github/andycasey/sick": {
+	"id": "github/andycasey/sick",
+	"title": "github/andycasey/sick",
+	"url": " https://rseng.github.io/software/repository/github/andycasey/sick",
+	"content": "sick, the spectroscopic inference crank"
 	},
-	"github/ekiefl/pooltool": {
-	"id": "github/ekiefl/pooltool",
-	"title": "github/ekiefl/pooltool",
-	"url": " https://rseng.github.io/software/repository/github/ekiefl/pooltool",
-	"content": "A sandbox billiards game that emphasizes realistic physics"
+	"github/ewanbarr/peasoup": {
+	"id": "github/ewanbarr/peasoup",
+	"title": "github/ewanbarr/peasoup",
+	"url": " https://rseng.github.io/software/repository/github/ewanbarr/peasoup",
+	"content": "C++/CUDA GPU pulsar searching library"
 	},
-	"github/SYalouz/QuantNBody": {
-	"id": "github/SYalouz/QuantNBody",
-	"title": "github/SYalouz/QuantNBody",
-	"url": " https://rseng.github.io/software/repository/github/SYalouz/QuantNBody",
-	"content": "QuantNBody : a python package for quantum chemistry/physics to manipulate many-body operators and wave functions."
+	"github/TearsWaiting/MIMML": {
+	"id": "github/TearsWaiting/MIMML",
+	"title": "github/TearsWaiting/MIMML",
+	"url": " https://rseng.github.io/software/repository/github/TearsWaiting/MIMML",
+	"content": "The implement of MIMML in paper: Accelerating Bioactive Peptides Discovery via Mutual Information based Meta-learning"
 	},
-	"github/mirapy-org/mirapy": {
-	"id": "github/mirapy-org/mirapy",
-	"title": "github/mirapy-org/mirapy",
-	"url": " https://rseng.github.io/software/repository/github/mirapy-org/mirapy",
-	"content": "MiraPy: A Python package for Deep Learning in Astronomy"
+	"github/jcombs1/blasr": {
+	"id": "github/jcombs1/blasr",
+	"title": "github/jcombs1/blasr",
+	"url": " https://rseng.github.io/software/repository/github/jcombs1/blasr",
+	"content": "BLASR: The PacBio® long read aligner"
 	},
-	"github/ckay314/OSPREI": {
-	"id": "github/ckay314/OSPREI",
-	"title": "github/ckay314/OSPREI",
-	"url": " https://rseng.github.io/software/repository/github/ckay314/OSPREI",
-	"content": "Fully coupled system of ForeCAT-based models"
+	"github/jet-net/JetNet": {
+	"id": "github/jet-net/JetNet",
+	"title": "github/jet-net/JetNet",
+	"url": " https://rseng.github.io/software/repository/github/jet-net/JetNet",
+	"content": "For developing and reproducing ML + HEP projects."
 	},
-	"github/elliohow/fMRI_ROI_Analysis_Tool": {
-	"id": "github/elliohow/fMRI_ROI_Analysis_Tool",
-	"title": "github/elliohow/fMRI_ROI_Analysis_Tool",
-	"url": " https://rseng.github.io/software/repository/github/elliohow/fMRI_ROI_Analysis_Tool",
-	"content": "An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio."
+	"github/osallou/cassiopee-c": {
+	"id": "github/osallou/cassiopee-c",
+	"title": "github/osallou/cassiopee-c",
+	"url": " https://rseng.github.io/software/repository/github/osallou/cassiopee-c",
+	"content": "Cassiopee index and search library C implementation"
 	},
 	"github/opnavlab/sonic": {
 	"id": "github/opnavlab/sonic",
@@ -12513,660 +12081,690 @@
 	"url": " https://rseng.github.io/software/repository/github/opnavlab/sonic",
 	"content": "SONIC is an object-oriented optical navigation (OPNAV) toolkit written in MATLAB."
 	},
-	"github/archaeo-pteryx/PowerSpecCovFFT": {
-	"id": "github/archaeo-pteryx/PowerSpecCovFFT",
-	"title": "github/archaeo-pteryx/PowerSpecCovFFT",
-	"url": " https://rseng.github.io/software/repository/github/archaeo-pteryx/PowerSpecCovFFT",
-	"content": "FFTLog-based computation of non-Gaussian analytic covariance of galaxy power spectrum multipoles "
-	},
-	"github/dtanoglidis/DeepShadows": {
-	"id": "github/dtanoglidis/DeepShadows",
-	"title": "github/dtanoglidis/DeepShadows",
-	"url": " https://rseng.github.io/software/repository/github/dtanoglidis/DeepShadows",
-	"content": "Repository for the project &#34;DeepShadows: Separating LSBGs from artifacts using Deep Learning&#34;"
-	},
-	"github/nu-radio/NuRadioMC": {
-	"id": "github/nu-radio/NuRadioMC",
-	"title": "github/nu-radio/NuRadioMC",
-	"url": " https://rseng.github.io/software/repository/github/nu-radio/NuRadioMC",
-	"content": "A Monte Carlo simulation package for radio neutrino detectors"
+	"github/agnetelundgaard/BALDR": {
+	"id": "github/agnetelundgaard/BALDR",
+	"title": "github/agnetelundgaard/BALDR",
+	"url": " https://rseng.github.io/software/repository/github/agnetelundgaard/BALDR",
+	"content": "None"
 	},
-	"github/Kaixhin/spinning-up-basic": {
-	"id": "github/Kaixhin/spinning-up-basic",
-	"title": "github/Kaixhin/spinning-up-basic",
-	"url": " https://rseng.github.io/software/repository/github/Kaixhin/spinning-up-basic",
-	"content": "Basic versions of agents from Spinning Up in Deep RL written in PyTorch"
+	"github/ucl-exoplanets/ExoTETHyS": {
+	"id": "github/ucl-exoplanets/ExoTETHyS",
+	"title": "github/ucl-exoplanets/ExoTETHyS",
+	"url": " https://rseng.github.io/software/repository/github/ucl-exoplanets/ExoTETHyS",
+	"content": "None"
 	},
-	"github/Kaixhin/dockerfiles": {
-	"id": "github/Kaixhin/dockerfiles",
-	"title": "github/Kaixhin/dockerfiles",
-	"url": " https://rseng.github.io/software/repository/github/Kaixhin/dockerfiles",
-	"content": "Compilation of Dockerfiles with automated builds enabled on the Docker Registry"
+	"github/ucl-exoplanets/pylightcurve": {
+	"id": "github/ucl-exoplanets/pylightcurve",
+	"title": "github/ucl-exoplanets/pylightcurve",
+	"url": " https://rseng.github.io/software/repository/github/ucl-exoplanets/pylightcurve",
+	"content": "A python package for modeling and analysing transit light-curves."
 	},
-	"github/Kaixhin/Atari": {
-	"id": "github/Kaixhin/Atari",
-	"title": "github/Kaixhin/Atari",
-	"url": " https://rseng.github.io/software/repository/github/Kaixhin/Atari",
-	"content": "Persistent advantage learning dueling double DQN for the Arcade Learning Environment"
+	"github/ucl-exoplanets/ExoGAN_public": {
+	"id": "github/ucl-exoplanets/ExoGAN_public",
+	"title": "github/ucl-exoplanets/ExoGAN_public",
+	"url": " https://rseng.github.io/software/repository/github/ucl-exoplanets/ExoGAN_public",
+	"content": "None"
 	},
-	"github/Kaixhin/Rainbow": {
-	"id": "github/Kaixhin/Rainbow",
-	"title": "github/Kaixhin/Rainbow",
-	"url": " https://rseng.github.io/software/repository/github/Kaixhin/Rainbow",
-	"content": "Rainbow: Combining Improvements in Deep Reinforcement Learning"
+	"github/ucl-exoplanets/TauREx3_public": {
+	"id": "github/ucl-exoplanets/TauREx3_public",
+	"title": "github/ucl-exoplanets/TauREx3_public",
+	"url": " https://rseng.github.io/software/repository/github/ucl-exoplanets/TauREx3_public",
+	"content": "Public release of TauREx3"
 	},
-	"github/Kaixhin/Autoencoders": {
-	"id": "github/Kaixhin/Autoencoders",
-	"title": "github/Kaixhin/Autoencoders",
-	"url": " https://rseng.github.io/software/repository/github/Kaixhin/Autoencoders",
-	"content": "Torch implementations of various types of autoencoders"
+	"github/wonderful1/CNV-PG": {
+	"id": "github/wonderful1/CNV-PG",
+	"title": "github/wonderful1/CNV-PG",
+	"url": " https://rseng.github.io/software/repository/github/wonderful1/CNV-PG",
+	"content": "CNV-PG: a machine-learning framework for accurate copy number variation predicting and genotyping"
 	},
-	"github/Kaixhin/FGLab": {
-	"id": "github/Kaixhin/FGLab",
-	"title": "github/Kaixhin/FGLab",
-	"url": " https://rseng.github.io/software/repository/github/Kaixhin/FGLab",
-	"content": "Future Gadget Laboratory"
+	"github/klevis-a/kinematics-vis": {
+	"id": "github/klevis-a/kinematics-vis",
+	"title": "github/klevis-a/kinematics-vis",
+	"url": " https://rseng.github.io/software/repository/github/klevis-a/kinematics-vis",
+	"content": "JavaScript application for visualizing and analyzing shoulder joint kinematics"
 	},
-	"github/Kaixhin/PlaNet": {
-	"id": "github/Kaixhin/PlaNet",
-	"title": "github/Kaixhin/PlaNet",
-	"url": " https://rseng.github.io/software/repository/github/Kaixhin/PlaNet",
-	"content": "Deep Planning Network: Control from pixels by latent planning with learned dynamics"
+	"github/Trovemaster/exocross": {
+	"id": "github/Trovemaster/exocross",
+	"title": "github/Trovemaster/exocross",
+	"url": " https://rseng.github.io/software/repository/github/Trovemaster/exocross",
+	"content": "Fortran 2003 code to generate molecular spectra, partition functions, lifetimes, cooling functions etc  using ExoMol line lists"
 	},
-	"github/Kaixhin/FGMachine": {
-	"id": "github/Kaixhin/FGMachine",
-	"title": "github/Kaixhin/FGMachine",
-	"url": " https://rseng.github.io/software/repository/github/Kaixhin/FGMachine",
-	"content": "Future Gadget Machine"
+	"github/Trovemaster/Duo": {
+	"id": "github/Trovemaster/Duo",
+	"title": "github/Trovemaster/Duo",
+	"url": " https://rseng.github.io/software/repository/github/Trovemaster/Duo",
+	"content": "Duo is a diatomic code for solving a fully coupled rovibronic Schroedinger equation"
 	},
-	"github/Ambuj-UF/APOP": {
-	"id": "github/Ambuj-UF/APOP",
-	"title": "github/Ambuj-UF/APOP",
-	"url": " https://rseng.github.io/software/repository/github/Ambuj-UF/APOP",
-	"content": "Allostery pocket prediction"
+	"github/Trovemaster/TROVE": {
+	"id": "github/Trovemaster/TROVE",
+	"title": "github/Trovemaster/TROVE",
+	"url": " https://rseng.github.io/software/repository/github/Trovemaster/TROVE",
+	"content": "Theoretical ROVibrational Energies: A variational program for accurate nuclear motion calculations"
 	},
-	"github/magnusmanske/snpomatic": {
-	"id": "github/magnusmanske/snpomatic",
-	"title": "github/magnusmanske/snpomatic",
-	"url": " https://rseng.github.io/software/repository/github/magnusmanske/snpomatic",
-	"content": "fast, stringent short-read mapping software"
+	"github/facebookresearch/segment-anything": {
+	"id": "github/facebookresearch/segment-anything",
+	"title": "github/facebookresearch/segment-anything",
+	"url": " https://rseng.github.io/software/repository/github/facebookresearch/segment-anything",
+	"content": "The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model."
 	},
-	"github/davidaknowles/leafcutter": {
-	"id": "github/davidaknowles/leafcutter",
-	"title": "github/davidaknowles/leafcutter",
-	"url": " https://rseng.github.io/software/repository/github/davidaknowles/leafcutter",
-	"content": "Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard"
+	"github/facebookresearch/faiss": {
+	"id": "github/facebookresearch/faiss",
+	"title": "github/facebookresearch/faiss",
+	"url": " https://rseng.github.io/software/repository/github/facebookresearch/faiss",
+	"content": "A library for efficient similarity search and clustering of dense vectors."
 	},
-	"github/niemasd/CoaTran": {
-	"id": "github/niemasd/CoaTran",
-	"title": "github/niemasd/CoaTran",
-	"url": " https://rseng.github.io/software/repository/github/niemasd/CoaTran",
-	"content": "CoaTran: Coalescent tree simulation along a transmission network"
+	"github/finsberg/gotranx": {
+	"id": "github/finsberg/gotranx",
+	"title": "github/finsberg/gotranx",
+	"url": " https://rseng.github.io/software/repository/github/finsberg/gotranx",
+	"content": "Next generation ODE translator"
 	},
-	"github/konfound-project/konfound": {
-	"id": "github/konfound-project/konfound",
-	"title": "github/konfound-project/konfound",
-	"url": " https://rseng.github.io/software/repository/github/konfound-project/konfound",
-	"content": "R package for carrying out sensitivity analysis"
+	"github/seap-udea/iWander": {
+	"id": "github/seap-udea/iWander",
+	"title": "github/seap-udea/iWander",
+	"url": " https://rseng.github.io/software/repository/github/seap-udea/iWander",
+	"content": "Dynamics of Interstellar Wanderers"
 	},
-	"github/mj-will/nessai": {
-	"id": "github/mj-will/nessai",
-	"title": "github/mj-will/nessai",
-	"url": " https://rseng.github.io/software/repository/github/mj-will/nessai",
-	"content": "nessai: Nested Sampling with Artificial Intelligence"
+	"github/psheehan/pdspy": {
+	"id": "github/psheehan/pdspy",
+	"title": "github/psheehan/pdspy",
+	"url": " https://rseng.github.io/software/repository/github/psheehan/pdspy",
+	"content": "pdspy: MCMC for Monte Carlo Dust Radiative Transfer Modeling"
 	},
-	"github/R-Vessel-X/SlicerRVXLiverSegmentation": {
-	"id": "github/R-Vessel-X/SlicerRVXLiverSegmentation",
-	"title": "github/R-Vessel-X/SlicerRVXLiverSegmentation",
-	"url": " https://rseng.github.io/software/repository/github/R-Vessel-X/SlicerRVXLiverSegmentation",
-	"content": "3D Slicer plugin for Liver Anatomy Annotation by R-Vessel-X"
+	"github/toddy15/medicalterms": {
+	"id": "github/toddy15/medicalterms",
+	"title": "github/toddy15/medicalterms",
+	"url": " https://rseng.github.io/software/repository/github/toddy15/medicalterms",
+	"content": "German medical dictionary words"
 	},
-	"github/yangao07/TideHunter": {
-	"id": "github/yangao07/TideHunter",
-	"title": "github/yangao07/TideHunter",
-	"url": " https://rseng.github.io/software/repository/github/yangao07/TideHunter",
-	"content": "TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain"
+	"github/gheald/rmclean": {
+	"id": "github/gheald/rmclean",
+	"title": "github/gheald/rmclean",
+	"url": " https://rseng.github.io/software/repository/github/gheald/rmclean",
+	"content": "RM-CLEAN for miriad"
 	},
-	"github/yangao07/abPOA": {
-	"id": "github/yangao07/abPOA",
-	"title": "github/yangao07/abPOA",
-	"url": " https://rseng.github.io/software/repository/github/yangao07/abPOA",
-	"content": "abPOA: an SIMD-based C library for fast partial order alignment using adaptive band"
+	"github/GEUS-Glaciology-and-Climate/pypromice": {
+	"id": "github/GEUS-Glaciology-and-Climate/pypromice",
+	"title": "github/GEUS-Glaciology-and-Climate/pypromice",
+	"url": " https://rseng.github.io/software/repository/github/GEUS-Glaciology-and-Climate/pypromice",
+	"content": "Process AWS data from L0 (raw logger) through Lx (end user)"
 	},
-	"github/konradhoeffner/hdt": {
-	"id": "github/konradhoeffner/hdt",
-	"title": "github/konradhoeffner/hdt",
-	"url": " https://rseng.github.io/software/repository/github/konradhoeffner/hdt",
-	"content": "Library for the Header Dictionary Triples (HDT) compression file format for RDF data."
+	"github/omuse-geoscience/omuse": {
+	"id": "github/omuse-geoscience/omuse",
+	"title": "github/omuse-geoscience/omuse",
+	"url": " https://rseng.github.io/software/repository/github/omuse-geoscience/omuse",
+	"content": " The Oceanographic Multi-purpose Software Environment: a package for multi-physics and multi-scale earth science simulations."
 	},
-	"github/semiautomaticgit/SemiAutomaticClassificationPlugin": {
-	"id": "github/semiautomaticgit/SemiAutomaticClassificationPlugin",
-	"title": "github/semiautomaticgit/SemiAutomaticClassificationPlugin",
-	"url": " https://rseng.github.io/software/repository/github/semiautomaticgit/SemiAutomaticClassificationPlugin",
+	"github/nanakiksc/zerone": {
+	"id": "github/nanakiksc/zerone",
+	"title": "github/nanakiksc/zerone",
+	"url": " https://rseng.github.io/software/repository/github/nanakiksc/zerone",
+	"content": "ChIP-seq discretization and quality control"
+	},
+	"github/ERA-URBAN/fm128_radar": {
+	"id": "github/ERA-URBAN/fm128_radar",
+	"title": "github/ERA-URBAN/fm128_radar",
+	"url": " https://rseng.github.io/software/repository/github/ERA-URBAN/fm128_radar",
 	"content": "None"
 	},
-	"github/mbonav/Exo_DMC": {
-	"id": "github/mbonav/Exo_DMC",
-	"title": "github/mbonav/Exo_DMC",
-	"url": " https://rseng.github.io/software/repository/github/mbonav/Exo_DMC",
-	"content": "Exoplanet Detection Map Calculator "
+	"github/ERA-URBAN/netcdf2littler": {
+	"id": "github/ERA-URBAN/netcdf2littler",
+	"title": "github/ERA-URBAN/netcdf2littler",
+	"url": " https://rseng.github.io/software/repository/github/ERA-URBAN/netcdf2littler",
+	"content": "An application to convert NetCDF files to the Little-R format. The Little-R format is the accepted input format for the WRF data assimilation system (WRFDA) preprocessor (obsproc). Currently only the conversion of synoptical weather stations are supported by this application."
 	},
-	"github/ideasrule/platon": {
-	"id": "github/ideasrule/platon",
-	"title": "github/ideasrule/platon",
-	"url": " https://rseng.github.io/software/repository/github/ideasrule/platon",
-	"content": "Fast exoplanet transmission spectrum calculator"
+	"github/uab-cgds-worthey/quac": {
+	"id": "github/uab-cgds-worthey/quac",
+	"title": "github/uab-cgds-worthey/quac",
+	"url": " https://rseng.github.io/software/repository/github/uab-cgds-worthey/quac",
+	"content": "🦆 Quality Control of WGS and exome samples 🦆"
 	},
-	"github/TearsWaiting/MIMML": {
-	"id": "github/TearsWaiting/MIMML",
-	"title": "github/TearsWaiting/MIMML",
-	"url": " https://rseng.github.io/software/repository/github/TearsWaiting/MIMML",
-	"content": "The implement of MIMML in paper: Accelerating Bioactive Peptides Discovery via Mutual Information based Meta-learning"
+	"github/jiffyclub/palettable": {
+	"id": "github/jiffyclub/palettable",
+	"title": "github/jiffyclub/palettable",
+	"url": " https://rseng.github.io/software/repository/github/jiffyclub/palettable",
+	"content": "Color palettes for Python"
 	},
-	"github/tikk3r/legacystamps": {
-	"id": "github/tikk3r/legacystamps",
-	"title": "github/tikk3r/legacystamps",
-	"url": " https://rseng.github.io/software/repository/github/tikk3r/legacystamps",
-	"content": "A tiny Python module to allow easy retrieval of a cutout from the Legacy survey."
+	"github/Cosmoglobe/zodipy": {
+	"id": "github/Cosmoglobe/zodipy",
+	"title": "github/Cosmoglobe/zodipy",
+	"url": " https://rseng.github.io/software/repository/github/Cosmoglobe/zodipy",
+	"content": "Zodiacal emission simulations in timestreams or HEALPix for solar system observers."
 	},
-	"github/tikk3r/lofar-h5plot": {
-	"id": "github/tikk3r/lofar-h5plot",
-	"title": "github/tikk3r/lofar-h5plot",
-	"url": " https://rseng.github.io/software/repository/github/tikk3r/lofar-h5plot",
-	"content": "A small GUI for plotting H5Parms produced during LOFAR calibration."
+	"github/mourisl/Lighter": {
+	"id": "github/mourisl/Lighter",
+	"title": "github/mourisl/Lighter",
+	"url": " https://rseng.github.io/software/repository/github/mourisl/Lighter",
+	"content": "Fast and memory-efficient sequencing error corrector"
 	},
-	"github/ch-var/SMART": {
-	"id": "github/ch-var/SMART",
-	"title": "github/ch-var/SMART",
-	"url": " https://rseng.github.io/software/repository/github/ch-var/SMART",
-	"content": "SMART (Spectral energy distributions Markov chain Analysis with Radiative Transfer models) is an open-source tool that implements a Bayesian Markov chain Monte Carlo (MCMC) method to fit the ultraviolet to millimetre spectral energy distributions (SEDs) of galaxies exclusively with radiative transfer models."
+	"github/PdIPS/CBX": {
+	"id": "github/PdIPS/CBX",
+	"title": "github/PdIPS/CBX",
+	"url": " https://rseng.github.io/software/repository/github/PdIPS/CBX",
+	"content": "None"
 	},
-	"github/glue-viz/glue": {
-	"id": "github/glue-viz/glue",
-	"title": "github/glue-viz/glue",
-	"url": " https://rseng.github.io/software/repository/github/glue-viz/glue",
-	"content": "Linked Data Visualizations Across Multiple Files"
+	"github/felixchenier/kineticstoolkit": {
+	"id": "github/felixchenier/kineticstoolkit",
+	"title": "github/felixchenier/kineticstoolkit",
+	"url": " https://rseng.github.io/software/repository/github/felixchenier/kineticstoolkit",
+	"content": "Kinetics Toolkit is an open-source, pure-python package of integrated classes and functions that aims to facilitate research in biomechanics using python."
 	},
-	"github/EskelandLab/ShinyArchRUiO": {
-	"id": "github/EskelandLab/ShinyArchRUiO",
-	"title": "github/EskelandLab/ShinyArchRUiO",
-	"url": " https://rseng.github.io/software/repository/github/EskelandLab/ShinyArchRUiO",
-	"content": "None"
+	"github/DarkQuestCosmology/dark_emulator_public": {
+	"id": "github/DarkQuestCosmology/dark_emulator_public",
+	"title": "github/DarkQuestCosmology/dark_emulator_public",
+	"url": " https://rseng.github.io/software/repository/github/DarkQuestCosmology/dark_emulator_public",
+	"content": "A cosmological tool for emulation of various basic statistics of dark matter haloes based on Dark Quest project (https://darkquestcosmology.github.io/)."
 	},
-	"github/stefanoMP/massiveGST": {
-	"id": "github/stefanoMP/massiveGST",
-	"title": "github/stefanoMP/massiveGST",
-	"url": " https://rseng.github.io/software/repository/github/stefanoMP/massiveGST",
-	"content": "None"
+	"github/r-lib/gert": {
+	"id": "github/r-lib/gert",
+	"title": "github/r-lib/gert",
+	"url": " https://rseng.github.io/software/repository/github/r-lib/gert",
+	"content": "Simple git client for R"
 	},
-	"github/VIB-PSB/MINI-EX": {
-	"id": "github/VIB-PSB/MINI-EX",
-	"title": "github/VIB-PSB/MINI-EX",
-	"url": " https://rseng.github.io/software/repository/github/VIB-PSB/MINI-EX",
-	"content": "Motif-Informed Network Inference of cell type-specific gene regulatory networks in plants"
+	"github/r-lib/credentials": {
+	"id": "github/r-lib/credentials",
+	"title": "github/r-lib/credentials",
+	"url": " https://rseng.github.io/software/repository/github/r-lib/credentials",
+	"content": "Tools for Managing SSH and Git Credentials"
 	},
-	"github/saeyslab/CytoNorm_Figures": {
-	"id": "github/saeyslab/CytoNorm_Figures",
-	"title": "github/saeyslab/CytoNorm_Figures",
-	"url": " https://rseng.github.io/software/repository/github/saeyslab/CytoNorm_Figures",
-	"content": "Scripts to replicate the figures reported in the CytofNorm publication. "
+	"github/MichelleLochner/astronomaly": {
+	"id": "github/MichelleLochner/astronomaly",
+	"title": "github/MichelleLochner/astronomaly",
+	"url": " https://rseng.github.io/software/repository/github/MichelleLochner/astronomaly",
+	"content": "A flexible framework for anomaly detection in astronomy."
 	},
-	"github/saeyslab/nichenetr": {
-	"id": "github/saeyslab/nichenetr",
-	"title": "github/saeyslab/nichenetr",
-	"url": " https://rseng.github.io/software/repository/github/saeyslab/nichenetr",
-	"content": "NicheNet: predict active ligand-target links between interacting cells"
+	"github/MFaymon/spINAR": {
+	"id": "github/MFaymon/spINAR",
+	"title": "github/MFaymon/spINAR",
+	"url": " https://rseng.github.io/software/repository/github/MFaymon/spINAR",
+	"content": "Semiparametric and parametric estimation and bootstrapping of integer-valued autoregressive (INAR) models."
 	},
-	"github/saeyslab/PeacoQC": {
-	"id": "github/saeyslab/PeacoQC",
-	"title": "github/saeyslab/PeacoQC",
-	"url": " https://rseng.github.io/software/repository/github/saeyslab/PeacoQC",
-	"content": "Peak-based selection of high quality cytometry data"
+	"github/kungfugo/BellDiagonalQudits.jl": {
+	"id": "github/kungfugo/BellDiagonalQudits.jl",
+	"title": "github/kungfugo/BellDiagonalQudits.jl",
+	"url": " https://rseng.github.io/software/repository/github/kungfugo/BellDiagonalQudits.jl",
+	"content": "None"
 	},
-	"github/mackelab/sbi": {
-	"id": "github/mackelab/sbi",
-	"title": "github/mackelab/sbi",
-	"url": " https://rseng.github.io/software/repository/github/mackelab/sbi",
-	"content": "Simulation-based inference in PyTorch"
+	"github/maxibor/sam2lca": {
+	"id": "github/maxibor/sam2lca",
+	"title": "github/maxibor/sam2lca",
+	"url": " https://rseng.github.io/software/repository/github/maxibor/sam2lca",
+	"content": "Lowest Common Ancestor from a SAM/BAM/CRAM alignment file"
 	},
-	"github/caseyjlaw/rtpipe": {
-	"id": "github/caseyjlaw/rtpipe",
-	"title": "github/caseyjlaw/rtpipe",
-	"url": " https://rseng.github.io/software/repository/github/caseyjlaw/rtpipe",
-	"content": "Pipeline for real-time fast transient detection in radio interferometric data (see also https://github.com/realfastvla/rfpipe)"
+	"github/mirnylab/pairtools": {
+	"id": "github/mirnylab/pairtools",
+	"title": "github/mirnylab/pairtools",
+	"url": " https://rseng.github.io/software/repository/github/mirnylab/pairtools",
+	"content": "CLI tools to process mapped Hi-C data"
 	},
-	"github/caseyjlaw/tpipe": {
-	"id": "github/caseyjlaw/tpipe",
-	"title": "github/caseyjlaw/tpipe",
-	"url": " https://rseng.github.io/software/repository/github/caseyjlaw/tpipe",
-	"content": "Python library to search radio interferometry data for dispersed (fast) transients **superseded by caseyjlaw/rtpipe**"
+	"github/mirnylab/cooler": {
+	"id": "github/mirnylab/cooler",
+	"title": "github/mirnylab/cooler",
+	"url": " https://rseng.github.io/software/repository/github/mirnylab/cooler",
+	"content": "is a support library for a sparse, compressed, binary persistent storage format, also called cooler, used to store genomic interaction data, such as Hi-C contact matrices."
 	},
-	"github/esandford/EightBitTransit": {
-	"id": "github/esandford/EightBitTransit",
-	"title": "github/esandford/EightBitTransit",
-	"url": " https://rseng.github.io/software/repository/github/esandford/EightBitTransit",
-	"content": "Calculate light curves from pixel grids, and recover shadow images from light curves."
+	"github/jiangyuts/facetclumps": {
+	"id": "github/jiangyuts/facetclumps",
+	"title": "github/jiangyuts/facetclumps",
+	"url": " https://rseng.github.io/software/repository/github/jiangyuts/facetclumps",
+	"content": "FacetClumps: A molecular clump detection algorithm based on Facet model"
 	},
-	"github/smoh/kinesis": {
-	"id": "github/smoh/kinesis",
-	"title": "github/smoh/kinesis",
-	"url": " https://rseng.github.io/software/repository/github/smoh/kinesis",
-	"content": "kinematic modelling of clusters with gaia"
+	"github/savage13/sacio": {
+	"id": "github/savage13/sacio",
+	"title": "github/savage13/sacio",
+	"url": " https://rseng.github.io/software/repository/github/savage13/sacio",
+	"content": "sacio library"
 	},
-	"github/LLNL/echemfem": {
-	"id": "github/LLNL/echemfem",
-	"title": "github/LLNL/echemfem",
-	"url": " https://rseng.github.io/software/repository/github/LLNL/echemfem",
-	"content": "Finite Element Method for Electrochemical Transport (EchemFEM)"
+	"github/xstarkit/mpi_xstar": {
+	"id": "github/xstarkit/mpi_xstar",
+	"title": "github/xstarkit/mpi_xstar",
+	"url": " https://rseng.github.io/software/repository/github/xstarkit/mpi_xstar",
+	"content": "MPI_XSTAR - MPI-based Parallelization of XSTAR Photoionization Program"
 	},
-	"github/LiShuTJ/NDNet": {
-	"id": "github/LiShuTJ/NDNet",
-	"title": "github/LiShuTJ/NDNet",
-	"url": " https://rseng.github.io/software/repository/github/LiShuTJ/NDNet",
-	"content": "None"
+	"github/privong/pyMCspearman": {
+	"id": "github/privong/pyMCspearman",
+	"title": "github/privong/pyMCspearman",
+	"url": " https://rseng.github.io/software/repository/github/privong/pyMCspearman",
+	"content": "Monte carlo calculation of Spearman&#39;s rank correlation coefficient with uncertainties. Following Curran (2014)"
 	},
-	"github/imperialchem/mrd-demo": {
-	"id": "github/imperialchem/mrd-demo",
-	"title": "github/imperialchem/mrd-demo",
-	"url": " https://rseng.github.io/software/repository/github/imperialchem/mrd-demo",
-	"content": "Demonstration of classical molecular reaction dynamics for a tri-atomic system"
+	"github/privong/pymccorrelation": {
+	"id": "github/privong/pymccorrelation",
+	"title": "github/privong/pymccorrelation",
+	"url": " https://rseng.github.io/software/repository/github/privong/pymccorrelation",
+	"content": "Correlation coefficients with uncertainties"
 	},
-	"github/MaayanLab/signature-commons-ui": {
-	"id": "github/MaayanLab/signature-commons-ui",
-	"title": "github/MaayanLab/signature-commons-ui",
-	"url": " https://rseng.github.io/software/repository/github/MaayanLab/signature-commons-ui",
-	"content": "A front-end UI for demoing API integration"
+	"github/lzkelley/kalepy": {
+	"id": "github/lzkelley/kalepy",
+	"title": "github/lzkelley/kalepy",
+	"url": " https://rseng.github.io/software/repository/github/lzkelley/kalepy",
+	"content": "Kernel Density Estimation and (re)sampling"
 	},
-	"github/HHTpy/HHTpywrapper": {
-	"id": "github/HHTpy/HHTpywrapper",
-	"title": "github/HHTpy/HHTpywrapper",
-	"url": " https://rseng.github.io/software/repository/github/HHTpy/HHTpywrapper",
-	"content": "Python Wrapper for Hilbert–Huang Transform MATLAB Package"
+	"github/HUST-DataMan/FRMC": {
+	"id": "github/HUST-DataMan/FRMC",
+	"title": "github/HUST-DataMan/FRMC",
+	"url": " https://rseng.github.io/software/repository/github/HUST-DataMan/FRMC",
+	"content": "FRMC is a fast and robust imputation software for single cell RNA-Seq data."
 	},
-	"github/YesselmanLab/rna_map": {
-	"id": "github/YesselmanLab/rna_map",
-	"title": "github/YesselmanLab/rna_map",
-	"url": " https://rseng.github.io/software/repository/github/YesselmanLab/rna_map",
-	"content": "tools to do mutational profiling (MaP) analysis for RNA chemical mapping experiments."
+	"github/MIAnalyzer/MIA": {
+	"id": "github/MIAnalyzer/MIA",
+	"title": "github/MIAnalyzer/MIA",
+	"url": " https://rseng.github.io/software/repository/github/MIAnalyzer/MIA",
+	"content": "Microsopic Image Analyzer (MIA)"
 	},
-	"github/matiscke/lcps": {
-	"id": "github/matiscke/lcps",
-	"title": "github/matiscke/lcps",
-	"url": " https://rseng.github.io/software/repository/github/matiscke/lcps",
-	"content": "A tool for pre-selecting light curves with possible transit signatures"
+	"github/jjmccollum/teiphy": {
+	"id": "github/jjmccollum/teiphy",
+	"title": "github/jjmccollum/teiphy",
+	"url": " https://rseng.github.io/software/repository/github/jjmccollum/teiphy",
+	"content": "A Python package for converting TEI XML collations to NEXUS and other formats"
 	},
-	"github/roban/CosmoloPy": {
-	"id": "github/roban/CosmoloPy",
-	"title": "github/roban/CosmoloPy",
-	"url": " https://rseng.github.io/software/repository/github/roban/CosmoloPy",
-	"content": "a basic numpy/scipy-based cosmology package for python"
+	"github/devitocodes/pyrevolve": {
+	"id": "github/devitocodes/pyrevolve",
+	"title": "github/devitocodes/pyrevolve",
+	"url": " https://rseng.github.io/software/repository/github/devitocodes/pyrevolve",
+	"content": "Python library to manage checkpointing for adjoints"
 	},
-	"github/fccoelho/epigrass": {
-	"id": "github/fccoelho/epigrass",
-	"title": "github/fccoelho/epigrass",
-	"url": " https://rseng.github.io/software/repository/github/fccoelho/epigrass",
-	"content": "Epidemiological Geo-referenced Analysis and Simulation system"
+	"github/devitocodes/devito": {
+	"id": "github/devitocodes/devito",
+	"title": "github/devitocodes/devito",
+	"url": " https://rseng.github.io/software/repository/github/devitocodes/devito",
+	"content": "Code generation framework for automated finite difference computation"
 	},
-	"github/fccoelho/epimodels": {
-	"id": "github/fccoelho/epimodels",
-	"title": "github/fccoelho/epimodels",
-	"url": " https://rseng.github.io/software/repository/github/fccoelho/epimodels",
-	"content": "Library for simulation with mathematical epidemiology models"
+	"github/MoreiraLAB/mensadb-open": {
+	"id": "github/MoreiraLAB/mensadb-open",
+	"title": "github/MoreiraLAB/mensadb-open",
+	"url": " https://rseng.github.io/software/repository/github/MoreiraLAB/mensadb-open",
+	"content": "None"
 	},
-	"github/PetervanLunteren/EcoAssist": {
-	"id": "github/PetervanLunteren/EcoAssist",
-	"title": "github/PetervanLunteren/EcoAssist",
-	"url": " https://rseng.github.io/software/repository/github/PetervanLunteren/EcoAssist",
-	"content": "Train and deploy custom YOLOv5 species classifiers for camera trap images based around the MegaDetector model"
+	"github/MoreiraLAB/or": {
+	"id": "github/MoreiraLAB/or",
+	"title": "github/MoreiraLAB/or",
+	"url": " https://rseng.github.io/software/repository/github/MoreiraLAB/or",
+	"content": "Opiod Receptor Partners analysis code"
 	},
-	"github/cthoyt/bel-resources": {
-	"id": "github/cthoyt/bel-resources",
-	"title": "github/cthoyt/bel-resources",
-	"url": " https://rseng.github.io/software/repository/github/cthoyt/bel-resources",
-	"content": "Utilities for BEL resource files."
+	"github/logan-pearce/lofti_gaia": {
+	"id": "github/logan-pearce/lofti_gaia",
+	"title": "github/logan-pearce/lofti_gaia",
+	"url": " https://rseng.github.io/software/repository/github/logan-pearce/lofti_gaia",
+	"content": "Python package for orbit fitting with Gaia astrometry"
 	},
-	"github/jonbmartin/pulpy": {
-	"id": "github/jonbmartin/pulpy",
-	"title": "github/jonbmartin/pulpy",
-	"url": " https://rseng.github.io/software/repository/github/jonbmartin/pulpy",
-	"content": "Pulses in Python"
+	"github/EpistasisLab/tpot": {
+	"id": "github/EpistasisLab/tpot",
+	"title": "github/EpistasisLab/tpot",
+	"url": " https://rseng.github.io/software/repository/github/EpistasisLab/tpot",
+	"content": "A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming."
 	},
-	"github/drcandacemakedamoore/cleanX": {
-	"id": "github/drcandacemakedamoore/cleanX",
-	"title": "github/drcandacemakedamoore/cleanX",
-	"url": " https://rseng.github.io/software/repository/github/drcandacemakedamoore/cleanX",
-	"content": "Python library for exploring, cleaning, normalizing, and augmenting large datasets of radiological data."
+	"github/EpistasisLab/regens": {
+	"id": "github/EpistasisLab/regens",
+	"title": "github/EpistasisLab/regens",
+	"url": " https://rseng.github.io/software/repository/github/EpistasisLab/regens",
+	"content": "Recombines real genomic segments to simulate whole genomes"
 	},
-	"github/SteveMacenski/slam_toolbox": {
-	"id": "github/SteveMacenski/slam_toolbox",
-	"title": "github/SteveMacenski/slam_toolbox",
-	"url": " https://rseng.github.io/software/repository/github/SteveMacenski/slam_toolbox",
-	"content": "Slam Toolbox for lifelong mapping and localization in potentially massive maps with ROS"
+	"github/reedacartwright/ngila": {
+	"id": "github/reedacartwright/ngila",
+	"title": "github/reedacartwright/ngila",
+	"url": " https://rseng.github.io/software/repository/github/reedacartwright/ngila",
+	"content": "Ngila is a global alignment program that can align pairs of sequences using   logarithmic and affine gap penalties."
 	},
-	"github/RAMP-project/RAMP": {
-	"id": "github/RAMP-project/RAMP",
-	"title": "github/RAMP-project/RAMP",
-	"url": " https://rseng.github.io/software/repository/github/RAMP-project/RAMP",
-	"content": "Repository of the open-source RAMP model for generating multi-energy loads profiles"
+	"github/reedacartwright/dawg": {
+	"id": "github/reedacartwright/dawg",
+	"title": "github/reedacartwright/dawg",
+	"url": " https://rseng.github.io/software/repository/github/reedacartwright/dawg",
+	"content": "Simulating Sequence Evolution"
 	},
-	"github/HLasse/TextDescriptives": {
-	"id": "github/HLasse/TextDescriptives",
-	"title": "github/HLasse/TextDescriptives",
-	"url": " https://rseng.github.io/software/repository/github/HLasse/TextDescriptives",
-	"content": "A Python library for calculating a large variety of metrics from text"
+	"github/RETURN-project/BenchmarkRecovery": {
+	"id": "github/RETURN-project/BenchmarkRecovery",
+	"title": "github/RETURN-project/BenchmarkRecovery",
+	"url": " https://rseng.github.io/software/repository/github/RETURN-project/BenchmarkRecovery",
+	"content": "Benchmarking recovery indicators from remote sensing time series"
 	},
-	"github/djgroen/MPWide": {
-	"id": "github/djgroen/MPWide",
-	"title": "github/djgroen/MPWide",
-	"url": " https://rseng.github.io/software/repository/github/djgroen/MPWide",
-	"content": "MPWide is a communication library for message passing across wide area networks."
+	"github/cistib/origami": {
+	"id": "github/cistib/origami",
+	"title": "github/cistib/origami",
+	"url": " https://rseng.github.io/software/repository/github/cistib/origami",
+	"content": "MATLAB-based image analysis pipeline for extracting single-cell direction-variant shape features from fluorescence images of folding epithelial sheets."
 	},
-	"github/RoelofBerg/limereg": {
-	"id": "github/RoelofBerg/limereg",
-	"title": "github/RoelofBerg/limereg",
-	"url": " https://rseng.github.io/software/repository/github/RoelofBerg/limereg",
-	"content": "Lightweight, derivative based, rigid, 2D Image Registration"
+	"github/nservant/HiC-Pro": {
+	"id": "github/nservant/HiC-Pro",
+	"title": "github/nservant/HiC-Pro",
+	"url": " https://rseng.github.io/software/repository/github/nservant/HiC-Pro",
+	"content": "HiC-Pro: An optimized and flexible pipeline for Hi-C data processing"
 	},
-	"github/brentp/cigar": {
-	"id": "github/brentp/cigar",
-	"title": "github/brentp/cigar",
-	"url": " https://rseng.github.io/software/repository/github/brentp/cigar",
-	"content": "simple library for dealing with SAM cigar strings"
+	"github/aineniamh/snipit": {
+	"id": "github/aineniamh/snipit",
+	"title": "github/aineniamh/snipit",
+	"url": " https://rseng.github.io/software/repository/github/aineniamh/snipit",
+	"content": "snipit: summarise snps relative to your reference sequence"
 	},
-	"github/brentp/cyvcf2": {
-	"id": "github/brentp/cyvcf2",
-	"title": "github/brentp/cyvcf2",
-	"url": " https://rseng.github.io/software/repository/github/brentp/cyvcf2",
-	"content": "a cython wrapper around htslib built for fast parsing of Variant Call Format (VCF) files."
+	"github/rickhelmus/patRoon": {
+	"id": "github/rickhelmus/patRoon",
+	"title": "github/rickhelmus/patRoon",
+	"url": " https://rseng.github.io/software/repository/github/rickhelmus/patRoon",
+	"content": "Workflow solutions for mass-spectrometry based non-target analysis."
 	},
-	"github/brentp/hts-nim-tools": {
-	"id": "github/brentp/hts-nim-tools",
-	"title": "github/brentp/hts-nim-tools",
-	"url": " https://rseng.github.io/software/repository/github/brentp/hts-nim-tools",
-	"content": "useful command-line tools written to showcase hts-nim"
+	"github/bareid/cosmoxi2d": {
+	"id": "github/bareid/cosmoxi2d",
+	"title": "github/bareid/cosmoxi2d",
+	"url": " https://rseng.github.io/software/repository/github/bareid/cosmoxi2d",
+	"content": "Evaluates the theoretical prediction for correlation function multipoles based on perturbation theory evaluation of the input real space clustering and velocity statistics to the Gaussian streaming model."
 	},
-	"github/brentp/somalier": {
-	"id": "github/brentp/somalier",
-	"title": "github/brentp/somalier",
-	"url": " https://rseng.github.io/software/repository/github/brentp/somalier",
-	"content": "fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... &#34;like damn that is one smart wine guy&#34;"
+	"github/scottleedavis/googleearthtoolbox": {
+	"id": "github/scottleedavis/googleearthtoolbox",
+	"title": "github/scottleedavis/googleearthtoolbox",
+	"url": " https://rseng.github.io/software/repository/github/scottleedavis/googleearthtoolbox",
+	"content": "Leverages the intuitive interactive virtual globe interface provided by Google Earth, providing programatic tools useful in spatio-temporal analysis."
 	},
-	"github/brentp/smoove": {
-	"id": "github/brentp/smoove",
-	"title": "github/brentp/smoove",
-	"url": " https://rseng.github.io/software/repository/github/brentp/smoove",
-	"content": "structural variant calling and genotyping with existing tools, but, smoothly."
+	"github/bacpop/PopPUNK": {
+	"id": "github/bacpop/PopPUNK",
+	"title": "github/bacpop/PopPUNK",
+	"url": " https://rseng.github.io/software/repository/github/bacpop/PopPUNK",
+	"content": "PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)"
 	},
-	"github/brentp/nim-lapper": {
-	"id": "github/brentp/nim-lapper",
-	"title": "github/brentp/nim-lapper",
-	"url": " https://rseng.github.io/software/repository/github/brentp/nim-lapper",
-	"content": "fast easy interval overlapping for nim-lang"
+	"github/bacpop/ska.rust": {
+	"id": "github/bacpop/ska.rust",
+	"title": "github/bacpop/ska.rust",
+	"url": " https://rseng.github.io/software/repository/github/bacpop/ska.rust",
+	"content": "Split k-mer analysis – version 2"
 	},
-	"github/brentp/goleft": {
-	"id": "github/brentp/goleft",
-	"title": "github/brentp/goleft",
-	"url": " https://rseng.github.io/software/repository/github/brentp/goleft",
-	"content": "goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary"
+	"github/ishinder/EASTR": {
+	"id": "github/ishinder/EASTR",
+	"title": "github/ishinder/EASTR",
+	"url": " https://rseng.github.io/software/repository/github/ishinder/EASTR",
+	"content": "Emending Alignment of Spliced Transcript Reads"
 	},
-	"github/brentp/gsort": {
-	"id": "github/brentp/gsort",
-	"title": "github/brentp/gsort",
-	"url": " https://rseng.github.io/software/repository/github/brentp/gsort",
-	"content": "sort genomic data"
+	"github/nci/scores": {
+	"id": "github/nci/scores",
+	"title": "github/nci/scores",
+	"url": " https://rseng.github.io/software/repository/github/nci/scores",
+	"content": "Metrics for the verification, evaluation and optimisation of forecasts, predictions or models."
 	},
-	"github/brentp/mosdepth": {
-	"id": "github/brentp/mosdepth",
-	"title": "github/brentp/mosdepth",
-	"url": " https://rseng.github.io/software/repository/github/brentp/mosdepth",
-	"content": "fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing"
+	"github/MedMaxLab/selfEEG": {
+	"id": "github/MedMaxLab/selfEEG",
+	"title": "github/MedMaxLab/selfEEG",
+	"url": " https://rseng.github.io/software/repository/github/MedMaxLab/selfEEG",
+	"content": "selfEEG: a Python library for Self-Supervised Learning on Electroencephalography (EEG) data"
+	},
+	"github/nebblu/ReACT": {
+	"id": "github/nebblu/ReACT",
+	"title": "github/nebblu/ReACT",
+	"url": " https://rseng.github.io/software/repository/github/nebblu/ReACT",
+	"content": "ReACT public repo"
 	},
-	"github/brentp/geneimpacts": {
-	"id": "github/brentp/geneimpacts",
-	"title": "github/brentp/geneimpacts",
-	"url": " https://rseng.github.io/software/repository/github/brentp/geneimpacts",
-	"content": "prioritize effects of variant annotations from VEP, SnpEff, et al."
+	"github/Shamir-Lab/domino_web": {
+	"id": "github/Shamir-Lab/domino_web",
+	"title": "github/Shamir-Lab/domino_web",
+	"url": " https://rseng.github.io/software/repository/github/Shamir-Lab/domino_web",
+	"content": "None"
 	},
-	"github/brentp/kexpr-nim": {
-	"id": "github/brentp/kexpr-nim",
-	"title": "github/brentp/kexpr-nim",
-	"url": " https://rseng.github.io/software/repository/github/brentp/kexpr-nim",
-	"content": "nim wrapper for Heng Li&#39;s kexpr math expression evaluator library"
+	"github/lnscan/mitoSplitter": {
+	"id": "github/lnscan/mitoSplitter",
+	"title": "github/lnscan/mitoSplitter",
+	"url": " https://rseng.github.io/software/repository/github/lnscan/mitoSplitter",
+	"content": "None"
 	},
-	"github/brentp/peddy": {
-	"id": "github/brentp/peddy",
-	"title": "github/brentp/peddy",
-	"url": " https://rseng.github.io/software/repository/github/brentp/peddy",
-	"content": "genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF"
+	"github/DMGW-Goethe/imripy": {
+	"id": "github/DMGW-Goethe/imripy",
+	"title": "github/DMGW-Goethe/imripy",
+	"url": " https://rseng.github.io/software/repository/github/DMGW-Goethe/imripy",
+	"content": "A python code able to simulate Intermediate Mass Ratio Inspirals (IMRI)"
 	},
-	"github/brentp/vcfanno": {
-	"id": "github/brentp/vcfanno",
-	"title": "github/brentp/vcfanno",
-	"url": " https://rseng.github.io/software/repository/github/brentp/vcfanno",
-	"content": "annotate a VCF with other VCFs/BEDs/tabixed files "
+	"github/davidharvey1986/pyRRG": {
+	"id": "github/davidharvey1986/pyRRG",
+	"title": "github/davidharvey1986/pyRRG",
+	"url": " https://rseng.github.io/software/repository/github/davidharvey1986/pyRRG",
+	"content": "pyRRG weak lensing shape measurement code. Measuring the 2nd and 4th order moments it uses a TinyTim model to correct for PSF distortions. It is invariant to number exposures, ortientation of the drizzle images. Using a machine learning algorithm it automatically star and galaxy classifies, howeve the user is able to do this manually if not accurate enough. For more see https://arxiv.org/abs/astro-ph/9905090. For bugs please report them to https://github.com/davidharvey1986/pyRRG or contact harvey@lorentz.leidenuniv.nl"
 	},
-	"github/ekg/seqwish": {
-	"id": "github/ekg/seqwish",
-	"title": "github/ekg/seqwish",
-	"url": " https://rseng.github.io/software/repository/github/ekg/seqwish",
-	"content": "alignment to variation graph inducer"
+	"github/MrOlm/drep": {
+	"id": "github/MrOlm/drep",
+	"title": "github/MrOlm/drep",
+	"url": " https://rseng.github.io/software/repository/github/MrOlm/drep",
+	"content": "a python program for rapidly comparing large numbers of genomes, dRep can also &#34;de-replicate&#34; a genome set by identifying groups of highly similar genomes and choosing the best representative genome for each genome set."
 	},
-	"github/ekg/smithwaterman": {
-	"id": "github/ekg/smithwaterman",
-	"title": "github/ekg/smithwaterman",
-	"url": " https://rseng.github.io/software/repository/github/ekg/smithwaterman",
-	"content": "smith-waterman-gotoh alignment algorithm"
+	"github/matthiasdemuzere/w2w": {
+	"id": "github/matthiasdemuzere/w2w",
+	"title": "github/matthiasdemuzere/w2w",
+	"url": " https://rseng.github.io/software/repository/github/matthiasdemuzere/w2w",
+	"content": "A python tool that ingests WUDAPT information into WRF."
 	},
-	"github/ekg/tabixpp": {
-	"id": "github/ekg/tabixpp",
-	"title": "github/ekg/tabixpp",
-	"url": " https://rseng.github.io/software/repository/github/ekg/tabixpp",
-	"content": "C++ wrapper to tabix indexer"
+	"github/JLBLine/PUMA": {
+	"id": "github/JLBLine/PUMA",
+	"title": "github/JLBLine/PUMA",
+	"url": " https://rseng.github.io/software/repository/github/JLBLine/PUMA",
+	"content": "None"
 	},
-	"github/ekg/fastahack": {
-	"id": "github/ekg/fastahack",
-	"title": "github/ekg/fastahack",
-	"url": " https://rseng.github.io/software/repository/github/ekg/fastahack",
-	"content": "utilities for indexing and sequence extraction from FASTA files"
+	"github/JLBLine/WODEN": {
+	"id": "github/JLBLine/WODEN",
+	"title": "github/JLBLine/WODEN",
+	"url": " https://rseng.github.io/software/repository/github/JLBLine/WODEN",
+	"content": "CUDA code designed to simulate interferometric data using point, Gaussian, and shapelet sky models"
 	},
-	"github/ekg/freebayes": {
-	"id": "github/ekg/freebayes",
-	"title": "github/ekg/freebayes",
-	"url": " https://rseng.github.io/software/repository/github/ekg/freebayes",
-	"content": "Bayesian haplotype-based genetic polymorphism discovery and genotyping."
+	"github/yair111/AnalyticLC": {
+	"id": "github/yair111/AnalyticLC",
+	"title": "github/yair111/AnalyticLC",
+	"url": " https://rseng.github.io/software/repository/github/yair111/AnalyticLC",
+	"content": "None"
 	},
-	"github/Sarc-Graph/sarcgraph": {
-	"id": "github/Sarc-Graph/sarcgraph",
-	"title": "github/Sarc-Graph/sarcgraph",
-	"url": " https://rseng.github.io/software/repository/github/Sarc-Graph/sarcgraph",
+	"github/fairtracks/omnipy_examples": {
+	"id": "github/fairtracks/omnipy_examples",
+	"title": "github/fairtracks/omnipy_examples",
+	"url": " https://rseng.github.io/software/repository/github/fairtracks/omnipy_examples",
 	"content": "None"
 	},
-	"github/AStcherbinine/omegapy": {
-	"id": "github/AStcherbinine/omegapy",
-	"title": "github/AStcherbinine/omegapy",
-	"url": " https://rseng.github.io/software/repository/github/AStcherbinine/omegapy",
-	"content": "Python tools for OMEGA/MEx observation data (importation/correction/display)."
+	"github/mostanes/umbrella2": {
+	"id": "github/mostanes/umbrella2",
+	"title": "github/mostanes/umbrella2",
+	"url": " https://rseng.github.io/software/repository/github/mostanes/umbrella2",
+	"content": "Highly modular open-source asteroid detection library written under dotnet."
 	},
-	"github/andr1976/HydDown": {
-	"id": "github/andr1976/HydDown",
-	"title": "github/andr1976/HydDown",
-	"url": " https://rseng.github.io/software/repository/github/andr1976/HydDown",
-	"content": "Hydrogen (or other pure gas phase species) depressurization calculations"
+	"github/baiyueh/PANINIpy": {
+	"id": "github/baiyueh/PANINIpy",
+	"title": "github/baiyueh/PANINIpy",
+	"url": " https://rseng.github.io/software/repository/github/baiyueh/PANINIpy",
+	"content": "PANINIpy: Package of Algorithms for Nonparametric Inference with Networks in Python"
 	},
-	"github/babinyurii/recan": {
-	"id": "github/babinyurii/recan",
-	"title": "github/babinyurii/recan",
-	"url": " https://rseng.github.io/software/repository/github/babinyurii/recan",
-	"content": "genetic distance plotting for recombination events analysis"
+	"github/AstroAccelerateOrg/astro-accelerate": {
+	"id": "github/AstroAccelerateOrg/astro-accelerate",
+	"title": "github/AstroAccelerateOrg/astro-accelerate",
+	"url": " https://rseng.github.io/software/repository/github/AstroAccelerateOrg/astro-accelerate",
+	"content": "AstroAccelerate is a many-core accelerated software package for processing time-domain radio-astronomy data."
 	},
-	"github/starkit/wsynphot": {
-	"id": "github/starkit/wsynphot",
-	"title": "github/starkit/wsynphot",
-	"url": " https://rseng.github.io/software/repository/github/starkit/wsynphot",
-	"content": "Synthetic Photometry package using Quantities"
+	"github/grant-m-s/astronomicAL": {
+	"id": "github/grant-m-s/astronomicAL",
+	"title": "github/grant-m-s/astronomicAL",
+	"url": " https://rseng.github.io/software/repository/github/grant-m-s/astronomicAL",
+	"content": "An interactive dashboard for visualisation, integration and classification of data using Active Learning."
 	},
-	"github/lysovosyl/NanoDeep": {
-	"id": "github/lysovosyl/NanoDeep",
-	"title": "github/lysovosyl/NanoDeep",
-	"url": " https://rseng.github.io/software/repository/github/lysovosyl/NanoDeep",
-	"content": "None"
+	"github/GabrielaCR/AGNfitter": {
+	"id": "github/GabrielaCR/AGNfitter",
+	"title": "github/GabrielaCR/AGNfitter",
+	"url": " https://rseng.github.io/software/repository/github/GabrielaCR/AGNfitter",
+	"content": "SED-fitting code for AGN and galaxies from a MCMC approach"
 	},
-	"github/reznik-lab/MIRTH": {
-	"id": "github/reznik-lab/MIRTH",
-	"title": "github/reznik-lab/MIRTH",
-	"url": " https://rseng.github.io/software/repository/github/reznik-lab/MIRTH",
-	"content": "Metabolite Imputation via Rank Transformation and Harmonization"
+	"github/pydata/xarray": {
+	"id": "github/pydata/xarray",
+	"title": "github/pydata/xarray",
+	"url": " https://rseng.github.io/software/repository/github/pydata/xarray",
+	"content": "N-D labeled arrays and datasets in Python"
 	},
-	"github/UBC-Astrophysics/kd-match": {
-	"id": "github/UBC-Astrophysics/kd-match",
-	"title": "github/UBC-Astrophysics/kd-match",
-	"url": " https://rseng.github.io/software/repository/github/UBC-Astrophysics/kd-match",
-	"content": "Rapidly matches stellar catalogues"
+	"github/RichardMoot/GrailLight": {
+	"id": "github/RichardMoot/GrailLight",
+	"title": "github/RichardMoot/GrailLight",
+	"url": " https://rseng.github.io/software/repository/github/RichardMoot/GrailLight",
+	"content": "Light-weight chart parser for multimodal type-logical grammars"
 	},
-	"github/CNIC-Proteomics/TurboPutative-web": {
-	"id": "github/CNIC-Proteomics/TurboPutative-web",
-	"title": "github/CNIC-Proteomics/TurboPutative-web",
-	"url": " https://rseng.github.io/software/repository/github/CNIC-Proteomics/TurboPutative-web",
-	"content": "None"
+	"github/RichardMoot/LinearOne": {
+	"id": "github/RichardMoot/LinearOne",
+	"title": "github/RichardMoot/LinearOne",
+	"url": " https://rseng.github.io/software/repository/github/RichardMoot/LinearOne",
+	"content": "LinearOne is a prototype theorem prover for first-order (multiplicative, intuitionistic) linear logic."
 	},
-	"github/fhcrc/seqmagick": {
-	"id": "github/fhcrc/seqmagick",
-	"title": "github/fhcrc/seqmagick",
-	"url": " https://rseng.github.io/software/repository/github/fhcrc/seqmagick",
-	"content": "An imagemagick-like frontend to Biopython SeqIO"
+	"github/simd-everywhere/simde": {
+	"id": "github/simd-everywhere/simde",
+	"title": "github/simd-everywhere/simde",
+	"url": " https://rseng.github.io/software/repository/github/simd-everywhere/simde",
+	"content": "Implementations of SIMD instruction sets for systems which don&#39;t natively support them."
 	},
-	"github/ulebreui/shark": {
-	"id": "github/ulebreui/shark",
-	"title": "github/ulebreui/shark",
-	"url": " https://rseng.github.io/software/repository/github/ulebreui/shark",
-	"content": "This is the public repository of the shark code (Lebreuilly et al., 2023)"
+	"github/pelican/pelican": {
+	"id": "github/pelican/pelican",
+	"title": "github/pelican/pelican",
+	"url": " https://rseng.github.io/software/repository/github/pelican/pelican",
+	"content": "Pipeline for Extensible Lightweight Imaging and CAlibratioN"
 	},
-	"github/InfOmics/PanDelos-frags": {
-	"id": "github/InfOmics/PanDelos-frags",
-	"title": "github/InfOmics/PanDelos-frags",
-	"url": " https://rseng.github.io/software/repository/github/InfOmics/PanDelos-frags",
-	"content": "A version of PanDelos that discovers pangenomic content in fragmented genomes"
+	"github/institut-de-genomique/HAPO-G": {
+	"id": "github/institut-de-genomique/HAPO-G",
+	"title": "github/institut-de-genomique/HAPO-G",
+	"url": " https://rseng.github.io/software/repository/github/institut-de-genomique/HAPO-G",
+	"content": "Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads."
 	},
-	"github/meinardmueller/synctoolbox": {
-	"id": "github/meinardmueller/synctoolbox",
-	"title": "github/meinardmueller/synctoolbox",
-	"url": " https://rseng.github.io/software/repository/github/meinardmueller/synctoolbox",
-	"content": "Sync Toolbox - Python package with reference implementations for efficient, robust, and accurate music synchronization based on dynamic time warping (DTW)"
+	"github/isce-framework/dolphin": {
+	"id": "github/isce-framework/dolphin",
+	"title": "github/isce-framework/dolphin",
+	"url": " https://rseng.github.io/software/repository/github/isce-framework/dolphin",
+	"content": "InSAR phase linking library for PS/DS processing"
 	},
-	"github/meinardmueller/libfmp": {
-	"id": "github/meinardmueller/libfmp",
-	"title": "github/meinardmueller/libfmp",
-	"url": " https://rseng.github.io/software/repository/github/meinardmueller/libfmp",
+	"github/rinikerlab/Ensembler": {
+	"id": "github/rinikerlab/Ensembler",
+	"title": "github/rinikerlab/Ensembler",
+	"url": " https://rseng.github.io/software/repository/github/rinikerlab/Ensembler",
 	"content": "None"
 	},
-	"github/yyZhang14/dbEssLnc": {
-	"id": "github/yyZhang14/dbEssLnc",
-	"title": "github/yyZhang14/dbEssLnc",
-	"url": " https://rseng.github.io/software/repository/github/yyZhang14/dbEssLnc",
-	"content": "a Vue.js project"
+	"github/meenakshi-kushwaha/mmaqshiny": {
+	"id": "github/meenakshi-kushwaha/mmaqshiny",
+	"title": "github/meenakshi-kushwaha/mmaqshiny",
+	"url": " https://rseng.github.io/software/repository/github/meenakshi-kushwaha/mmaqshiny",
+	"content": "R-Shiny package to explore Air-Pollution Mobile Monitoring data "
 	},
-	"github/jumphone/inferloop": {
-	"id": "github/jumphone/inferloop",
-	"title": "github/jumphone/inferloop",
-	"url": " https://rseng.github.io/software/repository/github/jumphone/inferloop",
-	"content": "InferLoop: leveraging single-cell chromatin accessibility for the signal of chromatin loop"
+	"github/MolMeDB/MolMeDB": {
+	"id": "github/MolMeDB/MolMeDB",
+	"title": "github/MolMeDB/MolMeDB",
+	"url": " https://rseng.github.io/software/repository/github/MolMeDB/MolMeDB",
+	"content": "MolMeDB is an open chemistry database about interactions of molecules with membranes."
 	},
-	"github/Starlink/hds-v5": {
-	"id": "github/Starlink/hds-v5",
-	"title": "github/Starlink/hds-v5",
-	"url": " https://rseng.github.io/software/repository/github/Starlink/hds-v5",
-	"content": "HDS API implemented using HDF5"
+	"github/jianhuupenn/SpaGCN": {
+	"id": "github/jianhuupenn/SpaGCN",
+	"title": "github/jianhuupenn/SpaGCN",
+	"url": " https://rseng.github.io/software/repository/github/jianhuupenn/SpaGCN",
+	"content": "SpaGCN: Integrating gene expression, spatial location and histology to identify spatial domains and spatially variable genes by graph convolutional network"
 	},
-	"github/Starlink/ORAC-DR": {
-	"id": "github/Starlink/ORAC-DR",
-	"title": "github/Starlink/ORAC-DR",
-	"url": " https://rseng.github.io/software/repository/github/Starlink/ORAC-DR",
-	"content": "The ORAC-DR astronomy data reduction pipeline"
+	"github/rribeiro-sci/pygomodo": {
+	"id": "github/rribeiro-sci/pygomodo",
+	"title": "github/rribeiro-sci/pygomodo",
+	"url": " https://rseng.github.io/software/repository/github/rribeiro-sci/pygomodo",
+	"content": "GPCRs modeling and docking with python"
 	},
-	"github/Starlink/perl-Starlink-Autoastrom": {
-	"id": "github/Starlink/perl-Starlink-Autoastrom",
-	"title": "github/Starlink/perl-Starlink-Autoastrom",
-	"url": " https://rseng.github.io/software/repository/github/Starlink/perl-Starlink-Autoastrom",
-	"content": "Starlink Auto astrometry software"
+	"github/FridleyLab/spatialGE": {
+	"id": "github/FridleyLab/spatialGE",
+	"title": "github/FridleyLab/spatialGE",
+	"url": " https://rseng.github.io/software/repository/github/FridleyLab/spatialGE",
+	"content": "Methods for visualization and analysis of spatially-resolved gene expression"
 	},
-	"github/Starlink/aspic": {
-	"id": "github/Starlink/aspic",
-	"title": "github/Starlink/aspic",
-	"url": " https://rseng.github.io/software/repository/github/Starlink/aspic",
-	"content": "Starlink Image processing programs from the 1980s"
+	"github/FluidityProject/fluidity": {
+	"id": "github/FluidityProject/fluidity",
+	"title": "github/FluidityProject/fluidity",
+	"url": " https://rseng.github.io/software/repository/github/FluidityProject/fluidity",
+	"content": "Fluidity"
 	},
-	"github/Starlink/palpy": {
-	"id": "github/Starlink/palpy",
-	"title": "github/Starlink/palpy",
-	"url": " https://rseng.github.io/software/repository/github/Starlink/palpy",
-	"content": "Python interface to the PAL positional astronomy library"
+	"github/BackmanLab/PWSpy": {
+	"id": "github/BackmanLab/PWSpy",
+	"title": "github/BackmanLab/PWSpy",
+	"url": " https://rseng.github.io/software/repository/github/BackmanLab/PWSpy",
+	"content": "A Python library dedicated to the analysis of Partial Wave Microscopy (PWS) data."
 	},
-	"github/Starlink/pal": {
-	"id": "github/Starlink/pal",
-	"title": "github/Starlink/pal",
-	"url": " https://rseng.github.io/software/repository/github/Starlink/pal",
-	"content": "Positional Astronomy Library"
+	"github/MehrnooshTahani/MappingBLOS_MolecularClouds": {
+	"id": "github/MehrnooshTahani/MappingBLOS_MolecularClouds",
+	"title": "github/MehrnooshTahani/MappingBLOS_MolecularClouds",
+	"url": " https://rseng.github.io/software/repository/github/MehrnooshTahani/MappingBLOS_MolecularClouds",
+	"content": "Software to determine line of sight magnetic fields of molecular clouds (Tahani et al. 2018)"
 	},
-	"github/Starlink/starlink": {
-	"id": "github/Starlink/starlink",
-	"title": "github/Starlink/starlink",
-	"url": " https://rseng.github.io/software/repository/github/Starlink/starlink",
-	"content": "Starlink Software Collection"
+	"github/ArisTr/PyRaTE": {
+	"id": "github/ArisTr/PyRaTE",
+	"title": "github/ArisTr/PyRaTE",
+	"url": " https://rseng.github.io/software/repository/github/ArisTr/PyRaTE",
+	"content": "Python Radiative Transfer Emission Code"
 	},
-	"github/Starlink/starjava": {
-	"id": "github/Starlink/starjava",
-	"title": "github/Starlink/starjava",
-	"url": " https://rseng.github.io/software/repository/github/Starlink/starjava",
-	"content": "Java applications initially developed for the Starlink Project but now developed independently"
+	"github/TommyJones/tidylda": {
+	"id": "github/TommyJones/tidylda",
+	"title": "github/TommyJones/tidylda",
+	"url": " https://rseng.github.io/software/repository/github/TommyJones/tidylda",
+	"content": "Implements an algorithim for Latent Dirichlet Allocation using style conventions from the [tidyverse](https://style.tidyverse.org/) and [tidymodels](https://tidymodels.github.io/model-implementation-principles/index.html). "
 	},
-	"github/agerada/AIgarMIC": {
-	"id": "github/agerada/AIgarMIC",
-	"title": "github/agerada/AIgarMIC",
-	"url": " https://rseng.github.io/software/repository/github/agerada/AIgarMIC",
-	"content": "AIgarMIC – machine-learning assisted agar dilution software"
+	"github/martenlourens/SHARC": {
+	"id": "github/martenlourens/SHARC",
+	"title": "github/martenlourens/SHARC",
+	"url": " https://rseng.github.io/software/repository/github/martenlourens/SHARC",
+	"content": "A Python library for performing local gradient clustering (LGC) based SHArpened dimensionality Reduction (SDR) and Classification."
 	},
-	"github/rafaeleufrasio/lightning": {
-	"id": "github/rafaeleufrasio/lightning",
-	"title": "github/rafaeleufrasio/lightning",
-	"url": " https://rseng.github.io/software/repository/github/rafaeleufrasio/lightning",
-	"content": "Lightning SED Fitting Package"
+	"github/martenlourens/pySDR": {
+	"id": "github/martenlourens/pySDR",
+	"title": "github/martenlourens/pySDR",
+	"url": " https://rseng.github.io/software/repository/github/martenlourens/pySDR",
+	"content": "A Python library for performing local gradient clustering (LGC) based sharpened dimensionality reduction (SDR)."
 	},
-	"github/mcsiple/mmrefpoints": {
-	"id": "github/mcsiple/mmrefpoints",
-	"title": "github/mcsiple/mmrefpoints",
-	"url": " https://rseng.github.io/software/repository/github/mcsiple/mmrefpoints",
-	"content": "A package for simulating marine mammal abundance and calculating reference points."
+	"github/Kkritos/Rapster": {
+	"id": "github/Kkritos/Rapster",
+	"title": "github/Kkritos/Rapster",
+	"url": " https://rseng.github.io/software/repository/github/Kkritos/Rapster",
+	"content": "Rapid population synthesis code for binary black hole mergers in dynamical environments."
 	},
-	"github/gagneurlab/drop": {
-	"id": "github/gagneurlab/drop",
-	"title": "github/gagneurlab/drop",
-	"url": " https://rseng.github.io/software/repository/github/gagneurlab/drop",
-	"content": "(Detection of RNA Outlier Pipeline) pipeline to find aberrant gene expression events in RNA sequencing data."
+	"github/labxscut/ksak": {
+	"id": "github/labxscut/ksak",
+	"title": "github/labxscut/ksak",
+	"url": " https://rseng.github.io/software/repository/github/labxscut/ksak",
+	"content": "None"
 	},
-	"github/amkram/shusher": {
-	"id": "github/amkram/shusher",
-	"title": "github/amkram/shusher",
-	"url": " https://rseng.github.io/software/repository/github/amkram/shusher",
-	"content": "Private, browser-based placement of genome sequences on phylogenetic trees using UShER."
+	"github/lpantano/seqbuster": {
+	"id": "github/lpantano/seqbuster",
+	"title": "github/lpantano/seqbuster",
+	"url": " https://rseng.github.io/software/repository/github/lpantano/seqbuster",
+	"content": "pipeline for the analysis of small RNA data"
 	},
-	"github/vcftools/index.html": {
-	"id": "github/vcftools/index.html",
-	"title": "github/vcftools/index.html",
-	"url": " https://rseng.github.io/software/repository/github/vcftools/index.html",
-	"content": "a program package designed to provide easily accessible methods for working with complex genetic variation data in the form of VCF files, such as those generated by the 1000 Genomes Project."
+	"github/lpantano/seqcluster": {
+	"id": "github/lpantano/seqcluster",
+	"title": "github/lpantano/seqcluster",
+	"url": " https://rseng.github.io/software/repository/github/lpantano/seqcluster",
+	"content": "small RNA analysis from NGS data"
 	},
-	"github/jpober/21cmSense": {
-	"id": "github/jpober/21cmSense",
-	"title": "github/jpober/21cmSense",
-	"url": " https://rseng.github.io/software/repository/github/jpober/21cmSense",
-	"content": "Code for calculating the sensitivity of 21cm experiments to the EoR power spectrum"
+	"github/ERPI-UL/HELP-VRclient": {
+	"id": "github/ERPI-UL/HELP-VRclient",
+	"title": "github/ERPI-UL/HELP-VRclient",
+	"url": " https://rseng.github.io/software/repository/github/ERPI-UL/HELP-VRclient",
+	"content": "Hybrid Extended Learning Platform (HELP) - VR client for Meta Quest"
 	},
-	"github/ExoSim/ExoSimPublic": {
-	"id": "github/ExoSim/ExoSimPublic",
-	"title": "github/ExoSim/ExoSimPublic",
-	"url": " https://rseng.github.io/software/repository/github/ExoSim/ExoSimPublic",
+	"github/SimonPfeifer/cows": {
+	"id": "github/SimonPfeifer/cows",
+	"title": "github/SimonPfeifer/cows",
+	"url": " https://rseng.github.io/software/repository/github/SimonPfeifer/cows",
+	"content": "None"
+	},
+	"github/yuliadm/mixComp": {
+	"id": "github/yuliadm/mixComp",
+	"title": "github/yuliadm/mixComp",
+	"url": " https://rseng.github.io/software/repository/github/yuliadm/mixComp",
+	"content": "None"
+	},
+	"github/yuansliu/minirmd": {
+	"id": "github/yuansliu/minirmd",
+	"title": "github/yuansliu/minirmd",
+	"url": " https://rseng.github.io/software/repository/github/yuansliu/minirmd",
 	"content": "None"
 	},
+	"github/justinmathias/isocalcR": {
+	"id": "github/justinmathias/isocalcR",
+	"title": "github/justinmathias/isocalcR",
+	"url": " https://rseng.github.io/software/repository/github/justinmathias/isocalcR",
+	"content": "R Package containing widely used isotope theory functions"
+	},
+	"github/stingraysoftware/stingray": {
+	"id": "github/stingraysoftware/stingray",
+	"title": "github/stingraysoftware/stingray",
+	"url": " https://rseng.github.io/software/repository/github/stingraysoftware/stingray",
+	"content": "Anything can happen in the next half hour (including spectral timing made easy)!"
+	},
+	"github/ParBLiSS/FastANI": {
+	"id": "github/ParBLiSS/FastANI",
+	"title": "github/ParBLiSS/FastANI",
+	"url": " https://rseng.github.io/software/repository/github/ParBLiSS/FastANI",
+	"content": "Fast Whole-Genome Similarity (ANI) Estimation"
+	},
 	"github/refresh-bio/whisper": {
 	"id": "github/refresh-bio/whisper",
 	"title": "github/refresh-bio/whisper",
@@ -13179,809 +12777,809 @@
 	"url": " https://rseng.github.io/software/repository/github/refresh-bio/agc",
 	"content": "Assembled Genomes Compressor"
 	},
-	"github/splicebox/PsiCLASS": {
-	"id": "github/splicebox/PsiCLASS",
-	"title": "github/splicebox/PsiCLASS",
-	"url": " https://rseng.github.io/software/repository/github/splicebox/PsiCLASS",
-	"content": "Simultaneous multi-sample transcript assembler for RNA-seq data"
-	},
-	"github/PanKonstantinos/MEvA-X": {
-	"id": "github/PanKonstantinos/MEvA-X",
-	"title": "github/PanKonstantinos/MEvA-X",
-	"url": " https://rseng.github.io/software/repository/github/PanKonstantinos/MEvA-X",
-	"content": "Open source Biomarker discovery tool based on multi-objective Evolutionary algorithm and the XGBoost Classifier"
-	},
-	"github/peikuan/WBBC": {
-	"id": "github/peikuan/WBBC",
-	"title": "github/peikuan/WBBC",
-	"url": " https://rseng.github.io/software/repository/github/peikuan/WBBC",
-	"content": "Westlake BioBank for Chinese pilot project"
+	"github/CyclotronResearchCentre/bidsme": {
+	"id": "github/CyclotronResearchCentre/bidsme",
+	"title": "github/CyclotronResearchCentre/bidsme",
+	"url": " https://rseng.github.io/software/repository/github/CyclotronResearchCentre/bidsme",
+	"content": "Flexible bidsificator for multimodal datasets"
 	},
-	"github/CPM-project/MCPM": {
-	"id": "github/CPM-project/MCPM",
-	"title": "github/CPM-project/MCPM",
-	"url": " https://rseng.github.io/software/repository/github/CPM-project/MCPM",
-	"content": "Modified CPM method"
+	"github/pyomeca/biorbd": {
+	"id": "github/pyomeca/biorbd",
+	"title": "github/pyomeca/biorbd",
+	"url": " https://rseng.github.io/software/repository/github/pyomeca/biorbd",
+	"content": "Biomechanical add-ons to the RigidBody Dynamics Library"
 	},
-	"github/markheckmann/OpenRepGrid.ic": {
-	"id": "github/markheckmann/OpenRepGrid.ic",
-	"title": "github/markheckmann/OpenRepGrid.ic",
-	"url": " https://rseng.github.io/software/repository/github/markheckmann/OpenRepGrid.ic",
-	"content": "shiny app for interpretive clustering of repgrids:"
+	"github/pyomeca/biosiglive": {
+	"id": "github/pyomeca/biosiglive",
+	"title": "github/pyomeca/biosiglive",
+	"url": " https://rseng.github.io/software/repository/github/pyomeca/biosiglive",
+	"content": "None"
 	},
-	"github/JamesPaynter/PyGRB": {
-	"id": "github/JamesPaynter/PyGRB",
-	"title": "github/JamesPaynter/PyGRB",
-	"url": " https://rseng.github.io/software/repository/github/JamesPaynter/PyGRB",
-	"content": "Gamma-ray burst analysis library"
+	"github/pyomeca/ezc3d": {
+	"id": "github/pyomeca/ezc3d",
+	"title": "github/pyomeca/ezc3d",
+	"url": " https://rseng.github.io/software/repository/github/pyomeca/ezc3d",
+	"content": "Easy to use C3D reader/writer for C++, Python and Matlab"
 	},
-	"github/mzemp/halogen": {
-	"id": "github/mzemp/halogen",
-	"title": "github/mzemp/halogen",
-	"url": " https://rseng.github.io/software/repository/github/mzemp/halogen",
-	"content": "Tool to generate spherically symmetric initial conditions for N-body simulations."
+	"github/HAWinther/FML": {
+	"id": "github/HAWinther/FML",
+	"title": "github/HAWinther/FML",
+	"url": " https://rseng.github.io/software/repository/github/HAWinther/FML",
+	"content": "A C++ library for working with particles and grids in a parallel setting."
 	},
-	"github/prajwel/curvit": {
-	"id": "github/prajwel/curvit",
-	"title": "github/prajwel/curvit",
-	"url": " https://rseng.github.io/software/repository/github/prajwel/curvit",
-	"content": "Create light curves from UVIT data."
+	"github/HAWinther/MG-PICOLA-PUBLIC": {
+	"id": "github/HAWinther/MG-PICOLA-PUBLIC",
+	"title": "github/HAWinther/MG-PICOLA-PUBLIC",
+	"url": " https://rseng.github.io/software/repository/github/HAWinther/MG-PICOLA-PUBLIC",
+	"content": "This is a modified version of the L-PICOLA code extending the COLA approach for simulating cosmological structure formation to theories that exhibit scale-dependent growth. It can compute matter power-spectra (CDM and total), redshift-space multipole power-spectra P0,P2,P4 and do halofinding on the fly. It can also include the effects of massive neutrinos on structure formation."
 	},
-	"github/julianreul/mode_behave": {
-	"id": "github/julianreul/mode_behave",
-	"title": "github/julianreul/mode_behave",
-	"url": " https://rseng.github.io/software/repository/github/julianreul/mode_behave",
-	"content": "A Python package for estimating mixed logit models with nonparametric distributions"
+	"github/griffithlab/regtools": {
+	"id": "github/griffithlab/regtools",
+	"title": "github/griffithlab/regtools",
+	"url": " https://rseng.github.io/software/repository/github/griffithlab/regtools",
+	"content": "Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression."
 	},
-	"github/copasi/basico": {
-	"id": "github/copasi/basico",
-	"title": "github/copasi/basico",
-	"url": " https://rseng.github.io/software/repository/github/copasi/basico",
-	"content": "A simplified python interface to COPASI."
+	"github/riatelab/osrm": {
+	"id": "github/riatelab/osrm",
+	"title": "github/riatelab/osrm",
+	"url": " https://rseng.github.io/software/repository/github/riatelab/osrm",
+	"content": "Shortest Paths and Travel Time from OpenStreetMap with R"
 	},
-	"github/copasi/COPASI": {
-	"id": "github/copasi/COPASI",
-	"title": "github/copasi/COPASI",
-	"url": " https://rseng.github.io/software/repository/github/copasi/COPASI",
-	"content": "COPASI is a software application for simulation and analysis of biochemical networks and their dynamics."
+	"github/YeoLab/FLARE": {
+	"id": "github/YeoLab/FLARE",
+	"title": "github/YeoLab/FLARE",
+	"url": " https://rseng.github.io/software/repository/github/YeoLab/FLARE",
+	"content": "RNA edit detection (SAILOR) and peak calling (FLARE)"
 	},
-	"github/maserlib/ExPRES": {
-	"id": "github/maserlib/ExPRES",
-	"title": "github/maserlib/ExPRES",
-	"url": " https://rseng.github.io/software/repository/github/maserlib/ExPRES",
-	"content": "Exoplanetary and Planetary Radio Emission Simulator"
+	"github/YeoLab/clipper": {
+	"id": "github/YeoLab/clipper",
+	"title": "github/YeoLab/clipper",
+	"url": " https://rseng.github.io/software/repository/github/YeoLab/clipper",
+	"content": "A tool to detect CLIP-seq peaks."
 	},
-	"github/mkenworthy/exorings": {
-	"id": "github/mkenworthy/exorings",
-	"title": "github/mkenworthy/exorings",
-	"url": " https://rseng.github.io/software/repository/github/mkenworthy/exorings",
-	"content": "Tools for fitting and displaying giant extrasolar planet ring systems."
+	"github/mtholder/ncl": {
+	"id": "github/mtholder/ncl",
+	"title": "github/mtholder/ncl",
+	"url": " https://rseng.github.io/software/repository/github/mtholder/ncl",
+	"content": "Nexus Class Library "
 	},
-	"github/dealii/dealii": {
-	"id": "github/dealii/dealii",
-	"title": "github/dealii/dealii",
-	"url": " https://rseng.github.io/software/repository/github/dealii/dealii",
-	"content": "The development repository for the deal.II finite element library."
+	"github/BenNordick/HiLoop": {
+	"id": "github/BenNordick/HiLoop",
+	"title": "github/BenNordick/HiLoop",
+	"url": " https://rseng.github.io/software/repository/github/BenNordick/HiLoop",
+	"content": "None"
 	},
-	"github/pontoppi/radlite": {
-	"id": "github/pontoppi/radlite",
-	"title": "github/pontoppi/radlite",
-	"url": " https://rseng.github.io/software/repository/github/pontoppi/radlite",
-	"content": "RADLite is the fast 2D/3D raytracer for infrared lines"
+	"github/arpan-52/Finalflash": {
+	"id": "github/arpan-52/Finalflash",
+	"title": "github/arpan-52/Finalflash",
+	"url": " https://rseng.github.io/software/repository/github/arpan-52/Finalflash",
+	"content": "An uGMRT Primary Beam Corrector with input FITS files"
 	},
-	"github/JCGonzS/mechnetor": {
-	"id": "github/JCGonzS/mechnetor",
-	"title": "github/JCGonzS/mechnetor",
-	"url": " https://rseng.github.io/software/repository/github/JCGonzS/mechnetor",
-	"content": "Protein Interaction Visualization"
+	"github/HDFGroup/hdf5": {
+	"id": "github/HDFGroup/hdf5",
+	"title": "github/HDFGroup/hdf5",
+	"url": " https://rseng.github.io/software/repository/github/HDFGroup/hdf5",
+	"content": "Official HDF5® Library Repository"
 	},
-	"github/YuLab-SMU/treeio": {
-	"id": "github/YuLab-SMU/treeio",
-	"title": "github/YuLab-SMU/treeio",
-	"url": " https://rseng.github.io/software/repository/github/YuLab-SMU/treeio",
-	"content": ":seedling: Base Classes and Functions for Phylogenetic Tree Input and Output"
+	"github/jianghuaijie/scLRTC": {
+	"id": "github/jianghuaijie/scLRTC",
+	"title": "github/jianghuaijie/scLRTC",
+	"url": " https://rseng.github.io/software/repository/github/jianghuaijie/scLRTC",
+	"content": "scLRTC:imputation for single-cell RNA-seq data via low rank tensor completion"
 	},
-	"github/mmore500/hstrat": {
-	"id": "github/mmore500/hstrat",
-	"title": "github/mmore500/hstrat",
-	"url": " https://rseng.github.io/software/repository/github/mmore500/hstrat",
-	"content": "hstrat enables phylogenetic inference on distributed digital evolution populations"
+	"github/jsobeck/MOOG_SCAT": {
+	"id": "github/jsobeck/MOOG_SCAT",
+	"title": "github/jsobeck/MOOG_SCAT",
+	"url": " https://rseng.github.io/software/repository/github/jsobeck/MOOG_SCAT",
+	"content": "Repository for the latest version of the MOOG_SCAT code"
 	},
-	"github/Rnazx/Scaling-Relations": {
-	"id": "github/Rnazx/Scaling-Relations",
-	"title": "github/Rnazx/Scaling-Relations",
-	"url": " https://rseng.github.io/software/repository/github/Rnazx/Scaling-Relations",
-	"content": "Python code to find the scaling relations for the galactic magnetic fields in terms of observables."
+	"github/dgrun/FateID": {
+	"id": "github/dgrun/FateID",
+	"title": "github/dgrun/FateID",
+	"url": " https://rseng.github.io/software/repository/github/dgrun/FateID",
+	"content": "R package for the inference of cell fate bias from single-cell RNA-seq data."
 	},
-	"github/EoRImaging/FHD": {
-	"id": "github/EoRImaging/FHD",
-	"title": "github/EoRImaging/FHD",
-	"url": " https://rseng.github.io/software/repository/github/EoRImaging/FHD",
-	"content": "Fast Holographic Deconvolution"
+	"github/GOVS-pack/GOVS": {
+	"id": "github/GOVS-pack/GOVS",
+	"title": "github/GOVS-pack/GOVS",
+	"url": " https://rseng.github.io/software/repository/github/GOVS-pack/GOVS",
+	"content": "Genome optimization via virtual simulation"
 	},
-	"github/zpliulab/GeoBind": {
-	"id": "github/zpliulab/GeoBind",
-	"title": "github/zpliulab/GeoBind",
-	"url": " https://rseng.github.io/software/repository/github/zpliulab/GeoBind",
-	"content": "Segmentation of nucleic acid binding interface on protein surface with geometric deep learning"
+	"github/myinxd/mcrgnet": {
+	"id": "github/myinxd/mcrgnet",
+	"title": "github/myinxd/mcrgnet",
+	"url": " https://rseng.github.io/software/repository/github/myinxd/mcrgnet",
+	"content": "Morphological Classification of Radio Galaxy Network"
 	},
-	"github/zpliulab/GENELink": {
-	"id": "github/zpliulab/GENELink",
-	"title": "github/zpliulab/GENELink",
-	"url": " https://rseng.github.io/software/repository/github/zpliulab/GENELink",
+	"github/mjshao06/pdifFinder": {
+	"id": "github/mjshao06/pdifFinder",
+	"title": "github/mjshao06/pdifFinder",
+	"url": " https://rseng.github.io/software/repository/github/mjshao06/pdifFinder",
 	"content": "None"
 	},
-	"github/jendelel/PrankWebApp": {
-	"id": "github/jendelel/PrankWebApp",
-	"title": "github/jendelel/PrankWebApp",
-	"url": " https://rseng.github.io/software/repository/github/jendelel/PrankWebApp",
-	"content": "Web application for protein-ligand binding sites analysis and visualization"
-	},
-	"github/ialopezt/GalLenspy": {
-	"id": "github/ialopezt/GalLenspy",
-	"title": "github/ialopezt/GalLenspy",
-	"url": " https://rseng.github.io/software/repository/github/ialopezt/GalLenspy",
-	"content": "This is a open code whose purpose is the reconstruction of mass profile in disc-like galaxies from the gravitational lensing effect."
+	"github/databio/GenomicDistributions": {
+	"id": "github/databio/GenomicDistributions",
+	"title": "github/databio/GenomicDistributions",
+	"url": " https://rseng.github.io/software/repository/github/databio/GenomicDistributions",
+	"content": "Calculate and plot distributions of genomic ranges"
 	},
-	"github/biobakery/phylophlan": {
-	"id": "github/biobakery/phylophlan",
-	"title": "github/biobakery/phylophlan",
-	"url": " https://rseng.github.io/software/repository/github/biobakery/phylophlan",
-	"content": "Precise phylogenetic analysis of microbial isolates and genomes from metagenomes"
+	"github/evolbioinfo/bdpn": {
+	"id": "github/evolbioinfo/bdpn",
+	"title": "github/evolbioinfo/bdpn",
+	"url": " https://rseng.github.io/software/repository/github/evolbioinfo/bdpn",
+	"content": "Birth-death epidemiological parameter estimator accounting for partner notification"
 	},
-	"github/biobakery/MetaPhlAn": {
-	"id": "github/biobakery/MetaPhlAn",
-	"title": "github/biobakery/MetaPhlAn",
-	"url": " https://rseng.github.io/software/repository/github/biobakery/MetaPhlAn",
-	"content": "MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data"
+	"github/evolbioinfo/bdei": {
+	"id": "github/evolbioinfo/bdei",
+	"title": "github/evolbioinfo/bdei",
+	"url": " https://rseng.github.io/software/repository/github/evolbioinfo/bdei",
+	"content": "Birth-Death Exposed-Infectious (BDEI) model parameter inference from phylogenetic trees"
 	},
-	"github/biobakery/halla": {
-	"id": "github/biobakery/halla",
-	"title": "github/biobakery/halla",
-	"url": " https://rseng.github.io/software/repository/github/biobakery/halla",
+	"github/evolbioinfo/treesimulator": {
+	"id": "github/evolbioinfo/treesimulator",
+	"title": "github/evolbioinfo/treesimulator",
+	"url": " https://rseng.github.io/software/repository/github/evolbioinfo/treesimulator",
 	"content": "None"
 	},
-	"github/axgoujon/convex_ridge_regularizers": {
-	"id": "github/axgoujon/convex_ridge_regularizers",
-	"title": "github/axgoujon/convex_ridge_regularizers",
-	"url": " https://rseng.github.io/software/repository/github/axgoujon/convex_ridge_regularizers",
+	"github/mikesmitka/truvot": {
+	"id": "github/mikesmitka/truvot",
+	"title": "github/mikesmitka/truvot",
+	"url": " https://rseng.github.io/software/repository/github/mikesmitka/truvot",
 	"content": "None"
 	},
-	"github/eead-csic-compbio/get_homologues": {
-	"id": "github/eead-csic-compbio/get_homologues",
-	"title": "github/eead-csic-compbio/get_homologues",
-	"url": " https://rseng.github.io/software/repository/github/eead-csic-compbio/get_homologues",
-	"content": "GET_HOMOLOGUES: a versatile software package for pan-genome analysis"
+	"github/percolator/percolator": {
+	"id": "github/percolator/percolator",
+	"title": "github/percolator/percolator",
+	"url": " https://rseng.github.io/software/repository/github/percolator/percolator",
+	"content": "Semi-supervised learning for peptide identification from shotgun proteomics datasets "
 	},
-	"github/fermisurfaces/IFermi": {
-	"id": "github/fermisurfaces/IFermi",
-	"title": "github/fermisurfaces/IFermi",
-	"url": " https://rseng.github.io/software/repository/github/fermisurfaces/IFermi",
-	"content": "Fermi surface generation, analysis and visualisation."
+	"github/PNNL-m-q/mza": {
+	"id": "github/PNNL-m-q/mza",
+	"title": "github/PNNL-m-q/mza",
+	"url": " https://rseng.github.io/software/repository/github/PNNL-m-q/mza",
+	"content": "Software to convert multidimensional MS data from files in proprietary vendor formats to HDF5 format in the simple MZA data structure."
 	},
-	"github/xcompact3d/Incompact3d": {
-	"id": "github/xcompact3d/Incompact3d",
-	"title": "github/xcompact3d/Incompact3d",
-	"url": " https://rseng.github.io/software/repository/github/xcompact3d/Incompact3d",
-	"content": "New version of our solver for the incompressible Navier-Stokes equations"
+	"github/beastraban/INSANE": {
+	"id": "github/beastraban/INSANE",
+	"title": "github/beastraban/INSANE",
+	"url": " https://rseng.github.io/software/repository/github/beastraban/INSANE",
+	"content": "INflationary potential Simulator and ANalysis Engine"
 	},
-	"github/eXtremeGravityInstitute/LISA-Massive-Black-Hole": {
-	"id": "github/eXtremeGravityInstitute/LISA-Massive-Black-Hole",
-	"title": "github/eXtremeGravityInstitute/LISA-Massive-Black-Hole",
-	"url": " https://rseng.github.io/software/repository/github/eXtremeGravityInstitute/LISA-Massive-Black-Hole",
-	"content": "None"
+	"github/realfastvla/realfast": {
+	"id": "github/realfastvla/realfast",
+	"title": "github/realfastvla/realfast",
+	"url": " https://rseng.github.io/software/repository/github/realfastvla/realfast",
+	"content": "Real-time interferometric data analysis for the VLA"
 	},
-	"github/eXtremeGravityInstitute/QuickCBC": {
-	"id": "github/eXtremeGravityInstitute/QuickCBC",
-	"title": "github/eXtremeGravityInstitute/QuickCBC",
-	"url": " https://rseng.github.io/software/repository/github/eXtremeGravityInstitute/QuickCBC",
-	"content": "Rapid and Reliable Inference for Binary Mergers"
+	"github/realfastvla/rfpipe": {
+	"id": "github/realfastvla/rfpipe",
+	"title": "github/realfastvla/rfpipe",
+	"url": " https://rseng.github.io/software/repository/github/realfastvla/rfpipe",
+	"content": "Fast radio interferometric transient search pipeline"
 	},
-	"github/jupyterlab/jupyterlab": {
-	"id": "github/jupyterlab/jupyterlab",
-	"title": "github/jupyterlab/jupyterlab",
-	"url": " https://rseng.github.io/software/repository/github/jupyterlab/jupyterlab",
-	"content": "JupyterLab computational environment."
+	"github/nayu0419/stMMR": {
+	"id": "github/nayu0419/stMMR",
+	"title": "github/nayu0419/stMMR",
+	"url": " https://rseng.github.io/software/repository/github/nayu0419/stMMR",
+	"content": "stMMR"
 	},
-	"github/y-256/libdivsufsort": {
-	"id": "github/y-256/libdivsufsort",
-	"title": "github/y-256/libdivsufsort",
-	"url": " https://rseng.github.io/software/repository/github/y-256/libdivsufsort",
-	"content": "A lightweight suffix-sorting library"
+	"github/SpeedyWeather/SpeedyWeather.jl": {
+	"id": "github/SpeedyWeather/SpeedyWeather.jl",
+	"title": "github/SpeedyWeather/SpeedyWeather.jl",
+	"url": " https://rseng.github.io/software/repository/github/SpeedyWeather/SpeedyWeather.jl",
+	"content": "Play atmospheric modelling like it&#39;s LEGO."
 	},
-	"github/IPK-BIT/divbrowse": {
-	"id": "github/IPK-BIT/divbrowse",
-	"title": "github/IPK-BIT/divbrowse",
-	"url": " https://rseng.github.io/software/repository/github/IPK-BIT/divbrowse",
-	"content": "A web application for interactive exploration and analysis of very large SNP matrices"
+	"github/heli-xu/findSVI": {
+	"id": "github/heli-xu/findSVI",
+	"title": "github/heli-xu/findSVI",
+	"url": " https://rseng.github.io/software/repository/github/heli-xu/findSVI",
+	"content": "Calculate CDC/ATSDR Social Vulnerability Index"
 	},
-	"github/hemanthpruthvi/PyAstroPol": {
-	"id": "github/hemanthpruthvi/PyAstroPol",
-	"title": "github/hemanthpruthvi/PyAstroPol",
-	"url": " https://rseng.github.io/software/repository/github/hemanthpruthvi/PyAstroPol",
-	"content": "Instrumental Polarization Analysis of Astronomical Optics"
+	"github/qmarcou/IGoR": {
+	"id": "github/qmarcou/IGoR",
+	"title": "github/qmarcou/IGoR",
+	"url": " https://rseng.github.io/software/repository/github/qmarcou/IGoR",
+	"content": "IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:"
 	},
-	"github/ypmen/PulsarX": {
-	"id": "github/ypmen/PulsarX",
-	"title": "github/ypmen/PulsarX",
-	"url": " https://rseng.github.io/software/repository/github/ypmen/PulsarX",
-	"content": "Pulsar searching"
+	"github/LuisGoncalves1/CLOWN": {
+	"id": "github/LuisGoncalves1/CLOWN",
+	"title": "github/LuisGoncalves1/CLOWN",
+	"url": " https://rseng.github.io/software/repository/github/LuisGoncalves1/CLOWN",
+	"content": "Cloud detection software to be applied in observatories with an all-sky camera."
 	},
-	"github/GRChombo/GRChombo": {
-	"id": "github/GRChombo/GRChombo",
-	"title": "github/GRChombo/GRChombo",
-	"url": " https://rseng.github.io/software/repository/github/GRChombo/GRChombo",
-	"content": "An AMR based open-source code for numerical relativity simulations."
+	"github/jah1994/PyTorchDIA": {
+	"id": "github/jah1994/PyTorchDIA",
+	"title": "github/jah1994/PyTorchDIA",
+	"url": " https://rseng.github.io/software/repository/github/jah1994/PyTorchDIA",
+	"content": "PyTorchDIA is a Difference Image Analysis tool. It is built around the PyTorch machine learning framework, and uses automatic differentiation and (optional) GPU support to perform lightning fast optimisations of image models."
 	},
-	"github/GRChombo/GRFolres": {
-	"id": "github/GRChombo/GRFolres",
-	"title": "github/GRChombo/GRFolres",
-	"url": " https://rseng.github.io/software/repository/github/GRChombo/GRFolres",
-	"content": "Extension to GRChombo for Modified Gravity simulations"
+	"github/vsoch/citelang": {
+	"id": "github/vsoch/citelang",
+	"title": "github/vsoch/citelang",
+	"url": " https://rseng.github.io/software/repository/github/vsoch/citelang",
+	"content": "markdown syntax and credit system for software!"
 	},
-	"github/GRChombo/GRDzhadzha": {
-	"id": "github/GRChombo/GRDzhadzha",
-	"title": "github/GRChombo/GRDzhadzha",
-	"url": " https://rseng.github.io/software/repository/github/GRChombo/GRDzhadzha",
-	"content": "A code to evolve matter on curved spacetimes with an analytic time and space dependence, e.g. black holes"
+	"github/vsoch/gridtest": {
+	"id": "github/vsoch/gridtest",
+	"title": "github/vsoch/gridtest",
+	"url": " https://rseng.github.io/software/repository/github/vsoch/gridtest",
+	"content": "grid parameters and testing for Python modules and functions"
 	},
-	"github/freemed/freeshim": {
-	"id": "github/freemed/freeshim",
-	"title": "github/freemed/freeshim",
-	"url": " https://rseng.github.io/software/repository/github/freemed/freeshim",
-	"content": "opensource multiplatform medical device interface"
+	"github/sheydenreich/threepoint": {
+	"id": "github/sheydenreich/threepoint",
+	"title": "github/sheydenreich/threepoint",
+	"url": " https://rseng.github.io/software/repository/github/sheydenreich/threepoint",
+	"content": "None"
 	},
-	"github/MJTemple/qsogen": {
-	"id": "github/MJTemple/qsogen",
-	"title": "github/MJTemple/qsogen",
-	"url": " https://rseng.github.io/software/repository/github/MJTemple/qsogen",
-	"content": "Model quasar SEDs"
+	"github/AA-ALERT/frbcat-web": {
+	"id": "github/AA-ALERT/frbcat-web",
+	"title": "github/AA-ALERT/frbcat-web",
+	"url": " https://rseng.github.io/software/repository/github/AA-ALERT/frbcat-web",
+	"content": "FRBCat web"
 	},
-	"github/christophmschaefer/miluphcuda": {
-	"id": "github/christophmschaefer/miluphcuda",
-	"title": "github/christophmschaefer/miluphcuda",
-	"url": " https://rseng.github.io/software/repository/github/christophmschaefer/miluphcuda",
-	"content": "smooth particle hydrodynamics code"
+	"github/AA-ALERT/frbcatdb": {
+	"id": "github/AA-ALERT/frbcatdb",
+	"title": "github/AA-ALERT/frbcatdb",
+	"url": " https://rseng.github.io/software/repository/github/AA-ALERT/frbcatdb",
+	"content": "Fast Radio Burst (FRB) Catalogue DB management"
 	},
-	"github/jollejolles/pirecorder": {
-	"id": "github/jollejolles/pirecorder",
-	"title": "github/jollejolles/pirecorder",
-	"url": " https://rseng.github.io/software/repository/github/jollejolles/pirecorder",
-	"content": "Controlled and automated image and video recording with the raspberry pi"
+	"github/AA-ALERT/AMBER": {
+	"id": "github/AA-ALERT/AMBER",
+	"title": "github/AA-ALERT/AMBER",
+	"url": " https://rseng.github.io/software/repository/github/AA-ALERT/AMBER",
+	"content": "A many-core transient searching pipeline, designed mainly to search in real-time for Fast Radio Bursts."
 	},
-	"github/JulienPeloton/s4cmb": {
-	"id": "github/JulienPeloton/s4cmb",
-	"title": "github/JulienPeloton/s4cmb",
-	"url": " https://rseng.github.io/software/repository/github/JulienPeloton/s4cmb",
-	"content": "Simulation of instrumental systematic effects in the context of CMB observations"
+	"github/AA-ALERT/AstroData": {
+	"id": "github/AA-ALERT/AstroData",
+	"title": "github/AA-ALERT/AstroData",
+	"url": " https://rseng.github.io/software/repository/github/AA-ALERT/AstroData",
+	"content": "Set of C++ classes to operate on radio astronomical data."
 	},
-	"github/semaphoreP/whereistheplanet": {
-	"id": "github/semaphoreP/whereistheplanet",
-	"title": "github/semaphoreP/whereistheplanet",
-	"url": " https://rseng.github.io/software/repository/github/semaphoreP/whereistheplanet",
-	"content": "Prediciting the position of exoplanets"
+	"github/AA-ALERT/Dedispersion": {
+	"id": "github/AA-ALERT/Dedispersion",
+	"title": "github/AA-ALERT/Dedispersion",
+	"url": " https://rseng.github.io/software/repository/github/AA-ALERT/Dedispersion",
+	"content": "Radio astronomy dedispersion algorithm implemented for many-core accelerators."
 	},
-	"github/GeminiDRSoftware/DRAGONS": {
-	"id": "github/GeminiDRSoftware/DRAGONS",
-	"title": "github/GeminiDRSoftware/DRAGONS",
-	"url": " https://rseng.github.io/software/repository/github/GeminiDRSoftware/DRAGONS",
-	"content": "Data Reduction for Astronomy from Gemini Observatory North and South"
+	"github/DeltaRCM/pyDeltaRCM": {
+	"id": "github/DeltaRCM/pyDeltaRCM",
+	"title": "github/DeltaRCM/pyDeltaRCM",
+	"url": " https://rseng.github.io/software/repository/github/DeltaRCM/pyDeltaRCM",
+	"content": "Delta model with a reduced-complexity approach"
 	},
-	"github/marseille-proteomique/DIAgui": {
-	"id": "github/marseille-proteomique/DIAgui",
-	"title": "github/marseille-proteomique/DIAgui",
-	"url": " https://rseng.github.io/software/repository/github/marseille-proteomique/DIAgui",
-	"content": "An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)"
+	"github/cgre-aachen/gemgis": {
+	"id": "github/cgre-aachen/gemgis",
+	"title": "github/cgre-aachen/gemgis",
+	"url": " https://rseng.github.io/software/repository/github/cgre-aachen/gemgis",
+	"content": "Spatial data processing for geomodeling"
 	},
-	"github/jlenain/flaapluc": {
-	"id": "github/jlenain/flaapluc",
-	"title": "github/jlenain/flaapluc",
-	"url": " https://rseng.github.io/software/repository/github/jlenain/flaapluc",
-	"content": "Dirty but quick Fermi-LAT analysis"
+	"github/ylab-hi/ScanExitronLR": {
+	"id": "github/ylab-hi/ScanExitronLR",
+	"title": "github/ylab-hi/ScanExitronLR",
+	"url": " https://rseng.github.io/software/repository/github/ylab-hi/ScanExitronLR",
+	"content": "A package for the characterization and quantification of exitron splicing events in long-read RNA-seq"
 	},
-	"github/pangeo-data/climpred": {
-	"id": "github/pangeo-data/climpred",
-	"title": "github/pangeo-data/climpred",
-	"url": " https://rseng.github.io/software/repository/github/pangeo-data/climpred",
-	"content": ":earth_americas: Verification of weather and climate forecasts. :earth_africa:"
+	"github/ylab-hi/ScanITD": {
+	"id": "github/ylab-hi/ScanITD",
+	"title": "github/ylab-hi/ScanITD",
+	"url": " https://rseng.github.io/software/repository/github/ylab-hi/ScanITD",
+	"content": "None"
 	},
-	"github/ci-for-science/self-hosted-runners": {
-	"id": "github/ci-for-science/self-hosted-runners",
-	"title": "github/ci-for-science/self-hosted-runners",
-	"url": " https://rseng.github.io/software/repository/github/ci-for-science/self-hosted-runners",
-	"content": "Recipe to install and configure a GitHub action runner using Ansible"
+	"github/sebastian-zieba/PACMAN": {
+	"id": "github/sebastian-zieba/PACMAN",
+	"title": "github/sebastian-zieba/PACMAN",
+	"url": " https://rseng.github.io/software/repository/github/sebastian-zieba/PACMAN",
+	"content": "PACMAN is a pipeline to reduce and analyze data collected by Hubble Wide Field Camera 3 (HST/WFC3) using either the G102 or G141 grism."
 	},
-	"github/Autostronomy/AstroPhot": {
-	"id": "github/Autostronomy/AstroPhot",
-	"title": "github/Autostronomy/AstroPhot",
-	"url": " https://rseng.github.io/software/repository/github/Autostronomy/AstroPhot",
-	"content": "A fast, flexible, automated, and differentiable astronomical image modelling tool for precise parallel multi-wavelength photometry"
+	"github/asancpt/caffsim": {
+	"id": "github/asancpt/caffsim",
+	"title": "github/asancpt/caffsim",
+	"url": " https://rseng.github.io/software/repository/github/asancpt/caffsim",
+	"content": "R package for simulation of caffeine concentration &lt;doi:10.12793/tcp.2017.25.3.141&gt;. https://asancpt.github.io/caffsim"
 	},
-	"github/scverse/anndata": {
-	"id": "github/scverse/anndata",
-	"title": "github/scverse/anndata",
-	"url": " https://rseng.github.io/software/repository/github/scverse/anndata",
-	"content": "Annotated data."
+	"github/anuwu/DAGN-Blindtest": {
+	"id": "github/anuwu/DAGN-Blindtest",
+	"title": "github/anuwu/DAGN-Blindtest",
+	"url": " https://rseng.github.io/software/repository/github/anuwu/DAGN-Blindtest",
+	"content": "Double Nuclei Galaxy Finder from SDSS. Check https://arxiv.org/abs/2011.12177"
 	},
-	"github/scverse/muon": {
-	"id": "github/scverse/muon",
-	"title": "github/scverse/muon",
-	"url": " https://rseng.github.io/software/repository/github/scverse/muon",
-	"content": "muon is a multimodal omics Python framework"
+	"github/anuwu/GOTHIC": {
+	"id": "github/anuwu/GOTHIC",
+	"title": "github/anuwu/GOTHIC",
+	"url": " https://rseng.github.io/software/repository/github/anuwu/GOTHIC",
+	"content": "Double Nuclei Galaxy Finder from SDSS. Check https://arxiv.org/abs/2011.12177"
 	},
-	"github/lucaborsato/trades": {
-	"id": "github/lucaborsato/trades",
-	"title": "github/lucaborsato/trades",
-	"url": " https://rseng.github.io/software/repository/github/lucaborsato/trades",
-	"content": "Fortran90 code for the orbital simulation of exoplanetary system with simultaneous fit of Transit Times and Radial Velocities. "
+	"github/Nicholaswogan/PhotochemPy": {
+	"id": "github/Nicholaswogan/PhotochemPy",
+	"title": "github/Nicholaswogan/PhotochemPy",
+	"url": " https://rseng.github.io/software/repository/github/Nicholaswogan/PhotochemPy",
+	"content": "Photochemical model of rocky planet&#39;s atmospheres."
 	},
-	"github/muLAn-project/muLAn": {
-	"id": "github/muLAn-project/muLAn",
-	"title": "github/muLAn-project/muLAn",
-	"url": " https://rseng.github.io/software/repository/github/muLAn-project/muLAn",
-	"content": "muLAn: MICROlensing Analysis software"
+	"github/Nicholaswogan/photochem": {
+	"id": "github/Nicholaswogan/photochem",
+	"title": "github/Nicholaswogan/photochem",
+	"url": " https://rseng.github.io/software/repository/github/Nicholaswogan/photochem",
+	"content": "A chemical model of planetary atmospheres"
 	},
-	"github/NRDD-constraints/NRDD": {
-	"id": "github/NRDD-constraints/NRDD",
-	"title": "github/NRDD-constraints/NRDD",
-	"url": " https://rseng.github.io/software/repository/github/NRDD-constraints/NRDD",
-	"content": "A python tool for calculating the exclusion plot for Dark Matter interaction with the Standard Model in non-relativistic Effective Theory Models. "
+	"github/ajwheeler/korg.jl": {
+	"id": "github/ajwheeler/korg.jl",
+	"title": "github/ajwheeler/korg.jl",
+	"url": " https://rseng.github.io/software/repository/github/ajwheeler/korg.jl",
+	"content": "1D LTE stellar spectral synthesis in pure Julia"
 	},
-	"github/yuguangchen1/KcwiKit": {
-	"id": "github/yuguangchen1/KcwiKit",
-	"title": "github/yuguangchen1/KcwiKit",
-	"url": " https://rseng.github.io/software/repository/github/yuguangchen1/KcwiKit",
-	"content": "Improving KCWI/KDERP pipeline."
+	"github/meta-logic/sequoia": {
+	"id": "github/meta-logic/sequoia",
+	"title": "github/meta-logic/sequoia",
+	"url": " https://rseng.github.io/software/repository/github/meta-logic/sequoia",
+	"content": "Design, play with, and analyze sequent calculus proof systems."
 	},
-	"github/aewallin/allantools": {
-	"id": "github/aewallin/allantools",
-	"title": "github/aewallin/allantools",
-	"url": " https://rseng.github.io/software/repository/github/aewallin/allantools",
-	"content": "Allan deviation and related time &amp; frequency statistics library in Python"
+	"github/davidhoksza/traveler": {
+	"id": "github/davidhoksza/traveler",
+	"title": "github/davidhoksza/traveler",
+	"url": " https://rseng.github.io/software/repository/github/davidhoksza/traveler",
+	"content": "Template-based RNA secondary structure visualization"
+	},
+	"github/davidhoksza/MolArt": {
+	"id": "github/davidhoksza/MolArt",
+	"title": "github/davidhoksza/MolArt",
+	"url": " https://rseng.github.io/software/repository/github/davidhoksza/MolArt",
+	"content": "MOLeculAR structure annoTator"
+	},
+	"github/HingeAssembler/HINGE": {
+	"id": "github/HingeAssembler/HINGE",
+	"title": "github/HingeAssembler/HINGE",
+	"url": " https://rseng.github.io/software/repository/github/HingeAssembler/HINGE",
+	"content": "Software accompanying &#34;HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution&#34;"
 	},
-	"github/dominic-chang/Krang.jl": {
-	"id": "github/dominic-chang/Krang.jl",
-	"title": "github/dominic-chang/Krang.jl",
-	"url": " https://rseng.github.io/software/repository/github/dominic-chang/Krang.jl",
-	"content": "Fast analytic raytracing around Kerr black holes"
+	"github/parallelwindfarms/byteparsing": {
+	"id": "github/parallelwindfarms/byteparsing",
+	"title": "github/parallelwindfarms/byteparsing",
+	"url": " https://rseng.github.io/software/repository/github/parallelwindfarms/byteparsing",
+	"content": "Parser for mixed binary/ASCII data in Python"
 	},
-	"github/genomicepidemiology/ARGprofiler": {
-	"id": "github/genomicepidemiology/ARGprofiler",
-	"title": "github/genomicepidemiology/ARGprofiler",
-	"url": " https://rseng.github.io/software/repository/github/genomicepidemiology/ARGprofiler",
-	"content": "A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets"
+	"github/colour-science/colour": {
+	"id": "github/colour-science/colour",
+	"title": "github/colour-science/colour",
+	"url": " https://rseng.github.io/software/repository/github/colour-science/colour",
+	"content": "Colour Science for Python"
 	},
-	"github/sinc-lab/miRe2e": {
-	"id": "github/sinc-lab/miRe2e",
-	"title": "github/sinc-lab/miRe2e",
-	"url": " https://rseng.github.io/software/repository/github/sinc-lab/miRe2e",
-	"content": "None"
+	"github/ctSkennerton/crass": {
+	"id": "github/ctSkennerton/crass",
+	"title": "github/ctSkennerton/crass",
+	"url": " https://rseng.github.io/software/repository/github/ctSkennerton/crass",
+	"content": "Crass is designed to identify and reconstruct CRISPR loci from raw metagenomic data without the need for assembly or prior knowledge of CRISPR in the data set."
 	},
-	"github/tylunel/pvpumpingsystem": {
-	"id": "github/tylunel/pvpumpingsystem",
-	"title": "github/tylunel/pvpumpingsystem",
-	"url": " https://rseng.github.io/software/repository/github/tylunel/pvpumpingsystem",
-	"content": "Provides tools for modeling photovoltaic water pumping system"
+	"github/ctSkennerton/minced": {
+	"id": "github/ctSkennerton/minced",
+	"title": "github/ctSkennerton/minced",
+	"url": " https://rseng.github.io/software/repository/github/ctSkennerton/minced",
+	"content": "Mining CRISPRs in Environmental Datasets"
 	},
-	"github/dokester/BayesicFitting": {
-	"id": "github/dokester/BayesicFitting",
-	"title": "github/dokester/BayesicFitting",
-	"url": " https://rseng.github.io/software/repository/github/dokester/BayesicFitting",
-	"content": "Bayesian fitting package"
+	"github/fmihpc/vlasiator": {
+	"id": "github/fmihpc/vlasiator",
+	"title": "github/fmihpc/vlasiator",
+	"url": " https://rseng.github.io/software/repository/github/fmihpc/vlasiator",
+	"content": "Vlasiator - ten letters you can count on"
 	},
-	"github/joe-antognini/kozai": {
-	"id": "github/joe-antognini/kozai",
-	"title": "github/joe-antognini/kozai",
-	"url": " https://rseng.github.io/software/repository/github/joe-antognini/kozai",
-	"content": "A Python package to evolve hierarchical triples in the secular approximation"
+	"github/fmihpc/analysator": {
+	"id": "github/fmihpc/analysator",
+	"title": "github/fmihpc/analysator",
+	"url": " https://rseng.github.io/software/repository/github/fmihpc/analysator",
+	"content": "Python based package for analyzing vlsv files produced by Vlasiator"
 	},
-	"github/johnlees/seer": {
-	"id": "github/johnlees/seer",
-	"title": "github/johnlees/seer",
-	"url": " https://rseng.github.io/software/repository/github/johnlees/seer",
-	"content": "sequence element (kmer) enrichment analysis"
+	"github/ixkael/Delight": {
+	"id": "github/ixkael/Delight",
+	"title": "github/ixkael/Delight",
+	"url": " https://rseng.github.io/software/repository/github/ixkael/Delight",
+	"content": "Photometric redshift via Gaussian processes with physical kernels"
 	},
-	"github/johnlees/pp-sketchlib": {
-	"id": "github/johnlees/pp-sketchlib",
-	"title": "github/johnlees/pp-sketchlib",
-	"url": " https://rseng.github.io/software/repository/github/johnlees/pp-sketchlib",
-	"content": "Library of sketching functions used by PopPUNK"
+	"github/ixkael/3DEX": {
+	"id": "github/ixkael/3DEX",
+	"title": "github/ixkael/3DEX",
+	"url": " https://rseng.github.io/software/repository/github/ixkael/3DEX",
+	"content": "3D expansions"
 	},
-	"github/johnlees/PopPUNK": {
-	"id": "github/johnlees/PopPUNK",
-	"title": "github/johnlees/PopPUNK",
-	"url": " https://rseng.github.io/software/repository/github/johnlees/PopPUNK",
-	"content": "PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)"
+	"github/ixkael/QuickSip": {
+	"id": "github/ixkael/QuickSip",
+	"title": "github/ixkael/QuickSip",
+	"url": " https://rseng.github.io/software/repository/github/ixkael/QuickSip",
+	"content": "Pipeline to quickly project Survey Image Properties (e.g. seeing, sky noise, airmass) onto the sky into Healpix maps using flexible weighting schemes. Initially designed to produce maps of observing condition related sources of systematics for the Dark Energy Survey, but will work with any multi-epoch survey and collection of images with valid WCS information."
 	},
-	"github/compomics/COSS": {
-	"id": "github/compomics/COSS",
-	"title": "github/compomics/COSS",
-	"url": " https://rseng.github.io/software/repository/github/compomics/COSS",
-	"content": "COSS: CompOmics Spectral Searching"
+	"github/astrorama/sourcextractorplusplus": {
+	"id": "github/astrorama/sourcextractorplusplus",
+	"title": "github/astrorama/sourcextractorplusplus",
+	"url": " https://rseng.github.io/software/repository/github/astrorama/sourcextractorplusplus",
+	"content": "SourceXtractor++, the next generation SExtractor"
 	},
-	"github/compomics/xilmass": {
-	"id": "github/compomics/xilmass",
-	"title": "github/compomics/xilmass",
-	"url": " https://rseng.github.io/software/repository/github/compomics/xilmass",
-	"content": "An algorithm to identify cross-linked peptides"
+	"github/BackofenLab/Peakhood": {
+	"id": "github/BackofenLab/Peakhood",
+	"title": "github/BackofenLab/Peakhood",
+	"url": " https://rseng.github.io/software/repository/github/BackofenLab/Peakhood",
+	"content": "Individual site context extraction for CLIP-Seq peak regions"
 	},
-	"github/compomics/DeepLC": {
-	"id": "github/compomics/DeepLC",
-	"title": "github/compomics/DeepLC",
-	"url": " https://rseng.github.io/software/repository/github/compomics/DeepLC",
-	"content": "DeepLC: Retention time prediction for (modified) peptides using Deep Learning."
+	"github/BackofenLab/IntaRNA": {
+	"id": "github/BackofenLab/IntaRNA",
+	"title": "github/BackofenLab/IntaRNA",
+	"url": " https://rseng.github.io/software/repository/github/BackofenLab/IntaRNA",
+	"content": "Efficient target prediction incorporating accessibility of interaction sites"
 	},
-	"github/Wimmics/olivaw": {
-	"id": "github/Wimmics/olivaw",
-	"title": "github/Wimmics/olivaw",
-	"url": " https://rseng.github.io/software/repository/github/Wimmics/olivaw",
-	"content": "Python framework for Agile ontology development support to be used with command lines with pre-commit or GitHub Actions"
+	"github/BackofenLab/StoatyDive": {
+	"id": "github/BackofenLab/StoatyDive",
+	"title": "github/BackofenLab/StoatyDive",
+	"url": " https://rseng.github.io/software/repository/github/BackofenLab/StoatyDive",
+	"content": "None"
 	},
-	"github/seeh/surprise": {
-	"id": "github/seeh/surprise",
-	"title": "github/seeh/surprise",
-	"url": " https://rseng.github.io/software/repository/github/seeh/surprise",
-	"content": "Package for estimating relative entropy and Surprise between two posterior samples, assuming they are Gaussian."
+	"github/vavrines/Kinetic.jl": {
+	"id": "github/vavrines/Kinetic.jl",
+	"title": "github/vavrines/Kinetic.jl",
+	"url": " https://rseng.github.io/software/repository/github/vavrines/Kinetic.jl",
+	"content": "Universal modeling and simulation of fluid dynamics upon machine learning"
 	},
-	"github/MNiwano/Eclaire": {
-	"id": "github/MNiwano/Eclaire",
-	"title": "github/MNiwano/Eclaire",
-	"url": " https://rseng.github.io/software/repository/github/MNiwano/Eclaire",
-	"content": "Python package using GPU via CUDA for astronomical image reduction"
+	"github/adrijd/beamconv": {
+	"id": "github/adrijd/beamconv",
+	"title": "github/adrijd/beamconv",
+	"url": " https://rseng.github.io/software/repository/github/adrijd/beamconv",
+	"content": "Code library to simulate CMB detector data with realistic optics-related contributions"
 	},
-	"github/c-white/blacklight": {
-	"id": "github/c-white/blacklight",
-	"title": "github/c-white/blacklight",
-	"url": " https://rseng.github.io/software/repository/github/c-white/blacklight",
-	"content": "GR ray tracing code for post-processing Athena++ simulations"
+	"github/s-goldman/Dusty-Evolved-Star-Kit": {
+	"id": "github/s-goldman/Dusty-Evolved-Star-Kit",
+	"title": "github/s-goldman/Dusty-Evolved-Star-Kit",
+	"url": " https://rseng.github.io/software/repository/github/s-goldman/Dusty-Evolved-Star-Kit",
+	"content": "SED-fitting python package for fitting evolved stars"
 	},
-	"github/JuBiotech/peak-performance": {
-	"id": "github/JuBiotech/peak-performance",
-	"title": "github/JuBiotech/peak-performance",
-	"url": " https://rseng.github.io/software/repository/github/JuBiotech/peak-performance",
-	"content": "A Python toolbox for Bayesian inference of peak areas."
+	"github/tcassanelli/pywpf": {
+	"id": "github/tcassanelli/pywpf",
+	"title": "github/tcassanelli/pywpf",
+	"url": " https://rseng.github.io/software/repository/github/tcassanelli/pywpf",
+	"content": "The purpose of this program is to see the effectivity and efficiency that a PCA folding analysis has compared to the Epoch Folding, which is the standard used for pulsar period computations."
 	},
-	"github/arangrhie/merfin": {
-	"id": "github/arangrhie/merfin",
-	"title": "github/arangrhie/merfin",
-	"url": " https://rseng.github.io/software/repository/github/arangrhie/merfin",
-	"content": "Evaluate variant calls and its combination with k-mer multiplicity"
+	"github/basp-group/purify": {
+	"id": "github/basp-group/purify",
+	"title": "github/basp-group/purify",
+	"url": " https://rseng.github.io/software/repository/github/basp-group/purify",
+	"content": "Software for radio-interferometric imaging 1.0"
 	},
-	"github/PedroBarbosa/VETA": {
-	"id": "github/PedroBarbosa/VETA",
-	"title": "github/PedroBarbosa/VETA",
-	"url": " https://rseng.github.io/software/repository/github/PedroBarbosa/VETA",
-	"content": "VETA - A simple tool do evaluate variant predictors"
+	"github/basp-group/SARA-dimensionality-reduction": {
+	"id": "github/basp-group/SARA-dimensionality-reduction",
+	"title": "github/basp-group/SARA-dimensionality-reduction",
+	"url": " https://rseng.github.io/software/repository/github/basp-group/SARA-dimensionality-reduction",
+	"content": "SARA-dimensionality-reduction: Fourier Dimensionality Reduction for radio-interferometric imaging with SARA"
 	},
-	"github/KerryAM-R/ggVolcanoR": {
-	"id": "github/KerryAM-R/ggVolcanoR",
-	"title": "github/KerryAM-R/ggVolcanoR",
-	"url": " https://rseng.github.io/software/repository/github/KerryAM-R/ggVolcanoR",
-	"content": "None"
+	"github/basp-group/faceted-hypersara": {
+	"id": "github/basp-group/faceted-hypersara",
+	"title": "github/basp-group/faceted-hypersara",
+	"url": " https://rseng.github.io/software/repository/github/basp-group/faceted-hypersara",
+	"content": "Faceted-HyperSARA"
 	},
-	"github/byuflowlab/GXBeam.jl": {
-	"id": "github/byuflowlab/GXBeam.jl",
-	"title": "github/byuflowlab/GXBeam.jl",
-	"url": " https://rseng.github.io/software/repository/github/byuflowlab/GXBeam.jl",
-	"content": "Pure Julia Implementation of Geometrically Exact Beam Theory"
+	"github/basp-group/Puri-Psi": {
+	"id": "github/basp-group/Puri-Psi",
+	"title": "github/basp-group/Puri-Psi",
+	"url": " https://rseng.github.io/software/repository/github/basp-group/Puri-Psi",
+	"content": "Software platform for Scalable radio-interferometric imaging 2.0"
 	},
-	"github/montilab/nf-gwas-pipeline": {
-	"id": "github/montilab/nf-gwas-pipeline",
-	"title": "github/montilab/nf-gwas-pipeline",
-	"url": " https://rseng.github.io/software/repository/github/montilab/nf-gwas-pipeline",
-	"content": "A Nextflow Genome-Wide Association Study (GWAS) Pipeline"
+	"github/basp-group/BUQO": {
+	"id": "github/basp-group/BUQO",
+	"title": "github/basp-group/BUQO",
+	"url": " https://rseng.github.io/software/repository/github/basp-group/BUQO",
+	"content": "BUQO: Bayesian Uncertainty Quantification by Optimisation"
 	},
-	"github/riogroup/SORA": {
-	"id": "github/riogroup/SORA",
-	"title": "github/riogroup/SORA",
-	"url": " https://rseng.github.io/software/repository/github/riogroup/SORA",
-	"content": "None"
+	"github/basp-group/Optical-Interferometry-Trilinear": {
+	"id": "github/basp-group/Optical-Interferometry-Trilinear",
+	"title": "github/basp-group/Optical-Interferometry-Trilinear",
+	"url": " https://rseng.github.io/software/repository/github/basp-group/Optical-Interferometry-Trilinear",
+	"content": "Nonconvex optimisation approach to optical-interferometric imaging"
 	},
-	"github/johannesulf/dsigma": {
-	"id": "github/johannesulf/dsigma",
-	"title": "github/johannesulf/dsigma",
-	"url": " https://rseng.github.io/software/repository/github/johannesulf/dsigma",
-	"content": "A Galaxy-Galaxy Lensing Python Package"
+	"github/basp-group/SARA-PPD": {
+	"id": "github/basp-group/SARA-PPD",
+	"title": "github/basp-group/SARA-PPD",
+	"url": " https://rseng.github.io/software/repository/github/basp-group/SARA-PPD",
+	"content": "SARA-PPD: Preconditioned primal-dual algorithm for radio-interferometric imaging"
 	},
-	"github/atakan/KeplerSolver": {
-	"id": "github/atakan/KeplerSolver",
-	"title": "github/atakan/KeplerSolver",
-	"url": " https://rseng.github.io/software/repository/github/atakan/KeplerSolver",
-	"content": "A code for solving Kepler&#39;s equation, with arbitrary epoch."
+	"github/basp-group/sopt": {
+	"id": "github/basp-group/sopt",
+	"title": "github/basp-group/sopt",
+	"url": " https://rseng.github.io/software/repository/github/basp-group/sopt",
+	"content": "SOPT: Sparse OPTimisation."
 	},
-	"github/BenMql/coral": {
-	"id": "github/BenMql/coral",
-	"title": "github/BenMql/coral",
-	"url": " https://rseng.github.io/software/repository/github/BenMql/coral",
-	"content": "Parallel spectral solver for partial differential equations in the plane layer geometry. "
+	"github/sina-cb/Tn-seqExplorer": {
+	"id": "github/sina-cb/Tn-seqExplorer",
+	"title": "github/sina-cb/Tn-seqExplorer",
+	"url": " https://rseng.github.io/software/repository/github/sina-cb/Tn-seqExplorer",
+	"content": "Tn-seq Explorer allows users to explore and analyze Tn-seq data for prokaryotic (bacterial or archaeal) genomes. It implements two alternative methods for identification of essential genes and provides additional tools to investigate the Tn-seq data. The primary goal of the data analysis is to study fitness by identifying genes that are essential or beneficial under specific growth conditions."
 	},
-	"github/fjdu/rac-2d": {
-	"id": "github/fjdu/rac-2d",
-	"title": "github/fjdu/rac-2d",
-	"url": " https://rseng.github.io/software/repository/github/fjdu/rac-2d",
-	"content": "Radiative transfer and chemistry"
+	"github/sdrastro/NWelch": {
+	"id": "github/sdrastro/NWelch",
+	"title": "github/sdrastro/NWelch",
+	"url": " https://rseng.github.io/software/repository/github/sdrastro/NWelch",
+	"content": "python implementation of Welch&#39;s method for estimating the power spectra, complex cross-spectrum, magnitude-squared coherence, and phase spectrum of unevenly spaced, bivariate time series"
 	},
-	"github/fjdu/myRadex": {
-	"id": "github/fjdu/myRadex",
-	"title": "github/fjdu/myRadex",
-	"url": " https://rseng.github.io/software/repository/github/fjdu/myRadex",
-	"content": "Similar to radex, with a different way to solve the statistical equilibrium problem"
+	"github/maho3/ltu-ili": {
+	"id": "github/maho3/ltu-ili",
+	"title": "github/maho3/ltu-ili",
+	"url": " https://rseng.github.io/software/repository/github/maho3/ltu-ili",
+	"content": "Robust ML in Astro"
 	},
-	"github/takafumi291/ESSENCE": {
-	"id": "github/takafumi291/ESSENCE",
-	"title": "github/takafumi291/ESSENCE",
-	"url": " https://rseng.github.io/software/repository/github/takafumi291/ESSENCE",
-	"content": "A python package for evaluating the statistical significance of the image analysis and signal detection under correlated noise in the interferometric images (e.g., ALMA, NOEMA)."
+	"github/JacksonBurns/astartes": {
+	"id": "github/JacksonBurns/astartes",
+	"title": "github/JacksonBurns/astartes",
+	"url": " https://rseng.github.io/software/repository/github/JacksonBurns/astartes",
+	"content": "Better Data Splits for Machine Learning"
 	},
-	"github/magnuspalmblad/averageRegions": {
-	"id": "github/magnuspalmblad/averageRegions",
-	"title": "github/magnuspalmblad/averageRegions",
-	"url": " https://rseng.github.io/software/repository/github/magnuspalmblad/averageRegions",
-	"content": "averageRegions averages the spectra in all or a defined subset of regions in a SCiLS Lab dataset and outputs this a Bruker-style .xy file."
+	"github/Goobley/Radynversion": {
+	"id": "github/Goobley/Radynversion",
+	"title": "github/Goobley/Radynversion",
+	"url": " https://rseng.github.io/software/repository/github/Goobley/Radynversion",
+	"content": "Inverting Solar Flare Observations with Invertible Neural Nets (with RADYN physics) "
 	},
-	"github/magnuspalmblad/shic": {
-	"id": "github/magnuspalmblad/shic",
-	"title": "github/magnuspalmblad/shic",
-	"url": " https://rseng.github.io/software/repository/github/magnuspalmblad/shic",
-	"content": "shic is a collection of shims for use in automated workflow composition"
+	"github/umbralcalc/helmpy": {
+	"id": "github/umbralcalc/helmpy",
+	"title": "github/umbralcalc/helmpy",
+	"url": " https://rseng.github.io/software/repository/github/umbralcalc/helmpy",
+	"content": "An all-in-one python class for optimised stochastic simulation and forecasting the effect of mass drug administration on helminth (parasitic worm) disease transmission"
 	},
-	"github/magnuspalmblad/addFeatures": {
-	"id": "github/magnuspalmblad/addFeatures",
-	"title": "github/magnuspalmblad/addFeatures",
-	"url": " https://rseng.github.io/software/repository/github/magnuspalmblad/addFeatures",
-	"content": "addFeatures adds spot images to a SCiLS Lab dataset from a list of defined mass spectral features"
+	"github/umbralcalc/foxi": {
+	"id": "github/umbralcalc/foxi",
+	"title": "github/umbralcalc/foxi",
+	"url": " https://rseng.github.io/software/repository/github/umbralcalc/foxi",
+	"content": "Futuristic Observations and their eXpected Information: package for automated computation of a suite of information-theoretic and Bayesian expected utilities for deciding between scientific experimental designs "
 	},
-	"github/biocore-ntnu/pyranges": {
-	"id": "github/biocore-ntnu/pyranges",
-	"title": "github/biocore-ntnu/pyranges",
-	"url": " https://rseng.github.io/software/repository/github/biocore-ntnu/pyranges",
-	"content": "Performant Pythonic GenomicRanges"
+	"github/umbralcalc/nfield": {
+	"id": "github/umbralcalc/nfield",
+	"title": "github/umbralcalc/nfield",
+	"url": " https://rseng.github.io/software/repository/github/umbralcalc/nfield",
+	"content": "Code for generally computing IR correlators during inflation with n-field dimensions - makes use of the formalism of Stochastic Inflation and hence &#39;mlsolver&#39;"
 	},
-	"github/biocore-ntnu/epic2": {
-	"id": "github/biocore-ntnu/epic2",
-	"title": "github/biocore-ntnu/epic2",
-	"url": " https://rseng.github.io/software/repository/github/biocore-ntnu/epic2",
-	"content": "Ultraperformant reimplementation of SICER"
+	"github/tkzeng/Pangolin": {
+	"id": "github/tkzeng/Pangolin",
+	"title": "github/tkzeng/Pangolin",
+	"url": " https://rseng.github.io/software/repository/github/tkzeng/Pangolin",
+	"content": "Pangolin is a deep-learning method for predicting splice site strengths."
 	},
-	"github/biocore-ntnu/ncls": {
-	"id": "github/biocore-ntnu/ncls",
-	"title": "github/biocore-ntnu/ncls",
-	"url": " https://rseng.github.io/software/repository/github/biocore-ntnu/ncls",
-	"content": "The Nested Containment List for Python. Basically a static interval-tree that is silly fast for both construction and lookups."
+	"github/OpenMDAO/dymos": {
+	"id": "github/OpenMDAO/dymos",
+	"title": "github/OpenMDAO/dymos",
+	"url": " https://rseng.github.io/software/repository/github/OpenMDAO/dymos",
+	"content": "Open Source Optimization of Dynamic Multidisciplinary Systems"
 	},
-	"github/dstndstn/tractor": {
-	"id": "github/dstndstn/tractor",
-	"title": "github/dstndstn/tractor",
-	"url": " https://rseng.github.io/software/repository/github/dstndstn/tractor",
-	"content": "The Tractor: measuring astronomical sources via probabilistic inference"
+	"github/justinread/gravsphere": {
+	"id": "github/justinread/gravsphere",
+	"title": "github/justinread/gravsphere",
+	"url": " https://rseng.github.io/software/repository/github/justinread/gravsphere",
+	"content": "None"
 	},
-	"github/dstndstn/astrometry.net": {
-	"id": "github/dstndstn/astrometry.net",
-	"title": "github/dstndstn/astrometry.net",
-	"url": " https://rseng.github.io/software/repository/github/dstndstn/astrometry.net",
-	"content": "Astrometry.net -- automatic recognition of astronomical images"
+	"github/mrc-ide/covid-sim": {
+	"id": "github/mrc-ide/covid-sim",
+	"title": "github/mrc-ide/covid-sim",
+	"url": " https://rseng.github.io/software/repository/github/mrc-ide/covid-sim",
+	"content": "This is the COVID-19 CovidSim microsimulation model developed by the MRC Centre for Global Infectious Disease Analysis hosted at Imperial College, London."
 	},
-	"github/SKA-INAF/caesar-rest": {
-	"id": "github/SKA-INAF/caesar-rest",
-	"title": "github/SKA-INAF/caesar-rest",
-	"url": " https://rseng.github.io/software/repository/github/SKA-INAF/caesar-rest",
-	"content": "Rest API for caesar source finder application"
+	"github/mrc-ide/dust": {
+	"id": "github/mrc-ide/dust",
+	"title": "github/mrc-ide/dust",
+	"url": " https://rseng.github.io/software/repository/github/mrc-ide/dust",
+	"content": ":sparkles::sparkles::sparkles: Iterate multiple realisations of stochastic models"
 	},
-	"github/Jonathanfreundlich/CuspCore": {
-	"id": "github/Jonathanfreundlich/CuspCore",
-	"title": "github/Jonathanfreundlich/CuspCore",
-	"url": " https://rseng.github.io/software/repository/github/Jonathanfreundlich/CuspCore",
-	"content": "A model for core formation in dark matter haloes and ultra-diffuse galaxies by outflow episodes"
+	"github/mrc-ide/drjacoby": {
+	"id": "github/mrc-ide/drjacoby",
+	"title": "github/mrc-ide/drjacoby",
+	"url": " https://rseng.github.io/software/repository/github/mrc-ide/drjacoby",
+	"content": "Flexible Markov chain monte carlo via reparameterization"
 	},
-	"github/pennucci/PulsePortraiture": {
-	"id": "github/pennucci/PulsePortraiture",
-	"title": "github/pennucci/PulsePortraiture",
-	"url": " https://rseng.github.io/software/repository/github/pennucci/PulsePortraiture",
-	"content": "PulsePortraiture (PP): a wideband pulsar timing code written in python.  It uses an extension of Joe Taylor&#39;s FFTFIT algorithm (Taylor 1992) to simultaneously measure a phase (TOA) and dispersion measure (DM).  PSRCHIVE, lmfit, and the latest vertsions of numpy and scipy are required."
+	"github/mrc-ide/dde": {
+	"id": "github/mrc-ide/dde",
+	"title": "github/mrc-ide/dde",
+	"url": " https://rseng.github.io/software/repository/github/mrc-ide/dde",
+	"content": ":clock1130::soon::clock9: Delay differential equation solver"
 	},
-	"github/YinanZhao21/SOAP_GPU": {
-	"id": "github/YinanZhao21/SOAP_GPU",
-	"title": "github/YinanZhao21/SOAP_GPU",
-	"url": " https://rseng.github.io/software/repository/github/YinanZhao21/SOAP_GPU",
-	"content": "None"
+	"github/mrc-ide/PlasmoMAPI": {
+	"id": "github/mrc-ide/PlasmoMAPI",
+	"title": "github/mrc-ide/PlasmoMAPI",
+	"url": " https://rseng.github.io/software/repository/github/mrc-ide/PlasmoMAPI",
+	"content": "Mapping Plasmodium Spatial Connectivity from Genetic Data"
 	},
-	"github/ExObsSim/ExoRad2-public": {
-	"id": "github/ExObsSim/ExoRad2-public",
-	"title": "github/ExObsSim/ExoRad2-public",
-	"url": " https://rseng.github.io/software/repository/github/ExObsSim/ExoRad2-public",
-	"content": "ExoRad, the generic point source radiometric model."
+	"github/mrc-ide/odin": {
+	"id": "github/mrc-ide/odin",
+	"title": "github/mrc-ide/odin",
+	"url": " https://rseng.github.io/software/repository/github/mrc-ide/odin",
+	"content": "ᚩ A DSL for describing and solving differential equations in R"
 	},
-	"github/rickhelmus/patRoon": {
-	"id": "github/rickhelmus/patRoon",
-	"title": "github/rickhelmus/patRoon",
-	"url": " https://rseng.github.io/software/repository/github/rickhelmus/patRoon",
-	"content": "Workflow solutions for mass-spectrometry based non-target analysis."
+	"github/mrc-ide/provisionr": {
+	"id": "github/mrc-ide/provisionr",
+	"title": "github/mrc-ide/provisionr",
+	"url": " https://rseng.github.io/software/repository/github/mrc-ide/provisionr",
+	"content": ":package::package::arrow_right::classical_building: Provision a library of R packages"
 	},
-	"github/torluca/morphofit": {
-	"id": "github/torluca/morphofit",
-	"title": "github/torluca/morphofit",
-	"url": " https://rseng.github.io/software/repository/github/torluca/morphofit",
-	"content": "A Python package for the morphological analysis of galaxies (Tortorelli &amp; Mercurio 2023)."
+	"github/mrc-ide/sircovid": {
+	"id": "github/mrc-ide/sircovid",
+	"title": "github/mrc-ide/sircovid",
+	"url": " https://rseng.github.io/software/repository/github/mrc-ide/sircovid",
+	"content": "None"
 	},
-	"github/xdqso/xdqso": {
-	"id": "github/xdqso/xdqso",
-	"title": "github/xdqso/xdqso",
-	"url": " https://rseng.github.io/software/repository/github/xdqso/xdqso",
-	"content": "Quasar classification with XD"
+	"github/mrc-ide/squire": {
+	"id": "github/mrc-ide/squire",
+	"title": "github/mrc-ide/squire",
+	"url": " https://rseng.github.io/software/repository/github/mrc-ide/squire",
+	"content": "SEIR transmission model of COVID-19. Documentation at:"
 	},
-	"github/pyro-kinetics/pyrokinetics": {
-	"id": "github/pyro-kinetics/pyrokinetics",
-	"title": "github/pyro-kinetics/pyrokinetics",
-	"url": " https://rseng.github.io/software/repository/github/pyro-kinetics/pyrokinetics",
-	"content": "Python library to run and analyse gyrokinetics simulations"
+	"github/mrc-ide/global-lmic-reports-orderly": {
+	"id": "github/mrc-ide/global-lmic-reports-orderly",
+	"title": "github/mrc-ide/global-lmic-reports-orderly",
+	"url": " https://rseng.github.io/software/repository/github/mrc-ide/global-lmic-reports-orderly",
+	"content": "COVID-19 forecast reports for LMICs"
 	},
-	"github/ajwheeler/korg.jl": {
-	"id": "github/ajwheeler/korg.jl",
-	"title": "github/ajwheeler/korg.jl",
-	"url": " https://rseng.github.io/software/repository/github/ajwheeler/korg.jl",
-	"content": "1D LTE stellar spectral synthesis in pure Julia"
+	"github/mrc-ide/PhyDyn": {
+	"id": "github/mrc-ide/PhyDyn",
+	"title": "github/mrc-ide/PhyDyn",
+	"url": " https://rseng.github.io/software/repository/github/mrc-ide/PhyDyn",
+	"content": "PhyDyn: Epidemiological modelling in BEAST"
 	},
-	"github/csj607/STaRS": {
-	"id": "github/csj607/STaRS",
-	"title": "github/csj607/STaRS",
-	"url": " https://rseng.github.io/software/repository/github/csj607/STaRS",
-	"content": "Sejong Radiative Transfer through Raman and Rayleigh Scattering with atomic hydrogen"
+	"github/mrc-ide/cinterpolate": {
+	"id": "github/mrc-ide/cinterpolate",
+	"title": "github/mrc-ide/cinterpolate",
+	"url": " https://rseng.github.io/software/repository/github/mrc-ide/cinterpolate",
+	"content": ":bar_chart::arrow_right::wavy_dash: Interpolating functions from C, in R"
 	},
-	"github/jlustigy/coronagraph": {
-	"id": "github/jlustigy/coronagraph",
-	"title": "github/jlustigy/coronagraph",
-	"url": " https://rseng.github.io/software/repository/github/jlustigy/coronagraph",
-	"content": "A Python noise model for directly imaging exoplanets "
+	"github/mrc-ide/rrq": {
+	"id": "github/mrc-ide/rrq",
+	"title": "github/mrc-ide/rrq",
+	"url": " https://rseng.github.io/software/repository/github/mrc-ide/rrq",
+	"content": ":runner::runner::runner: Lightweight Redis queues"
 	},
-	"github/jtschindler/sculptor": {
-	"id": "github/jtschindler/sculptor",
-	"title": "github/jtschindler/sculptor",
-	"url": " https://rseng.github.io/software/repository/github/jtschindler/sculptor",
-	"content": "Sculptor - Interactive modeling of (electromagnetic) astronomical spectra."
+	"github/mrc-ide/ring": {
+	"id": "github/mrc-ide/ring",
+	"title": "github/mrc-ide/ring",
+	"url": " https://rseng.github.io/software/repository/github/mrc-ide/ring",
+	"content": ":ring: Ring buffers"
 	},
-	"github/aibhleog/baryon-sweep": {
-	"id": "github/aibhleog/baryon-sweep",
-	"title": "github/aibhleog/baryon-sweep",
-	"url": " https://rseng.github.io/software/repository/github/aibhleog/baryon-sweep",
-	"content": "a custom outlier rejection algorithm for JWST/NIRSpec IFS data, described in Hutchison et al. (submitted to PASP)"
+	"github/mrc-ide/covid19-forecasts-orderly": {
+	"id": "github/mrc-ide/covid19-forecasts-orderly",
+	"title": "github/mrc-ide/covid19-forecasts-orderly",
+	"url": " https://rseng.github.io/software/repository/github/mrc-ide/covid19-forecasts-orderly",
+	"content": "None"
 	},
-	"github/vicruiser/3Dmapper": {
-	"id": "github/vicruiser/3Dmapper",
-	"title": "github/vicruiser/3Dmapper",
-	"url": " https://rseng.github.io/software/repository/github/vicruiser/3Dmapper",
-	"content": "Map genetic variants and protein positions to protein interfaces in 3D"
+	"github/mrc-ide/EpiEstim": {
+	"id": "github/mrc-ide/EpiEstim",
+	"title": "github/mrc-ide/EpiEstim",
+	"url": " https://rseng.github.io/software/repository/github/mrc-ide/EpiEstim",
+	"content": "A tool to estimate time varying instantaneous reproduction number during epidemics"
 	},
-	"github/lnasellentin/DALI": {
-	"id": "github/lnasellentin/DALI",
-	"title": "github/lnasellentin/DALI",
-	"url": " https://rseng.github.io/software/repository/github/lnasellentin/DALI",
-	"content": "Non-Gaussian Likelihood Approximations"
+	"github/mrc-ide/individual": {
+	"id": "github/mrc-ide/individual",
+	"title": "github/mrc-ide/individual",
+	"url": " https://rseng.github.io/software/repository/github/mrc-ide/individual",
+	"content": "R Package for individual based epidemiological models"
 	},
-	"github/nboley/idr": {
-	"id": "github/nboley/idr",
-	"title": "github/nboley/idr",
-	"url": " https://rseng.github.io/software/repository/github/nboley/idr",
-	"content": "IDR "
+	"github/guilledufort/EnanoFASTQ": {
+	"id": "github/guilledufort/EnanoFASTQ",
+	"title": "github/guilledufort/EnanoFASTQ",
+	"url": " https://rseng.github.io/software/repository/github/guilledufort/EnanoFASTQ",
+	"content": "A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files."
 	},
-	"github/CollinErickson/GauPro": {
-	"id": "github/CollinErickson/GauPro",
-	"title": "github/CollinErickson/GauPro",
-	"url": " https://rseng.github.io/software/repository/github/CollinErickson/GauPro",
-	"content": "R package for Gaussian process modeling"
+	"github/guilledufort/EMVC-2": {
+	"id": "github/guilledufort/EMVC-2",
+	"title": "github/guilledufort/EMVC-2",
+	"url": " https://rseng.github.io/software/repository/github/guilledufort/EMVC-2",
+	"content": "An efficient SNV variant caller based on the expectation maximization algorithm. EMVC-2 is implemented in C and uses a python wrapper."
 	},
-	"github/genomehubs/goat-cli": {
-	"id": "github/genomehubs/goat-cli",
-	"title": "github/genomehubs/goat-cli",
-	"url": " https://rseng.github.io/software/repository/github/genomehubs/goat-cli",
-	"content": "Command Line Interface for Genomes on a Tree."
+	"github/wtsi-hpag/HiLine": {
+	"id": "github/wtsi-hpag/HiLine",
+	"title": "github/wtsi-hpag/HiLine",
+	"url": " https://rseng.github.io/software/repository/github/wtsi-hpag/HiLine",
+	"content": "HiC alignment and classification pipeline"
 	},
-	"github/ruiying-ocean/cgeniepy": {
-	"id": "github/ruiying-ocean/cgeniepy",
-	"title": "github/ruiying-ocean/cgeniepy",
-	"url": " https://rseng.github.io/software/repository/github/ruiying-ocean/cgeniepy",
-	"content": "A Python package for analysing the cGENIE model output"
+	"github/jamescasbon/PyVCF": {
+	"id": "github/jamescasbon/PyVCF",
+	"title": "github/jamescasbon/PyVCF",
+	"url": " https://rseng.github.io/software/repository/github/jamescasbon/PyVCF",
+	"content": "A Variant Call Format reader for Python."
 	},
-	"github/AntonelliLab/seqcap_processor": {
-	"id": "github/AntonelliLab/seqcap_processor",
-	"title": "github/AntonelliLab/seqcap_processor",
-	"url": " https://rseng.github.io/software/repository/github/AntonelliLab/seqcap_processor",
-	"content": "Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics"
+	"github/andr1976/HydDown": {
+	"id": "github/andr1976/HydDown",
+	"title": "github/andr1976/HydDown",
+	"url": " https://rseng.github.io/software/repository/github/andr1976/HydDown",
+	"content": "Hydrogen (or other pure gas phase species) depressurization calculations"
 	},
-	"github/TeamLEGWORK/LEGWORK": {
-	"id": "github/TeamLEGWORK/LEGWORK",
-	"title": "github/TeamLEGWORK/LEGWORK",
-	"url": " https://rseng.github.io/software/repository/github/TeamLEGWORK/LEGWORK",
-	"content": "simple package for gravitational wave calculations "
+	"github/mrirecon/view": {
+	"id": "github/mrirecon/view",
+	"title": "github/mrirecon/view",
+	"url": " https://rseng.github.io/software/repository/github/mrirecon/view",
+	"content": "Image Viewer for BART"
 	},
-	"github/FireflySpectra/firefly_release": {
-	"id": "github/FireflySpectra/firefly_release",
-	"title": "github/FireflySpectra/firefly_release",
-	"url": " https://rseng.github.io/software/repository/github/FireflySpectra/firefly_release",
-	"content": "Firefly, a full spectral fitting code. This repository contains the main code and examples on how to use it."
+	"github/mrirecon/bart": {
+	"id": "github/mrirecon/bart",
+	"title": "github/mrirecon/bart",
+	"url": " https://rseng.github.io/software/repository/github/mrirecon/bart",
+	"content": "BART: Toolbox for Computational Magnetic Resonance Imaging"
 	},
-	"github/JuliaOpt/JuMP.jl": {
-	"id": "github/JuliaOpt/JuMP.jl",
-	"title": "github/JuliaOpt/JuMP.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaOpt/JuMP.jl",
-	"content": "Modeling language for Mathematical Optimization (linear, mixed-integer, conic, semidefinite, nonlinear)"
+	"github/SynthSys/pyOmeroUpload": {
+	"id": "github/SynthSys/pyOmeroUpload",
+	"title": "github/SynthSys/pyOmeroUpload",
+	"url": " https://rseng.github.io/software/repository/github/SynthSys/pyOmeroUpload",
+	"content": "Project for uploading local file structure into OMERO database"
 	},
-	"github/Azeret/galIMF": {
-	"id": "github/Azeret/galIMF",
-	"title": "github/Azeret/galIMF",
-	"url": " https://rseng.github.io/software/repository/github/Azeret/galIMF",
-	"content": "Based on : Yan, Jerabkova and Kroupa (2017, A&amp;A) and Yan, Jerabkova, Kroupa and Vazdekis (2019, A&amp;A): a Python3 module for computing the galaxy-wide initiall stellar mass function by integrating over a whole galaxy, parametrised by star formation rate and metallicity. "
+	"github/daniellefenech/SERPent": {
+	"id": "github/daniellefenech/SERPent",
+	"title": "github/daniellefenech/SERPent",
+	"url": " https://rseng.github.io/software/repository/github/daniellefenech/SERPent",
+	"content": "RFI mitigation software"
 	},
-	"github/cbrnr/sigviewer": {
-	"id": "github/cbrnr/sigviewer",
-	"title": "github/cbrnr/sigviewer",
-	"url": " https://rseng.github.io/software/repository/github/cbrnr/sigviewer",
-	"content": "SigViewer is a viewing application for biosignals."
+	"github/guangtunbenzhu/NonnegMFPy": {
+	"id": "github/guangtunbenzhu/NonnegMFPy",
+	"title": "github/guangtunbenzhu/NonnegMFPy",
+	"url": " https://rseng.github.io/software/repository/github/guangtunbenzhu/NonnegMFPy",
+	"content": "Vectorized Nonnegative Matrix Factorization with heteroscedastic uncertainties and missing data"
 	},
-	"github/sebhoof/SolarAxionFlux": {
-	"id": "github/sebhoof/SolarAxionFlux",
-	"title": "github/sebhoof/SolarAxionFlux",
-	"url": " https://rseng.github.io/software/repository/github/sebhoof/SolarAxionFlux",
-	"content": "A C++/Python library for calculating the solar axion flux for different solar models and opacity codes."
+	"github/guangtunbenzhu/SetCoverPy": {
+	"id": "github/guangtunbenzhu/SetCoverPy",
+	"title": "github/guangtunbenzhu/SetCoverPy",
+	"url": " https://rseng.github.io/software/repository/github/guangtunbenzhu/SetCoverPy",
+	"content": "A heuristic solver for the set cover problem"
 	},
-	"github/athulpg007/AMAT": {
-	"id": "github/athulpg007/AMAT",
-	"title": "github/athulpg007/AMAT",
-	"url": " https://rseng.github.io/software/repository/github/athulpg007/AMAT",
-	"content": "Home of the Aerocapture Mission Analysis Tool (AMAT). For project documentation visit:"
+	"github/harrispopgen/mutyper": {
+	"id": "github/harrispopgen/mutyper",
+	"title": "github/harrispopgen/mutyper",
+	"url": " https://rseng.github.io/software/repository/github/harrispopgen/mutyper",
+	"content": "Ancestral k-mer mutation types for SNP data"
 	},
-	"github/ucl-exoplanets/ExoTETHyS": {
-	"id": "github/ucl-exoplanets/ExoTETHyS",
-	"title": "github/ucl-exoplanets/ExoTETHyS",
-	"url": " https://rseng.github.io/software/repository/github/ucl-exoplanets/ExoTETHyS",
+	"github/PolymathicAI/AstroCLIP": {
+	"id": "github/PolymathicAI/AstroCLIP",
+	"title": "github/PolymathicAI/AstroCLIP",
+	"url": " https://rseng.github.io/software/repository/github/PolymathicAI/AstroCLIP",
+	"content": "Multimodal contrastive pretraining for astronomical data"
+	},
+	"github/GBLille/MassiveFold": {
+	"id": "github/GBLille/MassiveFold",
+	"title": "github/GBLille/MassiveFold",
+	"url": " https://rseng.github.io/software/repository/github/GBLille/MassiveFold",
 	"content": "None"
 	},
-	"github/ucl-exoplanets/TauREx3_public": {
-	"id": "github/ucl-exoplanets/TauREx3_public",
-	"title": "github/ucl-exoplanets/TauREx3_public",
-	"url": " https://rseng.github.io/software/repository/github/ucl-exoplanets/TauREx3_public",
-	"content": "Public release of TauREx3"
+	"github/smaret/thindisk": {
+	"id": "github/smaret/thindisk",
+	"title": "github/smaret/thindisk",
+	"url": " https://rseng.github.io/software/repository/github/smaret/thindisk",
+	"content": "Compute the line emission from a geometrically thin protoplanetary disk"
 	},
-	"github/ucl-exoplanets/pylightcurve": {
-	"id": "github/ucl-exoplanets/pylightcurve",
-	"title": "github/ucl-exoplanets/pylightcurve",
-	"url": " https://rseng.github.io/software/repository/github/ucl-exoplanets/pylightcurve",
-	"content": "A python package for modeling and analysing transit light-curves."
+	"github/smaret/astrochem": {
+	"id": "github/smaret/astrochem",
+	"title": "github/smaret/astrochem",
+	"url": " https://rseng.github.io/software/repository/github/smaret/astrochem",
+	"content": "A code to compute the abundances of chemical species in the interstellar medium"
 	},
-	"github/ucl-exoplanets/ExoGAN_public": {
-	"id": "github/ucl-exoplanets/ExoGAN_public",
-	"title": "github/ucl-exoplanets/ExoGAN_public",
-	"url": " https://rseng.github.io/software/repository/github/ucl-exoplanets/ExoGAN_public",
-	"content": "None"
+	"github/MLMI2-CSSI/foundry": {
+	"id": "github/MLMI2-CSSI/foundry",
+	"title": "github/MLMI2-CSSI/foundry",
+	"url": " https://rseng.github.io/software/repository/github/MLMI2-CSSI/foundry",
+	"content": "Simplifying the discovery and usage of machine-learning ready datasets in materials science and chemistry"
 	},
-	"github/intake/intake": {
-	"id": "github/intake/intake",
-	"title": "github/intake/intake",
-	"url": " https://rseng.github.io/software/repository/github/intake/intake",
-	"content": "Intake is a lightweight package for finding, investigating, loading and disseminating data."
+	"github/kwkx/IPRP": {
+	"id": "github/kwkx/IPRP",
+	"title": "github/kwkx/IPRP",
+	"url": " https://rseng.github.io/software/repository/github/kwkx/IPRP",
+	"content": "The implement of IPRP and related nomograms."
 	},
-	"github/JSB-UCLA/scPNMF": {
-	"id": "github/JSB-UCLA/scPNMF",
-	"title": "github/JSB-UCLA/scPNMF",
-	"url": " https://rseng.github.io/software/repository/github/JSB-UCLA/scPNMF",
-	"content": "None"
+	"github/ksahlin/strobealign": {
+	"id": "github/ksahlin/strobealign",
+	"title": "github/ksahlin/strobealign",
+	"url": " https://rseng.github.io/software/repository/github/ksahlin/strobealign",
+	"content": "Aligns short reads using dynamic seed size with strobemers"
 	},
-	"github/TheMillerLab/genetex": {
-	"id": "github/TheMillerLab/genetex",
-	"title": "github/TheMillerLab/genetex",
-	"url": " https://rseng.github.io/software/repository/github/TheMillerLab/genetex",
-	"content": "None"
+	"github/nathanael-fijalkow/DeepSynth": {
+	"id": "github/nathanael-fijalkow/DeepSynth",
+	"title": "github/nathanael-fijalkow/DeepSynth",
+	"url": " https://rseng.github.io/software/repository/github/nathanael-fijalkow/DeepSynth",
+	"content": "General-purpose program synthesiser"
 	},
-	"github/PSims/BayesEoR": {
-	"id": "github/PSims/BayesEoR",
-	"title": "github/PSims/BayesEoR",
-	"url": " https://rseng.github.io/software/repository/github/PSims/BayesEoR",
-	"content": "Code to estimate the power spectrum of redshifted 21-cm emission from interferometric observations, within a Bayesian forward modelling framework."
+	"github/ryansmcgee/seirsplus": {
+	"id": "github/ryansmcgee/seirsplus",
+	"title": "github/ryansmcgee/seirsplus",
+	"url": " https://rseng.github.io/software/repository/github/ryansmcgee/seirsplus",
+	"content": "Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing."
 	},
-	"github/mehdirezaie/SYSNet": {
-	"id": "github/mehdirezaie/SYSNet",
-	"title": "github/mehdirezaie/SYSNet",
-	"url": " https://rseng.github.io/software/repository/github/mehdirezaie/SYSNet",
-	"content": "End-to-End pipeline for Neural Network modeling of imaging systematics in Galaxy Surveys"
+	"github/ConnorStoneAstro/AutoProf": {
+	"id": "github/ConnorStoneAstro/AutoProf",
+	"title": "github/ConnorStoneAstro/AutoProf",
+	"url": " https://rseng.github.io/software/repository/github/ConnorStoneAstro/AutoProf",
+	"content": "Automatic Isophotal solutions for galaxy images"
 	},
 	"github/ArgonneCPAC/dsps": {
 	"id": "github/ArgonneCPAC/dsps",
@@ -14001,1835 +13599,1859 @@
 	"url": " https://rseng.github.io/software/repository/github/ArgonneCPAC/diffmah",
 	"content": "Differentiable models of halo and galaxy formation history"
 	},
-	"github/griffithlab/regtools": {
-	"id": "github/griffithlab/regtools",
-	"title": "github/griffithlab/regtools",
-	"url": " https://rseng.github.io/software/repository/github/griffithlab/regtools",
-	"content": "Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression."
-	},
-	"github/libgamera/GAMERA": {
-	"id": "github/libgamera/GAMERA",
-	"title": "github/libgamera/GAMERA",
-	"url": " https://rseng.github.io/software/repository/github/libgamera/GAMERA",
-	"content": "A C++/python library for source modeling in gamma astronomy"
+	"github/sjvrijn/mf2": {
+	"id": "github/sjvrijn/mf2",
+	"title": "github/sjvrijn/mf2",
+	"url": " https://rseng.github.io/software/repository/github/sjvrijn/mf2",
+	"content": "Collection of Multi-Fidelity benchmark functions"
 	},
-	"github/dgrin1/axionCAMB": {
-	"id": "github/dgrin1/axionCAMB",
-	"title": "github/dgrin1/axionCAMB",
-	"url": " https://rseng.github.io/software/repository/github/dgrin1/axionCAMB",
+	"github/msaland/THInCR-Suite": {
+	"id": "github/msaland/THInCR-Suite",
+	"title": "github/msaland/THInCR-Suite",
+	"url": " https://rseng.github.io/software/repository/github/msaland/THInCR-Suite",
 	"content": "None"
 	},
-	"github/regonzar/paravt": {
-	"id": "github/regonzar/paravt",
-	"title": "github/regonzar/paravt",
-	"url": " https://rseng.github.io/software/repository/github/regonzar/paravt",
-	"content": "PARAVT: Parallel Voronoi Tessellation"
+	"github/AlgoLab/shark": {
+	"id": "github/AlgoLab/shark",
+	"title": "github/AlgoLab/shark",
+	"url": " https://rseng.github.io/software/repository/github/AlgoLab/shark",
+	"content": "Mapping-free filtering of irrelevant RNA-Seq reads"
 	},
-	"github/Liltsliverfish/A-time-series-reconstruction-method-of-massive-astronomical-catalogues-based-on-Spark": {
-	"id": "github/Liltsliverfish/A-time-series-reconstruction-method-of-massive-astronomical-catalogues-based-on-Spark",
-	"title": "github/Liltsliverfish/A-time-series-reconstruction-method-of-massive-astronomical-catalogues-based-on-Spark",
-	"url": " https://rseng.github.io/software/repository/github/Liltsliverfish/A-time-series-reconstruction-method-of-massive-astronomical-catalogues-based-on-Spark",
-	"content": "A method for time-series reconstruction of massive astronomical catalogues."
+	"github/desihub/desitarget": {
+	"id": "github/desihub/desitarget",
+	"title": "github/desihub/desitarget",
+	"url": " https://rseng.github.io/software/repository/github/desihub/desitarget",
+	"content": "DESI Targeting"
 	},
-	"github/CodeEagle22/SIRITVIS": {
-	"id": "github/CodeEagle22/SIRITVIS",
-	"title": "github/CodeEagle22/SIRITVIS",
-	"url": " https://rseng.github.io/software/repository/github/CodeEagle22/SIRITVIS",
-	"content": "None"
+	"github/desihub/fastspecfit": {
+	"id": "github/desihub/fastspecfit",
+	"title": "github/desihub/fastspecfit",
+	"url": " https://rseng.github.io/software/repository/github/desihub/fastspecfit",
+	"content": "Fast (simple) spectral synthesis and emission-line fitting of DESI spectra."
 	},
-	"github/beebdev/HARU": {
-	"id": "github/beebdev/HARU",
-	"title": "github/beebdev/HARU",
-	"url": " https://rseng.github.io/software/repository/github/beebdev/HARU",
-	"content": "Hardware Accelerated Read Until"
+	"github/qianlivan/RPPPS": {
+	"id": "github/qianlivan/RPPPS",
+	"title": "github/qianlivan/RPPPS",
+	"url": " https://rseng.github.io/software/repository/github/qianlivan/RPPPS",
+	"content": "None"
 	},
-	"github/Ensembl/WiggleTools": {
-	"id": "github/Ensembl/WiggleTools",
-	"title": "github/Ensembl/WiggleTools",
-	"url": " https://rseng.github.io/software/repository/github/Ensembl/WiggleTools",
-	"content": "Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency"
+	"github/USEPA/harmonize-wq": {
+	"id": "github/USEPA/harmonize-wq",
+	"title": "github/USEPA/harmonize-wq",
+	"url": " https://rseng.github.io/software/repository/github/USEPA/harmonize-wq",
+	"content": "Standardize, clean, and wrangle Water Quality Portal data into more analytic-ready formats"
 	},
-	"github/Ensembl/ensembl-vep": {
-	"id": "github/Ensembl/ensembl-vep",
-	"title": "github/Ensembl/ensembl-vep",
-	"url": " https://rseng.github.io/software/repository/github/Ensembl/ensembl-vep",
-	"content": "The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants"
+	"github/USEPA/nsink": {
+	"id": "github/USEPA/nsink",
+	"title": "github/USEPA/nsink",
+	"url": " https://rseng.github.io/software/repository/github/USEPA/nsink",
+	"content": "None"
 	},
-	"github/Merck/BioPhi": {
-	"id": "github/Merck/BioPhi",
-	"title": "github/Merck/BioPhi",
-	"url": " https://rseng.github.io/software/repository/github/Merck/BioPhi",
-	"content": "BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design."
+	"github/USEPA/SSN2": {
+	"id": "github/USEPA/SSN2",
+	"title": "github/USEPA/SSN2",
+	"url": " https://rseng.github.io/software/repository/github/USEPA/SSN2",
+	"content": "SSN2: Spatial Modeling on Stream Networks in R"
 	},
-	"github/Merck/pkglite": {
-	"id": "github/Merck/pkglite",
-	"title": "github/Merck/pkglite",
-	"url": " https://rseng.github.io/software/repository/github/Merck/pkglite",
-	"content": "Compact Package Representations"
+	"github/Julian/jsonschema": {
+	"id": "github/Julian/jsonschema",
+	"title": "github/Julian/jsonschema",
+	"url": " https://rseng.github.io/software/repository/github/Julian/jsonschema",
+	"content": "An(other) implementation of JSON Schema for Python"
 	},
-	"github/Peppags/CNN-SVR": {
-	"id": "github/Peppags/CNN-SVR",
-	"title": "github/Peppags/CNN-SVR",
-	"url": " https://rseng.github.io/software/repository/github/Peppags/CNN-SVR",
-	"content": "CNN-SVR: A deep learning approach for predicting CRISPR/Cas9 guide RNA on-target activity"
+	"github/prajwel/curvit": {
+	"id": "github/prajwel/curvit",
+	"title": "github/prajwel/curvit",
+	"url": " https://rseng.github.io/software/repository/github/prajwel/curvit",
+	"content": "Create light curves from UVIT data."
 	},
-	"github/hfarias/mask_galaxy": {
-	"id": "github/hfarias/mask_galaxy",
-	"title": "github/hfarias/mask_galaxy",
-	"url": " https://rseng.github.io/software/repository/github/hfarias/mask_galaxy",
-	"content": "Morphological segmentation of Galaxies"
+	"github/smandal97/Sprout": {
+	"id": "github/smandal97/Sprout",
+	"title": "github/smandal97/Sprout",
+	"url": " https://rseng.github.io/software/repository/github/smandal97/Sprout",
+	"content": "Sprout is a finite volume hydro code based on the moving mesh approach. It uses a simple expanding Cartesian grid to track outflows for several orders of magnitudes in expansion."
 	},
-	"github/locasto/libdisorder": {
-	"id": "github/locasto/libdisorder",
-	"title": "github/locasto/libdisorder",
-	"url": " https://rseng.github.io/software/repository/github/locasto/libdisorder",
-	"content": "A simple C library for entropy measurement of byte streams and other data."
+	"github/FastMLC/fMLC": {
+	"id": "github/FastMLC/fMLC",
+	"title": "github/FastMLC/fMLC",
+	"url": " https://rseng.github.io/software/repository/github/FastMLC/fMLC",
+	"content": "None"
 	},
-	"github/ARC-OPT/wbc": {
-	"id": "github/ARC-OPT/wbc",
-	"title": "github/ARC-OPT/wbc",
-	"url": " https://rseng.github.io/software/repository/github/ARC-OPT/wbc",
-	"content": "C++ library for optimization-based control of redundant robots"
+	"github/OttoStruve/muler": {
+	"id": "github/OttoStruve/muler",
+	"title": "github/OttoStruve/muler",
+	"url": " https://rseng.github.io/software/repository/github/OttoStruve/muler",
+	"content": "A Python package for working with pipeline-produced spectra from IGRINS, HPF, and Keck NIRSPEC"
 	},
-	"github/zgazak/TAP": {
-	"id": "github/zgazak/TAP",
-	"title": "github/zgazak/TAP",
-	"url": " https://rseng.github.io/software/repository/github/zgazak/TAP",
-	"content": "Transit Analysis Package for IDL"
+	"github/ablab/TandemTools": {
+	"id": "github/ablab/TandemTools",
+	"title": "github/ablab/TandemTools",
+	"url": " https://rseng.github.io/software/repository/github/ablab/TandemTools",
+	"content": "Tool for assessing/improving assembly quality in extra-long tandem repeats"
 	},
-	"github/dkirkby/gphist": {
-	"id": "github/dkirkby/gphist",
-	"title": "github/dkirkby/gphist",
-	"url": " https://rseng.github.io/software/repository/github/dkirkby/gphist",
-	"content": "Cosmological expansion history inference using Gaussian processes"
+	"github/ablab/nerpa": {
+	"id": "github/ablab/nerpa",
+	"title": "github/ablab/nerpa",
+	"url": " https://rseng.github.io/software/repository/github/ablab/nerpa",
+	"content": "None"
 	},
-	"github/tariqdaouda/CAMAP": {
-	"id": "github/tariqdaouda/CAMAP",
-	"title": "github/tariqdaouda/CAMAP",
-	"url": " https://rseng.github.io/software/repository/github/tariqdaouda/CAMAP",
-	"content": "Codon Arrangement MAP Predictor, predicting MHC-I Associated Peptides presentation form mRNA"
+	"github/ablab/spades": {
+	"id": "github/ablab/spades",
+	"title": "github/ablab/spades",
+	"url": " https://rseng.github.io/software/repository/github/ablab/spades",
+	"content": "SPAdes Genome Assembler"
 	},
-	"github/catherinezucker/radfil": {
-	"id": "github/catherinezucker/radfil",
-	"title": "github/catherinezucker/radfil",
-	"url": " https://rseng.github.io/software/repository/github/catherinezucker/radfil",
-	"content": "Building Radial Density Profiles for Interstellar Filaments"
+	"github/HUST-NingKang-Lab/ONN4MST": {
+	"id": "github/HUST-NingKang-Lab/ONN4MST",
+	"title": "github/HUST-NingKang-Lab/ONN4MST",
+	"url": " https://rseng.github.io/software/repository/github/HUST-NingKang-Lab/ONN4MST",
+	"content": "Ontology-aware Neural Network for Mircobiome Data Mining!"
 	},
-	"github/dbosul/CWITools": {
-	"id": "github/dbosul/CWITools",
-	"title": "github/dbosul/CWITools",
-	"url": " https://rseng.github.io/software/repository/github/dbosul/CWITools",
-	"content": "Tools for Cosmic Web Imager Data"
+	"github/horovod/horovod": {
+	"id": "github/horovod/horovod",
+	"title": "github/horovod/horovod",
+	"url": " https://rseng.github.io/software/repository/github/horovod/horovod",
+	"content": "Distributed training framework for TensorFlow, Keras, PyTorch, and Apache MXNet."
 	},
-	"github/ntveem/sterile-dm": {
-	"id": "github/ntveem/sterile-dm",
-	"title": "github/ntveem/sterile-dm",
-	"url": " https://rseng.github.io/software/repository/github/ntveem/sterile-dm",
-	"content": "A program to follow the production of sterile neutrino dark matter"
+	"github/stillwater-sc/universal": {
+	"id": "github/stillwater-sc/universal",
+	"title": "github/stillwater-sc/universal",
+	"url": " https://rseng.github.io/software/repository/github/stillwater-sc/universal",
+	"content": "Large collection of number systems providing custom arithmetic and mixed-precision algorithms for AI, Machine Learning, Computer Vision, Signal Processing, CAE, EDA, control, optimization, estimation, and approximation."
 	},
-	"github/ConnorDonegan/geostan": {
-	"id": "github/ConnorDonegan/geostan",
-	"title": "github/ConnorDonegan/geostan",
-	"url": " https://rseng.github.io/software/repository/github/ConnorDonegan/geostan",
-	"content": "Bayesian spatial analysis"
+	"github/smithlabcode/preseq": {
+	"id": "github/smithlabcode/preseq",
+	"title": "github/smithlabcode/preseq",
+	"url": " https://rseng.github.io/software/repository/github/smithlabcode/preseq",
+	"content": "Software for predicting library complexity and genome coverage in high-throughput sequencing."
 	},
-	"github/abeelen/powspec": {
-	"id": "github/abeelen/powspec",
-	"title": "github/abeelen/powspec",
-	"url": " https://rseng.github.io/software/repository/github/abeelen/powspec",
-	"content": "Power and cross spectral density of 2D arrays"
+	"github/smithlabcode/falco": {
+	"id": "github/smithlabcode/falco",
+	"title": "github/smithlabcode/falco",
+	"url": " https://rseng.github.io/software/repository/github/smithlabcode/falco",
+	"content": "A C++ drop-in replacement of FastQC to assess the quality of sequence read data"
 	},
-	"github/wetransform-os/ProMCDA": {
-	"id": "github/wetransform-os/ProMCDA",
-	"title": "github/wetransform-os/ProMCDA",
-	"url": " https://rseng.github.io/software/repository/github/wetransform-os/ProMCDA",
-	"content": "A tool to estimate ranks of alternatives and their uncertainties based on the Multi Criteria Decision Analysis approach."
+	"github/smithlabcode/dnmtools": {
+	"id": "github/smithlabcode/dnmtools",
+	"title": "github/smithlabcode/dnmtools",
+	"url": " https://rseng.github.io/software/repository/github/smithlabcode/dnmtools",
+	"content": "Tools for analyzing DNA methylation data"
 	},
-	"github/astrom-tom/specstack": {
-	"id": "github/astrom-tom/specstack",
-	"title": "github/astrom-tom/specstack",
-	"url": " https://rseng.github.io/software/repository/github/astrom-tom/specstack",
-	"content": "Simple spectral stacking from command line interface"
+	"github/smithlabcode/abismal": {
+	"id": "github/smithlabcode/abismal",
+	"title": "github/smithlabcode/abismal",
+	"url": " https://rseng.github.io/software/repository/github/smithlabcode/abismal",
+	"content": "Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome."
 	},
-	"github/astrom-tom/dfitspy": {
-	"id": "github/astrom-tom/dfitspy",
-	"title": "github/astrom-tom/dfitspy",
-	"url": " https://rseng.github.io/software/repository/github/astrom-tom/dfitspy",
-	"content": "None"
+	"github/zblz/naima": {
+	"id": "github/zblz/naima",
+	"title": "github/zblz/naima",
+	"url": " https://rseng.github.io/software/repository/github/zblz/naima",
+	"content": "Derivation of non-thermal particle distributions through MCMC spectral fitting"
 	},
-	"github/nye17/javelin": {
-	"id": "github/nye17/javelin",
-	"title": "github/nye17/javelin",
-	"url": " https://rseng.github.io/software/repository/github/nye17/javelin",
-	"content": "JAVELIN is now working under Python 3!"
+	"github/agerada/AIgarMIC": {
+	"id": "github/agerada/AIgarMIC",
+	"title": "github/agerada/AIgarMIC",
+	"url": " https://rseng.github.io/software/repository/github/agerada/AIgarMIC",
+	"content": "AIgarMIC – machine-learning assisted agar dilution software"
 	},
-	"github/saopicc/killMS": {
-	"id": "github/saopicc/killMS",
-	"title": "github/saopicc/killMS",
-	"url": " https://rseng.github.io/software/repository/github/saopicc/killMS",
-	"content": "Package for direction dependent calibration"
+	"github/18parkky/NanoMnT": {
+	"id": "github/18parkky/NanoMnT",
+	"title": "github/18parkky/NanoMnT",
+	"url": " https://rseng.github.io/software/repository/github/18parkky/NanoMnT",
+	"content": "Python package for analyzing STR from ONT data"
 	},
-	"github/saopicc/DDFacet": {
-	"id": "github/saopicc/DDFacet",
-	"title": "github/saopicc/DDFacet",
-	"url": " https://rseng.github.io/software/repository/github/saopicc/DDFacet",
-	"content": "DDFacet Imaging Project"
+	"github/AMReX-Astro/wdmerger": {
+	"id": "github/AMReX-Astro/wdmerger",
+	"title": "github/AMReX-Astro/wdmerger",
+	"url": " https://rseng.github.io/software/repository/github/AMReX-Astro/wdmerger",
+	"content": "A software package for simulating white dwarf mergers with CASTRO"
 	},
-	"github/chrishales/pieflag": {
-	"id": "github/chrishales/pieflag",
-	"title": "github/chrishales/pieflag",
-	"url": " https://rseng.github.io/software/repository/github/chrishales/pieflag",
-	"content": "CASA task to flag bad data by drawing upon statistics from reference channels in bandpass-calibrated data"
+	"github/AMReX-Astro/Castro": {
+	"id": "github/AMReX-Astro/Castro",
+	"title": "github/AMReX-Astro/Castro",
+	"url": " https://rseng.github.io/software/repository/github/AMReX-Astro/Castro",
+	"content": "Castro (Compressible Astrophysics): An adaptive mesh, astrophysical compressible (radiation-, magneto-)  hydrodynamics simulation code for massively parallel CPU and GPU architectures."
 	},
-	"github/soilwater/crnpy": {
-	"id": "github/soilwater/crnpy",
-	"title": "github/soilwater/crnpy",
-	"url": " https://rseng.github.io/software/repository/github/soilwater/crnpy",
-	"content": "A Python toolbox for handling common tasks with cosmic-ray neutron probes"
+	"github/AMReX-Astro/MAESTROeX": {
+	"id": "github/AMReX-Astro/MAESTROeX",
+	"title": "github/AMReX-Astro/MAESTROeX",
+	"url": " https://rseng.github.io/software/repository/github/AMReX-Astro/MAESTROeX",
+	"content": "A C++ low Mach number stellar hydrodynamics code"
 	},
-	"github/nluetts/NoisySignalIntegration.jl": {
-	"id": "github/nluetts/NoisySignalIntegration.jl",
-	"title": "github/nluetts/NoisySignalIntegration.jl",
-	"url": " https://rseng.github.io/software/repository/github/nluetts/NoisySignalIntegration.jl",
-	"content": "None"
+	"github/AMReX-Astro/Nyx": {
+	"id": "github/AMReX-Astro/Nyx",
+	"title": "github/AMReX-Astro/Nyx",
+	"url": " https://rseng.github.io/software/repository/github/AMReX-Astro/Nyx",
+	"content": "An adaptive mesh, N-body hydro cosmological simulation code"
 	},
-	"github/koenderks/jaspAudit": {
-	"id": "github/koenderks/jaspAudit",
-	"title": "github/koenderks/jaspAudit",
-	"url": " https://rseng.github.io/software/repository/github/koenderks/jaspAudit",
-	"content": "The Audit module is developed to facilitate statistical auditing in both Bayesian and classical manifestations. The main feature is a workflow that helps guide auditors through the sampling process. Additionally, there are stand-alone analyses for planning, selecting, and evaluating a sample. The module is based on the R package jfa."
+	"github/3D-e-Chem/sygma": {
+	"id": "github/3D-e-Chem/sygma",
+	"title": "github/3D-e-Chem/sygma",
+	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/sygma",
+	"content": "A python library for prediction of drug metabolites"
 	},
-	"github/PhaseTracer/PhaseTracer": {
-	"id": "github/PhaseTracer/PhaseTracer",
-	"title": "github/PhaseTracer/PhaseTracer",
-	"url": " https://rseng.github.io/software/repository/github/PhaseTracer/PhaseTracer",
-	"content": "PhaseTracer is a C++ software package for mapping out cosmological phases, and potential transitions between them, for Standard Model extensions with any number of scalar fields."
+	"github/3D-e-Chem/knime-pharmacophore": {
+	"id": "github/3D-e-Chem/knime-pharmacophore",
+	"title": "github/3D-e-Chem/knime-pharmacophore",
+	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-pharmacophore",
+	"content": "KNIME nodes to read/write pharmacophore files"
 	},
-	"github/MDU-PHL/abritamr": {
-	"id": "github/MDU-PHL/abritamr",
-	"title": "github/MDU-PHL/abritamr",
-	"url": " https://rseng.github.io/software/repository/github/MDU-PHL/abritamr",
-	"content": "A pipeline for running AMRfinderPlus and collating results into functional classes"
+	"github/3D-e-Chem/knime-sstea": {
+	"id": "github/3D-e-Chem/knime-sstea",
+	"title": "github/3D-e-Chem/knime-sstea",
+	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-sstea",
+	"content": "Knime node to calculate ss-TEA score of sequence alignment and subfamily members."
 	},
-	"github/yatiml/yatiml": {
-	"id": "github/yatiml/yatiml",
-	"title": "github/yatiml/yatiml",
-	"url": " https://rseng.github.io/software/repository/github/yatiml/yatiml",
-	"content": "Python library for YAML type inference, schema checking and syntactic sugar"
+	"github/3D-e-Chem/knime-silicos-it": {
+	"id": "github/3D-e-Chem/knime-silicos-it",
+	"title": "github/3D-e-Chem/knime-silicos-it",
+	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-silicos-it",
+	"content": "KNIME nodes and example workflows for software made by Silicos-it, ie. align-it, shape-it"
 	},
-	"github/etempel/Bisous": {
-	"id": "github/etempel/Bisous",
-	"title": "github/etempel/Bisous",
-	"url": " https://rseng.github.io/software/repository/github/etempel/Bisous",
-	"content": "None"
+	"github/3D-e-Chem/knime-testflow": {
+	"id": "github/3D-e-Chem/knime-testflow",
+	"title": "github/3D-e-Chem/knime-testflow",
+	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-testflow",
+	"content": "Test Knime workflows from a Junit test."
 	},
-	"github/rauschenberger/joinet": {
-	"id": "github/rauschenberger/joinet",
-	"title": "github/rauschenberger/joinet",
-	"url": " https://rseng.github.io/software/repository/github/rauschenberger/joinet",
-	"content": "Multivariate Elastic Net Regression"
+	"github/3D-e-Chem/knime-plants": {
+	"id": "github/3D-e-Chem/knime-plants",
+	"title": "github/3D-e-Chem/knime-plants",
+	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-plants",
+	"content": "KNIME nodes to configure, run and analyze PLANTS protein-ligand docking"
 	},
-	"github/rauschenberger/transreg": {
-	"id": "github/rauschenberger/transreg",
-	"title": "github/rauschenberger/transreg",
-	"url": " https://rseng.github.io/software/repository/github/rauschenberger/transreg",
-	"content": "Transfer learning"
+	"github/3D-e-Chem/3D-e-Chem-VM": {
+	"id": "github/3D-e-Chem/3D-e-Chem-VM",
+	"title": "github/3D-e-Chem/3D-e-Chem-VM",
+	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/3D-e-Chem-VM",
+	"content": "Virtual machine with all software and sample data to run 3D-e-Chem Knime workflows"
 	},
-	"github/sdrastro/NWelch": {
-	"id": "github/sdrastro/NWelch",
-	"title": "github/sdrastro/NWelch",
-	"url": " https://rseng.github.io/software/repository/github/sdrastro/NWelch",
-	"content": "python implementation of Welch&#39;s method for estimating the power spectra, complex cross-spectrum, magnitude-squared coherence, and phase spectrum of unevenly spaced, bivariate time series"
+	"github/3D-e-Chem/knime-kripodb": {
+	"id": "github/3D-e-Chem/knime-kripodb",
+	"title": "github/3D-e-Chem/knime-kripodb",
+	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-kripodb",
+	"content": "Knime node for KripoDB package"
 	},
-	"github/kuenzelab/ENDURE": {
-	"id": "github/kuenzelab/ENDURE",
-	"title": "github/kuenzelab/ENDURE",
-	"url": " https://rseng.github.io/software/repository/github/kuenzelab/ENDURE",
-	"content": "Tool for energy breakdown analysis of protein designs"
+	"github/3D-e-Chem/knime-gpcrdb": {
+	"id": "github/3D-e-Chem/knime-gpcrdb",
+	"title": "github/3D-e-Chem/knime-gpcrdb",
+	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-gpcrdb",
+	"content": "GPCRDB nodes for Knime"
 	},
-	"github/metageni/FOCUS": {
-	"id": "github/metageni/FOCUS",
-	"title": "github/metageni/FOCUS",
-	"url": " https://rseng.github.io/software/repository/github/metageni/FOCUS",
-	"content": "FOCUS: An Agile Profiler for Metagenomic Data"
+	"github/3D-e-Chem/knime-python-wrapper": {
+	"id": "github/3D-e-Chem/knime-python-wrapper",
+	"title": "github/3D-e-Chem/knime-python-wrapper",
+	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-python-wrapper",
+	"content": "Utilities for development of KNIME nodes calling Python scripts."
 	},
-	"github/moritzobenauer/ProjectRaccoon": {
-	"id": "github/moritzobenauer/ProjectRaccoon",
-	"title": "github/moritzobenauer/ProjectRaccoon",
-	"url": " https://rseng.github.io/software/repository/github/moritzobenauer/ProjectRaccoon",
-	"content": "Automated construction of atomistic and coarse-grained models in the PDB format for polymer peptide conjugates."
+	"github/3D-e-Chem/knime-sygma": {
+	"id": "github/3D-e-Chem/knime-sygma",
+	"title": "github/3D-e-Chem/knime-sygma",
+	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-sygma",
+	"content": "KNIME nodes for Sygma"
 	},
-	"github/Jinsl-lab/SDImpute": {
-	"id": "github/Jinsl-lab/SDImpute",
-	"title": "github/Jinsl-lab/SDImpute",
-	"url": " https://rseng.github.io/software/repository/github/Jinsl-lab/SDImpute",
-	"content": "A R package."
+	"github/3D-e-Chem/knime-python-node-archetype": {
+	"id": "github/3D-e-Chem/knime-python-node-archetype",
+	"title": "github/3D-e-Chem/knime-python-node-archetype",
+	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-python-node-archetype",
+	"content": "Knime Python node archetype"
 	},
-	"github/MorgansLab/OSCILOS_Long": {
-	"id": "github/MorgansLab/OSCILOS_Long",
-	"title": "github/MorgansLab/OSCILOS_Long",
-	"url": " https://rseng.github.io/software/repository/github/MorgansLab/OSCILOS_Long",
-	"content": "OSCILOS_long is an open source code for simulating combustion instabilities. OSCILOS_lite was developed at Imperial College London by Prof. Aimee S. Morgans and co-workers. The code is open source and written in MATLAB."
+	"github/3D-e-Chem/tycho-knime-node-archetype": {
+	"id": "github/3D-e-Chem/tycho-knime-node-archetype",
+	"title": "github/3D-e-Chem/tycho-knime-node-archetype",
+	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/tycho-knime-node-archetype",
+	"content": "Maven archetype for Knime node extension"
 	},
-	"github/RemoteSensingTools/vSmartMOM.jl": {
-	"id": "github/RemoteSensingTools/vSmartMOM.jl",
-	"title": "github/RemoteSensingTools/vSmartMOM.jl",
-	"url": " https://rseng.github.io/software/repository/github/RemoteSensingTools/vSmartMOM.jl",
-	"content": "A full end-to-end modular software suite for radiative transfer and related atmospheric analysis"
+	"github/3D-e-Chem/knime-klifs": {
+	"id": "github/3D-e-Chem/knime-klifs",
+	"title": "github/3D-e-Chem/knime-klifs",
+	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-klifs",
+	"content": "Knime nodes to interact with KLIFS"
 	},
-	"github/CIRADA-Tools/RM-Tools": {
-	"id": "github/CIRADA-Tools/RM-Tools",
-	"title": "github/CIRADA-Tools/RM-Tools",
-	"url": " https://rseng.github.io/software/repository/github/CIRADA-Tools/RM-Tools",
-	"content": "RM-synthesis, RM-clean and QU-fitting on polarised radio spectra"
+	"github/3D-e-Chem/knime-molviewer": {
+	"id": "github/3D-e-Chem/knime-molviewer",
+	"title": "github/3D-e-Chem/knime-molviewer",
+	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/knime-molviewer",
+	"content": "KNIME node which launches a web browser with moleculer viewer powered by webgl"
 	},
-	"github/mofanv/darknetz": {
-	"id": "github/mofanv/darknetz",
-	"title": "github/mofanv/darknetz",
-	"url": " https://rseng.github.io/software/repository/github/mofanv/darknetz",
-	"content": "runs several layers of a deep learning model in TrustZone"
+	"github/3D-e-Chem/kripodb": {
+	"id": "github/3D-e-Chem/kripodb",
+	"title": "github/3D-e-Chem/kripodb",
+	"url": " https://rseng.github.io/software/repository/github/3D-e-Chem/kripodb",
+	"content": "Library to interact with Kripo fragment, fingerprint and similarity data files."
 	},
-	"github/sisl/PyroRL": {
-	"id": "github/sisl/PyroRL",
-	"title": "github/sisl/PyroRL",
-	"url": " https://rseng.github.io/software/repository/github/sisl/PyroRL",
-	"content": "An RL environment made for wildfire evacuation."
+	"github/kmsurrao/reMASTERed": {
+	"id": "github/kmsurrao/reMASTERed",
+	"title": "github/kmsurrao/reMASTERed",
+	"url": " https://rseng.github.io/software/repository/github/kmsurrao/reMASTERed",
+	"content": "Calculate contributions to pseudo-Cl for maps with correlated masks, based on https://arxiv.org/abs/2302.05436"
 	},
-	"github/sisl/POMDPStressTesting.jl": {
-	"id": "github/sisl/POMDPStressTesting.jl",
-	"title": "github/sisl/POMDPStressTesting.jl",
-	"url": " https://rseng.github.io/software/repository/github/sisl/POMDPStressTesting.jl",
-	"content": "Adaptive stress testing of black-box systems within POMDPs.jl"
+	"github/ocean-eddy-cpt/gcm-filters": {
+	"id": "github/ocean-eddy-cpt/gcm-filters",
+	"title": "github/ocean-eddy-cpt/gcm-filters",
+	"url": " https://rseng.github.io/software/repository/github/ocean-eddy-cpt/gcm-filters",
+	"content": "Diffusion-based Spatial Filtering of Gridded Data"
 	},
-	"github/sisl/ExpFamilyPCA.jl": {
-	"id": "github/sisl/ExpFamilyPCA.jl",
-	"title": "github/sisl/ExpFamilyPCA.jl",
-	"url": " https://rseng.github.io/software/repository/github/sisl/ExpFamilyPCA.jl",
-	"content": "A Julia package for exponential family principal component analysis (EPCA)."
+	"github/DrSoulain/PREVIS": {
+	"id": "github/DrSoulain/PREVIS",
+	"title": "github/DrSoulain/PREVIS",
+	"url": " https://rseng.github.io/software/repository/github/DrSoulain/PREVIS",
+	"content": "Python Request Engine for Virtual Interferometric Survey"
 	},
-	"github/sncosmo/sncosmo": {
-	"id": "github/sncosmo/sncosmo",
-	"title": "github/sncosmo/sncosmo",
-	"url": " https://rseng.github.io/software/repository/github/sncosmo/sncosmo",
-	"content": "Python library for supernova cosmology"
+	"github/bluesky/bluesky": {
+	"id": "github/bluesky/bluesky",
+	"title": "github/bluesky/bluesky",
+	"url": " https://rseng.github.io/software/repository/github/bluesky/bluesky",
+	"content": "experiment orchestration and data acquisition"
 	},
-	"github/scipion-em/scipion-em-continuousflex": {
-	"id": "github/scipion-em/scipion-em-continuousflex",
-	"title": "github/scipion-em/scipion-em-continuousflex",
-	"url": " https://rseng.github.io/software/repository/github/scipion-em/scipion-em-continuousflex",
-	"content": "Plugin for continuous conformational flexibility analysis containing HEMNMA, StructMap, HEMNMA-3D and TomoFlow for in vitro and in situ cryo-EM/ET."
+	"github/kboone/avocado": {
+	"id": "github/kboone/avocado",
+	"title": "github/kboone/avocado",
+	"url": " https://rseng.github.io/software/repository/github/kboone/avocado",
+	"content": "Photometric Classification of Astronomical Transients and Variables With Biased Spectroscopic Samples"
 	},
-	"github/RETURN-project/BenchmarkRecovery": {
-	"id": "github/RETURN-project/BenchmarkRecovery",
-	"title": "github/RETURN-project/BenchmarkRecovery",
-	"url": " https://rseng.github.io/software/repository/github/RETURN-project/BenchmarkRecovery",
-	"content": "Benchmarking recovery indicators from remote sensing time series"
+	"github/kboone/parsnip": {
+	"id": "github/kboone/parsnip",
+	"title": "github/kboone/parsnip",
+	"url": " https://rseng.github.io/software/repository/github/kboone/parsnip",
+	"content": "Deep generative modeling of astronomical transient light curves"
 	},
-	"github/kegiljarhus/pyBEMT": {
-	"id": "github/kegiljarhus/pyBEMT",
-	"title": "github/kegiljarhus/pyBEMT",
-	"url": " https://rseng.github.io/software/repository/github/kegiljarhus/pyBEMT",
-	"content": "Implementation of the Blade Element Momentum Theory for turbines and propellers in Python"
+	"github/ToHanwei/Genome2OR": {
+	"id": "github/ToHanwei/Genome2OR",
+	"title": "github/ToHanwei/Genome2OR",
+	"url": " https://rseng.github.io/software/repository/github/ToHanwei/Genome2OR",
+	"content": "Annotate Olfactory receptor CDS from genome"
 	},
-	"github/MLMI2-CSSI/foundry": {
-	"id": "github/MLMI2-CSSI/foundry",
-	"title": "github/MLMI2-CSSI/foundry",
-	"url": " https://rseng.github.io/software/repository/github/MLMI2-CSSI/foundry",
-	"content": "Simplifying the discovery and usage of machine-learning ready datasets in materials science and chemistry"
+	"github/abatten/fruitbat": {
+	"id": "github/abatten/fruitbat",
+	"title": "github/abatten/fruitbat",
+	"url": " https://rseng.github.io/software/repository/github/abatten/fruitbat",
+	"content": "A fast radio burst (FRB) redshift estimation package written in Python."
 	},
-	"github/cnellington/Contextualized": {
-	"id": "github/cnellington/Contextualized",
-	"title": "github/cnellington/Contextualized",
-	"url": " https://rseng.github.io/software/repository/github/cnellington/Contextualized",
-	"content": "An SKLearn-style toolbox for estimating and analyzing models, distributions, and functions with context-specific parameters."
+	"github/MichaelSel/edoJS": {
+	"id": "github/MichaelSel/edoJS",
+	"title": "github/MichaelSel/edoJS",
+	"url": " https://rseng.github.io/software/repository/github/MichaelSel/edoJS",
+	"content": "A set of functions for manipulating musical pitches within a given EDO"
 	},
-	"github/SIOSlab/exodetbox": {
-	"id": "github/SIOSlab/exodetbox",
-	"title": "github/SIOSlab/exodetbox",
-	"url": " https://rseng.github.io/software/repository/github/SIOSlab/exodetbox",
-	"content": "Methods for finding planets sharing a common (s,dmag)"
+	"github/Someone789/galax2d": {
+	"id": "github/Someone789/galax2d",
+	"title": "github/Someone789/galax2d",
+	"url": " https://rseng.github.io/software/repository/github/Someone789/galax2d",
+	"content": "matlab or octave code to compute the 2D stationary solution of the isothermal Euler equations of gas dynamics in a rotating galaxy with a weak bar"
 	},
-	"github/nbarbey/TomograPy": {
-	"id": "github/nbarbey/TomograPy",
-	"title": "github/nbarbey/TomograPy",
-	"url": " https://rseng.github.io/software/repository/github/nbarbey/TomograPy",
-	"content": "Siddon tomography algorithm"
+	"github/Nico-Curti/rFBP": {
+	"id": "github/Nico-Curti/rFBP",
+	"title": "github/Nico-Curti/rFBP",
+	"url": " https://rseng.github.io/software/repository/github/Nico-Curti/rFBP",
+	"content": "Replicated Focusing Belief Propagation algorithm"
 	},
-	"github/galaxy001/pirs": {
-	"id": "github/galaxy001/pirs",
-	"title": "github/galaxy001/pirs",
-	"url": " https://rseng.github.io/software/repository/github/galaxy001/pirs",
-	"content": "profile basd Illumina pair-end Reads Simulator"
+	"github/Xomics/ACTIONdemonstrator_workflow": {
+	"id": "github/Xomics/ACTIONdemonstrator_workflow",
+	"title": "github/Xomics/ACTIONdemonstrator_workflow",
+	"url": " https://rseng.github.io/software/repository/github/Xomics/ACTIONdemonstrator_workflow",
+	"content": "X-omics ACTION demonstrator multi-omics analysis workflow"
 	},
-	"github/cmelab/flowerMD": {
-	"id": "github/cmelab/flowerMD",
-	"title": "github/cmelab/flowerMD",
-	"url": " https://rseng.github.io/software/repository/github/cmelab/flowerMD",
-	"content": "Flexible Library of Organic Workflows and Extensible Recipes for Molecular Dynamics."
+	"github/cdanielmachado/reframed": {
+	"id": "github/cdanielmachado/reframed",
+	"title": "github/cdanielmachado/reframed",
+	"url": " https://rseng.github.io/software/repository/github/cdanielmachado/reframed",
+	"content": "ReFramed: metabolic modeling package"
 	},
-	"github/jdonnert/WVTICs": {
-	"id": "github/jdonnert/WVTICs",
-	"title": "github/jdonnert/WVTICs",
-	"url": " https://rseng.github.io/software/repository/github/jdonnert/WVTICs",
-	"content": "SPH initial conditions using Weighted Voronoi Tesselations"
+	"github/cdanielmachado/carveme": {
+	"id": "github/cdanielmachado/carveme",
+	"title": "github/cdanielmachado/carveme",
+	"url": " https://rseng.github.io/software/repository/github/cdanielmachado/carveme",
+	"content": "CarveMe: genome-scale metabolic model reconstruction"
 	},
-	"github/bempp/bempp-cl": {
-	"id": "github/bempp/bempp-cl",
-	"title": "github/bempp/bempp-cl",
-	"url": " https://rseng.github.io/software/repository/github/bempp/bempp-cl",
-	"content": "A fast Python based just-in-time compiling boundary element library"
+	"github/txopen/histoc": {
+	"id": "github/txopen/histoc",
+	"title": "github/txopen/histoc",
+	"url": " https://rseng.github.io/software/repository/github/txopen/histoc",
+	"content": "Histocompatibility analysis performed by kidney allocation systems for transplantation"
 	},
-	"github/arviz-devs/preliz": {
-	"id": "github/arviz-devs/preliz",
-	"title": "github/arviz-devs/preliz",
-	"url": " https://rseng.github.io/software/repository/github/arviz-devs/preliz",
-	"content": "Tools to help you pick a prior"
+	"github/zizroc/villager": {
+	"id": "github/zizroc/villager",
+	"title": "github/zizroc/villager",
+	"url": " https://rseng.github.io/software/repository/github/zizroc/villager",
+	"content": "villager is an extensible agent based modeling (ABM) framework for the R language. It supports agents, agent aggregations and their associated resources, as well as flexible data management."
 	},
-	"github/arviz-devs/arviz": {
-	"id": "github/arviz-devs/arviz",
-	"title": "github/arviz-devs/arviz",
-	"url": " https://rseng.github.io/software/repository/github/arviz-devs/arviz",
-	"content": "Exploratory analysis of Bayesian models with Python"
+	"github/BioMedIA/MIRTK": {
+	"id": "github/BioMedIA/MIRTK",
+	"title": "github/BioMedIA/MIRTK",
+	"url": " https://rseng.github.io/software/repository/github/BioMedIA/MIRTK",
+	"content": "The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core libraries, and basic command-line tools. Extension packages are hosted by the MIRTK GitHub group at"
 	},
-	"github/panoptes-organization/panoptes": {
-	"id": "github/panoptes-organization/panoptes",
-	"title": "github/panoptes-organization/panoptes",
-	"url": " https://rseng.github.io/software/repository/github/panoptes-organization/panoptes",
-	"content": "Monitor computational workflows in real time"
+	"github/seamusclarke/rjplots": {
+	"id": "github/seamusclarke/rjplots",
+	"title": "github/seamusclarke/rjplots",
+	"url": " https://rseng.github.io/software/repository/github/seamusclarke/rjplots",
+	"content": "A Python package allowing for the automated and objective classification of 2D structures using a moments of inertia based method. This method is a further development of J-plots (https://github.com/SJaffa/Jplots)"
 	},
-	"github/Jesper-Karsten/MBASC": {
-	"id": "github/Jesper-Karsten/MBASC",
-	"title": "github/Jesper-Karsten/MBASC",
-	"url": " https://rseng.github.io/software/repository/github/Jesper-Karsten/MBASC",
-	"content": "None"
+	"github/thomasdenecker/START-R": {
+	"id": "github/thomasdenecker/START-R",
+	"title": "github/thomasdenecker/START-R",
+	"url": " https://rseng.github.io/software/repository/github/thomasdenecker/START-R",
+	"content": "Simple Tool for Analysis of Replication Timing with R"
 	},
-	"github/jianlin-cheng/DRCon": {
-	"id": "github/jianlin-cheng/DRCon",
-	"title": "github/jianlin-cheng/DRCon",
-	"url": " https://rseng.github.io/software/repository/github/jianlin-cheng/DRCon",
-	"content": "Deep dilated convolutional residual neural network for predicting interchain contacts of protein homodimers"
+	"github/cameron314/concurrentqueue": {
+	"id": "github/cameron314/concurrentqueue",
+	"title": "github/cameron314/concurrentqueue",
+	"url": " https://rseng.github.io/software/repository/github/cameron314/concurrentqueue",
+	"content": "A fast multi-producer, multi-consumer lock-free concurrent queue for C++11"
 	},
-	"github/AprilYuge/ResPAN": {
-	"id": "github/AprilYuge/ResPAN",
-	"title": "github/AprilYuge/ResPAN",
-	"url": " https://rseng.github.io/software/repository/github/AprilYuge/ResPAN",
-	"content": "a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction"
+	"github/curl/curl": {
+	"id": "github/curl/curl",
+	"title": "github/curl/curl",
+	"url": " https://rseng.github.io/software/repository/github/curl/curl",
+	"content": "A command line tool and library for transferring data with URL syntax, supporting DICT, FILE, FTP, FTPS, GOPHER, GOPHERS, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, MQTT, POP3, POP3S, RTMP, RTMPS, RTSP, SCP, SFTP, SMB, SMBS, SMTP, SMTPS, TELNET and TFTP. libcurl offers a myriad of powerful features"
 	},
-	"github/hover2pi/SEDkit": {
-	"id": "github/hover2pi/SEDkit",
-	"title": "github/hover2pi/SEDkit",
-	"url": " https://rseng.github.io/software/repository/github/hover2pi/SEDkit",
-	"content": "Spectral energy distribution construction and analysis tools"
+	"github/metaOmics/MetaPath": {
+	"id": "github/metaOmics/MetaPath",
+	"title": "github/metaOmics/MetaPath",
+	"url": " https://rseng.github.io/software/repository/github/metaOmics/MetaPath",
+	"content": "Meta analysis pathway enrichment"
 	},
-	"github/mrazomej/AutoEncoderToolkit.jl": {
-	"id": "github/mrazomej/AutoEncoderToolkit.jl",
-	"title": "github/mrazomej/AutoEncoderToolkit.jl",
-	"url": " https://rseng.github.io/software/repository/github/mrazomej/AutoEncoderToolkit.jl",
-	"content": "Julia package with several functions to train and analyze Autoencoder-based neural networks"
+	"github/ebellm/pyraf-dbsp": {
+	"id": "github/ebellm/pyraf-dbsp",
+	"title": "github/ebellm/pyraf-dbsp",
+	"url": " https://rseng.github.io/software/repository/github/ebellm/pyraf-dbsp",
+	"content": " :telescope: A PyRAF-based reduction pipeline for spectra taken with the Palomar 200-inch Double Spectrograph."
 	},
-	"github/grazianoucci/game": {
-	"id": "github/grazianoucci/game",
-	"title": "github/grazianoucci/game",
-	"url": " https://rseng.github.io/software/repository/github/grazianoucci/game",
-	"content": "GAlaxy Machine learning for Emission lines"
+	"github/dtanoglidis/DeepShadows": {
+	"id": "github/dtanoglidis/DeepShadows",
+	"title": "github/dtanoglidis/DeepShadows",
+	"url": " https://rseng.github.io/software/repository/github/dtanoglidis/DeepShadows",
+	"content": "Repository for the project &#34;DeepShadows: Separating LSBGs from artifacts using Deep Learning&#34;"
 	},
-	"github/grazianoucci/cosmic_variance": {
-	"id": "github/grazianoucci/cosmic_variance",
-	"title": "github/grazianoucci/cosmic_variance",
-	"url": " https://rseng.github.io/software/repository/github/grazianoucci/cosmic_variance",
-	"content": "None"
+	"github/joboog/r2ogs6": {
+	"id": "github/joboog/r2ogs6",
+	"title": "github/joboog/r2ogs6",
+	"url": " https://rseng.github.io/software/repository/github/joboog/r2ogs6",
+	"content": "R-API to the multiphysics simulator OpenGeoSys 6.       THIS IS A MIRROR OF: https://gitlab.opengeosys.org/ogs/tools/r2ogs6"
 	},
-	"github/villrv/SuperRAENN": {
-	"id": "github/villrv/SuperRAENN",
-	"title": "github/villrv/SuperRAENN",
-	"url": " https://rseng.github.io/software/repository/github/villrv/SuperRAENN",
-	"content": "A recurrent autoencoder neural network-based classifier for SN light curves."
+	"github/oscaribv/exotrending": {
+	"id": "github/oscaribv/exotrending",
+	"title": "github/oscaribv/exotrending",
+	"url": " https://rseng.github.io/software/repository/github/oscaribv/exotrending",
+	"content": "A fast and easy-to-use light curve detrending software for exoplanets"
 	},
-	"github/CouncilDataProject/speakerbox": {
-	"id": "github/CouncilDataProject/speakerbox",
-	"title": "github/CouncilDataProject/speakerbox",
-	"url": " https://rseng.github.io/software/repository/github/CouncilDataProject/speakerbox",
-	"content": "Speakerbox: Fine-tune Audio Transformers for speaker identification."
+	"github/oscaribv/pyaneti": {
+	"id": "github/oscaribv/pyaneti",
+	"title": "github/oscaribv/pyaneti",
+	"url": " https://rseng.github.io/software/repository/github/oscaribv/pyaneti",
+	"content": "A multi-planet Radial Velocity and Transit modelling software"
 	},
-	"github/CouncilDataProject/cookiecutter-cdp-deployment": {
-	"id": "github/CouncilDataProject/cookiecutter-cdp-deployment",
-	"title": "github/CouncilDataProject/cookiecutter-cdp-deployment",
-	"url": " https://rseng.github.io/software/repository/github/CouncilDataProject/cookiecutter-cdp-deployment",
-	"content": "Cookiecutter template for creating new CDP instances."
+	"github/oscaribv/citlalicue": {
+	"id": "github/oscaribv/citlalicue",
+	"title": "github/oscaribv/citlalicue",
+	"url": " https://rseng.github.io/software/repository/github/oscaribv/citlalicue",
+	"content": "Create and manipulate stellar light curves!"
 	},
-	"github/mlafarga/raccoon": {
-	"id": "github/mlafarga/raccoon",
-	"title": "github/mlafarga/raccoon",
-	"url": " https://rseng.github.io/software/repository/github/mlafarga/raccoon",
-	"content": "None"
+	"github/skiehl/lcsim": {
+	"id": "github/skiehl/lcsim",
+	"title": "github/skiehl/lcsim",
+	"url": " https://rseng.github.io/software/repository/github/skiehl/lcsim",
+	"content": "Blazar light curve simulation package"
 	},
-	"github/4dn-dcic/pairix": {
-	"id": "github/4dn-dcic/pairix",
-	"title": "github/4dn-dcic/pairix",
-	"url": " https://rseng.github.io/software/repository/github/4dn-dcic/pairix",
-	"content": "1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates"
+	"github/skiehl/wwz": {
+	"id": "github/skiehl/wwz",
+	"title": "github/skiehl/wwz",
+	"url": " https://rseng.github.io/software/repository/github/skiehl/wwz",
+	"content": "Weighted wavelet z-transform (WWZ) analysis package"
 	},
-	"github/ouyang-lab/PRAS": {
-	"id": "github/ouyang-lab/PRAS",
-	"title": "github/ouyang-lab/PRAS",
-	"url": " https://rseng.github.io/software/repository/github/ouyang-lab/PRAS",
-	"content": "PRAS: predicting functional targets of RNA binding proteins based on CLIP-seq peaks"
+	"github/skiehl/polarizationtools": {
+	"id": "github/skiehl/polarizationtools",
+	"title": "github/skiehl/polarizationtools",
+	"url": " https://rseng.github.io/software/repository/github/skiehl/polarizationtools",
+	"content": "Tools to deal with astrophysical polarization data in python3"
 	},
-	"github/jbattat/pep_core": {
-	"id": "github/jbattat/pep_core",
-	"title": "github/jbattat/pep_core",
-	"url": " https://rseng.github.io/software/repository/github/jbattat/pep_core",
-	"content": "PEP: Planetary Ephemeris Program core files"
+	"github/theislab/anndata": {
+	"id": "github/theislab/anndata",
+	"title": "github/theislab/anndata",
+	"url": " https://rseng.github.io/software/repository/github/theislab/anndata",
+	"content": "Annotated data."
 	},
-	"github/cagrikymk/JAX-ReaxFF": {
-	"id": "github/cagrikymk/JAX-ReaxFF",
-	"title": "github/cagrikymk/JAX-ReaxFF",
-	"url": " https://rseng.github.io/software/repository/github/cagrikymk/JAX-ReaxFF",
-	"content": "JAX-ReaxFF: A Gradient Based Framework for Extremely Fast Optimization of Reactive Force Fields"
+	"github/theislab/scvelo": {
+	"id": "github/theislab/scvelo",
+	"title": "github/theislab/scvelo",
+	"url": " https://rseng.github.io/software/repository/github/theislab/scvelo",
+	"content": "RNA Velocity generalized through dynamical modeling"
 	},
-	"github/pytoolz/toolz": {
-	"id": "github/pytoolz/toolz",
-	"title": "github/pytoolz/toolz",
-	"url": " https://rseng.github.io/software/repository/github/pytoolz/toolz",
-	"content": "A functional standard library for Python."
+	"github/theislab/scanpy": {
+	"id": "github/theislab/scanpy",
+	"title": "github/theislab/scanpy",
+	"url": " https://rseng.github.io/software/repository/github/theislab/scanpy",
+	"content": "Single-cell analysis in Python. Scales to &gt;1M cells."
 	},
-	"github/carlosandrepaes/GaPP": {
-	"id": "github/carlosandrepaes/GaPP",
-	"title": "github/carlosandrepaes/GaPP",
-	"url": " https://rseng.github.io/software/repository/github/carlosandrepaes/GaPP",
-	"content": "Gaussian Processes GaPP code auxiliary repository  "
+	"github/theislab/scCODA": {
+	"id": "github/theislab/scCODA",
+	"title": "github/theislab/scCODA",
+	"url": " https://rseng.github.io/software/repository/github/theislab/scCODA",
+	"content": "A Bayesian model for compositional single-cell data analysis"
 	},
-	"github/cadop/seg1d": {
-	"id": "github/cadop/seg1d",
-	"title": "github/cadop/seg1d",
-	"url": " https://rseng.github.io/software/repository/github/cadop/seg1d",
-	"content": "Automated segmentation of one-dimensional (1D) data"
+	"github/IlianPihlajamaa/ModeCouplingTheory.jl": {
+	"id": "github/IlianPihlajamaa/ModeCouplingTheory.jl",
+	"title": "github/IlianPihlajamaa/ModeCouplingTheory.jl",
+	"url": " https://rseng.github.io/software/repository/github/IlianPihlajamaa/ModeCouplingTheory.jl",
+	"content": "A generic and fast solver of mode-coupling theory-like integrodifferential equations"
 	},
-	"github/prdm0/ropenblas": {
-	"id": "github/prdm0/ropenblas",
-	"title": "github/prdm0/ropenblas",
-	"url": " https://rseng.github.io/software/repository/github/prdm0/ropenblas",
-	"content": "Package to link R language to OpenBLAS library"
+	"github/sbailey/empca": {
+	"id": "github/sbailey/empca",
+	"title": "github/sbailey/empca",
+	"url": " https://rseng.github.io/software/repository/github/sbailey/empca",
+	"content": "Principal Component Analysis (PCA) for Missing and/or Noisy Data"
 	},
-	"github/joergbuchwald/joss_ogs6py_VTUinterface": {
-	"id": "github/joergbuchwald/joss_ogs6py_VTUinterface",
-	"title": "github/joergbuchwald/joss_ogs6py_VTUinterface",
-	"url": " https://rseng.github.io/software/repository/github/joergbuchwald/joss_ogs6py_VTUinterface",
-	"content": "None"
+	"github/afeinstein20/eleanor": {
+	"id": "github/afeinstein20/eleanor",
+	"title": "github/afeinstein20/eleanor",
+	"url": " https://rseng.github.io/software/repository/github/afeinstein20/eleanor",
+	"content": "A tool for light curve extraction from the TESS FFIs."
 	},
-	"github/AlexanderLabWHOI/EUKulele": {
-	"id": "github/AlexanderLabWHOI/EUKulele",
-	"title": "github/AlexanderLabWHOI/EUKulele",
-	"url": " https://rseng.github.io/software/repository/github/AlexanderLabWHOI/EUKulele",
-	"content": "Automatic eukaryotic taxonomic classification"
+	"github/afeinstein20/stella": {
+	"id": "github/afeinstein20/stella",
+	"title": "github/afeinstein20/stella",
+	"url": " https://rseng.github.io/software/repository/github/afeinstein20/stella",
+	"content": "For characterizing flares with convolutional neural networks"
 	},
-	"github/SatelliteShorelines/CoastSeg": {
-	"id": "github/SatelliteShorelines/CoastSeg",
-	"title": "github/SatelliteShorelines/CoastSeg",
-	"url": " https://rseng.github.io/software/repository/github/SatelliteShorelines/CoastSeg",
-	"content": "An interactive toolbox for downloading satellite imagery, applying image segmentation models, mapping shoreline positions and more. The mapping extension for CoastSat and Zoo."
+	"github/hyattpd/Prodigal": {
+	"id": "github/hyattpd/Prodigal",
+	"title": "github/hyattpd/Prodigal",
+	"url": " https://rseng.github.io/software/repository/github/hyattpd/Prodigal",
+	"content": "Prodigal Gene Prediction Software"
 	},
-	"github/EliseJ/superabc": {
-	"id": "github/EliseJ/superabc",
-	"title": "github/EliseJ/superabc",
-	"url": " https://rseng.github.io/software/repository/github/EliseJ/superabc",
-	"content": "superABC: cosmological constraints from SN light curves using Approximate Bayesian Computation"
+	"github/remi-adam/minot": {
+	"id": "github/remi-adam/minot",
+	"title": "github/remi-adam/minot",
+	"url": " https://rseng.github.io/software/repository/github/remi-adam/minot",
+	"content": "minot: Modeling of the ICM (Non-)thermal content and Observables prediction Tools"
 	},
-	"github/EliseJ/astroABC": {
-	"id": "github/EliseJ/astroABC",
-	"title": "github/EliseJ/astroABC",
-	"url": " https://rseng.github.io/software/repository/github/EliseJ/astroABC",
-	"content": "Approximate Bayesian Computation Sequential Monte Carlo sampler for parameter estimation."
+	"github/GalacticDynamics-Oxford/Agama": {
+	"id": "github/GalacticDynamics-Oxford/Agama",
+	"title": "github/GalacticDynamics-Oxford/Agama",
+	"url": " https://rseng.github.io/software/repository/github/GalacticDynamics-Oxford/Agama",
+	"content": "Action-based galaxy modeling framework"
 	},
-	"github/piernik-dev/piernik": {
-	"id": "github/piernik-dev/piernik",
-	"title": "github/piernik-dev/piernik",
-	"url": " https://rseng.github.io/software/repository/github/piernik-dev/piernik",
-	"content": "Piernik MHD Code"
+	"github/jonschwenk/RivGraph": {
+	"id": "github/jonschwenk/RivGraph",
+	"title": "github/jonschwenk/RivGraph",
+	"url": " https://rseng.github.io/software/repository/github/jonschwenk/RivGraph",
+	"content": "Extracting and quantifying graphical representations of river and delta channel networks from binary masks"
 	},
-	"github/bwengals/CCSNMultivar": {
-	"id": "github/bwengals/CCSNMultivar",
-	"title": "github/bwengals/CCSNMultivar",
-	"url": " https://rseng.github.io/software/repository/github/bwengals/CCSNMultivar",
-	"content": "None"
+	"github/sethspjohnso/satmc": {
+	"id": "github/sethspjohnso/satmc",
+	"title": "github/sethspjohnso/satmc",
+	"url": " https://rseng.github.io/software/repository/github/sethspjohnso/satmc",
+	"content": "Current versions of IDL and Python based SATMC"
 	},
-	"github/plumed/plumed2": {
-	"id": "github/plumed/plumed2",
-	"title": "github/plumed/plumed2",
-	"url": " https://rseng.github.io/software/repository/github/plumed/plumed2",
-	"content": "Development version of plumed 2"
+	"github/tne-lab/py-behav-box-v2": {
+	"id": "github/tne-lab/py-behav-box-v2",
+	"title": "github/tne-lab/py-behav-box-v2",
+	"url": " https://rseng.github.io/software/repository/github/tne-lab/py-behav-box-v2",
+	"content": "Pybehave is an open source software interface and framework for controlling behavioral experiments in neuroscience and psychology."
 	},
-	"github/AA-ALERT/AMBER": {
-	"id": "github/AA-ALERT/AMBER",
-	"title": "github/AA-ALERT/AMBER",
-	"url": " https://rseng.github.io/software/repository/github/AA-ALERT/AMBER",
-	"content": "A many-core transient searching pipeline, designed mainly to search in real-time for Fast Radio Bursts."
+	"github/fabiopardo/tonic": {
+	"id": "github/fabiopardo/tonic",
+	"title": "github/fabiopardo/tonic",
+	"url": " https://rseng.github.io/software/repository/github/fabiopardo/tonic",
+	"content": "Tonic RL library"
 	},
-	"github/AA-ALERT/Dedispersion": {
-	"id": "github/AA-ALERT/Dedispersion",
-	"title": "github/AA-ALERT/Dedispersion",
-	"url": " https://rseng.github.io/software/repository/github/AA-ALERT/Dedispersion",
-	"content": "Radio astronomy dedispersion algorithm implemented for many-core accelerators."
+	"github/fabiopardo/qmap": {
+	"id": "github/fabiopardo/qmap",
+	"title": "github/fabiopardo/qmap",
+	"url": " https://rseng.github.io/software/repository/github/fabiopardo/qmap",
+	"content": "Scaling All-Goals Updates in Reinforcement Learning Using Convolutional Neural Networks"
 	},
-	"github/AA-ALERT/AstroData": {
-	"id": "github/AA-ALERT/AstroData",
-	"title": "github/AA-ALERT/AstroData",
-	"url": " https://rseng.github.io/software/repository/github/AA-ALERT/AstroData",
-	"content": "Set of C++ classes to operate on radio astronomical data."
+	"github/sourmash-bio/sourmash": {
+	"id": "github/sourmash-bio/sourmash",
+	"title": "github/sourmash-bio/sourmash",
+	"url": " https://rseng.github.io/software/repository/github/sourmash-bio/sourmash",
+	"content": "Quickly search, compare, and analyze genomic and metagenomic data sets."
 	},
-	"github/AA-ALERT/frbcatdb": {
-	"id": "github/AA-ALERT/frbcatdb",
-	"title": "github/AA-ALERT/frbcatdb",
-	"url": " https://rseng.github.io/software/repository/github/AA-ALERT/frbcatdb",
-	"content": "Fast Radio Burst (FRB) Catalogue DB management"
+	"github/EmmanuelSchaan/ThumbStack": {
+	"id": "github/EmmanuelSchaan/ThumbStack",
+	"title": "github/EmmanuelSchaan/ThumbStack",
+	"url": " https://rseng.github.io/software/repository/github/EmmanuelSchaan/ThumbStack",
+	"content": "None"
 	},
-	"github/AA-ALERT/frbcat-web": {
-	"id": "github/AA-ALERT/frbcat-web",
-	"title": "github/AA-ALERT/frbcat-web",
-	"url": " https://rseng.github.io/software/repository/github/AA-ALERT/frbcat-web",
-	"content": "FRBCat web"
+	"github/EmmanuelSchaan/LensQuEst": {
+	"id": "github/EmmanuelSchaan/LensQuEst",
+	"title": "github/EmmanuelSchaan/LensQuEst",
+	"url": " https://rseng.github.io/software/repository/github/EmmanuelSchaan/LensQuEst",
+	"content": "CMB lensing: standard quadratic estimator, shear and magnification (https://arxiv.org/abs/1804.06403)."
 	},
-	"github/eleniadam/npgreat": {
-	"id": "github/eleniadam/npgreat",
-	"title": "github/eleniadam/npgreat",
-	"url": " https://rseng.github.io/software/repository/github/eleniadam/npgreat",
-	"content": "A hybrid assembly method that utilizes Nanopore and Linked-Reads datasets for the assembly of the human subtelomere regions."
+	"github/EmmanuelSchaan/HaloGen": {
+	"id": "github/EmmanuelSchaan/HaloGen",
+	"title": "github/EmmanuelSchaan/HaloGen",
+	"url": " https://rseng.github.io/software/repository/github/EmmanuelSchaan/HaloGen",
+	"content": "Modular halo model code for matter, galaxies, lensing, tSZ and CIB."
 	},
-	"github/UAMCAntwerpen/LEADD": {
-	"id": "github/UAMCAntwerpen/LEADD",
-	"title": "github/UAMCAntwerpen/LEADD",
-	"url": " https://rseng.github.io/software/repository/github/UAMCAntwerpen/LEADD",
-	"content": "Lamarckian Evolutionary Algorithm for de novo Drug Design"
+	"github/EmmanuelSchaan/LaSSI": {
+	"id": "github/EmmanuelSchaan/LaSSI",
+	"title": "github/EmmanuelSchaan/LaSSI",
+	"url": " https://rseng.github.io/software/repository/github/EmmanuelSchaan/LaSSI",
+	"content": "Lightweight Fisher forecast for LSS."
 	},
-	"github/gvilitechltd/LibSWIFFT": {
-	"id": "github/gvilitechltd/LibSWIFFT",
-	"title": "github/gvilitechltd/LibSWIFFT",
-	"url": " https://rseng.github.io/software/repository/github/gvilitechltd/LibSWIFFT",
-	"content": "LibSWIFFT - A fast C/C++ library for the SWIFFT secure homomorphic hash function"
+	"github/hetalang/heta-compiler": {
+	"id": "github/hetalang/heta-compiler",
+	"title": "github/hetalang/heta-compiler",
+	"url": " https://rseng.github.io/software/repository/github/hetalang/heta-compiler",
+	"content": "Software tool for the compilation of Heta-based QSP modeling platform"
 	},
-	"github/a-slide/pycoQC": {
-	"id": "github/a-slide/pycoQC",
-	"title": "github/a-slide/pycoQC",
-	"url": " https://rseng.github.io/software/repository/github/a-slide/pycoQC",
-	"content": "pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)"
+	"github/vhaasteren/piccard": {
+	"id": "github/vhaasteren/piccard",
+	"title": "github/vhaasteren/piccard",
+	"url": " https://rseng.github.io/software/repository/github/vhaasteren/piccard",
+	"content": "Piccard: pulsar timing data analysis package"
 	},
-	"github/BattModels/asimtools": {
-	"id": "github/BattModels/asimtools",
-	"title": "github/BattModels/asimtools",
-	"url": " https://rseng.github.io/software/repository/github/BattModels/asimtools",
-	"content": "Optimized workflow management and script handling for atomistic simulations"
+	"github/epfl-radio-astro/PINION": {
+	"id": "github/epfl-radio-astro/PINION",
+	"title": "github/epfl-radio-astro/PINION",
+	"url": " https://rseng.github.io/software/repository/github/epfl-radio-astro/PINION",
+	"content": "A featherweight EoR simulation"
 	},
-	"github/xastprl/darsakx": {
-	"id": "github/xastprl/darsakx",
-	"title": "github/xastprl/darsakx",
-	"url": " https://rseng.github.io/software/repository/github/xastprl/darsakx",
-	"content": "DarsakX is a Python package that can be used to design and analyze the imaging performance of a multi-shell X-ray telescope with an optical configuration similar to Wolter-1 optics for astronomical purposes. "
+	"github/epfl-radio-astro/LiSA": {
+	"id": "github/epfl-radio-astro/LiSA",
+	"title": "github/epfl-radio-astro/LiSA",
+	"url": " https://rseng.github.io/software/repository/github/epfl-radio-astro/LiSA",
+	"content": "Lightweight Source finding Algorithms"
 	},
-	"github/afukushima/DiffCorr": {
-	"id": "github/afukushima/DiffCorr",
-	"title": "github/afukushima/DiffCorr",
-	"url": " https://rseng.github.io/software/repository/github/afukushima/DiffCorr",
+	"github/cns-iu/HRA-supporting-information": {
+	"id": "github/cns-iu/HRA-supporting-information",
+	"title": "github/cns-iu/HRA-supporting-information",
+	"url": " https://rseng.github.io/software/repository/github/cns-iu/HRA-supporting-information",
 	"content": "None"
 	},
-	"github/vallima/PRyMordial": {
-	"id": "github/vallima/PRyMordial",
-	"title": "github/vallima/PRyMordial",
-	"url": " https://rseng.github.io/software/repository/github/vallima/PRyMordial",
-	"content": "A Python package for precise computations of BBN within and beyond the Standard Model"
+	"github/niemasd/CoaTran": {
+	"id": "github/niemasd/CoaTran",
+	"title": "github/niemasd/CoaTran",
+	"url": " https://rseng.github.io/software/repository/github/niemasd/CoaTran",
+	"content": "CoaTran: Coalescent tree simulation along a transmission network"
 	},
-	"github/gausspy/gausspy": {
-	"id": "github/gausspy/gausspy",
-	"title": "github/gausspy/gausspy",
-	"url": " https://rseng.github.io/software/repository/github/gausspy/gausspy",
-	"content": "GaussPy: Python tool for implementing Autonomous Gaussian Decomposition"
+	"github/wcxve/elisa": {
+	"id": "github/wcxve/elisa",
+	"title": "github/wcxve/elisa",
+	"url": " https://rseng.github.io/software/repository/github/wcxve/elisa",
+	"content": "Efficient library for spectral analysis in high-energy astrophysics."
 	},
-	"github/ctkelley/MultiPrecisionArrays.jl": {
-	"id": "github/ctkelley/MultiPrecisionArrays.jl",
-	"title": "github/ctkelley/MultiPrecisionArrays.jl",
-	"url": " https://rseng.github.io/software/repository/github/ctkelley/MultiPrecisionArrays.jl",
-	"content": "Mulitprecision Arrays"
+	"github/marbl/MashMap": {
+	"id": "github/marbl/MashMap",
+	"title": "github/marbl/MashMap",
+	"url": " https://rseng.github.io/software/repository/github/marbl/MashMap",
+	"content": "A fast approximate aligner for long DNA sequences"
 	},
-	"github/akdeniz-uzay/A-Track": {
-	"id": "github/akdeniz-uzay/A-Track",
-	"title": "github/akdeniz-uzay/A-Track",
-	"url": " https://rseng.github.io/software/repository/github/akdeniz-uzay/A-Track",
-	"content": "A-Track: Detecting Moving Objects in FITS images."
+	"github/marbl/Winnowmap": {
+	"id": "github/marbl/Winnowmap",
+	"title": "github/marbl/Winnowmap",
+	"url": " https://rseng.github.io/software/repository/github/marbl/Winnowmap",
+	"content": "Long read / genome alignment software"
 	},
-	"github/fury-gl/fury": {
-	"id": "github/fury-gl/fury",
-	"title": "github/fury-gl/fury",
-	"url": " https://rseng.github.io/software/repository/github/fury-gl/fury",
-	"content": "FURY - Free Unified Rendering in pYthon."
+	"github/marbl/Mash": {
+	"id": "github/marbl/Mash",
+	"title": "github/marbl/Mash",
+	"url": " https://rseng.github.io/software/repository/github/marbl/Mash",
+	"content": "Fast genome and metagenome distance estimation using MinHash"
 	},
-	"github/domschrei/mallob": {
-	"id": "github/domschrei/mallob",
-	"title": "github/domschrei/mallob",
-	"url": " https://rseng.github.io/software/repository/github/domschrei/mallob",
-	"content": "Malleable Load Balancer. Massively Parallel Logic Backend. Award-winning SAT solving for the cloud."
+	"github/marbl/Krona": {
+	"id": "github/marbl/Krona",
+	"title": "github/marbl/Krona",
+	"url": " https://rseng.github.io/software/repository/github/marbl/Krona",
+	"content": "Interactively explore metagenomes and more from a web browser."
 	},
-	"github/hippalectryon-0/pyloggrid": {
-	"id": "github/hippalectryon-0/pyloggrid",
-	"title": "github/hippalectryon-0/pyloggrid",
-	"url": " https://rseng.github.io/software/repository/github/hippalectryon-0/pyloggrid",
-	"content": "Public docs for the python package pyloggrid"
+	"github/henrikju/resolve": {
+	"id": "github/henrikju/resolve",
+	"title": "github/henrikju/resolve",
+	"url": " https://rseng.github.io/software/repository/github/henrikju/resolve",
+	"content": "A Bayesian radio aperture synthesis algorithm."
 	},
-	"github/MatthijsHak/MetalDock": {
-	"id": "github/MatthijsHak/MetalDock",
-	"title": "github/MatthijsHak/MetalDock",
-	"url": " https://rseng.github.io/software/repository/github/MatthijsHak/MetalDock",
-	"content": "Dock organometallic compounds to proteins/DNA/biomolecules"
+	"github/cjneely10/EukMetaSanity": {
+	"id": "github/cjneely10/EukMetaSanity",
+	"title": "github/cjneely10/EukMetaSanity",
+	"url": " https://rseng.github.io/software/repository/github/cjneely10/EukMetaSanity",
+	"content": "Structural and functional annotation of eukaryotic metagenome-assembled genomes"
 	},
-	"github/oschwengers/bakta": {
-	"id": "github/oschwengers/bakta",
-	"title": "github/oschwengers/bakta",
-	"url": " https://rseng.github.io/software/repository/github/oschwengers/bakta",
-	"content": "Rapid &amp; standardized annotation of bacterial genomes &amp; plasmids"
+	"github/python-hydro/pyro2": {
+	"id": "github/python-hydro/pyro2",
+	"title": "github/python-hydro/pyro2",
+	"url": " https://rseng.github.io/software/repository/github/python-hydro/pyro2",
+	"content": "A framework for hydrodynamics explorations and prototyping"
 	},
-	"github/oschwengers/referenceseeker": {
-	"id": "github/oschwengers/referenceseeker",
-	"title": "github/oschwengers/referenceseeker",
-	"url": " https://rseng.github.io/software/repository/github/oschwengers/referenceseeker",
-	"content": "Rapid determination of appropriate reference genomes."
+	"github/watts-dev/watts": {
+	"id": "github/watts-dev/watts",
+	"title": "github/watts-dev/watts",
+	"url": " https://rseng.github.io/software/repository/github/watts-dev/watts",
+	"content": "Workflow and Template Toolkit for Simulation (WATTS)"
 	},
-	"github/oschwengers/platon": {
-	"id": "github/oschwengers/platon",
-	"title": "github/oschwengers/platon",
-	"url": " https://rseng.github.io/software/repository/github/oschwengers/platon",
-	"content": "Identification &amp; characterization of bacterial plasmid-borne contigs from short-read draft assemblies."
+	"github/wtraylor/modular_megafauna_model": {
+	"id": "github/wtraylor/modular_megafauna_model",
+	"title": "github/wtraylor/modular_megafauna_model",
+	"url": " https://rseng.github.io/software/repository/github/wtraylor/modular_megafauna_model",
+	"content": "Extendable, dynamic, process-based herbivore simulator that can be integrated into a dynamic vegetation model. Written as a C++ library."
 	},
-	"github/Beryl-Jingxin/PyExoCross": {
-	"id": "github/Beryl-Jingxin/PyExoCross",
-	"title": "github/Beryl-Jingxin/PyExoCross",
-	"url": " https://rseng.github.io/software/repository/github/Beryl-Jingxin/PyExoCross",
-	"content": "None"
+	"github/villrv/SuperRAENN": {
+	"id": "github/villrv/SuperRAENN",
+	"title": "github/villrv/SuperRAENN",
+	"url": " https://rseng.github.io/software/repository/github/villrv/SuperRAENN",
+	"content": "A recurrent autoencoder neural network-based classifier for SN light curves."
 	},
-	"github/idptools/metapredict": {
-	"id": "github/idptools/metapredict",
-	"title": "github/idptools/metapredict",
-	"url": " https://rseng.github.io/software/repository/github/idptools/metapredict",
-	"content": "A machine learning based protein disorder predictor."
+	"github/exoclime/HELA": {
+	"id": "github/exoclime/HELA",
+	"title": "github/exoclime/HELA",
+	"url": " https://rseng.github.io/software/repository/github/exoclime/HELA",
+	"content": "Random Forest retrieval for exoplanet atmospheres"
 	},
-	"github/secimTools/SECIMTools": {
-	"id": "github/secimTools/SECIMTools",
-	"title": "github/secimTools/SECIMTools",
-	"url": " https://rseng.github.io/software/repository/github/secimTools/SECIMTools",
-	"content": "A set of metabolomics tools for use in Galaxy"
+	"github/exoclime/HELIOS-K": {
+	"id": "github/exoclime/HELIOS-K",
+	"title": "github/exoclime/HELIOS-K",
+	"url": " https://rseng.github.io/software/repository/github/exoclime/HELIOS-K",
+	"content": "Ultrafast opacity calculator for exoplanetary atmospheres."
 	},
-	"github/tessgi/tvguide": {
-	"id": "github/tessgi/tvguide",
-	"title": "github/tessgi/tvguide",
-	"url": " https://rseng.github.io/software/repository/github/tessgi/tvguide",
-	"content": "A tool for determining whether stars and galaxies are observable by TESS."
+	"github/exoclime/THOR": {
+	"id": "github/exoclime/THOR",
+	"title": "github/exoclime/THOR",
+	"url": " https://rseng.github.io/software/repository/github/exoclime/THOR",
+	"content": "Atmospheric fluid dynamics solver optimized for GPUs."
 	},
-	"github/BrownDwarf/gollum": {
-	"id": "github/BrownDwarf/gollum",
-	"title": "github/BrownDwarf/gollum",
-	"url": " https://rseng.github.io/software/repository/github/BrownDwarf/gollum",
-	"content": "A microservice for programmatic access to precomputed synthetic spectral model grids in astronomy"
+	"github/exoclime/Helios-r2": {
+	"id": "github/exoclime/Helios-r2",
+	"title": "github/exoclime/Helios-r2",
+	"url": " https://rseng.github.io/software/repository/github/exoclime/Helios-r2",
+	"content": "A Bayesian Nested-Sampling Retrieval Code"
 	},
-	"github/OSeMOSYS/otoole": {
-	"id": "github/OSeMOSYS/otoole",
-	"title": "github/OSeMOSYS/otoole",
-	"url": " https://rseng.github.io/software/repository/github/OSeMOSYS/otoole",
-	"content": "OSeMOSYS Tools for Energy"
+	"github/exoclime/FastChem": {
+	"id": "github/exoclime/FastChem",
+	"title": "github/exoclime/FastChem",
+	"url": " https://rseng.github.io/software/repository/github/exoclime/FastChem",
+	"content": "An ultra-fast equilibrium chemistry"
 	},
-	"github/emrecdem/emo-spectre": {
-	"id": "github/emrecdem/emo-spectre",
-	"title": "github/emrecdem/emo-spectre",
-	"url": " https://rseng.github.io/software/repository/github/emrecdem/emo-spectre",
-	"content": "None"
+	"github/exoclime/VULCAN": {
+	"id": "github/exoclime/VULCAN",
+	"title": "github/exoclime/VULCAN",
+	"url": " https://rseng.github.io/software/repository/github/exoclime/VULCAN",
+	"content": "Chemical Kinetics For Exoplanetary Atmospheres"
 	},
-	"github/AllenInstitute/bmtk": {
-	"id": "github/AllenInstitute/bmtk",
-	"title": "github/AllenInstitute/bmtk",
-	"url": " https://rseng.github.io/software/repository/github/AllenInstitute/bmtk",
-	"content": "Brain Modeling Toolkit"
+	"github/exoclime/HELIOS": {
+	"id": "github/exoclime/HELIOS",
+	"title": "github/exoclime/HELIOS",
+	"url": " https://rseng.github.io/software/repository/github/exoclime/HELIOS",
+	"content": "GPU-Accelerated Radiative Transfer Code For Exoplanetary Atmospheres"
 	},
-	"github/finsberg/gotranx": {
-	"id": "github/finsberg/gotranx",
-	"title": "github/finsberg/gotranx",
-	"url": " https://rseng.github.io/software/repository/github/finsberg/gotranx",
-	"content": "Next generation ODE translator"
+	"github/m2aia/m2aia": {
+	"id": "github/m2aia/m2aia",
+	"title": "github/m2aia/m2aia",
+	"url": " https://rseng.github.io/software/repository/github/m2aia/m2aia",
+	"content": "Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)"
 	},
-	"github/ulilautenschlager/crimp": {
-	"id": "github/ulilautenschlager/crimp",
-	"title": "github/ulilautenschlager/crimp",
-	"url": " https://rseng.github.io/software/repository/github/ulilautenschlager/crimp",
-	"content": "Cluster relabeling based on impurity minimization"
+	"github/ARC-OPT/wbc": {
+	"id": "github/ARC-OPT/wbc",
+	"title": "github/ARC-OPT/wbc",
+	"url": " https://rseng.github.io/software/repository/github/ARC-OPT/wbc",
+	"content": "C++ library for optimization-based control of redundant robots"
 	},
-	"github/anmolter/XLUR": {
-	"id": "github/anmolter/XLUR",
-	"title": "github/anmolter/XLUR",
-	"url": " https://rseng.github.io/software/repository/github/anmolter/XLUR",
-	"content": "A Python toolbox for ArcGIS Pro  that enables the development and application of land use regression models."
+	"github/AbeelLab/lorikeet": {
+	"id": "github/AbeelLab/lorikeet",
+	"title": "github/AbeelLab/lorikeet",
+	"url": " https://rseng.github.io/software/repository/github/AbeelLab/lorikeet",
+	"content": "Digital spoligotyping of MTB strains from Illumina read data"
 	},
-	"github/UncertainLab/Enlsip.jl": {
-	"id": "github/UncertainLab/Enlsip.jl",
-	"title": "github/UncertainLab/Enlsip.jl",
-	"url": " https://rseng.github.io/software/repository/github/UncertainLab/Enlsip.jl",
-	"content": "Enlsip.jl is the Julia version of a Fortran77 optimization library designed to solve nonlinear least squares problems under general nonlinear constraints."
+	"github/jiwoncpark/baobab": {
+	"id": "github/jiwoncpark/baobab",
+	"title": "github/jiwoncpark/baobab",
+	"url": " https://rseng.github.io/software/repository/github/jiwoncpark/baobab",
+	"content": "Generates the training data for hierarchical inference of strongly-lensed systems with Bayesian neural networks"
 	},
-	"github/labjg/fibmeasure": {
-	"id": "github/labjg/fibmeasure",
-	"title": "github/labjg/fibmeasure",
-	"url": " https://rseng.github.io/software/repository/github/labjg/fibmeasure",
-	"content": "Python/Cython module to find the centre of back-illuminated optical fibres in metrology images"
+	"github/annehutter/polyspectrum": {
+	"id": "github/annehutter/polyspectrum",
+	"title": "github/annehutter/polyspectrum",
+	"url": " https://rseng.github.io/software/repository/github/annehutter/polyspectrum",
+	"content": "MPI-parallelised code to compute polyspectrum (including bispectrum) from a 3D grid"
 	},
-	"github/ORNL/tx2": {
-	"id": "github/ORNL/tx2",
-	"title": "github/ORNL/tx2",
-	"url": " https://rseng.github.io/software/repository/github/ORNL/tx2",
-	"content": "Transformer eXplainability and eXploration"
+	"github/annehutter/astraeus": {
+	"id": "github/annehutter/astraeus",
+	"title": "github/annehutter/astraeus",
+	"url": " https://rseng.github.io/software/repository/github/annehutter/astraeus",
+	"content": "Home of the semi-analytical / semi-numerical galaxy evolution and reionization code ASTRAEUS"
+	},
+	"github/annehutter/grid-model": {
+	"id": "github/annehutter/grid-model",
+	"title": "github/annehutter/grid-model",
+	"url": " https://rseng.github.io/software/repository/github/annehutter/grid-model",
+	"content": "Code to compute ionization field from density fields and source catalogue (CIFOG)"
+	},
+	"github/Griffan/VerifyBamID": {
+	"id": "github/Griffan/VerifyBamID",
+	"title": "github/Griffan/VerifyBamID",
+	"url": " https://rseng.github.io/software/repository/github/Griffan/VerifyBamID",
+	"content": "VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method."
+	},
+	"github/UBC-Astrophysics/kd-match": {
+	"id": "github/UBC-Astrophysics/kd-match",
+	"title": "github/UBC-Astrophysics/kd-match",
+	"url": " https://rseng.github.io/software/repository/github/UBC-Astrophysics/kd-match",
+	"content": "Rapidly matches stellar catalogues"
 	},
-	"github/ORNL/curifactory": {
-	"id": "github/ORNL/curifactory",
-	"title": "github/ORNL/curifactory",
-	"url": " https://rseng.github.io/software/repository/github/ORNL/curifactory",
-	"content": "An experiment workflow and organization tool."
+	"github/hypre-space/hypredrive": {
+	"id": "github/hypre-space/hypredrive",
+	"title": "github/hypre-space/hypredrive",
+	"url": " https://rseng.github.io/software/repository/github/hypre-space/hypredrive",
+	"content": "High-level interface for solving linear systems with hypre"
 	},
-	"github/ORNL/Equilipy": {
-	"id": "github/ORNL/Equilipy",
-	"title": "github/ORNL/Equilipy",
-	"url": " https://rseng.github.io/software/repository/github/ORNL/Equilipy",
-	"content": "Open-source python package for multicomponent multiphase equilibrium CALPHAD calculations"
+	"github/lrnv/cort": {
+	"id": "github/lrnv/cort",
+	"title": "github/lrnv/cort",
+	"url": " https://rseng.github.io/software/repository/github/lrnv/cort",
+	"content": "Classes and Tools For Some Empirical and Non-parametrical Copula Models."
 	},
-	"github/djones1040/PythonPhot": {
-	"id": "github/djones1040/PythonPhot",
-	"title": "github/djones1040/PythonPhot",
-	"url": " https://rseng.github.io/software/repository/github/djones1040/PythonPhot",
-	"content": "Simple DAOPHOT-type photometry in Python translated from IDL AstroLib photometry algorithms.  Please email me with bugs, suggestions, omissions, etc.  The code is citable as part of the Astrophysics Source Code Library (http://ascl.net/1501.010)."
+	"github/lrnv/Copulas.jl": {
+	"id": "github/lrnv/Copulas.jl",
+	"title": "github/lrnv/Copulas.jl",
+	"url": " https://rseng.github.io/software/repository/github/lrnv/Copulas.jl",
+	"content": "A fully `Distributions.jl`-compliant copula package"
 	},
-	"github/opimwue/ddop": {
-	"id": "github/opimwue/ddop",
-	"title": "github/opimwue/ddop",
-	"url": " https://rseng.github.io/software/repository/github/opimwue/ddop",
-	"content": "https://opimwue.github.io/ddop/."
+	"github/valeriabonapersona/repair": {
+	"id": "github/valeriabonapersona/repair",
+	"title": "github/valeriabonapersona/repair",
+	"url": " https://rseng.github.io/software/repository/github/valeriabonapersona/repair",
+	"content": "Reduction from Prior Animal Informed Research"
 	},
-	"github/Dylan-Aliberti/Kepler-Collisions": {
-	"id": "github/Dylan-Aliberti/Kepler-Collisions",
-	"title": "github/Dylan-Aliberti/Kepler-Collisions",
-	"url": " https://rseng.github.io/software/repository/github/Dylan-Aliberti/Kepler-Collisions",
-	"content": "Code used for testing the the analytic propagator."
+	"github/rpoleski/MulensModel": {
+	"id": "github/rpoleski/MulensModel",
+	"title": "github/rpoleski/MulensModel",
+	"url": " https://rseng.github.io/software/repository/github/rpoleski/MulensModel",
+	"content": "Microlensing Modelling package"
 	},
-	"github/WGLab/InterVar": {
-	"id": "github/WGLab/InterVar",
-	"title": "github/WGLab/InterVar",
-	"url": " https://rseng.github.io/software/repository/github/WGLab/InterVar",
-	"content": "A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline"
+	"github/ZjuLiangsl/mmkp": {
+	"id": "github/ZjuLiangsl/mmkp",
+	"title": "github/ZjuLiangsl/mmkp",
+	"url": " https://rseng.github.io/software/repository/github/ZjuLiangsl/mmkp",
+	"content": "A Mind Mapping Knowledgebase Prototyping Tool for Precision Medicine"
 	},
-	"github/WGLab/LongReadSum": {
-	"id": "github/WGLab/LongReadSum",
-	"title": "github/WGLab/LongReadSum",
-	"url": " https://rseng.github.io/software/repository/github/WGLab/LongReadSum",
-	"content": "LongReadSum supports FASTA, FASTQ, BAM, FAST5, and sequencing_summary.txt file formats for quick generation of QC data in HTML and text format."
+	"github/highamm/sptotal": {
+	"id": "github/highamm/sptotal",
+	"title": "github/highamm/sptotal",
+	"url": " https://rseng.github.io/software/repository/github/highamm/sptotal",
+	"content": "Package for Fitting Spatial Linear Models and Predicting Total Abundances for Finite Populations"
 	},
-	"github/WGLab/LongGF": {
-	"id": "github/WGLab/LongGF",
-	"title": "github/WGLab/LongGF",
-	"url": " https://rseng.github.io/software/repository/github/WGLab/LongGF",
-	"content": "A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing"
+	"github/healpy/healpy": {
+	"id": "github/healpy/healpy",
+	"title": "github/healpy/healpy",
+	"url": " https://rseng.github.io/software/repository/github/healpy/healpy",
+	"content": "Python healpix maps tools"
 	},
-	"github/xiaotiand/FunFor": {
-	"id": "github/xiaotiand/FunFor",
-	"title": "github/xiaotiand/FunFor",
-	"url": " https://rseng.github.io/software/repository/github/xiaotiand/FunFor",
-	"content": "FunFor R package"
+	"github/lukaswenzl/Magnification_bias_estimation_in_galaxy_surveys": {
+	"id": "github/lukaswenzl/Magnification_bias_estimation_in_galaxy_surveys",
+	"title": "github/lukaswenzl/Magnification_bias_estimation_in_galaxy_surveys",
+	"url": " https://rseng.github.io/software/repository/github/lukaswenzl/Magnification_bias_estimation_in_galaxy_surveys",
+	"content": "Code underlying the paper Wenzl, Chen, Bean 2023 https://arxiv.org/abs/2308.05892"
 	},
-	"github/r-spatialecology/shar": {
-	"id": "github/r-spatialecology/shar",
-	"title": "github/r-spatialecology/shar",
-	"url": " https://rseng.github.io/software/repository/github/r-spatialecology/shar",
-	"content": ":package: Analyse species-habitat associations in R"
+	"github/jonaselgammal/GPry": {
+	"id": "github/jonaselgammal/GPry",
+	"title": "github/jonaselgammal/GPry",
+	"url": " https://rseng.github.io/software/repository/github/jonaselgammal/GPry",
+	"content": "A Package for Bayesian inference of expensive likelihoods with Gaussian Processes"
 	},
-	"github/linnarsson-lab/loompy": {
-	"id": "github/linnarsson-lab/loompy",
-	"title": "github/linnarsson-lab/loompy",
-	"url": " https://rseng.github.io/software/repository/github/linnarsson-lab/loompy",
-	"content": "Python implementation of the Loom file format - http://loompy.org"
+	"github/phelelani/nf-rnaSeqCount": {
+	"id": "github/phelelani/nf-rnaSeqCount",
+	"title": "github/phelelani/nf-rnaSeqCount",
+	"url": " https://rseng.github.io/software/repository/github/phelelani/nf-rnaSeqCount",
+	"content": "Assembly and differential expression analysis"
 	},
-	"github/MD-Studio/cerulean": {
-	"id": "github/MD-Studio/cerulean",
-	"title": "github/MD-Studio/cerulean",
-	"url": " https://rseng.github.io/software/repository/github/MD-Studio/cerulean",
-	"content": "A Python 3 library for talking to HPC clusters and supercomputers"
+	"github/phelelani/nf-rnaSeqMetagen": {
+	"id": "github/phelelani/nf-rnaSeqMetagen",
+	"title": "github/phelelani/nf-rnaSeqMetagen",
+	"url": " https://rseng.github.io/software/repository/github/phelelani/nf-rnaSeqMetagen",
+	"content": "Metagenomics pipeline"
 	},
-	"github/MD-Studio/MDStudio": {
-	"id": "github/MD-Studio/MDStudio",
-	"title": "github/MD-Studio/MDStudio",
-	"url": " https://rseng.github.io/software/repository/github/MD-Studio/MDStudio",
-	"content": "A general framework for microservice based distributed applications"
+	"github/deezer/spleeter": {
+	"id": "github/deezer/spleeter",
+	"title": "github/deezer/spleeter",
+	"url": " https://rseng.github.io/software/repository/github/deezer/spleeter",
+	"content": "Deezer source separation library including pretrained models."
 	},
-	"github/MD-Studio/cerise": {
-	"id": "github/MD-Studio/cerise",
-	"title": "github/MD-Studio/cerise",
-	"url": " https://rseng.github.io/software/repository/github/MD-Studio/cerise",
-	"content": "A REST service for running CWL workflows on remote clusters"
+	"github/SarveshVGharat/Plages-Identification": {
+	"id": "github/SarveshVGharat/Plages-Identification",
+	"title": "github/SarveshVGharat/Plages-Identification",
+	"url": " https://rseng.github.io/software/repository/github/SarveshVGharat/Plages-Identification",
+	"content": "None"
 	},
-	"github/Taywee/args": {
-	"id": "github/Taywee/args",
-	"title": "github/Taywee/args",
-	"url": " https://rseng.github.io/software/repository/github/Taywee/args",
-	"content": "  A simple header-only C++ argument parser library. Supposed to be flexible and powerful, and attempts to be compatible with the functionality of the Python standard argparse library (though not necessarily the API)."
+	"github/maickrau/GraphAligner": {
+	"id": "github/maickrau/GraphAligner",
+	"title": "github/maickrau/GraphAligner",
+	"url": " https://rseng.github.io/software/repository/github/maickrau/GraphAligner",
+	"content": "Sequence to graph aligner for long reads"
 	},
-	"github/maxibor/sam2lca": {
-	"id": "github/maxibor/sam2lca",
-	"title": "github/maxibor/sam2lca",
-	"url": " https://rseng.github.io/software/repository/github/maxibor/sam2lca",
-	"content": "Lowest Common Ancestor from a SAM/BAM/CRAM alignment file"
+	"github/maickrau/MBG": {
+	"id": "github/maickrau/MBG",
+	"title": "github/maickrau/MBG",
+	"url": " https://rseng.github.io/software/repository/github/maickrau/MBG",
+	"content": "Minimizer based sparse de Bruijn graph constructor."
 	},
-	"github/zonca/python-qucs": {
-	"id": "github/zonca/python-qucs",
-	"title": "github/zonca/python-qucs",
-	"url": " https://rseng.github.io/software/repository/github/zonca/python-qucs",
-	"content": "QUCS, (http://qucs.sf.net), is a powerful open-source circuit simulator, python-qucs is a Python package that allows to automate the process of preparing input netlists for several simulations, run them, and export the results."
+	"github/christopherburke/tess-point": {
+	"id": "github/christopherburke/tess-point",
+	"title": "github/christopherburke/tess-point",
+	"url": " https://rseng.github.io/software/repository/github/christopherburke/tess-point",
+	"content": "Determine pixel coordinates for TESS targets"
 	},
-	"github/zonca/dst": {
-	"id": "github/zonca/dst",
-	"title": "github/zonca/dst",
-	"url": " https://rseng.github.io/software/repository/github/zonca/dst",
-	"content": "None"
+	"github/uclchem/Chemulator": {
+	"id": "github/uclchem/Chemulator",
+	"title": "github/uclchem/Chemulator",
+	"url": " https://rseng.github.io/software/repository/github/uclchem/Chemulator",
+	"content": "The thermochemical emulator for hydrodynamical modelling"
 	},
-	"github/sagepublishing/rejected_article_tracker_pkg": {
-	"id": "github/sagepublishing/rejected_article_tracker_pkg",
-	"title": "github/sagepublishing/rejected_article_tracker_pkg",
-	"url": " https://rseng.github.io/software/repository/github/sagepublishing/rejected_article_tracker_pkg",
-	"content": "None"
+	"github/google/caliban": {
+	"id": "github/google/caliban",
+	"title": "github/google/caliban",
+	"url": " https://rseng.github.io/software/repository/github/google/caliban",
+	"content": "Research workflows made easy, locally and in the Cloud."
 	},
-	"github/Robaina/Pynteny": {
-	"id": "github/Robaina/Pynteny",
-	"title": "github/Robaina/Pynteny",
-	"url": " https://rseng.github.io/software/repository/github/Robaina/Pynteny",
-	"content": "Query sequence database by HMMs arranged in predefined synteny structure"
+	"github/google/best": {
+	"id": "github/google/best",
+	"title": "github/google/best",
+	"url": " https://rseng.github.io/software/repository/github/google/best",
+	"content": "Bam Error Stats Tool (best): analysis of error types in aligned reads."
 	},
-	"github/insilico/cncv": {
-	"id": "github/insilico/cncv",
-	"title": "github/insilico/cncv",
-	"url": " https://rseng.github.io/software/repository/github/insilico/cncv",
-	"content": "Consensus Nested Cross-Validation"
+	"github/google/jax": {
+	"id": "github/google/jax",
+	"title": "github/google/jax",
+	"url": " https://rseng.github.io/software/repository/github/google/jax",
+	"content": "Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more"
 	},
-	"github/DochtermannLab/G-PopComparison": {
-	"id": "github/DochtermannLab/G-PopComparison",
-	"title": "github/DochtermannLab/G-PopComparison",
-	"url": " https://rseng.github.io/software/repository/github/DochtermannLab/G-PopComparison",
-	"content": "None"
+	"github/marcelm/alignlib": {
+	"id": "github/marcelm/alignlib",
+	"title": "github/marcelm/alignlib",
+	"url": " https://rseng.github.io/software/repository/github/marcelm/alignlib",
+	"content": "edit and Hamming distances for biological sequences"
 	},
-	"github/DochtermannLab/BehavioralHeritability": {
-	"id": "github/DochtermannLab/BehavioralHeritability",
-	"title": "github/DochtermannLab/BehavioralHeritability",
-	"url": " https://rseng.github.io/software/repository/github/DochtermannLab/BehavioralHeritability",
-	"content": "None"
+	"github/marcelm/dnaio": {
+	"id": "github/marcelm/dnaio",
+	"title": "github/marcelm/dnaio",
+	"url": " https://rseng.github.io/software/repository/github/marcelm/dnaio",
+	"content": "Read and write FASTQ and FASTA efficiently from Python"
 	},
-	"github/temken/DaMaSCUS-SUN": {
-	"id": "github/temken/DaMaSCUS-SUN",
-	"title": "github/temken/DaMaSCUS-SUN",
-	"url": " https://rseng.github.io/software/repository/github/temken/DaMaSCUS-SUN",
-	"content": "Dark Matter Simulation Code for Underground Scatterings - Sun Edition"
+	"github/marcelm/cutadapt": {
+	"id": "github/marcelm/cutadapt",
+	"title": "github/marcelm/cutadapt",
+	"url": " https://rseng.github.io/software/repository/github/marcelm/cutadapt",
+	"content": "finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads."
 	},
-	"github/temken/DarkARC": {
-	"id": "github/temken/DarkARC",
-	"title": "github/temken/DarkARC",
-	"url": " https://rseng.github.io/software/repository/github/temken/DarkARC",
-	"content": "Dark Matter-induced Atomic Response Code (DarkARC) - A python tool for the calculation and tabulation of atomic response functions for ionization via dark matter-electron scatterings."
+	"github/marcelm/tinyalign": {
+	"id": "github/marcelm/tinyalign",
+	"title": "github/marcelm/tinyalign",
+	"url": " https://rseng.github.io/software/repository/github/marcelm/tinyalign",
+	"content": "numerical representation of differences between strings"
 	},
-	"github/temken/DaMaSCUS-CRUST": {
-	"id": "github/temken/DaMaSCUS-CRUST",
-	"title": "github/temken/DaMaSCUS-CRUST",
-	"url": " https://rseng.github.io/software/repository/github/temken/DaMaSCUS-CRUST",
-	"content": "Dark Matter Simulation Code for Underground Scatterings - Crust Edition"
+	"github/clauswilke/PeptideBuilder": {
+	"id": "github/clauswilke/PeptideBuilder",
+	"title": "github/clauswilke/PeptideBuilder",
+	"url": " https://rseng.github.io/software/repository/github/clauswilke/PeptideBuilder",
+	"content": "A simple Python library to generate model peptides"
 	},
-	"github/temken/Dirac_vs_Majorana": {
-	"id": "github/temken/Dirac_vs_Majorana",
-	"title": "github/temken/Dirac_vs_Majorana",
-	"url": " https://rseng.github.io/software/repository/github/temken/Dirac_vs_Majorana",
-	"content": "Statistical discrimination of sub-GeV Majorana and Dirac dark matter at direct detection experiments."
+	"github/wmglab-duke/ascent": {
+	"id": "github/wmglab-duke/ascent",
+	"title": "github/wmglab-duke/ascent",
+	"url": " https://rseng.github.io/software/repository/github/wmglab-duke/ascent",
+	"content": "ASCENT (Automated Simulations to Characterize Electrical Nerve Thresholds): A pipeline for sample-specific computational modeling of electrical stimulation of peripheral nerves"
 	},
-	"github/temken/obscura": {
-	"id": "github/temken/obscura",
-	"title": "github/temken/obscura",
-	"url": " https://rseng.github.io/software/repository/github/temken/obscura",
-	"content": "A modular C++ tool and library for dark matter direct detection computations for both nuclear and electron recoil experiments."
+	"github/londumas/redvsblue": {
+	"id": "github/londumas/redvsblue",
+	"title": "github/londumas/redvsblue",
+	"url": " https://rseng.github.io/software/repository/github/londumas/redvsblue",
+	"content": "Quasar and emission line precise redshift fitting from prior"
 	},
-	"github/temken/DaMaSCUS": {
-	"id": "github/temken/DaMaSCUS",
-	"title": "github/temken/DaMaSCUS",
-	"url": " https://rseng.github.io/software/repository/github/temken/DaMaSCUS",
-	"content": "Dark Matter Simulation Code for Underground Scatterings"
+	"github/qcxms/QCxMS": {
+	"id": "github/qcxms/QCxMS",
+	"title": "github/qcxms/QCxMS",
+	"url": " https://rseng.github.io/software/repository/github/qcxms/QCxMS",
+	"content": "Quantum mechanic mass spectrometry calculation program"
 	},
-	"github/simonsobs/nemo": {
-	"id": "github/simonsobs/nemo",
-	"title": "github/simonsobs/nemo",
-	"url": " https://rseng.github.io/software/repository/github/simonsobs/nemo",
-	"content": "Millimeter-wave map filtering and Sunyaev-Zel&#39;dovich galaxy cluster/source detection package. Originally developed for the Atacama Cosmology Telescope project."
+	"github/zpenoyre/CausticFrog": {
+	"id": "github/zpenoyre/CausticFrog",
+	"title": "github/zpenoyre/CausticFrog",
+	"url": " https://rseng.github.io/software/repository/github/zpenoyre/CausticFrog",
+	"content": "1D Lagrangian Simulation Package"
 	},
-	"github/simonsobs/so_noise_models": {
-	"id": "github/simonsobs/so_noise_models",
-	"title": "github/simonsobs/so_noise_models",
-	"url": " https://rseng.github.io/software/repository/github/simonsobs/so_noise_models",
-	"content": "Simons Observatory N(ell) noise models for public release"
+	"github/zpenoyre/OoT": {
+	"id": "github/zpenoyre/OoT",
+	"title": "github/zpenoyre/OoT",
+	"url": " https://rseng.github.io/software/repository/github/zpenoyre/OoT",
+	"content": "Out-of-Transit Light Curve Generator"
 	},
-	"github/simonsobs/pixell": {
-	"id": "github/simonsobs/pixell",
-	"title": "github/simonsobs/pixell",
-	"url": " https://rseng.github.io/software/repository/github/simonsobs/pixell",
-	"content": "A rectangular pixel map manipulation and harmonic analysis library derived from Sigurd Naess&#39; enlib."
+	"github/Fermipy/fermipy": {
+	"id": "github/Fermipy/fermipy",
+	"title": "github/Fermipy/fermipy",
+	"url": " https://rseng.github.io/software/repository/github/Fermipy/fermipy",
+	"content": "Fermi-LAT Python Analysis Framework"
 	},
-	"github/simonsobs/mnms": {
-	"id": "github/simonsobs/mnms",
-	"title": "github/simonsobs/mnms",
-	"url": " https://rseng.github.io/software/repository/github/simonsobs/mnms",
-	"content": "Generate map-based noise models and noise simulations."
+	"github/elliohow/fMRI_ROI_Analysis_Tool": {
+	"id": "github/elliohow/fMRI_ROI_Analysis_Tool",
+	"title": "github/elliohow/fMRI_ROI_Analysis_Tool",
+	"url": " https://rseng.github.io/software/repository/github/elliohow/fMRI_ROI_Analysis_Tool",
+	"content": "An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio."
 	},
-	"github/jacobmerson/model-traits": {
-	"id": "github/jacobmerson/model-traits",
-	"title": "github/jacobmerson/model-traits",
-	"url": " https://rseng.github.io/software/repository/github/jacobmerson/model-traits",
-	"content": "simple library for dealing with simulation boundary conditions"
+	"github/coccoinomane/song": {
+	"id": "github/coccoinomane/song",
+	"title": "github/coccoinomane/song",
+	"url": " https://rseng.github.io/software/repository/github/coccoinomane/song",
+	"content": "SONG (Second Order Non-Gaussianity) is a Boltzmann code that computes many observables related to the Cosmic Microwave Background and to the cosmological perturbations at second order in perturbation theory."
 	},
-	"github/biswajitmb/DarpanX": {
-	"id": "github/biswajitmb/DarpanX",
-	"title": "github/biswajitmb/DarpanX",
-	"url": " https://rseng.github.io/software/repository/github/biswajitmb/DarpanX",
-	"content": "DarpanX is a Python 3 package that provides functionality to compute reflectivity and other specular optical functions of a multilayer or single layer mirror for different energy and angles as well as to fit the XRR measurements of the mirrors."
+	"github/coccoinomane/zelda": {
+	"id": "github/coccoinomane/zelda",
+	"title": "github/coccoinomane/zelda",
+	"url": " https://rseng.github.io/software/repository/github/coccoinomane/zelda",
+	"content": "Tool to generate correlation functions &amp; power spectra from a galaxy catalogue."
 	},
-	"github/HUST-DataMan/FRMC": {
-	"id": "github/HUST-DataMan/FRMC",
-	"title": "github/HUST-DataMan/FRMC",
-	"url": " https://rseng.github.io/software/repository/github/HUST-DataMan/FRMC",
-	"content": "FRMC is a fast and robust imputation software for single cell RNA-Seq data."
+	"github/konfound-project/konfound": {
+	"id": "github/konfound-project/konfound",
+	"title": "github/konfound-project/konfound",
+	"url": " https://rseng.github.io/software/repository/github/konfound-project/konfound",
+	"content": "R package for carrying out sensitivity analysis"
 	},
-	"github/pierrexyz/pybird": {
-	"id": "github/pierrexyz/pybird",
-	"title": "github/pierrexyz/pybird",
-	"url": " https://rseng.github.io/software/repository/github/pierrexyz/pybird",
-	"content": "Python code for Biased tracers in redshift space"
+	"github/bencebeky/spotrod": {
+	"id": "github/bencebeky/spotrod",
+	"title": "github/bencebeky/spotrod",
+	"url": " https://rseng.github.io/software/repository/github/bencebeky/spotrod",
+	"content": "A semi-analytic model for transits of spotted stars -- C implementation and Python API"
 	},
-	"github/pierrexyz/cbird": {
-	"id": "github/pierrexyz/cbird",
-	"title": "github/pierrexyz/cbird",
-	"url": " https://rseng.github.io/software/repository/github/pierrexyz/cbird",
-	"content": "Code for Bias tracers In Redshift space"
+	"github/dhubber/seren": {
+	"id": "github/dhubber/seren",
+	"title": "github/dhubber/seren",
+	"url": " https://rseng.github.io/software/repository/github/dhubber/seren",
+	"content": "SEREN SPH code (Hubber et al. 2011) for astrophysical hydrodynamics simulations"
 	},
-	"github/johannes-titz/cofad": {
-	"id": "github/johannes-titz/cofad",
-	"title": "github/johannes-titz/cofad",
-	"url": " https://rseng.github.io/software/repository/github/johannes-titz/cofad",
-	"content": "None"
+	"github/rahulshah1397/LADDER": {
+	"id": "github/rahulshah1397/LADDER",
+	"title": "github/rahulshah1397/LADDER",
+	"url": " https://rseng.github.io/software/repository/github/rahulshah1397/LADDER",
+	"content": "Public release of LADDER (https://doi.org/10.3847/1538-4365/ad5558) [arXiv: 2401.17029]"
 	},
-	"github/nikhil-sarin/redback": {
-	"id": "github/nikhil-sarin/redback",
-	"title": "github/nikhil-sarin/redback",
-	"url": " https://rseng.github.io/software/repository/github/nikhil-sarin/redback",
-	"content": "A Bayesian inference software package for end-to-end fitting and interpretation of electromagnetic transients"
+	"github/mivp/encube": {
+	"id": "github/mivp/encube",
+	"title": "github/mivp/encube",
+	"url": " https://rseng.github.io/software/repository/github/mivp/encube",
+	"content": "Encube: large-scale comparative visulisation of sets of multidimensional data"
 	},
-	"github/ComputationalPhysiology/simcardems": {
-	"id": "github/ComputationalPhysiology/simcardems",
-	"title": "github/ComputationalPhysiology/simcardems",
-	"url": " https://rseng.github.io/software/repository/github/ComputationalPhysiology/simcardems",
-	"content": "Simula Cardiac ElectroMechanics Solver"
+	"github/glis-glis/loci": {
+	"id": "github/glis-glis/loci",
+	"title": "github/glis-glis/loci",
+	"url": " https://rseng.github.io/software/repository/github/glis-glis/loci",
+	"content": "Smooth Cubic Multivariate Local Interpolations"
 	},
-	"github/dfm/exopop": {
-	"id": "github/dfm/exopop",
-	"title": "github/dfm/exopop",
-	"url": " https://rseng.github.io/software/repository/github/dfm/exopop",
-	"content": "Inferring the population of exoplanets"
+	"github/BoPeng/simuPOP": {
+	"id": "github/BoPeng/simuPOP",
+	"title": "github/BoPeng/simuPOP",
+	"url": " https://rseng.github.io/software/repository/github/BoPeng/simuPOP",
+	"content": "A general-purpose forward-time population genetics simulation environment."
 	},
-	"github/dfm/photodynam": {
-	"id": "github/dfm/photodynam",
-	"title": "github/dfm/photodynam",
-	"url": " https://rseng.github.io/software/repository/github/dfm/photodynam",
-	"content": "Photodynamical code for fitting the light curves of multiple body systems written by Josh Carter"
+	"github/IPIS-XieLei/CNTSeg": {
+	"id": "github/IPIS-XieLei/CNTSeg",
+	"title": "github/IPIS-XieLei/CNTSeg",
+	"url": " https://rseng.github.io/software/repository/github/IPIS-XieLei/CNTSeg",
+	"content": "CNTSeg: A multimodal deep-learning-based network for cranial nerves tract segmentation"
 	},
-	"github/dfm/corner.py": {
-	"id": "github/dfm/corner.py",
-	"title": "github/dfm/corner.py",
-	"url": " https://rseng.github.io/software/repository/github/dfm/corner.py",
-	"content": "Make some beautiful corner plots"
+	"github/cupy/cupy": {
+	"id": "github/cupy/cupy",
+	"title": "github/cupy/cupy",
+	"url": " https://rseng.github.io/software/repository/github/cupy/cupy",
+	"content": "NumPy-like API accelerated with CUDA"
 	},
-	"github/dfm/ketu": {
-	"id": "github/dfm/ketu",
-	"title": "github/dfm/ketu",
-	"url": " https://rseng.github.io/software/repository/github/dfm/ketu",
-	"content": "I can haz planetz?"
+	"github/simoncasassus/ConeRot": {
+	"id": "github/simoncasassus/ConeRot",
+	"title": "github/simoncasassus/ConeRot",
+	"url": " https://rseng.github.io/software/repository/github/simoncasassus/ConeRot",
+	"content": "None"
 	},
-	"github/dfm/celerite": {
-	"id": "github/dfm/celerite",
-	"title": "github/dfm/celerite",
-	"url": " https://rseng.github.io/software/repository/github/dfm/celerite",
-	"content": "Scalable 1D Gaussian Processes in C++, Python, and Julia"
+	"github/fritzsedlazeck/SURVIVOR": {
+	"id": "github/fritzsedlazeck/SURVIVOR",
+	"title": "github/fritzsedlazeck/SURVIVOR",
+	"url": " https://rseng.github.io/software/repository/github/fritzsedlazeck/SURVIVOR",
+	"content": "Toolset for SV simulation, comparison and filtering"
 	},
-	"github/MMV-Lab/mmv_im2im": {
-	"id": "github/MMV-Lab/mmv_im2im",
-	"title": "github/MMV-Lab/mmv_im2im",
-	"url": " https://rseng.github.io/software/repository/github/MMV-Lab/mmv_im2im",
-	"content": "Python package for deep learning based image to image transformation"
+	"github/fritzsedlazeck/Sniffles": {
+	"id": "github/fritzsedlazeck/Sniffles",
+	"title": "github/fritzsedlazeck/Sniffles",
+	"url": " https://rseng.github.io/software/repository/github/fritzsedlazeck/Sniffles",
+	"content": "Structural variation caller using third generation sequencing"
 	},
-	"github/olivares-j/Kalkayotl": {
-	"id": "github/olivares-j/Kalkayotl",
-	"title": "github/olivares-j/Kalkayotl",
-	"url": " https://rseng.github.io/software/repository/github/olivares-j/Kalkayotl",
-	"content": "This repository contains a code to infer distances to stellar clusters and its stars from  Gaia parallaxes."
+	"github/cochran4/GEMB": {
+	"id": "github/cochran4/GEMB",
+	"title": "github/cochran4/GEMB",
+	"url": " https://rseng.github.io/software/repository/github/cochran4/GEMB",
+	"content": "Gene-set enrichment with math biology"
 	},
-	"github/landlab/landlab": {
-	"id": "github/landlab/landlab",
-	"title": "github/landlab/landlab",
-	"url": " https://rseng.github.io/software/repository/github/landlab/landlab",
-	"content": "Landlab codebase, wiki, and tests"
+	"github/BasilioRuiz/SIR-code": {
+	"id": "github/BasilioRuiz/SIR-code",
+	"title": "github/BasilioRuiz/SIR-code",
+	"url": " https://rseng.github.io/software/repository/github/BasilioRuiz/SIR-code",
+	"content": "None"
 	},
-	"github/BiomedSciAI/fuse-med-ml": {
-	"id": "github/BiomedSciAI/fuse-med-ml",
-	"title": "github/BiomedSciAI/fuse-med-ml",
-	"url": " https://rseng.github.io/software/repository/github/BiomedSciAI/fuse-med-ml",
-	"content": "A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)"
+	"github/pmvreeswijk/ZOGY": {
+	"id": "github/pmvreeswijk/ZOGY",
+	"title": "github/pmvreeswijk/ZOGY",
+	"url": " https://rseng.github.io/software/repository/github/pmvreeswijk/ZOGY",
+	"content": "a Python implementation of proper image subtraction (Zackay, Ofek &amp; Gal-Yam 2016, ApJ, 830, 27)"
 	},
-	"github/marcelm/tinyalign": {
-	"id": "github/marcelm/tinyalign",
-	"title": "github/marcelm/tinyalign",
-	"url": " https://rseng.github.io/software/repository/github/marcelm/tinyalign",
-	"content": "numerical representation of differences between strings"
+	"github/pmvreeswijk/BlackBOX": {
+	"id": "github/pmvreeswijk/BlackBOX",
+	"title": "github/pmvreeswijk/BlackBOX",
+	"url": " https://rseng.github.io/software/repository/github/pmvreeswijk/BlackBOX",
+	"content": "image processing sofware specifically for the reduction of BlackGEM and MeerLICHT images"
 	},
-	"github/marcelm/cutadapt": {
-	"id": "github/marcelm/cutadapt",
-	"title": "github/marcelm/cutadapt",
-	"url": " https://rseng.github.io/software/repository/github/marcelm/cutadapt",
-	"content": "finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads."
+	"github/mbursa/disk-models": {
+	"id": "github/mbursa/disk-models",
+	"title": "github/mbursa/disk-models",
+	"url": " https://rseng.github.io/software/repository/github/mbursa/disk-models",
+	"content": "Accretion disk radial structure models"
 	},
-	"github/marcelm/alignlib": {
-	"id": "github/marcelm/alignlib",
-	"title": "github/marcelm/alignlib",
-	"url": " https://rseng.github.io/software/repository/github/marcelm/alignlib",
-	"content": "edit and Hamming distances for biological sequences"
+	"github/mbursa/sim5": {
+	"id": "github/mbursa/sim5",
+	"title": "github/mbursa/sim5",
+	"url": " https://rseng.github.io/software/repository/github/mbursa/sim5",
+	"content": "Library for ray-tracing and radiation transport in general relativity"
 	},
-	"github/marcelm/dnaio": {
-	"id": "github/marcelm/dnaio",
-	"title": "github/marcelm/dnaio",
-	"url": " https://rseng.github.io/software/repository/github/marcelm/dnaio",
-	"content": "Read and write FASTQ and FASTA efficiently from Python"
+	"github/nlesc/embodied-emotions-scripts": {
+	"id": "github/nlesc/embodied-emotions-scripts",
+	"title": "github/nlesc/embodied-emotions-scripts",
+	"url": " https://rseng.github.io/software/repository/github/nlesc/embodied-emotions-scripts",
+	"content": "None"
 	},
-	"github/bareid/cosmoxi2d": {
-	"id": "github/bareid/cosmoxi2d",
-	"title": "github/bareid/cosmoxi2d",
-	"url": " https://rseng.github.io/software/repository/github/bareid/cosmoxi2d",
-	"content": "Evaluates the theoretical prediction for correlation function multipoles based on perturbation theory evaluation of the input real space clustering and velocity statistics to the Gaussian streaming model."
+	"github/nlesc/scriptcwl": {
+	"id": "github/nlesc/scriptcwl",
+	"title": "github/nlesc/scriptcwl",
+	"url": " https://rseng.github.io/software/repository/github/nlesc/scriptcwl",
+	"content": "Create cwl workflows by writing a simple Python script"
 	},
-	"github/scikit-image/scikit-image": {
-	"id": "github/scikit-image/scikit-image",
-	"title": "github/scikit-image/scikit-image",
-	"url": " https://rseng.github.io/software/repository/github/scikit-image/scikit-image",
-	"content": "Image processing in Python"
+	"github/uwssg/APS": {
+	"id": "github/uwssg/APS",
+	"title": "github/uwssg/APS",
+	"url": " https://rseng.github.io/software/repository/github/uwssg/APS",
+	"content": "an alternative to Markov chain Monte Carlo"
 	},
-	"github/CosmoLike/CosmoCov": {
-	"id": "github/CosmoLike/CosmoCov",
-	"title": "github/CosmoLike/CosmoCov",
-	"url": " https://rseng.github.io/software/repository/github/CosmoLike/CosmoCov",
-	"content": "Configuration Space Covariances for Projected Galaxy 2-Point Statistics"
+	"github/LucIJspeert/star_shadow": {
+	"id": "github/LucIJspeert/star_shadow",
+	"title": "github/LucIJspeert/star_shadow",
+	"url": " https://rseng.github.io/software/repository/github/LucIJspeert/star_shadow",
+	"content": "Recipe to fully automatically analyse eclipsing binary light curves and find eccentricity and more"
 	},
-	"github/AliYoussef96/parazitCUB": {
-	"id": "github/AliYoussef96/parazitCUB",
-	"title": "github/AliYoussef96/parazitCUB",
-	"url": " https://rseng.github.io/software/repository/github/AliYoussef96/parazitCUB",
-	"content": "parazitCUB streamlines the process of investigating the adaptations of parasites&#39; Codon Usage Bias (CUB) within the R environment"
+	"github/LucIJspeert/eclipsr": {
+	"id": "github/LucIJspeert/eclipsr",
+	"title": "github/LucIJspeert/eclipsr",
+	"url": " https://rseng.github.io/software/repository/github/LucIJspeert/eclipsr",
+	"content": "Recipe to fully automatically find individual eclipses in light curves, determine ephemerides and more"
 	},
-	"github/Huang-CL/Magrathea": {
-	"id": "github/Huang-CL/Magrathea",
-	"title": "github/Huang-CL/Magrathea",
-	"url": " https://rseng.github.io/software/repository/github/Huang-CL/Magrathea",
+	"github/jeaadams/ExoPix": {
+	"id": "github/jeaadams/ExoPix",
+	"title": "github/jeaadams/ExoPix",
+	"url": " https://rseng.github.io/software/repository/github/jeaadams/ExoPix",
 	"content": "None"
 	},
-	"github/bblodfon/emba": {
-	"id": "github/bblodfon/emba",
-	"title": "github/bblodfon/emba",
-	"url": " https://rseng.github.io/software/repository/github/bblodfon/emba",
-	"content": "Ensemble Model Biomarker Analysis R package"
+	"github/martinsparre/XSHPipelineManager": {
+	"id": "github/martinsparre/XSHPipelineManager",
+	"title": "github/martinsparre/XSHPipelineManager",
+	"url": " https://rseng.github.io/software/repository/github/martinsparre/XSHPipelineManager",
+	"content": "A script to run the X-shooter pipeline"
 	},
-	"github/ESMValGroup/ESMValTool": {
-	"id": "github/ESMValGroup/ESMValTool",
-	"title": "github/ESMValGroup/ESMValTool",
-	"url": " https://rseng.github.io/software/repository/github/ESMValGroup/ESMValTool",
-	"content": "ESMValTool: A community diagnostic and performance metrics tool for routine evaluation of Earth system models in CMIP "
+	"github/PeterBartram/TES": {
+	"id": "github/PeterBartram/TES",
+	"title": "github/PeterBartram/TES",
+	"url": " https://rseng.github.io/software/repository/github/PeterBartram/TES",
+	"content": "Terrestrial Exoplanet Simulator public repository"
 	},
-	"github/ESMValGroup/ESMValCore": {
-	"id": "github/ESMValGroup/ESMValCore",
-	"title": "github/ESMValGroup/ESMValCore",
-	"url": " https://rseng.github.io/software/repository/github/ESMValGroup/ESMValCore",
-	"content": "ESMValTool Core: core functionalities for the ESMValTool"
+	"github/atakan/KeplerSolver": {
+	"id": "github/atakan/KeplerSolver",
+	"title": "github/atakan/KeplerSolver",
+	"url": " https://rseng.github.io/software/repository/github/atakan/KeplerSolver",
+	"content": "A code for solving Kepler&#39;s equation, with arbitrary epoch."
 	},
-	"github/MarioRomeroC/Mixclask": {
-	"id": "github/MarioRomeroC/Mixclask",
-	"title": "github/MarioRomeroC/Mixclask",
-	"url": " https://rseng.github.io/software/repository/github/MarioRomeroC/Mixclask",
-	"content": "Mixing cloudy and skirt"
+	"github/microbioinformatic/Co-PATHOgenex": {
+	"id": "github/microbioinformatic/Co-PATHOgenex",
+	"title": "github/microbioinformatic/Co-PATHOgenex",
+	"url": " https://rseng.github.io/software/repository/github/microbioinformatic/Co-PATHOgenex",
+	"content": "Supporting scripts and files for R shiny app Co-PATHOgenex"
 	},
-	"github/mgieles/limepy": {
-	"id": "github/mgieles/limepy",
-	"title": "github/mgieles/limepy",
-	"url": " https://rseng.github.io/software/repository/github/mgieles/limepy",
-	"content": "Lowered Isothermal Model Explorer in Python"
+	"github/streamlit/streamlit": {
+	"id": "github/streamlit/streamlit",
+	"title": "github/streamlit/streamlit",
+	"url": " https://rseng.github.io/software/repository/github/streamlit/streamlit",
+	"content": "Streamlit — The fastest way to build data apps in Python"
 	},
-	"github/fusk-kpu/StressResponseGenesAtlas": {
-	"id": "github/fusk-kpu/StressResponseGenesAtlas",
-	"title": "github/fusk-kpu/StressResponseGenesAtlas",
-	"url": " https://rseng.github.io/software/repository/github/fusk-kpu/StressResponseGenesAtlas",
-	"content": "None"
+	"github/biomedia-mira/masf": {
+	"id": "github/biomedia-mira/masf",
+	"title": "github/biomedia-mira/masf",
+	"url": " https://rseng.github.io/software/repository/github/biomedia-mira/masf",
+	"content": "Domain Generalization via Model-Agnostic Learning of Semantic Features"
 	},
-	"github/linbox-team/linbox": {
-	"id": "github/linbox-team/linbox",
-	"title": "github/linbox-team/linbox",
-	"url": " https://rseng.github.io/software/repository/github/linbox-team/linbox",
-	"content": "LinBox - C++ library for exact, high-performance linear algebra "
+	"github/biomedia-mira/blast-ct": {
+	"id": "github/biomedia-mira/blast-ct",
+	"title": "github/biomedia-mira/blast-ct",
+	"url": " https://rseng.github.io/software/repository/github/biomedia-mira/blast-ct",
+	"content": "Brain Lesion Analysis and Segmentation Tool for Computed Tomography"
 	},
-	"github/DeepRegNet/DeepReg": {
-	"id": "github/DeepRegNet/DeepReg",
-	"title": "github/DeepRegNet/DeepReg",
-	"url": " https://rseng.github.io/software/repository/github/DeepRegNet/DeepReg",
-	"content": "Medical image registration using deep learning"
+	"github/biomedia-mira/istn": {
+	"id": "github/biomedia-mira/istn",
+	"title": "github/biomedia-mira/istn",
+	"url": " https://rseng.github.io/software/repository/github/biomedia-mira/istn",
+	"content": "Image-and-Spatial Transformer Networks"
 	},
-	"github/szymon-datalions/pyinterpolate": {
-	"id": "github/szymon-datalions/pyinterpolate",
-	"title": "github/szymon-datalions/pyinterpolate",
-	"url": " https://rseng.github.io/software/repository/github/szymon-datalions/pyinterpolate",
-	"content": "Package with spatial analysis and spatial prediction tools"
+	"github/biomedia-mira/deepscm": {
+	"id": "github/biomedia-mira/deepscm",
+	"title": "github/biomedia-mira/deepscm",
+	"url": " https://rseng.github.io/software/repository/github/biomedia-mira/deepscm",
+	"content": "Repository for Deep Structural Causal Models for Tractable Counterfactual Inference"
 	},
-	"github/RosettaCommons/RoseTTAFold": {
-	"id": "github/RosettaCommons/RoseTTAFold",
-	"title": "github/RosettaCommons/RoseTTAFold",
-	"url": " https://rseng.github.io/software/repository/github/RosettaCommons/RoseTTAFold",
-	"content": "This package contains deep learning models and related scripts for RoseTTAFold"
+	"github/biomedia-mira/drop2": {
+	"id": "github/biomedia-mira/drop2",
+	"title": "github/biomedia-mira/drop2",
+	"url": " https://rseng.github.io/software/repository/github/biomedia-mira/drop2",
+	"content": "drop2 - intensity-based image registration"
 	},
-	"github/RosettaCommons/RFDesign": {
-	"id": "github/RosettaCommons/RFDesign",
-	"title": "github/RosettaCommons/RFDesign",
-	"url": " https://rseng.github.io/software/repository/github/RosettaCommons/RFDesign",
-	"content": "Protein hallucination and inpainting with RoseTTAFold"
+	"github/tresoldi/ngesh": {
+	"id": "github/tresoldi/ngesh",
+	"title": "github/tresoldi/ngesh",
+	"url": " https://rseng.github.io/software/repository/github/tresoldi/ngesh",
+	"content": "A Python library for generating random phylogenetic trees and related data"
 	},
-	"github/ratschlab/metagraph": {
-	"id": "github/ratschlab/metagraph",
-	"title": "github/ratschlab/metagraph",
-	"url": " https://rseng.github.io/software/repository/github/ratschlab/metagraph",
-	"content": "Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly"
+	"github/astronomical-data-processing/RAPP": {
+	"id": "github/astronomical-data-processing/RAPP",
+	"title": "github/astronomical-data-processing/RAPP",
+	"url": " https://rseng.github.io/software/repository/github/astronomical-data-processing/RAPP",
+	"content": "None"
 	},
-	"github/cbottrell/realsim_ifs": {
-	"id": "github/cbottrell/realsim_ifs",
-	"title": "github/cbottrell/realsim_ifs",
-	"url": " https://rseng.github.io/software/repository/github/cbottrell/realsim_ifs",
-	"content": "Realistic synthetic integral field spectrscopy of galaxies from numerical simulations."
+	"github/JonasRieger/ldaPrototype": {
+	"id": "github/JonasRieger/ldaPrototype",
+	"title": "github/JonasRieger/ldaPrototype",
+	"url": " https://rseng.github.io/software/repository/github/JonasRieger/ldaPrototype",
+	"content": "Determine a Prototype from a number of runs of Latent Dirichlet Allocation (LDA) measuring its similarities with S-CLOP: A procedure to select the LDA run with highest mean pairwise similarity, which is measured by S-CLOP (Similarity of multiple sets by Clustering with Local Pruning), to all other runs."
 	},
-	"github/cbottrell/RealSim": {
-	"id": "github/cbottrell/RealSim",
-	"title": "github/cbottrell/RealSim",
-	"url": " https://rseng.github.io/software/repository/github/cbottrell/RealSim",
-	"content": "RealSim is the statistical observational realism suite described in Bottrell et al 2017ab and made public in Bottrell et al 2019b."
+	"github/PengyiZhang/DRR4Covid": {
+	"id": "github/PengyiZhang/DRR4Covid",
+	"title": "github/PengyiZhang/DRR4Covid",
+	"url": " https://rseng.github.io/software/repository/github/PengyiZhang/DRR4Covid",
+	"content": "DRR4Covid: Learning Automated COVID-19 Infection Segmentation from Digitally Reconstructed Radiographs"
 	},
-	"github/DKMS/hapl-o-Mat_WinBin": {
-	"id": "github/DKMS/hapl-o-Mat_WinBin",
-	"title": "github/DKMS/hapl-o-Mat_WinBin",
-	"url": " https://rseng.github.io/software/repository/github/DKMS/hapl-o-Mat_WinBin",
-	"content": "Windows binary version of the Graphical User Interface to Hapl-o-Mat. Includes also a binary version of the command line interface."
+	"github/sanger-pathogens/gubbins": {
+	"id": "github/sanger-pathogens/gubbins",
+	"title": "github/sanger-pathogens/gubbins",
+	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/gubbins",
+	"content": "Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins"
 	},
-	"github/cmbant/getdist": {
-	"id": "github/cmbant/getdist",
-	"title": "github/cmbant/getdist",
-	"url": " https://rseng.github.io/software/repository/github/cmbant/getdist",
-	"content": "MCMC sample analysis, kernel densities, plotting, and GUI"
+	"github/sanger-pathogens/iva": {
+	"id": "github/sanger-pathogens/iva",
+	"title": "github/sanger-pathogens/iva",
+	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/iva",
+	"content": "de novo virus assembler of Illumina paired reads"
 	},
-	"github/ngbusca/QuasarNET": {
-	"id": "github/ngbusca/QuasarNET",
-	"title": "github/ngbusca/QuasarNET",
-	"url": " https://rseng.github.io/software/repository/github/ngbusca/QuasarNET",
-	"content": "None"
+	"github/sanger-pathogens/ariba": {
+	"id": "github/sanger-pathogens/ariba",
+	"title": "github/sanger-pathogens/ariba",
+	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/ariba",
+	"content": "Antimicrobial Resistance Identification By Assembly"
 	},
-	"github/andymummeryastro/tidalspin": {
-	"id": "github/andymummeryastro/tidalspin",
-	"title": "github/andymummeryastro/tidalspin",
-	"url": " https://rseng.github.io/software/repository/github/andymummeryastro/tidalspin",
-	"content": "Python package for constraining black hole spins using the properties of relativistic tidal forces"
+	"github/sanger-pathogens/Artemis": {
+	"id": "github/sanger-pathogens/Artemis",
+	"title": "github/sanger-pathogens/Artemis",
+	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/Artemis",
+	"content": "Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation"
 	},
-	"github/auranic/ClinTrajan": {
-	"id": "github/auranic/ClinTrajan",
-	"title": "github/auranic/ClinTrajan",
-	"url": " https://rseng.github.io/software/repository/github/auranic/ClinTrajan",
-	"content": "Finding trajectories, bifurcations and quantifying pseudotime in large clinical datasets"
+	"github/sanger-pathogens/assembly-stats": {
+	"id": "github/sanger-pathogens/assembly-stats",
+	"title": "github/sanger-pathogens/assembly-stats",
+	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/assembly-stats",
+	"content": "Get assembly statistics from FASTA and FASTQ files"
 	},
-	"github/cc646201081/CircSI-SSL": {
-	"id": "github/cc646201081/CircSI-SSL",
-	"title": "github/cc646201081/CircSI-SSL",
-	"url": " https://rseng.github.io/software/repository/github/cc646201081/CircSI-SSL",
-	"content": "None"
+	"github/sanger-pathogens/pymummer": {
+	"id": "github/sanger-pathogens/pymummer",
+	"title": "github/sanger-pathogens/pymummer",
+	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/pymummer",
+	"content": "Python3 module for running MUMmer and reading the output"
 	},
-	"github/MehrnooshTahani/MappingBLOS_MolecularClouds": {
-	"id": "github/MehrnooshTahani/MappingBLOS_MolecularClouds",
-	"title": "github/MehrnooshTahani/MappingBLOS_MolecularClouds",
-	"url": " https://rseng.github.io/software/repository/github/MehrnooshTahani/MappingBLOS_MolecularClouds",
-	"content": "Software to determine line of sight magnetic fields of molecular clouds (Tahani et al. 2018)"
+	"github/sanger-pathogens/circlator": {
+	"id": "github/sanger-pathogens/circlator",
+	"title": "github/sanger-pathogens/circlator",
+	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/circlator",
+	"content": "Circlator is a tool to circularize genome assemblies. The input is a genome assembly in FASTA format and corrected PacBio or nanopore reads in FASTA or FASTQ format. Circlator will attempt to identify each circular sequence and output a linearised version of it. It does this by assembling all reads that map to contig ends and comparing the resulting contigs with the input assembly."
 	},
-	"github/SNOwGLoBES/snowglobes": {
-	"id": "github/SNOwGLoBES/snowglobes",
-	"title": "github/SNOwGLoBES/snowglobes",
-	"url": " https://rseng.github.io/software/repository/github/SNOwGLoBES/snowglobes",
-	"content": "SNOwGLoBES code:  SuperNova Observatories with GLoBES"
+	"github/sanger-pathogens/Fastaq": {
+	"id": "github/sanger-pathogens/Fastaq",
+	"title": "github/sanger-pathogens/Fastaq",
+	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/Fastaq",
+	"content": "Python3 scripts to manipulate FASTA and FASTQ files"
 	},
-	"github/jessecambon/tidygeocoder": {
-	"id": "github/jessecambon/tidygeocoder",
-	"title": "github/jessecambon/tidygeocoder",
-	"url": " https://rseng.github.io/software/repository/github/jessecambon/tidygeocoder",
-	"content": "Geocoding Made Easy"
+	"github/sanger-pathogens/Bio-Tradis": {
+	"id": "github/sanger-pathogens/Bio-Tradis",
+	"title": "github/sanger-pathogens/Bio-Tradis",
+	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/Bio-Tradis",
+	"content": "A set of tools to analyse the output from TraDIS analyses"
 	},
-	"github/voutcn/megahit": {
-	"id": "github/voutcn/megahit",
-	"title": "github/voutcn/megahit",
-	"url": " https://rseng.github.io/software/repository/github/voutcn/megahit",
-	"content": "Ultra-fast and memory-efficient (meta-)genome assembler"
+	"github/sanger-pathogens/Roary": {
+	"id": "github/sanger-pathogens/Roary",
+	"title": "github/sanger-pathogens/Roary",
+	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/Roary",
+	"content": "Rapid large-scale prokaryote pan genome analysis"
 	},
-	"github/tkzeng/Pangolin": {
-	"id": "github/tkzeng/Pangolin",
-	"title": "github/tkzeng/Pangolin",
-	"url": " https://rseng.github.io/software/repository/github/tkzeng/Pangolin",
-	"content": "Pangolin is a deep-learning method for predicting splice site strengths."
+	"github/sanger-pathogens/snp-sites": {
+	"id": "github/sanger-pathogens/snp-sites",
+	"title": "github/sanger-pathogens/snp-sites",
+	"url": " https://rseng.github.io/software/repository/github/sanger-pathogens/snp-sites",
+	"content": "Finds SNP sites from a multi-FASTA alignment file"
 	},
-	"github/miriamkw/GluPredKit": {
-	"id": "github/miriamkw/GluPredKit",
-	"title": "github/miriamkw/GluPredKit",
-	"url": " https://rseng.github.io/software/repository/github/miriamkw/GluPredKit",
-	"content": "GluPredKit aims to make blood glucose model training and prediction more accessible. "
+	"github/jbattat/pep_core": {
+	"id": "github/jbattat/pep_core",
+	"title": "github/jbattat/pep_core",
+	"url": " https://rseng.github.io/software/repository/github/jbattat/pep_core",
+	"content": "PEP: Planetary Ephemeris Program core files"
 	},
-	"github/bpp/bpp": {
-	"id": "github/bpp/bpp",
-	"title": "github/bpp/bpp",
-	"url": " https://rseng.github.io/software/repository/github/bpp/bpp",
-	"content": "implements a versatile high-performance version of the BPP software"
+	"github/xastprl/darsakx": {
+	"id": "github/xastprl/darsakx",
+	"title": "github/xastprl/darsakx",
+	"url": " https://rseng.github.io/software/repository/github/xastprl/darsakx",
+	"content": "DarsakX is a Python package that can be used to design and analyze the imaging performance of a multi-shell X-ray telescope with an optical configuration similar to Wolter-1 optics for astronomical purposes. "
 	},
-	"github/NuGrid/NuPyCEE": {
-	"id": "github/NuGrid/NuPyCEE",
-	"title": "github/NuGrid/NuPyCEE",
-	"url": " https://rseng.github.io/software/repository/github/NuGrid/NuPyCEE",
-	"content": "You can find the website of NuPyCEE at "
+	"github/CavendishAstrophysics/anmap": {
+	"id": "github/CavendishAstrophysics/anmap",
+	"title": "github/CavendishAstrophysics/anmap",
+	"url": " https://rseng.github.io/software/repository/github/CavendishAstrophysics/anmap",
+	"content": "MRAO image and data analysis system"
 	},
-	"github/tamarervin/SolAster": {
-	"id": "github/tamarervin/SolAster",
-	"title": "github/tamarervin/SolAster",
-	"url": " https://rseng.github.io/software/repository/github/tamarervin/SolAster",
-	"content": "Python package to independently derive &#39;Sun-as-a-star&#39; radial velocity variations."
+	"github/CavendishAstrophysics/postmortem": {
+	"id": "github/CavendishAstrophysics/postmortem",
+	"title": "github/CavendishAstrophysics/postmortem",
+	"url": " https://rseng.github.io/software/repository/github/CavendishAstrophysics/postmortem",
+	"content": " Visibility data reduction and map making package from MRAO"
 	},
-	"github/FourierFlows/GeophysicalFlows.jl": {
-	"id": "github/FourierFlows/GeophysicalFlows.jl",
-	"title": "github/FourierFlows/GeophysicalFlows.jl",
-	"url": " https://rseng.github.io/software/repository/github/FourierFlows/GeophysicalFlows.jl",
-	"content": "Geophysical fluid dynamics pseudospectral solvers with Julia and FourierFlows.jl."
+	"github/MariaTsantaki/FASMA-synthesis": {
+	"id": "github/MariaTsantaki/FASMA-synthesis",
+	"title": "github/MariaTsantaki/FASMA-synthesis",
+	"url": " https://rseng.github.io/software/repository/github/MariaTsantaki/FASMA-synthesis",
+	"content": "Python code for stellar spectral analysis"
 	},
-	"github/PhilippJunk/homelette": {
-	"id": "github/PhilippJunk/homelette",
-	"title": "github/PhilippJunk/homelette",
-	"url": " https://rseng.github.io/software/repository/github/PhilippJunk/homelette",
-	"content": "A unified and modular interface to homology modelling software"
+	"github/tzhu-bio/UMI-ATAC-seq": {
+	"id": "github/tzhu-bio/UMI-ATAC-seq",
+	"title": "github/tzhu-bio/UMI-ATAC-seq",
+	"url": " https://rseng.github.io/software/repository/github/tzhu-bio/UMI-ATAC-seq",
+	"content": "None"
 	},
-	"github/morisUtokyo/uTR": {
-	"id": "github/morisUtokyo/uTR",
-	"title": "github/morisUtokyo/uTR",
-	"url": " https://rseng.github.io/software/repository/github/morisUtokyo/uTR",
-	"content": "Detect key Units in mosaic Tandem Repeats from representative reads from the same locus "
+	"github/peikuan/WBBC": {
+	"id": "github/peikuan/WBBC",
+	"title": "github/peikuan/WBBC",
+	"url": " https://rseng.github.io/software/repository/github/peikuan/WBBC",
+	"content": "Westlake BioBank for Chinese pilot project"
 	},
-	"github/cboursnell/crb-blast": {
-	"id": "github/cboursnell/crb-blast",
-	"title": "github/cboursnell/crb-blast",
-	"url": " https://rseng.github.io/software/repository/github/cboursnell/crb-blast",
-	"content": "Conditional Reciprocal Best Blast"
+	"github/lightning-project/lightning": {
+	"id": "github/lightning-project/lightning",
+	"title": "github/lightning-project/lightning",
+	"url": " https://rseng.github.io/software/repository/github/lightning-project/lightning",
+	"content": "Lightning: Fast data processing using GPUs on distributed platforms"
 	},
-	"github/exomishra/kobe": {
-	"id": "github/exomishra/kobe",
-	"title": "github/exomishra/kobe",
-	"url": " https://rseng.github.io/software/repository/github/exomishra/kobe",
-	"content": "A program to add geometrical limitations and detection biases of a transit survey to theoretical planetary systems."
+	"github/mzytnicki/srnaMapper": {
+	"id": "github/mzytnicki/srnaMapper",
+	"title": "github/mzytnicki/srnaMapper",
+	"url": " https://rseng.github.io/software/repository/github/mzytnicki/srnaMapper",
+	"content": "Mapping small RNA data to a genome."
 	},
-	"github/ANTsX/ANTs": {
-	"id": "github/ANTsX/ANTs",
-	"title": "github/ANTsX/ANTs",
-	"url": " https://rseng.github.io/software/repository/github/ANTsX/ANTs",
-	"content": "Advanced Normalization Tools (ANTs)  "
+	"github/suchanek/proteusPy": {
+	"id": "github/suchanek/proteusPy",
+	"title": "github/suchanek/proteusPy",
+	"url": " https://rseng.github.io/software/repository/github/suchanek/proteusPy",
+	"content": "A package for the modeling and analysis of proteins of known structure"
 	},
-	"github/adrientaudiere/MiscMetabar": {
-	"id": "github/adrientaudiere/MiscMetabar",
-	"title": "github/adrientaudiere/MiscMetabar",
-	"url": " https://rseng.github.io/software/repository/github/adrientaudiere/MiscMetabar",
-	"content": "R package MiscMetabar: Miscellaneous functions for metabarcoding analysis"
+	"github/USNavalResearchLaboratory/eispac": {
+	"id": "github/USNavalResearchLaboratory/eispac",
+	"title": "github/USNavalResearchLaboratory/eispac",
+	"url": " https://rseng.github.io/software/repository/github/USNavalResearchLaboratory/eispac",
+	"content": "Read the Docs"
 	},
-	"github/HingeAssembler/HINGE": {
-	"id": "github/HingeAssembler/HINGE",
-	"title": "github/HingeAssembler/HINGE",
-	"url": " https://rseng.github.io/software/repository/github/HingeAssembler/HINGE",
-	"content": "Software accompanying &#34;HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution&#34;"
+	"github/DistrictDataLabs/yellowbrick": {
+	"id": "github/DistrictDataLabs/yellowbrick",
+	"title": "github/DistrictDataLabs/yellowbrick",
+	"url": " https://rseng.github.io/software/repository/github/DistrictDataLabs/yellowbrick",
+	"content": "Visual analysis and diagnostic tools to facilitate machine learning model selection."
 	},
-	"github/uw-comphys/opencmp": {
-	"id": "github/uw-comphys/opencmp",
-	"title": "github/uw-comphys/opencmp",
-	"url": " https://rseng.github.io/software/repository/github/uw-comphys/opencmp",
-	"content": "OpenCMP is a computational multiphysics software package based on the finite element method. It is primarily intended for physicochemical processes involving significant convective flow."
+	"github/fred3m/toyz": {
+	"id": "github/fred3m/toyz",
+	"title": "github/fred3m/toyz",
+	"url": " https://rseng.github.io/software/repository/github/fred3m/toyz",
+	"content": "Toyz for Data Analysis and Reduction"
 	},
-	"github/uw-comphys/openccm": {
-	"id": "github/uw-comphys/openccm",
-	"title": "github/uw-comphys/openccm",
-	"url": " https://rseng.github.io/software/repository/github/uw-comphys/openccm",
-	"content": "OpenCCM is a CFD-based compartment modelling software package. It is primarily intended for convection dominated reactive flows which feature a weak or one-way coupling between the reactive species and the carrier fluid, i.e. the reaction does not substantially influence the fluid flow over the course of the simulation. "
+	"github/LucaMalavolta/CCFpams": {
+	"id": "github/LucaMalavolta/CCFpams",
+	"title": "github/LucaMalavolta/CCFpams",
+	"url": " https://rseng.github.io/software/repository/github/LucaMalavolta/CCFpams",
+	"content": "Atmospheric Stellar Parameters from Cross-Correlation Functions for HARPS &amp; HARPS-N"
 	},
-	"github/uw-comphys/shapelets": {
-	"id": "github/uw-comphys/shapelets",
-	"title": "github/uw-comphys/shapelets",
-	"url": " https://rseng.github.io/software/repository/github/uw-comphys/shapelets",
-	"content": "shapelets is a python package that implements several shapelet functions and some of their significant applications in science and astronomy."
+	"github/LucaMalavolta/PyORBIT": {
+	"id": "github/LucaMalavolta/PyORBIT",
+	"title": "github/LucaMalavolta/PyORBIT",
+	"url": " https://rseng.github.io/software/repository/github/LucaMalavolta/PyORBIT",
+	"content": "PyORBIT: a code for exoplanet orbital parameters and stellar activity."
 	},
-	"github/gerddie/maxflow": {
-	"id": "github/gerddie/maxflow",
-	"title": "github/gerddie/maxflow",
-	"url": " https://rseng.github.io/software/repository/github/gerddie/maxflow",
-	"content": "A library that implements the maxflow-mincut algorithm. "
+	"github/MREYE-LUMC/ZOSPy": {
+	"id": "github/MREYE-LUMC/ZOSPy",
+	"title": "github/MREYE-LUMC/ZOSPy",
+	"url": " https://rseng.github.io/software/repository/github/MREYE-LUMC/ZOSPy",
+	"content": "Wrapper around the Zemax OpticStudio API. Provides a more pythonic and intuitive way to interact with the ZOS-API through python using a .NET connection. "
 	},
-	"github/Balaje/iceFem": {
-	"id": "github/Balaje/iceFem",
-	"title": "github/Balaje/iceFem",
-	"url": " https://rseng.github.io/software/repository/github/Balaje/iceFem",
-	"content": "Contains FreeFem source codes for modelling wave induced ice-shelf vibrations"
+	"github/PyDL/cat-puma": {
+	"id": "github/PyDL/cat-puma",
+	"title": "github/PyDL/cat-puma",
+	"url": " https://rseng.github.io/software/repository/github/PyDL/cat-puma",
+	"content": "CME Arrival Time Prediction Using Machine learning Algorithms"
 	},
-	"github/c-zhou/yahs": {
-	"id": "github/c-zhou/yahs",
-	"title": "github/c-zhou/yahs",
-	"url": " https://rseng.github.io/software/repository/github/c-zhou/yahs",
-	"content": "Yet another Hi-C scaffolding tool"
+	"github/neeravkaushal/RIDs-in-WCDs": {
+	"id": "github/neeravkaushal/RIDs-in-WCDs",
+	"title": "github/neeravkaushal/RIDs-in-WCDs",
+	"url": " https://rseng.github.io/software/repository/github/neeravkaushal/RIDs-in-WCDs",
+	"content": "None"
+	},
+	"github/YangLab/RNAlight": {
+	"id": "github/YangLab/RNAlight",
+	"title": "github/YangLab/RNAlight",
+	"url": " https://rseng.github.io/software/repository/github/YangLab/RNAlight",
+	"content": "a machine learning model to identify nucleotide features determining RNA subcellular localization"
 	},
-	"github/martinsparre/XSHPipelineManager": {
-	"id": "github/martinsparre/XSHPipelineManager",
-	"title": "github/martinsparre/XSHPipelineManager",
-	"url": " https://rseng.github.io/software/repository/github/martinsparre/XSHPipelineManager",
-	"content": "A script to run the X-shooter pipeline"
+	"github/YangLab/CIRCexplorer2": {
+	"id": "github/YangLab/CIRCexplorer2",
+	"title": "github/YangLab/CIRCexplorer2",
+	"url": " https://rseng.github.io/software/repository/github/YangLab/CIRCexplorer2",
+	"content": "a comprehensive and integrative circular RNA analysis toolset."
 	},
-	"github/dipol-uf/DIPOL-UF": {
-	"id": "github/dipol-uf/DIPOL-UF",
-	"title": "github/dipol-uf/DIPOL-UF",
-	"url": " https://rseng.github.io/software/repository/github/dipol-uf/DIPOL-UF",
-	"content": "DIPOL-3"
+	"github/jobovy/gaia_tools": {
+	"id": "github/jobovy/gaia_tools",
+	"title": "github/jobovy/gaia_tools",
+	"url": " https://rseng.github.io/software/repository/github/jobovy/gaia_tools",
+	"content": "Tools for working with the @ESAGaia data and related data sets"
 	},
-	"github/davtsang/slimplectic": {
-	"id": "github/davtsang/slimplectic",
-	"title": "github/davtsang/slimplectic",
-	"url": " https://rseng.github.io/software/repository/github/davtsang/slimplectic",
-	"content": "Python code for generating and running &#34;slimplectic&#34; integrators (nonconservative variational integrators)"
+	"github/jobovy/apogee": {
+	"id": "github/jobovy/apogee",
+	"title": "github/jobovy/apogee",
+	"url": " https://rseng.github.io/software/repository/github/jobovy/apogee",
+	"content": "Tools for dealing with APOGEE data"
 	},
-	"github/BogdanCiambur/PROFILER": {
-	"id": "github/BogdanCiambur/PROFILER",
-	"title": "github/BogdanCiambur/PROFILER",
-	"url": " https://rseng.github.io/software/repository/github/BogdanCiambur/PROFILER",
-	"content": "This repository contains the code Profiler, a Python program for decomposing galaxy light profiles in 1D"
+	"github/jobovy/streamgap-pepper": {
+	"id": "github/jobovy/streamgap-pepper",
+	"title": "github/jobovy/streamgap-pepper",
+	"url": " https://rseng.github.io/software/repository/github/jobovy/streamgap-pepper",
+	"content": "Code exploring the effect of peppering of streams with many small impacts"
 	},
-	"github/VicidominiLab/BrightEyes-MCS": {
-	"id": "github/VicidominiLab/BrightEyes-MCS",
-	"title": "github/VicidominiLab/BrightEyes-MCS",
-	"url": " https://rseng.github.io/software/repository/github/VicidominiLab/BrightEyes-MCS",
-	"content": "BrightEyes Microscope Control Suite"
+	"github/jobovy/extreme-deconvolution": {
+	"id": "github/jobovy/extreme-deconvolution",
+	"title": "github/jobovy/extreme-deconvolution",
+	"url": " https://rseng.github.io/software/repository/github/jobovy/extreme-deconvolution",
+	"content": "Density estimation using Gaussian mixtures in the presence of noisy, heterogeneous and incomplete data"
 	},
-	"github/nialov/fractopo": {
-	"id": "github/nialov/fractopo",
-	"title": "github/nialov/fractopo",
-	"url": " https://rseng.github.io/software/repository/github/nialov/fractopo",
-	"content": "fractopo is a Python package with tools for validating and analyzing lineament and fracture trace maps"
+	"github/jobovy/simple-m2m": {
+	"id": "github/jobovy/simple-m2m",
+	"title": "github/jobovy/simple-m2m",
+	"url": " https://rseng.github.io/software/repository/github/jobovy/simple-m2m",
+	"content": "Simple M2M setup to explore some new ideas"
 	},
-	"github/jGetMove/jGetMove": {
-	"id": "github/jGetMove/jGetMove",
-	"title": "github/jGetMove/jGetMove",
-	"url": " https://rseng.github.io/software/repository/github/jGetMove/jGetMove",
-	"content": "GetMove algorithm in java"
+	"github/jobovy/galpy": {
+	"id": "github/jobovy/galpy",
+	"title": "github/jobovy/galpy",
+	"url": " https://rseng.github.io/software/repository/github/jobovy/galpy",
+	"content": "Galactic Dynamics in python"
 	},
-	"github/agurvich/FIRE_studio": {
-	"id": "github/agurvich/FIRE_studio",
-	"title": "github/agurvich/FIRE_studio",
-	"url": " https://rseng.github.io/software/repository/github/agurvich/FIRE_studio",
-	"content": "Movie Making Utilities for FIRE simulations"
+	"github/jobovy/stream-stream": {
+	"id": "github/jobovy/stream-stream",
+	"title": "github/jobovy/stream-stream",
+	"url": " https://rseng.github.io/software/repository/github/jobovy/stream-stream",
+	"content": "Investigation of the interaction between stellar and dark-matter streams"
 	},
-	"github/caracal-pipeline/caracal": {
-	"id": "github/caracal-pipeline/caracal",
-	"title": "github/caracal-pipeline/caracal",
-	"url": " https://rseng.github.io/software/repository/github/caracal-pipeline/caracal",
-	"content": "Containerized Automated Radio Astronomy Calibration (CARACal) pipeline "
+	"github/jobovy/segueSelect": {
+	"id": "github/jobovy/segueSelect",
+	"title": "github/jobovy/segueSelect",
+	"url": " https://rseng.github.io/software/repository/github/jobovy/segueSelect",
+	"content": "Selection function for the SDSS/SEGUE survey (G and K star samples)"
 	},
-	"github/caracal-pipeline/stimela": {
-	"id": "github/caracal-pipeline/stimela",
-	"title": "github/caracal-pipeline/stimela",
-	"url": " https://rseng.github.io/software/repository/github/caracal-pipeline/stimela",
-	"content": "Stimela 2.0"
+	"github/frarei312/ExceS-A-An-Exon-Centric-Split-Aligner": {
+	"id": "github/frarei312/ExceS-A-An-Exon-Centric-Split-Aligner",
+	"title": "github/frarei312/ExceS-A-An-Exon-Centric-Split-Aligner",
+	"url": " https://rseng.github.io/software/repository/github/frarei312/ExceS-A-An-Exon-Centric-Split-Aligner",
+	"content": "None"
 	},
-	"github/fmichel/TurtleKit": {
-	"id": "github/fmichel/TurtleKit",
-	"title": "github/fmichel/TurtleKit",
-	"url": " https://rseng.github.io/software/repository/github/fmichel/TurtleKit",
-	"content": "TurtleKit 3 - Multi-Agent Based Simulation Platform"
+	"github/C0PEP0D/otto": {
+	"id": "github/C0PEP0D/otto",
+	"title": "github/C0PEP0D/otto",
+	"url": " https://rseng.github.io/software/repository/github/C0PEP0D/otto",
+	"content": "a Python package to simulate, solve and visualize the source-tracking POMDP"
 	},
-	"github/fmichel/MaDKit": {
-	"id": "github/fmichel/MaDKit",
-	"title": "github/fmichel/MaDKit",
-	"url": " https://rseng.github.io/software/repository/github/fmichel/MaDKit",
-	"content": "MultiAgent Development Kit - version 5"
+	"github/zkdtc/MLC_ELGs": {
+	"id": "github/zkdtc/MLC_ELGs",
+	"title": "github/zkdtc/MLC_ELGs",
+	"url": " https://rseng.github.io/software/repository/github/zkdtc/MLC_ELGs",
+	"content": "Machine Learning Classifiers for intermediate redshift Emission Line Galaxies"
 	},
-	"github/wullm/fastdf": {
-	"id": "github/wullm/fastdf",
-	"title": "github/wullm/fastdf",
-	"url": " https://rseng.github.io/software/repository/github/wullm/fastdf",
-	"content": "Integrate neutrino geodesics in linear theory."
+	"github/rabix/cwl-format": {
+	"id": "github/rabix/cwl-format",
+	"title": "github/rabix/cwl-format",
+	"url": " https://rseng.github.io/software/repository/github/rabix/cwl-format",
+	"content": "A very opinionated code formatter for CWL"
 	},
-	"github/wullm/zwindstroom": {
-	"id": "github/wullm/zwindstroom",
-	"title": "github/wullm/zwindstroom",
-	"url": " https://rseng.github.io/software/repository/github/wullm/zwindstroom",
-	"content": "Library for cosmic neutrino calculations"
+	"github/KTH-Nek5000/UQit": {
+	"id": "github/KTH-Nek5000/UQit",
+	"title": "github/KTH-Nek5000/UQit",
+	"url": " https://rseng.github.io/software/repository/github/KTH-Nek5000/UQit",
+	"content": "None"
 	},
-	"github/linneas/condetri": {
-	"id": "github/linneas/condetri",
-	"title": "github/linneas/condetri",
-	"url": " https://rseng.github.io/software/repository/github/linneas/condetri",
-	"content": "Automatically exported from code.google.com/p/condetri"
+	"github/biocircuits/bioscrape": {
+	"id": "github/biocircuits/bioscrape",
+	"title": "github/biocircuits/bioscrape",
+	"url": " https://rseng.github.io/software/repository/github/biocircuits/bioscrape",
+	"content": "BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)"
 	},
-	"github/Martinsos/edlib": {
-	"id": "github/Martinsos/edlib",
-	"title": "github/Martinsos/edlib",
-	"url": " https://rseng.github.io/software/repository/github/Martinsos/edlib",
-	"content": "Lightweight, super fast C/C++ (&amp; Python) library for sequence alignment using edit (Levenshtein) distance."
+	"github/Starlink/starlink": {
+	"id": "github/Starlink/starlink",
+	"title": "github/Starlink/starlink",
+	"url": " https://rseng.github.io/software/repository/github/Starlink/starlink",
+	"content": "Starlink Software Collection"
 	},
-	"github/niceume/datasailr": {
-	"id": "github/niceume/datasailr",
-	"title": "github/niceume/datasailr",
-	"url": " https://rseng.github.io/software/repository/github/niceume/datasailr",
-	"content": "Base repository for DataSailr R package, which enables row by row data manipulation. To build and/or develop DataSailr R package, use datasailr_toolchain repository."
+	"github/Starlink/ORAC-DR": {
+	"id": "github/Starlink/ORAC-DR",
+	"title": "github/Starlink/ORAC-DR",
+	"url": " https://rseng.github.io/software/repository/github/Starlink/ORAC-DR",
+	"content": "The ORAC-DR astronomy data reduction pipeline"
 	},
-	"github/Pranab-JD/iPIC3D-CPU-SPACE-CoE": {
-	"id": "github/Pranab-JD/iPIC3D-CPU-SPACE-CoE",
-	"title": "github/Pranab-JD/iPIC3D-CPU-SPACE-CoE",
-	"url": " https://rseng.github.io/software/repository/github/Pranab-JD/iPIC3D-CPU-SPACE-CoE",
-	"content": "the CPU version of iPIC3D supporting MPI and OpenMP"
+	"github/Starlink/starjava": {
+	"id": "github/Starlink/starjava",
+	"title": "github/Starlink/starjava",
+	"url": " https://rseng.github.io/software/repository/github/Starlink/starjava",
+	"content": "Java applications initially developed for the Starlink Project but now developed independently"
 	},
-	"github/Pranab-JD/LeXInt": {
-	"id": "github/Pranab-JD/LeXInt",
-	"title": "github/Pranab-JD/LeXInt",
-	"url": " https://rseng.github.io/software/repository/github/Pranab-JD/LeXInt",
-	"content": "Leja Exponential Integrators"
+	"github/Starlink/hds-v5": {
+	"id": "github/Starlink/hds-v5",
+	"title": "github/Starlink/hds-v5",
+	"url": " https://rseng.github.io/software/repository/github/Starlink/hds-v5",
+	"content": "HDS API implemented using HDF5"
 	},
-	"github/sethspjohnso/satmc": {
-	"id": "github/sethspjohnso/satmc",
-	"title": "github/sethspjohnso/satmc",
-	"url": " https://rseng.github.io/software/repository/github/sethspjohnso/satmc",
-	"content": "Current versions of IDL and Python based SATMC"
+	"github/Starlink/palpy": {
+	"id": "github/Starlink/palpy",
+	"title": "github/Starlink/palpy",
+	"url": " https://rseng.github.io/software/repository/github/Starlink/palpy",
+	"content": "Python interface to the PAL positional astronomy library"
 	},
-	"github/damonge/schNell": {
-	"id": "github/damonge/schNell",
-	"title": "github/damonge/schNell",
-	"url": " https://rseng.github.io/software/repository/github/damonge/schNell",
-	"content": "Fast calculation of N_ell for GW anisotropies"
+	"github/Starlink/pal": {
+	"id": "github/Starlink/pal",
+	"title": "github/Starlink/pal",
+	"url": " https://rseng.github.io/software/repository/github/Starlink/pal",
+	"content": "Positional Astronomy Library"
 	},
-	"github/damonge/CUTE": {
-	"id": "github/damonge/CUTE",
-	"title": "github/damonge/CUTE",
-	"url": " https://rseng.github.io/software/repository/github/damonge/CUTE",
-	"content": "Correlation Utilities and Two-point Estimation"
+	"github/Starlink/aspic": {
+	"id": "github/Starlink/aspic",
+	"title": "github/Starlink/aspic",
+	"url": " https://rseng.github.io/software/repository/github/Starlink/aspic",
+	"content": "Starlink Image processing programs from the 1980s"
 	},
-	"github/damonge/CRIME": {
-	"id": "github/damonge/CRIME",
-	"title": "github/damonge/CRIME",
-	"url": " https://rseng.github.io/software/repository/github/damonge/CRIME",
-	"content": "Cosmological Realizations for Intensity Mapping Experiments"
+	"github/Starlink/perl-Starlink-Autoastrom": {
+	"id": "github/Starlink/perl-Starlink-Autoastrom",
+	"title": "github/Starlink/perl-Starlink-Autoastrom",
+	"url": " https://rseng.github.io/software/repository/github/Starlink/perl-Starlink-Autoastrom",
+	"content": "Starlink Auto astrometry software"
 	},
-	"github/damonge/CoLoRe": {
-	"id": "github/damonge/CoLoRe",
-	"title": "github/damonge/CoLoRe",
-	"url": " https://rseng.github.io/software/repository/github/damonge/CoLoRe",
-	"content": "CoLoRe - Cosmological Lofty Realizations"
+	"github/genouest/biomaj-daemon": {
+	"id": "github/genouest/biomaj-daemon",
+	"title": "github/genouest/biomaj-daemon",
+	"url": " https://rseng.github.io/software/repository/github/genouest/biomaj-daemon",
+	"content": "micro service to manage biomaj client requests and bank updates"
 	},
-	"github/ynop/audiomate": {
-	"id": "github/ynop/audiomate",
-	"title": "github/ynop/audiomate",
-	"url": " https://rseng.github.io/software/repository/github/ynop/audiomate",
-	"content": "Python library for handling audio datasets."
+	"github/genouest/biomaj-cli": {
+	"id": "github/genouest/biomaj-cli",
+	"title": "github/genouest/biomaj-cli",
+	"url": " https://rseng.github.io/software/repository/github/genouest/biomaj-cli",
+	"content": "CLI for BioMAJ"
 	},
-	"github/qcxms/QCxMS": {
-	"id": "github/qcxms/QCxMS",
-	"title": "github/qcxms/QCxMS",
-	"url": " https://rseng.github.io/software/repository/github/qcxms/QCxMS",
-	"content": "Quantum mechanic mass spectrometry calculation program"
+	"github/obreschkow/dftools": {
+	"id": "github/obreschkow/dftools",
+	"title": "github/obreschkow/dftools",
+	"url": " https://rseng.github.io/software/repository/github/obreschkow/dftools",
+	"content": "None"
 	},
-	"github/fogellab/multiWGCNA": {
-	"id": "github/fogellab/multiWGCNA",
-	"title": "github/fogellab/multiWGCNA",
-	"url": " https://rseng.github.io/software/repository/github/fogellab/multiWGCNA",
-	"content": "an R package for deep mining gene co-expression networks in multi-trait expression data"
+	"github/vortex-exoplanet/VIP": {
+	"id": "github/vortex-exoplanet/VIP",
+	"title": "github/vortex-exoplanet/VIP",
+	"url": " https://rseng.github.io/software/repository/github/vortex-exoplanet/VIP",
+	"content": "VIP is a python package/library for angular, reference star and spectral differential imaging for exoplanet/disk detection through high-contrast imaging."
 	},
-	"github/JuliaManifolds/Manopt.jl": {
-	"id": "github/JuliaManifolds/Manopt.jl",
-	"title": "github/JuliaManifolds/Manopt.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaManifolds/Manopt.jl",
-	"content": "Optimization on Manifolds in Julia"
+	"github/Yingjie4Science/SDGdetector": {
+	"id": "github/Yingjie4Science/SDGdetector",
+	"title": "github/Yingjie4Science/SDGdetector",
+	"url": " https://rseng.github.io/software/repository/github/Yingjie4Science/SDGdetector",
+	"content": "A novel R package that can identify and visualize 17 Sustainable Development Goals and associated 169 Targets in text"
 	},
-	"github/PyTomography/slicer_spect_recon": {
-	"id": "github/PyTomography/slicer_spect_recon",
-	"title": "github/PyTomography/slicer_spect_recon",
-	"url": " https://rseng.github.io/software/repository/github/PyTomography/slicer_spect_recon",
-	"content": "3d slicer extension for pytomography to enable easy reconstruction of SPECT images"
+	"github/relipmoc/skewer": {
+	"id": "github/relipmoc/skewer",
+	"title": "github/relipmoc/skewer",
+	"url": " https://rseng.github.io/software/repository/github/relipmoc/skewer",
+	"content": "implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming.  It is specially designed for processing next-generation sequencing (NGS) paired-end sequences."
 	},
-	"github/abaleato/CARDiAC": {
-	"id": "github/abaleato/CARDiAC",
-	"title": "github/abaleato/CARDiAC",
-	"url": " https://rseng.github.io/software/repository/github/abaleato/CARDiAC",
-	"content": "Code for Anisotropic Redshift Distributions in Angular Clustering"
+	"github/YonghuiDong/RawHummus": {
+	"id": "github/YonghuiDong/RawHummus",
+	"title": "github/YonghuiDong/RawHummus",
+	"url": " https://rseng.github.io/software/repository/github/YonghuiDong/RawHummus",
+	"content": "QC Check Tool for Metabolomics"
 	},
-	"github/lgrcia/prose": {
-	"id": "github/lgrcia/prose",
-	"title": "github/lgrcia/prose",
-	"url": " https://rseng.github.io/software/repository/github/lgrcia/prose",
-	"content": "A python framework to process FITS images. Built for Astronomy."
+	"github/pmkruyen/dearscholar": {
+	"id": "github/pmkruyen/dearscholar",
+	"title": "github/pmkruyen/dearscholar",
+	"url": " https://rseng.github.io/software/repository/github/pmkruyen/dearscholar",
+	"content": "DearScholar: An open-source smartphone app for longitudinal scientific qualitative and quantitative (self-report) diary, log and survey research"
 	},
-	"github/szpiech/selscan": {
-	"id": "github/szpiech/selscan",
-	"title": "github/szpiech/selscan",
-	"url": " https://rseng.github.io/software/repository/github/szpiech/selscan",
-	"content": "Haplotype based scans for selection"
+	"github/huiwenke/MineProt": {
+	"id": "github/huiwenke/MineProt",
+	"title": "github/huiwenke/MineProt",
+	"url": " https://rseng.github.io/software/repository/github/huiwenke/MineProt",
+	"content": "Modern application for custom protein curation"
 	},
-	"github/hz1010/FIPRESCI_data_analysis": {
-	"id": "github/hz1010/FIPRESCI_data_analysis",
-	"title": "github/hz1010/FIPRESCI_data_analysis",
-	"url": " https://rseng.github.io/software/repository/github/hz1010/FIPRESCI_data_analysis",
-	"content": "Code for FIPERSCI data"
+	"github/openvax/pyensembl": {
+	"id": "github/openvax/pyensembl",
+	"title": "github/openvax/pyensembl",
+	"url": " https://rseng.github.io/software/repository/github/openvax/pyensembl",
+	"content": "Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl "
 	},
-	"github/msm550/DMATIS": {
-	"id": "github/msm550/DMATIS",
-	"title": "github/msm550/DMATIS",
-	"url": " https://rseng.github.io/software/repository/github/msm550/DMATIS",
-	"content": "Dark Matter ATtenuation Importance Sampling"
+	"github/openvax/mhcflurry": {
+	"id": "github/openvax/mhcflurry",
+	"title": "github/openvax/mhcflurry",
+	"url": " https://rseng.github.io/software/repository/github/openvax/mhcflurry",
+	"content": "Peptide-MHC I binding affinity prediction"
 	},
-	"github/bartongroup/RoSA": {
-	"id": "github/bartongroup/RoSA",
-	"title": "github/bartongroup/RoSA",
-	"url": " https://rseng.github.io/software/repository/github/bartongroup/RoSA",
-	"content": "Antisense analysis scripts"
+	"github/MetaCell/scicrunch-antibody-registry": {
+	"id": "github/MetaCell/scicrunch-antibody-registry",
+	"title": "github/MetaCell/scicrunch-antibody-registry",
+	"url": " https://rseng.github.io/software/repository/github/MetaCell/scicrunch-antibody-registry",
+	"content": "A repo for the SciCrunch antibody registry portal "
 	},
-	"github/bartongroup/yanosim": {
-	"id": "github/bartongroup/yanosim",
-	"title": "github/bartongroup/yanosim",
-	"url": " https://rseng.github.io/software/repository/github/bartongroup/yanosim",
-	"content": "Nanopore DRS read simulator"
+	"github/keck-datareductionpipelines/MosfireDRP": {
+	"id": "github/keck-datareductionpipelines/MosfireDRP",
+	"title": "github/keck-datareductionpipelines/MosfireDRP",
+	"url": " https://rseng.github.io/software/repository/github/keck-datareductionpipelines/MosfireDRP",
+	"content": "None"
 	},
-	"github/dolfin-adjoint/pyadjoint": {
-	"id": "github/dolfin-adjoint/pyadjoint",
-	"title": "github/dolfin-adjoint/pyadjoint",
-	"url": " https://rseng.github.io/software/repository/github/dolfin-adjoint/pyadjoint",
-	"content": "The algorithmic differentation tool pyadjoint and add-ons."
+	"github/savila/halogen": {
+	"id": "github/savila/halogen",
+	"title": "github/savila/halogen",
+	"url": " https://rseng.github.io/software/repository/github/savila/halogen",
+	"content": "None"
 	},
-	"github/Higgins00/TESS-Localize": {
-	"id": "github/Higgins00/TESS-Localize",
-	"title": "github/Higgins00/TESS-Localize",
-	"url": " https://rseng.github.io/software/repository/github/Higgins00/TESS-Localize",
-	"content": "Code for localizing variable star signatures in TESS Photometry"
+	"github/AndreaCaldiroli/ATES-Code": {
+	"id": "github/AndreaCaldiroli/ATES-Code",
+	"title": "github/AndreaCaldiroli/ATES-Code",
+	"url": " https://rseng.github.io/software/repository/github/AndreaCaldiroli/ATES-Code",
+	"content": "The ATES hydrodynamics code computes the temperature, density, velocity and ionization fraction profiles of highly irradiated planetary atmospheres, along with the current, steady-state mass loss rate. ATES solves the one-dimensional Euler, mass and energy conservation equations in radial coordinates through a finite-volume scheme. The hydrodynamics module is paired with a photoionization equilibrium solver that includes cooling via bremsstrahlung, recombination and collisional excitation/ionization for the case of an atmosphere of primordial composition (i.e., pure atomic hydrogen-helium), while also accounting for advection of the different ion species."
 	},
-	"github/biosimulations/Biosimulations": {
-	"id": "github/biosimulations/Biosimulations",
-	"title": "github/biosimulations/Biosimulations",
-	"url": " https://rseng.github.io/software/repository/github/biosimulations/Biosimulations",
-	"content": "Platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results"
+	"github/alessiospuriomancini/cosmopower": {
+	"id": "github/alessiospuriomancini/cosmopower",
+	"title": "github/alessiospuriomancini/cosmopower",
+	"url": " https://rseng.github.io/software/repository/github/alessiospuriomancini/cosmopower",
+	"content": "Machine Learning - accelerated Bayesian inference"
 	},
-	"github/fgbuster/fgbuster": {
-	"id": "github/fgbuster/fgbuster",
-	"title": "github/fgbuster/fgbuster",
-	"url": " https://rseng.github.io/software/repository/github/fgbuster/fgbuster",
-	"content": "Parametric component separation for Cosmic Microwave Background observations"
+	"github/mggg/ecological-inference": {
+	"id": "github/mggg/ecological-inference",
+	"title": "github/mggg/ecological-inference",
+	"url": " https://rseng.github.io/software/repository/github/mggg/ecological-inference",
+	"content": "None"
 	},
-	"github/learningsimulator/learningsimulator": {
-	"id": "github/learningsimulator/learningsimulator",
-	"title": "github/learningsimulator/learningsimulator",
-	"url": " https://rseng.github.io/software/repository/github/learningsimulator/learningsimulator",
-	"content": "Learning Simulator: A simulation software for animal and human learning"
+	"github/tardis-sn/carsus": {
+	"id": "github/tardis-sn/carsus",
+	"title": "github/tardis-sn/carsus",
+	"url": " https://rseng.github.io/software/repository/github/tardis-sn/carsus",
+	"content": "Atomic Database for Astronomy"
 	},
-	"github/sapearson/HSS": {
-	"id": "github/sapearson/HSS",
-	"title": "github/sapearson/HSS",
-	"url": " https://rseng.github.io/software/repository/github/sapearson/HSS",
-	"content": "The Hough Stream Spotter (HSS)"
+	"github/tardis-sn/tardis": {
+	"id": "github/tardis-sn/tardis",
+	"title": "github/tardis-sn/tardis",
+	"url": " https://rseng.github.io/software/repository/github/tardis-sn/tardis",
+	"content": "TARDIS - Temperature And Radiative Diffusion In Supernovae"
 	},
-	"github/RainthunderWYL/LoRD": {
-	"id": "github/RainthunderWYL/LoRD",
-	"title": "github/RainthunderWYL/LoRD",
-	"url": " https://rseng.github.io/software/repository/github/RainthunderWYL/LoRD",
-	"content": "Locate Reconnection Distribution"
+	"github/yangao07/abPOA": {
+	"id": "github/yangao07/abPOA",
+	"title": "github/yangao07/abPOA",
+	"url": " https://rseng.github.io/software/repository/github/yangao07/abPOA",
+	"content": "abPOA: an SIMD-based C library for fast partial order alignment using adaptive band"
 	},
-	"github/JunTaoLuo/mctreesearch4j": {
-	"id": "github/JunTaoLuo/mctreesearch4j",
-	"title": "github/JunTaoLuo/mctreesearch4j",
-	"url": " https://rseng.github.io/software/repository/github/JunTaoLuo/mctreesearch4j",
-	"content": "None"
+	"github/yangao07/TideHunter": {
+	"id": "github/yangao07/TideHunter",
+	"title": "github/yangao07/TideHunter",
+	"url": " https://rseng.github.io/software/repository/github/yangao07/TideHunter",
+	"content": "TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain"
 	},
-	"github/AngusWright/LAMBDAR": {
-	"id": "github/AngusWright/LAMBDAR",
-	"title": "github/AngusWright/LAMBDAR",
-	"url": " https://rseng.github.io/software/repository/github/AngusWright/LAMBDAR",
-	"content": "LAMBDAR: Lambda Adaptive Multi-Band Deblending Algorithm in R"
+	"github/BGI-Qingdao/TGS-GapCloser": {
+	"id": "github/BGI-Qingdao/TGS-GapCloser",
+	"title": "github/BGI-Qingdao/TGS-GapCloser",
+	"url": " https://rseng.github.io/software/repository/github/BGI-Qingdao/TGS-GapCloser",
+	"content": "A gap-closing software tool that uses long reads to enhance genome assembly."
 	},
-	"github/materialsproject/pymatgen-analysis-defects": {
-	"id": "github/materialsproject/pymatgen-analysis-defects",
-	"title": "github/materialsproject/pymatgen-analysis-defects",
-	"url": " https://rseng.github.io/software/repository/github/materialsproject/pymatgen-analysis-defects",
-	"content": "Defect analysis modules for pymatgen"
+	"github/khowe/quick": {
+	"id": "github/khowe/quick",
+	"title": "github/khowe/quick",
+	"url": " https://rseng.github.io/software/repository/github/khowe/quick",
+	"content": "an efficient implementation of the Neighbor-Joining algorithm."
 	},
-	"github/li-shaochuan/SEDIM": {
-	"id": "github/li-shaochuan/SEDIM",
-	"title": "github/li-shaochuan/SEDIM",
-	"url": " https://rseng.github.io/software/repository/github/li-shaochuan/SEDIM",
+	"github/ngltr/sinaps": {
+	"id": "github/ngltr/sinaps",
+	"title": "github/ngltr/sinaps",
+	"url": " https://rseng.github.io/software/repository/github/ngltr/sinaps",
 	"content": "None"
 	},
-	"github/thejasvibr/bat_beamshapes": {
-	"id": "github/thejasvibr/bat_beamshapes",
-	"title": "github/thejasvibr/bat_beamshapes",
-	"url": " https://rseng.github.io/software/repository/github/thejasvibr/bat_beamshapes",
-	"content": "Directivity functions for various sound sources"
+	"github/datngu/Circall": {
+	"id": "github/datngu/Circall",
+	"title": "github/datngu/Circall",
+	"url": " https://rseng.github.io/software/repository/github/datngu/Circall",
+	"content": "Circall is a novel method to discover circular RNA from paired-end RNA sequencing data"
 	},
-	"github/darioizzo/dcgp": {
-	"id": "github/darioizzo/dcgp",
-	"title": "github/darioizzo/dcgp",
-	"url": " https://rseng.github.io/software/repository/github/darioizzo/dcgp",
-	"content": "Implementation of a differentiable CGP (Cartesian Genetic Programming)"
+	"github/weizhongli/cdhit": {
+	"id": "github/weizhongli/cdhit",
+	"title": "github/weizhongli/cdhit",
+	"url": " https://rseng.github.io/software/repository/github/weizhongli/cdhit",
+	"content": "clusters and compares protein or nucleotide sequences."
 	},
-	"github/cvbuchem/LavAtmos": {
-	"id": "github/cvbuchem/LavAtmos",
-	"title": "github/cvbuchem/LavAtmos",
-	"url": " https://rseng.github.io/software/repository/github/cvbuchem/LavAtmos",
-	"content": "This code performs gas-melt equilibrium calculations for a given temperature and melt composition."
+	"github/Jinsl-lab/SDImpute": {
+	"id": "github/Jinsl-lab/SDImpute",
+	"title": "github/Jinsl-lab/SDImpute",
+	"url": " https://rseng.github.io/software/repository/github/Jinsl-lab/SDImpute",
+	"content": "A R package."
 	},
-	"github/OceanParcels/plasticparcels": {
-	"id": "github/OceanParcels/plasticparcels",
-	"title": "github/OceanParcels/plasticparcels",
-	"url": " https://rseng.github.io/software/repository/github/OceanParcels/plasticparcels",
-	"content": "Repository for PlasticParcels tool"
+	"github/musevlt/muse-psfr": {
+	"id": "github/musevlt/muse-psfr",
+	"title": "github/musevlt/muse-psfr",
+	"url": " https://rseng.github.io/software/repository/github/musevlt/muse-psfr",
+	"content": "MUSE-PSFR - PSF reconstruction for MUSE WFM-AO"
 	},
-	"github/Yash-10/Periodogram-Comparison-Optimize-Planet-Detection": {
-	"id": "github/Yash-10/Periodogram-Comparison-Optimize-Planet-Detection",
-	"title": "github/Yash-10/Periodogram-Comparison-Optimize-Planet-Detection",
-	"url": " https://rseng.github.io/software/repository/github/Yash-10/Periodogram-Comparison-Optimize-Planet-Detection",
-	"content": "Extreme Value Theory for comparing periodograms: Optimizing future transiting exoplanet surveys"
+	"github/musevlt/origin": {
+	"id": "github/musevlt/origin",
+	"title": "github/musevlt/origin",
+	"url": " https://rseng.github.io/software/repository/github/musevlt/origin",
+	"content": "ORIGIN: detectiOn and extRactIon of Galaxy emIssion liNes"
 	},
-	"github/Yash-10/beta-sgp": {
-	"id": "github/Yash-10/beta-sgp",
-	"title": "github/Yash-10/beta-sgp",
-	"url": " https://rseng.github.io/software/repository/github/Yash-10/beta-sgp",
-	"content": "Scaled Gradient Projection (SGP) algorithm with beta divergence"
+	"github/max-little/GRAPL": {
+	"id": "github/max-little/GRAPL",
+	"title": "github/max-little/GRAPL",
+	"url": " https://rseng.github.io/software/repository/github/max-little/GRAPL",
+	"content": "GRAPL: A computational library for nonparametric structural causal modelling, analysis and inference"
 	},
-	"github/slzarate/parliament2": {
-	"id": "github/slzarate/parliament2",
-	"title": "github/slzarate/parliament2",
-	"url": " https://rseng.github.io/software/repository/github/slzarate/parliament2",
-	"content": "Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data"
+	"github/ylxu05/HN-PPISP": {
+	"id": "github/ylxu05/HN-PPISP",
+	"title": "github/ylxu05/HN-PPISP",
+	"url": " https://rseng.github.io/software/repository/github/ylxu05/HN-PPISP",
+	"content": "None"
 	},
-	"github/jeremiah-corrado/fem_2d": {
-	"id": "github/jeremiah-corrado/fem_2d",
-	"title": "github/jeremiah-corrado/fem_2d",
-	"url": " https://rseng.github.io/software/repository/github/jeremiah-corrado/fem_2d",
-	"content": "A rust library for 2D Finite Element Method computations"
+	"github/nand1155/CausNet": {
+	"id": "github/nand1155/CausNet",
+	"title": "github/nand1155/CausNet",
+	"url": " https://rseng.github.io/software/repository/github/nand1155/CausNet",
+	"content": "Generational orderings based search for optimal Bayesian networks via dynamic programming with parent set constraints"
 	},
-	"github/zjupgx/modig": {
-	"id": "github/zjupgx/modig",
-	"title": "github/zjupgx/modig",
-	"url": " https://rseng.github.io/software/repository/github/zjupgx/modig",
-	"content": "MODIG: Integrating Multi-Omics and Multi-Dimensional Gene Network for Cancer Driver Gene Identification based on Graph Attention Network Model"
+	"github/keurfonluu/toughio": {
+	"id": "github/keurfonluu/toughio",
+	"title": "github/keurfonluu/toughio",
+	"url": " https://rseng.github.io/software/repository/github/keurfonluu/toughio",
+	"content": "Pre- and post-processing Python library for TOUGH"
 	},
-	"github/kungfugo/BellDiagonalQudits.jl": {
-	"id": "github/kungfugo/BellDiagonalQudits.jl",
-	"title": "github/kungfugo/BellDiagonalQudits.jl",
-	"url": " https://rseng.github.io/software/repository/github/kungfugo/BellDiagonalQudits.jl",
+	"github/JesusTorrado/extrapops": {
+	"id": "github/JesusTorrado/extrapops",
+	"title": "github/JesusTorrado/extrapops",
+	"url": " https://rseng.github.io/software/repository/github/JesusTorrado/extrapops",
+	"content": "extrapops: fast simulation and analysis of extra-galactic binary GW sources"
+	},
+	"github/Fenyutanchan/solar-vSI": {
+	"id": "github/Fenyutanchan/solar-vSI",
+	"title": "github/Fenyutanchan/solar-vSI",
+	"url": " https://rseng.github.io/software/repository/github/Fenyutanchan/solar-vSI",
 	"content": "None"
 	},
-	"github/TrackerControl/tracker-control-android": {
-	"id": "github/TrackerControl/tracker-control-android",
-	"title": "github/TrackerControl/tracker-control-android",
-	"url": " https://rseng.github.io/software/repository/github/TrackerControl/tracker-control-android",
-	"content": "TrackerControl: monitor and control trackers and ads."
+	"github/nworbde/dStar": {
+	"id": "github/nworbde/dStar",
+	"title": "github/nworbde/dStar",
+	"url": " https://rseng.github.io/software/repository/github/nworbde/dStar",
+	"content": "routines for computing neutron star structure and evolution"
 	},
-	"github/MDAnalysis/mdanalysis": {
-	"id": "github/MDAnalysis/mdanalysis",
-	"title": "github/MDAnalysis/mdanalysis",
-	"url": " https://rseng.github.io/software/repository/github/MDAnalysis/mdanalysis",
-	"content": "MDAnalysis is a Python library to analyze molecular dynamics trajectories."
+	"github/ivastar/clear": {
+	"id": "github/ivastar/clear",
+	"title": "github/ivastar/clear",
+	"url": " https://rseng.github.io/software/repository/github/ivastar/clear",
+	"content": "Library for the CLEAR collaboration codebase."
 	},
-	"github/jonaselgammal/GPry": {
-	"id": "github/jonaselgammal/GPry",
-	"title": "github/jonaselgammal/GPry",
-	"url": " https://rseng.github.io/software/repository/github/jonaselgammal/GPry",
-	"content": "A Package for Bayesian inference of expensive likelihoods with Gaussian Processes"
+	"github/NRDD-constraints/NRDD": {
+	"id": "github/NRDD-constraints/NRDD",
+	"title": "github/NRDD-constraints/NRDD",
+	"url": " https://rseng.github.io/software/repository/github/NRDD-constraints/NRDD",
+	"content": "A python tool for calculating the exclusion plot for Dark Matter interaction with the Standard Model in non-relativistic Effective Theory Models. "
 	},
-	"github/rinikerlab/Ensembler": {
-	"id": "github/rinikerlab/Ensembler",
-	"title": "github/rinikerlab/Ensembler",
-	"url": " https://rseng.github.io/software/repository/github/rinikerlab/Ensembler",
-	"content": "None"
+	"github/fcs-analysis/PyScanFCS": {
+	"id": "github/fcs-analysis/PyScanFCS",
+	"title": "github/fcs-analysis/PyScanFCS",
+	"url": " https://rseng.github.io/software/repository/github/fcs-analysis/PyScanFCS",
+	"content": "data evaluation in perpendicular line scanning FCS"
 	},
-	"github/orcasgit/python-fitbit": {
-	"id": "github/orcasgit/python-fitbit",
-	"title": "github/orcasgit/python-fitbit",
-	"url": " https://rseng.github.io/software/repository/github/orcasgit/python-fitbit",
-	"content": "Fitbit API Python Client Implementation"
+	"github/fcs-analysis/PyCorrFit": {
+	"id": "github/fcs-analysis/PyCorrFit",
+	"title": "github/fcs-analysis/PyCorrFit",
+	"url": " https://rseng.github.io/software/repository/github/fcs-analysis/PyCorrFit",
+	"content": "data analysis and fitting software for fluorescence correlation spectroscopy (FCS)"
 	},
-	"github/sczesla/PyAstronomy": {
-	"id": "github/sczesla/PyAstronomy",
-	"title": "github/sczesla/PyAstronomy",
-	"url": " https://rseng.github.io/software/repository/github/sczesla/PyAstronomy",
-	"content": "A collection of astronomy-related routines in Python"
+	"github/LTeinturier/Cloud-Killer-": {
+	"id": "github/LTeinturier/Cloud-Killer-",
+	"title": "github/LTeinturier/Cloud-Killer-",
+	"url": " https://rseng.github.io/software/repository/github/LTeinturier/Cloud-Killer-",
+	"content": "Project cloud killer "
 	},
-	"github/clwainwright/CosmoTransitions": {
-	"id": "github/clwainwright/CosmoTransitions",
-	"title": "github/clwainwright/CosmoTransitions",
-	"url": " https://rseng.github.io/software/repository/github/clwainwright/CosmoTransitions",
-	"content": "A package for analyzing finite or zero-temperature cosmological phase transitions driven by single or multiple scalar fields."
+	"github/jonas-fuchs/varVAMP": {
+	"id": "github/jonas-fuchs/varVAMP",
+	"title": "github/jonas-fuchs/varVAMP",
+	"url": " https://rseng.github.io/software/repository/github/jonas-fuchs/varVAMP",
+	"content": "Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses."
 	},
-	"github/RealTimeGenomics/rtg-tools": {
-	"id": "github/RealTimeGenomics/rtg-tools",
-	"title": "github/RealTimeGenomics/rtg-tools",
-	"url": " https://rseng.github.io/software/repository/github/RealTimeGenomics/rtg-tools",
-	"content": "RTG Tools: Utilities for accurate VCF comparison and manipulation"
+	"github/migueldvb/cine": {
+	"id": "github/migueldvb/cine",
+	"title": "github/migueldvb/cine",
+	"url": " https://rseng.github.io/software/repository/github/migueldvb/cine",
+	"content": "Calculate infrared pumping rates by solar radiation"
 	},
-	"github/METHODS-Group/DRDMannTurb": {
-	"id": "github/METHODS-Group/DRDMannTurb",
-	"title": "github/METHODS-Group/DRDMannTurb",
-	"url": " https://rseng.github.io/software/repository/github/METHODS-Group/DRDMannTurb",
-	"content": "None"
+	"github/singularityhub/singularity-hpc": {
+	"id": "github/singularityhub/singularity-hpc",
+	"title": "github/singularityhub/singularity-hpc",
+	"url": " https://rseng.github.io/software/repository/github/singularityhub/singularity-hpc",
+	"content": "Local filesystem registry for containers (intended for HPC) using Lmod or Environement Modules. Works for users and admins."
 	},
-	"github/kieranatkins/silique-detector": {
-	"id": "github/kieranatkins/silique-detector",
-	"title": "github/kieranatkins/silique-detector",
-	"url": " https://rseng.github.io/software/repository/github/kieranatkins/silique-detector",
-	"content": "Model weights, inference code and phenotyping code associated with the paper &#34;Deep Learning Phenotyping of Arabidopsis Fruits with QTL Analysis Verification&#34; by Atkins et al."
+	"github/singularityhub/singularity-compose": {
+	"id": "github/singularityhub/singularity-compose",
+	"title": "github/singularityhub/singularity-compose",
+	"url": " https://rseng.github.io/software/repository/github/singularityhub/singularity-compose",
+	"content": "orchestration for singularity containers (under development)"
 	},
-	"github/kieranatkins/gimp-image-annotator": {
-	"id": "github/kieranatkins/gimp-image-annotator",
-	"title": "github/kieranatkins/gimp-image-annotator",
-	"url": " https://rseng.github.io/software/repository/github/kieranatkins/gimp-image-annotator",
-	"content": "A GIMP plug-in to allow for direct generation of semantic segementation masks for use in machine learning projects, using the power of the GIMP selection tools."
+	"github/singularityhub/sregistry": {
+	"id": "github/singularityhub/sregistry",
+	"title": "github/singularityhub/sregistry",
+	"url": " https://rseng.github.io/software/repository/github/singularityhub/sregistry",
+	"content": "server for storage and management of singularity images"
 	},
-	"github/deeptools/HiCExplorer": {
-	"id": "github/deeptools/HiCExplorer",
-	"title": "github/deeptools/HiCExplorer",
-	"url": " https://rseng.github.io/software/repository/github/deeptools/HiCExplorer",
-	"content": "HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data."
+	"github/gnudatalanguage/gdl": {
+	"id": "github/gnudatalanguage/gdl",
+	"title": "github/gnudatalanguage/gdl",
+	"url": " https://rseng.github.io/software/repository/github/gnudatalanguage/gdl",
+	"content": "GDL - GNU Data Language"
 	},
-	"github/deeptools/py2bit": {
-	"id": "github/deeptools/py2bit",
-	"title": "github/deeptools/py2bit",
-	"url": " https://rseng.github.io/software/repository/github/deeptools/py2bit",
-	"content": "A python library for accessing 2bit files"
+	"github/anchal-009/SAVED21cm": {
+	"id": "github/anchal-009/SAVED21cm",
+	"title": "github/anchal-009/SAVED21cm",
+	"url": " https://rseng.github.io/software/repository/github/anchal-009/SAVED21cm",
+	"content": "A toolbox for extracting the 21cm signal from the simulated mock observation for REACH."
 	},
-	"github/deeptools/deepTools": {
-	"id": "github/deeptools/deepTools",
-	"title": "github/deeptools/deepTools",
-	"url": " https://rseng.github.io/software/repository/github/deeptools/deepTools",
-	"content": "a suite of python tools particularly developed for the efficient analysis of high-throughput sequencing data, such as ChIP-seq, RNA-seq or MNase-seq.  deepTools contains useful modules to process the mapped reads data for multiple quality checks, creating normalized coverage files in standard bedGraph and bigWig file formats, that allow comparison between different files (for example, treatment and control). Finally, using such normalized and standardized files, …"
+	"github/alawryaguila/multi-view-AE": {
+	"id": "github/alawryaguila/multi-view-AE",
+	"title": "github/alawryaguila/multi-view-AE",
+	"url": " https://rseng.github.io/software/repository/github/alawryaguila/multi-view-AE",
+	"content": "None"
 	},
-	"github/deeptools/deeptools_intervals": {
-	"id": "github/deeptools/deeptools_intervals",
-	"title": "github/deeptools/deeptools_intervals",
-	"url": " https://rseng.github.io/software/repository/github/deeptools/deeptools_intervals",
-	"content": "A python library for constructing interval trees with associated exon/annotation information"
+	"github/vicruiser/3Dmapper": {
+	"id": "github/vicruiser/3Dmapper",
+	"title": "github/vicruiser/3Dmapper",
+	"url": " https://rseng.github.io/software/repository/github/vicruiser/3Dmapper",
+	"content": "Map genetic variants and protein positions to protein interfaces in 3D"
 	},
-	"github/michauhl/RBPBench": {
-	"id": "github/michauhl/RBPBench",
-	"title": "github/michauhl/RBPBench",
-	"url": " https://rseng.github.io/software/repository/github/michauhl/RBPBench",
-	"content": "Evaluate CLIP-seq and other genomic region data using a comprehensive collection of known RBP binding motifs"
+	"github/A-Davies/LensCNN": {
+	"id": "github/A-Davies/LensCNN",
+	"title": "github/A-Davies/LensCNN",
+	"url": " https://rseng.github.io/software/repository/github/A-Davies/LensCNN",
+	"content": "A Python built Convolutional Neural Network to classify simulated images as containing a gravitational lens or not."
 	},
 	"github/robertwissing/EOS": {
 	"id": "github/robertwissing/EOS",
@@ -15837,845 +15459,905 @@
 	"url": " https://rseng.github.io/software/repository/github/robertwissing/EOS",
 	"content": "None"
 	},
-	"github/pmeier/pystiche": {
-	"id": "github/pmeier/pystiche",
-	"title": "github/pmeier/pystiche",
-	"url": " https://rseng.github.io/software/repository/github/pmeier/pystiche",
-	"content": "Framework for Neural Style Transfer (NST) built upon PyTorch"
+	"github/ntcockroft/STarFish": {
+	"id": "github/ntcockroft/STarFish",
+	"title": "github/ntcockroft/STarFish",
+	"url": " https://rseng.github.io/software/repository/github/ntcockroft/STarFish",
+	"content": "Tool for predicting the protein targets of bioactive small molecules"
 	},
-	"github/odb9402/CNNPeaks": {
-	"id": "github/odb9402/CNNPeaks",
-	"title": "github/odb9402/CNNPeaks",
-	"url": " https://rseng.github.io/software/repository/github/odb9402/CNNPeaks",
-	"content": "The ChIP-Seq peak calling algorithm using convolution neural networks"
+	"github/Oftatkofta/cellocity": {
+	"id": "github/Oftatkofta/cellocity",
+	"title": "github/Oftatkofta/cellocity",
+	"url": " https://rseng.github.io/software/repository/github/Oftatkofta/cellocity",
+	"content": "Scientific software for analysis of confluent cell dynamics."
 	},
-	"github/ewels/MultiQC": {
-	"id": "github/ewels/MultiQC",
-	"title": "github/ewels/MultiQC",
-	"url": " https://rseng.github.io/software/repository/github/ewels/MultiQC",
-	"content": "Aggregate results from bioinformatics analyses across many samples into a single report."
+	"github/UgoLomoio/gtex_visualizer": {
+	"id": "github/UgoLomoio/gtex_visualizer",
+	"title": "github/UgoLomoio/gtex_visualizer",
+	"url": " https://rseng.github.io/software/repository/github/UgoLomoio/gtex_visualizer",
+	"content": "None"
 	},
-	"github/tnakazato/priism": {
-	"id": "github/tnakazato/priism",
-	"title": "github/tnakazato/priism",
-	"url": " https://rseng.github.io/software/repository/github/tnakazato/priism",
-	"content": "PRIISM: Python Module for Radio Interferometry Imaging with Sparse Modeling"
+	"github/akinremisa/rfsed": {
+	"id": "github/akinremisa/rfsed",
+	"title": "github/akinremisa/rfsed",
+	"url": " https://rseng.github.io/software/repository/github/akinremisa/rfsed",
+	"content": "Package for standard and sediment correction receiver functions analysis"
 	},
-	"github/BradhamLab/icat": {
-	"id": "github/BradhamLab/icat",
-	"title": "github/BradhamLab/icat",
-	"url": " https://rseng.github.io/software/repository/github/BradhamLab/icat",
-	"content": "Identifying Cell-states Across Treatments"
+	"github/cgarraffo/StelNet": {
+	"id": "github/cgarraffo/StelNet",
+	"title": "github/cgarraffo/StelNet",
+	"url": " https://rseng.github.io/software/repository/github/cgarraffo/StelNet",
+	"content": "None"
 	},
-	"github/NeuralEnsemble/elephant": {
-	"id": "github/NeuralEnsemble/elephant",
-	"title": "github/NeuralEnsemble/elephant",
-	"url": " https://rseng.github.io/software/repository/github/NeuralEnsemble/elephant",
-	"content": "Elephant is the Electrophysiology Analysis Toolkit"
+	"github/AndresRTejedor/Mold": {
+	"id": "github/AndresRTejedor/Mold",
+	"title": "github/AndresRTejedor/Mold",
+	"url": " https://rseng.github.io/software/repository/github/AndresRTejedor/Mold",
+	"content": "Lammps package including square-like well potential to implement Mold integration and Lattice mold techniques"
 	},
-	"github/NeuralEnsemble/PyNN": {
-	"id": "github/NeuralEnsemble/PyNN",
-	"title": "github/NeuralEnsemble/PyNN",
-	"url": " https://rseng.github.io/software/repository/github/NeuralEnsemble/PyNN",
-	"content": "A Python package for simulator-independent specification of neuronal network models."
+	"github/synchrofit/synchrofit": {
+	"id": "github/synchrofit/synchrofit",
+	"title": "github/synchrofit/synchrofit",
+	"url": " https://rseng.github.io/software/repository/github/synchrofit/synchrofit",
+	"content": "Code for modelling a radio spectrum using the JP, KP or CI models. "
 	},
-	"github/yuansliu/minirmd": {
-	"id": "github/yuansliu/minirmd",
-	"title": "github/yuansliu/minirmd",
-	"url": " https://rseng.github.io/software/repository/github/yuansliu/minirmd",
+	"github/sidmohite/nimbus-astro": {
+	"id": "github/sidmohite/nimbus-astro",
+	"title": "github/sidmohite/nimbus-astro",
+	"url": " https://rseng.github.io/software/repository/github/sidmohite/nimbus-astro",
+	"content": "A Bayesian inference framework to constrain kilonova models."
+	},
+	"github/dkoslicki/TAMPA": {
+	"id": "github/dkoslicki/TAMPA",
+	"title": "github/dkoslicki/TAMPA",
+	"url": " https://rseng.github.io/software/repository/github/dkoslicki/TAMPA",
+	"content": "A collection of tools to visualize CAMI profiling outputs"
+	},
+	"github/danielemichilli/SpS": {
+	"id": "github/danielemichilli/SpS",
+	"title": "github/danielemichilli/SpS",
+	"url": " https://rseng.github.io/software/repository/github/danielemichilli/SpS",
+	"content": "Single-pulse Searcher"
+	},
+	"github/danielemichilli/DM_phase": {
+	"id": "github/danielemichilli/DM_phase",
+	"title": "github/danielemichilli/DM_phase",
+	"url": " https://rseng.github.io/software/repository/github/danielemichilli/DM_phase",
+	"content": "Tool to calculate the best dispersion measure for a burst using phase information."
+	},
+	"github/devnums/pyheartlib": {
+	"id": "github/devnums/pyheartlib",
+	"title": "github/devnums/pyheartlib",
+	"url": " https://rseng.github.io/software/repository/github/devnums/pyheartlib",
+	"content": "A Python package for processing electrocardiogram signals ❤️"
+	},
+	"github/bbbbbbzhou/MDPET": {
+	"id": "github/bbbbbbzhou/MDPET",
+	"title": "github/bbbbbbzhou/MDPET",
+	"url": " https://rseng.github.io/software/repository/github/bbbbbbzhou/MDPET",
+	"content": "MDPET: A Unified Motion Correction and Denoising Adversarial Network for Low-dose Gated PET (IEEE Transactions on Medical Imaging, 2021)"
+	},
+	"github/jbytecode/JMcDM": {
+	"id": "github/jbytecode/JMcDM",
+	"title": "github/jbytecode/JMcDM",
+	"url": " https://rseng.github.io/software/repository/github/jbytecode/JMcDM",
+	"content": "A package for Multiple criteria decision-making techniques in Julia"
+	},
+	"github/jbytecode/LinRegOutliers": {
+	"id": "github/jbytecode/LinRegOutliers",
+	"title": "github/jbytecode/LinRegOutliers",
+	"url": " https://rseng.github.io/software/repository/github/jbytecode/LinRegOutliers",
+	"content": "Direct and robust methods for outlier detection in linear regression"
+	},
+	"github/pydemull/activAnalyzer": {
+	"id": "github/pydemull/activAnalyzer",
+	"title": "github/pydemull/activAnalyzer",
+	"url": " https://rseng.github.io/software/repository/github/pydemull/activAnalyzer",
 	"content": "None"
 	},
-	"github/chianti-atomic/ChiantiPy": {
-	"id": "github/chianti-atomic/ChiantiPy",
-	"title": "github/chianti-atomic/ChiantiPy",
-	"url": " https://rseng.github.io/software/repository/github/chianti-atomic/ChiantiPy",
-	"content": "ChiantiPy is a python package to calculate the radiative properties of astrophysical plasmas based on the CHIANTI atomic database"
+	"github/JDabringhausen/BiPoS1": {
+	"id": "github/JDabringhausen/BiPoS1",
+	"title": "github/JDabringhausen/BiPoS1",
+	"url": " https://rseng.github.io/software/repository/github/JDabringhausen/BiPoS1",
+	"content": "This is the first version of the Binary Population Synthesizer (BiPoS1)"
 	},
-	"github/JieZheng-ShanghaiTech/PiLSL": {
-	"id": "github/JieZheng-ShanghaiTech/PiLSL",
-	"title": "github/JieZheng-ShanghaiTech/PiLSL",
-	"url": " https://rseng.github.io/software/repository/github/JieZheng-ShanghaiTech/PiLSL",
-	"content": "PiLSL is a pairwise interaction learning-based graph neural network (GNN) model for prediction of synthetic lethality (SL) as anti-cancer drug targets. It learns the representation of pairwise interaction between two genes from a knowledge graph (KG)."
+	"github/khyox/recentrifuge": {
+	"id": "github/khyox/recentrifuge",
+	"title": "github/khyox/recentrifuge",
+	"url": " https://rseng.github.io/software/repository/github/khyox/recentrifuge",
+	"content": "Recentrifuge: robust comparative analysis and contamination removal for metagenomics"
 	},
-	"github/askap-craco/CELEBI": {
-	"id": "github/askap-craco/CELEBI",
-	"title": "github/askap-craco/CELEBI",
-	"url": " https://rseng.github.io/software/repository/github/askap-craco/CELEBI",
-	"content": "The CRAFT Effortless Localisation and Enhanced Burst Inspection Pipeline"
+	"github/sverhoeven/docker-cartodb": {
+	"id": "github/sverhoeven/docker-cartodb",
+	"title": "github/sverhoeven/docker-cartodb",
+	"url": " https://rseng.github.io/software/repository/github/sverhoeven/docker-cartodb",
+	"content": "Dockerized CartoDB"
 	},
-	"github/GregoryFaust/samblaster": {
-	"id": "github/GregoryFaust/samblaster",
-	"title": "github/GregoryFaust/samblaster",
-	"url": " https://rseng.github.io/software/repository/github/GregoryFaust/samblaster",
-	"content": "samblaster: a tool to mark duplicates and extract discordant and split reads from sam files."
+	"github/OSSOS/SurveySimulator": {
+	"id": "github/OSSOS/SurveySimulator",
+	"title": "github/OSSOS/SurveySimulator",
+	"url": " https://rseng.github.io/software/repository/github/OSSOS/SurveySimulator",
+	"content": "Simulate detecting TNOs, nearly as fun as really detecting TNOs."
 	},
-	"github/GregoryFaust/yaha": {
-	"id": "github/GregoryFaust/yaha",
-	"title": "github/GregoryFaust/yaha",
-	"url": " https://rseng.github.io/software/repository/github/GregoryFaust/yaha",
-	"content": "yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp to 32kb."
+	"github/zhangjunpeng411/SCOM": {
+	"id": "github/zhangjunpeng411/SCOM",
+	"title": "github/zhangjunpeng411/SCOM",
+	"url": " https://rseng.github.io/software/repository/github/zhangjunpeng411/SCOM",
+	"content": "Pan-cancer characterization of ncRNA synergistic competition"
 	},
-	"github/PeterBartram/TES": {
-	"id": "github/PeterBartram/TES",
-	"title": "github/PeterBartram/TES",
-	"url": " https://rseng.github.io/software/repository/github/PeterBartram/TES",
-	"content": "Terrestrial Exoplanet Simulator public repository"
+	"github/zhangjunpeng411/Scan": {
+	"id": "github/zhangjunpeng411/Scan",
+	"title": "github/zhangjunpeng411/Scan",
+	"url": " https://rseng.github.io/software/repository/github/zhangjunpeng411/Scan",
+	"content": "Scanning sample-specific miRNA regulation from bulk and single-cell RNA-sequencing data"
 	},
-	"github/jdiasn/lidarSuit": {
-	"id": "github/jdiasn/lidarSuit",
-	"title": "github/jdiasn/lidarSuit",
-	"url": " https://rseng.github.io/software/repository/github/jdiasn/lidarSuit",
-	"content": "Archived. Please check https://github.com/jdiasn/lidarwind"
+	"github/JanCBrammer/biopeaks": {
+	"id": "github/JanCBrammer/biopeaks",
+	"title": "github/JanCBrammer/biopeaks",
+	"url": " https://rseng.github.io/software/repository/github/JanCBrammer/biopeaks",
+	"content": "biopeaks: a graphical user interface for feature extraction from heart- and breathing biosignals"
 	},
-	"github/ebundhoo/TAGOPSIN": {
-	"id": "github/ebundhoo/TAGOPSIN",
-	"title": "github/ebundhoo/TAGOPSIN",
-	"url": " https://rseng.github.io/software/repository/github/ebundhoo/TAGOPSIN",
-	"content": "Data(base) integration using the data warehousing approach"
+	"github/nabeelre/BTSbot": {
+	"id": "github/nabeelre/BTSbot",
+	"title": "github/nabeelre/BTSbot",
+	"url": " https://rseng.github.io/software/repository/github/nabeelre/BTSbot",
+	"content": "Automated identification of supernovae with multi-modal deep learning"
 	},
-	"github/ArnaudCassan/microlensing": {
-	"id": "github/ArnaudCassan/microlensing",
-	"title": "github/ArnaudCassan/microlensing",
-	"url": " https://rseng.github.io/software/repository/github/ArnaudCassan/microlensing",
-	"content": "Gravitational microlensing"
+	"github/nabeelre/NIMBLE": {
+	"id": "github/nabeelre/NIMBLE",
+	"title": "github/nabeelre/NIMBLE",
+	"url": " https://rseng.github.io/software/repository/github/nabeelre/NIMBLE",
+	"content": "A spherical Jeans modeling tool to compute a system&#39;s cumulative mass distribution from (observationally biased) 6D phase space coordinates"
 	},
-	"github/FePhyFoFum/phyx": {
-	"id": "github/FePhyFoFum/phyx",
-	"title": "github/FePhyFoFum/phyx",
-	"url": " https://rseng.github.io/software/repository/github/FePhyFoFum/phyx",
-	"content": "phylogenetics tools for linux (and other mostly posix compliant) computers"
+	"github/danielemelini/ALMA3": {
+	"id": "github/danielemelini/ALMA3",
+	"title": "github/danielemelini/ALMA3",
+	"url": " https://rseng.github.io/software/repository/github/danielemelini/ALMA3",
+	"content": "the plAnetary Love nuMbers cAlculator"
 	},
-	"github/SCM-NV/pyZacros": {
-	"id": "github/SCM-NV/pyZacros",
-	"title": "github/SCM-NV/pyZacros",
-	"url": " https://rseng.github.io/software/repository/github/SCM-NV/pyZacros",
-	"content": "Python library to handle KMC codes."
+	"github/lofar-astron/RMextract": {
+	"id": "github/lofar-astron/RMextract",
+	"title": "github/lofar-astron/RMextract",
+	"url": " https://rseng.github.io/software/repository/github/lofar-astron/RMextract",
+	"content": "extract TEC, vTEC, Earthmagnetic field and Rotation Measures from GPS and WMM data for radio interferometry observations "
 	},
-	"github/SCM-NV/qmflows-namd": {
-	"id": "github/SCM-NV/qmflows-namd",
-	"title": "github/SCM-NV/qmflows-namd",
-	"url": " https://rseng.github.io/software/repository/github/SCM-NV/qmflows-namd",
-	"content": "Package containing several workflows to compute molecular properties for nanomaterials"
+	"github/lofar-astron/DP3": {
+	"id": "github/lofar-astron/DP3",
+	"title": "github/lofar-astron/DP3",
+	"url": " https://rseng.github.io/software/repository/github/lofar-astron/DP3",
+	"content": "DP3: streaming processing pipeline for radio interferometric data"
 	},
-	"github/SCM-NV/qmflows": {
-	"id": "github/SCM-NV/qmflows",
-	"title": "github/SCM-NV/qmflows",
-	"url": " https://rseng.github.io/software/repository/github/SCM-NV/qmflows",
-	"content": "This library tackles the construction and efficient execution of computational chemistry workflows"
+	"github/NuGrid/NuPyCEE": {
+	"id": "github/NuGrid/NuPyCEE",
+	"title": "github/NuGrid/NuPyCEE",
+	"url": " https://rseng.github.io/software/repository/github/NuGrid/NuPyCEE",
+	"content": "You can find the website of NuPyCEE at "
 	},
-	"github/daniel-muthukrishna/astrodash": {
-	"id": "github/daniel-muthukrishna/astrodash",
-	"title": "github/daniel-muthukrishna/astrodash",
-	"url": " https://rseng.github.io/software/repository/github/daniel-muthukrishna/astrodash",
-	"content": "Deep learning for the automated spectral classification of supernovae"
+	"github/CornellLabofOrnithology/auk": {
+	"id": "github/CornellLabofOrnithology/auk",
+	"title": "github/CornellLabofOrnithology/auk",
+	"url": " https://rseng.github.io/software/repository/github/CornellLabofOrnithology/auk",
+	"content": "Working with eBird data in R"
 	},
-	"github/nextstrain/nextclade": {
-	"id": "github/nextstrain/nextclade",
-	"title": "github/nextstrain/nextclade",
-	"url": " https://rseng.github.io/software/repository/github/nextstrain/nextclade",
-	"content": "Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement"
+	"github/dkirkby/gphist": {
+	"id": "github/dkirkby/gphist",
+	"title": "github/dkirkby/gphist",
+	"url": " https://rseng.github.io/software/repository/github/dkirkby/gphist",
+	"content": "Cosmological expansion history inference using Gaussian processes"
 	},
-	"github/nextstrain/auspice": {
-	"id": "github/nextstrain/auspice",
-	"title": "github/nextstrain/auspice",
-	"url": " https://rseng.github.io/software/repository/github/nextstrain/auspice",
-	"content": "Web app for visualizing pathogen evolution"
+	"github/kartheikiyer/dense_basis": {
+	"id": "github/kartheikiyer/dense_basis",
+	"title": "github/kartheikiyer/dense_basis",
+	"url": " https://rseng.github.io/software/repository/github/kartheikiyer/dense_basis",
+	"content": "Dense Basis SED fitting"
+	},
+	"github/opengeos/segment-geospatial": {
+	"id": "github/opengeos/segment-geospatial",
+	"title": "github/opengeos/segment-geospatial",
+	"url": " https://rseng.github.io/software/repository/github/opengeos/segment-geospatial",
+	"content": "A Python package for segmenting geospatial data with the Segment Anything Model (SAM)"
 	},
-	"github/nextstrain/augur": {
-	"id": "github/nextstrain/augur",
-	"title": "github/nextstrain/augur",
-	"url": " https://rseng.github.io/software/repository/github/nextstrain/augur",
-	"content": "Pipeline components for real-time phylodynamic analysis"
+	"github/opengeos/HyperCoast": {
+	"id": "github/opengeos/HyperCoast",
+	"title": "github/opengeos/HyperCoast",
+	"url": " https://rseng.github.io/software/repository/github/opengeos/HyperCoast",
+	"content": "A Python Package for Visualizing and Analyzing Hyperspectral Data in Coastal Environments"
 	},
-	"github/steven-murray/mrpy": {
-	"id": "github/steven-murray/mrpy",
-	"title": "github/steven-murray/mrpy",
-	"url": " https://rseng.github.io/software/repository/github/steven-murray/mrpy",
-	"content": "A Python package for calculations with the MRP parameterisation of the Halo Mass Function."
+	"github/clawpack/pyclaw": {
+	"id": "github/clawpack/pyclaw",
+	"title": "github/clawpack/pyclaw",
+	"url": " https://rseng.github.io/software/repository/github/clawpack/pyclaw",
+	"content": "PyClaw is a Python-based interface to the algorithms of Clawpack and SharpClaw.  It also contains the PetClaw package, which adds parallelism through PETSc."
 	},
-	"github/steven-murray/pydftools": {
-	"id": "github/steven-murray/pydftools",
-	"title": "github/steven-murray/pydftools",
-	"url": " https://rseng.github.io/software/repository/github/steven-murray/pydftools",
-	"content": "A pure-python port of the R dftools package"
+	"github/clawpack/clawpack": {
+	"id": "github/clawpack/clawpack",
+	"title": "github/clawpack/clawpack",
+	"url": " https://rseng.github.io/software/repository/github/clawpack/clawpack",
+	"content": "Package for solving hyperbolic systems of partial differential equations"
 	},
-	"github/steven-murray/powerbox": {
-	"id": "github/steven-murray/powerbox",
-	"title": "github/steven-murray/powerbox",
-	"url": " https://rseng.github.io/software/repository/github/steven-murray/powerbox",
-	"content": "A python package for making arbitrarily structured, arbitrary-dimension boxes"
+	"github/freqtrade/freqtrade": {
+	"id": "github/freqtrade/freqtrade",
+	"title": "github/freqtrade/freqtrade",
+	"url": " https://rseng.github.io/software/repository/github/freqtrade/freqtrade",
+	"content": "Free, open source crypto trading bot"
 	},
-	"github/standage/AEGeAn": {
-	"id": "github/standage/AEGeAn",
-	"title": "github/standage/AEGeAn",
-	"url": " https://rseng.github.io/software/repository/github/standage/AEGeAn",
-	"content": "Integrated toolkit for analysis and evaluation of annotated genomes"
+	"github/YinanZhao21/SOAP_GPU": {
+	"id": "github/YinanZhao21/SOAP_GPU",
+	"title": "github/YinanZhao21/SOAP_GPU",
+	"url": " https://rseng.github.io/software/repository/github/YinanZhao21/SOAP_GPU",
+	"content": "None"
 	},
-	"github/mattyowl/fitScalingRelation": {
-	"id": "github/mattyowl/fitScalingRelation",
-	"title": "github/mattyowl/fitScalingRelation",
-	"url": " https://rseng.github.io/software/repository/github/mattyowl/fitScalingRelation",
-	"content": "Code for fitting galaxy cluster scaling relations using MCMC"
+	"github/nipy/heudiconv": {
+	"id": "github/nipy/heudiconv",
+	"title": "github/nipy/heudiconv",
+	"url": " https://rseng.github.io/software/repository/github/nipy/heudiconv",
+	"content": "Flexible DICOM conversion into structured directory layouts"
 	},
-	"github/mattyowl/astLib": {
-	"id": "github/mattyowl/astLib",
-	"title": "github/mattyowl/astLib",
-	"url": " https://rseng.github.io/software/repository/github/mattyowl/astLib",
-	"content": "A set of python modules for producing simple plots, statistics, common calculations, coordinate conversions, and manipulating FITS images with World Coordinate System (WCS) information."
+	"github/al-mcintyre/mCaller": {
+	"id": "github/al-mcintyre/mCaller",
+	"title": "github/al-mcintyre/mCaller",
+	"url": " https://rseng.github.io/software/repository/github/al-mcintyre/mCaller",
+	"content": "A python program to call methylation (m6A in DNA) from nanopore signal data "
 	},
-	"github/parthenon-hpc-lab/parthenon": {
-	"id": "github/parthenon-hpc-lab/parthenon",
-	"title": "github/parthenon-hpc-lab/parthenon",
-	"url": " https://rseng.github.io/software/repository/github/parthenon-hpc-lab/parthenon",
-	"content": "Parthenon AMR infrastructure "
+	"github/sanjibs/bmcmc": {
+	"id": "github/sanjibs/bmcmc",
+	"title": "github/sanjibs/bmcmc",
+	"url": " https://rseng.github.io/software/repository/github/sanjibs/bmcmc",
+	"content": "MCMC package for Bayesian data analysis"
 	},
-	"github/haiyang1986/TVAR": {
-	"id": "github/haiyang1986/TVAR",
-	"title": "github/haiyang1986/TVAR",
-	"url": " https://rseng.github.io/software/repository/github/haiyang1986/TVAR",
-	"content": "a deep learning approach for assessing tissue-specific functional effects of non-coding variants"
+	"github/shadden/celmech": {
+	"id": "github/shadden/celmech",
+	"title": "github/shadden/celmech",
+	"url": " https://rseng.github.io/software/repository/github/shadden/celmech",
+	"content": "Sandbox for celestial mechanics calculations"
 	},
-	"github/pmelsted/pizzly": {
-	"id": "github/pmelsted/pizzly",
-	"title": "github/pmelsted/pizzly",
-	"url": " https://rseng.github.io/software/repository/github/pmelsted/pizzly",
-	"content": "Fast fusion detection using kallisto"
+	"github/Pizzuti92/MG-MAMPOSSt": {
+	"id": "github/Pizzuti92/MG-MAMPOSSt",
+	"title": "github/Pizzuti92/MG-MAMPOSSt",
+	"url": " https://rseng.github.io/software/repository/github/Pizzuti92/MG-MAMPOSSt",
+	"content": "MG-MAMPOSSt is a FORTRAN code that extended the MAMPOSSt algorithm of G. Mamon, A. Biviano and G. Boué, that performs Bayesian fits of models of mass and velocity anisotropy profiles to the distribution of tracers in projected phase space, to handle modified gravity models and constrain its parameters. The new version implements two distinct types of gravity modifications, namely general chameleon (including $f(\mathcal{R})$ models) and beyond Horndeski gravity (Vainshtein screening)."
 	},
-	"github/enveda/RPath": {
-	"id": "github/enveda/RPath",
-	"title": "github/enveda/RPath",
-	"url": " https://rseng.github.io/software/repository/github/enveda/RPath",
-	"content": "Source code and data for &#34;Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures for drug discovery&#34;"
+	"github/Open-Minds-Lab/MRdataset": {
+	"id": "github/Open-Minds-Lab/MRdataset",
+	"title": "github/Open-Minds-Lab/MRdataset",
+	"url": " https://rseng.github.io/software/repository/github/Open-Minds-Lab/MRdataset",
+	"content": "MRdataset : unified interface to various neuroimaging dataset formats"
 	},
-	"github/ckm3/Py-PDM": {
-	"id": "github/ckm3/Py-PDM",
-	"title": "github/ckm3/Py-PDM",
-	"url": " https://rseng.github.io/software/repository/github/ckm3/Py-PDM",
-	"content": "A Python wrapper of the Phase Dispersion Minimization (PDM), which is a C code written by Stellingwerf."
+	"github/FRED-2/OptiType": {
+	"id": "github/FRED-2/OptiType",
+	"title": "github/FRED-2/OptiType",
+	"url": " https://rseng.github.io/software/repository/github/FRED-2/OptiType",
+	"content": "Precision HLA typing from next-generation sequencing data"
 	},
-	"github/connectomicslab/connectomemapper3": {
-	"id": "github/connectomicslab/connectomemapper3",
-	"title": "github/connectomicslab/connectomemapper3",
-	"url": " https://rseng.github.io/software/repository/github/connectomicslab/connectomemapper3",
-	"content": "Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD data, and preprocessed EEG to multi-resolution brain parcellation with corresponding connection matrices."
+	"github/flintproject/Flint": {
+	"id": "github/flintproject/Flint",
+	"title": "github/flintproject/Flint",
+	"url": " https://rseng.github.io/software/repository/github/flintproject/Flint",
+	"content": "A simulator for biological and physiological models"
 	},
-	"github/nombac/optab": {
-	"id": "github/nombac/optab",
-	"title": "github/nombac/optab",
-	"url": " https://rseng.github.io/software/repository/github/nombac/optab",
-	"content": "Public Fortran90 code package for generating ideal-gas opacity tables"
+	"github/yangfangs/KPP": {
+	"id": "github/yangfangs/KPP",
+	"title": "github/yangfangs/KPP",
+	"url": " https://rseng.github.io/software/repository/github/yangfangs/KPP",
+	"content": "KPP (kmer phylogenetic profile) algorithm"
 	},
-	"github/latrop/DECA": {
-	"id": "github/latrop/DECA",
-	"title": "github/latrop/DECA",
-	"url": " https://rseng.github.io/software/repository/github/latrop/DECA",
-	"content": "A tool for decomposition of images of galaxies"
+	"github/yangfangs/test_GFICLEE": {
+	"id": "github/yangfangs/test_GFICLEE",
+	"title": "github/yangfangs/test_GFICLEE",
+	"url": " https://rseng.github.io/software/repository/github/yangfangs/test_GFICLEE",
+	"content": "test GFICLEE model"
 	},
-	"github/era-urban/wrfpy": {
-	"id": "github/era-urban/wrfpy",
-	"title": "github/era-urban/wrfpy",
-	"url": " https://rseng.github.io/software/repository/github/era-urban/wrfpy",
+	"github/sid-krish/Rhometa_Full_Genome": {
+	"id": "github/sid-krish/Rhometa_Full_Genome",
+	"title": "github/sid-krish/Rhometa_Full_Genome",
+	"url": " https://rseng.github.io/software/repository/github/sid-krish/Rhometa_Full_Genome",
 	"content": "None"
 	},
-	"github/xianggebenben/GraphSL": {
-	"id": "github/xianggebenben/GraphSL",
-	"title": "github/xianggebenben/GraphSL",
-	"url": " https://rseng.github.io/software/repository/github/xianggebenben/GraphSL",
-	"content": "Graph Source Localization Library"
+	"github/vmmunoza/nuHawkHunter": {
+	"id": "github/vmmunoza/nuHawkHunter",
+	"title": "github/vmmunoza/nuHawkHunter",
+	"url": " https://rseng.github.io/software/repository/github/vmmunoza/nuHawkHunter",
+	"content": "Repository with forecast of PBH neutrinos"
 	},
-	"github/wdpozzo/raynest": {
-	"id": "github/wdpozzo/raynest",
-	"title": "github/wdpozzo/raynest",
-	"url": " https://rseng.github.io/software/repository/github/wdpozzo/raynest",
-	"content": "Nested sampling algorithm parallelised through ray"
+	"github/DLTK/DLTK": {
+	"id": "github/DLTK/DLTK",
+	"title": "github/DLTK/DLTK",
+	"url": " https://rseng.github.io/software/repository/github/DLTK/DLTK",
+	"content": "Deep Learning Toolkit for Medical Image Analysis"
 	},
-	"github/TheJacksonLaboratory/SvAnn": {
-	"id": "github/TheJacksonLaboratory/SvAnn",
-	"title": "github/TheJacksonLaboratory/SvAnn",
-	"url": " https://rseng.github.io/software/repository/github/TheJacksonLaboratory/SvAnn",
-	"content": "Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing"
+	"github/vatlab/sos-notebook": {
+	"id": "github/vatlab/sos-notebook",
+	"title": "github/vatlab/sos-notebook",
+	"url": " https://rseng.github.io/software/repository/github/vatlab/sos-notebook",
+	"content": "Multi-language Jupyter Notebook"
 	},
-	"github/TheJacksonLaboratory/drug-synergy": {
-	"id": "github/TheJacksonLaboratory/drug-synergy",
-	"title": "github/TheJacksonLaboratory/drug-synergy",
-	"url": " https://rseng.github.io/software/repository/github/TheJacksonLaboratory/drug-synergy",
-	"content": "Drug synergy prediction tool"
+	"github/widdowquinn/pyani": {
+	"id": "github/widdowquinn/pyani",
+	"title": "github/widdowquinn/pyani",
+	"url": " https://rseng.github.io/software/repository/github/widdowquinn/pyani",
+	"content": "Application and Python module for average nucleotide identity analyses of microbes."
 	},
-	"github/MikeHeiber/Excimontec": {
-	"id": "github/MikeHeiber/Excimontec",
-	"title": "github/MikeHeiber/Excimontec",
-	"url": " https://rseng.github.io/software/repository/github/MikeHeiber/Excimontec",
-	"content": "Excimontec is an open-source KMC simulation software package for modeling the optoelectronic processes in organic semiconductor materials and devices, such as OPVs, OLEDs, and more. "
+	"github/einsteinpy/einsteinpy": {
+	"id": "github/einsteinpy/einsteinpy",
+	"title": "github/einsteinpy/einsteinpy",
+	"url": " https://rseng.github.io/software/repository/github/einsteinpy/einsteinpy",
+	"content": "Repository for the EinsteinPy core package :rocket:"
 	},
-	"github/bokunoBike/m6AGE": {
-	"id": "github/bokunoBike/m6AGE",
-	"title": "github/bokunoBike/m6AGE",
-	"url": " https://rseng.github.io/software/repository/github/bokunoBike/m6AGE",
-	"content": "A predictor for m6A sites."
+	"github/mrazomej/AutoEncoderToolkit.jl": {
+	"id": "github/mrazomej/AutoEncoderToolkit.jl",
+	"title": "github/mrazomej/AutoEncoderToolkit.jl",
+	"url": " https://rseng.github.io/software/repository/github/mrazomej/AutoEncoderToolkit.jl",
+	"content": "Julia package with several functions to train and analyze Autoencoder-based neural networks"
 	},
-	"github/markusbonse/applefy": {
-	"id": "github/markusbonse/applefy",
-	"title": "github/markusbonse/applefy",
-	"url": " https://rseng.github.io/software/repository/github/markusbonse/applefy",
-	"content": "A Python package for calculating detection limits for exoplanet high contrast imaging (HCI) datasets."
+	"github/astroCV/astroCV": {
+	"id": "github/astroCV/astroCV",
+	"title": "github/astroCV/astroCV",
+	"url": " https://rseng.github.io/software/repository/github/astroCV/astroCV",
+	"content": "Computer Vision library for Astronomy"
 	},
-	"github/Munroe-Meyer-Institute-VR-Laboratory/Biosensor-Framework": {
-	"id": "github/Munroe-Meyer-Institute-VR-Laboratory/Biosensor-Framework",
-	"title": "github/Munroe-Meyer-Institute-VR-Laboratory/Biosensor-Framework",
-	"url": " https://rseng.github.io/software/repository/github/Munroe-Meyer-Institute-VR-Laboratory/Biosensor-Framework",
-	"content": "C# library that handles the full process of gathering biometric data from a body-worn sensor, transforming it into handcrafted feature vectors, and delivering an inferencing result in thirty-five lines of code. "
+	"github/minkailin/stratsi": {
+	"id": "github/minkailin/stratsi",
+	"title": "github/minkailin/stratsi",
+	"url": " https://rseng.github.io/software/repository/github/minkailin/stratsi",
+	"content": "stratified streaming instability"
 	},
-	"github/GooglingTheCancerGenome/sv-gen": {
-	"id": "github/GooglingTheCancerGenome/sv-gen",
-	"title": "github/GooglingTheCancerGenome/sv-gen",
-	"url": " https://rseng.github.io/software/repository/github/GooglingTheCancerGenome/sv-gen",
-	"content": "Snakemake-based workflow for generating artificial genomes with structural variants"
+	"github/jbuisine/macop": {
+	"id": "github/jbuisine/macop",
+	"title": "github/jbuisine/macop",
+	"url": " https://rseng.github.io/software/repository/github/jbuisine/macop",
+	"content": "Minimalist And Customisable Optimisation python Package"
 	},
-	"github/GooglingTheCancerGenome/sv-channels": {
-	"id": "github/GooglingTheCancerGenome/sv-channels",
-	"title": "github/GooglingTheCancerGenome/sv-channels",
-	"url": " https://rseng.github.io/software/repository/github/GooglingTheCancerGenome/sv-channels",
-	"content": "Deep learning-based structural variant caller"
+	"github/vwesselkamp/ernie-extension": {
+	"id": "github/vwesselkamp/ernie-extension",
+	"title": "github/vwesselkamp/ernie-extension",
+	"url": " https://rseng.github.io/software/repository/github/vwesselkamp/ernie-extension",
+	"content": "Contains the source code of the extension ERNIE from the WPES 2021 paper &#34;In-Depth Technical and Legal Analysis of Tracking on Health Related Websites with ERNIE Extension&#34;"
 	},
-	"github/GooglingTheCancerGenome/sv-callers": {
-	"id": "github/GooglingTheCancerGenome/sv-callers",
-	"title": "github/GooglingTheCancerGenome/sv-callers",
-	"url": " https://rseng.github.io/software/repository/github/GooglingTheCancerGenome/sv-callers",
-	"content": "Snakemake-based workflow for detecting structural variants in WGS data"
+	"github/songweizhi/Binning_refiner": {
+	"id": "github/songweizhi/Binning_refiner",
+	"title": "github/songweizhi/Binning_refiner",
+	"url": " https://rseng.github.io/software/repository/github/songweizhi/Binning_refiner",
+	"content": "Improving genome bins through the combination of different binning programs "
 	},
-	"github/SMTG-Bham/ThermoParser": {
-	"id": "github/SMTG-Bham/ThermoParser",
-	"title": "github/SMTG-Bham/ThermoParser",
-	"url": " https://rseng.github.io/software/repository/github/SMTG-Bham/ThermoParser",
-	"content": "A tool for streamlining data analysis and visualisation for thermoelectrics and charge carrier transport in computational materials science."
+	"github/leonardlab/COMET": {
+	"id": "github/leonardlab/COMET",
+	"title": "github/leonardlab/COMET",
+	"url": " https://rseng.github.io/software/repository/github/leonardlab/COMET",
+	"content": "The COMET toolkit for composing customizable genetic programs in mammalian cells"
 	},
-	"github/SMTG-Bham/doped": {
-	"id": "github/SMTG-Bham/doped",
-	"title": "github/SMTG-Bham/doped",
-	"url": " https://rseng.github.io/software/repository/github/SMTG-Bham/doped",
-	"content": "doped is a Python software for the generation, pre-/post-processing and analysis of defect supercell calculations, implementing the defect simulation workflow in an efficient, reproducible, user-friendly yet powerful and fully-customisable manner."
+	"github/freelawproject/eyecite": {
+	"id": "github/freelawproject/eyecite",
+	"title": "github/freelawproject/eyecite",
+	"url": " https://rseng.github.io/software/repository/github/freelawproject/eyecite",
+	"content": "Find legal citations in any block of text"
 	},
-	"github/eliotayache/GAMMA": {
-	"id": "github/eliotayache/GAMMA",
-	"title": "github/eliotayache/GAMMA",
-	"url": " https://rseng.github.io/software/repository/github/eliotayache/GAMMA",
-	"content": "Relativistic hydro and local cooling on a moving mesh"
+	"github/davidpagnon/Sports2D": {
+	"id": "github/davidpagnon/Sports2D",
+	"title": "github/davidpagnon/Sports2D",
+	"url": " https://rseng.github.io/software/repository/github/davidpagnon/Sports2D",
+	"content": "Compute 2D human pose and angles from a video or a webcam. "
 	},
-	"github/cmzmasek/forester": {
-	"id": "github/cmzmasek/forester",
-	"title": "github/cmzmasek/forester",
-	"url": " https://rseng.github.io/software/repository/github/cmzmasek/forester",
-	"content": "forester is a collection of open source libraries of Java and Ruby software for phylogenomics and evolutionary biology research"
+	"github/Natsiopoulos/ARDL": {
+	"id": "github/Natsiopoulos/ARDL",
+	"title": "github/Natsiopoulos/ARDL",
+	"url": " https://rseng.github.io/software/repository/github/Natsiopoulos/ARDL",
+	"content": "ARDL, ECM and Bounds-Test for Cointegration"
 	},
-	"github/damienmarsic/Parent-map": {
-	"id": "github/damienmarsic/Parent-map",
-	"title": "github/damienmarsic/Parent-map",
-	"url": " https://rseng.github.io/software/repository/github/damienmarsic/Parent-map",
-	"content": "Analyze parental contributions to evolved or engineered protein or DNA sequences"
+	"github/katholt/Kleborate": {
+	"id": "github/katholt/Kleborate",
+	"title": "github/katholt/Kleborate",
+	"url": " https://rseng.github.io/software/repository/github/katholt/Kleborate",
+	"content": "tool to screen Klebsiella genome assemblies"
 	},
-	"github/msolpera/pyUPMASK": {
-	"id": "github/msolpera/pyUPMASK",
-	"title": "github/msolpera/pyUPMASK",
-	"url": " https://rseng.github.io/software/repository/github/msolpera/pyUPMASK",
-	"content": "Unsupervised clustering method for stellar clusters."
+	"github/katholt/srst2": {
+	"id": "github/katholt/srst2",
+	"title": "github/katholt/srst2",
+	"url": " https://rseng.github.io/software/repository/github/katholt/srst2",
+	"content": "Short Read Sequence Typing for Bacterial Pathogens"
 	},
-	"github/ilaudy/PIAO": {
-	"id": "github/ilaudy/PIAO",
-	"title": "github/ilaudy/PIAO",
-	"url": " https://rseng.github.io/software/repository/github/ilaudy/PIAO",
-	"content": "PIAO (漂) is efficient memory-controlled python code using the standard SO algorithm to identify halos."
+	"github/katholt/Kaptive": {
+	"id": "github/katholt/Kaptive",
+	"title": "github/katholt/Kaptive",
+	"url": " https://rseng.github.io/software/repository/github/katholt/Kaptive",
+	"content": "obtain information about K and O types for Klebsiella genome assemblies"
 	},
-	"github/fabiorigamonti/bang": {
-	"id": "github/fabiorigamonti/bang",
-	"title": "github/fabiorigamonti/bang",
-	"url": " https://rseng.github.io/software/repository/github/fabiorigamonti/bang",
-	"content": "GPU/CPU optimized software for morpho-kinematic galaxy parameter estimation."
+	"github/ynop/audiomate": {
+	"id": "github/ynop/audiomate",
+	"title": "github/ynop/audiomate",
+	"url": " https://rseng.github.io/software/repository/github/ynop/audiomate",
+	"content": "Python library for handling audio datasets."
 	},
-	"github/hotokezaka/HeatingRate": {
-	"id": "github/hotokezaka/HeatingRate",
-	"title": "github/hotokezaka/HeatingRate",
-	"url": " https://rseng.github.io/software/repository/github/hotokezaka/HeatingRate",
-	"content": "None"
+	"github/ScialdoneLab/MitoHEAR": {
+	"id": "github/ScialdoneLab/MitoHEAR",
+	"title": "github/ScialdoneLab/MitoHEAR",
+	"url": " https://rseng.github.io/software/repository/github/ScialdoneLab/MitoHEAR",
+	"content": "MitoHEAR (Mitochondrial HEteroplasmy AnalyzeR) is an R package that allows the estimation as well as downstream statistical analysis of the mtDNA heteroplasmy calculated from single-cell datasets."
 	},
-	"github/codemeleon/seqPanther": {
-	"id": "github/codemeleon/seqPanther",
-	"title": "github/codemeleon/seqPanther",
-	"url": " https://rseng.github.io/software/repository/github/codemeleon/seqPanther",
-	"content": "Variant Caller and Patcher"
+	"github/hera-team/librarian": {
+	"id": "github/hera-team/librarian",
+	"title": "github/hera-team/librarian",
+	"url": " https://rseng.github.io/software/repository/github/hera-team/librarian",
+	"content": "The HERA Librarian."
 	},
-	"github/nickk124/RCR": {
-	"id": "github/nickk124/RCR",
-	"title": "github/nickk124/RCR",
-	"url": " https://rseng.github.io/software/repository/github/nickk124/RCR",
-	"content": "Robust Chauvenet Rejection: RCR is advanced, but easy to use, outlier rejection."
+	"github/xCDAT/xcdat": {
+	"id": "github/xCDAT/xcdat",
+	"title": "github/xCDAT/xcdat",
+	"url": " https://rseng.github.io/software/repository/github/xCDAT/xcdat",
+	"content": "An extension of xarray for climate data analysis on structured grids."
 	},
-	"github/ToyotaCRDL/mahos": {
-	"id": "github/ToyotaCRDL/mahos",
-	"title": "github/ToyotaCRDL/mahos",
-	"url": " https://rseng.github.io/software/repository/github/ToyotaCRDL/mahos",
-	"content": "Measurement Automation Handling and Orchestration System"
+	"github/newcleo-dev-team/lbh15": {
+	"id": "github/newcleo-dev-team/lbh15",
+	"title": "github/newcleo-dev-team/lbh15",
+	"url": " https://rseng.github.io/software/repository/github/newcleo-dev-team/lbh15",
+	"content": "Compilation of thermo-physical properties for lead/bismuth-based liquid metals for fast reactor technology"
 	},
-	"github/user29A/JPFITS": {
-	"id": "github/user29A/JPFITS",
-	"title": "github/user29A/JPFITS",
-	"url": " https://rseng.github.io/software/repository/github/user29A/JPFITS",
-	"content": "FITS File interaction written in Visual Studio C# .Net, compatible across all .Net platforms. JPFITS is not based on any other implementations and is written from the ground-up, consistent with the FITS standard, designed to interact with FITS files as object-oriented structures. See the github Wiki link below for more info."
+	"github/prashjet/popkinmocks": {
+	"id": "github/prashjet/popkinmocks",
+	"title": "github/prashjet/popkinmocks",
+	"url": " https://rseng.github.io/software/repository/github/prashjet/popkinmocks",
+	"content": "Create mock IFU datacubes for stellar population and kinematic modelling."
 	},
-	"github/user29A/fastrometry": {
-	"id": "github/user29A/fastrometry",
-	"title": "github/user29A/fastrometry",
-	"url": " https://rseng.github.io/software/repository/github/user29A/fastrometry",
-	"content": "Fast Automatic World Coordinate Solution Solver. See the github Wiki link below for more info."
+	"github/semaphoreP/whereistheplanet": {
+	"id": "github/semaphoreP/whereistheplanet",
+	"title": "github/semaphoreP/whereistheplanet",
+	"url": " https://rseng.github.io/software/repository/github/semaphoreP/whereistheplanet",
+	"content": "Prediciting the position of exoplanets"
 	},
-	"github/user29A/CCDLAB": {
-	"id": "github/user29A/CCDLAB",
-	"title": "github/user29A/CCDLAB",
-	"url": " https://rseng.github.io/software/repository/github/user29A/CCDLAB",
-	"content": "FITS image interaction, world coordinate solving, point source extraction, photometry, etc.  See the github Wiki link below for more info. If you require CCDLAB for UVIT, please ensure you have the UVIT Calibration Database which you can find at the CCDLAB Wiki link below."
+	"github/seheonoh/baygaud": {
+	"id": "github/seheonoh/baygaud",
+	"title": "github/seheonoh/baygaud",
+	"url": " https://rseng.github.io/software/repository/github/seheonoh/baygaud",
+	"content": "None"
 	},
-	"github/daeken/Emokit": {
-	"id": "github/daeken/Emokit",
-	"title": "github/daeken/Emokit",
-	"url": " https://rseng.github.io/software/repository/github/daeken/Emokit",
-	"content": "Python library for the Emotiv EPOC headset"
+	"github/seheonoh/2dbat": {
+	"id": "github/seheonoh/2dbat",
+	"title": "github/seheonoh/2dbat",
+	"url": " https://rseng.github.io/software/repository/github/seheonoh/2dbat",
+	"content": "2dbat v1.0"
 	},
-	"github/gem-pasteur/macsyfinder": {
-	"id": "github/gem-pasteur/macsyfinder",
-	"title": "github/gem-pasteur/macsyfinder",
-	"url": " https://rseng.github.io/software/repository/github/gem-pasteur/macsyfinder",
-	"content": "MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search."
+	"github/JoschaJ/mockFRBhosts": {
+	"id": "github/JoschaJ/mockFRBhosts",
+	"title": "github/JoschaJ/mockFRBhosts",
+	"url": " https://rseng.github.io/software/repository/github/JoschaJ/mockFRBhosts",
+	"content": "None"
 	},
-	"github/gem-pasteur/Integron_Finder": {
-	"id": "github/gem-pasteur/Integron_Finder",
-	"title": "github/gem-pasteur/Integron_Finder",
-	"url": " https://rseng.github.io/software/repository/github/gem-pasteur/Integron_Finder",
-	"content": "Bioinformatics tool to find integrons in bacterial genomes"
+	"github/ialopezt/GalLenspy": {
+	"id": "github/ialopezt/GalLenspy",
+	"title": "github/ialopezt/GalLenspy",
+	"url": " https://rseng.github.io/software/repository/github/ialopezt/GalLenspy",
+	"content": "This is a open code whose purpose is the reconstruction of mass profile in disc-like galaxies from the gravitational lensing effect."
 	},
-	"github/segasai/q3c": {
-	"id": "github/segasai/q3c",
-	"title": "github/segasai/q3c",
-	"url": " https://rseng.github.io/software/repository/github/segasai/q3c",
-	"content": "PostgreSQL extension for spatial indexing on a sphere"
+	"github/lehtiolab/msstitch": {
+	"id": "github/lehtiolab/msstitch",
+	"title": "github/lehtiolab/msstitch",
+	"url": " https://rseng.github.io/software/repository/github/lehtiolab/msstitch",
+	"content": "MS proteomics post-processing utilities"
 	},
-	"github/segasai/rvspecfit": {
-	"id": "github/segasai/rvspecfit",
-	"title": "github/segasai/rvspecfit",
-	"url": " https://rseng.github.io/software/repository/github/segasai/rvspecfit",
-	"content": "Radial velocity and stellar parameter fitting code for large surveys"
+	"github/AgentM-GEG/residual_feature_extraction": {
+	"id": "github/AgentM-GEG/residual_feature_extraction",
+	"title": "github/AgentM-GEG/residual_feature_extraction",
+	"url": " https://rseng.github.io/software/repository/github/AgentM-GEG/residual_feature_extraction",
+	"content": "A pipeline that carries out feature extraction of residual substructure within the residual images produced by popular galaxy structural-fitting routines such as GALFIT, GIM2D, etc. This pipeline works on model-subtracted residual images by popular structural fitting routines (e.g., GALFIT, GIM2D, etc) to extract faint low surface brightness features by isolating flux-wise and area-wise significant contiguous pixels regions by rigourous masking routine. This routine accepts the image cubes (original image, model image, residual image) and generates several data products"
 	},
-	"github/MAnalytics/opitools": {
-	"id": "github/MAnalytics/opitools",
-	"title": "github/MAnalytics/opitools",
-	"url": " https://rseng.github.io/software/repository/github/MAnalytics/opitools",
-	"content": "An R-package for opinion analysis of social media data"
+	"github/biofold/PhD-SNPg": {
+	"id": "github/biofold/PhD-SNPg",
+	"title": "github/biofold/PhD-SNPg",
+	"url": " https://rseng.github.io/software/repository/github/biofold/PhD-SNPg",
+	"content": "None"
 	},
-	"github/MAnalytics/akmedoids": {
-	"id": "github/MAnalytics/akmedoids",
-	"title": "github/MAnalytics/akmedoids",
-	"url": " https://rseng.github.io/software/repository/github/MAnalytics/akmedoids",
-	"content": "akmedoids for longitudinal clustering"
+	"github/biofold/ddgun": {
+	"id": "github/biofold/ddgun",
+	"title": "github/biofold/ddgun",
+	"url": " https://rseng.github.io/software/repository/github/biofold/ddgun",
+	"content": "predict stability change upon mutation"
 	},
-	"github/fhtouma/subgen2": {
-	"id": "github/fhtouma/subgen2",
-	"title": "github/fhtouma/subgen2",
-	"url": " https://rseng.github.io/software/repository/github/fhtouma/subgen2",
-	"content": "None"
+	"github/NGSolve/ngsPETSc": {
+	"id": "github/NGSolve/ngsPETSc",
+	"title": "github/NGSolve/ngsPETSc",
+	"url": " https://rseng.github.io/software/repository/github/NGSolve/ngsPETSc",
+	"content": "ngsPETSc Docs"
 	},
-	"github/grzeimann/Diagnose": {
-	"id": "github/grzeimann/Diagnose",
-	"title": "github/grzeimann/Diagnose",
-	"url": " https://rseng.github.io/software/repository/github/grzeimann/Diagnose",
+	"github/tingyuansen/The_Payne": {
+	"id": "github/tingyuansen/The_Payne",
+	"title": "github/tingyuansen/The_Payne",
+	"url": " https://rseng.github.io/software/repository/github/tingyuansen/The_Payne",
 	"content": "None"
 	},
-	"github/lrnv/cort": {
-	"id": "github/lrnv/cort",
-	"title": "github/lrnv/cort",
-	"url": " https://rseng.github.io/software/repository/github/lrnv/cort",
-	"content": "Classes and Tools For Some Empirical and Non-parametrical Copula Models."
+	"github/lydialucchesi/Vizumap": {
+	"id": "github/lydialucchesi/Vizumap",
+	"title": "github/lydialucchesi/Vizumap",
+	"url": " https://rseng.github.io/software/repository/github/lydialucchesi/Vizumap",
+	"content": "R package for visualizing uncertainty in spatial data"
+	},
+	"github/mattyowl/astLib": {
+	"id": "github/mattyowl/astLib",
+	"title": "github/mattyowl/astLib",
+	"url": " https://rseng.github.io/software/repository/github/mattyowl/astLib",
+	"content": "A set of python modules for producing simple plots, statistics, common calculations, coordinate conversions, and manipulating FITS images with World Coordinate System (WCS) information."
 	},
-	"github/lrnv/Copulas.jl": {
-	"id": "github/lrnv/Copulas.jl",
-	"title": "github/lrnv/Copulas.jl",
-	"url": " https://rseng.github.io/software/repository/github/lrnv/Copulas.jl",
-	"content": "A fully `Distributions.jl`-compliant copula package"
+	"github/mattyowl/fitScalingRelation": {
+	"id": "github/mattyowl/fitScalingRelation",
+	"title": "github/mattyowl/fitScalingRelation",
+	"url": " https://rseng.github.io/software/repository/github/mattyowl/fitScalingRelation",
+	"content": "Code for fitting galaxy cluster scaling relations using MCMC"
 	},
-	"github/OpenBioLink/Explorer": {
-	"id": "github/OpenBioLink/Explorer",
-	"title": "github/OpenBioLink/Explorer",
-	"url": " https://rseng.github.io/software/repository/github/OpenBioLink/Explorer",
+	"github/bengeof/QPoweredCompound2DeNovoDrugPropMax": {
+	"id": "github/bengeof/QPoweredCompound2DeNovoDrugPropMax",
+	"title": "github/bengeof/QPoweredCompound2DeNovoDrugPropMax",
+	"url": " https://rseng.github.io/software/repository/github/bengeof/QPoweredCompound2DeNovoDrugPropMax",
 	"content": "None"
 	},
-	"github/arvados/arvados": {
-	"id": "github/arvados/arvados",
-	"title": "github/arvados/arvados",
-	"url": " https://rseng.github.io/software/repository/github/arvados/arvados",
-	"content": "An open source platform for managing and analyzing biomedical big data"
+	"github/jodyphelan/tb-ml": {
+	"id": "github/jodyphelan/tb-ml",
+	"title": "github/jodyphelan/tb-ml",
+	"url": " https://rseng.github.io/software/repository/github/jodyphelan/tb-ml",
+	"content": "A simple tool for creating machine learning antimicrobial resistance prediction pipelines using Docker containers for M. tuberculosis"
 	},
-	"github/C-Briddon/SELCIE": {
-	"id": "github/C-Briddon/SELCIE",
-	"title": "github/C-Briddon/SELCIE",
-	"url": " https://rseng.github.io/software/repository/github/C-Briddon/SELCIE",
-	"content": "None"
+	"github/jodyphelan/TBProfiler": {
+	"id": "github/jodyphelan/TBProfiler",
+	"title": "github/jodyphelan/TBProfiler",
+	"url": " https://rseng.github.io/software/repository/github/jodyphelan/TBProfiler",
+	"content": "Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data"
 	},
-	"github/cwru-pat/cmb-multipole_vectors": {
-	"id": "github/cwru-pat/cmb-multipole_vectors",
-	"title": "github/cwru-pat/cmb-multipole_vectors",
-	"url": " https://rseng.github.io/software/repository/github/cwru-pat/cmb-multipole_vectors",
-	"content": "Multipole Vector formalism"
+	"github/GabrieleParimbelli/COLIBRI": {
+	"id": "github/GabrieleParimbelli/COLIBRI",
+	"title": "github/GabrieleParimbelli/COLIBRI",
+	"url": " https://rseng.github.io/software/repository/github/GabrieleParimbelli/COLIBRI",
+	"content": "Cosmology libraries in Python"
 	},
-	"github/cwru-pat/cosmograph": {
-	"id": "github/cwru-pat/cosmograph",
-	"title": "github/cwru-pat/cosmograph",
-	"url": " https://rseng.github.io/software/repository/github/cwru-pat/cosmograph",
-	"content": "COSMOlogical General Relativity And (Perfect fluid | Particle) Hydrodynamics"
+	"github/abs2k12/COCOA": {
+	"id": "github/abs2k12/COCOA",
+	"title": "github/abs2k12/COCOA",
+	"url": " https://rseng.github.io/software/repository/github/abs2k12/COCOA",
+	"content": "COCOA Code for Simulating Observations of Star Cluster Simulations"
 	},
-	"github/masoncarney/stepped_luneburg": {
-	"id": "github/masoncarney/stepped_luneburg",
-	"title": "github/masoncarney/stepped_luneburg",
-	"url": " https://rseng.github.io/software/repository/github/masoncarney/stepped_luneburg",
-	"content": "Modeling of a stepped Luneburg lens for all-sky surveys"
+	"github/AnantharamanLab/vRhyme": {
+	"id": "github/AnantharamanLab/vRhyme",
+	"title": "github/AnantharamanLab/vRhyme",
+	"url": " https://rseng.github.io/software/repository/github/AnantharamanLab/vRhyme",
+	"content": "Binning Virus Genomes from Metagenomes"
 	},
-	"github/jorittmo/singcar": {
-	"id": "github/jorittmo/singcar",
-	"title": "github/jorittmo/singcar",
-	"url": " https://rseng.github.io/software/repository/github/jorittmo/singcar",
-	"content": "singcar: A package for analysing case comparisons to normative controls"
+	"github/carronj/LensIt": {
+	"id": "github/carronj/LensIt",
+	"title": "github/carronj/LensIt",
+	"url": " https://rseng.github.io/software/repository/github/carronj/LensIt",
+	"content": "None"
 	},
-	"github/matteolucchini1/BHJet": {
-	"id": "github/matteolucchini1/BHJet",
-	"title": "github/matteolucchini1/BHJet",
-	"url": " https://rseng.github.io/software/repository/github/matteolucchini1/BHJet",
-	"content": "Semi analytical black hole jet model, jetset group, Amsterdam"
+	"github/carronj/plancklens": {
+	"id": "github/carronj/plancklens",
+	"title": "github/carronj/plancklens",
+	"url": " https://rseng.github.io/software/repository/github/carronj/plancklens",
+	"content": "Planck 2018 lensing pipeline"
 	},
-	"github/icesat2py/icepyx": {
-	"id": "github/icesat2py/icepyx",
-	"title": "github/icesat2py/icepyx",
-	"url": " https://rseng.github.io/software/repository/github/icesat2py/icepyx",
-	"content": "Python tools for obtaining and working with ICESat-2 data"
+	"github/carronj/lenspyx": {
+	"id": "github/carronj/lenspyx",
+	"title": "github/carronj/lenspyx",
+	"url": " https://rseng.github.io/software/repository/github/carronj/lenspyx",
+	"content": "Curved-sky python lensed CMB maps simulation package"
 	},
-	"github/dputhier/pygtftk": {
-	"id": "github/dputhier/pygtftk",
-	"title": "github/dputhier/pygtftk",
-	"url": " https://rseng.github.io/software/repository/github/dputhier/pygtftk",
-	"content": "A python package and a set of shell commands to handle GTF files"
+	"github/hsocasnavarro/NICOLE": {
+	"id": "github/hsocasnavarro/NICOLE",
+	"title": "github/hsocasnavarro/NICOLE",
+	"url": " https://rseng.github.io/software/repository/github/hsocasnavarro/NICOLE",
+	"content": "NLTE Stokes Synthesis/Inversion Code"
 	},
-	"github/jmd-dk/concept": {
-	"id": "github/jmd-dk/concept",
-	"title": "github/jmd-dk/concept",
-	"url": " https://rseng.github.io/software/repository/github/jmd-dk/concept",
-	"content": "COsmological N-body CodE in PyThon"
+	"github/james-m-osborn/astrosat": {
+	"id": "github/james-m-osborn/astrosat",
+	"title": "github/james-m-osborn/astrosat",
+	"url": " https://rseng.github.io/software/repository/github/james-m-osborn/astrosat",
+	"content": "None"
 	},
-	"github/soraxas/sbp-env": {
-	"id": "github/soraxas/sbp-env",
-	"title": "github/soraxas/sbp-env",
-	"url": " https://rseng.github.io/software/repository/github/soraxas/sbp-env",
-	"content": "Motion planning environment for Sampling-based Planners"
+	"github/BlackHolePerturbationToolkit/KerrGeoPy": {
+	"id": "github/BlackHolePerturbationToolkit/KerrGeoPy",
+	"title": "github/BlackHolePerturbationToolkit/KerrGeoPy",
+	"url": " https://rseng.github.io/software/repository/github/BlackHolePerturbationToolkit/KerrGeoPy",
+	"content": "Python library for computing properties of stable and plunging orbits around a spinning black hole"
 	},
-	"github/IlianPihlajamaa/ModeCouplingTheory.jl": {
-	"id": "github/IlianPihlajamaa/ModeCouplingTheory.jl",
-	"title": "github/IlianPihlajamaa/ModeCouplingTheory.jl",
-	"url": " https://rseng.github.io/software/repository/github/IlianPihlajamaa/ModeCouplingTheory.jl",
-	"content": "A generic and fast solver of mode-coupling theory-like integrodifferential equations"
+	"github/arup-group/pam": {
+	"id": "github/arup-group/pam",
+	"title": "github/arup-group/pam",
+	"url": " https://rseng.github.io/software/repository/github/arup-group/pam",
+	"content": "Generate and modify transport demand scenarios via a Python API."
 	},
-	"github/amerand/PMOIRED": {
-	"id": "github/amerand/PMOIRED",
-	"title": "github/amerand/PMOIRED",
-	"url": " https://rseng.github.io/software/repository/github/amerand/PMOIRED",
-	"content": "Display and fit Optical (spectro-)Interferometric OIFITS data "
+	"github/ewels/MultiQC": {
+	"id": "github/ewels/MultiQC",
+	"title": "github/ewels/MultiQC",
+	"url": " https://rseng.github.io/software/repository/github/ewels/MultiQC",
+	"content": "Aggregate results from bioinformatics analyses across many samples into a single report."
 	},
-	"github/amerand/CANDID": {
-	"id": "github/amerand/CANDID",
-	"title": "github/amerand/CANDID",
-	"url": " https://rseng.github.io/software/repository/github/amerand/CANDID",
-	"content": "Companion Analysis and Non-Detection in Interferometric Data"
+	"github/tripathi/Atmospheric-Athena": {
+	"id": "github/tripathi/Atmospheric-Athena",
+	"title": "github/tripathi/Atmospheric-Athena",
+	"url": " https://rseng.github.io/software/repository/github/tripathi/Atmospheric-Athena",
+	"content": "3D Atmospheric escape model with ionizing radiative transfer"
 	},
-	"github/amerand/SPIPS": {
-	"id": "github/amerand/SPIPS",
-	"title": "github/amerand/SPIPS",
-	"url": " https://rseng.github.io/software/repository/github/amerand/SPIPS",
-	"content": "Spectro-Photo-Interferometry of Pulsating Stars"
+	"github/alex-b-davis/gubas": {
+	"id": "github/alex-b-davis/gubas",
+	"title": "github/alex-b-davis/gubas",
+	"url": " https://rseng.github.io/software/repository/github/alex-b-davis/gubas",
+	"content": "General Use Binary Asteroid Simulator"
 	},
-	"github/optimusmoose/jsms": {
-	"id": "github/optimusmoose/jsms",
-	"title": "github/optimusmoose/jsms",
-	"url": " https://rseng.github.io/software/repository/github/optimusmoose/jsms",
-	"content": "A modular JavaScript viewer for mass spectrometry data"
+	"github/DidierMurilloF/FielDHub": {
+	"id": "github/DidierMurilloF/FielDHub",
+	"title": "github/DidierMurilloF/FielDHub",
+	"url": " https://rseng.github.io/software/repository/github/DidierMurilloF/FielDHub",
+	"content": "FielDHub is an R Shiny design of experiments (DOE) app that aids in the creation of traditional, unreplicated, augmented and partially-replicated designs applied to agriculture, plant breeding, forestry, animal and biological sciences."
 	},
-	"github/theLongLab/CATE": {
-	"id": "github/theLongLab/CATE",
-	"title": "github/theLongLab/CATE",
-	"url": " https://rseng.github.io/software/repository/github/theLongLab/CATE",
-	"content": "A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests on large scale genomic data."
+	"github/ot483/NetCom": {
+	"id": "github/ot483/NetCom",
+	"title": "github/ot483/NetCom",
+	"url": " https://rseng.github.io/software/repository/github/ot483/NetCom",
+	"content": "None"
 	},
-	"github/vsbuffalo/scythe": {
-	"id": "github/vsbuffalo/scythe",
-	"title": "github/vsbuffalo/scythe",
-	"url": " https://rseng.github.io/software/repository/github/vsbuffalo/scythe",
-	"content": "A 3&#39;-end adapter contaminant trimmer"
+	"github/ryokbys/nap": {
+	"id": "github/ryokbys/nap",
+	"title": "github/ryokbys/nap",
+	"url": " https://rseng.github.io/software/repository/github/ryokbys/nap",
+	"content": "Nagoya Atomistic-simulation Package (NAP). Why don&#39;t you take a NAP? ;)"
 	},
-	"github/yuhuan-wu/mobilesal": {
-	"id": "github/yuhuan-wu/mobilesal",
-	"title": "github/yuhuan-wu/mobilesal",
-	"url": " https://rseng.github.io/software/repository/github/yuhuan-wu/mobilesal",
-	"content": "[IEEE TPAMI21] MobileSal: Extremely Efficient RGB-D Salient Object Detection [PyTorch &amp; Jittor]"
+	"github/rathnakumars/difference-smoothing": {
+	"id": "github/rathnakumars/difference-smoothing",
+	"title": "github/rathnakumars/difference-smoothing",
+	"url": " https://rseng.github.io/software/repository/github/rathnakumars/difference-smoothing",
+	"content": "MATLAB implementation of difference-smoothing algorithm and detailed results obtained by testing the codes on a large sample of simulated light curves from TDC1, described in an article published in MNRAS (arXiv:1704.00706)"
 	},
-	"github/ManuelBehrendt/Mera.jl": {
-	"id": "github/ManuelBehrendt/Mera.jl",
-	"title": "github/ManuelBehrendt/Mera.jl",
-	"url": " https://rseng.github.io/software/repository/github/ManuelBehrendt/Mera.jl",
-	"content": " Analysis Tool for Astrophysical Simulation Data in the Julia Language"
+	"github/saltastro/pyhrs": {
+	"id": "github/saltastro/pyhrs",
+	"title": "github/saltastro/pyhrs",
+	"url": " https://rseng.github.io/software/repository/github/saltastro/pyhrs",
+	"content": "Software for reducing observations from the SALT High Resolution Spectrograph"
 	},
-	"github/paulbrodersen/netgraph": {
-	"id": "github/paulbrodersen/netgraph",
-	"title": "github/paulbrodersen/netgraph",
-	"url": " https://rseng.github.io/software/repository/github/paulbrodersen/netgraph",
-	"content": "Publication-quality network visualisations in python"
+	"github/SCM-NV/qmflows-namd": {
+	"id": "github/SCM-NV/qmflows-namd",
+	"title": "github/SCM-NV/qmflows-namd",
+	"url": " https://rseng.github.io/software/repository/github/SCM-NV/qmflows-namd",
+	"content": "Package containing several workflows to compute molecular properties for nanomaterials"
 	},
-	"github/mdolab/pygeo": {
-	"id": "github/mdolab/pygeo",
-	"title": "github/mdolab/pygeo",
-	"url": " https://rseng.github.io/software/repository/github/mdolab/pygeo",
-	"content": "pyGeo provides geometric design variables and constraints suitable for gradient-based optimization."
+	"github/SCM-NV/qmflows": {
+	"id": "github/SCM-NV/qmflows",
+	"title": "github/SCM-NV/qmflows",
+	"url": " https://rseng.github.io/software/repository/github/SCM-NV/qmflows",
+	"content": "This library tackles the construction and efficient execution of computational chemistry workflows"
 	},
-	"github/anugrahjo/PySLSQP": {
-	"id": "github/anugrahjo/PySLSQP",
-	"title": "github/anugrahjo/PySLSQP",
-	"url": " https://rseng.github.io/software/repository/github/anugrahjo/PySLSQP",
-	"content": "A transparent Python interface to the SLSQP optimization algorithm, with advanced features and visualization capabilities."
+	"github/SCM-NV/pyZacros": {
+	"id": "github/SCM-NV/pyZacros",
+	"title": "github/SCM-NV/pyZacros",
+	"url": " https://rseng.github.io/software/repository/github/SCM-NV/pyZacros",
+	"content": "Python library to handle KMC codes."
 	},
-	"github/pokynmr/ipick": {
-	"id": "github/pokynmr/ipick",
-	"title": "github/pokynmr/ipick",
-	"url": " https://rseng.github.io/software/repository/github/pokynmr/ipick",
-	"content": "Multiprocessing Peak Picking Software for UCSF NMR Spectra"
+	"github/CoolWorlds/ExoPriors": {
+	"id": "github/CoolWorlds/ExoPriors",
+	"title": "github/CoolWorlds/ExoPriors",
+	"url": " https://rseng.github.io/software/repository/github/CoolWorlds/ExoPriors",
+	"content": "Calculate log-likelihood penalties to account for observational bias in exoplanet detection."
 	},
-	"github/KIT-MBS/pyREX": {
-	"id": "github/KIT-MBS/pyREX",
-	"title": "github/KIT-MBS/pyREX",
-	"url": " https://rseng.github.io/software/repository/github/KIT-MBS/pyREX",
-	"content": "Workflow-orientated python package for Replica Exchange Molecular Dynamics"
+	"github/CoolWorlds/exoinformatics": {
+	"id": "github/CoolWorlds/exoinformatics",
+	"title": "github/CoolWorlds/exoinformatics",
+	"url": " https://rseng.github.io/software/repository/github/CoolWorlds/exoinformatics",
+	"content": "None"
 	},
-	"github/stedolan/jq": {
-	"id": "github/stedolan/jq",
-	"title": "github/stedolan/jq",
-	"url": " https://rseng.github.io/software/repository/github/stedolan/jq",
-	"content": "Command-line JSON processor"
+	"github/JASHunt/Snapdragons": {
+	"id": "github/JASHunt/Snapdragons",
+	"title": "github/JASHunt/Snapdragons",
+	"url": " https://rseng.github.io/software/repository/github/JASHunt/Snapdragons",
+	"content": "Snapdragons population synthesis &amp; mock survey data generation code "
 	},
-	"github/jgagneastro/CoMover": {
-	"id": "github/jgagneastro/CoMover",
-	"title": "github/jgagneastro/CoMover",
-	"url": " https://rseng.github.io/software/repository/github/jgagneastro/CoMover",
+	"github/vferat/pycrostates": {
+	"id": "github/vferat/pycrostates",
+	"title": "github/vferat/pycrostates",
+	"url": " https://rseng.github.io/software/repository/github/vferat/pycrostates",
 	"content": "None"
 	},
-	"github/benhid/Sequoya": {
-	"id": "github/benhid/Sequoya",
-	"title": "github/benhid/Sequoya",
-	"url": " https://rseng.github.io/software/repository/github/benhid/Sequoya",
-	"content": "Solving Multiple Sequence Alignment (MSA) problems with multi-objective metaheuristics"
+	"github/jonescompneurolab/hnn-core": {
+	"id": "github/jonescompneurolab/hnn-core",
+	"title": "github/jonescompneurolab/hnn-core",
+	"url": " https://rseng.github.io/software/repository/github/jonescompneurolab/hnn-core",
+	"content": "Simulation and optimization of neural circuits for MEG/EEG source estimates"
 	},
-	"github/biocircuits/bioscrape": {
-	"id": "github/biocircuits/bioscrape",
-	"title": "github/biocircuits/bioscrape",
-	"url": " https://rseng.github.io/software/repository/github/biocircuits/bioscrape",
-	"content": "BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)"
+	"github/vfonov/DARQ": {
+	"id": "github/vfonov/DARQ",
+	"title": "github/vfonov/DARQ",
+	"url": " https://rseng.github.io/software/repository/github/vfonov/DARQ",
+	"content": "Deep learning of quality control for stereotaxic registration of human brain MRI"
 	},
-	"github/gururajw/superlite": {
-	"id": "github/gururajw/superlite",
-	"title": "github/gururajw/superlite",
-	"url": " https://rseng.github.io/software/repository/github/gururajw/superlite",
-	"content": "SuperLite: IMC-DDMC Radiation Transport Code for Interacting Transients"
+	"github/riogroup/SORA": {
+	"id": "github/riogroup/SORA",
+	"title": "github/riogroup/SORA",
+	"url": " https://rseng.github.io/software/repository/github/riogroup/SORA",
+	"content": "None"
 	},
-	"github/astrocatalogs/astrocats": {
-	"id": "github/astrocatalogs/astrocats",
-	"title": "github/astrocatalogs/astrocats",
-	"url": " https://rseng.github.io/software/repository/github/astrocatalogs/astrocats",
-	"content": "Astrocats package for constructing astronomical catalogs"
+	"github/gnave/pybranch": {
+	"id": "github/gnave/pybranch",
+	"title": "github/gnave/pybranch",
+	"url": " https://rseng.github.io/software/repository/github/gnave/pybranch",
+	"content": "A program to calculate experimental branching fractions and transition probabilities from atomic spectra"
 	},
-	"github/lbcb-sci/graphmap2": {
-	"id": "github/lbcb-sci/graphmap2",
-	"title": "github/lbcb-sci/graphmap2",
-	"url": " https://rseng.github.io/software/repository/github/lbcb-sci/graphmap2",
-	"content": "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html https://www.biorxiv.org/content/10.1101/720458v1"
+	"github/gnave/Xgremlin": {
+	"id": "github/gnave/Xgremlin",
+	"title": "github/gnave/Xgremlin",
+	"url": " https://rseng.github.io/software/repository/github/gnave/Xgremlin",
+	"content": "A code for analyzing interferograms and spectra from Fourier transform spectrometers"
 	},
-	"github/lbcb-sci/racon": {
-	"id": "github/lbcb-sci/racon",
-	"title": "github/lbcb-sci/racon",
-	"url": " https://rseng.github.io/software/repository/github/lbcb-sci/racon",
-	"content": "Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads"
+	"github/andresmegias/gildas-class-python": {
+	"id": "github/andresmegias/gildas-class-python",
+	"title": "github/andresmegias/gildas-class-python",
+	"url": " https://rseng.github.io/software/repository/github/andresmegias/gildas-class-python",
+	"content": "Python pipeline to use GILDAS-CLASS in an automated way"
 	},
-	"github/lbcb-sci/raven": {
-	"id": "github/lbcb-sci/raven",
-	"title": "github/lbcb-sci/raven",
-	"url": " https://rseng.github.io/software/repository/github/lbcb-sci/raven",
-	"content": "De novo genome assembler for long uncorrected reads"
+	"github/andresmegias/radex-python": {
+	"id": "github/andresmegias/radex-python",
+	"title": "github/andresmegias/radex-python",
+	"url": " https://rseng.github.io/software/repository/github/andresmegias/radex-python",
+	"content": "Python interface for using the software RADEX"
 	},
-	"github/tibordome/cosmic_profiles": {
-	"id": "github/tibordome/cosmic_profiles",
-	"title": "github/tibordome/cosmic_profiles",
-	"url": " https://rseng.github.io/software/repository/github/tibordome/cosmic_profiles",
-	"content": "Implements 3D point cloud algorithms for estimation and fitting of shape and density profiles"
+	"github/andresmegias/richvalues": {
+	"id": "github/andresmegias/richvalues",
+	"title": "github/andresmegias/richvalues",
+	"url": " https://rseng.github.io/software/repository/github/andresmegias/richvalues",
+	"content": "Python library for dealing with uncertainties and upper/lower limits"
 	},
-	"github/kibokov/grumpy": {
-	"id": "github/kibokov/grumpy",
-	"title": "github/kibokov/grumpy",
-	"url": " https://rseng.github.io/software/repository/github/kibokov/grumpy",
-	"content": "None"
+	"github/YesselmanLab/rna_map": {
+	"id": "github/YesselmanLab/rna_map",
+	"title": "github/YesselmanLab/rna_map",
+	"url": " https://rseng.github.io/software/repository/github/YesselmanLab/rna_map",
+	"content": "tools to do mutational profiling (MaP) analysis for RNA chemical mapping experiments."
 	},
-	"github/paucablop/chemotools": {
-	"id": "github/paucablop/chemotools",
-	"title": "github/paucablop/chemotools",
-	"url": " https://rseng.github.io/software/repository/github/paucablop/chemotools",
-	"content": "Integrate your chemometric tools with the scikit-learn API 🧪 🤖 "
+	"github/lcpp-org/RustBCA": {
+	"id": "github/lcpp-org/RustBCA",
+	"title": "github/lcpp-org/RustBCA",
+	"url": " https://rseng.github.io/software/repository/github/lcpp-org/RustBCA",
+	"content": "A Binary Collision Approximation (BCA) code for arbitrary ion-material interactions"
 	},
-	"github/myinxd/mcrgnet": {
-	"id": "github/myinxd/mcrgnet",
-	"title": "github/myinxd/mcrgnet",
-	"url": " https://rseng.github.io/software/repository/github/myinxd/mcrgnet",
-	"content": "Morphological Classification of Radio Galaxy Network"
+	"github/linqs/psl": {
+	"id": "github/linqs/psl",
+	"title": "github/linqs/psl",
+	"url": " https://rseng.github.io/software/repository/github/linqs/psl",
+	"content": "The PSL software from the University of Maryland and the University of California Santa Cruz"
 	},
-	"github/spiketools/spiketools": {
-	"id": "github/spiketools/spiketools",
-	"title": "github/spiketools/spiketools",
-	"url": " https://rseng.github.io/software/repository/github/spiketools/spiketools",
-	"content": "Tools for analyzing spiking data."
+	"github/pfeinsper/drone-swarm-search": {
+	"id": "github/pfeinsper/drone-swarm-search",
+	"title": "github/pfeinsper/drone-swarm-search",
+	"url": " https://rseng.github.io/software/repository/github/pfeinsper/drone-swarm-search",
+	"content": "The Drone Swarm Search project provides an environment for SAR missions built on PettingZoo, where agents, represented by drones, are tasked with locating targets identified as shipwrecked individuals."
 	},
-	"github/abelson-lab/smMIP-tools": {
-	"id": "github/abelson-lab/smMIP-tools",
-	"title": "github/abelson-lab/smMIP-tools",
-	"url": " https://rseng.github.io/software/repository/github/abelson-lab/smMIP-tools",
+	"github/bioexcel/biobb_wf_flexdyn": {
+	"id": "github/bioexcel/biobb_wf_flexdyn",
+	"title": "github/bioexcel/biobb_wf_flexdyn",
+	"url": " https://rseng.github.io/software/repository/github/bioexcel/biobb_wf_flexdyn",
 	"content": "None"
 	},
-	"github/jbrakensiek/CORBITS": {
-	"id": "github/jbrakensiek/CORBITS",
-	"title": "github/jbrakensiek/CORBITS",
-	"url": " https://rseng.github.io/software/repository/github/jbrakensiek/CORBITS",
-	"content": "None"
+	"github/Onogi/VIGoR": {
+	"id": "github/Onogi/VIGoR",
+	"title": "github/Onogi/VIGoR",
+	"url": " https://rseng.github.io/software/repository/github/Onogi/VIGoR",
+	"content": "Variational Bayesian Inference for Genome-Wide Regression"
 	},
-	"github/lamyj/odil": {
-	"id": "github/lamyj/odil",
-	"title": "github/lamyj/odil",
-	"url": " https://rseng.github.io/software/repository/github/lamyj/odil",
-	"content": "Odil is a C++11 library for the DICOM standard"
+	"github/r-spatial/rgee": {
+	"id": "github/r-spatial/rgee",
+	"title": "github/r-spatial/rgee",
+	"url": " https://rseng.github.io/software/repository/github/r-spatial/rgee",
+	"content": "Google Earth Engine for R"
 	},
-	"github/genome/somatic-sniper": {
-	"id": "github/genome/somatic-sniper",
-	"title": "github/genome/somatic-sniper",
-	"url": " https://rseng.github.io/software/repository/github/genome/somatic-sniper",
-	"content": "A tool to call somatic single nucleotide variants."
+	"github/glue-viz/glue": {
+	"id": "github/glue-viz/glue",
+	"title": "github/glue-viz/glue",
+	"url": " https://rseng.github.io/software/repository/github/glue-viz/glue",
+	"content": "Linked Data Visualizations Across Multiple Files"
 	},
-	"github/genome/bam-readcount": {
-	"id": "github/genome/bam-readcount",
-	"title": "github/genome/bam-readcount",
-	"url": " https://rseng.github.io/software/repository/github/genome/bam-readcount",
-	"content": "Count bases in BAM/CRAM files"
+	"github/jonathansick/MoAstro": {
+	"id": "github/jonathansick/MoAstro",
+	"title": "github/jonathansick/MoAstro",
+	"url": " https://rseng.github.io/software/repository/github/jonathansick/MoAstro",
+	"content": "MongoDB framework for observational astronomy"
 	},
-	"github/pyomeca/biorbd": {
-	"id": "github/pyomeca/biorbd",
-	"title": "github/pyomeca/biorbd",
-	"url": " https://rseng.github.io/software/repository/github/pyomeca/biorbd",
-	"content": "Biomechanical add-ons to the RigidBody Dynamics Library"
+	"github/jonathansick/starfish": {
+	"id": "github/jonathansick/starfish",
+	"title": "github/jonathansick/starfish",
+	"url": " https://rseng.github.io/software/repository/github/jonathansick/starfish",
+	"content": "GitHub StarFISH mirror (with patches)"
 	},
-	"github/pyomeca/ezc3d": {
-	"id": "github/pyomeca/ezc3d",
-	"title": "github/pyomeca/ezc3d",
-	"url": " https://rseng.github.io/software/repository/github/pyomeca/ezc3d",
-	"content": "Easy to use C3D reader/writer for C++, Python and Matlab"
+	"github/jonathansick/skyoffset": {
+	"id": "github/jonathansick/skyoffset",
+	"title": "github/jonathansick/skyoffset",
+	"url": " https://rseng.github.io/software/repository/github/jonathansick/skyoffset",
+	"content": "Sky offset optimization and mosaicing toolkit used by ANDROIDS"
 	},
-	"github/pyomeca/biosiglive": {
-	"id": "github/pyomeca/biosiglive",
-	"title": "github/pyomeca/biosiglive",
-	"url": " https://rseng.github.io/software/repository/github/pyomeca/biosiglive",
-	"content": "None"
+	"github/minzastro/unidam": {
+	"id": "github/minzastro/unidam",
+	"title": "github/minzastro/unidam",
+	"url": " https://rseng.github.io/software/repository/github/minzastro/unidam",
+	"content": "UniDAM tool: A Unified tool to estimate Distances, Ages, and Masses of stars from spectrophotometric, astrometric (Gaia) and asteroseismic data"
 	},
-	"github/prashjet/popkinmocks": {
-	"id": "github/prashjet/popkinmocks",
-	"title": "github/prashjet/popkinmocks",
-	"url": " https://rseng.github.io/software/repository/github/prashjet/popkinmocks",
-	"content": "Create mock IFU datacubes for stellar population and kinematic modelling."
+	"github/blackjax-devs/blackjax": {
+	"id": "github/blackjax-devs/blackjax",
+	"title": "github/blackjax-devs/blackjax",
+	"url": " https://rseng.github.io/software/repository/github/blackjax-devs/blackjax",
+	"content": "BlackJAX is a sampling library designed for ease of use, speed and modularity."
 	},
-	"github/brocklab/pycashier": {
-	"id": "github/brocklab/pycashier",
-	"title": "github/brocklab/pycashier",
-	"url": " https://rseng.github.io/software/repository/github/brocklab/pycashier",
-	"content": "cash in on DNA barcode tags"
+	"github/single-cell-genetics/vireo": {
+	"id": "github/single-cell-genetics/vireo",
+	"title": "github/single-cell-genetics/vireo",
+	"url": " https://rseng.github.io/software/repository/github/single-cell-genetics/vireo",
+	"content": "Demultiplexing pooled scRNA-seq data with or without genotype reference"
 	},
-	"github/kblin/ncbi-acc-download": {
-	"id": "github/kblin/ncbi-acc-download",
-	"title": "github/kblin/ncbi-acc-download",
-	"url": " https://rseng.github.io/software/repository/github/kblin/ncbi-acc-download",
-	"content": "Download files from NCBI Entrez by accession"
+	"github/single-cell-genetics/cellsnp-lite": {
+	"id": "github/single-cell-genetics/cellsnp-lite",
+	"title": "github/single-cell-genetics/cellsnp-lite",
+	"url": " https://rseng.github.io/software/repository/github/single-cell-genetics/cellsnp-lite",
+	"content": "Efficient genotyping bi-allelic SNPs on single cells"
 	},
-	"github/Julian/jsonschema": {
-	"id": "github/Julian/jsonschema",
-	"title": "github/Julian/jsonschema",
-	"url": " https://rseng.github.io/software/repository/github/Julian/jsonschema",
-	"content": "An(other) implementation of JSON Schema for Python"
+	"github/jianlin-cheng/DRCon": {
+	"id": "github/jianlin-cheng/DRCon",
+	"title": "github/jianlin-cheng/DRCon",
+	"url": " https://rseng.github.io/software/repository/github/jianlin-cheng/DRCon",
+	"content": "Deep dilated convolutional residual neural network for predicting interchain contacts of protein homodimers"
 	},
-	"github/lczech/gappa": {
-	"id": "github/lczech/gappa",
-	"title": "github/lczech/gappa",
-	"url": " https://rseng.github.io/software/repository/github/lczech/gappa",
-	"content": "A toolkit for analyzing and visualizing phylogenetic (placement) data"
+	"github/damocles-code/damocles": {
+	"id": "github/damocles-code/damocles",
+	"title": "github/damocles-code/damocles",
+	"url": " https://rseng.github.io/software/repository/github/damocles-code/damocles",
+	"content": "None"
 	},
-	"github/biocore/unifrac": {
-	"id": "github/biocore/unifrac",
-	"title": "github/biocore/unifrac",
-	"url": " https://rseng.github.io/software/repository/github/biocore/unifrac",
-	"content": "high-performance phylogenetic diversity calculations (dev)"
+	"github/DReichLab/EIG": {
+	"id": "github/DReichLab/EIG",
+	"title": "github/DReichLab/EIG",
+	"url": " https://rseng.github.io/software/repository/github/DReichLab/EIG",
+	"content": "The EIGENSOFT package combines functionality from our population genetics methods (Patterson et al. 2006) and our EIGENSTRAT stratification correction method (Price et al. 2006)."
 	},
-	"github/biocore/emperor": {
-	"id": "github/biocore/emperor",
-	"title": "github/biocore/emperor",
-	"url": " https://rseng.github.io/software/repository/github/biocore/emperor",
-	"content": "Emperor a tool for the analysis and visualization of large microbial ecology datasets"
+	"github/c3s-magic/c3s-magic-wps": {
+	"id": "github/c3s-magic/c3s-magic-wps",
+	"title": "github/c3s-magic/c3s-magic-wps",
+	"url": " https://rseng.github.io/software/repository/github/c3s-magic/c3s-magic-wps",
+	"content": "None"
 	},
-	"github/biocore/scikit-bio": {
-	"id": "github/biocore/scikit-bio",
-	"title": "github/biocore/scikit-bio",
-	"url": " https://rseng.github.io/software/repository/github/biocore/scikit-bio",
-	"content": "scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics."
+	"github/yjx1217/RecombineX": {
+	"id": "github/yjx1217/RecombineX",
+	"title": "github/yjx1217/RecombineX",
+	"url": " https://rseng.github.io/software/repository/github/yjx1217/RecombineX",
+	"content": "A computational framework for tetrad-based genotyping &amp; recombination landscape analysis"
 	},
-	"github/biocore/unifrac-binaries": {
-	"id": "github/biocore/unifrac-binaries",
-	"title": "github/biocore/unifrac-binaries",
-	"url": " https://rseng.github.io/software/repository/github/biocore/unifrac-binaries",
-	"content": "Fast phylogenetic diversity calculations"
+	"github/bluenote-1577/sylph": {
+	"id": "github/bluenote-1577/sylph",
+	"title": "github/bluenote-1577/sylph",
+	"url": " https://rseng.github.io/software/repository/github/bluenote-1577/sylph",
+	"content": "ultrafast ANI querying and taxonomic profiling for metagenomic shotgun samples  by abundance-corrected minhash."
 	},
-	"github/biocore/sortmerna": {
-	"id": "github/biocore/sortmerna",
-	"title": "github/biocore/sortmerna",
-	"url": " https://rseng.github.io/software/repository/github/biocore/sortmerna",
-	"content": "SortMeRNA: next-generation sequence filtering and alignment tool"
+	"github/LLNL/echemfem": {
+	"id": "github/LLNL/echemfem",
+	"title": "github/LLNL/echemfem",
+	"url": " https://rseng.github.io/software/repository/github/LLNL/echemfem",
+	"content": "Finite Element Method for Electrochemical Transport (EchemFEM)"
 	},
-	"github/biocore/deblur": {
-	"id": "github/biocore/deblur",
-	"title": "github/biocore/deblur",
-	"url": " https://rseng.github.io/software/repository/github/biocore/deblur",
-	"content": "Deblur is a greedy deconvolution algorithm based on known read error profiles."
+	"github/fabiorigamonti/bang": {
+	"id": "github/fabiorigamonti/bang",
+	"title": "github/fabiorigamonti/bang",
+	"url": " https://rseng.github.io/software/repository/github/fabiorigamonti/bang",
+	"content": "GPU/CPU optimized software for morpho-kinematic galaxy parameter estimation."
 	},
-	"github/ziotom78/dacapo_calibration": {
-	"id": "github/ziotom78/dacapo_calibration",
-	"title": "github/ziotom78/dacapo_calibration",
-	"url": " https://rseng.github.io/software/repository/github/ziotom78/dacapo_calibration",
-	"content": "Calibrating TODs using the Da Capo algorithm"
+	"github/nmfs-fish-tools/ssmse": {
+	"id": "github/nmfs-fish-tools/ssmse",
+	"title": "github/nmfs-fish-tools/ssmse",
+	"url": " https://rseng.github.io/software/repository/github/nmfs-fish-tools/ssmse",
+	"content": "Management Strategy Evaluation (MSE) using Stock Synthesis (SS3)"
 	},
-	"github/ziotom78/Healpix.jl": {
-	"id": "github/ziotom78/Healpix.jl",
-	"title": "github/ziotom78/Healpix.jl",
-	"url": " https://rseng.github.io/software/repository/github/ziotom78/Healpix.jl",
-	"content": "Healpix library written in Julia"
+	"github/SJLeo/FFSD": {
+	"id": "github/SJLeo/FFSD",
+	"title": "github/SJLeo/FFSD",
+	"url": " https://rseng.github.io/software/repository/github/SJLeo/FFSD",
+	"content": "Pytorch implementation of our paper accepted by IEEE TNNLS, 2022 -- Distilling a Powerful Student Model via Online Knowledge Distillation"
 	},
-	"github/ziotom78/libpolycomp": {
-	"id": "github/ziotom78/libpolycomp",
-	"title": "github/ziotom78/libpolycomp",
-	"url": " https://rseng.github.io/software/repository/github/ziotom78/libpolycomp",
-	"content": "A compression library for one-dimensional numerical datastreams"
+	"github/pangeo-data/climpred": {
+	"id": "github/pangeo-data/climpred",
+	"title": "github/pangeo-data/climpred",
+	"url": " https://rseng.github.io/software/repository/github/pangeo-data/climpred",
+	"content": ":earth_americas: Verification of weather and climate forecasts. :earth_africa:"
 	},
-	"github/jo276/EvapMass": {
-	"id": "github/jo276/EvapMass",
-	"title": "github/jo276/EvapMass",
-	"url": " https://rseng.github.io/software/repository/github/jo276/EvapMass",
-	"content": "None"
+	"github/clwainwright/CosmoTransitions": {
+	"id": "github/clwainwright/CosmoTransitions",
+	"title": "github/clwainwright/CosmoTransitions",
+	"url": " https://rseng.github.io/software/repository/github/clwainwright/CosmoTransitions",
+	"content": "A package for analyzing finite or zero-temperature cosmological phase transitions driven by single or multiple scalar fields."
 	},
 	"github/jfmrod/MAPseq": {
 	"id": "github/jfmrod/MAPseq",
@@ -16683,1439 +16365,1409 @@
 	"url": " https://rseng.github.io/software/repository/github/jfmrod/MAPseq",
 	"content": "highthroughput rRNA sequence classification and OTU mapping for metagenomic samples"
 	},
-	"github/Smith42/pix2prof": {
-	"id": "github/Smith42/pix2prof",
-	"title": "github/Smith42/pix2prof",
-	"url": " https://rseng.github.io/software/repository/github/Smith42/pix2prof",
-	"content": "Pix2Prof: extracting sequential galaxy data with a language model"
-	},
-	"github/Smith42/astroddpm": {
-	"id": "github/Smith42/astroddpm",
-	"title": "github/Smith42/astroddpm",
-	"url": " https://rseng.github.io/software/repository/github/Smith42/astroddpm",
-	"content": "A denoising diffusion probabilistic model synthesises galaxies that are qualitatively and physically indistinguishable from the real thing."
-	},
-	"github/Smith42/XDF-GAN": {
-	"id": "github/Smith42/XDF-GAN",
-	"title": "github/Smith42/XDF-GAN",
-	"url": " https://rseng.github.io/software/repository/github/Smith42/XDF-GAN",
-	"content": "A GAN for the generation of mock astronomical surveys"
-	},
-	"github/asntech/intervene": {
-	"id": "github/asntech/intervene",
-	"title": "github/asntech/intervene",
-	"url": " https://rseng.github.io/software/repository/github/asntech/intervene",
-	"content": "Intervene: a tool for intersection and visualization of multiple genomic region and gene sets"
-	},
-	"github/MilesCranmer/PySR": {
-	"id": "github/MilesCranmer/PySR",
-	"title": "github/MilesCranmer/PySR",
-	"url": " https://rseng.github.io/software/repository/github/MilesCranmer/PySR",
-	"content": "High-Performance Symbolic Regression in Python and Julia"
+	"github/fdebras/ECLIPS3D": {
+	"id": "github/fdebras/ECLIPS3D",
+	"title": "github/fdebras/ECLIPS3D",
+	"url": " https://rseng.github.io/software/repository/github/fdebras/ECLIPS3D",
+	"content": "Public code for linear wave and circulation calculations, developed originally for planetary atmospheres."
 	},
-	"github/RaRe-Technologies/gensim": {
-	"id": "github/RaRe-Technologies/gensim",
-	"title": "github/RaRe-Technologies/gensim",
-	"url": " https://rseng.github.io/software/repository/github/RaRe-Technologies/gensim",
-	"content": "Topic Modelling for Humans"
+	"github/deweylab/RSEM": {
+	"id": "github/deweylab/RSEM",
+	"title": "github/deweylab/RSEM",
+	"url": " https://rseng.github.io/software/repository/github/deweylab/RSEM",
+	"content": "RSEM: accurate quantification of gene and isoform expression from RNA-Seq data"
 	},
-	"github/colour-science/colour": {
-	"id": "github/colour-science/colour",
-	"title": "github/colour-science/colour",
-	"url": " https://rseng.github.io/software/repository/github/colour-science/colour",
-	"content": "Colour Science for Python"
+	"github/AlexanderJuestel/pyheatdemand": {
+	"id": "github/AlexanderJuestel/pyheatdemand",
+	"title": "github/AlexanderJuestel/pyheatdemand",
+	"url": " https://rseng.github.io/software/repository/github/AlexanderJuestel/pyheatdemand",
+	"content": "Processing Tool for Heat Demand Data"
 	},
-	"github/pacificbiosciences/bam2fastx": {
-	"id": "github/pacificbiosciences/bam2fastx",
-	"title": "github/pacificbiosciences/bam2fastx",
-	"url": " https://rseng.github.io/software/repository/github/pacificbiosciences/bam2fastx",
-	"content": "Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files."
+	"github/jmschrei/pomegranate": {
+	"id": "github/jmschrei/pomegranate",
+	"title": "github/jmschrei/pomegranate",
+	"url": " https://rseng.github.io/software/repository/github/jmschrei/pomegranate",
+	"content": "Fast, flexible and easy to use probabilistic modelling in Python."
 	},
-	"github/jmejia8/Metaheuristics.jl": {
-	"id": "github/jmejia8/Metaheuristics.jl",
-	"title": "github/jmejia8/Metaheuristics.jl",
-	"url": " https://rseng.github.io/software/repository/github/jmejia8/Metaheuristics.jl",
-	"content": "High-performance metaheuristics for optimization coded purely in Julia."
+	"github/jdhenshaw/SCOUSE": {
+	"id": "github/jdhenshaw/SCOUSE",
+	"title": "github/jdhenshaw/SCOUSE",
+	"url": " https://rseng.github.io/software/repository/github/jdhenshaw/SCOUSE",
+	"content": "Semi-automated multi-COmponent Universal Spectral-line fitting Engine"
 	},
-	"github/dtamayo/reboundx": {
-	"id": "github/dtamayo/reboundx",
-	"title": "github/dtamayo/reboundx",
-	"url": " https://rseng.github.io/software/repository/github/dtamayo/reboundx",
-	"content": "A library for adding additional forces to the REBOUND N-body integration package"
+	"github/jdhenshaw/scousepy": {
+	"id": "github/jdhenshaw/scousepy",
+	"title": "github/jdhenshaw/scousepy",
+	"url": " https://rseng.github.io/software/repository/github/jdhenshaw/scousepy",
+	"content": "ScousePy"
 	},
-	"github/aztekas-code/aztekas-main": {
-	"id": "github/aztekas-code/aztekas-main",
-	"title": "github/aztekas-code/aztekas-main",
-	"url": " https://rseng.github.io/software/repository/github/aztekas-code/aztekas-main",
-	"content": "GRHD numerical code "
+	"github/jdhenshaw/acorns": {
+	"id": "github/jdhenshaw/acorns",
+	"title": "github/jdhenshaw/acorns",
+	"url": " https://rseng.github.io/software/repository/github/jdhenshaw/acorns",
+	"content": "Agglomerative Clustering for ORganising Nested Structures"
 	},
-	"github/fabiopardo/tonic": {
-	"id": "github/fabiopardo/tonic",
-	"title": "github/fabiopardo/tonic",
-	"url": " https://rseng.github.io/software/repository/github/fabiopardo/tonic",
-	"content": "Tonic RL library"
+	"github/CodeEagle22/SIRITVIS": {
+	"id": "github/CodeEagle22/SIRITVIS",
+	"title": "github/CodeEagle22/SIRITVIS",
+	"url": " https://rseng.github.io/software/repository/github/CodeEagle22/SIRITVIS",
+	"content": "None"
 	},
-	"github/fabiopardo/qmap": {
-	"id": "github/fabiopardo/qmap",
-	"title": "github/fabiopardo/qmap",
-	"url": " https://rseng.github.io/software/repository/github/fabiopardo/qmap",
-	"content": "Scaling All-Goals Updates in Reinforcement Learning Using Convolutional Neural Networks"
+	"github/maxmahlke/ssos": {
+	"id": "github/maxmahlke/ssos",
+	"title": "github/maxmahlke/ssos",
+	"url": " https://rseng.github.io/software/repository/github/maxmahlke/ssos",
+	"content": "Pipeline to recover astrometry and photometry of Solar System Objects in imaging surveys"
 	},
-	"github/IRCAD/camp": {
-	"id": "github/IRCAD/camp",
-	"title": "github/IRCAD/camp",
-	"url": " https://rseng.github.io/software/repository/github/IRCAD/camp",
-	"content": "C++ multi-purpose reflection library"
+	"github/julblarod/SOPHISM": {
+	"id": "github/julblarod/SOPHISM",
+	"title": "github/julblarod/SOPHISM",
+	"url": " https://rseng.github.io/software/repository/github/julblarod/SOPHISM",
+	"content": "Repository for software instrument simulator SOPHISM"
 	},
-	"github/toshiyan/cmblensplus": {
-	"id": "github/toshiyan/cmblensplus",
-	"title": "github/toshiyan/cmblensplus",
-	"url": " https://rseng.github.io/software/repository/github/toshiyan/cmblensplus",
-	"content": "None"
+	"github/nathanchara/l1periodogram": {
+	"id": "github/nathanchara/l1periodogram",
+	"title": "github/nathanchara/l1periodogram",
+	"url": " https://rseng.github.io/software/repository/github/nathanchara/l1periodogram",
+	"content": "This repository contains a Python implementation of the l1 periodogram as described in Hara, Boué, Laskar, Correia 2017, MNRAS, Vol. 464, Issue 1, p.1220-1246, with a few additions."
 	},
-	"github/vrodgom/statmorph": {
-	"id": "github/vrodgom/statmorph",
-	"title": "github/vrodgom/statmorph",
-	"url": " https://rseng.github.io/software/repository/github/vrodgom/statmorph",
-	"content": "Python code for calculating non-parametric morphological diagnostics of galaxy images."
+	"github/ssadedin/bazam": {
+	"id": "github/ssadedin/bazam",
+	"title": "github/ssadedin/bazam",
+	"url": " https://rseng.github.io/software/repository/github/ssadedin/bazam",
+	"content": "A read extraction and realignment tool for next generation sequencing data"
 	},
-	"github/elnjensen/Tapir": {
-	"id": "github/elnjensen/Tapir",
-	"title": "github/elnjensen/Tapir",
-	"url": " https://rseng.github.io/software/repository/github/elnjensen/Tapir",
-	"content": "Tools for planning astronomical observations (transit visibility, airmass plots, finding charts)"
+	"github/dynamics-of-stellar-systems/dynamite_release": {
+	"id": "github/dynamics-of-stellar-systems/dynamite_release",
+	"title": "github/dynamics-of-stellar-systems/dynamite_release",
+	"url": " https://rseng.github.io/software/repository/github/dynamics-of-stellar-systems/dynamite_release",
+	"content": "dynamics, age and metallicity indicators tracing evolution"
 	},
-	"github/christopherburke/tess-point": {
-	"id": "github/christopherburke/tess-point",
-	"title": "github/christopherburke/tess-point",
-	"url": " https://rseng.github.io/software/repository/github/christopherburke/tess-point",
-	"content": "Determine pixel coordinates for TESS targets"
+	"github/astroumd/miriad": {
+	"id": "github/astroumd/miriad",
+	"title": "github/astroumd/miriad",
+	"url": " https://rseng.github.io/software/repository/github/astroumd/miriad",
+	"content": "Classic CARMA version of MIRIAD"
 	},
-	"github/smithlabcode/falco": {
-	"id": "github/smithlabcode/falco",
-	"title": "github/smithlabcode/falco",
-	"url": " https://rseng.github.io/software/repository/github/smithlabcode/falco",
-	"content": "A C++ drop-in replacement of FastQC to assess the quality of sequence read data"
+	"github/fraserw/TRIPPy": {
+	"id": "github/fraserw/TRIPPy",
+	"title": "github/fraserw/TRIPPy",
+	"url": " https://rseng.github.io/software/repository/github/fraserw/TRIPPy",
+	"content": "Python based Trailed Source Photometry"
 	},
-	"github/smithlabcode/abismal": {
-	"id": "github/smithlabcode/abismal",
-	"title": "github/smithlabcode/abismal",
-	"url": " https://rseng.github.io/software/repository/github/smithlabcode/abismal",
-	"content": "Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome."
+	"github/wesleyburr/subMaldi": {
+	"id": "github/wesleyburr/subMaldi",
+	"title": "github/wesleyburr/subMaldi",
+	"url": " https://rseng.github.io/software/repository/github/wesleyburr/subMaldi",
+	"content": "subMaldi: a package for R"
 	},
-	"github/smithlabcode/dnmtools": {
-	"id": "github/smithlabcode/dnmtools",
-	"title": "github/smithlabcode/dnmtools",
-	"url": " https://rseng.github.io/software/repository/github/smithlabcode/dnmtools",
-	"content": "Tools for analyzing DNA methylation data"
+	"github/Caltech-IPAC/Montage": {
+	"id": "github/Caltech-IPAC/Montage",
+	"title": "github/Caltech-IPAC/Montage",
+	"url": " https://rseng.github.io/software/repository/github/Caltech-IPAC/Montage",
+	"content": "Image Mosaics for Astronomers"
 	},
-	"github/smithlabcode/preseq": {
-	"id": "github/smithlabcode/preseq",
-	"title": "github/smithlabcode/preseq",
-	"url": " https://rseng.github.io/software/repository/github/smithlabcode/preseq",
-	"content": "Software for predicting library complexity and genome coverage in high-throughput sequencing."
+	"github/Caltech-IPAC/kete": {
+	"id": "github/Caltech-IPAC/kete",
+	"title": "github/Caltech-IPAC/kete",
+	"url": " https://rseng.github.io/software/repository/github/Caltech-IPAC/kete",
+	"content": "Kete Solar System Survey tools"
 	},
-	"github/carronj/lenspyx": {
-	"id": "github/carronj/lenspyx",
-	"title": "github/carronj/lenspyx",
-	"url": " https://rseng.github.io/software/repository/github/carronj/lenspyx",
-	"content": "Curved-sky python lensed CMB maps simulation package"
+	"github/linsalrob/PhiSpy": {
+	"id": "github/linsalrob/PhiSpy",
+	"title": "github/linsalrob/PhiSpy",
+	"url": " https://rseng.github.io/software/repository/github/linsalrob/PhiSpy",
+	"content": "Prediction of prophages from bacterial genomes"
 	},
-	"github/carronj/LensIt": {
-	"id": "github/carronj/LensIt",
-	"title": "github/carronj/LensIt",
-	"url": " https://rseng.github.io/software/repository/github/carronj/LensIt",
+	"github/molscat/molscat": {
+	"id": "github/molscat/molscat",
+	"title": "github/molscat/molscat",
+	"url": " https://rseng.github.io/software/repository/github/molscat/molscat",
 	"content": "None"
 	},
-	"github/carronj/plancklens": {
-	"id": "github/carronj/plancklens",
-	"title": "github/carronj/plancklens",
-	"url": " https://rseng.github.io/software/repository/github/carronj/plancklens",
-	"content": "Planck 2018 lensing pipeline"
-	},
-	"github/TriPed-Robot/TriP": {
-	"id": "github/TriPed-Robot/TriP",
-	"title": "github/TriPed-Robot/TriP",
-	"url": " https://rseng.github.io/software/repository/github/TriPed-Robot/TriP",
-	"content": "Python package for inverse kinematic calculations of hybrid serial parallel robots"
-	},
-	"github/GATB/gatb-core": {
-	"id": "github/GATB/gatb-core",
-	"title": "github/GATB/gatb-core",
-	"url": " https://rseng.github.io/software/repository/github/GATB/gatb-core",
-	"content": "Core library of the Genome Analysis Toolbox with de-Bruijn graph"
+	"github/CGATOxford/UMI-tools": {
+	"id": "github/CGATOxford/UMI-tools",
+	"title": "github/CGATOxford/UMI-tools",
+	"url": " https://rseng.github.io/software/repository/github/CGATOxford/UMI-tools",
+	"content": "Tools for handling Unique Molecular Identifiers in NGS data sets"
 	},
-	"github/GATB/MindTheGap": {
-	"id": "github/GATB/MindTheGap",
-	"title": "github/GATB/MindTheGap",
-	"url": " https://rseng.github.io/software/repository/github/GATB/MindTheGap",
-	"content": "MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool."
+	"github/pymc-devs/pymc3": {
+	"id": "github/pymc-devs/pymc3",
+	"title": "github/pymc-devs/pymc3",
+	"url": " https://rseng.github.io/software/repository/github/pymc-devs/pymc3",
+	"content": "Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano"
 	},
-	"github/GATB/simka": {
-	"id": "github/GATB/simka",
-	"title": "github/GATB/simka",
-	"url": " https://rseng.github.io/software/repository/github/GATB/simka",
-	"content": "Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets."
+	"github/PyPSA/linopy": {
+	"id": "github/PyPSA/linopy",
+	"title": "github/PyPSA/linopy",
+	"url": " https://rseng.github.io/software/repository/github/PyPSA/linopy",
+	"content": "Linear optimization with N-D labeled arrays in Python"
 	},
-	"github/GATB/bcalm": {
-	"id": "github/GATB/bcalm",
-	"title": "github/GATB/bcalm",
-	"url": " https://rseng.github.io/software/repository/github/GATB/bcalm",
-	"content": "compacted de Bruijn graph construction in low memory"
+	"github/PyPSA/atlite": {
+	"id": "github/PyPSA/atlite",
+	"title": "github/PyPSA/atlite",
+	"url": " https://rseng.github.io/software/repository/github/PyPSA/atlite",
+	"content": "Atlite: Light-weight version of Aarhus RE Atlas for converting weather data to power systems data"
 	},
-	"github/mortonne/psifr": {
-	"id": "github/mortonne/psifr",
-	"title": "github/mortonne/psifr",
-	"url": " https://rseng.github.io/software/repository/github/mortonne/psifr",
-	"content": "Psifr: Analysis and visualization of free recall data"
+	"github/JuliaGeodynamics/GeophysicalModelGenerator.jl": {
+	"id": "github/JuliaGeodynamics/GeophysicalModelGenerator.jl",
+	"title": "github/JuliaGeodynamics/GeophysicalModelGenerator.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaGeodynamics/GeophysicalModelGenerator.jl",
+	"content": "Import, process and interpret geophysical data sets to be used in numerical models."
 	},
-	"github/altjerue/paramo": {
-	"id": "github/altjerue/paramo",
-	"title": "github/altjerue/paramo",
-	"url": " https://rseng.github.io/software/repository/github/altjerue/paramo",
-	"content": "Vine a Comala porque me dijeron que acá vivía mi padre, un tal Pedro Páramo."
+	"github/sosl/H-FISTA": {
+	"id": "github/sosl/H-FISTA",
+	"title": "github/sosl/H-FISTA",
+	"url": " https://rseng.github.io/software/repository/github/sosl/H-FISTA",
+	"content": "Hierarchical FISTA - phase retrieval for pulsar spectroscopy"
 	},
-	"github/neslusan/BELTCROSS2": {
-	"id": "github/neslusan/BELTCROSS2",
-	"title": "github/neslusan/BELTCROSS2",
-	"url": " https://rseng.github.io/software/repository/github/neslusan/BELTCROSS2",
-	"content": "A computer program calculating the closest approaches of asteroid to the mean orbits of meteoroid streams, new version upploaded on January 15, 2024."
+	"github/nikhilroxtomar/FANet": {
+	"id": "github/nikhilroxtomar/FANet",
+	"title": "github/nikhilroxtomar/FANet",
+	"url": " https://rseng.github.io/software/repository/github/nikhilroxtomar/FANet",
+	"content": "FANet: A Feedback Attention Network for Improved Biomedical Image Segmentation [IEEE Transactions on Neural Networks and Learning Systems]"
 	},
-	"github/palaeoware/trevosim": {
-	"id": "github/palaeoware/trevosim",
-	"title": "github/palaeoware/trevosim",
-	"url": " https://rseng.github.io/software/repository/github/palaeoware/trevosim",
-	"content": "TREvoSim - The [Tr]ee [Evo]lutionary [Sim]ulator program"
+	"github/dokkum/maskfill": {
+	"id": "github/dokkum/maskfill",
+	"title": "github/dokkum/maskfill",
+	"url": " https://rseng.github.io/software/repository/github/dokkum/maskfill",
+	"content": "Fill in masked values in an image"
 	},
-	"github/palaeoware/revosim": {
-	"id": "github/palaeoware/revosim",
-	"title": "github/palaeoware/revosim",
-	"url": " https://rseng.github.io/software/repository/github/palaeoware/revosim",
-	"content": "REvoSim - The [R]apid [Evo]lutionary [Sim]ulator - An individual-based evolutionary model"
+	"github/JuliaArrays/InfiniteArrays.jl": {
+	"id": "github/JuliaArrays/InfiniteArrays.jl",
+	"title": "github/JuliaArrays/InfiniteArrays.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaArrays/InfiniteArrays.jl",
+	"content": "A Julia package for representing infinite-dimensional arrays"
 	},
-	"github/fast-data-transfer/fdt": {
-	"id": "github/fast-data-transfer/fdt",
-	"title": "github/fast-data-transfer/fdt",
-	"url": " https://rseng.github.io/software/repository/github/fast-data-transfer/fdt",
-	"content": "FDT is an Application for Efficient Data Transfers which is capable of reading and writing at disk speed over wide area networks (with standard TCP). It is written in Java, runs an all major platforms and it is easy to use.  FDT is based on an asynchronous, flexible multithreaded system and is using the capabilities of the Java NIO libraries."
+	"github/JuliaArrays/BlockArrays.jl": {
+	"id": "github/JuliaArrays/BlockArrays.jl",
+	"title": "github/JuliaArrays/BlockArrays.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaArrays/BlockArrays.jl",
+	"content": "BlockArrays for Julia"
 	},
-	"github/FelixKrueger/TrimGalore": {
-	"id": "github/FelixKrueger/TrimGalore",
-	"title": "github/FelixKrueger/TrimGalore",
-	"url": " https://rseng.github.io/software/repository/github/FelixKrueger/TrimGalore",
-	"content": "A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data"
+	"github/JuliaArrays/LazyArrays.jl": {
+	"id": "github/JuliaArrays/LazyArrays.jl",
+	"title": "github/JuliaArrays/LazyArrays.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaArrays/LazyArrays.jl",
+	"content": "Lazy arrays and linear algebra in Julia"
 	},
-	"github/MannLabs/alphapept": {
-	"id": "github/MannLabs/alphapept",
-	"title": "github/MannLabs/alphapept",
-	"url": " https://rseng.github.io/software/repository/github/MannLabs/alphapept",
-	"content": "A modular, python-based framework for mass spectrometry. Powered by nbdev."
+	"github/UCD4IDS/WaveletsExt.jl": {
+	"id": "github/UCD4IDS/WaveletsExt.jl",
+	"title": "github/UCD4IDS/WaveletsExt.jl",
+	"url": " https://rseng.github.io/software/repository/github/UCD4IDS/WaveletsExt.jl",
+	"content": "A Julia extension package to Wavelets.jl"
 	},
-	"github/mkunimoto/LEO-vetter": {
-	"id": "github/mkunimoto/LEO-vetter",
-	"title": "github/mkunimoto/LEO-vetter",
-	"url": " https://rseng.github.io/software/repository/github/mkunimoto/LEO-vetter",
-	"content": "Automated vetting for TESS planet candidates"
+	"github/PathoGenOmics-Lab/get_mnv": {
+	"id": "github/PathoGenOmics-Lab/get_mnv",
+	"title": "github/PathoGenOmics-Lab/get_mnv",
+	"url": " https://rseng.github.io/software/repository/github/PathoGenOmics-Lab/get_mnv",
+	"content": "Identifies multiple SNVs within the same codon, reclassifies them as MNVs, and accurately computes resulting amino acid changes from genomic reads"
 	},
-	"github/christinahedges/contaminante": {
-	"id": "github/christinahedges/contaminante",
-	"title": "github/christinahedges/contaminante",
-	"url": " https://rseng.github.io/software/repository/github/christinahedges/contaminante",
-	"content": "Find the contaminant transiting source in Kepler, K2 or TESS data."
+	"github/rgmyr/corebreakout": {
+	"id": "github/rgmyr/corebreakout",
+	"title": "github/rgmyr/corebreakout",
+	"url": " https://rseng.github.io/software/repository/github/rgmyr/corebreakout",
+	"content": "Segmentation and depth-alignment of geological core sample image columns via Mask-RCNN"
 	},
-	"github/soichiro-hattori/unpopular": {
-	"id": "github/soichiro-hattori/unpopular",
-	"title": "github/soichiro-hattori/unpopular",
-	"url": " https://rseng.github.io/software/repository/github/soichiro-hattori/unpopular",
-	"content": "An implementation of the Causal Pixel Model (CPM) for TESS data."
+	"github/occupationMeasurement/occupationMeasurement": {
+	"id": "github/occupationMeasurement/occupationMeasurement",
+	"title": "github/occupationMeasurement/occupationMeasurement",
+	"url": " https://rseng.github.io/software/repository/github/occupationMeasurement/occupationMeasurement",
+	"content": "A package to help with the (interactive) coding and measurement of occupations"
 	},
-	"github/HAWinther/FML": {
-	"id": "github/HAWinther/FML",
-	"title": "github/HAWinther/FML",
-	"url": " https://rseng.github.io/software/repository/github/HAWinther/FML",
-	"content": "A C++ library for working with particles and grids in a parallel setting."
+	"github/SciOmicsLab/PhenoComb": {
+	"id": "github/SciOmicsLab/PhenoComb",
+	"title": "github/SciOmicsLab/PhenoComb",
+	"url": " https://rseng.github.io/software/repository/github/SciOmicsLab/PhenoComb",
+	"content": "An R package for combinatorial analysis of phenotypes"
 	},
-	"github/HAWinther/MG-PICOLA-PUBLIC": {
-	"id": "github/HAWinther/MG-PICOLA-PUBLIC",
-	"title": "github/HAWinther/MG-PICOLA-PUBLIC",
-	"url": " https://rseng.github.io/software/repository/github/HAWinther/MG-PICOLA-PUBLIC",
-	"content": "This is a modified version of the L-PICOLA code extending the COLA approach for simulating cosmological structure formation to theories that exhibit scale-dependent growth. It can compute matter power-spectra (CDM and total), redshift-space multipole power-spectra P0,P2,P4 and do halofinding on the fly. It can also include the effects of massive neutrinos on structure formation."
+	"github/pudu-py/pudu": {
+	"id": "github/pudu-py/pudu",
+	"title": "github/pudu-py/pudu",
+	"url": " https://rseng.github.io/software/repository/github/pudu-py/pudu",
+	"content": "A Python library for explainability of machine learinng algorithms in an agnostic, deterministic, and simple way."
 	},
-	"github/lehtiolab/msstitch": {
-	"id": "github/lehtiolab/msstitch",
-	"title": "github/lehtiolab/msstitch",
-	"url": " https://rseng.github.io/software/repository/github/lehtiolab/msstitch",
-	"content": "MS proteomics post-processing utilities"
+	"github/rx-li/EasyCellType": {
+	"id": "github/rx-li/EasyCellType",
+	"title": "github/rx-li/EasyCellType",
+	"url": " https://rseng.github.io/software/repository/github/rx-li/EasyCellType",
+	"content": "None"
 	},
-	"github/ERPI-UL/HELP-VRclient": {
-	"id": "github/ERPI-UL/HELP-VRclient",
-	"title": "github/ERPI-UL/HELP-VRclient",
-	"url": " https://rseng.github.io/software/repository/github/ERPI-UL/HELP-VRclient",
-	"content": "Hybrid Extended Learning Platform (HELP) - VR client for Meta Quest"
+	"github/tomlouden/spiderman": {
+	"id": "github/tomlouden/spiderman",
+	"title": "github/tomlouden/spiderman",
+	"url": " https://rseng.github.io/software/repository/github/tomlouden/spiderman",
+	"content": "A fast code to simulate secondary transits and phase curves"
 	},
-	"github/gdalle/HiddenMarkovModels.jl": {
-	"id": "github/gdalle/HiddenMarkovModels.jl",
-	"title": "github/gdalle/HiddenMarkovModels.jl",
-	"url": " https://rseng.github.io/software/repository/github/gdalle/HiddenMarkovModels.jl",
-	"content": "A Julia package for simulation, inference and learning of Hidden Markov Models."
+	"github/egjergo/galcem": {
+	"id": "github/egjergo/galcem",
+	"title": "github/egjergo/galcem",
+	"url": " https://rseng.github.io/software/repository/github/egjergo/galcem",
+	"content": "Please email us to get a JupyterHub account, or for any other queries"
 	},
-	"github/JLBLine/PUMA": {
-	"id": "github/JLBLine/PUMA",
-	"title": "github/JLBLine/PUMA",
-	"url": " https://rseng.github.io/software/repository/github/JLBLine/PUMA",
+	"github/tonhingm/PHOTOe-v1": {
+	"id": "github/tonhingm/PHOTOe-v1",
+	"title": "github/tonhingm/PHOTOe-v1",
+	"url": " https://rseng.github.io/software/repository/github/tonhingm/PHOTOe-v1",
 	"content": "None"
 	},
-	"github/JLBLine/WODEN": {
-	"id": "github/JLBLine/WODEN",
-	"title": "github/JLBLine/WODEN",
-	"url": " https://rseng.github.io/software/repository/github/JLBLine/WODEN",
-	"content": "CUDA code designed to simulate interferometric data using point, Gaussian, and shapelet sky models"
-	},
-	"github/perfanalytics/pose2sim": {
-	"id": "github/perfanalytics/pose2sim",
-	"title": "github/perfanalytics/pose2sim",
-	"url": " https://rseng.github.io/software/repository/github/perfanalytics/pose2sim",
-	"content": "Markerless kinematics, from OpenPose to OpenSim"
+	"github/stedolan/jq": {
+	"id": "github/stedolan/jq",
+	"title": "github/stedolan/jq",
+	"url": " https://rseng.github.io/software/repository/github/stedolan/jq",
+	"content": "Command-line JSON processor"
 	},
-	"github/bcbio/bcbio.variation.recall": {
-	"id": "github/bcbio/bcbio.variation.recall",
-	"title": "github/bcbio/bcbio.variation.recall",
-	"url": " https://rseng.github.io/software/repository/github/bcbio/bcbio.variation.recall",
-	"content": "Parallel merging, squaring off and ensemble calling for genomic variants"
+	"github/legolason/PyQSOFit": {
+	"id": "github/legolason/PyQSOFit",
+	"title": "github/legolason/PyQSOFit",
+	"url": " https://rseng.github.io/software/repository/github/legolason/PyQSOFit",
+	"content": "A code to fit the spectrum of quasar"
 	},
-	"github/bcbio/bcbio-nextgen": {
-	"id": "github/bcbio/bcbio-nextgen",
-	"title": "github/bcbio/bcbio-nextgen",
-	"url": " https://rseng.github.io/software/repository/github/bcbio/bcbio-nextgen",
-	"content": "Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis"
+	"github/lorenzo-rovigatti/oxDNA": {
+	"id": "github/lorenzo-rovigatti/oxDNA",
+	"title": "github/lorenzo-rovigatti/oxDNA",
+	"url": " https://rseng.github.io/software/repository/github/lorenzo-rovigatti/oxDNA",
+	"content": "A new version of the code to simulate the oxDNA/oxRNA models, now equipped with Python bindings"
 	},
-	"github/lucydot/effmass": {
-	"id": "github/lucydot/effmass",
-	"title": "github/lucydot/effmass",
-	"url": " https://rseng.github.io/software/repository/github/lucydot/effmass",
-	"content": "Calculates various definitions of effective mass from the electronic bandstructure of a semiconductor."
+	"github/LoganAMorrison/Hazma": {
+	"id": "github/LoganAMorrison/Hazma",
+	"title": "github/LoganAMorrison/Hazma",
+	"url": " https://rseng.github.io/software/repository/github/LoganAMorrison/Hazma",
+	"content": "Python package for computing indirect detection constraints on sub-GeV dark matter."
 	},
-	"github/Jane110111107/IsoTree": {
-	"id": "github/Jane110111107/IsoTree",
-	"title": "github/Jane110111107/IsoTree",
-	"url": " https://rseng.github.io/software/repository/github/Jane110111107/IsoTree",
-	"content": "an efficient de novo trascriptome assembler for RNA-Seq data. It can assemble transcripts from RNA-Seq reads (in fasta format). Unlike most of de novo assembly methods that build de Bruijn graph or splicing graph by connecting k-mers which are sets of overlapping substrings generated from reads, IsoTree constructs splicing graph by connecting reads directly. For each splicing graph, IsoTree applies an iterative scheme of …"
+	"github/LoganAMorrison/blackthorn": {
+	"id": "github/LoganAMorrison/blackthorn",
+	"title": "github/LoganAMorrison/blackthorn",
+	"url": " https://rseng.github.io/software/repository/github/LoganAMorrison/blackthorn",
+	"content": "Project for computing spectra from right-handed neutrino decays"
 	},
-	"github/njcuk9999/apero-drs": {
-	"id": "github/njcuk9999/apero-drs",
-	"title": "github/njcuk9999/apero-drs",
-	"url": " https://rseng.github.io/software/repository/github/njcuk9999/apero-drs",
-	"content": "A PipelinE to Reduce Observations - The DRS for SPIRou (CFHT)"
+	"github/logological/gpp": {
+	"id": "github/logological/gpp",
+	"title": "github/logological/gpp",
+	"url": " https://rseng.github.io/software/repository/github/logological/gpp",
+	"content": "GPP, a generic preprocessor"
 	},
-	"github/YosefLab/scvi-tools": {
-	"id": "github/YosefLab/scvi-tools",
-	"title": "github/YosefLab/scvi-tools",
-	"url": " https://rseng.github.io/software/repository/github/YosefLab/scvi-tools",
-	"content": "Deep probabilistic analysis of single-cell omics data"
+	"github/bayesn/bayesn": {
+	"id": "github/bayesn/bayesn",
+	"title": "github/bayesn/bayesn",
+	"url": " https://rseng.github.io/software/repository/github/bayesn/bayesn",
+	"content": "A numpyro implementation of BayeSN, the optical-NIR SED model for type Ia supernovae"
 	},
-	"github/davek44/Glimmer-MG": {
-	"id": "github/davek44/Glimmer-MG",
-	"title": "github/davek44/Glimmer-MG",
-	"url": " https://rseng.github.io/software/repository/github/davek44/Glimmer-MG",
-	"content": "Gene prediction in metagenomic sequences using Glimmer augmented by phylogenetic classification and clustering"
+	"github/SSDataLab/vetting": {
+	"id": "github/SSDataLab/vetting",
+	"title": "github/SSDataLab/vetting",
+	"url": " https://rseng.github.io/software/repository/github/SSDataLab/vetting",
+	"content": "Simple, stand-alone tools for vetting transit signals in Kepler, K2 and TESS data"
 	},
-	"github/LINNAE-project/SFB-Annotator": {
-	"id": "github/LINNAE-project/SFB-Annotator",
-	"title": "github/LINNAE-project/SFB-Annotator",
-	"url": " https://rseng.github.io/software/repository/github/LINNAE-project/SFB-Annotator",
-	"content": "This web app is intended for demo purposes only!"
+	"github/SSDataLab/psfmachine": {
+	"id": "github/SSDataLab/psfmachine",
+	"title": "github/SSDataLab/psfmachine",
+	"url": " https://rseng.github.io/software/repository/github/SSDataLab/psfmachine",
+	"content": "Tool kit for doing PSF photometry"
 	},
-	"github/fkeruzore/panco2": {
-	"id": "github/fkeruzore/panco2",
-	"title": "github/fkeruzore/panco2",
-	"url": " https://rseng.github.io/software/repository/github/fkeruzore/panco2",
-	"content": "A Python library for pressure profile measurements in SZ observations of galaxy clusters."
+	"github/icbm-iupui/STAFF": {
+	"id": "github/icbm-iupui/STAFF",
+	"title": "github/icbm-iupui/STAFF",
+	"url": " https://rseng.github.io/software/repository/github/icbm-iupui/STAFF",
+	"content": "None"
 	},
-	"github/hanyk/BayeSED3": {
-	"id": "github/hanyk/BayeSED3",
-	"title": "github/hanyk/BayeSED3",
-	"url": " https://rseng.github.io/software/repository/github/hanyk/BayeSED3",
-	"content": "A code for Bayesian SED synthesis and analysis of galaxies and AGNs"
+	"github/rhayes777/PyAutoFit": {
+	"id": "github/rhayes777/PyAutoFit",
+	"title": "github/rhayes777/PyAutoFit",
+	"url": " https://rseng.github.io/software/repository/github/rhayes777/PyAutoFit",
+	"content": "None"
 	},
-	"github/wouterpeere/GHEtool": {
-	"id": "github/wouterpeere/GHEtool",
-	"title": "github/wouterpeere/GHEtool",
-	"url": " https://rseng.github.io/software/repository/github/wouterpeere/GHEtool",
-	"content": "GHEtool is an open-source tool for borefield sizing and ground temperature evolution plotting."
+	"github/kritiyer/AngioNet": {
+	"id": "github/kritiyer/AngioNet",
+	"title": "github/kritiyer/AngioNet",
+	"url": " https://rseng.github.io/software/repository/github/kritiyer/AngioNet",
+	"content": "Semantic segmentation network for X-ray angiography images, based on Deeplabv3+"
 	},
-	"github/davidemms/OrthoFinder": {
-	"id": "github/davidemms/OrthoFinder",
-	"title": "github/davidemms/OrthoFinder",
-	"url": " https://rseng.github.io/software/repository/github/davidemms/OrthoFinder",
-	"content": "Phylogenetic orthology inference for comparative genomics"
+	"github/ruta-k/uGMRT-pipeline": {
+	"id": "github/ruta-k/uGMRT-pipeline",
+	"title": "github/ruta-k/uGMRT-pipeline",
+	"url": " https://rseng.github.io/software/repository/github/ruta-k/uGMRT-pipeline",
+	"content": "None"
 	},
-	"github/ADAH-EviDENce/evidence": {
-	"id": "github/ADAH-EviDENce/evidence",
-	"title": "github/ADAH-EviDENce/evidence",
-	"url": " https://rseng.github.io/software/repository/github/ADAH-EviDENce/evidence",
-	"content": "doc2vec-based assisted close reading with support for abstract concept-based search and context-based search"
+	"github/Lbalkenhol/candl": {
+	"id": "github/Lbalkenhol/candl",
+	"title": "github/Lbalkenhol/candl",
+	"url": " https://rseng.github.io/software/repository/github/Lbalkenhol/candl",
+	"content": "Differentiable Likelihood for CMB Analysis"
 	},
-	"github/CEA-MetroCarac/pystack3d": {
-	"id": "github/CEA-MetroCarac/pystack3d",
-	"title": "github/CEA-MetroCarac/pystack3d",
-	"url": " https://rseng.github.io/software/repository/github/CEA-MetroCarac/pystack3d",
-	"content": "Package to process images stacks (typically from 3D FIB-SEM)"
+	"github/joacoh/wise2mbh": {
+	"id": "github/joacoh/wise2mbh",
+	"title": "github/joacoh/wise2mbh",
+	"url": " https://rseng.github.io/software/repository/github/joacoh/wise2mbh",
+	"content": "WISE2MBH is a simple an effective algorithm that uses infrared cataloged data from the Wide-field Infrared Survey Explorer (WISE) to estimate the mass of super massive black holes (SMBH)"
 	},
-	"github/CEA-MetroCarac/fitspy": {
-	"id": "github/CEA-MetroCarac/fitspy",
-	"title": "github/CEA-MetroCarac/fitspy",
-	"url": " https://rseng.github.io/software/repository/github/CEA-MetroCarac/fitspy",
-	"content": "Generic tool dedicated to fit spectra in python "
+	"github/CSi-Studio/G-Aligner": {
+	"id": "github/CSi-Studio/G-Aligner",
+	"title": "github/CSi-Studio/G-Aligner",
+	"url": " https://rseng.github.io/software/repository/github/CSi-Studio/G-Aligner",
+	"content": "G-Aligner: a graph-based feature alignment method for untargeted LC-MS-based metabolomics"
 	},
-	"github/heuermh/dishevelled-bio": {
-	"id": "github/heuermh/dishevelled-bio",
-	"title": "github/heuermh/dishevelled-bio",
-	"url": " https://rseng.github.io/software/repository/github/heuermh/dishevelled-bio",
-	"content": "dishevelled.org bio"
+	"github/BleekerLab/PhenoFeatureFinder": {
+	"id": "github/BleekerLab/PhenoFeatureFinder",
+	"title": "github/BleekerLab/PhenoFeatureFinder",
+	"url": " https://rseng.github.io/software/repository/github/BleekerLab/PhenoFeatureFinder",
+	"content": "A Python package dedicated to identifying plant metabolite features related to insect resistance"
 	},
-	"github/cullanhowlett/l-picola": {
-	"id": "github/cullanhowlett/l-picola",
-	"title": "github/cullanhowlett/l-picola",
-	"url": " https://rseng.github.io/software/repository/github/cullanhowlett/l-picola",
-	"content": "A public repository for the code L-PICOLA"
+	"github/lahovniktadej/gatree": {
+	"id": "github/lahovniktadej/gatree",
+	"title": "github/lahovniktadej/gatree",
+	"url": " https://rseng.github.io/software/repository/github/lahovniktadej/gatree",
+	"content": "Evolutionary decision tree classifier"
 	},
-	"github/benvanwerkhoven/kernel_tuner": {
-	"id": "github/benvanwerkhoven/kernel_tuner",
-	"title": "github/benvanwerkhoven/kernel_tuner",
-	"url": " https://rseng.github.io/software/repository/github/benvanwerkhoven/kernel_tuner",
-	"content": "Kernel Tuner"
+	"github/najoshi/sickle": {
+	"id": "github/najoshi/sickle",
+	"title": "github/najoshi/sickle",
+	"url": " https://rseng.github.io/software/repository/github/najoshi/sickle",
+	"content": "Windowed Adaptive Trimming for fastq files using quality"
 	},
-	"github/jharno/cubep3m": {
-	"id": "github/jharno/cubep3m",
-	"title": "github/jharno/cubep3m",
-	"url": " https://rseng.github.io/software/repository/github/jharno/cubep3m",
-	"content": "cosmological n-body code"
+	"github/tensorflow/tensorflow": {
+	"id": "github/tensorflow/tensorflow",
+	"title": "github/tensorflow/tensorflow",
+	"url": " https://rseng.github.io/software/repository/github/tensorflow/tensorflow",
+	"content": "An Open Source Machine Learning Framework for Everyone"
 	},
-	"github/willvousden/ptemcee": {
-	"id": "github/willvousden/ptemcee",
-	"title": "github/willvousden/ptemcee",
-	"url": " https://rseng.github.io/software/repository/github/willvousden/ptemcee",
-	"content": "A parallel-tempered version of emcee."
+	"github/Romea/romea-ros2-robot-to-world-localisation-core": {
+	"id": "github/Romea/romea-ros2-robot-to-world-localisation-core",
+	"title": "github/Romea/romea-ros2-robot-to-world-localisation-core",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-robot-to-world-localisation-core",
+	"content": "None"
 	},
-	"github/AIgnesti/PT-REX": {
-	"id": "github/AIgnesti/PT-REX",
-	"title": "github/AIgnesti/PT-REX",
-	"url": " https://rseng.github.io/software/repository/github/AIgnesti/PT-REX",
+	"github/Romea/romea-ros2-gps": {
+	"id": "github/Romea/romea-ros2-gps",
+	"title": "github/Romea/romea-ros2-gps",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-gps",
 	"content": "None"
 	},
-	"github/LabLaskin/MSIGen": {
-	"id": "github/LabLaskin/MSIGen",
-	"title": "github/LabLaskin/MSIGen",
-	"url": " https://rseng.github.io/software/repository/github/LabLaskin/MSIGen",
-	"content": "Python package for visualizing MS images from line scans"
+	"github/Romea/alpo": {
+	"id": "github/Romea/alpo",
+	"title": "github/Romea/alpo",
+	"url": " https://rseng.github.io/software/repository/github/Romea/alpo",
+	"content": "None"
 	},
-	"github/Tomcxf/FASTdRNA": {
-	"id": "github/Tomcxf/FASTdRNA",
-	"title": "github/Tomcxf/FASTdRNA",
-	"url": " https://rseng.github.io/software/repository/github/Tomcxf/FASTdRNA",
-	"content": "FASTdRNA is a workflow for analysis of ONT direct RNA seq dataset"
+	"github/Romea/romea-ros2-cmd-mux": {
+	"id": "github/Romea/romea-ros2-cmd-mux",
+	"title": "github/Romea/romea-ros2-cmd-mux",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-cmd-mux",
+	"content": "None"
 	},
-	"github/brandonckelly/carma_pack": {
-	"id": "github/brandonckelly/carma_pack",
-	"title": "github/brandonckelly/carma_pack",
-	"url": " https://rseng.github.io/software/repository/github/brandonckelly/carma_pack",
-	"content": "MCMC Sampler for Performing Bayesian Inference on Continuous Time Autoregressive Models."
+	"github/Romea/romea-ros2-stereo-camera": {
+	"id": "github/Romea/romea-ros2-stereo-camera",
+	"title": "github/Romea/romea-ros2-stereo-camera",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-stereo-camera",
+	"content": "None"
 	},
-	"github/n-claes/legolas": {
-	"id": "github/n-claes/legolas",
-	"title": "github/n-claes/legolas",
-	"url": " https://rseng.github.io/software/repository/github/n-claes/legolas",
-	"content": "Legolas: a modern tool for MHD spectroscopy"
+	"github/Romea/romea-core-filtering": {
+	"id": "github/Romea/romea-core-filtering",
+	"title": "github/Romea/romea-core-filtering",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-core-filtering",
+	"content": "None"
 	},
-	"github/an0wen/MARDIGRAS": {
-	"id": "github/an0wen/MARDIGRAS",
-	"title": "github/an0wen/MARDIGRAS",
-	"url": " https://rseng.github.io/software/repository/github/an0wen/MARDIGRAS",
-	"content": "MAss-Radius DIaGRAm with Sliders"
+	"github/Romea/romea-ros2-rgbd-camera": {
+	"id": "github/Romea/romea-ros2-rgbd-camera",
+	"title": "github/Romea/romea-ros2-rgbd-camera",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-rgbd-camera",
+	"content": "None"
 	},
-	"github/bruce-chappell/SunnyNet": {
-	"id": "github/bruce-chappell/SunnyNet",
-	"title": "github/bruce-chappell/SunnyNet",
-	"url": " https://rseng.github.io/software/repository/github/bruce-chappell/SunnyNet",
-	"content": "Repository for SunnyNet network"
+	"github/Romea/romea-ros2-robot-to-world-localisation-rtls-plugin": {
+	"id": "github/Romea/romea-ros2-robot-to-world-localisation-rtls-plugin",
+	"title": "github/Romea/romea-ros2-robot-to-world-localisation-rtls-plugin",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-robot-to-world-localisation-rtls-plugin",
+	"content": "None"
 	},
-	"github/OncoRNALab/CiLiQuant": {
-	"id": "github/OncoRNALab/CiLiQuant",
-	"title": "github/OncoRNALab/CiLiQuant",
-	"url": " https://rseng.github.io/software/repository/github/OncoRNALab/CiLiQuant",
+	"github/Romea/romea-core-rtls": {
+	"id": "github/Romea/romea-core-rtls",
+	"title": "github/Romea/romea-core-rtls",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-core-rtls",
 	"content": "None"
 	},
-	"github/longfei8533/SDC": {
-	"id": "github/longfei8533/SDC",
-	"title": "github/longfei8533/SDC",
-	"url": " https://rseng.github.io/software/repository/github/longfei8533/SDC",
-	"content": "Sex Differences in Cancer"
+	"github/Romea/romea-ros2-camera": {
+	"id": "github/Romea/romea-ros2-camera",
+	"title": "github/Romea/romea-ros2-camera",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-camera",
+	"content": "None"
 	},
-	"github/KolmogorovLab/Severus": {
-	"id": "github/KolmogorovLab/Severus",
-	"title": "github/KolmogorovLab/Severus",
-	"url": " https://rseng.github.io/software/repository/github/KolmogorovLab/Severus",
-	"content": "A tool for somatic structural variant calling using long reads"
+	"github/Romea/romea-ros2-localisation-utils": {
+	"id": "github/Romea/romea-ros2-localisation-utils",
+	"title": "github/Romea/romea-ros2-localisation-utils",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-localisation-utils",
+	"content": "None"
 	},
-	"github/liuhong-jia/scAnno": {
-	"id": "github/liuhong-jia/scAnno",
-	"title": "github/liuhong-jia/scAnno",
-	"url": " https://rseng.github.io/software/repository/github/liuhong-jia/scAnno",
+	"github/Romea/aroco": {
+	"id": "github/Romea/aroco",
+	"title": "github/Romea/aroco",
+	"url": " https://rseng.github.io/software/repository/github/Romea/aroco",
 	"content": "None"
 	},
-	"github/USU-Analytics-Solution-Center/Bruno.jl": {
-	"id": "github/USU-Analytics-Solution-Center/Bruno.jl",
-	"title": "github/USU-Analytics-Solution-Center/Bruno.jl",
-	"url": " https://rseng.github.io/software/repository/github/USU-Analytics-Solution-Center/Bruno.jl",
-	"content": "Repository for the Julia package with financial tools for data generation, asset pricing and strategy testing"
+	"github/Romea/romea-ros2-robot-to-robot-localisation-core": {
+	"id": "github/Romea/romea-ros2-robot-to-robot-localisation-core",
+	"title": "github/Romea/romea-ros2-robot-to-robot-localisation-core",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-robot-to-robot-localisation-core",
+	"content": "None"
 	},
-	"github/MADHATdm/MADHAT": {
-	"id": "github/MADHATdm/MADHAT",
-	"title": "github/MADHATdm/MADHAT",
-	"url": " https://rseng.github.io/software/repository/github/MADHATdm/MADHAT",
-	"content": "Model-Agnostic Dark Halo Analysis Tool"
+	"github/Romea/romea-ros2-robot-to-robot-localisation-rtls-plugin": {
+	"id": "github/Romea/romea-ros2-robot-to-robot-localisation-rtls-plugin",
+	"title": "github/Romea/romea-ros2-robot-to-robot-localisation-rtls-plugin",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-robot-to-robot-localisation-rtls-plugin",
+	"content": "None"
 	},
-	"github/radifar/PyPLIF-HIPPOS": {
-	"id": "github/radifar/PyPLIF-HIPPOS",
-	"title": "github/radifar/PyPLIF-HIPPOS",
-	"url": " https://rseng.github.io/software/repository/github/radifar/PyPLIF-HIPPOS",
-	"content": "HIPPOS Is PyPLIF On Steroids. A Molecular Interaction Fingerprinting Tool for Docking Results of Autodock Vina and PLANTS"
+	"github/Romea/romea-ros2-imu": {
+	"id": "github/Romea/romea-ros2-imu",
+	"title": "github/Romea/romea-ros2-imu",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-imu",
+	"content": "None"
 	},
-	"github/AstroUGent/shadowfax": {
-	"id": "github/AstroUGent/shadowfax",
-	"title": "github/AstroUGent/shadowfax",
-	"url": " https://rseng.github.io/software/repository/github/AstroUGent/shadowfax",
-	"content": "A public moving mesh hydrodynamical integration code, including gravity and a collisionless component."
+	"github/Romea/hunter": {
+	"id": "github/Romea/hunter",
+	"title": "github/Romea/hunter",
+	"url": " https://rseng.github.io/software/repository/github/Romea/hunter",
+	"content": "None"
 	},
-	"github/glenco/lensed": {
-	"id": "github/glenco/lensed",
-	"title": "github/glenco/lensed",
-	"url": " https://rseng.github.io/software/repository/github/glenco/lensed",
-	"content": "forward reconstruction of lenses and sources from strong lensing observations"
+	"github/Romea/romea-core-path": {
+	"id": "github/Romea/romea-core-path",
+	"title": "github/Romea/romea-core-path",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-core-path",
+	"content": "None"
 	},
-	"github/xiaochuanle/MECAT2": {
-	"id": "github/xiaochuanle/MECAT2",
-	"title": "github/xiaochuanle/MECAT2",
-	"url": " https://rseng.github.io/software/repository/github/xiaochuanle/MECAT2",
-	"content": "ultra-fast and accurate de novo assembly tools for SMRT reads"
+	"github/Romea/romea-ros2-joy": {
+	"id": "github/Romea/romea-ros2-joy",
+	"title": "github/Romea/romea-ros2-joy",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-joy",
+	"content": "None"
 	},
-	"github/elkebir-group/derna": {
-	"id": "github/elkebir-group/derna",
-	"title": "github/elkebir-group/derna",
-	"url": " https://rseng.github.io/software/repository/github/elkebir-group/derna",
-	"content": "RNA sequence design for a target protein sequence"
+	"github/Romea/romea-core-localisation-gps": {
+	"id": "github/Romea/romea-core-localisation-gps",
+	"title": "github/Romea/romea-core-localisation-gps",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-core-localisation-gps",
+	"content": "None"
 	},
-	"github/elkebir-group/Jumper": {
-	"id": "github/elkebir-group/Jumper",
-	"title": "github/elkebir-group/Jumper",
-	"url": " https://rseng.github.io/software/repository/github/elkebir-group/Jumper",
-	"content": "Discontinuous Transcript Assembly in Nidovirales"
+	"github/Romea/cinteo": {
+	"id": "github/Romea/cinteo",
+	"title": "github/Romea/cinteo",
+	"url": " https://rseng.github.io/software/repository/github/Romea/cinteo",
+	"content": "None"
 	},
-	"github/qutip/qutip": {
-	"id": "github/qutip/qutip",
-	"title": "github/qutip/qutip",
-	"url": " https://rseng.github.io/software/repository/github/qutip/qutip",
-	"content": "QuTiP: Quantum Toolbox in Python"
+	"github/Romea/romea-ros2-robot-to-human-localisation-rtls-plugin": {
+	"id": "github/Romea/romea-ros2-robot-to-human-localisation-rtls-plugin",
+	"title": "github/Romea/romea-ros2-robot-to-human-localisation-rtls-plugin",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-robot-to-human-localisation-rtls-plugin",
+	"content": "None"
 	},
-	"github/shenwei356/unikmer": {
-	"id": "github/shenwei356/unikmer",
-	"title": "github/shenwei356/unikmer",
-	"url": " https://rseng.github.io/software/repository/github/shenwei356/unikmer",
-	"content": "Toolkit for k-mer with taxonomic information"
+	"github/Romea/romea-core-common": {
+	"id": "github/Romea/romea-core-common",
+	"title": "github/Romea/romea-core-common",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-core-common",
+	"content": "None"
 	},
-	"github/shenwei356/csvtk": {
-	"id": "github/shenwei356/csvtk",
-	"title": "github/shenwei356/csvtk",
-	"url": " https://rseng.github.io/software/repository/github/shenwei356/csvtk",
-	"content": "a set of tools for manipulation of CSV/TSV files. It is convenient for rapid data investigation and integration into analysis pipelines."
+	"github/Romea/romea-core-gps": {
+	"id": "github/Romea/romea-core-gps",
+	"title": "github/Romea/romea-core-gps",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-core-gps",
+	"content": "None"
 	},
-	"github/shenwei356/kmcp": {
-	"id": "github/shenwei356/kmcp",
-	"title": "github/shenwei356/kmcp",
-	"url": " https://rseng.github.io/software/repository/github/shenwei356/kmcp",
-	"content": "Accurate metagenomic profiling &amp;&amp; Fast large-scale sequence/genome searching"
+	"github/Romea/robucar": {
+	"id": "github/Romea/robucar",
+	"title": "github/Romea/robucar",
+	"url": " https://rseng.github.io/software/repository/github/Romea/robucar",
+	"content": "None"
 	},
-	"github/shenwei356/seqkit": {
-	"id": "github/shenwei356/seqkit",
-	"title": "github/shenwei356/seqkit",
-	"url": " https://rseng.github.io/software/repository/github/shenwei356/seqkit",
-	"content": "A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang"
+	"github/Romea/romea-core-imu": {
+	"id": "github/Romea/romea-core-imu",
+	"title": "github/Romea/romea-core-imu",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-core-imu",
+	"content": "None"
 	},
-	"github/zkdtc/MLC_ELGs": {
-	"id": "github/zkdtc/MLC_ELGs",
-	"title": "github/zkdtc/MLC_ELGs",
-	"url": " https://rseng.github.io/software/repository/github/zkdtc/MLC_ELGs",
-	"content": "Machine Learning Classifiers for intermediate redshift Emission Line Galaxies"
+	"github/Romea/scout": {
+	"id": "github/Romea/scout",
+	"title": "github/Romea/scout",
+	"url": " https://rseng.github.io/software/repository/github/Romea/scout",
+	"content": "None"
 	},
-	"github/UM-Bridge/umbridge": {
-	"id": "github/UM-Bridge/umbridge",
-	"title": "github/UM-Bridge/umbridge",
-	"url": " https://rseng.github.io/software/repository/github/UM-Bridge/umbridge",
+	"github/Romea/husky": {
+	"id": "github/Romea/husky",
+	"title": "github/Romea/husky",
+	"url": " https://rseng.github.io/software/repository/github/Romea/husky",
 	"content": "None"
 	},
-	"github/JulioHC00/PEPITA": {
-	"id": "github/JulioHC00/PEPITA",
-	"title": "github/JulioHC00/PEPITA",
-	"url": " https://rseng.github.io/software/repository/github/JulioHC00/PEPITA",
-	"content": "Prediction of Exoplanet Precisions using Information in Transit Analysis"
+	"github/Romea/romea-ros2-mobile-base": {
+	"id": "github/Romea/romea-ros2-mobile-base",
+	"title": "github/Romea/romea-ros2-mobile-base",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-mobile-base",
+	"content": "None"
 	},
-	"github/Ouranosinc/xclim": {
-	"id": "github/Ouranosinc/xclim",
-	"title": "github/Ouranosinc/xclim",
-	"url": " https://rseng.github.io/software/repository/github/Ouranosinc/xclim",
-	"content": "Library of derived climate variables, ie climate indicators, based on xarray. "
+	"github/Romea/romea-ros2-robot-to-human-localisation-core": {
+	"id": "github/Romea/romea-ros2-robot-to-human-localisation-core",
+	"title": "github/Romea/romea-ros2-robot-to-human-localisation-core",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-robot-to-human-localisation-core",
+	"content": "None"
 	},
-	"github/cy-xu/cosmic-conn": {
-	"id": "github/cy-xu/cosmic-conn",
-	"title": "github/cy-xu/cosmic-conn",
-	"url": " https://rseng.github.io/software/repository/github/cy-xu/cosmic-conn",
-	"content": "Cosmic-CoNN: A Cosmic Ray Detection Deep-Learning Framework, Dataset, and Toolkit"
+	"github/Romea/romea-ros2-teleop": {
+	"id": "github/Romea/romea-ros2-teleop",
+	"title": "github/Romea/romea-ros2-teleop",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-teleop",
+	"content": "None"
 	},
-	"github/tidymess-code/tidymess": {
-	"id": "github/tidymess-code/tidymess",
-	"title": "github/tidymess-code/tidymess",
-	"url": " https://rseng.github.io/software/repository/github/tidymess-code/tidymess",
-	"content": "Tidal Dynamics of Multi-body ExtraSolar Systems"
+	"github/Romea/adap2e": {
+	"id": "github/Romea/adap2e",
+	"title": "github/Romea/adap2e",
+	"url": " https://rseng.github.io/software/repository/github/Romea/adap2e",
+	"content": "None"
 	},
-	"github/beckermr/calclens": {
-	"id": "github/beckermr/calclens",
-	"title": "github/beckermr/calclens",
-	"url": " https://rseng.github.io/software/repository/github/beckermr/calclens",
-	"content": "Curved-sky grAvitational Lensing for Cosmological Light conE simulatioNS"
+	"github/Romea/romea-ros2-lidar": {
+	"id": "github/Romea/romea-ros2-lidar",
+	"title": "github/Romea/romea-ros2-lidar",
+	"url": " https://rseng.github.io/software/repository/github/Romea/romea-ros2-lidar",
+	"content": "None"
 	},
-	"github/CHRF-Genomics/Paratype": {
-	"id": "github/CHRF-Genomics/Paratype",
-	"title": "github/CHRF-Genomics/Paratype",
-	"url": " https://rseng.github.io/software/repository/github/CHRF-Genomics/Paratype",
-	"content": "Assign genotypes to Salmonella Paratyphi A isolates using their whole-genome data."
+	"github/DirectDM/directdm-mma": {
+	"id": "github/DirectDM/directdm-mma",
+	"title": "github/DirectDM/directdm-mma",
+	"url": " https://rseng.github.io/software/repository/github/DirectDM/directdm-mma",
+	"content": "DirectDM Mathematica package"
 	},
-	"github/AlanRace/imzMLConverter": {
-	"id": "github/AlanRace/imzMLConverter",
-	"title": "github/AlanRace/imzMLConverter",
-	"url": " https://rseng.github.io/software/repository/github/AlanRace/imzMLConverter",
-	"content": "Tool for converting mass spectrometry data to the imzML format."
+	"github/DirectDM/directdm-py": {
+	"id": "github/DirectDM/directdm-py",
+	"title": "github/DirectDM/directdm-py",
+	"url": " https://rseng.github.io/software/repository/github/DirectDM/directdm-py",
+	"content": "Python version of the DirectDM package"
 	},
-	"github/haowang-astro/jetsimpy": {
-	"id": "github/haowang-astro/jetsimpy",
-	"title": "github/haowang-astro/jetsimpy",
-	"url": " https://rseng.github.io/software/repository/github/haowang-astro/jetsimpy",
-	"content": "A hydrodynamic model of gamma-ray burst jet and afterglow"
+	"github/cgrudz/DataAssimilationBenchmarks.jl": {
+	"id": "github/cgrudz/DataAssimilationBenchmarks.jl",
+	"title": "github/cgrudz/DataAssimilationBenchmarks.jl",
+	"url": " https://rseng.github.io/software/repository/github/cgrudz/DataAssimilationBenchmarks.jl",
+	"content": "Package Information and Documentation"
 	},
-	"github/ICRAR/ProFit": {
-	"id": "github/ICRAR/ProFit",
-	"title": "github/ICRAR/ProFit",
-	"url": " https://rseng.github.io/software/repository/github/ICRAR/ProFit",
-	"content": "ProFit is a galaxy image bulge-disk decomposition program"
+	"github/volkamerlab/opencadd": {
+	"id": "github/volkamerlab/opencadd",
+	"title": "github/volkamerlab/opencadd",
+	"url": " https://rseng.github.io/software/repository/github/volkamerlab/opencadd",
+	"content": "A Python library for structural cheminformatics"
 	},
-	"github/ICRAR/libprofit": {
-	"id": "github/ICRAR/libprofit",
-	"title": "github/ICRAR/libprofit",
-	"url": " https://rseng.github.io/software/repository/github/ICRAR/libprofit",
-	"content": "A C++ library that produces images based on different luminosity profiles"
+	"github/laurazara/IgIDivA": {
+	"id": "github/laurazara/IgIDivA",
+	"title": "github/laurazara/IgIDivA",
+	"url": " https://rseng.github.io/software/repository/github/laurazara/IgIDivA",
+	"content": "None"
 	},
-	"github/ICRAR/shark": {
-	"id": "github/ICRAR/shark",
-	"title": "github/ICRAR/shark",
-	"url": " https://rseng.github.io/software/repository/github/ICRAR/shark",
+	"github/milicolazo/Pyedra": {
+	"id": "github/milicolazo/Pyedra",
+	"title": "github/milicolazo/Pyedra",
+	"url": " https://rseng.github.io/software/repository/github/milicolazo/Pyedra",
 	"content": "None"
 	},
-	"github/matsen/pplacer": {
-	"id": "github/matsen/pplacer",
-	"title": "github/matsen/pplacer",
-	"url": " https://rseng.github.io/software/repository/github/matsen/pplacer",
-	"content": "Phylogenetic placement and downstream analysis"
+	"github/rferdman/afr": {
+	"id": "github/rferdman/afr",
+	"title": "github/rferdman/afr",
+	"url": " https://rseng.github.io/software/repository/github/rferdman/afr",
+	"content": "Software package that includes various routines and tools allowing the user to reduce, process, and manipulate pulsar data, and create times-of-arrival compatible with tempo and tempo2 timing software. "
 	},
-	"github/sheydenreich/threepoint": {
-	"id": "github/sheydenreich/threepoint",
-	"title": "github/sheydenreich/threepoint",
-	"url": " https://rseng.github.io/software/repository/github/sheydenreich/threepoint",
-	"content": "None"
+	"github/BradGreig/21CMMC": {
+	"id": "github/BradGreig/21CMMC",
+	"title": "github/BradGreig/21CMMC",
+	"url": " https://rseng.github.io/software/repository/github/BradGreig/21CMMC",
+	"content": "A parallelised, Monte Carlo Markov Chain analysis tool for the epoch of reionisation (EoR)"
 	},
-	"github/htjb/maxsmooth": {
-	"id": "github/htjb/maxsmooth",
-	"title": "github/htjb/maxsmooth",
-	"url": " https://rseng.github.io/software/repository/github/htjb/maxsmooth",
-	"content": "Constrained Derivative Function Optimisation"
+	"github/Leo-Simpson/c-lasso": {
+	"id": "github/Leo-Simpson/c-lasso",
+	"title": "github/Leo-Simpson/c-lasso",
+	"url": " https://rseng.github.io/software/repository/github/Leo-Simpson/c-lasso",
+	"content": "c-lasso: a Python package for constrained sparse regression and classification"
 	},
-	"github/htjb/margarine": {
-	"id": "github/htjb/margarine",
-	"title": "github/htjb/margarine",
-	"url": " https://rseng.github.io/software/repository/github/htjb/margarine",
-	"content": "Code to replicate posterior probability distributions with bijectors/KDEs and perform marginal KL/bayesian dimensionality calculations."
+	"github/tkonolige/city2ba": {
+	"id": "github/tkonolige/city2ba",
+	"title": "github/tkonolige/city2ba",
+	"url": " https://rseng.github.io/software/repository/github/tkonolige/city2ba",
+	"content": "Tools for generating synthetic bundle adjustment datasets"
 	},
-	"github/htjb/globalemu": {
-	"id": "github/htjb/globalemu",
-	"title": "github/htjb/globalemu",
-	"url": " https://rseng.github.io/software/repository/github/htjb/globalemu",
-	"content": "Robust and fast global (sky-averaged) 21-cm signal emulation"
+	"github/wchenastro/Mosaic": {
+	"id": "github/wchenastro/Mosaic",
+	"title": "github/wchenastro/Mosaic",
+	"url": " https://rseng.github.io/software/repository/github/wchenastro/Mosaic",
+	"content": "None"
 	},
-	"github/GOBLIN-Proj/goblin_lite": {
-	"id": "github/GOBLIN-Proj/goblin_lite",
-	"title": "github/GOBLIN-Proj/goblin_lite",
-	"url": " https://rseng.github.io/software/repository/github/GOBLIN-Proj/goblin_lite",
-	"content": "A goblin tool for the generation of static land balance scenarios and environment"
+	"github/UcarLab/AMULET": {
+	"id": "github/UcarLab/AMULET",
+	"title": "github/UcarLab/AMULET",
+	"url": " https://rseng.github.io/software/repository/github/UcarLab/AMULET",
+	"content": "A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data."
 	},
-	"github/benallard/galileo": {
-	"id": "github/benallard/galileo",
-	"title": "github/benallard/galileo",
-	"url": " https://rseng.github.io/software/repository/github/benallard/galileo",
-	"content": "Utility to securely synchronize a Fitbit device with the Fitbit web service"
+	"github/JuliaAI/Imbalance.jl": {
+	"id": "github/JuliaAI/Imbalance.jl",
+	"title": "github/JuliaAI/Imbalance.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaAI/Imbalance.jl",
+	"content": "A Julia toolbox with resampling methods to correct for class imbalance."
 	},
-	"github/bluesky/bluesky": {
-	"id": "github/bluesky/bluesky",
-	"title": "github/bluesky/bluesky",
-	"url": " https://rseng.github.io/software/repository/github/bluesky/bluesky",
-	"content": "experiment orchestration and data acquisition"
+	"github/aabdurrouf/piXedfit": {
+	"id": "github/aabdurrouf/piXedfit",
+	"title": "github/aabdurrouf/piXedfit",
+	"url": " https://rseng.github.io/software/repository/github/aabdurrouf/piXedfit",
+	"content": "piXedfit is a Python package designed for analyzing spatially resolved SEDs of galaxies  "
 	},
-	"github/TRACER-LULab/Hyperelastics.jl": {
-	"id": "github/TRACER-LULab/Hyperelastics.jl",
-	"title": "github/TRACER-LULab/Hyperelastics.jl",
-	"url": " https://rseng.github.io/software/repository/github/TRACER-LULab/Hyperelastics.jl",
-	"content": "Hyperelastic Material modelling with support for Automatic Differentiation"
+	"github/mikekatz04/BOWIE": {
+	"id": "github/mikekatz04/BOWIE",
+	"title": "github/mikekatz04/BOWIE",
+	"url": " https://rseng.github.io/software/repository/github/mikekatz04/BOWIE",
+	"content": "BOWIE - Binary Observability With Illustrative Exploration"
 	},
-	"github/pscicluna/precision": {
-	"id": "github/pscicluna/precision",
-	"title": "github/pscicluna/precision",
-	"url": " https://rseng.github.io/software/repository/github/pscicluna/precision",
-	"content": "A python pipeline to reduce astronomical IR imaging data. Written with SPHERE data in mind, it provides a fast and easy reduction of bright sources suitable for science. While it may not extract the absolute maximum amount of science, the objective is to provide a means to get science-ready data with minimal computing time or human interaction. Development is ongoing."
+	"github/shandley/hecatomb": {
+	"id": "github/shandley/hecatomb",
+	"title": "github/shandley/hecatomb",
+	"url": " https://rseng.github.io/software/repository/github/shandley/hecatomb",
+	"content": "hecatomb is a virome analysis pipeline for analysis of Illumina sequence data"
 	},
-	"github/williamjameshandley/fgivenx": {
-	"id": "github/williamjameshandley/fgivenx",
-	"title": "github/williamjameshandley/fgivenx",
-	"url": " https://rseng.github.io/software/repository/github/williamjameshandley/fgivenx",
-	"content": "Functional Posterior Plotter"
+	"github/taxprofiler/taxpasta": {
+	"id": "github/taxprofiler/taxpasta",
+	"title": "github/taxprofiler/taxpasta",
+	"url": " https://rseng.github.io/software/repository/github/taxprofiler/taxpasta",
+	"content": "TAXnomic Profile Aggregation and STAndardisation"
 	},
-	"github/williamjameshandley/anesthetic": {
-	"id": "github/williamjameshandley/anesthetic",
-	"title": "github/williamjameshandley/anesthetic",
-	"url": " https://rseng.github.io/software/repository/github/williamjameshandley/anesthetic",
-	"content": "Nested Sampling post-processing and plotting"
+	"github/jacksund/simmate": {
+	"id": "github/jacksund/simmate",
+	"title": "github/jacksund/simmate",
+	"url": " https://rseng.github.io/software/repository/github/jacksund/simmate",
+	"content": "The Simulated Materials Ecosystem (Simmate) is a toolbox and framework for computational materials research."
 	},
-	"github/jcolinhill/pyilc": {
-	"id": "github/jcolinhill/pyilc",
-	"title": "github/jcolinhill/pyilc",
-	"url": " https://rseng.github.io/software/repository/github/jcolinhill/pyilc",
-	"content": "Needlet ILC in Python"
+	"github/marberts/piar": {
+	"id": "github/marberts/piar",
+	"title": "github/marberts/piar",
+	"url": " https://rseng.github.io/software/repository/github/marberts/piar",
+	"content": "Price index aggregation in R"
 	},
-	"github/JieweiHuang/Coport": {
-	"id": "github/JieweiHuang/Coport",
-	"title": "github/JieweiHuang/Coport",
-	"url": " https://rseng.github.io/software/repository/github/JieweiHuang/Coport",
-	"content": "A Covariant Polarized Radiative Transfer  Code"
+	"github/cinemascience/cinema_snap": {
+	"id": "github/cinemascience/cinema_snap",
+	"title": "github/cinemascience/cinema_snap",
+	"url": " https://rseng.github.io/software/repository/github/cinemascience/cinema_snap",
+	"content": "React-based web viewer"
 	},
-	"github/NASA-PDS/naif-pds4-bundler": {
-	"id": "github/NASA-PDS/naif-pds4-bundler",
-	"title": "github/NASA-PDS/naif-pds4-bundler",
-	"url": " https://rseng.github.io/software/repository/github/NASA-PDS/naif-pds4-bundler",
-	"content": "Package to generate PDS4 SPICE Kernels Archives"
+	"github/GijsMulders/epos": {
+	"id": "github/GijsMulders/epos",
+	"title": "github/GijsMulders/epos",
+	"url": " https://rseng.github.io/software/repository/github/GijsMulders/epos",
+	"content": "Exoplanet Population Observation Simulator"
 	},
-	"github/ArenA-Crowds/Crowds": {
-	"id": "github/ArenA-Crowds/Crowds",
-	"title": "github/ArenA-Crowds/Crowds",
-	"url": " https://rseng.github.io/software/repository/github/ArenA-Crowds/Crowds",
-	"content": "Jupyter python notebooks related to the ArenA project"
+	"github/zheng-lh/UBER": {
+	"id": "github/zheng-lh/UBER",
+	"title": "github/zheng-lh/UBER",
+	"url": " https://rseng.github.io/software/repository/github/zheng-lh/UBER",
+	"content": "Universal Boltzmann Equation Solver"
 	},
-	"github/oorb/oorb": {
-	"id": "github/oorb/oorb",
-	"title": "github/oorb/oorb",
-	"url": " https://rseng.github.io/software/repository/github/oorb/oorb",
-	"content": "An open-source orbit-computation package for Solar System objects."
+	"github/tamarervin/SolAster": {
+	"id": "github/tamarervin/SolAster",
+	"title": "github/tamarervin/SolAster",
+	"url": " https://rseng.github.io/software/repository/github/tamarervin/SolAster",
+	"content": "Python package to independently derive &#39;Sun-as-a-star&#39; radial velocity variations."
 	},
-	"github/elsner/arkcos": {
-	"id": "github/elsner/arkcos",
-	"title": "github/elsner/arkcos",
-	"url": " https://rseng.github.io/software/repository/github/elsner/arkcos",
-	"content": "Accelerated radial kernel convolution on the sphere"
+	"github/MRCIEU/PHESANT": {
+	"id": "github/MRCIEU/PHESANT",
+	"title": "github/MRCIEU/PHESANT",
+	"url": " https://rseng.github.io/software/repository/github/MRCIEU/PHESANT",
+	"content": "PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank"
 	},
-	"github/vhaasteren/piccard": {
-	"id": "github/vhaasteren/piccard",
-	"title": "github/vhaasteren/piccard",
-	"url": " https://rseng.github.io/software/repository/github/vhaasteren/piccard",
-	"content": "Piccard: pulsar timing data analysis package"
+	"github/MRCIEU/metaboprep": {
+	"id": "github/MRCIEU/metaboprep",
+	"title": "github/MRCIEU/metaboprep",
+	"url": " https://rseng.github.io/software/repository/github/MRCIEU/metaboprep",
+	"content": "a pipeline of metabolomics data processing and quality control"
 	},
-	"github/cmillion/gPhoton": {
-	"id": "github/cmillion/gPhoton",
-	"title": "github/cmillion/gPhoton",
-	"url": " https://rseng.github.io/software/repository/github/cmillion/gPhoton",
-	"content": "The GALEX photon database and tools project."
+	"github/aimalz/qp": {
+	"id": "github/aimalz/qp",
+	"title": "github/aimalz/qp",
+	"url": " https://rseng.github.io/software/repository/github/aimalz/qp",
+	"content": "Quantile Parametrization for probability distribution functions module"
 	},
-	"github/jls713/tact": {
-	"id": "github/jls713/tact",
-	"title": "github/jls713/tact",
-	"url": " https://rseng.github.io/software/repository/github/jls713/tact",
-	"content": "action, angle and frequency estimation using various methods"
+	"github/inrae/RCaNmodel": {
+	"id": "github/inrae/RCaNmodel",
+	"title": "github/inrae/RCaNmodel",
+	"url": " https://rseng.github.io/software/repository/github/inrae/RCaNmodel",
+	"content": "repository for RCaN and RCaNconstructor"
 	},
-	"github/enthought/mayavi": {
-	"id": "github/enthought/mayavi",
-	"title": "github/enthought/mayavi",
-	"url": " https://rseng.github.io/software/repository/github/enthought/mayavi",
-	"content": "3D visualization of scientific data in Python"
+	"github/paulmorio/gincco": {
+	"id": "github/paulmorio/gincco",
+	"title": "github/paulmorio/gincco",
+	"url": " https://rseng.github.io/software/repository/github/paulmorio/gincco",
+	"content": "Source code for GINCCo Paper"
 	},
-	"github/enthought/vpsearch": {
-	"id": "github/enthought/vpsearch",
-	"title": "github/enthought/vpsearch",
-	"url": " https://rseng.github.io/software/repository/github/enthought/vpsearch",
-	"content": "Fast similarity search for genomic sequences via vantage-point trees"
+	"github/snad-space/coniferest": {
+	"id": "github/snad-space/coniferest",
+	"title": "github/snad-space/coniferest",
+	"url": " https://rseng.github.io/software/repository/github/snad-space/coniferest",
+	"content": "None"
 	},
-	"github/max-little/GRAPL": {
-	"id": "github/max-little/GRAPL",
-	"title": "github/max-little/GRAPL",
-	"url": " https://rseng.github.io/software/repository/github/max-little/GRAPL",
-	"content": "GRAPL: A computational library for nonparametric structural causal modelling, analysis and inference"
+	"github/snad-space/zwad": {
+	"id": "github/snad-space/zwad",
+	"title": "github/snad-space/zwad",
+	"url": " https://rseng.github.io/software/repository/github/snad-space/zwad",
+	"content": "ZTF anomaly detection"
 	},
-	"github/meixichen/SpatialGEV": {
-	"id": "github/meixichen/SpatialGEV",
-	"title": "github/meixichen/SpatialGEV",
-	"url": " https://rseng.github.io/software/repository/github/meixichen/SpatialGEV",
-	"content": "An efficient computational method for fitting spatial extreme value models"
+	"github/snad-space/ztf-viewer": {
+	"id": "github/snad-space/ztf-viewer",
+	"title": "github/snad-space/ztf-viewer",
+	"url": " https://rseng.github.io/software/repository/github/snad-space/ztf-viewer",
+	"content": "ZTF data releases light curve viewer"
 	},
-	"github/mslonina/Mechanic": {
-	"id": "github/mslonina/Mechanic",
-	"title": "github/mslonina/Mechanic",
-	"url": " https://rseng.github.io/software/repository/github/mslonina/Mechanic",
-	"content": "The MPI/HDF code framework and task management system"
+	"github/SandyYuan/s3PCF": {
+	"id": "github/SandyYuan/s3PCF",
+	"title": "github/SandyYuan/s3PCF",
+	"url": " https://rseng.github.io/software/repository/github/SandyYuan/s3PCF",
+	"content": "squeezed 3PCF package"
 	},
-	"github/dsheward-astro/pynaple": {
-	"id": "github/dsheward-astro/pynaple",
-	"title": "github/dsheward-astro/pynaple",
-	"url": " https://rseng.github.io/software/repository/github/dsheward-astro/pynaple",
-	"content": "Python NAC Automated Pair Lunar Evaluator"
+	"github/SandyYuan/GRAND-HOD": {
+	"id": "github/SandyYuan/GRAND-HOD",
+	"title": "github/SandyYuan/GRAND-HOD",
+	"url": " https://rseng.github.io/software/repository/github/SandyYuan/GRAND-HOD",
+	"content": "A decorated HOD code in Python that is differentiable and incorporates various generalizations to the standard HOD."
 	},
-	"github/tudelft3d/3dfier": {
-	"id": "github/tudelft3d/3dfier",
-	"title": "github/tudelft3d/3dfier",
-	"url": " https://rseng.github.io/software/repository/github/tudelft3d/3dfier",
-	"content": "The open-source tool for creating of 3D models"
+	"github/ahoward-cf/ppmap": {
+	"id": "github/ahoward-cf/ppmap",
+	"title": "github/ahoward-cf/ppmap",
+	"url": " https://rseng.github.io/software/repository/github/ahoward-cf/ppmap",
+	"content": "Code for column density mapping with extra dimensions (temperature and dust opacity index)."
 	},
-	"github/shilpagarg/WHdenovo": {
-	"id": "github/shilpagarg/WHdenovo",
-	"title": "github/shilpagarg/WHdenovo",
-	"url": " https://rseng.github.io/software/repository/github/shilpagarg/WHdenovo",
-	"content": "None"
+	"github/zachetienne/nrpytutorial": {
+	"id": "github/zachetienne/nrpytutorial",
+	"title": "github/zachetienne/nrpytutorial",
+	"url": " https://rseng.github.io/software/repository/github/zachetienne/nrpytutorial",
+	"content": "NRPy+, BlackHoles@Home, SENRv2, and the NRPy+ Jupyter Tutorial: Python-Based Code Generation for Numerical Relativity... and Beyond!"
 	},
-	"github/mpc-bioinformatics/CalibraCurve": {
-	"id": "github/mpc-bioinformatics/CalibraCurve",
-	"title": "github/mpc-bioinformatics/CalibraCurve",
-	"url": " https://rseng.github.io/software/repository/github/mpc-bioinformatics/CalibraCurve",
-	"content": "CalibraCurve"
+	"github/ExObsSim/ExoRad2-public": {
+	"id": "github/ExObsSim/ExoRad2-public",
+	"title": "github/ExObsSim/ExoRad2-public",
+	"url": " https://rseng.github.io/software/repository/github/ExObsSim/ExoRad2-public",
+	"content": "ExoRad, the generic point source radiometric model."
 	},
-	"github/UcarLab/AMULET": {
-	"id": "github/UcarLab/AMULET",
-	"title": "github/UcarLab/AMULET",
-	"url": " https://rseng.github.io/software/repository/github/UcarLab/AMULET",
-	"content": "A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data."
+	"github/sxs-collaboration/spectre": {
+	"id": "github/sxs-collaboration/spectre",
+	"title": "github/sxs-collaboration/spectre",
+	"url": " https://rseng.github.io/software/repository/github/sxs-collaboration/spectre",
+	"content": "SpECTRE is a code for multi-scale, multi-physics problems in astrophysics and gravitational physics."
 	},
-	"github/ReSurfEMG/ReSurfEMG": {
-	"id": "github/ReSurfEMG/ReSurfEMG",
-	"title": "github/ReSurfEMG/ReSurfEMG",
-	"url": " https://rseng.github.io/software/repository/github/ReSurfEMG/ReSurfEMG",
-	"content": "An open source library for analysis of respiratory EMG"
+	"github/sxs-collaboration/gwsurrogate": {
+	"id": "github/sxs-collaboration/gwsurrogate",
+	"title": "github/sxs-collaboration/gwsurrogate",
+	"url": " https://rseng.github.io/software/repository/github/sxs-collaboration/gwsurrogate",
+	"content": "An easy to use interface to gravitational wave surrogate models"
 	},
-	"github/Gaiana/nirdust": {
-	"id": "github/Gaiana/nirdust",
-	"title": "github/Gaiana/nirdust",
-	"url": " https://rseng.github.io/software/repository/github/Gaiana/nirdust",
-	"content": "Nirdust is a python package that uses K-band (2.2 micrometers) spectra to measure the temperature of the dust heated by a type 2 Active Galactic Nuclei (AGN) accretion disk."
+	"github/ericsteinbring/Special-Blurring": {
+	"id": "github/ericsteinbring/Special-Blurring",
+	"title": "github/ericsteinbring/Special-Blurring",
+	"url": " https://rseng.github.io/software/repository/github/ericsteinbring/Special-Blurring",
+	"content": "Calculates the effect of quantum-foam blurring, appropriate for the special gamma-ray burst GRB221009A."
 	},
-	"github/gokalpcelik/ROHMMCLI": {
-	"id": "github/gokalpcelik/ROHMMCLI",
-	"title": "github/gokalpcelik/ROHMMCLI",
-	"url": " https://rseng.github.io/software/repository/github/gokalpcelik/ROHMMCLI",
-	"content": "ROHMMCLI - Flexible HMM based homozygosity predictor."
+	"github/ericsteinbring/World_Observatory": {
+	"id": "github/ericsteinbring/World_Observatory",
+	"title": "github/ericsteinbring/World_Observatory",
+	"url": " https://rseng.github.io/software/repository/github/ericsteinbring/World_Observatory",
+	"content": "World Observatory visualizes S/N-versus-cost tradeoffs for large optical/near-infrared telescopes."
 	},
-	"github/jkluter/MLG": {
-	"id": "github/jkluter/MLG",
-	"title": "github/jkluter/MLG",
-	"url": " https://rseng.github.io/software/repository/github/jkluter/MLG",
-	"content": "Microlensing with Gaia"
+	"github/ferdymercury/amide": {
+	"id": "github/ferdymercury/amide",
+	"title": "github/ferdymercury/amide",
+	"url": " https://rseng.github.io/software/repository/github/ferdymercury/amide",
+	"content": "AMIDE: a Medical Imaging Data Examiner"
 	},
-	"github/sibirrer/hierArc": {
-	"id": "github/sibirrer/hierArc",
-	"title": "github/sibirrer/hierArc",
-	"url": " https://rseng.github.io/software/repository/github/sibirrer/hierArc",
-	"content": "Hierarchical inference of cosmological parameters from a set of strong lensing systems"
+	"github/walaj/svaba": {
+	"id": "github/walaj/svaba",
+	"title": "github/walaj/svaba",
+	"url": " https://rseng.github.io/software/repository/github/walaj/svaba",
+	"content": "Structural variation and indel detection by local assembly"
 	},
-	"github/sibirrer/psfr": {
-	"id": "github/sibirrer/psfr",
-	"title": "github/sibirrer/psfr",
-	"url": " https://rseng.github.io/software/repository/github/sibirrer/psfr",
-	"content": "Point Spread Function reconstruction"
+	"github/walaj/SeqLib": {
+	"id": "github/walaj/SeqLib",
+	"title": "github/walaj/SeqLib",
+	"url": " https://rseng.github.io/software/repository/github/walaj/SeqLib",
+	"content": "C++ htslib/bwa-mem/fermi interface for interrogating sequence data"
 	},
-	"github/sibirrer/lenstronomy": {
-	"id": "github/sibirrer/lenstronomy",
-	"title": "github/sibirrer/lenstronomy",
-	"url": " https://rseng.github.io/software/repository/github/sibirrer/lenstronomy",
-	"content": "multi-purpose lens modeling software package"
+	"github/champsproject/ldds": {
+	"id": "github/champsproject/ldds",
+	"title": "github/champsproject/ldds",
+	"url": " https://rseng.github.io/software/repository/github/champsproject/ldds",
+	"content": "Python package for computing and visualizing Lagrangian Descriptors in Dynamical Systems"
 	},
-	"github/cschreib/egg": {
-	"id": "github/cschreib/egg",
-	"title": "github/cschreib/egg",
-	"url": " https://rseng.github.io/software/repository/github/cschreib/egg",
-	"content": "Tool to generate fake galaxy catalogs with realistic positions, morphologies and fluxes from the far-ultraviolet to the far-infrared."
+	"github/BioSTEAMDevelopmentGroup/thermosteam": {
+	"id": "github/BioSTEAMDevelopmentGroup/thermosteam",
+	"title": "github/BioSTEAMDevelopmentGroup/thermosteam",
+	"url": " https://rseng.github.io/software/repository/github/BioSTEAMDevelopmentGroup/thermosteam",
+	"content": "BioSTEAM&#39;s Premier Thermodynamic Engine"
 	},
-	"github/TORCH-Consortium/MAGMA": {
-	"id": "github/TORCH-Consortium/MAGMA",
-	"title": "github/TORCH-Consortium/MAGMA",
-	"url": " https://rseng.github.io/software/repository/github/TORCH-Consortium/MAGMA",
-	"content": "A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research"
+	"github/bxia888/CEFCIG": {
+	"id": "github/bxia888/CEFCIG",
+	"title": "github/bxia888/CEFCIG",
+	"url": " https://rseng.github.io/software/repository/github/bxia888/CEFCIG",
+	"content": "CEFCIG (Computational Epigenetic Framework for Cell Identity Gene Discovery)"
 	},
-	"github/pni-lab/mlconfound": {
-	"id": "github/pni-lab/mlconfound",
-	"title": "github/pni-lab/mlconfound",
-	"url": " https://rseng.github.io/software/repository/github/pni-lab/mlconfound",
-	"content": "Tools for analyzing and quantifying effects of counfounder variables on machine learning model predictions."
+	"github/Ensembl/ensembl-vep": {
+	"id": "github/Ensembl/ensembl-vep",
+	"title": "github/Ensembl/ensembl-vep",
+	"url": " https://rseng.github.io/software/repository/github/Ensembl/ensembl-vep",
+	"content": "The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants"
 	},
-	"github/cdalvaro/machine-learning-master-thesis": {
-	"id": "github/cdalvaro/machine-learning-master-thesis",
-	"title": "github/cdalvaro/machine-learning-master-thesis",
-	"url": " https://rseng.github.io/software/repository/github/cdalvaro/machine-learning-master-thesis",
-	"content": "✨🛰 Machine Learning Tools for Open Cluster Characterization with Gaia DR2 Data"
+	"github/Ensembl/WiggleTools": {
+	"id": "github/Ensembl/WiggleTools",
+	"title": "github/Ensembl/WiggleTools",
+	"url": " https://rseng.github.io/software/repository/github/Ensembl/WiggleTools",
+	"content": "Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency"
 	},
-	"github/HengyueZ/astrofix": {
-	"id": "github/HengyueZ/astrofix",
-	"title": "github/HengyueZ/astrofix",
-	"url": " https://rseng.github.io/software/repository/github/HengyueZ/astrofix",
-	"content": "Correcting Astronomical Bad Pixels in Python"
+	"github/klb2/qmkpy": {
+	"id": "github/klb2/qmkpy",
+	"title": "github/klb2/qmkpy",
+	"url": " https://rseng.github.io/software/repository/github/klb2/qmkpy",
+	"content": "Python testbed for the Quadratic Multiple Knapsack Problem (QMKP)"
 	},
-	"github/CobayaSampler/cobaya": {
-	"id": "github/CobayaSampler/cobaya",
-	"title": "github/CobayaSampler/cobaya",
-	"url": " https://rseng.github.io/software/repository/github/CobayaSampler/cobaya",
-	"content": "Code for Bayesian Analysis"
+	"github/benjaminbolling/RSW": {
+	"id": "github/benjaminbolling/RSW",
+	"title": "github/benjaminbolling/RSW",
+	"url": " https://rseng.github.io/software/repository/github/benjaminbolling/RSW",
+	"content": "A Computational Approach to Generate Multi-Shift Rotational Workforce Schedules."
 	},
-	"github/mtceballos/SIRENAdoc": {
-	"id": "github/mtceballos/SIRENAdoc",
-	"title": "github/mtceballos/SIRENAdoc",
-	"url": " https://rseng.github.io/software/repository/github/mtceballos/SIRENAdoc",
-	"content": "SIRENA documentation"
+	"github/benjaminbolling/DynaGUI": {
+	"id": "github/benjaminbolling/DynaGUI",
+	"title": "github/benjaminbolling/DynaGUI",
+	"url": " https://rseng.github.io/software/repository/github/benjaminbolling/DynaGUI",
+	"content": "A Dynamic Graphical User Interface package, which gives users a method to construct temporary, permanent and/or a set of GUI:s for users in a simple and fast manner combined with diagnostics tools (with advance 1D and 2D plotting methods)."
 	},
-	"github/alex-b-davis/gubas": {
-	"id": "github/alex-b-davis/gubas",
-	"title": "github/alex-b-davis/gubas",
-	"url": " https://rseng.github.io/software/repository/github/alex-b-davis/gubas",
-	"content": "General Use Binary Asteroid Simulator"
+	"github/RangamaniLabUCSD/smart": {
+	"id": "github/RangamaniLabUCSD/smart",
+	"title": "github/RangamaniLabUCSD/smart",
+	"url": " https://rseng.github.io/software/repository/github/RangamaniLabUCSD/smart",
+	"content": "None"
 	},
-	"github/erling6232/imagedata": {
-	"id": "github/erling6232/imagedata",
-	"title": "github/erling6232/imagedata",
-	"url": " https://rseng.github.io/software/repository/github/erling6232/imagedata",
-	"content": "Read/write medical image data"
+	"github/COVID-IWG/epimargin": {
+	"id": "github/COVID-IWG/epimargin",
+	"title": "github/COVID-IWG/epimargin",
+	"url": " https://rseng.github.io/software/repository/github/COVID-IWG/epimargin",
+	"content": "networked, stochastic SIRD epidemiological model with Bayesian parameter estimation and policy scenario comparison tools "
 	},
-	"github/creaneroDIAS/beamModelTester": {
-	"id": "github/creaneroDIAS/beamModelTester",
-	"title": "github/creaneroDIAS/beamModelTester",
-	"url": " https://rseng.github.io/software/repository/github/creaneroDIAS/beamModelTester",
-	"content": "a general-purpose tool for evaluation of models of radio telescope beams."
+	"github/lumen-org/lumen": {
+	"id": "github/lumen-org/lumen",
+	"title": "github/lumen-org/lumen",
+	"url": " https://rseng.github.io/software/repository/github/lumen-org/lumen",
+	"content": "Interactive web application for the exploration, comparision and validation of probability models and its data"
 	},
-	"github/neurogeriatricskiel/NGMT": {
-	"id": "github/neurogeriatricskiel/NGMT",
-	"title": "github/neurogeriatricskiel/NGMT",
-	"url": " https://rseng.github.io/software/repository/github/neurogeriatricskiel/NGMT",
-	"content": "Python based toolbox for processing motion data"
+	"github/nicolet5/DiffCapAnalyzer": {
+	"id": "github/nicolet5/DiffCapAnalyzer",
+	"title": "github/nicolet5/DiffCapAnalyzer",
+	"url": " https://rseng.github.io/software/repository/github/nicolet5/DiffCapAnalyzer",
+	"content": "A tool for quantitative analysis of differential capacity data! "
 	},
-	"github/jydu/physamp": {
-	"id": "github/jydu/physamp",
-	"title": "github/jydu/physamp",
-	"url": " https://rseng.github.io/software/repository/github/jydu/physamp",
-	"content": "Phylogenetic Sampling and Optimization of sequence alignments"
+	"github/muctadir/lama": {
+	"id": "github/muctadir/lama",
+	"title": "github/muctadir/lama",
+	"url": " https://rseng.github.io/software/repository/github/muctadir/lama",
+	"content": "LaMa, short for Labelling Machine, is an web application developed for aiding in thematic analysis of qualitative data. "
 	},
-	"github/jydu/maffilter": {
-	"id": "github/jydu/maffilter",
-	"title": "github/jydu/maffilter",
-	"url": " https://rseng.github.io/software/repository/github/jydu/maffilter",
-	"content": "The MafFilter genome alignment processor"
+	"github/spokenlanguage/platalea": {
+	"id": "github/spokenlanguage/platalea",
+	"title": "github/spokenlanguage/platalea",
+	"url": " https://rseng.github.io/software/repository/github/spokenlanguage/platalea",
+	"content": "Library for training visually-grounded models of spoken language understanding."
 	},
-	"github/ddarriba/prottest3": {
-	"id": "github/ddarriba/prottest3",
-	"title": "github/ddarriba/prottest3",
-	"url": " https://rseng.github.io/software/repository/github/ddarriba/prottest3",
-	"content": "Automatically exported from code.google.com/p/prottest3"
+	"github/mmollina/viewpoly": {
+	"id": "github/mmollina/viewpoly",
+	"title": "github/mmollina/viewpoly",
+	"url": " https://rseng.github.io/software/repository/github/mmollina/viewpoly",
+	"content": "R package to visualize genetic maps and QTL analysis."
 	},
-	"github/mp3guy/ElasticFusion": {
-	"id": "github/mp3guy/ElasticFusion",
-	"title": "github/mp3guy/ElasticFusion",
-	"url": " https://rseng.github.io/software/repository/github/mp3guy/ElasticFusion",
-	"content": "Real-time dense visual SLAM system"
+	"github/Yu606/odyssey": {
+	"id": "github/Yu606/odyssey",
+	"title": "github/Yu606/odyssey",
+	"url": " https://rseng.github.io/software/repository/github/Yu606/odyssey",
+	"content": "None"
 	},
-	"github/marius311/cosmoslik": {
-	"id": "github/marius311/cosmoslik",
-	"title": "github/marius311/cosmoslik",
-	"url": " https://rseng.github.io/software/repository/github/marius311/cosmoslik",
-	"content": "Cosmology Sampler of LIKelihoods"
+	"github/su2code/SU2": {
+	"id": "github/su2code/SU2",
+	"title": "github/su2code/SU2",
+	"url": " https://rseng.github.io/software/repository/github/su2code/SU2",
+	"content": "SU2: An Open-Source Suite for Multiphysics Simulation and Design"
 	},
-	"github/marius311/pypico": {
-	"id": "github/marius311/pypico",
-	"title": "github/marius311/pypico",
-	"url": " https://rseng.github.io/software/repository/github/marius311/pypico",
-	"content": "Quickly compute the CMB powerspectra and matter transfer functions."
+	"github/abacusorg/zeldovich-PLT": {
+	"id": "github/abacusorg/zeldovich-PLT",
+	"title": "github/abacusorg/zeldovich-PLT",
+	"url": " https://rseng.github.io/software/repository/github/abacusorg/zeldovich-PLT",
+	"content": "Generates initial conditions for cosmological N-body simulations, optionally applying Particle Linear Theory corrections."
 	},
-	"github/ArgoCanada/argodata": {
-	"id": "github/ArgoCanada/argodata",
-	"title": "github/ArgoCanada/argodata",
-	"url": " https://rseng.github.io/software/repository/github/ArgoCanada/argodata",
-	"content": "Download Argo Ocean Float Data"
+	"github/jdcphysics/validation": {
+	"id": "github/jdcphysics/validation",
+	"title": "github/jdcphysics/validation",
+	"url": " https://rseng.github.io/software/repository/github/jdcphysics/validation",
+	"content": "codes to compare simulation data to various observations"
 	},
-	"github/pierfied/karmma": {
-	"id": "github/pierfied/karmma",
-	"title": "github/pierfied/karmma",
-	"url": " https://rseng.github.io/software/repository/github/pierfied/karmma",
-	"content": "KaRMMa - Kappa Reconstruction for Mass Mapping"
+	"github/surhh/nfitsview": {
+	"id": "github/surhh/nfitsview",
+	"title": "github/surhh/nfitsview",
+	"url": " https://rseng.github.io/software/repository/github/surhh/nfitsview",
+	"content": "nFITSview - A simple and user-friendly FITS image viewer"
 	},
-	"github/gavinsimpson/gratia": {
-	"id": "github/gavinsimpson/gratia",
-	"title": "github/gavinsimpson/gratia",
-	"url": " https://rseng.github.io/software/repository/github/gavinsimpson/gratia",
-	"content": "ggplot-based graphics and useful functions for GAMs fitted using the mgcv package"
+	"github/roualdes/bridgestan": {
+	"id": "github/roualdes/bridgestan",
+	"title": "github/roualdes/bridgestan",
+	"url": " https://rseng.github.io/software/repository/github/roualdes/bridgestan",
+	"content": "BridgeStan provides efficient in-memory access through Python, Julia, and R to the methods of a Stan model."
 	},
-	"github/kehrlab/PopDel": {
-	"id": "github/kehrlab/PopDel",
-	"title": "github/kehrlab/PopDel",
-	"url": " https://rseng.github.io/software/repository/github/kehrlab/PopDel",
-	"content": "Population-wide Deletion Calling"
+	"github/GunzIvan28/rMAP": {
+	"id": "github/GunzIvan28/rMAP",
+	"title": "github/GunzIvan28/rMAP",
+	"url": " https://rseng.github.io/software/repository/github/GunzIvan28/rMAP",
+	"content": "Bacterial analysis Toolbox for profiling the Resistome of ESKAPE pathogens using WGS"
 	},
-	"github/mswzeus/TargetNet": {
-	"id": "github/mswzeus/TargetNet",
-	"title": "github/mswzeus/TargetNet",
-	"url": " https://rseng.github.io/software/repository/github/mswzeus/TargetNet",
-	"content": "Official Pytorch implementation of TargetNet, Bioinformatics 2022"
+	"github/bramvandijk88/cacatoo": {
+	"id": "github/bramvandijk88/cacatoo",
+	"title": "github/bramvandijk88/cacatoo",
+	"url": " https://rseng.github.io/software/repository/github/bramvandijk88/cacatoo",
+	"content": "A javascript library for building, exploring, and sharing spatially structured models of biological systems"
 	},
-	"github/Xia-Yijie/Xponge": {
-	"id": "github/Xia-Yijie/Xponge",
-	"title": "github/Xia-Yijie/Xponge",
-	"url": " https://rseng.github.io/software/repository/github/Xia-Yijie/Xponge",
-	"content": "A lightweight and easy to customize python package to perform pre- and post-processing of molecular modelling"
+	"github/FofanovLab/mtsv_tools": {
+	"id": "github/FofanovLab/mtsv_tools",
+	"title": "github/FofanovLab/mtsv_tools",
+	"url": " https://rseng.github.io/software/repository/github/FofanovLab/mtsv_tools",
+	"content": "Core metagenomic binning tools for mtsv"
 	},
-	"github/mayuresh159/starsense_algorithms": {
-	"id": "github/mayuresh159/starsense_algorithms",
-	"title": "github/mayuresh159/starsense_algorithms",
-	"url": " https://rseng.github.io/software/repository/github/mayuresh159/starsense_algorithms",
-	"content": "This is a software package for testing and performance evaluation of different star sensors. The algorithms used for calculating quaternions from star field images are : centroiding, geometric voting and QUEST algorithms. The physical parameters of a star sensor are parametrized and by changing these parameters various performance estimators like sky coverage, memory requirement, timing requirements etc can be estimated for the selected star sensor. "
+	"github/labsyspharm/minerva-story": {
+	"id": "github/labsyspharm/minerva-story",
+	"title": "github/labsyspharm/minerva-story",
+	"url": " https://rseng.github.io/software/repository/github/labsyspharm/minerva-story",
+	"content": "Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images."
 	},
-	"github/CrowdTruth/CrowdTruth": {
-	"id": "github/CrowdTruth/CrowdTruth",
-	"title": "github/CrowdTruth/CrowdTruth",
-	"url": " https://rseng.github.io/software/repository/github/CrowdTruth/CrowdTruth",
-	"content": "Version 1.0 of the CrowdTruth Framework for crowdsourcing ground truth data, for training and evaluation of cognitive computing systems. Check out also version 2.0 at https://github.com/CrowdTruth/CrowdTruth-core. Data collected with CrowdTruth methodology: http://data.crowdtruth.org/. Our papers: http://crowdtruth.org/papers/"
+	"github/nombac/optab": {
+	"id": "github/nombac/optab",
+	"title": "github/nombac/optab",
+	"url": " https://rseng.github.io/software/repository/github/nombac/optab",
+	"content": "Public Fortran90 code package for generating ideal-gas opacity tables"
 	},
-	"github/vinisalazar/metaphor": {
-	"id": "github/vinisalazar/metaphor",
-	"title": "github/vinisalazar/metaphor",
-	"url": " https://rseng.github.io/software/repository/github/vinisalazar/metaphor",
-	"content": "Metaphor: a general-purpose workflow for assembly and binning of metagenomes"
+	"github/Siegel-Lab/BioSmoother": {
+	"id": "github/Siegel-Lab/BioSmoother",
+	"title": "github/Siegel-Lab/BioSmoother",
+	"url": " https://rseng.github.io/software/repository/github/Siegel-Lab/BioSmoother",
+	"content": "On-the-fly processing and visualization of interactome data"
 	},
-	"github/florisvb/PyNumDiff": {
-	"id": "github/florisvb/PyNumDiff",
-	"title": "github/florisvb/PyNumDiff",
-	"url": " https://rseng.github.io/software/repository/github/florisvb/PyNumDiff",
-	"content": "Methods for numerical differentiation of noisy data in python"
+	"github/alstat/ALUES": {
+	"id": "github/alstat/ALUES",
+	"title": "github/alstat/ALUES",
+	"url": " https://rseng.github.io/software/repository/github/alstat/ALUES",
+	"content": "Agricultural Land Use Evaluation System"
 	},
-	"github/ryansmcgee/seirsplus": {
-	"id": "github/ryansmcgee/seirsplus",
-	"title": "github/ryansmcgee/seirsplus",
-	"url": " https://rseng.github.io/software/repository/github/ryansmcgee/seirsplus",
-	"content": "Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing."
+	"github/MichaelAbdul-Masih/SPAMMS": {
+	"id": "github/MichaelAbdul-Masih/SPAMMS",
+	"title": "github/MichaelAbdul-Masih/SPAMMS",
+	"url": " https://rseng.github.io/software/repository/github/MichaelAbdul-Masih/SPAMMS",
+	"content": "None"
 	},
-	"github/max0x7ba/atomic_queue": {
-	"id": "github/max0x7ba/atomic_queue",
-	"title": "github/max0x7ba/atomic_queue",
-	"url": " https://rseng.github.io/software/repository/github/max0x7ba/atomic_queue",
-	"content": "C++ lockless queue."
+	"github/9505-PNNL/wmpy_power": {
+	"id": "github/9505-PNNL/wmpy_power",
+	"title": "github/9505-PNNL/wmpy_power",
+	"url": " https://rseng.github.io/software/repository/github/9505-PNNL/wmpy_power",
+	"content": " A hydropower simulation model"
 	},
-	"github/sheinasim/HiFiAdapterFilt": {
-	"id": "github/sheinasim/HiFiAdapterFilt",
-	"title": "github/sheinasim/HiFiAdapterFilt",
-	"url": " https://rseng.github.io/software/repository/github/sheinasim/HiFiAdapterFilt",
-	"content": "Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz)."
+	"github/philres/catfishq": {
+	"id": "github/philres/catfishq",
+	"title": "github/philres/catfishq",
+	"url": " https://rseng.github.io/software/repository/github/philres/catfishq",
+	"content": "Cat FASTQ files"
 	},
-	"github/cweniger/swordfish": {
-	"id": "github/cweniger/swordfish",
-	"title": "github/cweniger/swordfish",
-	"url": " https://rseng.github.io/software/repository/github/cweniger/swordfish",
-	"content": "A Python tool to study the information yield of counting experiments."
+	"github/philres/ngmlr": {
+	"id": "github/philres/ngmlr",
+	"title": "github/philres/ngmlr",
+	"url": " https://rseng.github.io/software/repository/github/philres/ngmlr",
+	"content": "NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations"
 	},
-	"github/HoBeZwe/SphericalScattering.jl": {
-	"id": "github/HoBeZwe/SphericalScattering.jl",
-	"title": "github/HoBeZwe/SphericalScattering.jl",
-	"url": " https://rseng.github.io/software/repository/github/HoBeZwe/SphericalScattering.jl",
-	"content": "This package provides semi-analytical solutions to the scattering of time harmonic and static electromagnetic fields from spherical objects."
+	"github/jacob-long/jtools": {
+	"id": "github/jacob-long/jtools",
+	"title": "github/jacob-long/jtools",
+	"url": " https://rseng.github.io/software/repository/github/jacob-long/jtools",
+	"content": "Tools for summarizing/visualizing regressions and other helpful stuff"
 	},
-	"github/QibangLiu/PDLSM-FEM_mpi": {
-	"id": "github/QibangLiu/PDLSM-FEM_mpi",
-	"title": "github/QibangLiu/PDLSM-FEM_mpi",
-	"url": " https://rseng.github.io/software/repository/github/QibangLiu/PDLSM-FEM_mpi",
-	"content": "PDLSM-FEM solver is a parallel implementation of (adaptively) coupled peridynamics least squares minimization and finite element method (PDLSM-FEM) in 2D and 3D using MPI parallelism. This cross-platform solver is written in a C++ language and includes implicit static, explicit dynamic, and implicit dynamic solvers for structure analysis under displacement or traction loading."
+	"github/jdeast/EXOFASTv2": {
+	"id": "github/jdeast/EXOFASTv2",
+	"title": "github/jdeast/EXOFASTv2",
+	"url": " https://rseng.github.io/software/repository/github/jdeast/EXOFASTv2",
+	"content": "An exoplanet transit, radial velocity, astrometry, and stellar fitting software package in IDL"
 	},
-	"github/PengyiZhang/DRR4Covid": {
-	"id": "github/PengyiZhang/DRR4Covid",
-	"title": "github/PengyiZhang/DRR4Covid",
-	"url": " https://rseng.github.io/software/repository/github/PengyiZhang/DRR4Covid",
-	"content": "DRR4Covid: Learning Automated COVID-19 Infection Segmentation from Digitally Reconstructed Radiographs"
+	"github/indraniel/fqgrep": {
+	"id": "github/indraniel/fqgrep",
+	"title": "github/indraniel/fqgrep",
+	"url": " https://rseng.github.io/software/repository/github/indraniel/fqgrep",
+	"content": "An approximate sequence pattern matcher for FASTQ/FASTA files."
 	},
-	"github/amoradinejad/limHaloPT": {
-	"id": "github/amoradinejad/limHaloPT",
-	"title": "github/amoradinejad/limHaloPT",
-	"url": " https://rseng.github.io/software/repository/github/amoradinejad/limHaloPT",
-	"content": "The public repository of limHaloPT (master for the most recent version of the code)"
+	"github/tomasstolker/ARTES": {
+	"id": "github/tomasstolker/ARTES",
+	"title": "github/tomasstolker/ARTES",
+	"url": " https://rseng.github.io/software/repository/github/tomasstolker/ARTES",
+	"content": "Radiative transfer of polarized light in 3D exoplanet atmospheres"
 	},
-	"github/frescigno/magpy_rv": {
-	"id": "github/frescigno/magpy_rv",
-	"title": "github/frescigno/magpy_rv",
-	"url": " https://rseng.github.io/software/repository/github/frescigno/magpy_rv",
-	"content": "Modelling Activity with Gaussian process regression in Python"
+	"github/tomasstolker/pycrires": {
+	"id": "github/tomasstolker/pycrires",
+	"title": "github/tomasstolker/pycrires",
+	"url": " https://rseng.github.io/software/repository/github/tomasstolker/pycrires",
+	"content": "Data reduction pipeline for VLT/CRIRES+"
 	},
-	"github/t-brandt/acorns-adi": {
-	"id": "github/t-brandt/acorns-adi",
-	"title": "github/t-brandt/acorns-adi",
-	"url": " https://rseng.github.io/software/repository/github/t-brandt/acorns-adi",
-	"content": "A software package to reduce angular differential imaging data from Subaru/HiCIAO"
+	"github/tomasstolker/species": {
+	"id": "github/tomasstolker/species",
+	"title": "github/tomasstolker/species",
+	"url": " https://rseng.github.io/software/repository/github/tomasstolker/species",
+	"content": "Toolkit for atmospheric characterization of directly imaged exoplanets"
 	},
-	"github/t-brandt/orvara": {
-	"id": "github/t-brandt/orvara",
-	"title": "github/t-brandt/orvara",
-	"url": " https://rseng.github.io/software/repository/github/t-brandt/orvara",
-	"content": "None"
+	"github/ModellingWebLab/chaste-codegen": {
+	"id": "github/ModellingWebLab/chaste-codegen",
+	"title": "github/ModellingWebLab/chaste-codegen",
+	"url": " https://rseng.github.io/software/repository/github/ModellingWebLab/chaste-codegen",
+	"content": "Code generation for Chaste based on cellmlmanip"
 	},
-	"github/t-brandt/fitramp": {
-	"id": "github/t-brandt/fitramp",
-	"title": "github/t-brandt/fitramp",
-	"url": " https://rseng.github.io/software/repository/github/t-brandt/fitramp",
-	"content": "Fit a ramp to a series of nondestructive reads, detect and reject jumps."
+	"github/davtsang/slimplectic": {
+	"id": "github/davtsang/slimplectic",
+	"title": "github/davtsang/slimplectic",
+	"url": " https://rseng.github.io/software/repository/github/davtsang/slimplectic",
+	"content": "Python code for generating and running &#34;slimplectic&#34; integrators (nonconservative variational integrators)"
 	},
-	"github/CEED/libCEED": {
-	"id": "github/CEED/libCEED",
-	"title": "github/CEED/libCEED",
-	"url": " https://rseng.github.io/software/repository/github/CEED/libCEED",
-	"content": "CEED Library: Code for Efficient Extensible Discretizations"
+	"github/DochtermannLab/BehavioralHeritability": {
+	"id": "github/DochtermannLab/BehavioralHeritability",
+	"title": "github/DochtermannLab/BehavioralHeritability",
+	"url": " https://rseng.github.io/software/repository/github/DochtermannLab/BehavioralHeritability",
+	"content": "None"
 	},
-	"github/achaikova/frbmclust": {
-	"id": "github/achaikova/frbmclust",
-	"title": "github/achaikova/frbmclust",
-	"url": " https://rseng.github.io/software/repository/github/achaikova/frbmclust",
+	"github/DochtermannLab/G-PopComparison": {
+	"id": "github/DochtermannLab/G-PopComparison",
+	"title": "github/DochtermannLab/G-PopComparison",
+	"url": " https://rseng.github.io/software/repository/github/DochtermannLab/G-PopComparison",
 	"content": "None"
 	},
-	"github/bedops/bedops": {
-	"id": "github/bedops/bedops",
-	"title": "github/bedops/bedops",
-	"url": " https://rseng.github.io/software/repository/github/bedops/bedops",
-	"content": ":microscope: BEDOPS: high-performance genomic feature operations"
+	"github/DESI-UR/VAST": {
+	"id": "github/DESI-UR/VAST",
+	"title": "github/DESI-UR/VAST",
+	"url": " https://rseng.github.io/software/repository/github/DESI-UR/VAST",
+	"content": "Void Analysis Software Toolkit"
 	},
-	"github/suneeshjacob/ACRoD": {
-	"id": "github/suneeshjacob/ACRoD",
-	"title": "github/suneeshjacob/ACRoD",
-	"url": " https://rseng.github.io/software/repository/github/suneeshjacob/ACRoD",
-	"content": "Automatic Computation for Robot Design"
+	"github/tomoyukif/MCPtaggR": {
+	"id": "github/tomoyukif/MCPtaggR",
+	"title": "github/tomoyukif/MCPtaggR",
+	"url": " https://rseng.github.io/software/repository/github/tomoyukif/MCPtaggR",
+	"content": "None"
 	},
-	"github/pyspeckit/pyspeckit": {
-	"id": "github/pyspeckit/pyspeckit",
-	"title": "github/pyspeckit/pyspeckit",
-	"url": " https://rseng.github.io/software/repository/github/pyspeckit/pyspeckit",
-	"content": "Python Spectroscopic Toolkit"
+	"github/grazianoucci/game": {
+	"id": "github/grazianoucci/game",
+	"title": "github/grazianoucci/game",
+	"url": " https://rseng.github.io/software/repository/github/grazianoucci/game",
+	"content": "GAlaxy Machine learning for Emission lines"
 	},
-	"github/LBC-LNBio/pyKVFinder": {
-	"id": "github/LBC-LNBio/pyKVFinder",
-	"title": "github/LBC-LNBio/pyKVFinder",
-	"url": " https://rseng.github.io/software/repository/github/LBC-LNBio/pyKVFinder",
-	"content": "pyKVFinder: Python-C parallel KVFinder"
+	"github/grazianoucci/cosmic_variance": {
+	"id": "github/grazianoucci/cosmic_variance",
+	"title": "github/grazianoucci/cosmic_variance",
+	"url": " https://rseng.github.io/software/repository/github/grazianoucci/cosmic_variance",
+	"content": "None"
 	},
-	"github/LBC-LNBio/PyMOL-KVFinder-web-Tools": {
-	"id": "github/LBC-LNBio/PyMOL-KVFinder-web-Tools",
-	"title": "github/LBC-LNBio/PyMOL-KVFinder-web-Tools",
-	"url": " https://rseng.github.io/software/repository/github/LBC-LNBio/PyMOL-KVFinder-web-Tools",
-	"content": "PyMOL KVFinder-web Tools: a PyMOL v2 plugin for interacting with KVFinder-web service"
+	"github/PIK-LPJmL/lpjmlkit": {
+	"id": "github/PIK-LPJmL/lpjmlkit",
+	"title": "github/PIK-LPJmL/lpjmlkit",
+	"url": " https://rseng.github.io/software/repository/github/PIK-LPJmL/lpjmlkit",
+	"content": "A collection of basic functions to facilitate the work with the DGVM LPJmL hosted at the Potsdam Institute for Climate Impact Research.     It provides functions for running LPJmL, as well as reading, processing and writing model-related data such as inputs and outputs or configuration files."
 	},
-	"github/LBC-LNBio/parKVFinder-win": {
-	"id": "github/LBC-LNBio/parKVFinder-win",
-	"title": "github/LBC-LNBio/parKVFinder-win",
-	"url": " https://rseng.github.io/software/repository/github/LBC-LNBio/parKVFinder-win",
-	"content": "parKVFinder-win: thread-level parallel KVFinder for Windows "
+	"github/xpsi-group/neost": {
+	"id": "github/xpsi-group/neost",
+	"title": "github/xpsi-group/neost",
+	"url": " https://rseng.github.io/software/repository/github/xpsi-group/neost",
+	"content": "None"
 	},
-	"github/curl/curl": {
-	"id": "github/curl/curl",
-	"title": "github/curl/curl",
-	"url": " https://rseng.github.io/software/repository/github/curl/curl",
-	"content": "A command line tool and library for transferring data with URL syntax, supporting DICT, FILE, FTP, FTPS, GOPHER, GOPHERS, HTTP, HTTPS, IMAP, IMAPS, LDAP, LDAPS, MQTT, POP3, POP3S, RTMP, RTMPS, RTSP, SCP, SFTP, SMB, SMBS, SMTP, SMTPS, TELNET and TFTP. libcurl offers a myriad of powerful features"
+	"github/xpsi-group/xpsi": {
+	"id": "github/xpsi-group/xpsi",
+	"title": "github/xpsi-group/xpsi",
+	"url": " https://rseng.github.io/software/repository/github/xpsi-group/xpsi",
+	"content": "X-PSI: X-ray Pulse Simulation and Inference"
 	},
-	"github/N-BodyShop/smooth": {
-	"id": "github/N-BodyShop/smooth",
-	"title": "github/N-BodyShop/smooth",
-	"url": " https://rseng.github.io/software/repository/github/N-BodyShop/smooth",
-	"content": "A Smoothing Program for N-body Simulations"
+	"github/ZJUFanLab/scTITANS": {
+	"id": "github/ZJUFanLab/scTITANS",
+	"title": "github/ZJUFanLab/scTITANS",
+	"url": " https://rseng.github.io/software/repository/github/ZJUFanLab/scTITANS",
+	"content": "Identifying key genes and cell subclusters for time-series single cell sequencing data"
 	},
-	"github/N-BodyShop/fof": {
-	"id": "github/N-BodyShop/fof",
-	"title": "github/N-BodyShop/fof",
-	"url": " https://rseng.github.io/software/repository/github/N-BodyShop/fof",
-	"content": "Friends of Friends halo finder"
+	"github/ZJUFanLab/bulk2space": {
+	"id": "github/ZJUFanLab/bulk2space",
+	"title": "github/ZJUFanLab/bulk2space",
+	"url": " https://rseng.github.io/software/repository/github/ZJUFanLab/bulk2space",
+	"content": "a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles"
 	},
-	"github/rribeiro-sci/pygomodo": {
-	"id": "github/rribeiro-sci/pygomodo",
-	"title": "github/rribeiro-sci/pygomodo",
-	"url": " https://rseng.github.io/software/repository/github/rribeiro-sci/pygomodo",
-	"content": "GPCRs modeling and docking with python"
+	"github/jeffdaily/parasail-python": {
+	"id": "github/jeffdaily/parasail-python",
+	"title": "github/jeffdaily/parasail-python",
+	"url": " https://rseng.github.io/software/repository/github/jeffdaily/parasail-python",
+	"content": "Python bindings for the parasail C library."
 	},
-	"github/mingzehuang/latentcor": {
-	"id": "github/mingzehuang/latentcor",
-	"title": "github/mingzehuang/latentcor",
-	"url": " https://rseng.github.io/software/repository/github/mingzehuang/latentcor",
-	"content": "latentcor is an R package provides estimation for latent correlation with mixed data types (continuous, binary, truncated and ternary)."
+	"github/jeffdaily/parasail": {
+	"id": "github/jeffdaily/parasail",
+	"title": "github/jeffdaily/parasail",
+	"url": " https://rseng.github.io/software/repository/github/jeffdaily/parasail",
+	"content": "Pairwise Sequence Alignment Library"
 	},
-	"github/kanaverse/kana": {
-	"id": "github/kanaverse/kana",
-	"title": "github/kanaverse/kana",
-	"url": " https://rseng.github.io/software/repository/github/kanaverse/kana",
-	"content": "Single cell analysis in the browser"
+	"github/cosimameyer/overviewR": {
+	"id": "github/cosimameyer/overviewR",
+	"title": "github/cosimameyer/overviewR",
+	"url": " https://rseng.github.io/software/repository/github/cosimameyer/overviewR",
+	"content": "Easily Extracting Information About Your Data"
 	},
-	"github/samwaseda/mamonca": {
-	"id": "github/samwaseda/mamonca",
-	"title": "github/samwaseda/mamonca",
-	"url": " https://rseng.github.io/software/repository/github/samwaseda/mamonca",
-	"content": "None"
+	"github/ejsafron/SATCHEL": {
+	"id": "github/ejsafron/SATCHEL",
+	"title": "github/ejsafron/SATCHEL",
+	"url": " https://rseng.github.io/software/repository/github/ejsafron/SATCHEL",
+	"content": "Pipeline to search for long-period exoplanet signals in Kepler time-series data classified on the Planet Hunters website."
 	},
-	"github/wvanzeist/riroriro": {
-	"id": "github/wvanzeist/riroriro",
-	"title": "github/wvanzeist/riroriro",
-	"url": " https://rseng.github.io/software/repository/github/wvanzeist/riroriro",
-	"content": "A code for simulating gravitational waves and evaluating their detectability."
+	"github/MintonGroup/swiftest": {
+	"id": "github/MintonGroup/swiftest",
+	"title": "github/MintonGroup/swiftest",
+	"url": " https://rseng.github.io/software/repository/github/MintonGroup/swiftest",
+	"content": "Swiftest is a software packaged designed to model the long-term dynamical dynamics of n-body systems with a dominant central body, like the solar system. "
 	},
-	"github/LabTranslationalArchitectomics/riboWaltz": {
-	"id": "github/LabTranslationalArchitectomics/riboWaltz",
-	"title": "github/LabTranslationalArchitectomics/riboWaltz",
-	"url": " https://rseng.github.io/software/repository/github/LabTranslationalArchitectomics/riboWaltz",
-	"content": "optimization of ribosome P-site positioning in ribosome profiling data"
+	"github/fair-software/fairtally": {
+	"id": "github/fair-software/fairtally",
+	"title": "github/fair-software/fairtally",
+	"url": " https://rseng.github.io/software/repository/github/fair-software/fairtally",
+	"content": "Make a report based on howfairis results"
 	},
-	"github/highamm/sptotal": {
-	"id": "github/highamm/sptotal",
-	"title": "github/highamm/sptotal",
-	"url": " https://rseng.github.io/software/repository/github/highamm/sptotal",
-	"content": "Package for Fitting Spatial Linear Models and Predicting Total Abundances for Finite Populations"
+	"github/fair-software/howfairis": {
+	"id": "github/fair-software/howfairis",
+	"title": "github/fair-software/howfairis",
+	"url": " https://rseng.github.io/software/repository/github/fair-software/howfairis",
+	"content": "Command line tool to analyze a GitHub or GitLab repository&#39;s compliance with the fair-software.eu recommendations"
 	},
-	"github/lauralwatkins/cjam": {
-	"id": "github/lauralwatkins/cjam",
-	"title": "github/lauralwatkins/cjam",
-	"url": " https://rseng.github.io/software/repository/github/lauralwatkins/cjam",
-	"content": "CJAM : Jeans Anisotropic MGE modelling code written in C from Watkins et al. 2013, MNRAS, 436, 2598"
+	"github/E3SM-Project/gdess": {
+	"id": "github/E3SM-Project/gdess",
+	"title": "github/E3SM-Project/gdess",
+	"url": " https://rseng.github.io/software/repository/github/E3SM-Project/gdess",
+	"content": "Tool for evaluating atmospheric carbon dioxide concentrations as simulated by Earth system models"
 	},
-	"github/liulizhi1996/HPODNets": {
-	"id": "github/liulizhi1996/HPODNets",
-	"title": "github/liulizhi1996/HPODNets",
-	"url": " https://rseng.github.io/software/repository/github/liulizhi1996/HPODNets",
-	"content": "HPODNets: deep graph convolutional networks for predicting human protein-phenotype associations"
+	"github/OrlandoLam/SAMT": {
+	"id": "github/OrlandoLam/SAMT",
+	"title": "github/OrlandoLam/SAMT",
+	"url": " https://rseng.github.io/software/repository/github/OrlandoLam/SAMT",
+	"content": "South Australian Macrobenthic Traits database "
 	},
-	"github/ericmandel/funtools": {
-	"id": "github/ericmandel/funtools",
-	"title": "github/ericmandel/funtools",
-	"url": " https://rseng.github.io/software/repository/github/ericmandel/funtools",
-	"content": "a &#34;minimal buy-in&#34; FITS library and utility package for astronomical data analysis"
+	"github/natir/yacrd": {
+	"id": "github/natir/yacrd",
+	"title": "github/natir/yacrd",
+	"url": " https://rseng.github.io/software/repository/github/natir/yacrd",
+	"content": "Yet Another Chimeric Read Detector"
 	},
-	"github/chanzuckerberg/shasta": {
-	"id": "github/chanzuckerberg/shasta",
-	"title": "github/chanzuckerberg/shasta",
-	"url": " https://rseng.github.io/software/repository/github/chanzuckerberg/shasta",
-	"content": "De novo assembly from Oxford Nanopore reads."
+	"github/natir/rustyread": {
+	"id": "github/natir/rustyread",
+	"title": "github/natir/rustyread",
+	"url": " https://rseng.github.io/software/repository/github/natir/rustyread",
+	"content": "A long read simulator based on badread idea"
 	},
-	"github/chanzuckerberg/idseq-dag": {
-	"id": "github/chanzuckerberg/idseq-dag",
-	"title": "github/chanzuckerberg/idseq-dag",
-	"url": " https://rseng.github.io/software/repository/github/chanzuckerberg/idseq-dag",
-	"content": "Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows."
+	"github/natir/vcf2parquet": {
+	"id": "github/natir/vcf2parquet",
+	"title": "github/natir/vcf2parquet",
+	"url": " https://rseng.github.io/software/repository/github/natir/vcf2parquet",
+	"content": "Convert vcf in parquet "
 	},
-	"github/chanzuckerberg/cellxgene": {
-	"id": "github/chanzuckerberg/cellxgene",
-	"title": "github/chanzuckerberg/cellxgene",
-	"url": " https://rseng.github.io/software/repository/github/chanzuckerberg/cellxgene",
-	"content": "an interactive explorer for single-cell transcriptomics data"
+	"github/spiketools/spiketools": {
+	"id": "github/spiketools/spiketools",
+	"title": "github/spiketools/spiketools",
+	"url": " https://rseng.github.io/software/repository/github/spiketools/spiketools",
+	"content": "Tools for analyzing spiking data."
 	},
-	"github/nifty-ppl/nifty": {
-	"id": "github/nifty-ppl/nifty",
-	"title": "github/nifty-ppl/nifty",
-	"url": " https://rseng.github.io/software/repository/github/nifty-ppl/nifty",
-	"content": "Probabilistic programming framework for signal inference algorithms that operate regardless of the underlying grids and their resolutions"
+	"github/ThomasEdwardRiley/xpsi-pre-transfer": {
+	"id": "github/ThomasEdwardRiley/xpsi-pre-transfer",
+	"title": "github/ThomasEdwardRiley/xpsi-pre-transfer",
+	"url": " https://rseng.github.io/software/repository/github/ThomasEdwardRiley/xpsi-pre-transfer",
+	"content": "X-PSI: X-ray Pulse Simulation and Inference"
 	},
-	"github/apertif/apercal": {
-	"id": "github/apertif/apercal",
-	"title": "github/apertif/apercal",
-	"url": " https://rseng.github.io/software/repository/github/apertif/apercal",
-	"content": "None"
+	"github/bionlplab/GlaucomaNet": {
+	"id": "github/bionlplab/GlaucomaNet",
+	"title": "github/bionlplab/GlaucomaNet",
+	"url": " https://rseng.github.io/software/repository/github/bionlplab/GlaucomaNet",
+	"content": "A deep-learning algorithm for the diagnosis of primary open-angle glaucoma from fundus photographs"
 	},
-	"github/IFB-ElixirFr/edam-browser": {
-	"id": "github/IFB-ElixirFr/edam-browser",
-	"title": "github/IFB-ElixirFr/edam-browser",
-	"url": " https://rseng.github.io/software/repository/github/IFB-ElixirFr/edam-browser",
-	"content": "Stand alone js browser for EDAM Ontology"
+	"github/arangrhie/merfin": {
+	"id": "github/arangrhie/merfin",
+	"title": "github/arangrhie/merfin",
+	"url": " https://rseng.github.io/software/repository/github/arangrhie/merfin",
+	"content": "Evaluate variant calls and its combination with k-mer multiplicity"
 	},
-	"github/Martindelosrios/ROGER": {
-	"id": "github/Martindelosrios/ROGER",
-	"title": "github/Martindelosrios/ROGER",
-	"url": " https://rseng.github.io/software/repository/github/Martindelosrios/ROGER",
-	"content": "None"
+	"github/bobleesj/cifkit": {
+	"id": "github/bobleesj/cifkit",
+	"title": "github/bobleesj/cifkit",
+	"url": " https://rseng.github.io/software/repository/github/bobleesj/cifkit",
+	"content": "High-throughput .cif analysis made easy. Visit: https://bobleesj.github.io/cifkit/"
 	},
-	"github/Martindelosrios/cosmic-kite": {
-	"id": "github/Martindelosrios/cosmic-kite",
-	"title": "github/Martindelosrios/cosmic-kite",
-	"url": " https://rseng.github.io/software/repository/github/Martindelosrios/cosmic-kite",
-	"content": "None"
+	"github/sibyllema/Fast-Multiscale-Diffusion-on-Graphs": {
+	"id": "github/sibyllema/Fast-Multiscale-Diffusion-on-Graphs",
+	"title": "github/sibyllema/Fast-Multiscale-Diffusion-on-Graphs",
+	"url": " https://rseng.github.io/software/repository/github/sibyllema/Fast-Multiscale-Diffusion-on-Graphs",
+	"content": "Standalone code to generate the figures for the paper &#34;Fast Multiscale Diffusion on Graphs&#34; accepted at ICASSP 2022."
 	},
-	"github/Martindelosrios/MeSsI": {
-	"id": "github/Martindelosrios/MeSsI",
-	"title": "github/Martindelosrios/MeSsI",
-	"url": " https://rseng.github.io/software/repository/github/Martindelosrios/MeSsI",
-	"content": "None"
+	"github/jcolinhill/pyilc": {
+	"id": "github/jcolinhill/pyilc",
+	"title": "github/jcolinhill/pyilc",
+	"url": " https://rseng.github.io/software/repository/github/jcolinhill/pyilc",
+	"content": "Needlet ILC in Python"
 	},
-	"github/lilyminium/psiresp": {
-	"id": "github/lilyminium/psiresp",
-	"title": "github/lilyminium/psiresp",
-	"url": " https://rseng.github.io/software/repository/github/lilyminium/psiresp",
-	"content": "RESP with inter- and intra-molecular constraints in Psi4."
+	"github/RosettaCommons/RFDesign": {
+	"id": "github/RosettaCommons/RFDesign",
+	"title": "github/RosettaCommons/RFDesign",
+	"url": " https://rseng.github.io/software/repository/github/RosettaCommons/RFDesign",
+	"content": "Protein hallucination and inpainting with RoseTTAFold"
 	},
-	"github/moeyensj/atm": {
-	"id": "github/moeyensj/atm",
-	"title": "github/moeyensj/atm",
-	"url": " https://rseng.github.io/software/repository/github/moeyensj/atm",
-	"content": "Asteroid Thermal Modeling"
+	"github/RosettaCommons/RoseTTAFold": {
+	"id": "github/RosettaCommons/RoseTTAFold",
+	"title": "github/RosettaCommons/RoseTTAFold",
+	"url": " https://rseng.github.io/software/repository/github/RosettaCommons/RoseTTAFold",
+	"content": "This package contains deep learning models and related scripts for RoseTTAFold"
 	},
-	"github/scotthgn/AGNvar": {
-	"id": "github/scotthgn/AGNvar",
-	"title": "github/scotthgn/AGNvar",
-	"url": " https://rseng.github.io/software/repository/github/scotthgn/AGNvar",
-	"content": "Python code for modelling spectral timing properties in AGN. Performs calculations of fully time-dependent SEDs following an input variable X-ray light-curve (See Hagen &amp; Done (2023a)"
+	"github/ernewton/tellrv": {
+	"id": "github/ernewton/tellrv",
+	"title": "github/ernewton/tellrv",
+	"url": " https://rseng.github.io/software/repository/github/ernewton/tellrv",
+	"content": "Radial velocities for low-resolution NIR spectra using telluric features to provide absolute wavelength calibration"
 	},
-	"github/scotthgn/relagn": {
-	"id": "github/scotthgn/relagn",
-	"title": "github/scotthgn/relagn",
-	"url": " https://rseng.github.io/software/repository/github/scotthgn/relagn",
-	"content": "AGN SED model based off AGNSED (Kubota &amp; Done 2018), but taking into account full GR ray tracing. These relativistic correction are calculated by doing the convolution with the relativistic transfer code KYCONV (Dovciak, Karas &amp; Yaqoob 2004) at each radial annulus"
+	"github/gagneurlab/drop": {
+	"id": "github/gagneurlab/drop",
+	"title": "github/gagneurlab/drop",
+	"url": " https://rseng.github.io/software/repository/github/gagneurlab/drop",
+	"content": "(Detection of RNA Outlier Pipeline) pipeline to find aberrant gene expression events in RNA sequencing data."
 	},
-	"github/pyamg/pyamg": {
-	"id": "github/pyamg/pyamg",
-	"title": "github/pyamg/pyamg",
-	"url": " https://rseng.github.io/software/repository/github/pyamg/pyamg",
-	"content": "Algebraic Multigrid Solvers in Python"
+	"github/SysBioUAB/hpi_predictor": {
+	"id": "github/SysBioUAB/hpi_predictor",
+	"title": "github/SysBioUAB/hpi_predictor",
+	"url": " https://rseng.github.io/software/repository/github/SysBioUAB/hpi_predictor",
+	"content": "Bash+R tool to predict host-pathogen protein-protein interactions based on numerical encoding of physicochemical descriptors"
 	},
-	"github/FlorianThibord/OptimiR": {
-	"id": "github/FlorianThibord/OptimiR",
-	"title": "github/FlorianThibord/OptimiR",
-	"url": " https://rseng.github.io/software/repository/github/FlorianThibord/OptimiR",
-	"content": "miRSeq data alignment workflow - integrates genetic information to assess the impact of variants on miRNA expression"
+	"github/mihanke/athos": {
+	"id": "github/mihanke/athos",
+	"title": "github/mihanke/athos",
+	"url": " https://rseng.github.io/software/repository/github/mihanke/athos",
+	"content": "ATHOS: On-the-fly stellar parameter determination of FGK stars based on flux ratios from optical spectra"
 	},
-	"github/evanoconnor/GR1D": {
-	"id": "github/evanoconnor/GR1D",
-	"title": "github/evanoconnor/GR1D",
-	"url": " https://rseng.github.io/software/repository/github/evanoconnor/GR1D",
-	"content": "General Relativistic, Spherically Symmetry, Neutrino Transport Code for Stellar Collapse"
+	"github/ReSurfEMG/ReSurfEMG": {
+	"id": "github/ReSurfEMG/ReSurfEMG",
+	"title": "github/ReSurfEMG/ReSurfEMG",
+	"url": " https://rseng.github.io/software/repository/github/ReSurfEMG/ReSurfEMG",
+	"content": "An open source library for analysis of respiratory EMG"
 	},
-	"github/eweitz/ideogram": {
-	"id": "github/eweitz/ideogram",
-	"title": "github/eweitz/ideogram",
-	"url": " https://rseng.github.io/software/repository/github/eweitz/ideogram",
-	"content": "Chromosome visualization for the web"
+	"github/cosmo-epfl/chemiscope": {
+	"id": "github/cosmo-epfl/chemiscope",
+	"title": "github/cosmo-epfl/chemiscope",
+	"url": " https://rseng.github.io/software/repository/github/cosmo-epfl/chemiscope",
+	"content": "An interactive structure/property explorer for materials and molecules"
 	},
-	"github/artic-network/readucks": {
-	"id": "github/artic-network/readucks",
-	"title": "github/artic-network/readucks",
-	"url": " https://rseng.github.io/software/repository/github/artic-network/readucks",
-	"content": "Nanopore read de-multiplexer"
+	"github/ajshajib/LensingETC": {
+	"id": "github/ajshajib/LensingETC",
+	"title": "github/ajshajib/LensingETC",
+	"url": " https://rseng.github.io/software/repository/github/ajshajib/LensingETC",
+	"content": "Lensing Exposure Time Calculator"
 	},
-	"github/artic-network/fieldbioinformatics": {
-	"id": "github/artic-network/fieldbioinformatics",
-	"title": "github/artic-network/fieldbioinformatics",
-	"url": " https://rseng.github.io/software/repository/github/artic-network/fieldbioinformatics",
-	"content": "The ARTIC field bioinformatics pipeline"
+	"github/ajshajib/dolphin": {
+	"id": "github/ajshajib/dolphin",
+	"title": "github/ajshajib/dolphin",
+	"url": " https://rseng.github.io/software/repository/github/ajshajib/dolphin",
+	"content": "Automated pipeline for lens modelling based on lenstronomy."
 	},
-	"github/sb-ncbr/golem": {
-	"id": "github/sb-ncbr/golem",
-	"title": "github/sb-ncbr/golem",
-	"url": " https://rseng.github.io/software/repository/github/sb-ncbr/golem",
-	"content": "GOLEM: distribution of Gene regulatOry eLEMents within the plant promoters"
+	"github/ethankruse/koi3278": {
+	"id": "github/ethankruse/koi3278",
+	"title": "github/ethankruse/koi3278",
+	"url": " https://rseng.github.io/software/repository/github/ethankruse/koi3278",
+	"content": "Analysis files for the KOI-3278 system"
 	},
-	"github/jcibanezm/DustCharge": {
-	"id": "github/jcibanezm/DustCharge",
-	"title": "github/jcibanezm/DustCharge",
-	"url": " https://rseng.github.io/software/repository/github/jcibanezm/DustCharge",
-	"content": "Calculate the equilibrium charge distribution for a dust grain of a given size and composition, depending on the local interstellar medium conditions, such as: density, temperature, ionization fraction, local radiation field strength and cosmic ray ionization fraction."
+	"github/UrbanRuralSystems/ur-scape": {
+	"id": "github/UrbanRuralSystems/ur-scape",
+	"title": "github/UrbanRuralSystems/ur-scape",
+	"url": " https://rseng.github.io/software/repository/github/UrbanRuralSystems/ur-scape",
+	"content": "None"
 	},
-	"github/danielreardon/scintools": {
-	"id": "github/danielreardon/scintools",
-	"title": "github/danielreardon/scintools",
-	"url": " https://rseng.github.io/software/repository/github/danielreardon/scintools",
-	"content": "Tools for analysing of pulsar scintillations "
+	"github/ggciag/mandyoc": {
+	"id": "github/ggciag/mandyoc",
+	"title": "github/ggciag/mandyoc",
+	"url": " https://rseng.github.io/software/repository/github/ggciag/mandyoc",
+	"content": "MANDYOC is a finite element code written on top of the PETSc library  to simulate thermo-chemical convection of the Earth&#39;s mantle"
 	},
-	"github/yiling0210/APIR": {
-	"id": "github/yiling0210/APIR",
-	"title": "github/yiling0210/APIR",
-	"url": " https://rseng.github.io/software/repository/github/yiling0210/APIR",
+	"github/Stuermer/EchelleSimulator": {
+	"id": "github/Stuermer/EchelleSimulator",
+	"title": "github/Stuermer/EchelleSimulator",
+	"url": " https://rseng.github.io/software/repository/github/Stuermer/EchelleSimulator",
 	"content": "None"
 	},
-	"github/psheehan/pdspy": {
-	"id": "github/psheehan/pdspy",
-	"title": "github/psheehan/pdspy",
-	"url": " https://rseng.github.io/software/repository/github/psheehan/pdspy",
-	"content": "pdspy: MCMC for Monte Carlo Dust Radiative Transfer Modeling"
+	"github/rae-holcomb/SpinSpotter": {
+	"id": "github/rae-holcomb/SpinSpotter",
+	"title": "github/rae-holcomb/SpinSpotter",
+	"url": " https://rseng.github.io/software/repository/github/rae-holcomb/SpinSpotter",
+	"content": "An automated algorithm to calculate stellar rotation periods from high-cadence photometry."
 	},
-	"github/clemson-cal/sailfish": {
-	"id": "github/clemson-cal/sailfish",
-	"title": "github/clemson-cal/sailfish",
-	"url": " https://rseng.github.io/software/repository/github/clemson-cal/sailfish",
-	"content": "GPU-accelerated astrophysics gas dynamics code"
+	"github/ashleychontos/pySYD": {
+	"id": "github/ashleychontos/pySYD",
+	"title": "github/ashleychontos/pySYD",
+	"url": " https://rseng.github.io/software/repository/github/ashleychontos/pySYD",
+	"content": "automated measurements of global asteroseismic parameters"
 	},
-	"github/bwa-mem2/bwa-mem2": {
-	"id": "github/bwa-mem2/bwa-mem2",
-	"title": "github/bwa-mem2/bwa-mem2",
-	"url": " https://rseng.github.io/software/repository/github/bwa-mem2/bwa-mem2",
-	"content": "The next version of bwa-mem "
+	"github/pcubillos/rate": {
+	"id": "github/pcubillos/rate",
+	"title": "github/pcubillos/rate",
+	"url": " https://rseng.github.io/software/repository/github/pcubillos/rate",
+	"content": "Reliable Analytic Thermochemical Equilibrium"
 	},
-	"github/GilbertLabUCSF/CanDI": {
-	"id": "github/GilbertLabUCSF/CanDI",
-	"title": "github/GilbertLabUCSF/CanDI",
-	"url": " https://rseng.github.io/software/repository/github/GilbertLabUCSF/CanDI",
-	"content": "CanDI - A global cancer data integrator"
+	"github/pcubillos/pyratbay": {
+	"id": "github/pcubillos/pyratbay",
+	"title": "github/pcubillos/pyratbay",
+	"url": " https://rseng.github.io/software/repository/github/pcubillos/pyratbay",
+	"content": "Python Radiative Transfer in a Bayesian Framework"
 	},
-	"github/bioinfo-ut/GenomeTester4": {
-	"id": "github/bioinfo-ut/GenomeTester4",
-	"title": "github/bioinfo-ut/GenomeTester4",
-	"url": " https://rseng.github.io/software/repository/github/bioinfo-ut/GenomeTester4",
-	"content": "A toolkit for performing set operations - union, intersection and complement - on k-mer lists."
+	"github/pcubillos/mc3": {
+	"id": "github/pcubillos/mc3",
+	"title": "github/pcubillos/mc3",
+	"url": " https://rseng.github.io/software/repository/github/pcubillos/mc3",
+	"content": "Python MCMC Sampler"
 	},
-	"github/bioinfo-ut/PlasmidSeeker": {
-	"id": "github/bioinfo-ut/PlasmidSeeker",
-	"title": "github/bioinfo-ut/PlasmidSeeker",
-	"url": " https://rseng.github.io/software/repository/github/bioinfo-ut/PlasmidSeeker",
-	"content": "A k-mer based program for the identification of known plasmids from whole-genome sequencing reads"
+	"github/pcubillos/repack": {
+	"id": "github/pcubillos/repack",
+	"title": "github/pcubillos/repack",
+	"url": " https://rseng.github.io/software/repository/github/pcubillos/repack",
+	"content": "Repack and compress line-transition data"
 	},
-	"github/alchemistry/alchemlyb": {
-	"id": "github/alchemistry/alchemlyb",
-	"title": "github/alchemistry/alchemlyb",
-	"url": " https://rseng.github.io/software/repository/github/alchemistry/alchemlyb",
-	"content": "the simple alchemistry library"
+	"github/tudelft3d/3dfier": {
+	"id": "github/tudelft3d/3dfier",
+	"title": "github/tudelft3d/3dfier",
+	"url": " https://rseng.github.io/software/repository/github/tudelft3d/3dfier",
+	"content": "The open-source tool for creating of 3D models"
 	},
-	"github/koide3/small_gicp": {
-	"id": "github/koide3/small_gicp",
-	"title": "github/koide3/small_gicp",
-	"url": " https://rseng.github.io/software/repository/github/koide3/small_gicp",
-	"content": "Efficient and parallel algorithms for point cloud registration [C++, Python]"
+	"github/mpokorny/vysmaw": {
+	"id": "github/mpokorny/vysmaw",
+	"title": "github/mpokorny/vysmaw",
+	"url": " https://rseng.github.io/software/repository/github/mpokorny/vysmaw",
+	"content": "Fast visibility stream muncher"
 	},
-	"github/al-mcintyre/mCaller": {
-	"id": "github/al-mcintyre/mCaller",
-	"title": "github/al-mcintyre/mCaller",
-	"url": " https://rseng.github.io/software/repository/github/al-mcintyre/mCaller",
-	"content": "A python program to call methylation (m6A in DNA) from nanopore signal data "
+	"github/XSLiuLab/Seq2Neo": {
+	"id": "github/XSLiuLab/Seq2Neo",
+	"title": "github/XSLiuLab/Seq2Neo",
+	"url": " https://rseng.github.io/software/repository/github/XSLiuLab/Seq2Neo",
+	"content": "Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction"
 	},
-	"github/signaturescience/skater": {
-	"id": "github/signaturescience/skater",
-	"title": "github/signaturescience/skater",
-	"url": " https://rseng.github.io/software/repository/github/signaturescience/skater",
-	"content": "SKATE R Utilities"
+	"github/shangguandong1996/FindIT2": {
+	"id": "github/shangguandong1996/FindIT2",
+	"title": "github/shangguandong1996/FindIT2",
+	"url": " https://rseng.github.io/software/repository/github/shangguandong1996/FindIT2",
+	"content": "None"
 	},
-	"github/bobleesj/cifkit": {
-	"id": "github/bobleesj/cifkit",
-	"title": "github/bobleesj/cifkit",
-	"url": " https://rseng.github.io/software/repository/github/bobleesj/cifkit",
-	"content": "High-throughput .cif analysis made easy. Visit: https://bobleesj.github.io/cifkit/"
+	"github/ml-evs/matador": {
+	"id": "github/ml-evs/matador",
+	"title": "github/ml-evs/matador",
+	"url": " https://rseng.github.io/software/repository/github/ml-evs/matador",
+	"content": "⚗️ matador is an aggregator, manipulator and runner of first-principles calculations, written with a bent towards battery 🔋 electrode materials."
 	},
-	"github/harrispopgen/mutyper": {
-	"id": "github/harrispopgen/mutyper",
-	"title": "github/harrispopgen/mutyper",
-	"url": " https://rseng.github.io/software/repository/github/harrispopgen/mutyper",
-	"content": "Ancestral k-mer mutation types for SNP data"
+	"github/hablabx/rfast": {
+	"id": "github/hablabx/rfast",
+	"title": "github/hablabx/rfast",
+	"url": " https://rseng.github.io/software/repository/github/hablabx/rfast",
+	"content": "A fast tool for planetary spectral forward and inverse modeling."
+	},
+	"github/milnus/Magphi": {
+	"id": "github/milnus/Magphi",
+	"title": "github/milnus/Magphi",
+	"url": " https://rseng.github.io/software/repository/github/milnus/Magphi",
+	"content": "Tool intended to pull out sequences and annotations between insertion sites specified by the user."
+	},
+	"github/milnus/Corekaburra": {
+	"id": "github/milnus/Corekaburra",
+	"title": "github/milnus/Corekaburra",
+	"url": " https://rseng.github.io/software/repository/github/milnus/Corekaburra",
+	"content": "Program to find core gene consensus synteny, hotspots between these, and construct spatially aware multiple sequence alignments of core genes "
 	},
 	"github/GaetanBenoitDev/metaMDBG": {
 	"id": "github/GaetanBenoitDev/metaMDBG",
@@ -18123,1745 +17775,1823 @@
 	"url": " https://rseng.github.io/software/repository/github/GaetanBenoitDev/metaMDBG",
 	"content": "MetaMDBG: a lightweight assembler for long and accurate metagenomics reads."
 	},
-	"github/marziarivi/RadioLensfit2": {
-	"id": "github/marziarivi/RadioLensfit2",
-	"title": "github/marziarivi/RadioLensfit2",
-	"url": " https://rseng.github.io/software/repository/github/marziarivi/RadioLensfit2",
-	"content": "Radio Weak Lensing shear measurement in the Visibility Domain "
+	"github/palaeoware/revosim": {
+	"id": "github/palaeoware/revosim",
+	"title": "github/palaeoware/revosim",
+	"url": " https://rseng.github.io/software/repository/github/palaeoware/revosim",
+	"content": "REvoSim - The [R]apid [Evo]lutionary [Sim]ulator - An individual-based evolutionary model"
 	},
-	"github/tloredo/CUDAHM": {
-	"id": "github/tloredo/CUDAHM",
-	"title": "github/tloredo/CUDAHM",
-	"url": " https://rseng.github.io/software/repository/github/tloredo/CUDAHM",
-	"content": "Routines for using CUDA to perform MCMC Sampling of Hierarchical Models with GPUs."
+	"github/palaeoware/trevosim": {
+	"id": "github/palaeoware/trevosim",
+	"title": "github/palaeoware/trevosim",
+	"url": " https://rseng.github.io/software/repository/github/palaeoware/trevosim",
+	"content": "TREvoSim - The [Tr]ee [Evo]lutionary [Sim]ulator program"
 	},
-	"github/nlesc-sherlock/emma": {
-	"id": "github/nlesc-sherlock/emma",
-	"title": "github/nlesc-sherlock/emma",
-	"url": " https://rseng.github.io/software/repository/github/nlesc-sherlock/emma",
-	"content": "Ansible playbook to create a cluster with GlusterFS, Docker, Spark and JupyterHub services"
+	"github/thetisproject/thetis": {
+	"id": "github/thetisproject/thetis",
+	"title": "github/thetisproject/thetis",
+	"url": " https://rseng.github.io/software/repository/github/thetisproject/thetis",
+	"content": "Finite element flow solver for simulating coastal and estuarine flows."
+	},
+	"github/latrop/DECA": {
+	"id": "github/latrop/DECA",
+	"title": "github/latrop/DECA",
+	"url": " https://rseng.github.io/software/repository/github/latrop/DECA",
+	"content": "A tool for decomposition of images of galaxies"
+	},
+	"github/zonca/dst": {
+	"id": "github/zonca/dst",
+	"title": "github/zonca/dst",
+	"url": " https://rseng.github.io/software/repository/github/zonca/dst",
+	"content": "None"
+	},
+	"github/zonca/python-qucs": {
+	"id": "github/zonca/python-qucs",
+	"title": "github/zonca/python-qucs",
+	"url": " https://rseng.github.io/software/repository/github/zonca/python-qucs",
+	"content": "QUCS, (http://qucs.sf.net), is a powerful open-source circuit simulator, python-qucs is a Python package that allows to automate the process of preparing input netlists for several simulations, run them, and export the results."
+	},
+	"github/q1cui/discourseGT": {
+	"id": "github/q1cui/discourseGT",
+	"title": "github/q1cui/discourseGT",
+	"url": " https://rseng.github.io/software/repository/github/q1cui/discourseGT",
+	"content": "discourseGT — Analyze Group Patterns using Graph Theory in Educational Settings"
+	},
+	"github/Climdyn/qgs": {
+	"id": "github/Climdyn/qgs",
+	"title": "github/Climdyn/qgs",
+	"url": " https://rseng.github.io/software/repository/github/Climdyn/qgs",
+	"content": "A 2-layer quasi-geostrophic atmospheric model in Python. Can be coupled to a simple land or shallow-water ocean component."
+	},
+	"github/qboxcode/qbox-public": {
+	"id": "github/qboxcode/qbox-public",
+	"title": "github/qboxcode/qbox-public",
+	"url": " https://rseng.github.io/software/repository/github/qboxcode/qbox-public",
+	"content": "Qbox public repository"
+	},
+	"github/imperialchem/mrd-demo": {
+	"id": "github/imperialchem/mrd-demo",
+	"title": "github/imperialchem/mrd-demo",
+	"url": " https://rseng.github.io/software/repository/github/imperialchem/mrd-demo",
+	"content": "Demonstration of classical molecular reaction dynamics for a tri-atomic system"
 	},
-	"github/nlesc-sherlock/Rig": {
-	"id": "github/nlesc-sherlock/Rig",
-	"title": "github/nlesc-sherlock/Rig",
-	"url": " https://rseng.github.io/software/repository/github/nlesc-sherlock/Rig",
+	"github/mikaelLEROY/AxionNS_RayTracing": {
+	"id": "github/mikaelLEROY/AxionNS_RayTracing",
+	"title": "github/mikaelLEROY/AxionNS_RayTracing",
+	"url": " https://rseng.github.io/software/repository/github/mikaelLEROY/AxionNS_RayTracing",
 	"content": "None"
 	},
-	"github/GEUS-Glaciology-and-Climate/pypromice": {
-	"id": "github/GEUS-Glaciology-and-Climate/pypromice",
-	"title": "github/GEUS-Glaciology-and-Climate/pypromice",
-	"url": " https://rseng.github.io/software/repository/github/GEUS-Glaciology-and-Climate/pypromice",
-	"content": "Process AWS data from L0 (raw logger) through Lx (end user)"
-	},
-	"github/andycasey/sick": {
-	"id": "github/andycasey/sick",
-	"title": "github/andycasey/sick",
-	"url": " https://rseng.github.io/software/repository/github/andycasey/sick",
-	"content": "sick, the spectroscopic inference crank"
+	"github/daler/pybedtools": {
+	"id": "github/daler/pybedtools",
+	"title": "github/daler/pybedtools",
+	"url": " https://rseng.github.io/software/repository/github/daler/pybedtools",
+	"content": "Python wrapper -- and more -- for BEDTools (bioinformatics tools for &#34;genome arithmetic&#34;)"
 	},
-	"github/plazar/coast_guard": {
-	"id": "github/plazar/coast_guard",
-	"title": "github/plazar/coast_guard",
-	"url": " https://rseng.github.io/software/repository/github/plazar/coast_guard",
-	"content": "A python/PSRCHIVE-based timing pipeline for reducing Effelsberg data."
+	"github/daler/gffutils": {
+	"id": "github/daler/gffutils",
+	"title": "github/daler/gffutils",
+	"url": " https://rseng.github.io/software/repository/github/daler/gffutils",
+	"content": "GFF and GTF file manipulation and interconversion"
 	},
-	"github/plazar/TOASTER": {
-	"id": "github/plazar/TOASTER",
-	"title": "github/plazar/TOASTER",
-	"url": " https://rseng.github.io/software/repository/github/plazar/TOASTER",
-	"content": "A framework for generating, storing and tracking high-precision TOAs for PTAs as well as observation meta data and processing details."
+	"github/matchms/ms2deepscore": {
+	"id": "github/matchms/ms2deepscore",
+	"title": "github/matchms/ms2deepscore",
+	"url": " https://rseng.github.io/software/repository/github/matchms/ms2deepscore",
+	"content": "Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity"
 	},
-	"github/comprna/reorientexpress": {
-	"id": "github/comprna/reorientexpress",
-	"title": "github/comprna/reorientexpress",
-	"url": " https://rseng.github.io/software/repository/github/comprna/reorientexpress",
-	"content": "Transcriptome long-read orientation with Deep Learning"
+	"github/matchms/matchms": {
+	"id": "github/matchms/matchms",
+	"title": "github/matchms/matchms",
+	"url": " https://rseng.github.io/software/repository/github/matchms/matchms",
+	"content": "Python library for fuzzy comparison of mass spectrum data and other Python objects"
 	},
-	"github/comprna/SUPPA": {
-	"id": "github/comprna/SUPPA",
-	"title": "github/comprna/SUPPA",
-	"url": " https://rseng.github.io/software/repository/github/comprna/SUPPA",
-	"content": " SUPPA2: Fast quantification of differential splicing "
+	"github/kanaverse/kana": {
+	"id": "github/kanaverse/kana",
+	"title": "github/kanaverse/kana",
+	"url": " https://rseng.github.io/software/repository/github/kanaverse/kana",
+	"content": "Single cell analysis in the browser"
 	},
-	"github/MeasureTransport/MParT": {
-	"id": "github/MeasureTransport/MParT",
-	"title": "github/MeasureTransport/MParT",
-	"url": " https://rseng.github.io/software/repository/github/MeasureTransport/MParT",
-	"content": "Monotone Parameterization Toolkit (MParT): A core library for constructing and using transport maps."
+	"github/pypeit/PypeIt": {
+	"id": "github/pypeit/PypeIt",
+	"title": "github/pypeit/PypeIt",
+	"url": " https://rseng.github.io/software/repository/github/pypeit/PypeIt",
+	"content": "The Python Spectroscopic Data Reduction Pipeline"
 	},
-	"github/LSARP/ProteomicsQC": {
-	"id": "github/LSARP/ProteomicsQC",
-	"title": "github/LSARP/ProteomicsQC",
-	"url": " https://rseng.github.io/software/repository/github/LSARP/ProteomicsQC",
-	"content": "Quality Control Pipeline Server for quantitative Proteomics"
+	"github/lab-medvedeva/GADES-main": {
+	"id": "github/lab-medvedeva/GADES-main",
+	"title": "github/lab-medvedeva/GADES-main",
+	"url": " https://rseng.github.io/software/repository/github/lab-medvedeva/GADES-main",
+	"content": "None"
 	},
-	"github/candYgene/abg-ld": {
-	"id": "github/candYgene/abg-ld",
-	"title": "github/candYgene/abg-ld",
-	"url": " https://rseng.github.io/software/repository/github/candYgene/abg-ld",
-	"content": "Linked Data Platform for Animal Breeding &amp; Genomics"
+	"github/yuhaoran/CUBE": {
+	"id": "github/yuhaoran/CUBE",
+	"title": "github/yuhaoran/CUBE",
+	"url": " https://rseng.github.io/software/repository/github/yuhaoran/CUBE",
+	"content": "Cosmological N-body simulation code"
 	},
-	"github/candYgene/QTM": {
-	"id": "github/candYgene/QTM",
-	"title": "github/candYgene/QTM",
-	"url": " https://rseng.github.io/software/repository/github/candYgene/QTM",
-	"content": "QTLTableMiner++ tool for mining tables in scientific articles"
+	"github/galtay/urchin": {
+	"id": "github/galtay/urchin",
+	"title": "github/galtay/urchin",
+	"url": " https://rseng.github.io/software/repository/github/galtay/urchin",
+	"content": "Repository for archival storage of Urchin code."
 	},
-	"github/candYgene/pbg-ld": {
-	"id": "github/candYgene/pbg-ld",
-	"title": "github/candYgene/pbg-ld",
-	"url": " https://rseng.github.io/software/repository/github/candYgene/pbg-ld",
-	"content": "Linked Data Platform for Plant Breeding &amp; Genomics"
+	"github/galtay/sphray": {
+	"id": "github/galtay/sphray",
+	"title": "github/galtay/sphray",
+	"url": " https://rseng.github.io/software/repository/github/galtay/sphray",
+	"content": " THIS CODE IS HERE FOR ARCHIVAL PURPOSES AND IS NOT MAINTAINED"
 	},
-	"github/candYgene/siga": {
-	"id": "github/candYgene/siga",
-	"title": "github/candYgene/siga",
-	"url": " https://rseng.github.io/software/repository/github/candYgene/siga",
-	"content": "Semantically Interoperable Genome Annotations"
+	"github/giuspugl/picasso": {
+	"id": "github/giuspugl/picasso",
+	"title": "github/giuspugl/picasso",
+	"url": " https://rseng.github.io/software/repository/github/giuspugl/picasso",
+	"content": "Inpainter for point-sources for Synchrotron and Dust polarization "
 	},
-	"github/vishwas1984/LaplaceInterpolation.jl": {
-	"id": "github/vishwas1984/LaplaceInterpolation.jl",
-	"title": "github/vishwas1984/LaplaceInterpolation.jl",
-	"url": " https://rseng.github.io/software/repository/github/vishwas1984/LaplaceInterpolation.jl",
+	"github/giuspugl/fgcluster": {
+	"id": "github/giuspugl/fgcluster",
+	"title": "github/giuspugl/fgcluster",
+	"url": " https://rseng.github.io/software/repository/github/giuspugl/fgcluster",
 	"content": "None"
 	},
-	"github/kd0kfo/cosmology": {
-	"id": "github/kd0kfo/cosmology",
-	"title": "github/kd0kfo/cosmology",
-	"url": " https://rseng.github.io/software/repository/github/kd0kfo/cosmology",
-	"content": "Applications to simulate gravitational lensing, through ray tracing and shear calculation. See http://research.davecoss.com for more details."
-	},
-	"github/SandoghdarLab/PiSCAT": {
-	"id": "github/SandoghdarLab/PiSCAT",
-	"title": "github/SandoghdarLab/PiSCAT",
-	"url": " https://rseng.github.io/software/repository/github/SandoghdarLab/PiSCAT",
-	"content": "PiSCAT is a python-based package with a graphical user interface for performing high-performance analysis on a variety of iSCAT measurements."
-	},
-	"github/barricklab/pLannotate": {
-	"id": "github/barricklab/pLannotate",
-	"title": "github/barricklab/pLannotate",
-	"url": " https://rseng.github.io/software/repository/github/barricklab/pLannotate",
-	"content": "Webserver and command line tool for annotating engineered plasmids"
+	"github/giuspugl/MCMole3D": {
+	"id": "github/giuspugl/MCMole3D",
+	"title": "github/giuspugl/MCMole3D",
+	"url": " https://rseng.github.io/software/repository/github/giuspugl/MCMole3D",
+	"content": "MonteCarlo Molecular Line Emission 3d.Statistical Model for Galactic Molecular Clouds. For documentation please visit"
 	},
-	"github/dgarrimar/sqtlseeker2-nf": {
-	"id": "github/dgarrimar/sqtlseeker2-nf",
-	"title": "github/dgarrimar/sqtlseeker2-nf",
-	"url": " https://rseng.github.io/software/repository/github/dgarrimar/sqtlseeker2-nf",
-	"content": "An automated sQTL mapping pipeline using Nextflow"
+	"github/Zilong-Li/PCAone": {
+	"id": "github/Zilong-Li/PCAone",
+	"title": "github/Zilong-Li/PCAone",
+	"url": " https://rseng.github.io/software/repository/github/Zilong-Li/PCAone",
+	"content": "Principal Component Analysis All in One"
 	},
-	"github/radio-astro-tools/pvextractor": {
-	"id": "github/radio-astro-tools/pvextractor",
-	"title": "github/radio-astro-tools/pvextractor",
-	"url": " https://rseng.github.io/software/repository/github/radio-astro-tools/pvextractor",
-	"content": "Position-Velocity diagram extract (but it can slice out other things too)"
+	"github/webbjj/m2mcluster": {
+	"id": "github/webbjj/m2mcluster",
+	"title": "github/webbjj/m2mcluster",
+	"url": " https://rseng.github.io/software/repository/github/webbjj/m2mcluster",
+	"content": "A code for made to measure modelling of star clusters"
 	},
-	"github/radio-astro-tools/spectral-cube": {
-	"id": "github/radio-astro-tools/spectral-cube",
-	"title": "github/radio-astro-tools/spectral-cube",
-	"url": " https://rseng.github.io/software/repository/github/radio-astro-tools/spectral-cube",
-	"content": "Library for reading and analyzing astrophysical spectral data cubes"
+	"github/webbjj/clustertools": {
+	"id": "github/webbjj/clustertools",
+	"title": "github/webbjj/clustertools",
+	"url": " https://rseng.github.io/software/repository/github/webbjj/clustertools",
+	"content": "A Python package with tools for analysing star clusters."
 	},
-	"github/radio-astro-tools/uvcombine": {
-	"id": "github/radio-astro-tools/uvcombine",
-	"title": "github/radio-astro-tools/uvcombine",
-	"url": " https://rseng.github.io/software/repository/github/radio-astro-tools/uvcombine",
-	"content": "Combine images made with different resolutions, including the &#34;feathering&#34; technique for interferometry data."
+	"github/GeminiDRSoftware/DRAGONS": {
+	"id": "github/GeminiDRSoftware/DRAGONS",
+	"title": "github/GeminiDRSoftware/DRAGONS",
+	"url": " https://rseng.github.io/software/repository/github/GeminiDRSoftware/DRAGONS",
+	"content": "Data Reduction for Astronomy from Gemini Observatory North and South"
 	},
-	"github/SimonPfeifer/cows": {
-	"id": "github/SimonPfeifer/cows",
-	"title": "github/SimonPfeifer/cows",
-	"url": " https://rseng.github.io/software/repository/github/SimonPfeifer/cows",
+	"github/pyBRAvo/pyBRAvo": {
+	"id": "github/pyBRAvo/pyBRAvo",
+	"title": "github/pyBRAvo/pyBRAvo",
+	"url": " https://rseng.github.io/software/repository/github/pyBRAvo/pyBRAvo",
 	"content": "None"
 	},
-	"github/thraraujo/pysymmpol": {
-	"id": "github/thraraujo/pysymmpol",
-	"title": "github/thraraujo/pysymmpol",
-	"url": " https://rseng.github.io/software/repository/github/thraraujo/pysymmpol",
-	"content": "A Python package for calculating and performing basic manipulations on symmetric polynomials."
+	"github/dutilh/CAT": {
+	"id": "github/dutilh/CAT",
+	"title": "github/dutilh/CAT",
+	"url": " https://rseng.github.io/software/repository/github/dutilh/CAT",
+	"content": "CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)"
 	},
-	"github/javicarron/pynkowski": {
-	"id": "github/javicarron/pynkowski",
-	"title": "github/javicarron/pynkowski",
-	"url": " https://rseng.github.io/software/repository/github/javicarron/pynkowski",
-	"content": "Pynkowski is a Python package to compute Minkowski Functionals, as well as their expected values for different fields."
+	"github/akcochrane/TEfits": {
+	"id": "github/akcochrane/TEfits",
+	"title": "github/akcochrane/TEfits",
+	"url": " https://rseng.github.io/software/repository/github/akcochrane/TEfits",
+	"content": "R package for streamlined nonlinear regression"
 	},
-	"github/javicarron/mtneedlet": {
-	"id": "github/javicarron/mtneedlet",
-	"title": "github/javicarron/mtneedlet",
-	"url": " https://rseng.github.io/software/repository/github/javicarron/mtneedlet",
-	"content": "This is a Python Package aimed at the use of needlets to filter spherical maps, detecting the maxima within the maps and analysing them using a multiple testing approach."
+	"github/AnthonyOfSeattle/pyAscoreValidation": {
+	"id": "github/AnthonyOfSeattle/pyAscoreValidation",
+	"title": "github/AnthonyOfSeattle/pyAscoreValidation",
+	"url": " https://rseng.github.io/software/repository/github/AnthonyOfSeattle/pyAscoreValidation",
+	"content": "Validation experiments for the pyAscore python package."
 	},
-	"github/21cmFAST/21cmFAST": {
-	"id": "github/21cmFAST/21cmFAST",
-	"title": "github/21cmFAST/21cmFAST",
-	"url": " https://rseng.github.io/software/repository/github/21cmFAST/21cmFAST",
-	"content": "Official repository for 21cmFAST: a code for generating fast simulations of the cosmological 21cm signal"
+	"github/GalletFlorian/TATOO": {
+	"id": "github/GalletFlorian/TATOO",
+	"title": "github/GalletFlorian/TATOO",
+	"url": " https://rseng.github.io/software/repository/github/GalletFlorian/TATOO",
+	"content": "Tidal-chronology Age TOOl"
 	},
-	"github/shikhar249/OnionMHC": {
-	"id": "github/shikhar249/OnionMHC",
-	"title": "github/shikhar249/OnionMHC",
-	"url": " https://rseng.github.io/software/repository/github/shikhar249/OnionMHC",
-	"content": "None"
+	"github/xfangcosmo/FFTLog-and-beyond": {
+	"id": "github/xfangcosmo/FFTLog-and-beyond",
+	"title": "github/xfangcosmo/FFTLog-and-beyond",
+	"url": " https://rseng.github.io/software/repository/github/xfangcosmo/FFTLog-and-beyond",
+	"content": "An FFTLog code for efficiently computing integrals containing 1 spherical Bessel function or Bessel function or its 1st/2nd derivative."
 	},
-	"github/netsiphd/netrd": {
-	"id": "github/netsiphd/netrd",
-	"title": "github/netsiphd/netrd",
-	"url": " https://rseng.github.io/software/repository/github/netsiphd/netrd",
-	"content": "A library for network {reconstruction, distances, dynamics}"
+	"github/xfangcosmo/2DFFTLog": {
+	"id": "github/xfangcosmo/2DFFTLog",
+	"title": "github/xfangcosmo/2DFFTLog",
+	"url": " https://rseng.github.io/software/repository/github/xfangcosmo/2DFFTLog",
+	"content": "2DFFTLog for Covariances from Fourier Space to Real Space"
 	},
-	"github/amusecode/TRES": {
-	"id": "github/amusecode/TRES",
-	"title": "github/amusecode/TRES",
-	"url": " https://rseng.github.io/software/repository/github/amusecode/TRES",
-	"content": "TRiple Evolution Simulation package"
+	"github/sidchaini/DistClassiPy": {
+	"id": "github/sidchaini/DistClassiPy",
+	"title": "github/sidchaini/DistClassiPy",
+	"url": " https://rseng.github.io/software/repository/github/sidchaini/DistClassiPy",
+	"content": "A python package for a distance-based classifier which can use several different distance metrics."
 	},
-	"github/amusecode/amuse": {
-	"id": "github/amusecode/amuse",
-	"title": "github/amusecode/amuse",
-	"url": " https://rseng.github.io/software/repository/github/amusecode/amuse",
-	"content": "Astrophysical Multipurpose Software Environment. This is the main repository  for AMUSE"
+	"github/calebclass/Shiny-NanoTube": {
+	"id": "github/calebclass/Shiny-NanoTube",
+	"title": "github/calebclass/Shiny-NanoTube",
+	"url": " https://rseng.github.io/software/repository/github/calebclass/Shiny-NanoTube",
+	"content": "A web app for easier NanoString gene expression analysis"
 	},
-	"github/Yomguithereal/talisman": {
-	"id": "github/Yomguithereal/talisman",
-	"title": "github/Yomguithereal/talisman",
-	"url": " https://rseng.github.io/software/repository/github/Yomguithereal/talisman",
-	"content": "Straightforward fuzzy matching, information retrieval and NLP building blocks for JavaScript."
+	"github/willvousden/ptemcee": {
+	"id": "github/willvousden/ptemcee",
+	"title": "github/willvousden/ptemcee",
+	"url": " https://rseng.github.io/software/repository/github/willvousden/ptemcee",
+	"content": "A parallel-tempered version of emcee."
 	},
-	"github/alphapsa/PIPE": {
-	"id": "github/alphapsa/PIPE",
-	"title": "github/alphapsa/PIPE",
-	"url": " https://rseng.github.io/software/repository/github/alphapsa/PIPE",
-	"content": "PSF Imagette Photometric Extraction - PSF photometry for CHEOPS data"
+	"github/schlafly/crowdsource": {
+	"id": "github/schlafly/crowdsource",
+	"title": "github/schlafly/crowdsource",
+	"url": " https://rseng.github.io/software/repository/github/schlafly/crowdsource",
+	"content": "Crowded field photometry pipeline"
 	},
-	"github/cl3425/Clairvoyance": {
-	"id": "github/cl3425/Clairvoyance",
-	"title": "github/cl3425/Clairvoyance",
-	"url": " https://rseng.github.io/software/repository/github/cl3425/Clairvoyance",
-	"content": "Predicting multiple-planet systems for TESS"
+	"github/tommyau/bamclipper": {
+	"id": "github/tommyau/bamclipper",
+	"title": "github/tommyau/bamclipper",
+	"url": " https://rseng.github.io/software/repository/github/tommyau/bamclipper",
+	"content": "Remove primer sequence from BAM alignments by soft-clipping"
 	},
-	"github/JuliaHCI/ADI.jl": {
-	"id": "github/JuliaHCI/ADI.jl",
-	"title": "github/JuliaHCI/ADI.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaHCI/ADI.jl",
-	"content": "Algorithms for performing angular differential imaging (ADI)"
+	"github/RudolfCardinal/camcops": {
+	"id": "github/RudolfCardinal/camcops",
+	"title": "github/RudolfCardinal/camcops",
+	"url": " https://rseng.github.io/software/repository/github/RudolfCardinal/camcops",
+	"content": "Cambridge Cognitive and Psychiatric Test Kit (CamCOPS)"
 	},
-	"github/OwenWard/ppdiag": {
-	"id": "github/OwenWard/ppdiag",
-	"title": "github/OwenWard/ppdiag",
-	"url": " https://rseng.github.io/software/repository/github/OwenWard/ppdiag",
-	"content": "None"
+	"github/jradcliffe5/multi_self_cal": {
+	"id": "github/jradcliffe5/multi_self_cal",
+	"title": "github/jradcliffe5/multi_self_cal",
+	"url": " https://rseng.github.io/software/repository/github/jradcliffe5/multi_self_cal",
+	"content": "Multi-Source Self-Calibration is a Parseltongue (Kettenis et al. 2012) script which provides an extra calibration for VLBI data sets that image multiple target source within one observation. More information is in the README &amp; paper Radcliffe et. al 2016. If you use this script please reference Radcliffe et al. 2016 which is the paper that accompanies this release."
 	},
-	"github/daiqile96/OTTERS_paper": {
-	"id": "github/daiqile96/OTTERS_paper",
-	"title": "github/daiqile96/OTTERS_paper",
-	"url": " https://rseng.github.io/software/repository/github/daiqile96/OTTERS_paper",
-	"content": "None"
+	"github/yesint/EnCurv": {
+	"id": "github/yesint/EnCurv",
+	"title": "github/yesint/EnCurv",
+	"url": " https://rseng.github.io/software/repository/github/yesint/EnCurv",
+	"content": "Tools for maintaining predefined membrane curvature in MD simulations"
 	},
-	"github/klee/klee": {
-	"id": "github/klee/klee",
-	"title": "github/klee/klee",
-	"url": " https://rseng.github.io/software/repository/github/klee/klee",
-	"content": "KLEE Symbolic Execution Engine"
+	"github/AdmiralenOla/Scoary": {
+	"id": "github/AdmiralenOla/Scoary",
+	"title": "github/AdmiralenOla/Scoary",
+	"url": " https://rseng.github.io/software/repository/github/AdmiralenOla/Scoary",
+	"content": "Pan-genome wide association studies"
 	},
-	"github/medvedevgroup/varmatch": {
-	"id": "github/medvedevgroup/varmatch",
-	"title": "github/medvedevgroup/varmatch",
-	"url": " https://rseng.github.io/software/repository/github/medvedevgroup/varmatch",
-	"content": "robust matching of small variant datasets using flexible scoring schemes"
+	"github/haoharryfeng/NeuCA": {
+	"id": "github/haoharryfeng/NeuCA",
+	"title": "github/haoharryfeng/NeuCA",
+	"url": " https://rseng.github.io/software/repository/github/haoharryfeng/NeuCA",
+	"content": "Neural-network based Cell Annotation tool"
 	},
-	"github/medvedevgroup/TwoPaCo": {
-	"id": "github/medvedevgroup/TwoPaCo",
-	"title": "github/medvedevgroup/TwoPaCo",
-	"url": " https://rseng.github.io/software/repository/github/medvedevgroup/TwoPaCo",
-	"content": "A fast constructor of the compressed de Bruijn graph from many genomes"
+	"github/damcb/tyssue": {
+	"id": "github/damcb/tyssue",
+	"title": "github/damcb/tyssue",
+	"url": " https://rseng.github.io/software/repository/github/damcb/tyssue",
+	"content": "An epithelium simulation library"
 	},
-	"github/SDXorg/pysd": {
-	"id": "github/SDXorg/pysd",
-	"title": "github/SDXorg/pysd",
-	"url": " https://rseng.github.io/software/repository/github/SDXorg/pysd",
-	"content": "System Dynamics Modeling in Python"
+	"github/vidakris/flatwrm": {
+	"id": "github/vidakris/flatwrm",
+	"title": "github/vidakris/flatwrm",
+	"url": " https://rseng.github.io/software/repository/github/vidakris/flatwrm",
+	"content": "Python-based machine learning code for detecting and analyzing flares"
 	},
-	"github/COSMIC-PopSynth/COSMIC": {
-	"id": "github/COSMIC-PopSynth/COSMIC",
-	"title": "github/COSMIC-PopSynth/COSMIC",
-	"url": " https://rseng.github.io/software/repository/github/COSMIC-PopSynth/COSMIC",
-	"content": "COSMIC (Compact Object Synthesis and Monte Carlo Investigation Code)"
+	"github/daehwankimlab/hisat2": {
+	"id": "github/daehwankimlab/hisat2",
+	"title": "github/daehwankimlab/hisat2",
+	"url": " https://rseng.github.io/software/repository/github/daehwankimlab/hisat2",
+	"content": "Graph-based alignment (Hierarchical Graph FM index)"
 	},
-	"github/cython/cython": {
-	"id": "github/cython/cython",
-	"title": "github/cython/cython",
-	"url": " https://rseng.github.io/software/repository/github/cython/cython",
-	"content": "The most widely used Python to C compiler"
+	"github/LondonBiofoundry/basicsynbio": {
+	"id": "github/LondonBiofoundry/basicsynbio",
+	"title": "github/LondonBiofoundry/basicsynbio",
+	"url": " https://rseng.github.io/software/repository/github/LondonBiofoundry/basicsynbio",
+	"content": "An open-source Python package to facilitate BASIC DNA Assembly workflows"
 	},
-	"github/EmmanuelSchaan/LensQuEst": {
-	"id": "github/EmmanuelSchaan/LensQuEst",
-	"title": "github/EmmanuelSchaan/LensQuEst",
-	"url": " https://rseng.github.io/software/repository/github/EmmanuelSchaan/LensQuEst",
-	"content": "CMB lensing: standard quadratic estimator, shear and magnification (https://arxiv.org/abs/1804.06403)."
+	"github/dipto4/falcon_dm": {
+	"id": "github/dipto4/falcon_dm",
+	"title": "github/dipto4/falcon_dm",
+	"url": " https://rseng.github.io/software/repository/github/dipto4/falcon_dm",
+	"content": "Codebase for Falcon-DM: N-body code specifically tuned for simulating intermediate mass ratio inspirals in DM spikes. "
 	},
-	"github/EmmanuelSchaan/LaSSI": {
-	"id": "github/EmmanuelSchaan/LaSSI",
-	"title": "github/EmmanuelSchaan/LaSSI",
-	"url": " https://rseng.github.io/software/repository/github/EmmanuelSchaan/LaSSI",
-	"content": "Lightweight Fisher forecast for LSS."
+	"github/ccsosa/GOCompare": {
+	"id": "github/ccsosa/GOCompare",
+	"title": "github/ccsosa/GOCompare",
+	"url": " https://rseng.github.io/software/repository/github/ccsosa/GOCompare",
+	"content": "This is an R package designed to analyze functional enrichment results between two species (A list of genes and their orthologues)"
 	},
-	"github/EmmanuelSchaan/ThumbStack": {
-	"id": "github/EmmanuelSchaan/ThumbStack",
-	"title": "github/EmmanuelSchaan/ThumbStack",
-	"url": " https://rseng.github.io/software/repository/github/EmmanuelSchaan/ThumbStack",
+	"github/stermzsofi/TiDE": {
+	"id": "github/stermzsofi/TiDE",
+	"title": "github/stermzsofi/TiDE",
+	"url": " https://rseng.github.io/software/repository/github/stermzsofi/TiDE",
 	"content": "None"
 	},
-	"github/EmmanuelSchaan/HaloGen": {
-	"id": "github/EmmanuelSchaan/HaloGen",
-	"title": "github/EmmanuelSchaan/HaloGen",
-	"url": " https://rseng.github.io/software/repository/github/EmmanuelSchaan/HaloGen",
-	"content": "Modular halo model code for matter, galaxies, lensing, tSZ and CIB."
+	"github/eweitz/ideogram": {
+	"id": "github/eweitz/ideogram",
+	"title": "github/eweitz/ideogram",
+	"url": " https://rseng.github.io/software/repository/github/eweitz/ideogram",
+	"content": "Chromosome visualization for the web"
 	},
-	"github/zarr-developers/zarr-python": {
-	"id": "github/zarr-developers/zarr-python",
-	"title": "github/zarr-developers/zarr-python",
-	"url": " https://rseng.github.io/software/repository/github/zarr-developers/zarr-python",
-	"content": "An implementation of chunked, compressed, N-dimensional arrays for Python."
+	"github/OpenDA-Association/OpenDA": {
+	"id": "github/OpenDA-Association/OpenDA",
+	"title": "github/OpenDA-Association/OpenDA",
+	"url": " https://rseng.github.io/software/repository/github/OpenDA-Association/OpenDA",
+	"content": "Open data assimilation toolbox"
 	},
-	"github/YuRui8879/MRASleepNet": {
-	"id": "github/YuRui8879/MRASleepNet",
-	"title": "github/YuRui8879/MRASleepNet",
-	"url": " https://rseng.github.io/software/repository/github/YuRui8879/MRASleepNet",
+	"github/nivha/three_body_integration": {
+	"id": "github/nivha/three_body_integration",
+	"title": "github/nivha/three_body_integration",
+	"url": " https://rseng.github.io/software/repository/github/nivha/three_body_integration",
 	"content": "None"
 	},
-	"github/thejackal360/OpenPelt-Public": {
-	"id": "github/thejackal360/OpenPelt-Public",
-	"title": "github/thejackal360/OpenPelt-Public",
-	"url": " https://rseng.github.io/software/repository/github/thejackal360/OpenPelt-Public",
-	"content": "None"
+	"github/miriamkw/GluPredKit": {
+	"id": "github/miriamkw/GluPredKit",
+	"title": "github/miriamkw/GluPredKit",
+	"url": " https://rseng.github.io/software/repository/github/miriamkw/GluPredKit",
+	"content": "GluPredKit aims to make blood glucose model training and prediction more accessible. "
 	},
-	"github/q1cui/discourseGT": {
-	"id": "github/q1cui/discourseGT",
-	"title": "github/q1cui/discourseGT",
-	"url": " https://rseng.github.io/software/repository/github/q1cui/discourseGT",
-	"content": "discourseGT — Analyze Group Patterns using Graph Theory in Educational Settings"
+	"github/TomWagg/cogsworth": {
+	"id": "github/TomWagg/cogsworth",
+	"title": "github/TomWagg/cogsworth",
+	"url": " https://rseng.github.io/software/repository/github/TomWagg/cogsworth",
+	"content": "A Python package for performing self-consistent population synthesis and galactic dynamics simulations"
 	},
-	"github/ocean-eddy-cpt/gcm-filters": {
-	"id": "github/ocean-eddy-cpt/gcm-filters",
-	"title": "github/ocean-eddy-cpt/gcm-filters",
-	"url": " https://rseng.github.io/software/repository/github/ocean-eddy-cpt/gcm-filters",
-	"content": "Diffusion-based Spatial Filtering of Gridded Data"
+	"github/OpenEnergyPlatform/open-MaStR": {
+	"id": "github/OpenEnergyPlatform/open-MaStR",
+	"title": "github/OpenEnergyPlatform/open-MaStR",
+	"url": " https://rseng.github.io/software/repository/github/OpenEnergyPlatform/open-MaStR",
+	"content": "A collaborative software to download the energy database Marktstammdatenregister (MaStR)"
 	},
-	"github/PDBeurope/pdb-images": {
-	"id": "github/PDBeurope/pdb-images",
-	"title": "github/PDBeurope/pdb-images",
-	"url": " https://rseng.github.io/software/repository/github/PDBeurope/pdb-images",
-	"content": "Generates images from mmCIF/BCIF files"
+	"github/gausspy/gausspy": {
+	"id": "github/gausspy/gausspy",
+	"title": "github/gausspy/gausspy",
+	"url": " https://rseng.github.io/software/repository/github/gausspy/gausspy",
+	"content": "GaussPy: Python tool for implementing Autonomous Gaussian Decomposition"
+	},
+	"github/anuradhawick/LRBinner": {
+	"id": "github/anuradhawick/LRBinner",
+	"title": "github/anuradhawick/LRBinner",
+	"url": " https://rseng.github.io/software/repository/github/anuradhawick/LRBinner",
+	"content": "LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB."
+	},
+	"github/jgagneastro/CoMover": {
+	"id": "github/jgagneastro/CoMover",
+	"title": "github/jgagneastro/CoMover",
+	"url": " https://rseng.github.io/software/repository/github/jgagneastro/CoMover",
+	"content": "None"
+	},
+	"github/PaulMcMillan-Astro/GalPot": {
+	"id": "github/PaulMcMillan-Astro/GalPot",
+	"title": "github/PaulMcMillan-Astro/GalPot",
+	"url": " https://rseng.github.io/software/repository/github/PaulMcMillan-Astro/GalPot",
+	"content": "A stand-alone version of Dehnen&#39;s GalaxyPotential code."
 	},
-	"github/containers/podman": {
-	"id": "github/containers/podman",
-	"title": "github/containers/podman",
-	"url": " https://rseng.github.io/software/repository/github/containers/podman",
-	"content": "Podman: A tool for managing OCI containers and pods"
+	"github/PaulMcMillan-Astro/Torus": {
+	"id": "github/PaulMcMillan-Astro/Torus",
+	"title": "github/PaulMcMillan-Astro/Torus",
+	"url": " https://rseng.github.io/software/repository/github/PaulMcMillan-Astro/Torus",
+	"content": "Torus Code"
 	},
-	"github/samuelefiorini/tangle": {
-	"id": "github/samuelefiorini/tangle",
-	"title": "github/samuelefiorini/tangle",
-	"url": " https://rseng.github.io/software/repository/github/samuelefiorini/tangle",
-	"content": "TANGLE: Time spAN Guided neuraL attEntion model"
+	"github/matthiasfabry/spinOS": {
+	"id": "github/matthiasfabry/spinOS",
+	"title": "github/matthiasfabry/spinOS",
+	"url": " https://rseng.github.io/software/repository/github/matthiasfabry/spinOS",
+	"content": "SPectroscopic and Interferometric Orbital Solution finder"
 	},
-	"github/ndaniel/fusioncatcher": {
-	"id": "github/ndaniel/fusioncatcher",
-	"title": "github/ndaniel/fusioncatcher",
-	"url": " https://rseng.github.io/software/repository/github/ndaniel/fusioncatcher",
-	"content": "Finder of Somatic Fusion Genes in RNA-seq data"
+	"github/jdswinbank/Comet": {
+	"id": "github/jdswinbank/Comet",
+	"title": "github/jdswinbank/Comet",
+	"url": " https://rseng.github.io/software/repository/github/jdswinbank/Comet",
+	"content": "A complete VOEvent transport system"
 	},
-	"github/ChileanVirtualObservatory/indexing_utfsm": {
-	"id": "github/ChileanVirtualObservatory/indexing_utfsm",
-	"title": "github/ChileanVirtualObservatory/indexing_utfsm",
-	"url": " https://rseng.github.io/software/repository/github/ChileanVirtualObservatory/indexing_utfsm",
-	"content": "R implementation of RoiSE algorithm"
+	"github/creaneroDIAS/beamModelTester": {
+	"id": "github/creaneroDIAS/beamModelTester",
+	"title": "github/creaneroDIAS/beamModelTester",
+	"url": " https://rseng.github.io/software/repository/github/creaneroDIAS/beamModelTester",
+	"content": "a general-purpose tool for evaluation of models of radio telescope beams."
 	},
-	"github/nworbde/dStar": {
-	"id": "github/nworbde/dStar",
-	"title": "github/nworbde/dStar",
-	"url": " https://rseng.github.io/software/repository/github/nworbde/dStar",
-	"content": "routines for computing neutron star structure and evolution"
+	"github/andymummeryastro/tidalspin": {
+	"id": "github/andymummeryastro/tidalspin",
+	"title": "github/andymummeryastro/tidalspin",
+	"url": " https://rseng.github.io/software/repository/github/andymummeryastro/tidalspin",
+	"content": "Python package for constraining black hole spins using the properties of relativistic tidal forces"
 	},
-	"github/CMakePP/CMinx": {
-	"id": "github/CMakePP/CMinx",
-	"title": "github/CMakePP/CMinx",
-	"url": " https://rseng.github.io/software/repository/github/CMakePP/CMinx",
-	"content": "Generates API documentation for CMake functions and macros"
+	"github/dgrin1/axionCAMB": {
+	"id": "github/dgrin1/axionCAMB",
+	"title": "github/dgrin1/axionCAMB",
+	"url": " https://rseng.github.io/software/repository/github/dgrin1/axionCAMB",
+	"content": "None"
 	},
-	"github/CMakePP/CMakePPLang": {
-	"id": "github/CMakePP/CMakePPLang",
-	"title": "github/CMakePP/CMakePPLang",
-	"url": " https://rseng.github.io/software/repository/github/CMakePP/CMakePPLang",
-	"content": "Object-oriented extension to the CMake language."
+	"github/gerthmicha/wolbachia-mlst": {
+	"id": "github/gerthmicha/wolbachia-mlst",
+	"title": "github/gerthmicha/wolbachia-mlst",
+	"url": " https://rseng.github.io/software/repository/github/gerthmicha/wolbachia-mlst",
+	"content": "Data from Bleidorn &amp; Gerth (2017) A critical re-evaluation of multilocus sequence typing (MLST) efforts in Wolbachia. https://doi.org/10.1093/femsec/fix163"
 	},
-	"github/kkjawz/coref-ee": {
-	"id": "github/kkjawz/coref-ee",
-	"title": "github/kkjawz/coref-ee",
-	"url": " https://rseng.github.io/software/repository/github/kkjawz/coref-ee",
-	"content": "Coreference Resolution With Entity Equalization"
+	"github/HHTpy/HHTpywrapper": {
+	"id": "github/HHTpy/HHTpywrapper",
+	"title": "github/HHTpy/HHTpywrapper",
+	"url": " https://rseng.github.io/software/repository/github/HHTpy/HHTpywrapper",
+	"content": "Python Wrapper for Hilbert–Huang Transform MATLAB Package"
 	},
-	"github/oncoray/mirp": {
-	"id": "github/oncoray/mirp",
-	"title": "github/oncoray/mirp",
-	"url": " https://rseng.github.io/software/repository/github/oncoray/mirp",
-	"content": "Medical Image Radiomics Processor"
+	"github/kblin/ncbi-acc-download": {
+	"id": "github/kblin/ncbi-acc-download",
+	"title": "github/kblin/ncbi-acc-download",
+	"url": " https://rseng.github.io/software/repository/github/kblin/ncbi-acc-download",
+	"content": "Download files from NCBI Entrez by accession"
 	},
-	"github/cistrome/MIRA": {
-	"id": "github/cistrome/MIRA",
-	"title": "github/cistrome/MIRA",
-	"url": " https://rseng.github.io/software/repository/github/cistrome/MIRA",
-	"content": "Python package for analysis of multiomic single cell RNA-seq and ATAC-seq."
+	"github/yiling0210/APIR": {
+	"id": "github/yiling0210/APIR",
+	"title": "github/yiling0210/APIR",
+	"url": " https://rseng.github.io/software/repository/github/yiling0210/APIR",
+	"content": "None"
 	},
-	"github/chakrah/sage": {
-	"id": "github/chakrah/sage",
-	"title": "github/chakrah/sage",
-	"url": " https://rseng.github.io/software/repository/github/chakrah/sage",
-	"content": "This code creates the stellar activity grid for exoplanets"
+	"github/viash-io/viash": {
+	"id": "github/viash-io/viash",
+	"title": "github/viash-io/viash",
+	"url": " https://rseng.github.io/software/repository/github/viash-io/viash",
+	"content": "script + metadata = standalone component"
 	},
-	"github/AstrobioMike/GToTree": {
-	"id": "github/AstrobioMike/GToTree",
-	"title": "github/AstrobioMike/GToTree",
-	"url": " https://rseng.github.io/software/repository/github/AstrobioMike/GToTree",
-	"content": "A user-friendly workflow for phylogenomics"
+	"github/mbejger/polgraw-allsky": {
+	"id": "github/mbejger/polgraw-allsky",
+	"title": "github/mbejger/polgraw-allsky",
+	"url": " https://rseng.github.io/software/repository/github/mbejger/polgraw-allsky",
+	"content": "All-sky search code (Polgraw group)"
 	},
-	"github/radicamc/exoTEDRF": {
-	"id": "github/radicamc/exoTEDRF",
-	"title": "github/radicamc/exoTEDRF",
-	"url": " https://rseng.github.io/software/repository/github/radicamc/exoTEDRF",
-	"content": "Tools for end-to-end reduction of JWST exoplanet observations"
+	"github/YosefLab/scvi-tools": {
+	"id": "github/YosefLab/scvi-tools",
+	"title": "github/YosefLab/scvi-tools",
+	"url": " https://rseng.github.io/software/repository/github/YosefLab/scvi-tools",
+	"content": "Deep probabilistic analysis of single-cell omics data"
 	},
-	"github/statOmics/tradeSeqPaper": {
-	"id": "github/statOmics/tradeSeqPaper",
-	"title": "github/statOmics/tradeSeqPaper",
-	"url": " https://rseng.github.io/software/repository/github/statOmics/tradeSeqPaper",
-	"content": "Scripts to reproduce analyses of tradeSeq paper."
+	"github/DrexelLenser/Lenser": {
+	"id": "github/DrexelLenser/Lenser",
+	"title": "github/DrexelLenser/Lenser",
+	"url": " https://rseng.github.io/software/repository/github/DrexelLenser/Lenser",
+	"content": "A tool for measuring weak gravitational flexion"
 	},
-	"github/statOmics/satuRnPaper": {
-	"id": "github/statOmics/satuRnPaper",
-	"title": "github/statOmics/satuRnPaper",
-	"url": " https://rseng.github.io/software/repository/github/statOmics/satuRnPaper",
-	"content": "Github repository associated with the publication of *satuRn: Scalable Analysis of Differential Transcript Usage for Bulk and Single-cell RNA-sequencing Applications*"
+	"github/UM-Bridge/umbridge": {
+	"id": "github/UM-Bridge/umbridge",
+	"title": "github/UM-Bridge/umbridge",
+	"url": " https://rseng.github.io/software/repository/github/UM-Bridge/umbridge",
+	"content": "None"
 	},
-	"github/brainglobe/bg-atlasapi": {
-	"id": "github/brainglobe/bg-atlasapi",
-	"title": "github/brainglobe/bg-atlasapi",
-	"url": " https://rseng.github.io/software/repository/github/brainglobe/bg-atlasapi",
-	"content": "A lightweight python module to interact with atlases for systems neuroscience"
+	"github/B-UMMI/chewBBACA": {
+	"id": "github/B-UMMI/chewBBACA",
+	"title": "github/B-UMMI/chewBBACA",
+	"url": " https://rseng.github.io/software/repository/github/B-UMMI/chewBBACA",
+	"content": "A complete suite for gene-by-gene schema creation and strain identification."
 	},
-	"github/pavanvyn/triple-stability": {
-	"id": "github/pavanvyn/triple-stability",
-	"title": "github/pavanvyn/triple-stability",
-	"url": " https://rseng.github.io/software/repository/github/pavanvyn/triple-stability",
-	"content": "Code to check if a given configuration of a triple-star system is dynamically stable"
+	"github/phineasng/DECODE": {
+	"id": "github/phineasng/DECODE",
+	"title": "github/phineasng/DECODE",
+	"url": " https://rseng.github.io/software/repository/github/phineasng/DECODE",
+	"content": "Code Release for the DECODE submission (ISMB2022)"
 	},
-	"github/DGtal-team/DGtal": {
-	"id": "github/DGtal-team/DGtal",
-	"title": "github/DGtal-team/DGtal",
-	"url": " https://rseng.github.io/software/repository/github/DGtal-team/DGtal",
-	"content": "Digital Geometry Tools and Algorithm Library"
+	"github/Gabaldonlab/crossmapper": {
+	"id": "github/Gabaldonlab/crossmapper",
+	"title": "github/Gabaldonlab/crossmapper",
+	"url": " https://rseng.github.io/software/repository/github/Gabaldonlab/crossmapper",
+	"content": "Crossmapper software"
 	},
-	"github/ScialdoneLab/MitoHEAR": {
-	"id": "github/ScialdoneLab/MitoHEAR",
-	"title": "github/ScialdoneLab/MitoHEAR",
-	"url": " https://rseng.github.io/software/repository/github/ScialdoneLab/MitoHEAR",
-	"content": "MitoHEAR (Mitochondrial HEteroplasmy AnalyzeR) is an R package that allows the estimation as well as downstream statistical analysis of the mtDNA heteroplasmy calculated from single-cell datasets."
+	"github/Gabaldonlab/perSVade": {
+	"id": "github/Gabaldonlab/perSVade",
+	"title": "github/Gabaldonlab/perSVade",
+	"url": " https://rseng.github.io/software/repository/github/Gabaldonlab/perSVade",
+	"content": "perSVade: personalized Structural Variation detection"
 	},
-	"github/LMJL-Alea/ktest": {
-	"id": "github/LMJL-Alea/ktest",
-	"title": "github/LMJL-Alea/ktest",
-	"url": " https://rseng.github.io/software/repository/github/LMJL-Alea/ktest",
-	"content": "None"
+	"github/Gabaldonlab/karyon": {
+	"id": "github/Gabaldonlab/karyon",
+	"title": "github/Gabaldonlab/karyon",
+	"url": " https://rseng.github.io/software/repository/github/Gabaldonlab/karyon",
+	"content": "This is the Karyon Pipeline"
 	},
-	"github/zhongqiu1245/CCS-Net": {
-	"id": "github/zhongqiu1245/CCS-Net",
-	"title": "github/zhongqiu1245/CCS-Net",
-	"url": " https://rseng.github.io/software/repository/github/zhongqiu1245/CCS-Net",
-	"content": "None"
+	"github/Gabaldonlab/jloh": {
+	"id": "github/Gabaldonlab/jloh",
+	"title": "github/Gabaldonlab/jloh",
+	"url": " https://rseng.github.io/software/repository/github/Gabaldonlab/jloh",
+	"content": "A tool to extract LOH blocks from VCF, BAM and FASTA data"
 	},
-	"github/torognes/vsearch": {
-	"id": "github/torognes/vsearch",
-	"title": "github/torognes/vsearch",
-	"url": " https://rseng.github.io/software/repository/github/torognes/vsearch",
-	"content": "Versatile open-source tool for microbiome analysis"
+	"github/PathwayCommons/grounding-search": {
+	"id": "github/PathwayCommons/grounding-search",
+	"title": "github/PathwayCommons/grounding-search",
+	"url": " https://rseng.github.io/software/repository/github/PathwayCommons/grounding-search",
+	"content": "A biological entity grounding search service "
 	},
-	"github/torognes/swarm": {
-	"id": "github/torognes/swarm",
-	"title": "github/torognes/swarm",
-	"url": " https://rseng.github.io/software/repository/github/torognes/swarm",
-	"content": "A robust and fast clustering method for amplicon-based studies"
+	"github/pavanvidem/chira": {
+	"id": "github/pavanvidem/chira",
+	"title": "github/pavanvidem/chira",
+	"url": " https://rseng.github.io/software/repository/github/pavanvidem/chira",
+	"content": "Chimeric Read Annotator"
 	},
-	"github/davidebolo1993/VISOR": {
-	"id": "github/davidebolo1993/VISOR",
-	"title": "github/davidebolo1993/VISOR",
-	"url": " https://rseng.github.io/software/repository/github/davidebolo1993/VISOR",
-	"content": "VarIant SimulatOR for short, long and linked reads"
+	"github/MBoemo/DNAscent": {
+	"id": "github/MBoemo/DNAscent",
+	"title": "github/MBoemo/DNAscent",
+	"url": " https://rseng.github.io/software/repository/github/MBoemo/DNAscent",
+	"content": "Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads."
 	},
-	"github/davidebolo1993/TRiCoLOR": {
-	"id": "github/davidebolo1993/TRiCoLOR",
-	"title": "github/davidebolo1993/TRiCoLOR",
-	"url": " https://rseng.github.io/software/repository/github/davidebolo1993/TRiCoLOR",
-	"content": "Tadem Repeats Caller for LOng Reads"
+	"github/c-zhou/yahs": {
+	"id": "github/c-zhou/yahs",
+	"title": "github/c-zhou/yahs",
+	"url": " https://rseng.github.io/software/repository/github/c-zhou/yahs",
+	"content": "Yet another Hi-C scaffolding tool"
 	},
-	"github/DeepRank/pssmgen": {
-	"id": "github/DeepRank/pssmgen",
-	"title": "github/DeepRank/pssmgen",
-	"url": " https://rseng.github.io/software/repository/github/DeepRank/pssmgen",
-	"content": "Generates consistent PSSM and/or PDB files for protein-protein complexes"
+	"github/cuDisc/cuDisc": {
+	"id": "github/cuDisc/cuDisc",
+	"title": "github/cuDisc/cuDisc",
+	"url": " https://rseng.github.io/software/repository/github/cuDisc/cuDisc",
+	"content": "A CUDA-accelerated 2D code for protoplanetary disc evolution simulations"
 	},
-	"github/DeepRank/iScore": {
-	"id": "github/DeepRank/iScore",
-	"title": "github/DeepRank/iScore",
-	"url": " https://rseng.github.io/software/repository/github/DeepRank/iScore",
-	"content": "iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines"
+	"github/CrowdTruth/CrowdTruth": {
+	"id": "github/CrowdTruth/CrowdTruth",
+	"title": "github/CrowdTruth/CrowdTruth",
+	"url": " https://rseng.github.io/software/repository/github/CrowdTruth/CrowdTruth",
+	"content": "Version 1.0 of the CrowdTruth Framework for crowdsourcing ground truth data, for training and evaluation of cognitive computing systems. Check out also version 2.0 at https://github.com/CrowdTruth/CrowdTruth-core. Data collected with CrowdTruth methodology: http://data.crowdtruth.org/. Our papers: http://crowdtruth.org/papers/"
 	},
-	"github/DeepRank/deeprank": {
-	"id": "github/DeepRank/deeprank",
-	"title": "github/DeepRank/deeprank",
-	"url": " https://rseng.github.io/software/repository/github/DeepRank/deeprank",
-	"content": "Deep learning framework for data mining protein-protein interactions using CNN"
+	"github/mriener/gausspyplus": {
+	"id": "github/mriener/gausspyplus",
+	"title": "github/mriener/gausspyplus",
+	"url": " https://rseng.github.io/software/repository/github/mriener/gausspyplus",
+	"content": "Fully automated Gaussian decomposition package for emission line spectra"
 	},
-	"github/DeepRank/pdb2sql": {
-	"id": "github/DeepRank/pdb2sql",
-	"title": "github/DeepRank/pdb2sql",
-	"url": " https://rseng.github.io/software/repository/github/DeepRank/pdb2sql",
-	"content": "Fast and versatile biomolecular structure PDB file parser using SQL queries"
+	"github/amerand/SPIPS": {
+	"id": "github/amerand/SPIPS",
+	"title": "github/amerand/SPIPS",
+	"url": " https://rseng.github.io/software/repository/github/amerand/SPIPS",
+	"content": "Spectro-Photo-Interferometry of Pulsating Stars"
 	},
-	"github/DeepRank/deeprank-core": {
-	"id": "github/DeepRank/deeprank-core",
-	"title": "github/DeepRank/deeprank-core",
-	"url": " https://rseng.github.io/software/repository/github/DeepRank/deeprank-core",
-	"content": "None"
+	"github/amerand/PMOIRED": {
+	"id": "github/amerand/PMOIRED",
+	"title": "github/amerand/PMOIRED",
+	"url": " https://rseng.github.io/software/repository/github/amerand/PMOIRED",
+	"content": "Display and fit Optical (spectro-)Interferometric OIFITS data "
 	},
-	"github/DeepRank/DeepRank-GNN": {
-	"id": "github/DeepRank/DeepRank-GNN",
-	"title": "github/DeepRank/DeepRank-GNN",
-	"url": " https://rseng.github.io/software/repository/github/DeepRank/DeepRank-GNN",
-	"content": "Graph Network for protein-protein interface"
+	"github/amerand/CANDID": {
+	"id": "github/amerand/CANDID",
+	"title": "github/amerand/CANDID",
+	"url": " https://rseng.github.io/software/repository/github/amerand/CANDID",
+	"content": "Companion Analysis and Non-Detection in Interferometric Data"
 	},
-	"github/heracles-ec/heracles": {
-	"id": "github/heracles-ec/heracles",
-	"title": "github/heracles-ec/heracles",
-	"url": " https://rseng.github.io/software/repository/github/heracles-ec/heracles",
-	"content": "Harmonic-space statistics on the sphere"
+	"github/teuben/nemo": {
+	"id": "github/teuben/nemo",
+	"title": "github/teuben/nemo",
+	"url": " https://rseng.github.io/software/repository/github/teuben/nemo",
+	"content": "a Stellar Dynamics Toolbox (Not Everybody Must Observe)"
 	},
-	"github/spjuhel/BoARIO": {
-	"id": "github/spjuhel/BoARIO",
-	"title": "github/spjuhel/BoARIO",
-	"url": " https://rseng.github.io/software/repository/github/spjuhel/BoARIO",
-	"content": "Python implementation of ARIO model"
+	"github/teuben/QAC": {
+	"id": "github/teuben/QAC",
+	"title": "github/teuben/QAC",
+	"url": " https://rseng.github.io/software/repository/github/teuben/QAC",
+	"content": "Quick Array Combinations:  front end to CASA to run tp2vis, feather and various array combination methods"
 	},
-	"github/sstadick/perbase": {
-	"id": "github/sstadick/perbase",
-	"title": "github/sstadick/perbase",
-	"url": " https://rseng.github.io/software/repository/github/sstadick/perbase",
-	"content": "Per-base per-nucleotide depth analysis"
+	"github/teuben/DataComb": {
+	"id": "github/teuben/DataComb",
+	"title": "github/teuben/DataComb",
+	"url": " https://rseng.github.io/software/repository/github/teuben/DataComb",
+	"content": "Code for the DataComb paper"
 	},
-	"github/SandyYuan/s3PCF": {
-	"id": "github/SandyYuan/s3PCF",
-	"title": "github/SandyYuan/s3PCF",
-	"url": " https://rseng.github.io/software/repository/github/SandyYuan/s3PCF",
-	"content": "squeezed 3PCF package"
+	"github/scikit-tda/DREiMac": {
+	"id": "github/scikit-tda/DREiMac",
+	"title": "github/scikit-tda/DREiMac",
+	"url": " https://rseng.github.io/software/repository/github/scikit-tda/DREiMac",
+	"content": "Dimensionality Reduction with Eilenberg-MacLane Coordinates"
 	},
-	"github/SandyYuan/GRAND-HOD": {
-	"id": "github/SandyYuan/GRAND-HOD",
-	"title": "github/SandyYuan/GRAND-HOD",
-	"url": " https://rseng.github.io/software/repository/github/SandyYuan/GRAND-HOD",
-	"content": "A decorated HOD code in Python that is differentiable and incorporates various generalizations to the standard HOD."
+	"github/jackmwolf/tehtuner": {
+	"id": "github/jackmwolf/tehtuner",
+	"title": "github/jackmwolf/tehtuner",
+	"url": " https://rseng.github.io/software/repository/github/jackmwolf/tehtuner",
+	"content": "An R Package to Fit and Tune to Models to Detect Treatment Effect Heterogeneity "
 	},
-	"github/LuisScoccola/persistable": {
-	"id": "github/LuisScoccola/persistable",
-	"title": "github/LuisScoccola/persistable",
-	"url": " https://rseng.github.io/software/repository/github/LuisScoccola/persistable",
-	"content": "density-based clustering for exploratory data analysis based on multi-parameter persistence"
+	"github/thomgrand/fim-python": {
+	"id": "github/thomgrand/fim-python",
+	"title": "github/thomgrand/fim-python",
+	"url": " https://rseng.github.io/software/repository/github/thomgrand/fim-python",
+	"content": "This repository implements the Fast Iterative Method (FIM) for use in python"
 	},
-	"github/zenitani/OpenMHD": {
-	"id": "github/zenitani/OpenMHD",
-	"title": "github/zenitani/OpenMHD",
-	"url": " https://rseng.github.io/software/repository/github/zenitani/OpenMHD",
-	"content": "None"
+	"github/jls713/tact": {
+	"id": "github/jls713/tact",
+	"title": "github/jls713/tact",
+	"url": " https://rseng.github.io/software/repository/github/jls713/tact",
+	"content": "action, angle and frequency estimation using various methods"
 	},
-	"github/annagraff/densify": {
-	"id": "github/annagraff/densify",
-	"title": "github/annagraff/densify",
-	"url": " https://rseng.github.io/software/repository/github/annagraff/densify",
-	"content": "None"
+	"github/junkoda/sidm-nbody": {
+	"id": "github/junkoda/sidm-nbody",
+	"title": "github/junkoda/sidm-nbody",
+	"url": " https://rseng.github.io/software/repository/github/junkoda/sidm-nbody",
+	"content": "Monte Carlo N-body Simulation for Self-Interacting Dark Matter"
 	},
-	"github/timothydmorton/isochrones": {
-	"id": "github/timothydmorton/isochrones",
-	"title": "github/timothydmorton/isochrones",
-	"url": " https://rseng.github.io/software/repository/github/timothydmorton/isochrones",
-	"content": "Pythonic stellar model grid access; easy MCMC fitting of stellar properties"
+	"github/junkoda/cola_halo": {
+	"id": "github/junkoda/cola_halo",
+	"title": "github/junkoda/cola_halo",
+	"url": " https://rseng.github.io/software/repository/github/junkoda/cola_halo",
+	"content": "Parallel COLA cosmological simulation + 2LPT initial condition generator + FoF halo finder"
 	},
-	"github/timothydmorton/vespa": {
-	"id": "github/timothydmorton/vespa",
-	"title": "github/timothydmorton/vespa",
-	"url": " https://rseng.github.io/software/repository/github/timothydmorton/vespa",
-	"content": "Validation of Exoplanet Signals using a Probabilistic Algorithm--- calculating false positive probabilities for transit signals"
+	"github/DrMarc/slab": {
+	"id": "github/DrMarc/slab",
+	"title": "github/DrMarc/slab",
+	"url": " https://rseng.github.io/software/repository/github/DrMarc/slab",
+	"content": "python classes for working with sounds and conducting psychoacoustic  experiments"
 	},
-	"github/pudu-py/pudu": {
-	"id": "github/pudu-py/pudu",
-	"title": "github/pudu-py/pudu",
-	"url": " https://rseng.github.io/software/repository/github/pudu-py/pudu",
-	"content": "A Python library for explainability of machine learinng algorithms in an agnostic, deterministic, and simple way."
+	"github/pmlmodelling/nctoolkit": {
+	"id": "github/pmlmodelling/nctoolkit",
+	"title": "github/pmlmodelling/nctoolkit",
+	"url": " https://rseng.github.io/software/repository/github/pmlmodelling/nctoolkit",
+	"content": "A Python package for netCDF analysis and post-processing"
 	},
-	"github/rudeboybert/forestecology": {
-	"id": "github/rudeboybert/forestecology",
-	"title": "github/rudeboybert/forestecology",
-	"url": " https://rseng.github.io/software/repository/github/rudeboybert/forestecology",
-	"content": "forestecology R package of Methods and Data for Forest Ecology Model Fitting and Assessment"
+	"github/nutjunkie/IQmol": {
+	"id": "github/nutjunkie/IQmol",
+	"title": "github/nutjunkie/IQmol",
+	"url": " https://rseng.github.io/software/repository/github/nutjunkie/IQmol",
+	"content": "IQmol is an open source molecular editor and visualization package"
 	},
-	"github/johnschwenck/bp": {
-	"id": "github/johnschwenck/bp",
-	"title": "github/johnschwenck/bp",
-	"url": " https://rseng.github.io/software/repository/github/johnschwenck/bp",
-	"content": "An R package for analyzing blood pressure data"
+	"github/Ashod/garli": {
+	"id": "github/Ashod/garli",
+	"title": "github/Ashod/garli",
+	"url": " https://rseng.github.io/software/repository/github/Ashod/garli",
+	"content": "Phylogenetic analysis of molecular sequence data using the maximum-likelihood criterion"
 	},
-	"github/fairdataihub/SPARClink": {
-	"id": "github/fairdataihub/SPARClink",
-	"title": "github/fairdataihub/SPARClink",
-	"url": " https://rseng.github.io/software/repository/github/fairdataihub/SPARClink",
-	"content": "SPARClink: Visualizing the Impact of SPARC"
+	"github/oorb/oorb": {
+	"id": "github/oorb/oorb",
+	"title": "github/oorb/oorb",
+	"url": " https://rseng.github.io/software/repository/github/oorb/oorb",
+	"content": "An open-source orbit-computation package for Solar System objects."
 	},
-	"github/damar-wicaksono/uqtestfuns": {
-	"id": "github/damar-wicaksono/uqtestfuns",
-	"title": "github/damar-wicaksono/uqtestfuns",
-	"url": " https://rseng.github.io/software/repository/github/damar-wicaksono/uqtestfuns",
-	"content": "A Python3 library of test functions from the uncertainty quantification community with a common interface for validation and benchmarking purposes."
+	"github/Lyalpha/spalipy": {
+	"id": "github/Lyalpha/spalipy",
+	"title": "github/Lyalpha/spalipy",
+	"url": " https://rseng.github.io/software/repository/github/Lyalpha/spalipy",
+	"content": "Detection-based astronomical image registration."
 	},
-	"github/MyWebIntelligence/MyWebIntelligencePython": {
-	"id": "github/MyWebIntelligence/MyWebIntelligencePython",
-	"title": "github/MyWebIntelligence/MyWebIntelligencePython",
-	"url": " https://rseng.github.io/software/repository/github/MyWebIntelligence/MyWebIntelligencePython",
-	"content": "Class Python App of My Web Intelligence"
+	"github/amiralih/MembraneAnalysis.jl": {
+	"id": "github/amiralih/MembraneAnalysis.jl",
+	"title": "github/amiralih/MembraneAnalysis.jl",
+	"url": " https://rseng.github.io/software/repository/github/amiralih/MembraneAnalysis.jl",
+	"content": "A package for analyzing molecular dynamics simulations of lipid membranes"
 	},
-	"github/bonsai-team/matam": {
-	"id": "github/bonsai-team/matam",
-	"title": "github/bonsai-team/matam",
-	"url": " https://rseng.github.io/software/repository/github/bonsai-team/matam",
-	"content": "Mapping-Assisted Targeted-Assembly for Metagenomics"
+	"github/nuc-astro/winnet": {
+	"id": "github/nuc-astro/winnet",
+	"title": "github/nuc-astro/winnet",
+	"url": " https://rseng.github.io/software/repository/github/nuc-astro/winnet",
+	"content": "The WinNet nuclear reaction network"
 	},
-	"github/bonsai-team/Porechop_ABI": {
-	"id": "github/bonsai-team/Porechop_ABI",
-	"title": "github/bonsai-team/Porechop_ABI",
-	"url": " https://rseng.github.io/software/repository/github/bonsai-team/Porechop_ABI",
-	"content": "Adapter trimmer for Oxford Nanopore reads using ab initio method"
+	"github/thomasorb/orcs": {
+	"id": "github/thomasorb/orcs",
+	"title": "github/thomasorb/orcs",
+	"url": " https://rseng.github.io/software/repository/github/thomasorb/orcs",
+	"content": "ORCS is an analysis engine for SITELLE spectral cubes."
 	},
-	"github/ZacharyJia/opsdn": {
-	"id": "github/ZacharyJia/opsdn",
-	"title": "github/ZacharyJia/opsdn",
-	"url": " https://rseng.github.io/software/repository/github/ZacharyJia/opsdn",
-	"content": "None"
+	"github/thomasorb/orbs": {
+	"id": "github/thomasorb/orbs",
+	"title": "github/thomasorb/orbs",
+	"url": " https://rseng.github.io/software/repository/github/thomasorb/orbs",
+	"content": "ORBS is the data reduction pipeline for SITELLE"
 	},
-	"github/sjbeckett/localcovid19now": {
-	"id": "github/sjbeckett/localcovid19now",
-	"title": "github/sjbeckett/localcovid19now",
-	"url": " https://rseng.github.io/software/repository/github/sjbeckett/localcovid19now",
-	"content": "processing and mapping COVID-19 case data at subnational scales"
+	"github/ericmandel/funtools": {
+	"id": "github/ericmandel/funtools",
+	"title": "github/ericmandel/funtools",
+	"url": " https://rseng.github.io/software/repository/github/ericmandel/funtools",
+	"content": "a &#34;minimal buy-in&#34; FITS library and utility package for astronomical data analysis"
 	},
-	"github/daddeptr/Needlets": {
-	"id": "github/daddeptr/Needlets",
-	"title": "github/daddeptr/Needlets",
-	"url": " https://rseng.github.io/software/repository/github/daddeptr/Needlets",
+	"github/fchuffar/protopackage": {
+	"id": "github/fchuffar/protopackage",
+	"title": "github/fchuffar/protopackage",
+	"url": " https://rseng.github.io/software/repository/github/fchuffar/protopackage",
 	"content": "None"
 	},
-	"github/CompNet/Renard": {
-	"id": "github/CompNet/Renard",
-	"title": "github/CompNet/Renard",
-	"url": " https://rseng.github.io/software/repository/github/CompNet/Renard",
-	"content": "Relationships Extraction from NARrative Documents"
+	"github/fchuffar/epimedtools": {
+	"id": "github/fchuffar/epimedtools",
+	"title": "github/fchuffar/epimedtools",
+	"url": " https://rseng.github.io/software/repository/github/fchuffar/epimedtools",
+	"content": "A package allowing multi-omics analysis using R"
 	},
-	"github/algolab/shark": {
-	"id": "github/algolab/shark",
-	"title": "github/algolab/shark",
-	"url": " https://rseng.github.io/software/repository/github/algolab/shark",
-	"content": "Mapping-free software for fishing relevant reads in an RNA-Seq sample"
+	"github/fchuffar/dmethr": {
+	"id": "github/fchuffar/dmethr",
+	"title": "github/fchuffar/dmethr",
+	"url": " https://rseng.github.io/software/repository/github/fchuffar/dmethr",
+	"content": "DNA Methylation repression of transcriptional activity"
 	},
-	"github/2decomp-fft/2decomp-fft": {
-	"id": "github/2decomp-fft/2decomp-fft",
-	"title": "github/2decomp-fft/2decomp-fft",
-	"url": " https://rseng.github.io/software/repository/github/2decomp-fft/2decomp-fft",
-	"content": "The 2DECOMP&amp;FFT library provides access to a slabs and pencil decompositions as well as FFTs. "
+	"github/Bishop-Laboratory/RLoop-QC-Meta-Analysis-Miller-2022": {
+	"id": "github/Bishop-Laboratory/RLoop-QC-Meta-Analysis-Miller-2022",
+	"title": "github/Bishop-Laboratory/RLoop-QC-Meta-Analysis-Miller-2022",
+	"url": " https://rseng.github.io/software/repository/github/Bishop-Laboratory/RLoop-QC-Meta-Analysis-Miller-2022",
+	"content": "Generates figures for &#34;Quality-controlled R-loop meta-analysis reveals the characteristics of R-loop consensus regions&#34;"
 	},
-	"github/qboxcode/qbox-public": {
-	"id": "github/qboxcode/qbox-public",
-	"title": "github/qboxcode/qbox-public",
-	"url": " https://rseng.github.io/software/repository/github/qboxcode/qbox-public",
-	"content": "Qbox public repository"
+	"github/zd1/telseq": {
+	"id": "github/zd1/telseq",
+	"title": "github/zd1/telseq",
+	"url": " https://rseng.github.io/software/repository/github/zd1/telseq",
+	"content": "A software for calculating telomere length"
 	},
-	"github/ferdymercury/amide": {
-	"id": "github/ferdymercury/amide",
-	"title": "github/ferdymercury/amide",
-	"url": " https://rseng.github.io/software/repository/github/ferdymercury/amide",
-	"content": "AMIDE: a Medical Imaging Data Examiner"
+	"github/SAIL-Labs/AMICAL": {
+	"id": "github/SAIL-Labs/AMICAL",
+	"title": "github/SAIL-Labs/AMICAL",
+	"url": " https://rseng.github.io/software/repository/github/SAIL-Labs/AMICAL",
+	"content": "Extraction pipeline and analysis tools for Aperture Masking Interferometry mode of the last generation of instruments (ground-based and space)."
 	},
-	"github/WGS-TB/MentaLiST": {
-	"id": "github/WGS-TB/MentaLiST",
-	"title": "github/WGS-TB/MentaLiST",
-	"url": " https://rseng.github.io/software/repository/github/WGS-TB/MentaLiST",
-	"content": "The MLST pipeline developed by the PathOGiST research group"
+	"github/kristiantcho/flashcurve": {
+	"id": "github/kristiantcho/flashcurve",
+	"title": "github/kristiantcho/flashcurve",
+	"url": " https://rseng.github.io/software/repository/github/kristiantcho/flashcurve",
+	"content": "A python tool for the fast generation of adaptive-binning for lightcurves with Fermi-LAT gamma-ray data using machine learning"
 	},
-	"github/noraeisner/LATTE": {
-	"id": "github/noraeisner/LATTE",
-	"title": "github/noraeisner/LATTE",
-	"url": " https://rseng.github.io/software/repository/github/noraeisner/LATTE",
-	"content": "Lightcurve Analysis Tool for Transiting Exoplanet"
+	"github/HofstadterTools/HofstadterTools": {
+	"id": "github/HofstadterTools/HofstadterTools",
+	"title": "github/HofstadterTools/HofstadterTools",
+	"url": " https://rseng.github.io/software/repository/github/HofstadterTools/HofstadterTools",
+	"content": "A Python package for analyzing the Hofstadter model."
 	},
-	"github/yymao/abundancematching": {
-	"id": "github/yymao/abundancematching",
-	"title": "github/yymao/abundancematching",
-	"url": " https://rseng.github.io/software/repository/github/yymao/abundancematching",
-	"content": "A Python package for subhalo abundance matching (SHAM) with scatter."
+	"github/pokynmr/ipick": {
+	"id": "github/pokynmr/ipick",
+	"title": "github/pokynmr/ipick",
+	"url": " https://rseng.github.io/software/repository/github/pokynmr/ipick",
+	"content": "Multiprocessing Peak Picking Software for UCSF NMR Spectra"
 	},
-	"github/C2SM-RCM/emiproc": {
-	"id": "github/C2SM-RCM/emiproc",
-	"title": "github/C2SM-RCM/emiproc",
-	"url": " https://rseng.github.io/software/repository/github/C2SM-RCM/emiproc",
-	"content": "Preprocessing of emissions: from any inventory to any model"
+	"github/gwastro/pycbc": {
+	"id": "github/gwastro/pycbc",
+	"title": "github/gwastro/pycbc",
+	"url": " https://rseng.github.io/software/repository/github/gwastro/pycbc",
+	"content": "Core package to analyze gravitational-wave data, find signals, and study their parameters. This package was used in the first direct detection of gravitational waves (GW150914), and is used in the ongoing analysis of LIGO/Virgo data.  "
 	},
-	"github/Caltech-IPAC/Montage": {
-	"id": "github/Caltech-IPAC/Montage",
-	"title": "github/Caltech-IPAC/Montage",
-	"url": " https://rseng.github.io/software/repository/github/Caltech-IPAC/Montage",
-	"content": "Image Mosaics for Astronomers"
+	"github/KarrLab/de_sim": {
+	"id": "github/KarrLab/de_sim",
+	"title": "github/KarrLab/de_sim",
+	"url": " https://rseng.github.io/software/repository/github/KarrLab/de_sim",
+	"content": "Python-based object-oriented discrete-event simulation tool for complex, data-driven modeling"
 	},
-	"github/Caltech-IPAC/kete": {
-	"id": "github/Caltech-IPAC/kete",
-	"title": "github/Caltech-IPAC/kete",
-	"url": " https://rseng.github.io/software/repository/github/Caltech-IPAC/kete",
-	"content": "Kete Solar System Survey tools"
+	"github/mildpiggy/DEP2": {
+	"id": "github/mildpiggy/DEP2",
+	"title": "github/mildpiggy/DEP2",
+	"url": " https://rseng.github.io/software/repository/github/mildpiggy/DEP2",
+	"content": "An r package for proteomics data Analysis, developed from DEP."
 	},
-	"github/csb5/lofreq": {
-	"id": "github/csb5/lofreq",
-	"title": "github/csb5/lofreq",
-	"url": " https://rseng.github.io/software/repository/github/csb5/lofreq",
-	"content": "LoFreq Star: Sensitive variant calling from sequencing data"
+	"github/astroML/gatspy": {
+	"id": "github/astroML/gatspy",
+	"title": "github/astroML/gatspy",
+	"url": " https://rseng.github.io/software/repository/github/astroML/gatspy",
+	"content": "General tools for Astronomical Time Series in Python"
 	},
-	"github/lutteropp/NetRAX": {
-	"id": "github/lutteropp/NetRAX",
-	"title": "github/lutteropp/NetRAX",
-	"url": " https://rseng.github.io/software/repository/github/lutteropp/NetRAX",
-	"content": "Phylogenetic Network Inference without ILS"
+	"github/EcoJulia/EcologicalNetworks.jl": {
+	"id": "github/EcoJulia/EcologicalNetworks.jl",
+	"title": "github/EcoJulia/EcologicalNetworks.jl",
+	"url": " https://rseng.github.io/software/repository/github/EcoJulia/EcologicalNetworks.jl",
+	"content": "Everything you&#39;ve never dreamed about measuring on ecological networks."
 	},
-	"github/BU-hammerTeam/PyHammer": {
-	"id": "github/BU-hammerTeam/PyHammer",
-	"title": "github/BU-hammerTeam/PyHammer",
-	"url": " https://rseng.github.io/software/repository/github/BU-hammerTeam/PyHammer",
-	"content": "A Python Spectral Typing Suite"
+	"github/EcoJulia/Microbiome.jl": {
+	"id": "github/EcoJulia/Microbiome.jl",
+	"title": "github/EcoJulia/Microbiome.jl",
+	"url": " https://rseng.github.io/software/repository/github/EcoJulia/Microbiome.jl",
+	"content": "For analysis of microbiome and microbial community data"
 	},
-	"github/benyhh/ml-telescope-pointing-correction": {
-	"id": "github/benyhh/ml-telescope-pointing-correction",
-	"title": "github/benyhh/ml-telescope-pointing-correction",
-	"url": " https://rseng.github.io/software/repository/github/benyhh/ml-telescope-pointing-correction",
+	"github/EcoJulia/SimpleSDMLayers.jl": {
+	"id": "github/EcoJulia/SimpleSDMLayers.jl",
+	"title": "github/EcoJulia/SimpleSDMLayers.jl",
+	"url": " https://rseng.github.io/software/repository/github/EcoJulia/SimpleSDMLayers.jl",
+	"content": "Simple layers for species distribution modeling and bioclimatic data"
+	},
+	"github/keckert7/codes": {
+	"id": "github/keckert7/codes",
+	"title": "github/keckert7/codes",
+	"url": " https://rseng.github.io/software/repository/github/keckert7/codes",
 	"content": "None"
 	},
-	"github/anuradhawick/LRBinner": {
-	"id": "github/anuradhawick/LRBinner",
-	"title": "github/anuradhawick/LRBinner",
-	"url": " https://rseng.github.io/software/repository/github/anuradhawick/LRBinner",
-	"content": "LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB."
+	"github/tupui/scipy": {
+	"id": "github/tupui/scipy",
+	"title": "github/tupui/scipy",
+	"url": " https://rseng.github.io/software/repository/github/tupui/scipy",
+	"content": "Scipy library main repository"
 	},
-	"github/jmcbroome/BTE": {
-	"id": "github/jmcbroome/BTE",
-	"title": "github/jmcbroome/BTE",
-	"url": " https://rseng.github.io/software/repository/github/jmcbroome/BTE",
-	"content": "Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit"
+	"github/hrwakeford/ExoTiC-ISM": {
+	"id": "github/hrwakeford/ExoTiC-ISM",
+	"title": "github/hrwakeford/ExoTiC-ISM",
+	"url": " https://rseng.github.io/software/repository/github/hrwakeford/ExoTiC-ISM",
+	"content": "This is a repository for the reduction pipeline detailed in Wakeford, et al., 2016, ApJ. The method implements marginalization across a series of models to represent stochastic models for observatory and instrument systematics. This is primarily for HST WFC3, however, may be extened to STIS in the future. "
 	},
-	"github/dixonlab/hic_breakfinder": {
-	"id": "github/dixonlab/hic_breakfinder",
-	"title": "github/dixonlab/hic_breakfinder",
-	"url": " https://rseng.github.io/software/repository/github/dixonlab/hic_breakfinder",
-	"content": "a framework that integrates optical mapping, high-throughput chromosome conformation capture (Hi-C), and whole genome sequencing to systematically detect SVs in a variety of normal or cancer samples and cell lines."
+	"github/phillippro/agatha": {
+	"id": "github/phillippro/agatha",
+	"title": "github/phillippro/agatha",
+	"url": " https://rseng.github.io/software/repository/github/phillippro/agatha",
+	"content": "Disentangling period signals from correlated noise in a periodogram framework"
 	},
-	"github/JixingGE/GGCHEMPY": {
-	"id": "github/JixingGE/GGCHEMPY",
-	"title": "github/JixingGE/GGCHEMPY",
-	"url": " https://rseng.github.io/software/repository/github/JixingGE/GGCHEMPY",
-	"content": "Gas-grain chemical code for interstellar medium in pure Python"
+	"github/phillippro/pexo": {
+	"id": "github/phillippro/pexo",
+	"title": "github/phillippro/pexo",
+	"url": " https://rseng.github.io/software/repository/github/phillippro/pexo",
+	"content": "a global modeling framework for ns timing, μas astrometry, and μm/s radial velocities"
 	},
-	"github/AstroChem/VISIBLE": {
-	"id": "github/AstroChem/VISIBLE",
-	"title": "github/AstroChem/VISIBLE",
-	"url": " https://rseng.github.io/software/repository/github/AstroChem/VISIBLE",
-	"content": "VISIbility Based Line Extraction"
+	"github/PGB-LIV/MHCVision": {
+	"id": "github/PGB-LIV/MHCVision",
+	"title": "github/PGB-LIV/MHCVision",
+	"url": " https://rseng.github.io/software/repository/github/PGB-LIV/MHCVision",
+	"content": "FDR/PEP estimation for MHC-peptide binding prediction"
 	},
-	"github/theosanderson/chronumental": {
-	"id": "github/theosanderson/chronumental",
-	"title": "github/theosanderson/chronumental",
-	"url": " https://rseng.github.io/software/repository/github/theosanderson/chronumental",
-	"content": "Estimating time trees from very large phylogenies"
+	"github/RoryChenXY/DataRepExp_public": {
+	"id": "github/RoryChenXY/DataRepExp_public",
+	"title": "github/RoryChenXY/DataRepExp_public",
+	"url": " https://rseng.github.io/software/repository/github/RoryChenXY/DataRepExp_public",
+	"content": "A shiny app that was developed to improve the FAIR of research data hosted on data repository."
 	},
-	"github/CityU-AIM-Group/HTD": {
-	"id": "github/CityU-AIM-Group/HTD",
-	"title": "github/CityU-AIM-Group/HTD",
-	"url": " https://rseng.github.io/software/repository/github/CityU-AIM-Group/HTD",
-	"content": "[TIP&#39; 21] HTD: Heterogeneous Task Decoupling for Two-stage Object Detection"
+	"github/rhysf/HaplotypeTools": {
+	"id": "github/rhysf/HaplotypeTools",
+	"title": "github/rhysf/HaplotypeTools",
+	"url": " https://rseng.github.io/software/repository/github/rhysf/HaplotypeTools",
+	"content": "A toolkit for identifying recombination and recombinant genotypes"
 	},
-	"github/ropenscilabs/r2readthedocs": {
-	"id": "github/ropenscilabs/r2readthedocs",
-	"title": "github/ropenscilabs/r2readthedocs",
-	"url": " https://rseng.github.io/software/repository/github/ropenscilabs/r2readthedocs",
-	"content": "Convert R package documentation to a &#39;readthedocs&#39; website"
+	"github/egonw/bacting": {
+	"id": "github/egonw/bacting",
+	"title": "github/egonw/bacting",
+	"url": " https://rseng.github.io/software/repository/github/egonw/bacting",
+	"content": "Bacting := acting as the Bioclipse TNG"
 	},
-	"github/ropenscilabs/allcontributors": {
-	"id": "github/ropenscilabs/allcontributors",
-	"title": "github/ropenscilabs/allcontributors",
-	"url": " https://rseng.github.io/software/repository/github/ropenscilabs/allcontributors",
-	"content": "all-contributions as an R package"
+	"github/s-abbas/robnptests": {
+	"id": "github/s-abbas/robnptests",
+	"title": "github/s-abbas/robnptests",
+	"url": " https://rseng.github.io/software/repository/github/s-abbas/robnptests",
+	"content": "Robust two-sample tests for the location problem"
 	},
-	"github/ropenscilabs/gendercoder": {
-	"id": "github/ropenscilabs/gendercoder",
-	"title": "github/ropenscilabs/gendercoder",
-	"url": " https://rseng.github.io/software/repository/github/ropenscilabs/gendercoder",
-	"content": "Creating R package to code free text gender responses"
+	"github/bregaldo/pywst": {
+	"id": "github/bregaldo/pywst",
+	"title": "github/bregaldo/pywst",
+	"url": " https://rseng.github.io/software/repository/github/bregaldo/pywst",
+	"content": "Python package for WST and RWST analyses of astrophysical data."
 	},
-	"github/ropenscilabs/qcoder": {
-	"id": "github/ropenscilabs/qcoder",
-	"title": "github/ropenscilabs/qcoder",
-	"url": " https://rseng.github.io/software/repository/github/ropenscilabs/qcoder",
-	"content": "Lightweight package to do qualitative coding"
+	"github/cistrome/MIRA": {
+	"id": "github/cistrome/MIRA",
+	"title": "github/cistrome/MIRA",
+	"url": " https://rseng.github.io/software/repository/github/cistrome/MIRA",
+	"content": "Python package for analysis of multiomic single cell RNA-seq and ATAC-seq."
 	},
-	"github/kendomaniac/docker4seq": {
-	"id": "github/kendomaniac/docker4seq",
-	"title": "github/kendomaniac/docker4seq",
-	"url": " https://rseng.github.io/software/repository/github/kendomaniac/docker4seq",
-	"content": "Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers."
+	"github/lijing28101/maize_pyrpipe": {
+	"id": "github/lijing28101/maize_pyrpipe",
+	"title": "github/lijing28101/maize_pyrpipe",
+	"url": " https://rseng.github.io/software/repository/github/lijing28101/maize_pyrpipe",
+	"content": "None"
 	},
-	"github/kendomaniac/rCASC": {
-	"id": "github/kendomaniac/rCASC",
-	"title": "github/kendomaniac/rCASC",
-	"url": " https://rseng.github.io/software/repository/github/kendomaniac/rCASC",
-	"content": "rCASC: reproducible Classification Analysis of Single Cell Sequencing Data"
+	"github/tahirulqamar/Deep-HPI-pred": {
+	"id": "github/tahirulqamar/Deep-HPI-pred",
+	"title": "github/tahirulqamar/Deep-HPI-pred",
+	"url": " https://rseng.github.io/software/repository/github/tahirulqamar/Deep-HPI-pred",
+	"content": "None"
 	},
-	"github/liangcheng-hrbmu/EnrichDO": {
-	"id": "github/liangcheng-hrbmu/EnrichDO",
-	"title": "github/liangcheng-hrbmu/EnrichDO",
-	"url": " https://rseng.github.io/software/repository/github/liangcheng-hrbmu/EnrichDO",
-	"content": "a Bioinformatics Tool for Annotating and Enrichment Analysis with Disease Ontology"
+	"github/changhoonhahn/provabgs": {
+	"id": "github/changhoonhahn/provabgs",
+	"title": "github/changhoonhahn/provabgs",
+	"url": " https://rseng.github.io/software/repository/github/changhoonhahn/provabgs",
+	"content": "PRObabilistic Value-Added Bright Galaxy Survey (PROVABGS)"
 	},
-	"github/cbalbin-FIU/Epitopedia": {
-	"id": "github/cbalbin-FIU/Epitopedia",
-	"title": "github/cbalbin-FIU/Epitopedia",
-	"url": " https://rseng.github.io/software/repository/github/cbalbin-FIU/Epitopedia",
-	"content": "Epitopedia: identifying molecular mimicry of known immune epitopes"
+	"github/changhoonhahn/haloflow": {
+	"id": "github/changhoonhahn/haloflow",
+	"title": "github/changhoonhahn/haloflow",
+	"url": " https://rseng.github.io/software/repository/github/changhoonhahn/haloflow",
+	"content": "Simulation-Based Inference (SBI) using forward modeled galaxy photometry"
 	},
-	"github/NBISweden/AGAT": {
-	"id": "github/NBISweden/AGAT",
-	"title": "github/NBISweden/AGAT",
-	"url": " https://rseng.github.io/software/repository/github/NBISweden/AGAT",
-	"content": "Another Gtf/Gff Analysis Toolkit"
+	"github/changhoonhahn/pySpectrum": {
+	"id": "github/changhoonhahn/pySpectrum",
+	"title": "github/changhoonhahn/pySpectrum",
+	"url": " https://rseng.github.io/software/repository/github/changhoonhahn/pySpectrum",
+	"content": "python package to measure power spectrum and bispectrum"
 	},
-	"github/hydroframe/hf_hydrodata": {
-	"id": "github/hydroframe/hf_hydrodata",
-	"title": "github/hydroframe/hf_hydrodata",
-	"url": " https://rseng.github.io/software/repository/github/hydroframe/hf_hydrodata",
-	"content": "None"
+	"github/materialsproject/pymatgen-analysis-defects": {
+	"id": "github/materialsproject/pymatgen-analysis-defects",
+	"title": "github/materialsproject/pymatgen-analysis-defects",
+	"url": " https://rseng.github.io/software/repository/github/materialsproject/pymatgen-analysis-defects",
+	"content": "Defect analysis modules for pymatgen"
 	},
-	"github/hydroframe/subsettools": {
-	"id": "github/hydroframe/subsettools",
-	"title": "github/hydroframe/subsettools",
-	"url": " https://rseng.github.io/software/repository/github/hydroframe/subsettools",
-	"content": "Subsetting tools and utilities for ParFlow hydrological modeling"
+	"github/trichter/yam": {
+	"id": "github/trichter/yam",
+	"title": "github/trichter/yam",
+	"url": " https://rseng.github.io/software/repository/github/trichter/yam",
+	"content": "Yet another monitoring tool using correlations of ambient noise"
 	},
-	"github/weizhouUMICH/SAIGE": {
-	"id": "github/weizhouUMICH/SAIGE",
-	"title": "github/weizhouUMICH/SAIGE",
-	"url": " https://rseng.github.io/software/repository/github/weizhouUMICH/SAIGE",
-	"content": "None"
+	"github/pec27/smerfs": {
+	"id": "github/pec27/smerfs",
+	"title": "github/pec27/smerfs",
+	"url": " https://rseng.github.io/software/repository/github/pec27/smerfs",
+	"content": "Creating large realisations of random fields on the sphere"
 	},
-	"github/IonRepo/IonDiff": {
-	"id": "github/IonRepo/IonDiff",
-	"title": "github/IonRepo/IonDiff",
-	"url": " https://rseng.github.io/software/repository/github/IonRepo/IonDiff",
-	"content": "Unsupervised identification and analysis of ion-hopping events in solid state electrolytes."
+	"github/pec27/lizard": {
+	"id": "github/pec27/lizard",
+	"title": "github/pec27/lizard",
+	"url": " https://rseng.github.io/software/repository/github/pec27/lizard",
+	"content": "lizard is an open-source code for the creation of particle initial conditions for cosmological simulations"
 	},
-	"github/TimothyADavis/KinMSpy": {
-	"id": "github/TimothyADavis/KinMSpy",
-	"title": "github/TimothyADavis/KinMSpy",
-	"url": " https://rseng.github.io/software/repository/github/TimothyADavis/KinMSpy",
-	"content": "A Python version of KinMS (github.com/TimothyADavis/KinMS)"
+	"github/pec27/hfof": {
+	"id": "github/pec27/hfof",
+	"title": "github/pec27/hfof",
+	"url": " https://rseng.github.io/software/repository/github/pec27/hfof",
+	"content": "Friends-of-Friends via spatial hashing"
 	},
-	"github/TimothyADavis/GAStimator": {
-	"id": "github/TimothyADavis/GAStimator",
-	"title": "github/TimothyADavis/GAStimator",
-	"url": " https://rseng.github.io/software/repository/github/TimothyADavis/GAStimator",
-	"content": "Implementation of a Python MCMC gibbs-sampler with adaptive stepping"
+	"github/Vini2/GraphBin": {
+	"id": "github/Vini2/GraphBin",
+	"title": "github/Vini2/GraphBin",
+	"url": " https://rseng.github.io/software/repository/github/Vini2/GraphBin",
+	"content": "GraphBin: Refined binning of metagenomic contigs using assembly graphs"
 	},
-	"github/quadram-institute-bioscience/dadaist2": {
-	"id": "github/quadram-institute-bioscience/dadaist2",
-	"title": "github/quadram-institute-bioscience/dadaist2",
-	"url": " https://rseng.github.io/software/repository/github/quadram-institute-bioscience/dadaist2",
-	"content": "🎨 dadaist2 - Highway to R"
+	"github/cmbant/getdist": {
+	"id": "github/cmbant/getdist",
+	"title": "github/cmbant/getdist",
+	"url": " https://rseng.github.io/software/repository/github/cmbant/getdist",
+	"content": "MCMC sample analysis, kernel densities, plotting, and GUI"
 	},
-	"github/BIMSBbioinfo/pigx_rnaseq": {
-	"id": "github/BIMSBbioinfo/pigx_rnaseq",
-	"title": "github/BIMSBbioinfo/pigx_rnaseq",
-	"url": " https://rseng.github.io/software/repository/github/BIMSBbioinfo/pigx_rnaseq",
-	"content": "Pipeline for RNAseq"
+	"github/qMRLab/qMRLab": {
+	"id": "github/qMRLab/qMRLab",
+	"title": "github/qMRLab/qMRLab",
+	"url": " https://rseng.github.io/software/repository/github/qMRLab/qMRLab",
+	"content": "Quantitative Magnetic Resonance Imaging Made Easy with qMRLab: a Software for Data Simulation, Analysis and Visualization"
 	},
-	"github/BIMSBbioinfo/pigx_scrnaseq": {
-	"id": "github/BIMSBbioinfo/pigx_scrnaseq",
-	"title": "github/BIMSBbioinfo/pigx_scrnaseq",
-	"url": " https://rseng.github.io/software/repository/github/BIMSBbioinfo/pigx_scrnaseq",
-	"content": "Pipeline for analysis of Dropseq single cell data"
+	"github/nextgenusfs/amptk": {
+	"id": "github/nextgenusfs/amptk",
+	"title": "github/nextgenusfs/amptk",
+	"url": " https://rseng.github.io/software/repository/github/nextgenusfs/amptk",
+	"content": "AMPtk: Amplicon ToolKit for NGS data (formally UFITS)"
 	},
-	"github/maxmahlke/ssos": {
-	"id": "github/maxmahlke/ssos",
-	"title": "github/maxmahlke/ssos",
-	"url": " https://rseng.github.io/software/repository/github/maxmahlke/ssos",
-	"content": "Pipeline to recover astrometry and photometry of Solar System Objects in imaging surveys"
+	"github/nextgenusfs/funannotate": {
+	"id": "github/nextgenusfs/funannotate",
+	"title": "github/nextgenusfs/funannotate",
+	"url": " https://rseng.github.io/software/repository/github/nextgenusfs/funannotate",
+	"content": "Eukaryotic Genome Annotation Pipeline"
 	},
-	"github/conda/conda-package-handling": {
-	"id": "github/conda/conda-package-handling",
-	"title": "github/conda/conda-package-handling",
-	"url": " https://rseng.github.io/software/repository/github/conda/conda-package-handling",
-	"content": "Create and extract conda packages of various formats"
+	"github/thieu1995/permetrics": {
+	"id": "github/thieu1995/permetrics",
+	"title": "github/thieu1995/permetrics",
+	"url": " https://rseng.github.io/software/repository/github/thieu1995/permetrics",
+	"content": "Artificial intelligence (AI, ML, DL) performance metrics implemented in Python"
 	},
-	"github/conda/pycosat": {
-	"id": "github/conda/pycosat",
-	"title": "github/conda/pycosat",
-	"url": " https://rseng.github.io/software/repository/github/conda/pycosat",
-	"content": "Python bindings to picosat (a SAT solver)"
+	"github/FelixKrueger/TrimGalore": {
+	"id": "github/FelixKrueger/TrimGalore",
+	"title": "github/FelixKrueger/TrimGalore",
+	"url": " https://rseng.github.io/software/repository/github/FelixKrueger/TrimGalore",
+	"content": "A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data"
 	},
-	"github/conda/conda": {
-	"id": "github/conda/conda",
-	"title": "github/conda/conda",
-	"url": " https://rseng.github.io/software/repository/github/conda/conda",
-	"content": "OS-agnostic, system-level binary package manager and ecosystem"
+	"github/cmoestl/3DCORE": {
+	"id": "github/cmoestl/3DCORE",
+	"title": "github/cmoestl/3DCORE",
+	"url": " https://rseng.github.io/software/repository/github/cmoestl/3DCORE",
+	"content": "3D coronal mass ejection flux rope modeling"
 	},
-	"github/diCenzo-GC/Tn-Core-webserver": {
-	"id": "github/diCenzo-GC/Tn-Core-webserver",
-	"title": "github/diCenzo-GC/Tn-Core-webserver",
-	"url": " https://rseng.github.io/software/repository/github/diCenzo-GC/Tn-Core-webserver",
-	"content": "Help files and sample data for the Tn-Core webserver. The code supporting the web server is also included."
+	"github/scipion-em/scipion-em-continuousflex": {
+	"id": "github/scipion-em/scipion-em-continuousflex",
+	"title": "github/scipion-em/scipion-em-continuousflex",
+	"url": " https://rseng.github.io/software/repository/github/scipion-em/scipion-em-continuousflex",
+	"content": "Plugin for continuous conformational flexibility analysis containing HEMNMA, StructMap, HEMNMA-3D and TomoFlow for in vitro and in situ cryo-EM/ET."
 	},
-	"github/benmontet/f3": {
-	"id": "github/benmontet/f3",
-	"title": "github/benmontet/f3",
-	"url": " https://rseng.github.io/software/repository/github/benmontet/f3",
-	"content": "Full Frame Fotometry from the Kepler Full Frame Images"
+	"github/SpaceOdyssey/Blobby3D": {
+	"id": "github/SpaceOdyssey/Blobby3D",
+	"title": "github/SpaceOdyssey/Blobby3D",
+	"url": " https://rseng.github.io/software/repository/github/SpaceOdyssey/Blobby3D",
+	"content": "Blobby3D is a tool to perform Bayesian inference for gas kinematics on emission line observations of galaxies using Integral Field Spectroscopy."
 	},
-	"github/SouthGreenPlatform/PyRice": {
-	"id": "github/SouthGreenPlatform/PyRice",
-	"title": "github/SouthGreenPlatform/PyRice",
-	"url": " https://rseng.github.io/software/repository/github/SouthGreenPlatform/PyRice",
-	"content": "PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a smart query system which fits the computing resources to optimize the query speed."
+	"github/Hoohm/CITE-seq-Count": {
+	"id": "github/Hoohm/CITE-seq-Count",
+	"title": "github/Hoohm/CITE-seq-Count",
+	"url": " https://rseng.github.io/software/repository/github/Hoohm/CITE-seq-Count",
+	"content": "A tool that allows to get UMI counts from a single cell protein assay"
 	},
-	"github/BioinformaticsPlatformWIV-ISP/PACU": {
-	"id": "github/BioinformaticsPlatformWIV-ISP/PACU",
-	"title": "github/BioinformaticsPlatformWIV-ISP/PACU",
-	"url": " https://rseng.github.io/software/repository/github/BioinformaticsPlatformWIV-ISP/PACU",
-	"content": "Workflow for whole genome sequencing based phylogeny of Illumina and ONT R9/R10 data."
+	"github/luizfelippesr/magnetizer": {
+	"id": "github/luizfelippesr/magnetizer",
+	"title": "github/luizfelippesr/magnetizer",
+	"url": " https://rseng.github.io/software/repository/github/luizfelippesr/magnetizer",
+	"content": "Magnetizer - A Fortran code that post-processes the output of a semi-analytic model of galaxy formation and produces a catalogue of galaxies with detailed radial dependent ISM properties, including magnetic fields"
+	},
+	"github/luizfelippesr/galmag": {
+	"id": "github/luizfelippesr/galmag",
+	"title": "github/luizfelippesr/galmag",
+	"url": " https://rseng.github.io/software/repository/github/luizfelippesr/galmag",
+	"content": "GalMag - A Python tool for computing realistic galactic magnetic fields"
+	},
+	"github/cconroy20/alf": {
+	"id": "github/cconroy20/alf",
+	"title": "github/cconroy20/alf",
+	"url": " https://rseng.github.io/software/repository/github/cconroy20/alf",
+	"content": "Absorption Line Fitter"
+	},
+	"github/cconroy20/fsps": {
+	"id": "github/cconroy20/fsps",
+	"title": "github/cconroy20/fsps",
+	"url": " https://rseng.github.io/software/repository/github/cconroy20/fsps",
+	"content": "Flexible Stellar Population Synthesis"
 	},
-	"github/maps-as-data/MapReader": {
-	"id": "github/maps-as-data/MapReader",
-	"title": "github/maps-as-data/MapReader",
-	"url": " https://rseng.github.io/software/repository/github/maps-as-data/MapReader",
-	"content": "A computer vision pipeline for exploring and analyzing images at scale"
+	"github/maximewack/viroCapt": {
+	"id": "github/maximewack/viroCapt",
+	"title": "github/maximewack/viroCapt",
+	"url": " https://rseng.github.io/software/repository/github/maximewack/viroCapt",
+	"content": "None"
 	},
-	"github/mlipatov/paint_atmospheres": {
-	"id": "github/mlipatov/paint_atmospheres",
-	"title": "github/mlipatov/paint_atmospheres",
-	"url": " https://rseng.github.io/software/repository/github/mlipatov/paint_atmospheres",
-	"content": "Synthetic spectra of rotating stars"
+	"github/linbox-team/linbox": {
+	"id": "github/linbox-team/linbox",
+	"title": "github/linbox-team/linbox",
+	"url": " https://rseng.github.io/software/repository/github/linbox-team/linbox",
+	"content": "LinBox - C++ library for exact, high-performance linear algebra "
 	},
-	"github/mgm8/pyngham": {
-	"id": "github/mgm8/pyngham",
-	"title": "github/mgm8/pyngham",
-	"url": " https://rseng.github.io/software/repository/github/mgm8/pyngham",
-	"content": "Python library of the NGHam protocol"
+	"github/econ-ark/HARK": {
+	"id": "github/econ-ark/HARK",
+	"title": "github/econ-ark/HARK",
+	"url": " https://rseng.github.io/software/repository/github/econ-ark/HARK",
+	"content": "Heterogenous Agents Resources &amp; toolKit"
 	},
-	"github/coccoinomane/zelda": {
-	"id": "github/coccoinomane/zelda",
-	"title": "github/coccoinomane/zelda",
-	"url": " https://rseng.github.io/software/repository/github/coccoinomane/zelda",
-	"content": "Tool to generate correlation functions &amp; power spectra from a galaxy catalogue."
+	"github/ydLiu-HIT/deSALT": {
+	"id": "github/ydLiu-HIT/deSALT",
+	"title": "github/ydLiu-HIT/deSALT",
+	"url": " https://rseng.github.io/software/repository/github/ydLiu-HIT/deSALT",
+	"content": "deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads"
 	},
-	"github/coccoinomane/song": {
-	"id": "github/coccoinomane/song",
-	"title": "github/coccoinomane/song",
-	"url": " https://rseng.github.io/software/repository/github/coccoinomane/song",
-	"content": "SONG (Second Order Non-Gaussianity) is a Boltzmann code that computes many observables related to the Cosmic Microwave Background and to the cosmological perturbations at second order in perturbation theory."
+	"github/Nic5472K/ScientificData2021_HealthGym": {
+	"id": "github/Nic5472K/ScientificData2021_HealthGym",
+	"title": "github/Nic5472K/ScientificData2021_HealthGym",
+	"url": " https://rseng.github.io/software/repository/github/Nic5472K/ScientificData2021_HealthGym",
+	"content": "None"
 	},
-	"github/leonzheng2/butterfly": {
-	"id": "github/leonzheng2/butterfly",
-	"title": "github/leonzheng2/butterfly",
-	"url": " https://rseng.github.io/software/repository/github/leonzheng2/butterfly",
+	"github/SPARTA-dev/SPARTA": {
+	"id": "github/SPARTA-dev/SPARTA",
+	"title": "github/SPARTA-dev/SPARTA",
+	"url": " https://rseng.github.io/software/repository/github/SPARTA-dev/SPARTA",
 	"content": "None"
 	},
-	"github/leonzheng2/efficient-butterfly": {
-	"id": "github/leonzheng2/efficient-butterfly",
-	"title": "github/leonzheng2/efficient-butterfly",
-	"url": " https://rseng.github.io/software/repository/github/leonzheng2/efficient-butterfly",
-	"content": "Code for reproducible research - Efficient identification of butterfly sparse matrix factorizations"
+	"github/jtksai/PyCOOL": {
+	"id": "github/jtksai/PyCOOL",
+	"title": "github/jtksai/PyCOOL",
+	"url": " https://rseng.github.io/software/repository/github/jtksai/PyCOOL",
+	"content": "A fast object-oriented Python program that uses symplectic algorithms and GPU(s) to simulate scalar fields in the early universe"
 	},
-	"github/davidhoksza/MolArt": {
-	"id": "github/davidhoksza/MolArt",
-	"title": "github/davidhoksza/MolArt",
-	"url": " https://rseng.github.io/software/repository/github/davidhoksza/MolArt",
-	"content": "MOLeculAR structure annoTator"
+	"github/JohannesBuchner/BXA": {
+	"id": "github/JohannesBuchner/BXA",
+	"title": "github/JohannesBuchner/BXA",
+	"url": " https://rseng.github.io/software/repository/github/JohannesBuchner/BXA",
+	"content": "Bayesian X-ray analysis (nested sampling for Xspec and Sherpa)"
 	},
-	"github/davidhoksza/traveler": {
-	"id": "github/davidhoksza/traveler",
-	"title": "github/davidhoksza/traveler",
-	"url": " https://rseng.github.io/software/repository/github/davidhoksza/traveler",
-	"content": "Template-based RNA secondary structure visualization"
+	"github/JohannesBuchner/PyMultiNest": {
+	"id": "github/JohannesBuchner/PyMultiNest",
+	"title": "github/JohannesBuchner/PyMultiNest",
+	"url": " https://rseng.github.io/software/repository/github/JohannesBuchner/PyMultiNest",
+	"content": "Pythonic Bayesian inference and visualization for the MultiNest Nested Sampling Algorithm and PyCuba&#39;s cubature algorithms."
 	},
-	"github/galtay/sphray": {
-	"id": "github/galtay/sphray",
-	"title": "github/galtay/sphray",
-	"url": " https://rseng.github.io/software/repository/github/galtay/sphray",
-	"content": " THIS CODE IS HERE FOR ARCHIVAL PURPOSES AND IS NOT MAINTAINED"
+	"github/JohannesBuchner/UltraNest": {
+	"id": "github/JohannesBuchner/UltraNest",
+	"title": "github/JohannesBuchner/UltraNest",
+	"url": " https://rseng.github.io/software/repository/github/JohannesBuchner/UltraNest",
+	"content": "Fit and compare complex models reliably and rapidly. Advanced nested sampling."
 	},
-	"github/galtay/urchin": {
-	"id": "github/galtay/urchin",
-	"title": "github/galtay/urchin",
-	"url": " https://rseng.github.io/software/repository/github/galtay/urchin",
-	"content": "Repository for archival storage of Urchin code."
+	"github/JohannesBuchner/nway": {
+	"id": "github/JohannesBuchner/nway",
+	"title": "github/JohannesBuchner/nway",
+	"url": " https://rseng.github.io/software/repository/github/JohannesBuchner/nway",
+	"content": "nway -- Bayesian cross-matching of astronomical catalogues"
 	},
-	"github/Mik3M4n/EF-TIGRE": {
-	"id": "github/Mik3M4n/EF-TIGRE",
-	"title": "github/Mik3M4n/EF-TIGRE",
-	"url": " https://rseng.github.io/software/repository/github/Mik3M4n/EF-TIGRE",
-	"content": "Effective Field Theory of Interacting dark energy with Gravitational REdshift"
+	"github/joshuakt/Oxygen-False-Positives": {
+	"id": "github/joshuakt/Oxygen-False-Positives",
+	"title": "github/joshuakt/Oxygen-False-Positives",
+	"url": " https://rseng.github.io/software/repository/github/joshuakt/Oxygen-False-Positives",
+	"content": "Python source code for planetary evolution model described in Krissansen-Totton et al. (2021; AGU Advances)"
 	},
-	"github/Mik3M4n/BaCoN": {
-	"id": "github/Mik3M4n/BaCoN",
-	"title": "github/Mik3M4n/BaCoN",
-	"url": " https://rseng.github.io/software/repository/github/Mik3M4n/BaCoN",
-	"content": "BAyesian COsmological Network - a bayesian neural network for classification of dark energy/modified gravity power spectra"
+	"github/VasilyKokorev/stardust": {
+	"id": "github/VasilyKokorev/stardust",
+	"title": "github/VasilyKokorev/stardust",
+	"url": " https://rseng.github.io/software/repository/github/VasilyKokorev/stardust",
+	"content": "Stardust - SED fitting code for UV-optical and FIR."
 	},
-	"github/editeodoro/Bbarolo": {
-	"id": "github/editeodoro/Bbarolo",
-	"title": "github/editeodoro/Bbarolo",
-	"url": " https://rseng.github.io/software/repository/github/editeodoro/Bbarolo",
-	"content": "Bbarolo is a 3D fitting tool to derive the kinematics of galaxies from emission-line observations."
+	"github/PeterDenton/ANA": {
+	"id": "github/PeterDenton/ANA",
+	"title": "github/PeterDenton/ANA",
+	"url": " https://rseng.github.io/software/repository/github/PeterDenton/ANA",
+	"content": "Astrophysical Neutrino Anisotropy"
 	},
-	"github/jranalli/solartoolbox": {
-	"id": "github/jranalli/solartoolbox",
-	"title": "github/jranalli/solartoolbox",
-	"url": " https://rseng.github.io/software/repository/github/jranalli/solartoolbox",
-	"content": "Library of tools used to support spatial analyses of solar energy"
+	"github/smirik/resonances": {
+	"id": "github/smirik/resonances",
+	"title": "github/smirik/resonances",
+	"url": " https://rseng.github.io/software/repository/github/smirik/resonances",
+	"content": "A python package for identification of mean-motion resonances in the Solar system and other planetary systems."
 	},
-	"github/icbm-iupui/STAFF": {
-	"id": "github/icbm-iupui/STAFF",
-	"title": "github/icbm-iupui/STAFF",
-	"url": " https://rseng.github.io/software/repository/github/icbm-iupui/STAFF",
-	"content": "None"
+	"github/ruizengalways/FOD-Net": {
+	"id": "github/ruizengalways/FOD-Net",
+	"title": "github/ruizengalways/FOD-Net",
+	"url": " https://rseng.github.io/software/repository/github/ruizengalways/FOD-Net",
+	"content": "FOD-Net: A Deep Learning Method for Fiber Orientation Distribution Angular Super Resolution"
 	},
-	"github/oscaribv/citlalicue": {
-	"id": "github/oscaribv/citlalicue",
-	"title": "github/oscaribv/citlalicue",
-	"url": " https://rseng.github.io/software/repository/github/oscaribv/citlalicue",
-	"content": "Create and manipulate stellar light curves!"
+	"github/jepegit/cellpy": {
+	"id": "github/jepegit/cellpy",
+	"title": "github/jepegit/cellpy",
+	"url": " https://rseng.github.io/software/repository/github/jepegit/cellpy",
+	"content": "extract and tweak data from electrochemical tests of cells"
 	},
-	"github/oscaribv/exotrending": {
-	"id": "github/oscaribv/exotrending",
-	"title": "github/oscaribv/exotrending",
-	"url": " https://rseng.github.io/software/repository/github/oscaribv/exotrending",
-	"content": "A fast and easy-to-use light curve detrending software for exoplanets"
+	"github/BradhamLab/icat": {
+	"id": "github/BradhamLab/icat",
+	"title": "github/BradhamLab/icat",
+	"url": " https://rseng.github.io/software/repository/github/BradhamLab/icat",
+	"content": "Identifying Cell-states Across Treatments"
 	},
-	"github/oscaribv/pyaneti": {
-	"id": "github/oscaribv/pyaneti",
-	"title": "github/oscaribv/pyaneti",
-	"url": " https://rseng.github.io/software/repository/github/oscaribv/pyaneti",
-	"content": "A multi-planet Radial Velocity and Transit modelling software"
+	"github/mh-skjelvareid/synaptus": {
+	"id": "github/mh-skjelvareid/synaptus",
+	"title": "github/mh-skjelvareid/synaptus",
+	"url": " https://rseng.github.io/software/repository/github/mh-skjelvareid/synaptus",
+	"content": "A Matlab/Octave toolbox for synthetic aperture ultrasound imaging"
 	},
-	"github/UM-KevinHe/surtvep": {
-	"id": "github/UM-KevinHe/surtvep",
-	"title": "github/UM-KevinHe/surtvep",
-	"url": " https://rseng.github.io/software/repository/github/UM-KevinHe/surtvep",
-	"content": "None"
+	"github/fredstro/hilbertmodgroup": {
+	"id": "github/fredstro/hilbertmodgroup",
+	"title": "github/fredstro/hilbertmodgroup",
+	"url": " https://rseng.github.io/software/repository/github/fredstro/hilbertmodgroup",
+	"content": "Implementation of Hilbert modular groups using SageMath"
 	},
-	"github/QingyuLiaib/PLA-MoRe": {
-	"id": "github/QingyuLiaib/PLA-MoRe",
-	"title": "github/QingyuLiaib/PLA-MoRe",
-	"url": " https://rseng.github.io/software/repository/github/QingyuLiaib/PLA-MoRe",
-	"content": "None"
+	"github/Yash-10/Periodogram-Comparison-Optimize-Planet-Detection": {
+	"id": "github/Yash-10/Periodogram-Comparison-Optimize-Planet-Detection",
+	"title": "github/Yash-10/Periodogram-Comparison-Optimize-Planet-Detection",
+	"url": " https://rseng.github.io/software/repository/github/Yash-10/Periodogram-Comparison-Optimize-Planet-Detection",
+	"content": "Extreme Value Theory for comparing periodograms: Optimizing future transiting exoplanet surveys"
 	},
-	"github/yangyanli/DO-Conv": {
-	"id": "github/yangyanli/DO-Conv",
-	"title": "github/yangyanli/DO-Conv",
-	"url": " https://rseng.github.io/software/repository/github/yangyanli/DO-Conv",
-	"content": "Depthwise Over-parameterized Convolutional Layer"
+	"github/Yash-10/beta-sgp": {
+	"id": "github/Yash-10/beta-sgp",
+	"title": "github/Yash-10/beta-sgp",
+	"url": " https://rseng.github.io/software/repository/github/Yash-10/beta-sgp",
+	"content": "Scaled Gradient Projection (SGP) algorithm with beta divergence"
 	},
-	"github/myfang2021/VIPPID": {
-	"id": "github/myfang2021/VIPPID",
-	"title": "github/myfang2021/VIPPID",
-	"url": " https://rseng.github.io/software/repository/github/myfang2021/VIPPID",
+	"github/llt1836/TE-HI-GCN": {
+	"id": "github/llt1836/TE-HI-GCN",
+	"title": "github/llt1836/TE-HI-GCN",
+	"url": " https://rseng.github.io/software/repository/github/llt1836/TE-HI-GCN",
 	"content": "None"
 	},
-	"github/stingraysoftware/stingray": {
-	"id": "github/stingraysoftware/stingray",
-	"title": "github/stingraysoftware/stingray",
-	"url": " https://rseng.github.io/software/repository/github/stingraysoftware/stingray",
-	"content": "Anything can happen in the next half hour (including spectral timing made easy)!"
-	},
-	"github/pelahi/VELOCIraptor-STF": {
-	"id": "github/pelahi/VELOCIraptor-STF",
-	"title": "github/pelahi/VELOCIraptor-STF",
-	"url": " https://rseng.github.io/software/repository/github/pelahi/VELOCIraptor-STF",
-	"content": "Galaxy/(sub)Halo finder for N-body simulations"
-	},
-	"github/pelahi/TreeFrog": {
-	"id": "github/pelahi/TreeFrog",
-	"title": "github/pelahi/TreeFrog",
-	"url": " https://rseng.github.io/software/repository/github/pelahi/TreeFrog",
-	"content": "Software to build Halo Merger Trees/compare halo catalogs"
-	},
-	"github/SuLab/Wikidata-phenomizer": {
-	"id": "github/SuLab/Wikidata-phenomizer",
-	"title": "github/SuLab/Wikidata-phenomizer",
-	"url": " https://rseng.github.io/software/repository/github/SuLab/Wikidata-phenomizer",
-	"content": "Incorporate wikidata statements into phenomizer"
+	"github/libgamera/GAMERA": {
+	"id": "github/libgamera/GAMERA",
+	"title": "github/libgamera/GAMERA",
+	"url": " https://rseng.github.io/software/repository/github/libgamera/GAMERA",
+	"content": "A C++/python library for source modeling in gamma astronomy"
 	},
-	"github/JIBSIL/DistriFS": {
-	"id": "github/JIBSIL/DistriFS",
-	"title": "github/JIBSIL/DistriFS",
-	"url": " https://rseng.github.io/software/repository/github/JIBSIL/DistriFS",
-	"content": "Distributed, efficient and secure filesystem coded in Go"
+	"github/omboersma/deepglow": {
+	"id": "github/omboersma/deepglow",
+	"title": "github/omboersma/deepglow",
+	"url": " https://rseng.github.io/software/repository/github/omboersma/deepglow",
+	"content": "A neural network emulator for BOXFIT"
 	},
-	"github/ivastar/clear": {
-	"id": "github/ivastar/clear",
-	"title": "github/ivastar/clear",
-	"url": " https://rseng.github.io/software/repository/github/ivastar/clear",
-	"content": "Library for the CLEAR collaboration codebase."
+	"github/pcingola/SnpEff": {
+	"id": "github/pcingola/SnpEff",
+	"title": "github/pcingola/SnpEff",
+	"url": " https://rseng.github.io/software/repository/github/pcingola/SnpEff",
+	"content": "genetic variant annotation and effect prediction toolbox - tool"
 	},
-	"github/mpokorny/vysmaw": {
-	"id": "github/mpokorny/vysmaw",
-	"title": "github/mpokorny/vysmaw",
-	"url": " https://rseng.github.io/software/repository/github/mpokorny/vysmaw",
-	"content": "Fast visibility stream muncher"
+	"github/aomlomics/tourmaline": {
+	"id": "github/aomlomics/tourmaline",
+	"title": "github/aomlomics/tourmaline",
+	"url": " https://rseng.github.io/software/repository/github/aomlomics/tourmaline",
+	"content": "Amplicon sequence processing workflow using QIIME 2 and Snakemake"
 	},
-	"github/pkugyf/MST": {
-	"id": "github/pkugyf/MST",
-	"title": "github/pkugyf/MST",
-	"url": " https://rseng.github.io/software/repository/github/pkugyf/MST",
-	"content": "None"
+	"github/nickhand/pyRSD": {
+	"id": "github/nickhand/pyRSD",
+	"title": "github/nickhand/pyRSD",
+	"url": " https://rseng.github.io/software/repository/github/nickhand/pyRSD",
+	"content": "Accurate predictions for the clustering of galaxies in redshift-space in Python"
 	},
-	"github/BGI-Qingdao/TGS-GapCloser": {
-	"id": "github/BGI-Qingdao/TGS-GapCloser",
-	"title": "github/BGI-Qingdao/TGS-GapCloser",
-	"url": " https://rseng.github.io/software/repository/github/BGI-Qingdao/TGS-GapCloser",
-	"content": "A gap-closing software tool that uses long reads to enhance genome assembly."
+	"github/diCenzo-GC/Tn-Core-webserver": {
+	"id": "github/diCenzo-GC/Tn-Core-webserver",
+	"title": "github/diCenzo-GC/Tn-Core-webserver",
+	"url": " https://rseng.github.io/software/repository/github/diCenzo-GC/Tn-Core-webserver",
+	"content": "Help files and sample data for the Tn-Core webserver. The code supporting the web server is also included."
 	},
-	"github/Yu606/odyssey": {
-	"id": "github/Yu606/odyssey",
-	"title": "github/Yu606/odyssey",
-	"url": " https://rseng.github.io/software/repository/github/Yu606/odyssey",
-	"content": "None"
+	"github/saezlab/PHONEMeS": {
+	"id": "github/saezlab/PHONEMeS",
+	"title": "github/saezlab/PHONEMeS",
+	"url": " https://rseng.github.io/software/repository/github/saezlab/PHONEMeS",
+	"content": " PHONEMeS (PHOsphorylation NEtworks for Mass Spectrometry) is an R package   to model signalling networks based on untargeted phosphoproteomics"
 	},
-	"github/undark-lab/swyft": {
-	"id": "github/undark-lab/swyft",
-	"title": "github/undark-lab/swyft",
-	"url": " https://rseng.github.io/software/repository/github/undark-lab/swyft",
-	"content": "Truncated marginal neural ratio estimation estimation with PyTorch."
+	"github/mpc-bioinformatics/CalibraCurve": {
+	"id": "github/mpc-bioinformatics/CalibraCurve",
+	"title": "github/mpc-bioinformatics/CalibraCurve",
+	"url": " https://rseng.github.io/software/repository/github/mpc-bioinformatics/CalibraCurve",
+	"content": "CalibraCurve"
 	},
-	"github/undark-lab/albatross": {
-	"id": "github/undark-lab/albatross",
-	"title": "github/undark-lab/albatross",
-	"url": " https://rseng.github.io/software/repository/github/undark-lab/albatross",
-	"content": "A simulation-based Inference (SBI) library designed to perform analysis on stellar streams in the Milky Way"
+	"github/rega-cev/virulign": {
+	"id": "github/rega-cev/virulign",
+	"title": "github/rega-cev/virulign",
+	"url": " https://rseng.github.io/software/repository/github/rega-cev/virulign",
+	"content": "VIRULIGN: fast codon-correct alignment and annotation of viral genomes"
 	},
-	"github/undark-lab/sstrax": {
-	"id": "github/undark-lab/sstrax",
-	"title": "github/undark-lab/sstrax",
-	"url": " https://rseng.github.io/software/repository/github/undark-lab/sstrax",
-	"content": "A jax-accelerated modelling code for Milky Way stellar streams"
+	"github/sklasfeld/DANPOS3": {
+	"id": "github/sklasfeld/DANPOS3",
+	"title": "github/sklasfeld/DANPOS3",
+	"url": " https://rseng.github.io/software/repository/github/sklasfeld/DANPOS3",
+	"content": "a toolkit for Dynamic Analysis of Nucleosome and Protein Occupancy by Sequencing."
 	},
-	"github/theGreatHerrLebert/rustims": {
-	"id": "github/theGreatHerrLebert/rustims",
-	"title": "github/theGreatHerrLebert/rustims",
-	"url": " https://rseng.github.io/software/repository/github/theGreatHerrLebert/rustims",
-	"content": "A Framework for IMS-MS Raw Data Processing written in Rust and Python."
+	"github/federicomarulli/CosmoBolognaLib": {
+	"id": "github/federicomarulli/CosmoBolognaLib",
+	"title": "github/federicomarulli/CosmoBolognaLib",
+	"url": " https://rseng.github.io/software/repository/github/federicomarulli/CosmoBolognaLib",
+	"content": "free software C++ libraries for cosmological calculations"
 	},
-	"github/jonathansick/skyoffset": {
-	"id": "github/jonathansick/skyoffset",
-	"title": "github/jonathansick/skyoffset",
-	"url": " https://rseng.github.io/software/repository/github/jonathansick/skyoffset",
-	"content": "Sky offset optimization and mosaicing toolkit used by ANDROIDS"
+	"github/drupke/ifsred": {
+	"id": "github/drupke/ifsred",
+	"title": "github/drupke/ifsred",
+	"url": " https://rseng.github.io/software/repository/github/drupke/ifsred",
+	"content": "Astronomy software tools for reducing data from an integral field spectrograph (IFS)."
 	},
-	"github/jonathansick/starfish": {
-	"id": "github/jonathansick/starfish",
-	"title": "github/jonathansick/starfish",
-	"url": " https://rseng.github.io/software/repository/github/jonathansick/starfish",
-	"content": "GitHub StarFISH mirror (with patches)"
+	"github/drupke/ifsfit": {
+	"id": "github/drupke/ifsfit",
+	"title": "github/drupke/ifsfit",
+	"url": " https://rseng.github.io/software/repository/github/drupke/ifsfit",
+	"content": "Astronomy spectral fitting software optimized for integral field spectroscopy (IFS)."
 	},
-	"github/jonathansick/MoAstro": {
-	"id": "github/jonathansick/MoAstro",
-	"title": "github/jonathansick/MoAstro",
-	"url": " https://rseng.github.io/software/repository/github/jonathansick/MoAstro",
-	"content": "MongoDB framework for observational astronomy"
+	"github/drupke/questfit": {
+	"id": "github/drupke/questfit",
+	"title": "github/drupke/questfit",
+	"url": " https://rseng.github.io/software/repository/github/drupke/questfit",
+	"content": "fitter for mid-infrared galaxy spectra"
 	},
-	"github/AemulusProject/bias_emulator": {
-	"id": "github/AemulusProject/bias_emulator",
-	"title": "github/AemulusProject/bias_emulator",
-	"url": " https://rseng.github.io/software/repository/github/AemulusProject/bias_emulator",
-	"content": "Emulator for the halo bias from The Aemulus Project."
+	"github/containers/podman": {
+	"id": "github/containers/podman",
+	"title": "github/containers/podman",
+	"url": " https://rseng.github.io/software/repository/github/containers/podman",
+	"content": "Podman: A tool for managing OCI containers and pods"
 	},
-	"github/davidharvey1986/pyRRG": {
-	"id": "github/davidharvey1986/pyRRG",
-	"title": "github/davidharvey1986/pyRRG",
-	"url": " https://rseng.github.io/software/repository/github/davidharvey1986/pyRRG",
-	"content": "pyRRG weak lensing shape measurement code. Measuring the 2nd and 4th order moments it uses a TinyTim model to correct for PSF distortions. It is invariant to number exposures, ortientation of the drizzle images. Using a machine learning algorithm it automatically star and galaxy classifies, howeve the user is able to do this manually if not accurate enough. For more see https://arxiv.org/abs/astro-ph/9905090. For bugs please report them to https://github.com/davidharvey1986/pyRRG or contact harvey@lorentz.leidenuniv.nl"
+	"github/NathanSandford/Chem-I-Calc": {
+	"id": "github/NathanSandford/Chem-I-Calc",
+	"title": "github/NathanSandford/Chem-I-Calc",
+	"url": " https://rseng.github.io/software/repository/github/NathanSandford/Chem-I-Calc",
+	"content": "Chemical information calculator for resolved stellar spectroscopy"
 	},
-	"github/nmfs-fish-tools/ssmse": {
-	"id": "github/nmfs-fish-tools/ssmse",
-	"title": "github/nmfs-fish-tools/ssmse",
-	"url": " https://rseng.github.io/software/repository/github/nmfs-fish-tools/ssmse",
-	"content": "Management Strategy Evaluation (MSE) using Stock Synthesis (SS3)"
+	"github/LSSTDESC/WeakLensingDeblending": {
+	"id": "github/LSSTDESC/WeakLensingDeblending",
+	"title": "github/LSSTDESC/WeakLensingDeblending",
+	"url": " https://rseng.github.io/software/repository/github/LSSTDESC/WeakLensingDeblending",
+	"content": "Weak lensing fast simulations and analysis of blended objects."
 	},
-	"github/dglaeser/gridformat": {
-	"id": "github/dglaeser/gridformat",
-	"title": "github/dglaeser/gridformat",
-	"url": " https://rseng.github.io/software/repository/github/dglaeser/gridformat",
-	"content": "Header-only C++-Library for grid file I/O"
+	"github/LSSTDESC/descqa": {
+	"id": "github/LSSTDESC/descqa",
+	"title": "github/LSSTDESC/descqa",
+	"url": " https://rseng.github.io/software/repository/github/LSSTDESC/descqa",
+	"content": "A validation framework and tests for mock galaxy catalogs and beyond"
 	},
-	"github/tcallister/autoregressive-bbh-inference": {
-	"id": "github/tcallister/autoregressive-bbh-inference",
-	"title": "github/tcallister/autoregressive-bbh-inference",
-	"url": " https://rseng.github.io/software/repository/github/tcallister/autoregressive-bbh-inference",
-	"content": "This repository holds code and data release products behind the paper &#34;A parameter-free tour of the binary black hole population&#34;"
+	"github/LSSTDESC/snmachine": {
+	"id": "github/LSSTDESC/snmachine",
+	"title": "github/LSSTDESC/snmachine",
+	"url": " https://rseng.github.io/software/repository/github/LSSTDESC/snmachine",
+	"content": "Machine learning code for photometric supernova classification"
 	},
-	"github/V-Bernal/GeneNetTools": {
-	"id": "github/V-Bernal/GeneNetTools",
-	"title": "github/V-Bernal/GeneNetTools",
-	"url": " https://rseng.github.io/software/repository/github/V-Bernal/GeneNetTools",
-	"content": "R package for Gaussian graphical models with (Ledoit Wolf) shrinkage "
+	"github/LSSTDESC/NaMaster": {
+	"id": "github/LSSTDESC/NaMaster",
+	"title": "github/LSSTDESC/NaMaster",
+	"url": " https://rseng.github.io/software/repository/github/LSSTDESC/NaMaster",
+	"content": "A unified pseudo-Cl framework"
 	},
-	"github/jeancmaia/mcglm": {
-	"id": "github/jeancmaia/mcglm",
-	"title": "github/jeancmaia/mcglm",
-	"url": " https://rseng.github.io/software/repository/github/jeancmaia/mcglm",
-	"content": "Python Framework for Multivariate Covariance Generalized Linear Models "
+	"github/LSSTDESC/chroma": {
+	"id": "github/LSSTDESC/chroma",
+	"title": "github/LSSTDESC/chroma",
+	"url": " https://rseng.github.io/software/repository/github/LSSTDESC/chroma",
+	"content": "Investigations of chromatic effects for LSST weak lensing, as documented here: https://LSSTDESC.github.io/chroma/ and here:"
 	},
-	"github/jimmink/argslab": {
-	"id": "github/jimmink/argslab",
-	"title": "github/jimmink/argslab",
-	"url": " https://rseng.github.io/software/repository/github/jimmink/argslab",
-	"content": "Repository for ArGSLab, Arrested and Gelated Structures Laboratory."
+	"github/LSSTDESC/sacc": {
+	"id": "github/LSSTDESC/sacc",
+	"title": "github/LSSTDESC/sacc",
+	"url": " https://rseng.github.io/software/repository/github/LSSTDESC/sacc",
+	"content": "Save All Correlations and Covariances"
 	},
-	"github/afarahi/PoPE": {
-	"id": "github/afarahi/PoPE",
-	"title": "github/afarahi/PoPE",
-	"url": " https://rseng.github.io/software/repository/github/afarahi/PoPE",
-	"content": "Population Profile Estimator"
+	"github/LSSTDESC/BlendingToolKit": {
+	"id": "github/LSSTDESC/BlendingToolKit",
+	"title": "github/LSSTDESC/BlendingToolKit",
+	"url": " https://rseng.github.io/software/repository/github/LSSTDESC/BlendingToolKit",
+	"content": "Tools to create blend catalogs, produce training samples and implement blending metrics"
 	},
-	"github/afarahi/tatter": {
-	"id": "github/afarahi/tatter",
-	"title": "github/afarahi/tatter",
-	"url": " https://rseng.github.io/software/repository/github/afarahi/tatter",
-	"content": "TATTER (Two-sAmple TesT EstimatoR) is a tool to perform two-sample hypothesis test."
+	"github/LSSTDESC/Spectractor": {
+	"id": "github/LSSTDESC/Spectractor",
+	"title": "github/LSSTDESC/Spectractor",
+	"url": " https://rseng.github.io/software/repository/github/LSSTDESC/Spectractor",
+	"content": "Spectractor aims at measuring the atmospheric transmission from slitless spectrophotometry images."
 	},
-	"github/afarahi/kllr": {
-	"id": "github/afarahi/kllr",
-	"title": "github/afarahi/kllr",
-	"url": " https://rseng.github.io/software/repository/github/afarahi/kllr",
-	"content": "Kernel Localized Linear Regression (KLLR)"
+	"github/LSSTDESC/CCL": {
+	"id": "github/LSSTDESC/CCL",
+	"title": "github/LSSTDESC/CCL",
+	"url": " https://rseng.github.io/software/repository/github/LSSTDESC/CCL",
+	"content": "DESC Core Cosmology Library: cosmology routines with validated numerical accuracy"
 	},
-	"github/liuhao-cn/fastSHT": {
-	"id": "github/liuhao-cn/fastSHT",
-	"title": "github/liuhao-cn/fastSHT",
-	"url": " https://rseng.github.io/software/repository/github/liuhao-cn/fastSHT",
-	"content": "Fast Spherical Harmonic Transforms for a large number of sky maps"
+	"github/tmcclintock/cluster_toolkit": {
+	"id": "github/tmcclintock/cluster_toolkit",
+	"title": "github/tmcclintock/cluster_toolkit",
+	"url": " https://rseng.github.io/software/repository/github/tmcclintock/cluster_toolkit",
+	"content": "Tools for analyzing galaxy clusters."
 	},
-	"github/caselawanalytics/CaseLawAnalytics": {
-	"id": "github/caselawanalytics/CaseLawAnalytics",
-	"title": "github/caselawanalytics/CaseLawAnalytics",
-	"url": " https://rseng.github.io/software/repository/github/caselawanalytics/CaseLawAnalytics",
-	"content": "None"
+	"github/tmcclintock/AReconstructionTool": {
+	"id": "github/tmcclintock/AReconstructionTool",
+	"title": "github/tmcclintock/AReconstructionTool",
+	"url": " https://rseng.github.io/software/repository/github/tmcclintock/AReconstructionTool",
+	"content": "ART: A Reconstruction Tool. For reconstructing probability distributions using Gaussian processes."
 	},
-	"github/rudolffu/pyfosc": {
-	"id": "github/rudolffu/pyfosc",
-	"title": "github/rudolffu/pyfosc",
-	"url": " https://rseng.github.io/software/repository/github/rudolffu/pyfosc",
-	"content": "PyFOSC is a pipeline toolbox for spectroscopic data reduction written in Python. It can be used for FOSC data from Xinglong/Lijiang 2-meter telescopes."
+	"github/PaulRitsche/DLTrack": {
+	"id": "github/PaulRitsche/DLTrack",
+	"title": "github/PaulRitsche/DLTrack",
+	"url": " https://rseng.github.io/software/repository/github/PaulRitsche/DLTrack",
+	"content": "This repositories contains code for automatic analysis of human lower limb ultrasonography images."
 	},
-	"github/bramvandijk88/cacatoo": {
-	"id": "github/bramvandijk88/cacatoo",
-	"title": "github/bramvandijk88/cacatoo",
-	"url": " https://rseng.github.io/software/repository/github/bramvandijk88/cacatoo",
-	"content": "A javascript library for building, exploring, and sharing spatially structured models of biological systems"
+	"github/JuliaDynamics/TimeseriesSurrogates.jl": {
+	"id": "github/JuliaDynamics/TimeseriesSurrogates.jl",
+	"title": "github/JuliaDynamics/TimeseriesSurrogates.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaDynamics/TimeseriesSurrogates.jl",
+	"content": "A Julia library for generating surrogate data."
 	},
-	"github/swiftsim/swiftsimio": {
-	"id": "github/swiftsim/swiftsimio",
-	"title": "github/swiftsim/swiftsimio",
-	"url": " https://rseng.github.io/software/repository/github/swiftsim/swiftsimio",
-	"content": "Python library for reading SWIFT data. Uses unyt and h5py."
+	"github/JuliaDynamics/DrWatson.jl": {
+	"id": "github/JuliaDynamics/DrWatson.jl",
+	"title": "github/JuliaDynamics/DrWatson.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaDynamics/DrWatson.jl",
+	"content": "The perfect sidekick to your scientific inquiries"
 	},
-	"github/yangxiaolinyn/Lemon": {
-	"id": "github/yangxiaolinyn/Lemon",
-	"title": "github/yangxiaolinyn/Lemon",
-	"url": " https://rseng.github.io/software/repository/github/yangxiaolinyn/Lemon",
-	"content": "None"
+	"github/JuliaDynamics/TransitionsInTimeseries.jl": {
+	"id": "github/JuliaDynamics/TransitionsInTimeseries.jl",
+	"title": "github/JuliaDynamics/TransitionsInTimeseries.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaDynamics/TransitionsInTimeseries.jl",
+	"content": "Transition Indicators / Early Warning Signals / Regime Shifts / Change Point Detection"
 	},
-	"github/portsmouth/cmbview": {
-	"id": "github/portsmouth/cmbview",
-	"title": "github/portsmouth/cmbview",
-	"url": " https://rseng.github.io/software/repository/github/portsmouth/cmbview",
-	"content": "Automatically exported from code.google.com/p/cmbview"
+	"github/TRACER-LULab/Hyperelastics.jl": {
+	"id": "github/TRACER-LULab/Hyperelastics.jl",
+	"title": "github/TRACER-LULab/Hyperelastics.jl",
+	"url": " https://rseng.github.io/software/repository/github/TRACER-LULab/Hyperelastics.jl",
+	"content": "Hyperelastic Material modelling with support for Automatic Differentiation"
 	},
-	"github/karllark/measure_extinction": {
-	"id": "github/karllark/measure_extinction",
-	"title": "github/karllark/measure_extinction",
-	"url": " https://rseng.github.io/software/repository/github/karllark/measure_extinction",
-	"content": "Measure interstellar dust extinction using pair method"
+	"github/ranieremenezes/easyFermi": {
+	"id": "github/ranieremenezes/easyFermi",
+	"title": "github/ranieremenezes/easyFermi",
+	"url": " https://rseng.github.io/software/repository/github/ranieremenezes/easyFermi",
+	"content": "The easiest way to analyze Fermi-LAT data"
 	},
-	"github/karllark/DIRTY_dustrt": {
-	"id": "github/karllark/DIRTY_dustrt",
-	"title": "github/karllark/DIRTY_dustrt",
-	"url": " https://rseng.github.io/software/repository/github/karllark/DIRTY_dustrt",
-	"content": "DIRTY: 3D dust radiative transfer for dusty astrophysical sources"
+	"github/ranieremenezes/easyspec": {
+	"id": "github/ranieremenezes/easyspec",
+	"title": "github/ranieremenezes/easyspec",
+	"url": " https://rseng.github.io/software/repository/github/ranieremenezes/easyspec",
+	"content": "The easiest way to do long-slit optical spectroscopy"
 	},
-	"github/karllark/dust_extinction": {
-	"id": "github/karllark/dust_extinction",
-	"title": "github/karllark/dust_extinction",
-	"url": " https://rseng.github.io/software/repository/github/karllark/dust_extinction",
-	"content": "Astronomical Dust Extinction"
+	"github/barnabytprowe/imcom": {
+	"id": "github/barnabytprowe/imcom",
+	"title": "github/barnabytprowe/imcom",
+	"url": " https://rseng.github.io/software/repository/github/barnabytprowe/imcom",
+	"content": "Public repository for the IMCOM (IMage COMbination) software described in Rowe, Hirata &amp; Rhodes (2011)"
 	},
-	"github/SJ001/AI-Feynman": {
-	"id": "github/SJ001/AI-Feynman",
-	"title": "github/SJ001/AI-Feynman",
-	"url": " https://rseng.github.io/software/repository/github/SJ001/AI-Feynman",
-	"content": "None"
+	"github/andizq/sf3dmodels": {
+	"id": "github/andizq/sf3dmodels",
+	"title": "github/andizq/sf3dmodels",
+	"url": " https://rseng.github.io/software/repository/github/andizq/sf3dmodels",
+	"content": "sf3dmodels: star-forming regions 3D modelling package in Python :partly_sunny:"
 	},
-	"github/algo-cancer/CAMMiQ": {
-	"id": "github/algo-cancer/CAMMiQ",
-	"title": "github/algo-cancer/CAMMiQ",
-	"url": " https://rseng.github.io/software/repository/github/algo-cancer/CAMMiQ",
-	"content": "Metagenomics microbial abundance quantification"
+	"github/hombit/freddi": {
+	"id": "github/hombit/freddi",
+	"title": "github/hombit/freddi",
+	"url": " https://rseng.github.io/software/repository/github/hombit/freddi",
+	"content": "Compute FRED light curves of LMXBs outbursts"
 	},
-	"github/opencollab/arpack-ng": {
-	"id": "github/opencollab/arpack-ng",
-	"title": "github/opencollab/arpack-ng",
-	"url": " https://rseng.github.io/software/repository/github/opencollab/arpack-ng",
-	"content": "Collection of Fortran77 subroutines designed to solve large scale eigenvalue problems."
+	"github/Materials-Consortia/OPTIMADE-Filter": {
+	"id": "github/Materials-Consortia/OPTIMADE-Filter",
+	"title": "github/Materials-Consortia/OPTIMADE-Filter",
+	"url": " https://rseng.github.io/software/repository/github/Materials-Consortia/OPTIMADE-Filter",
+	"content": "OPTIMADE filter language parser in Perl"
 	},
-	"github/LMBooth/pybci": {
-	"id": "github/LMBooth/pybci",
-	"title": "github/LMBooth/pybci",
-	"url": " https://rseng.github.io/software/repository/github/LMBooth/pybci",
-	"content": "Create real-time BCI&#39;s with the LSL, PyTorch, SKLearn and TensorFlow packages."
+	"github/Materials-Consortia/optimade-python-tools": {
+	"id": "github/Materials-Consortia/optimade-python-tools",
+	"title": "github/Materials-Consortia/optimade-python-tools",
+	"url": " https://rseng.github.io/software/repository/github/Materials-Consortia/optimade-python-tools",
+	"content": "Tools for implementing and consuming OPTIMADE APIs in Python"
 	},
-	"github/Incpink-Liu/DNA-storage-R_plus": {
-	"id": "github/Incpink-Liu/DNA-storage-R_plus",
-	"title": "github/Incpink-Liu/DNA-storage-R_plus",
-	"url": " https://rseng.github.io/software/repository/github/Incpink-Liu/DNA-storage-R_plus",
-	"content": "None"
+	"github/INRS-France/predicting_alarm_audibility": {
+	"id": "github/INRS-France/predicting_alarm_audibility",
+	"title": "github/INRS-France/predicting_alarm_audibility",
+	"url": " https://rseng.github.io/software/repository/github/INRS-France/predicting_alarm_audibility",
+	"content": "This Python code is derived from the research article &#34;Evaluating and Predicting the Audibility of Acoustic Alarms in the Workplace Using Experimental Methods and Deep Learning&#34; published in the journal Applied Acoustics. It provides a framework for predicting the audibility of acoustic alarms in noise, and includes scripts to reproduce the results"
 	},
-	"github/nonlocalmodels/NLMech": {
-	"id": "github/nonlocalmodels/NLMech",
-	"title": "github/nonlocalmodels/NLMech",
-	"url": " https://rseng.github.io/software/repository/github/nonlocalmodels/NLMech",
-	"content": "Implementation of finite element and finite difference approximation of Nonlocal models"
+	"github/BattModels/asimtools": {
+	"id": "github/BattModels/asimtools",
+	"title": "github/BattModels/asimtools",
+	"url": " https://rseng.github.io/software/repository/github/BattModels/asimtools",
+	"content": "Optimized workflow management and script handling for atomistic simulations"
 	},
-	"github/realfastvla/realfast": {
-	"id": "github/realfastvla/realfast",
-	"title": "github/realfastvla/realfast",
-	"url": " https://rseng.github.io/software/repository/github/realfastvla/realfast",
-	"content": "Real-time interferometric data analysis for the VLA"
+	"github/r-cas/caracas": {
+	"id": "github/r-cas/caracas",
+	"title": "github/r-cas/caracas",
+	"url": " https://rseng.github.io/software/repository/github/r-cas/caracas",
+	"content": "Computer algebra in R"
 	},
-	"github/realfastvla/rfpipe": {
-	"id": "github/realfastvla/rfpipe",
-	"title": "github/realfastvla/rfpipe",
-	"url": " https://rseng.github.io/software/repository/github/realfastvla/rfpipe",
-	"content": "Fast radio interferometric transient search pipeline"
+	"github/Schulik/aiolos": {
+	"id": "github/Schulik/aiolos",
+	"title": "github/Schulik/aiolos",
+	"url": " https://rseng.github.io/software/repository/github/Schulik/aiolos",
+	"content": "1-D hydrodynamics code for planetary atmosphere accretion and escape simulations"
 	},
-	"github/LangeLab/SQuAPP": {
-	"id": "github/LangeLab/SQuAPP",
-	"title": "github/LangeLab/SQuAPP",
-	"url": " https://rseng.github.io/software/repository/github/LangeLab/SQuAPP",
-	"content": "Shiny App allows streamlined analysis of multiple levels of proteomics data."
+	"github/AP6YC/ClusterValidityIndices.jl": {
+	"id": "github/AP6YC/ClusterValidityIndices.jl",
+	"title": "github/AP6YC/ClusterValidityIndices.jl",
+	"url": " https://rseng.github.io/software/repository/github/AP6YC/ClusterValidityIndices.jl",
+	"content": "A Julia package for Cluster Validity Indices (CVIs)."
 	},
-	"github/DrexelLenser/Lenser": {
-	"id": "github/DrexelLenser/Lenser",
-	"title": "github/DrexelLenser/Lenser",
-	"url": " https://rseng.github.io/software/repository/github/DrexelLenser/Lenser",
-	"content": "A tool for measuring weak gravitational flexion"
+	"github/AP6YC/AdaptiveResonance.jl": {
+	"id": "github/AP6YC/AdaptiveResonance.jl",
+	"title": "github/AP6YC/AdaptiveResonance.jl",
+	"url": " https://rseng.github.io/software/repository/github/AP6YC/AdaptiveResonance.jl",
+	"content": "A Julia package for Adaptive Resonance Theory (ART) algorithms."
 	},
-	"github/USEPA/SSN2": {
-	"id": "github/USEPA/SSN2",
-	"title": "github/USEPA/SSN2",
-	"url": " https://rseng.github.io/software/repository/github/USEPA/SSN2",
-	"content": "SSN2: Spatial Modeling on Stream Networks in R"
+	"github/cran/irtplay": {
+	"id": "github/cran/irtplay",
+	"title": "github/cran/irtplay",
+	"url": " https://rseng.github.io/software/repository/github/cran/irtplay",
+	"content": ":exclamation: This is a read-only mirror of the CRAN R package repository.  irtplay — Unidimensional Item Response Theory Modeling. Homepage: https://github.com/hwangQ/irtplay  Report bugs for this package: https://github.com/hwangQ/irtplay/issues"
 	},
-	"github/USEPA/nsink": {
-	"id": "github/USEPA/nsink",
-	"title": "github/USEPA/nsink",
-	"url": " https://rseng.github.io/software/repository/github/USEPA/nsink",
+	"github/euclidlib/euclidlib": {
+	"id": "github/euclidlib/euclidlib",
+	"title": "github/euclidlib/euclidlib",
+	"url": " https://rseng.github.io/software/repository/github/euclidlib/euclidlib",
+	"content": "Unofficial python library for reading data products from the Euclid mission"
+	},
+	"github/mrteetoe/HOI": {
+	"id": "github/mrteetoe/HOI",
+	"title": "github/mrteetoe/HOI",
+	"url": " https://rseng.github.io/software/repository/github/mrteetoe/HOI",
 	"content": "None"
 	},
-	"github/USEPA/harmonize-wq": {
-	"id": "github/USEPA/harmonize-wq",
-	"title": "github/USEPA/harmonize-wq",
-	"url": " https://rseng.github.io/software/repository/github/USEPA/harmonize-wq",
-	"content": "Standardize, clean, and wrangle Water Quality Portal data into more analytic-ready formats"
+	"github/gridap/GridapSolvers.jl": {
+	"id": "github/gridap/GridapSolvers.jl",
+	"title": "github/gridap/GridapSolvers.jl",
+	"url": " https://rseng.github.io/software/repository/github/gridap/GridapSolvers.jl",
+	"content": "Solvers and preconditioners for the Gridap ecosystem."
 	},
-	"github/vanheeringen-lab/gimmemotifs": {
-	"id": "github/vanheeringen-lab/gimmemotifs",
-	"title": "github/vanheeringen-lab/gimmemotifs",
-	"url": " https://rseng.github.io/software/repository/github/vanheeringen-lab/gimmemotifs",
-	"content": "Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments.  See full GimmeMotifs documentation for detailed installation instructions and usage examples."
+	"github/gridap/Gridap.jl": {
+	"id": "github/gridap/Gridap.jl",
+	"title": "github/gridap/Gridap.jl",
+	"url": " https://rseng.github.io/software/repository/github/gridap/Gridap.jl",
+	"content": "Grid-based approximation of partial differential equations in Julia"
 	},
-	"github/purmortal/galcraft": {
-	"id": "github/purmortal/galcraft",
-	"title": "github/purmortal/galcraft",
-	"url": " https://rseng.github.io/software/repository/github/purmortal/galcraft",
-	"content": "Mocking IFS data cube of the Milky Way"
+	"github/nedtaylor/athena": {
+	"id": "github/nedtaylor/athena",
+	"title": "github/nedtaylor/athena",
+	"url": " https://rseng.github.io/software/repository/github/nedtaylor/athena",
+	"content": "A Fortran-based feed-forward neural network library. Whilst this library currently has a focus on 3D convolutional neural networks (CNNs), it can handle most standard hidden layer forms of neural networks, with the plan to integrate more."
 	},
-	"github/geopandas/geopandas": {
-	"id": "github/geopandas/geopandas",
-	"title": "github/geopandas/geopandas",
-	"url": " https://rseng.github.io/software/repository/github/geopandas/geopandas",
-	"content": "Python tools for geographic data"
+	"github/dusanmarceta/Synthetic-Population-of-Interstellar-Objects": {
+	"id": "github/dusanmarceta/Synthetic-Population-of-Interstellar-Objects",
+	"title": "github/dusanmarceta/Synthetic-Population-of-Interstellar-Objects",
+	"url": " https://rseng.github.io/software/repository/github/dusanmarceta/Synthetic-Population-of-Interstellar-Objects",
+	"content": "None"
 	},
-	"github/Kambrian/HBTplus": {
-	"id": "github/Kambrian/HBTplus",
-	"title": "github/Kambrian/HBTplus",
-	"url": " https://rseng.github.io/software/repository/github/Kambrian/HBTplus",
-	"content": "HBT+ subhalo finder and merger tree builder, the tool to get you out of mess and back to physics."
+	"github/dusanmarceta/Synthetic-Population-of-Interstellar-Obejcts": {
+	"id": "github/dusanmarceta/Synthetic-Population-of-Interstellar-Obejcts",
+	"title": "github/dusanmarceta/Synthetic-Population-of-Interstellar-Obejcts",
+	"url": " https://rseng.github.io/software/repository/github/dusanmarceta/Synthetic-Population-of-Interstellar-Obejcts",
+	"content": "None"
 	},
-	"github/nanakiksc/zerone": {
-	"id": "github/nanakiksc/zerone",
-	"title": "github/nanakiksc/zerone",
-	"url": " https://rseng.github.io/software/repository/github/nanakiksc/zerone",
-	"content": "ChIP-seq discretization and quality control"
+	"github/xdqso/xdqso": {
+	"id": "github/xdqso/xdqso",
+	"title": "github/xdqso/xdqso",
+	"url": " https://rseng.github.io/software/repository/github/xdqso/xdqso",
+	"content": "Quasar classification with XD"
 	},
-	"github/NIFTy-PPL/JAXbind": {
-	"id": "github/NIFTy-PPL/JAXbind",
-	"title": "github/NIFTy-PPL/JAXbind",
-	"url": " https://rseng.github.io/software/repository/github/NIFTy-PPL/JAXbind",
-	"content": "Bind any function written in another language to JAX with support for JVP/VJP/batching/jit compilation"
+	"github/range-et/PGL": {
+	"id": "github/range-et/PGL",
+	"title": "github/range-et/PGL",
+	"url": " https://rseng.github.io/software/repository/github/range-et/PGL",
+	"content": "The Plebeian Graph Library: A WebGL based network visusalisation and diagnostics package"
 	},
-	"github/Toloka/crowd-kit": {
-	"id": "github/Toloka/crowd-kit",
-	"title": "github/Toloka/crowd-kit",
-	"url": " https://rseng.github.io/software/repository/github/Toloka/crowd-kit",
-	"content": "Control the quality of your labeled data with the Python tools you already know."
+	"github/sandmanns/CopyDetective": {
+	"id": "github/sandmanns/CopyDetective",
+	"title": "github/sandmanns/CopyDetective",
+	"url": " https://rseng.github.io/software/repository/github/sandmanns/CopyDetective",
+	"content": "Detection threshold aware CNV Calling in NGS data"
 	},
-	"github/goualard-f/MicroFloatingPoints.jl": {
-	"id": "github/goualard-f/MicroFloatingPoints.jl",
-	"title": "github/goualard-f/MicroFloatingPoints.jl",
-	"url": " https://rseng.github.io/software/repository/github/goualard-f/MicroFloatingPoints.jl",
-	"content": "A Julia package to manipulate very small IEEE 754 standard-compliant floating-point numbers."
+	"github/dbuscher/pois": {
+	"id": "github/dbuscher/pois",
+	"title": "github/dbuscher/pois",
+	"url": " https://rseng.github.io/software/repository/github/dbuscher/pois",
+	"content": "Python framework simulating the data from a ground-based optical interferometer"
 	},
-	"github/amrex-astro/Nyx": {
-	"id": "github/amrex-astro/Nyx",
-	"title": "github/amrex-astro/Nyx",
-	"url": " https://rseng.github.io/software/repository/github/amrex-astro/Nyx",
-	"content": "An adaptive mesh, N-body hydro cosmological simulation code"
+	"github/eEcoLiDAR/Laserfarm": {
+	"id": "github/eEcoLiDAR/Laserfarm",
+	"title": "github/eEcoLiDAR/Laserfarm",
+	"url": " https://rseng.github.io/software/repository/github/eEcoLiDAR/Laserfarm",
+	"content": "Laserchicken Framework for Applications in Research in Macro-ecology"
 	},
-	"github/amrex-astro/Castro": {
-	"id": "github/amrex-astro/Castro",
-	"title": "github/amrex-astro/Castro",
-	"url": " https://rseng.github.io/software/repository/github/amrex-astro/Castro",
-	"content": "An adaptive mesh, astrophysical compressible (radiation-, magneto-)  hydrodynamics simulation code for massively parallel CPU and GPU architectures."
+	"github/eEcoLiDAR/laserchicken": {
+	"id": "github/eEcoLiDAR/laserchicken",
+	"title": "github/eEcoLiDAR/laserchicken",
+	"url": " https://rseng.github.io/software/repository/github/eEcoLiDAR/laserchicken",
+	"content": "None"
 	},
-	"github/amrex-astro/MAESTRO": {
-	"id": "github/amrex-astro/MAESTRO",
-	"title": "github/amrex-astro/MAESTRO",
-	"url": " https://rseng.github.io/software/repository/github/amrex-astro/MAESTRO",
-	"content": "A low Mach number stellar hydrodynamics code"
+	"github/thorstone25/qups": {
+	"id": "github/thorstone25/qups",
+	"title": "github/thorstone25/qups",
+	"url": " https://rseng.github.io/software/repository/github/thorstone25/qups",
+	"content": "A MATLAB toolbox for prototyping and simulating diagnostic ultrasound imaging systems"
 	},
-	"github/csinva/imodels": {
-	"id": "github/csinva/imodels",
-	"title": "github/csinva/imodels",
-	"url": " https://rseng.github.io/software/repository/github/csinva/imodels",
-	"content": "Interpretable ML package 🔍 for concise, transparent, and accurate predictive modeling (sklearn-compatible)."
+	"github/bancaditalia/black-it": {
+	"id": "github/bancaditalia/black-it",
+	"title": "github/bancaditalia/black-it",
+	"url": " https://rseng.github.io/software/repository/github/bancaditalia/black-it",
+	"content": "Black-box abm calibration kit by the Bank of Italy"
 	},
-	"github/jiangyuts/facetclumps": {
-	"id": "github/jiangyuts/facetclumps",
-	"title": "github/jiangyuts/facetclumps",
-	"url": " https://rseng.github.io/software/repository/github/jiangyuts/facetclumps",
-	"content": "FacetClumps: A molecular clump detection algorithm based on Facet model"
+	"github/biomed-AI/GraphBepi": {
+	"id": "github/biomed-AI/GraphBepi",
+	"title": "github/biomed-AI/GraphBepi",
+	"url": " https://rseng.github.io/software/repository/github/biomed-AI/GraphBepi",
+	"content": "None"
 	},
-	"github/Parsl/parsl": {
-	"id": "github/Parsl/parsl",
-	"title": "github/Parsl/parsl",
-	"url": " https://rseng.github.io/software/repository/github/Parsl/parsl",
-	"content": "Parsl - Parallel Scripting Library"
+	"github/rhenanbartels/hrv": {
+	"id": "github/rhenanbartels/hrv",
+	"title": "github/rhenanbartels/hrv",
+	"url": " https://rseng.github.io/software/repository/github/rhenanbartels/hrv",
+	"content": "A Python package for heart rate variability analysis"
 	},
-	"github/Brauckhoff/biopixR": {
-	"id": "github/Brauckhoff/biopixR",
-	"title": "github/Brauckhoff/biopixR",
-	"url": " https://rseng.github.io/software/repository/github/Brauckhoff/biopixR",
-	"content": "R Package for bioimage analysis"
+	"github/mkelley/zchecker": {
+	"id": "github/mkelley/zchecker",
+	"title": "github/mkelley/zchecker",
+	"url": " https://rseng.github.io/software/repository/github/mkelley/zchecker",
+	"content": "ZTF moving target checker for short lists of moving targets"
 	},
-	"github/bharathramh/STRIDE-DB_Codes": {
-	"id": "github/bharathramh/STRIDE-DB_Codes",
-	"title": "github/bharathramh/STRIDE-DB_Codes",
-	"url": " https://rseng.github.io/software/repository/github/bharathramh/STRIDE-DB_Codes",
-	"content": "None"
+	"github/mkelley/calviacat": {
+	"id": "github/mkelley/calviacat",
+	"title": "github/mkelley/calviacat",
+	"url": " https://rseng.github.io/software/repository/github/mkelley/calviacat",
+	"content": "Calibrate star photometry by comparison to a catalog."
 	},
-	"github/mivp/encube": {
-	"id": "github/mivp/encube",
-	"title": "github/mivp/encube",
-	"url": " https://rseng.github.io/software/repository/github/mivp/encube",
-	"content": "Encube: large-scale comparative visulisation of sets of multidimensional data"
+	"github/CompGenomeLab/boquila": {
+	"id": "github/CompGenomeLab/boquila",
+	"title": "github/CompGenomeLab/boquila",
+	"url": " https://rseng.github.io/software/repository/github/CompGenomeLab/boquila",
+	"content": "NGS read simulator to eliminate read nucleotide bias in sequence analysis."
 	},
-	"github/mnets/pymnet": {
-	"id": "github/mnets/pymnet",
-	"title": "github/mnets/pymnet",
-	"url": " https://rseng.github.io/software/repository/github/mnets/pymnet",
-	"content": "The original library for analyzing multilayer networks."
+	"github/ggonnella/gfapy": {
+	"id": "github/ggonnella/gfapy",
+	"title": "github/ggonnella/gfapy",
+	"url": " https://rseng.github.io/software/repository/github/ggonnella/gfapy",
+	"content": "Gfapy: a flexible and extensible software library for handling sequence graphs in Python"
 	},
-	"github/iquasere/UPIMAPI": {
-	"id": "github/iquasere/UPIMAPI",
-	"title": "github/iquasere/UPIMAPI",
-	"url": " https://rseng.github.io/software/repository/github/iquasere/UPIMAPI",
-	"content": "UniProt Id Mapping through API"
+	"github/ggonnella/rgfa": {
+	"id": "github/ggonnella/rgfa",
+	"title": "github/ggonnella/rgfa",
+	"url": " https://rseng.github.io/software/repository/github/ggonnella/rgfa",
+	"content": "Ruby library for handling GFA files"
 	},
-	"github/lmcinnes/umap": {
-	"id": "github/lmcinnes/umap",
-	"title": "github/lmcinnes/umap",
-	"url": " https://rseng.github.io/software/repository/github/lmcinnes/umap",
-	"content": "Uniform Manifold Approximation and Projection"
+	"github/ggonnella/fastsubtrees": {
+	"id": "github/ggonnella/fastsubtrees",
+	"title": "github/ggonnella/fastsubtrees",
+	"url": " https://rseng.github.io/software/repository/github/ggonnella/fastsubtrees",
+	"content": "Python library and command line script , for fast extraction of subtrees of fairly large trees, consisting of millions of nodes, such as the NCBI taxonomy tree."
 	},
-	"github/JuliaLang/julia": {
-	"id": "github/JuliaLang/julia",
-	"title": "github/JuliaLang/julia",
-	"url": " https://rseng.github.io/software/repository/github/JuliaLang/julia",
-	"content": "The Julia Language: A fresh approach to technical computing."
+	"github/kim554/wdec": {
+	"id": "github/kim554/wdec",
+	"title": "github/kim554/wdec",
+	"url": " https://rseng.github.io/software/repository/github/kim554/wdec",
+	"content": "White Dwarf Evolution Code"
 	},
-	"github/DrJieZheng/meanoffset": {
-	"id": "github/DrJieZheng/meanoffset",
-	"title": "github/DrJieZheng/meanoffset",
-	"url": " https://rseng.github.io/software/repository/github/DrJieZheng/meanoffset",
+	"github/cvbuchem/LavAtmos": {
+	"id": "github/cvbuchem/LavAtmos",
+	"title": "github/cvbuchem/LavAtmos",
+	"url": " https://rseng.github.io/software/repository/github/cvbuchem/LavAtmos",
+	"content": "This code performs gas-melt equilibrium calculations for a given temperature and melt composition."
+	},
+	"github/prmunday/Immunolyser": {
+	"id": "github/prmunday/Immunolyser",
+	"title": "github/prmunday/Immunolyser",
+	"url": " https://rseng.github.io/software/repository/github/prmunday/Immunolyser",
 	"content": "None"
 	},
-	"github/sandmanns/CopyDetective": {
-	"id": "github/sandmanns/CopyDetective",
-	"title": "github/sandmanns/CopyDetective",
-	"url": " https://rseng.github.io/software/repository/github/sandmanns/CopyDetective",
-	"content": "Detection threshold aware CNV Calling in NGS data"
+	"github/bommert/stabm": {
+	"id": "github/bommert/stabm",
+	"title": "github/bommert/stabm",
+	"url": " https://rseng.github.io/software/repository/github/bommert/stabm",
+	"content": "Stability measures"
 	},
-	"github/psi4/psi4": {
-	"id": "github/psi4/psi4",
-	"title": "github/psi4/psi4",
-	"url": " https://rseng.github.io/software/repository/github/psi4/psi4",
-	"content": "Open-Source Quantum Chemistry – an electronic structure package in C++ driven by Python"
+	"github/FEniCS/ffcx": {
+	"id": "github/FEniCS/ffcx",
+	"title": "github/FEniCS/ffcx",
+	"url": " https://rseng.github.io/software/repository/github/FEniCS/ffcx",
+	"content": "Next generation FEniCS Form Compiler"
 	},
-	"github/mraveri/tensiometer": {
-	"id": "github/mraveri/tensiometer",
-	"title": "github/mraveri/tensiometer",
-	"url": " https://rseng.github.io/software/repository/github/mraveri/tensiometer",
-	"content": "None"
+	"github/FEniCS/basix": {
+	"id": "github/FEniCS/basix",
+	"title": "github/FEniCS/basix",
+	"url": " https://rseng.github.io/software/repository/github/FEniCS/basix",
+	"content": "FEniCS finite element basis evaluation library"
 	},
-	"github/simple-crypto/SCALib": {
-	"id": "github/simple-crypto/SCALib",
-	"title": "github/simple-crypto/SCALib",
-	"url": " https://rseng.github.io/software/repository/github/simple-crypto/SCALib",
-	"content": "Side-Channel Analysis Library"
+	"github/songningqiang/CosmoLED": {
+	"id": "github/songningqiang/CosmoLED",
+	"title": "github/songningqiang/CosmoLED",
+	"url": " https://rseng.github.io/software/repository/github/songningqiang/CosmoLED",
+	"content": "None"
 	},
-	"github/merenlab/anvio": {
-	"id": "github/merenlab/anvio",
-	"title": "github/merenlab/anvio",
-	"url": " https://rseng.github.io/software/repository/github/merenlab/anvio",
-	"content": "An analysis and visualization platform for &#39;omics data"
+	"github/coolneighbors/unwise-verse": {
+	"id": "github/coolneighbors/unwise-verse",
+	"title": "github/coolneighbors/unwise-verse",
+	"url": " https://rseng.github.io/software/repository/github/coolneighbors/unwise-verse",
+	"content": "Integrated flipbook / panoptes pipeline"
 	},
-	"github/radio1988/OneStopRNAseq": {
-	"id": "github/radio1988/OneStopRNAseq",
-	"title": "github/radio1988/OneStopRNAseq",
-	"url": " https://rseng.github.io/software/repository/github/radio1988/OneStopRNAseq",
+	"github/wangchao-malab/DeepAc4C": {
+	"id": "github/wangchao-malab/DeepAc4C",
+	"title": "github/wangchao-malab/DeepAc4C",
+	"url": " https://rseng.github.io/software/repository/github/wangchao-malab/DeepAc4C",
 	"content": "None"
 	},
-	"github/sheneman/clearcut": {
-	"id": "github/sheneman/clearcut",
-	"title": "github/sheneman/clearcut",
-	"url": " https://rseng.github.io/software/repository/github/sheneman/clearcut",
-	"content": "This is clearcut, the reference implementation for the Relaxed Neighbor Joining algorithm."
+	"github/RuthAngus/stardate": {
+	"id": "github/RuthAngus/stardate",
+	"title": "github/RuthAngus/stardate",
+	"url": " https://rseng.github.io/software/repository/github/RuthAngus/stardate",
+	"content": "Combining dating methods for better stellar ages"
+	},
+	"github/RuthAngus/SIPK2": {
+	"id": "github/RuthAngus/SIPK2",
+	"title": "github/RuthAngus/SIPK2",
+	"url": " https://rseng.github.io/software/repository/github/RuthAngus/SIPK2",
+	"content": "Systematics-Insensitive Periodograms for K2"
 	},
-	"github/BaroudLab/Griottes": {
-	"id": "github/BaroudLab/Griottes",
-	"title": "github/BaroudLab/Griottes",
-	"url": " https://rseng.github.io/software/repository/github/BaroudLab/Griottes",
-	"content": "Python program to generate NetworkX graphs from segmented images."
+	"github/RuthAngus/gprotation": {
+	"id": "github/RuthAngus/gprotation",
+	"title": "github/RuthAngus/gprotation",
+	"url": " https://rseng.github.io/software/repository/github/RuthAngus/gprotation",
+	"content": "Measuring stellar rotation periods with Gaussian processes"
 	},
-	"github/mriener/gausspyplus": {
-	"id": "github/mriener/gausspyplus",
-	"title": "github/mriener/gausspyplus",
-	"url": " https://rseng.github.io/software/repository/github/mriener/gausspyplus",
-	"content": "Fully automated Gaussian decomposition package for emission line spectra"
+	"github/davi-rodrigues/NAVanalysis": {
+	"id": "github/davi-rodrigues/NAVanalysis",
+	"title": "github/davi-rodrigues/NAVanalysis",
+	"url": " https://rseng.github.io/software/repository/github/davi-rodrigues/NAVanalysis",
+	"content": "Normalized Additional Velocity analysis"
 	},
-	"github/mathLab/PINA": {
-	"id": "github/mathLab/PINA",
-	"title": "github/mathLab/PINA",
-	"url": " https://rseng.github.io/software/repository/github/mathLab/PINA",
-	"content": "Physics-Informed Neural networks for Advanced modeling"
+	"github/davi-rodrigues/CCBH-Numerics": {
+	"id": "github/davi-rodrigues/CCBH-Numerics",
+	"title": "github/davi-rodrigues/CCBH-Numerics",
+	"url": " https://rseng.github.io/software/repository/github/davi-rodrigues/CCBH-Numerics",
+	"content": "Using gravitational wave data, CCBH-Numerics computes the probability of the existence of a single cosmologically coupled black hole with a formation mass below a specified threshold. This tool was developed alongside the paper by Amendola, Rodrigues, Kumar, and Quartin, published in MNRAS in 2024"
 	},
-	"github/FZJ-IEK3-VSA/ETHOS_PeNALPS": {
-	"id": "github/FZJ-IEK3-VSA/ETHOS_PeNALPS",
-	"title": "github/FZJ-IEK3-VSA/ETHOS_PeNALPS",
-	"url": " https://rseng.github.io/software/repository/github/FZJ-IEK3-VSA/ETHOS_PeNALPS",
-	"content": "Petri Net Agent based Load Profile Simulator"
+	"github/ireis/PRF": {
+	"id": "github/ireis/PRF",
+	"title": "github/ireis/PRF",
+	"url": " https://rseng.github.io/software/repository/github/ireis/PRF",
+	"content": "Probabilistic Random Forest: A machine learning algorithm for noisy datasets"
 	},
-	"github/FZJ-IEK3-VSA/LoadProfileGenerator": {
-	"id": "github/FZJ-IEK3-VSA/LoadProfileGenerator",
-	"title": "github/FZJ-IEK3-VSA/LoadProfileGenerator",
-	"url": " https://rseng.github.io/software/repository/github/FZJ-IEK3-VSA/LoadProfileGenerator",
-	"content": "Program for generating load curves for residential consumers. Agentbased and extremly detailed."
+	"github/isoverse/isoreader": {
+	"id": "github/isoverse/isoreader",
+	"title": "github/isoverse/isoreader",
+	"url": " https://rseng.github.io/software/repository/github/isoverse/isoreader",
+	"content": "Read IRMS (Isotope Ratio Mass Spectrometry) data files into R"
 	},
-	"github/fwhigh/stellar-locus-regression": {
-	"id": "github/fwhigh/stellar-locus-regression",
-	"title": "github/fwhigh/stellar-locus-regression",
-	"url": " https://rseng.github.io/software/repository/github/fwhigh/stellar-locus-regression",
-	"content": "Automatically exported from code.google.com/p/stellar-locus-regression"
+	"github/raufs/skDER": {
+	"id": "github/raufs/skDER",
+	"title": "github/raufs/skDER",
+	"url": " https://rseng.github.io/software/repository/github/raufs/skDER",
+	"content": "skDER: efficient &amp; high-resolution dereplication of microbial genomes to select representatives for comparative genomics and metagenomics. "
 	},
-	"github/SebOliver/PCA": {
-	"id": "github/SebOliver/PCA",
-	"title": "github/SebOliver/PCA",
-	"url": " https://rseng.github.io/software/repository/github/SebOliver/PCA",
-	"content": "The folders in this file are those discussed in the paper: &#34;Principal Component Analysis and Radiative Transfer modelling of Spitzer IRS Spectra of Ultra Luminous Infrared Galaxies &#34; Hurley et al. 2012 Monthly Notices of the Royal Astronomical Society, 424 (3). pp. 2069-2078. ISSN 0035-8711 "
+	"github/gtw2i/GA-Galaxy": {
+	"id": "github/gtw2i/GA-Galaxy",
+	"title": "github/gtw2i/GA-Galaxy",
+	"url": " https://rseng.github.io/software/repository/github/gtw2i/GA-Galaxy",
+	"content": "None"
 	},
-	"github/pierrehoudayer/RUBIS": {
-	"id": "github/pierrehoudayer/RUBIS",
-	"title": "github/pierrehoudayer/RUBIS",
-	"url": " https://rseng.github.io/software/repository/github/pierrehoudayer/RUBIS",
-	"content": "Rotation code Using Barotropy conservation over Isopotential Surfaces (RUBIS)"
+	"github/cnsetzer/kilopop": {
+	"id": "github/cnsetzer/kilopop",
+	"title": "github/cnsetzer/kilopop",
+	"url": " https://rseng.github.io/software/repository/github/cnsetzer/kilopop",
+	"content": "Binary neutron star (BNS) population of optical kilonovae (kNe)."
 	},
-	"github/ngltr/sinaps": {
-	"id": "github/ngltr/sinaps",
-	"title": "github/ngltr/sinaps",
-	"url": " https://rseng.github.io/software/repository/github/ngltr/sinaps",
+	"github/ECP-WarpX/WarpX": {
+	"id": "github/ECP-WarpX/WarpX",
+	"title": "github/ECP-WarpX/WarpX",
+	"url": " https://rseng.github.io/software/repository/github/ECP-WarpX/WarpX",
+	"content": "WarpX is an advanced, time-based electromagnetic &amp; electrostatic Particle-In-Cell code."
+	},
+	"github/schulze61/RhoPop": {
+	"id": "github/schulze61/RhoPop",
+	"title": "github/schulze61/RhoPop",
+	"url": " https://rseng.github.io/software/repository/github/schulze61/RhoPop",
 	"content": "None"
 	},
-	"github/LDEO-CREW/Pythonic-DISORT": {
-	"id": "github/LDEO-CREW/Pythonic-DISORT",
-	"title": "github/LDEO-CREW/Pythonic-DISORT",
-	"url": " https://rseng.github.io/software/repository/github/LDEO-CREW/Pythonic-DISORT",
-	"content": "Discrete Ordinates Solver for the (1D) Radiative Transfer Equation in a single or multi-layer plane-parallel atmosphere. Coded entirely in Python 3. Based on Stamnes&#39; FORTRAN DISORT (see references in the Jupyter Notebook) and has its main features."
+	"github/gourabghoshroy/MPVNN": {
+	"id": "github/gourabghoshroy/MPVNN",
+	"title": "github/gourabghoshroy/MPVNN",
+	"url": " https://rseng.github.io/software/repository/github/gourabghoshroy/MPVNN",
+	"content": "MUTATED PATHWAY VISIBLE NEURAL NETWORK FOR CANCER SPECIFIC SURVIVAL RISK PREDICTION"
 	},
-	"github/privong/pyMCspearman": {
-	"id": "github/privong/pyMCspearman",
-	"title": "github/privong/pyMCspearman",
-	"url": " https://rseng.github.io/software/repository/github/privong/pyMCspearman",
-	"content": "Monte carlo calculation of Spearman&#39;s rank correlation coefficient with uncertainties. Following Curran (2014)"
+	"github/devries/analytic_infall": {
+	"id": "github/devries/analytic_infall",
+	"title": "github/devries/analytic_infall",
+	"url": " https://rseng.github.io/software/repository/github/devries/analytic_infall",
+	"content": "Analytic 1-D radiative transfer model of blue-asymmetric spectral line profiles from infalling molecular clouds. The model is presented in the paper, &#34;Molecular Line Profile Fitting with Analytic Radiative Transfer Models&#34; by De Vries &amp; Myers (2005)."
 	},
-	"github/privong/pymccorrelation": {
-	"id": "github/privong/pymccorrelation",
-	"title": "github/privong/pymccorrelation",
-	"url": " https://rseng.github.io/software/repository/github/privong/pymccorrelation",
-	"content": "Correlation coefficients with uncertainties"
+	"github/KolmogorovLab/Severus": {
+	"id": "github/KolmogorovLab/Severus",
+	"title": "github/KolmogorovLab/Severus",
+	"url": " https://rseng.github.io/software/repository/github/KolmogorovLab/Severus",
+	"content": "A tool for somatic structural variant calling using long reads"
 	},
-	"github/rramadeu/AGHmatrix": {
-	"id": "github/rramadeu/AGHmatrix",
-	"title": "github/rramadeu/AGHmatrix",
-	"url": " https://rseng.github.io/software/repository/github/rramadeu/AGHmatrix",
-	"content": "An R package to compute relationship matrices for diploid and autopolyploid species"
+	"github/Junwu302/HiFun": {
+	"id": "github/Junwu302/HiFun",
+	"title": "github/Junwu302/HiFun",
+	"url": " https://rseng.github.io/software/repository/github/Junwu302/HiFun",
+	"content": "Homology Independent Protein Function prediction on Protein-Language Self-Attention Model"
 	},
-	"github/planck-npipe/hillipop": {
-	"id": "github/planck-npipe/hillipop",
-	"title": "github/planck-npipe/hillipop",
-	"url": " https://rseng.github.io/software/repository/github/planck-npipe/hillipop",
-	"content": "A cobaya high-ell likelihood polarized for planck 2020 data (NPIPE release)"
+	"github/ajohnson-uoregon/llvm-project": {
+	"id": "github/ajohnson-uoregon/llvm-project",
+	"title": "github/ajohnson-uoregon/llvm-project",
+	"url": " https://rseng.github.io/software/repository/github/ajohnson-uoregon/llvm-project",
+	"content": "The LLVM Project is a collection of modular and reusable compiler and toolchain technologies. Note: the repository does not accept github pull requests at this moment. Please submit your patches at http://reviews.llvm.org."
 	},
-	"github/planck-npipe/lollipop": {
-	"id": "github/planck-npipe/lollipop",
-	"title": "github/planck-npipe/lollipop",
-	"url": " https://rseng.github.io/software/repository/github/planck-npipe/lollipop",
-	"content": "A cobaya low-ell likelihood polarized for planck 2020 data (NPIPE release)"
+	"github/wilkelab/Opfi": {
+	"id": "github/wilkelab/Opfi",
+	"title": "github/wilkelab/Opfi",
+	"url": " https://rseng.github.io/software/repository/github/wilkelab/Opfi",
+	"content": "A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets."
 	},
-	"github/dpryan79/libBigWig": {
-	"id": "github/dpryan79/libBigWig",
-	"title": "github/dpryan79/libBigWig",
-	"url": " https://rseng.github.io/software/repository/github/dpryan79/libBigWig",
-	"content": "A C library for handling bigWig files"
+	"github/Kingsford-Group/scallop": {
+	"id": "github/Kingsford-Group/scallop",
+	"title": "github/Kingsford-Group/scallop",
+	"url": " https://rseng.github.io/software/repository/github/Kingsford-Group/scallop",
+	"content": "Scallop is a reference-based transcriptome assembler for RNA-seq"
 	},
-	"github/dpryan79/pyBigWig": {
-	"id": "github/dpryan79/pyBigWig",
-	"title": "github/dpryan79/pyBigWig",
-	"url": " https://rseng.github.io/software/repository/github/dpryan79/pyBigWig",
-	"content": "A python extension for quick access to bigWig and bigBed files"
+	"github/ACEnglish/truvari": {
+	"id": "github/ACEnglish/truvari",
+	"title": "github/ACEnglish/truvari",
+	"url": " https://rseng.github.io/software/repository/github/ACEnglish/truvari",
+	"content": "Structural variant toolkit for VCFs"
 	},
-	"github/dpryan79/MethylDackel": {
-	"id": "github/dpryan79/MethylDackel",
-	"title": "github/dpryan79/MethylDackel",
-	"url": " https://rseng.github.io/software/repository/github/dpryan79/MethylDackel",
-	"content": "A (mostly) universal methylation extractor for BS-seq experiments."
+	"github/ANTsX/ANTs": {
+	"id": "github/ANTsX/ANTs",
+	"title": "github/ANTsX/ANTs",
+	"url": " https://rseng.github.io/software/repository/github/ANTsX/ANTs",
+	"content": "Advanced Normalization Tools (ANTs)  "
 	},
-	"github/guynir42/radon": {
-	"id": "github/guynir42/radon",
-	"title": "github/guynir42/radon",
-	"url": " https://rseng.github.io/software/repository/github/guynir42/radon",
-	"content": "Streak detection using the Fast Radon Transform"
+	"github/jessecambon/tidygeocoder": {
+	"id": "github/jessecambon/tidygeocoder",
+	"title": "github/jessecambon/tidygeocoder",
+	"url": " https://rseng.github.io/software/repository/github/jessecambon/tidygeocoder",
+	"content": "Geocoding Made Easy"
 	},
-	"github/aobr/gsf": {
-	"id": "github/aobr/gsf",
-	"title": "github/aobr/gsf",
-	"url": " https://rseng.github.io/software/repository/github/aobr/gsf",
-	"content": "galactic structure finder"
+	"github/samtools/htslib": {
+	"id": "github/samtools/htslib",
+	"title": "github/samtools/htslib",
+	"url": " https://rseng.github.io/software/repository/github/samtools/htslib",
+	"content": "C library for high-throughput sequencing data formats"
 	},
-	"github/microbioinformatic/Co-PATHOgenex": {
-	"id": "github/microbioinformatic/Co-PATHOgenex",
-	"title": "github/microbioinformatic/Co-PATHOgenex",
-	"url": " https://rseng.github.io/software/repository/github/microbioinformatic/Co-PATHOgenex",
-	"content": "Supporting scripts and files for R shiny app Co-PATHOgenex"
+	"github/samtools/bcftools": {
+	"id": "github/samtools/bcftools",
+	"title": "github/samtools/bcftools",
+	"url": " https://rseng.github.io/software/repository/github/samtools/bcftools",
+	"content": "This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html"
 	},
-	"github/AlphonsG/Rainbow-Optical-Flow-For-ALI": {
-	"id": "github/AlphonsG/Rainbow-Optical-Flow-For-ALI",
-	"title": "github/AlphonsG/Rainbow-Optical-Flow-For-ALI",
-	"url": " https://rseng.github.io/software/repository/github/AlphonsG/Rainbow-Optical-Flow-For-ALI",
-	"content": "Repository for software detailed in &#39;Rainbow: Automated Air-Liquid Interface Cell Culture Analysis Using Deep Optical Flow&#39; software paper. See Readme for more details."
+	"github/samtools/samtools": {
+	"id": "github/samtools/samtools",
+	"title": "github/samtools/samtools",
+	"url": " https://rseng.github.io/software/repository/github/samtools/samtools",
+	"content": "Tools (written in C using htslib) for manipulating next-generation sequencing data"
 	},
-	"github/weiliu123/PCLassoReg": {
-	"id": "github/weiliu123/PCLassoReg",
-	"title": "github/weiliu123/PCLassoReg",
-	"url": " https://rseng.github.io/software/repository/github/weiliu123/PCLassoReg",
-	"content": "None"
+	"github/samtools/htsjdk": {
+	"id": "github/samtools/htsjdk",
+	"title": "github/samtools/htsjdk",
+	"url": " https://rseng.github.io/software/repository/github/samtools/htsjdk",
+	"content": "A Java API for high-throughput sequencing data (HTS) formats."
 	},
-	"github/EMResearch/EvoMaster": {
-	"id": "github/EMResearch/EvoMaster",
-	"title": "github/EMResearch/EvoMaster",
-	"url": " https://rseng.github.io/software/repository/github/EMResearch/EvoMaster",
-	"content": "A tool for automatically generating system-level test cases. Currently targeting REST APIs."
+	"github/tribshms/tRIBS": {
+	"id": "github/tribshms/tRIBS",
+	"title": "github/tribshms/tRIBS",
+	"url": " https://rseng.github.io/software/repository/github/tribshms/tRIBS",
+	"content": "TIN-based Real-time Integrated Basin Simulator (tRIBS) Distributed Hydrological Model"
 	},
-	"github/CQCL/qujax": {
-	"id": "github/CQCL/qujax",
-	"title": "github/CQCL/qujax",
-	"url": " https://rseng.github.io/software/repository/github/CQCL/qujax",
-	"content": "Simulating quantum circuits with JAX"
+	"github/WelbornGroup/ELECTRIC": {
+	"id": "github/WelbornGroup/ELECTRIC",
+	"title": "github/WelbornGroup/ELECTRIC",
+	"url": " https://rseng.github.io/software/repository/github/WelbornGroup/ELECTRIC",
+	"content": "ELECTRIC: Electric fields Leveraged from multipole Expansion Calculations in Tinker Rapid Interface Code."
 	},
-	"github/YuSugihara/MutMap": {
-	"id": "github/YuSugihara/MutMap",
-	"title": "github/YuSugihara/MutMap",
-	"url": " https://rseng.github.io/software/repository/github/YuSugihara/MutMap",
-	"content": "MutMap pipeline to identify causative mutations responsible for a phenotype"
+	"github/henrycousins/gspa": {
+	"id": "github/henrycousins/gspa",
+	"title": "github/henrycousins/gspa",
+	"url": " https://rseng.github.io/software/repository/github/henrycousins/gspa",
+	"content": "Python implementation of gene set proximity analysis"
 	},
-	"github/Crick-CancerGenomics/ascat": {
-	"id": "github/Crick-CancerGenomics/ascat",
-	"title": "github/Crick-CancerGenomics/ascat",
-	"url": " https://rseng.github.io/software/repository/github/Crick-CancerGenomics/ascat",
-	"content": "ASCAT copy number R package"
+	"github/joglekara/VlaPy": {
+	"id": "github/joglekara/VlaPy",
+	"title": "github/joglekara/VlaPy",
+	"url": " https://rseng.github.io/software/repository/github/joglekara/VlaPy",
+	"content": "1D-1V Vlasov-Poisson(-Fokker-Planck) Plasma Physics Simulation Tool"
 	},
-	"github/trevisanj/PFANT": {
-	"id": "github/trevisanj/PFANT",
-	"title": "github/trevisanj/PFANT",
-	"url": " https://rseng.github.io/software/repository/github/trevisanj/PFANT",
-	"content": "Stellar Spectral Synthesis code for Astronomy"
+	"github/mecobpsu/bacseq": {
+	"id": "github/mecobpsu/bacseq",
+	"title": "github/mecobpsu/bacseq",
+	"url": " https://rseng.github.io/software/repository/github/mecobpsu/bacseq",
+	"content": "None"
 	},
-	"github/thomas0809/MolScribe": {
-	"id": "github/thomas0809/MolScribe",
-	"title": "github/thomas0809/MolScribe",
-	"url": " https://rseng.github.io/software/repository/github/thomas0809/MolScribe",
-	"content": "Robust Molecular Structure Recognition with Image-to-Graph Generation"
+	"github/rcsb/mmtf-python": {
+	"id": "github/rcsb/mmtf-python",
+	"title": "github/rcsb/mmtf-python",
+	"url": " https://rseng.github.io/software/repository/github/rcsb/mmtf-python",
+	"content": "The python implementation of the MMTF API, decoder and encoder."
 	},
-	"github/fmihpc/analysator": {
-	"id": "github/fmihpc/analysator",
-	"title": "github/fmihpc/analysator",
-	"url": " https://rseng.github.io/software/repository/github/fmihpc/analysator",
-	"content": "Python based package for analyzing vlsv files produced by Vlasiator"
+	"github/BrianAronson/birankr": {
+	"id": "github/BrianAronson/birankr",
+	"title": "github/BrianAronson/birankr",
+	"url": " https://rseng.github.io/software/repository/github/BrianAronson/birankr",
+	"content": "CRAN package for estimating various rank (centrality) measures of nodes in bipartite graphs (two-mode networks)."
 	},
-	"github/fmihpc/vlasiator": {
-	"id": "github/fmihpc/vlasiator",
-	"title": "github/fmihpc/vlasiator",
-	"url": " https://rseng.github.io/software/repository/github/fmihpc/vlasiator",
-	"content": "Vlasiator - ten letters you can count on"
+	"github/LiberTEM/LiberTEM": {
+	"id": "github/LiberTEM/LiberTEM",
+	"title": "github/LiberTEM/LiberTEM",
+	"url": " https://rseng.github.io/software/repository/github/LiberTEM/LiberTEM",
+	"content": "Open pixelated STEM framework"
 	},
-	"github/JannisHoch/copro": {
-	"id": "github/JannisHoch/copro",
-	"title": "github/JannisHoch/copro",
-	"url": " https://rseng.github.io/software/repository/github/JannisHoch/copro",
-	"content": "(ML) model for computing conflict risk from climate, environmental, and societal drivers."
+	"github/itpplasma/GORILLA": {
+	"id": "github/itpplasma/GORILLA",
+	"title": "github/itpplasma/GORILLA",
+	"url": " https://rseng.github.io/software/repository/github/itpplasma/GORILLA",
+	"content": "GORILLA: Guiding-center ORbit Integration with Local Linearization Approach"
+	},
+	"github/EdwardBerman/shopt": {
+	"id": "github/EdwardBerman/shopt",
+	"title": "github/EdwardBerman/shopt",
+	"url": " https://rseng.github.io/software/repository/github/EdwardBerman/shopt",
+	"content": "Shear Optimization with ShOpt.jl, a julia package for empirical point spread function characterizations"
 	},
 	"github/tbrown122387/pf": {
 	"id": "github/tbrown122387/pf",
@@ -19869,3041 +19599,3107 @@
 	"url": " https://rseng.github.io/software/repository/github/tbrown122387/pf",
 	"content": "PF: a header only template library for fast particle filtering!"
 	},
-	"github/el2718/FastQSL": {
-	"id": "github/el2718/FastQSL",
-	"title": "github/el2718/FastQSL",
-	"url": " https://rseng.github.io/software/repository/github/el2718/FastQSL",
-	"content": "None"
+	"github/KeplerGO/PyKE": {
+	"id": "github/KeplerGO/PyKE",
+	"title": "github/KeplerGO/PyKE",
+	"url": " https://rseng.github.io/software/repository/github/KeplerGO/PyKE",
+	"content": "Easy command line tools for Kepler, K2 &amp; TESS data analysis."
 	},
-	"github/CM2S/piglot": {
-	"id": "github/CM2S/piglot",
-	"title": "github/CM2S/piglot",
-	"url": " https://rseng.github.io/software/repository/github/CM2S/piglot",
-	"content": "A package for the optimisation of numerical responses"
+	"github/KeplerGO/k2mosaic": {
+	"id": "github/KeplerGO/k2mosaic",
+	"title": "github/KeplerGO/k2mosaic",
+	"url": " https://rseng.github.io/software/repository/github/KeplerGO/k2mosaic",
+	"content": "Mosaic Target Pixel Files (TPFs) obtained by NASA&#39;s Kepler/K2 missions into CCD-sized images and movies."
 	},
-	"github/skendrew/milkywayproject_triggering": {
-	"id": "github/skendrew/milkywayproject_triggering",
-	"title": "github/skendrew/milkywayproject_triggering",
-	"url": " https://rseng.github.io/software/repository/github/skendrew/milkywayproject_triggering",
-	"content": "Code to calculate correlation functions for two (astrophysical) catalogue datasets"
+	"github/KeplerGO/K2fov": {
+	"id": "github/KeplerGO/K2fov",
+	"title": "github/KeplerGO/K2fov",
+	"url": " https://rseng.github.io/software/repository/github/KeplerGO/K2fov",
+	"content": "Check whether targets are in the field of view of NASA&#39;s K2 space telescope"
 	},
-	"github/skendrew/midIR_sensitivity": {
-	"id": "github/skendrew/midIR_sensitivity",
-	"title": "github/skendrew/midIR_sensitivity",
-	"url": " https://rseng.github.io/software/repository/github/skendrew/midIR_sensitivity",
-	"content": "Code to calculate the sensitivity of a ground-based instrument for astronomy at mid-infrared wavelengths (3-15 micron). Written for the METIS instrument for the E-ELT but easily customisable."
+	"github/KeplerGO/kadenza": {
+	"id": "github/KeplerGO/kadenza",
+	"title": "github/KeplerGO/kadenza",
+	"url": " https://rseng.github.io/software/repository/github/KeplerGO/kadenza",
+	"content": "Converts raw cadence target data from the Kepler space telescope into astronomer-friendly FITS files."
 	},
-	"github/dellytools/sansa": {
-	"id": "github/dellytools/sansa",
-	"title": "github/dellytools/sansa",
-	"url": " https://rseng.github.io/software/repository/github/dellytools/sansa",
-	"content": "Structural variant annotation"
+	"github/mlafarga/raccoon": {
+	"id": "github/mlafarga/raccoon",
+	"title": "github/mlafarga/raccoon",
+	"url": " https://rseng.github.io/software/repository/github/mlafarga/raccoon",
+	"content": "None"
 	},
-	"github/dellytools/delly": {
-	"id": "github/dellytools/delly",
-	"title": "github/dellytools/delly",
-	"url": " https://rseng.github.io/software/repository/github/dellytools/delly",
-	"content": "DELLY2: Structural variant discovery by integrated paired-end and split-read analysis"
+	"github/hover2pi/SEDkit": {
+	"id": "github/hover2pi/SEDkit",
+	"title": "github/hover2pi/SEDkit",
+	"url": " https://rseng.github.io/software/repository/github/hover2pi/SEDkit",
+	"content": "Spectral energy distribution construction and analysis tools"
 	},
-	"github/lzx325/DeeReCT-APA-repo": {
-	"id": "github/lzx325/DeeReCT-APA-repo",
-	"title": "github/lzx325/DeeReCT-APA-repo",
-	"url": " https://rseng.github.io/software/repository/github/lzx325/DeeReCT-APA-repo",
-	"content": "None"
+	"github/nemesiscode/radtrancode": {
+	"id": "github/nemesiscode/radtrancode",
+	"title": "github/nemesiscode/radtrancode",
+	"url": " https://rseng.github.io/software/repository/github/nemesiscode/radtrancode",
+	"content": "This is the repository of the NEMESIS/RADTRANS project. It is described on the associated web page listed here."
 	},
-	"github/samaygarg/fuelcell": {
-	"id": "github/samaygarg/fuelcell",
-	"title": "github/samaygarg/fuelcell",
-	"url": " https://rseng.github.io/software/repository/github/samaygarg/fuelcell",
-	"content": "Electrochemical data analysis package"
+	"github/hmtabernero/SteParSyn": {
+	"id": "github/hmtabernero/SteParSyn",
+	"title": "github/hmtabernero/SteParSyn",
+	"url": " https://rseng.github.io/software/repository/github/hmtabernero/SteParSyn",
+	"content": "SteParSyn is an automatic code used to infer stellar atmospheric parameters using the spectral synthesis method. "
 	},
-	"github/wonderful1/CNV-PG": {
-	"id": "github/wonderful1/CNV-PG",
-	"title": "github/wonderful1/CNV-PG",
-	"url": " https://rseng.github.io/software/repository/github/wonderful1/CNV-PG",
-	"content": "CNV-PG: a machine-learning framework for accurate copy number variation predicting and genotyping"
+	"github/pyplati/platipy": {
+	"id": "github/pyplati/platipy",
+	"title": "github/pyplati/platipy",
+	"url": " https://rseng.github.io/software/repository/github/pyplati/platipy",
+	"content": "Processing Library and Analysis Toolkit for Medical Imaging in Python"
 	},
-	"github/hdeeg/KvW": {
-	"id": "github/hdeeg/KvW",
-	"title": "github/hdeeg/KvW",
-	"url": " https://rseng.github.io/software/repository/github/hdeeg/KvW",
-	"content": "Kwee Van Woerden algorithm for eclipse or transit minimum timing, with improved error calculation"
+	"github/liuhong-jia/scAnno": {
+	"id": "github/liuhong-jia/scAnno",
+	"title": "github/liuhong-jia/scAnno",
+	"url": " https://rseng.github.io/software/repository/github/liuhong-jia/scAnno",
+	"content": "None"
 	},
-	"github/daissi/thesias": {
-	"id": "github/daissi/thesias",
-	"title": "github/daissi/thesias",
-	"url": " https://rseng.github.io/software/repository/github/daissi/thesias",
-	"content": "THESIAS: Testing Haplotype Effects In Association Studies"
+	"github/hanyk/BayeSED3": {
+	"id": "github/hanyk/BayeSED3",
+	"title": "github/hanyk/BayeSED3",
+	"url": " https://rseng.github.io/software/repository/github/hanyk/BayeSED3",
+	"content": "A code for Bayesian SED synthesis and analysis of galaxies and AGNs"
 	},
-	"github/Someone789/galax2d": {
-	"id": "github/Someone789/galax2d",
-	"title": "github/Someone789/galax2d",
-	"url": " https://rseng.github.io/software/repository/github/Someone789/galax2d",
-	"content": "matlab or octave code to compute the 2D stationary solution of the isothermal Euler equations of gas dynamics in a rotating galaxy with a weak bar"
+	"github/VU-BEAM-Lab/GENRE": {
+	"id": "github/VU-BEAM-Lab/GENRE",
+	"title": "github/VU-BEAM-Lab/GENRE",
+	"url": " https://rseng.github.io/software/repository/github/VU-BEAM-Lab/GENRE",
+	"content": "None"
 	},
-	"github/wjakethompson/measr": {
-	"id": "github/wjakethompson/measr",
-	"title": "github/wjakethompson/measr",
-	"url": " https://rseng.github.io/software/repository/github/wjakethompson/measr",
-	"content": "R package for the Bayesian estimation of diagnostic classification models using Stan"
+	"github/puregome/notebooks": {
+	"id": "github/puregome/notebooks",
+	"title": "github/puregome/notebooks",
+	"url": " https://rseng.github.io/software/repository/github/puregome/notebooks",
+	"content": "Notebooks of the PuReGoMe Project of the Netherlands eScience Center and Utrecht University."
 	},
-	"github/mlinderm/npsv": {
-	"id": "github/mlinderm/npsv",
-	"title": "github/mlinderm/npsv",
-	"url": " https://rseng.github.io/software/repository/github/mlinderm/npsv",
-	"content": "Non-parametric structural variant genotyper"
+	"github/obertscheiderfhwn/RTMsim": {
+	"id": "github/obertscheiderfhwn/RTMsim",
+	"title": "github/obertscheiderfhwn/RTMsim",
+	"url": " https://rseng.github.io/software/repository/github/obertscheiderfhwn/RTMsim",
+	"content": "RTMsim - A Julia module for filling simulations in Resin Transfer Moulding"
 	},
-	"github/tlancian/bio_cs": {
-	"id": "github/tlancian/bio_cs",
-	"title": "github/tlancian/bio_cs",
-	"url": " https://rseng.github.io/software/repository/github/tlancian/bio_cs",
-	"content": "&#34;Contrast Subgraphs Allow Comparing Homogeneous and Heterogeneous Networks Derived from Omics Data&#34; - T. Lanciano, A. Savino, F. Porcu, D. Cittaro, F. Bonchi, P. Provero"
+	"github/Dfam-consortium/RepeatModeler": {
+	"id": "github/Dfam-consortium/RepeatModeler",
+	"title": "github/Dfam-consortium/RepeatModeler",
+	"url": " https://rseng.github.io/software/repository/github/Dfam-consortium/RepeatModeler",
+	"content": "De-Novo Repeat Discovery Tool"
 	},
-	"github/cdslaborg/paramonte": {
-	"id": "github/cdslaborg/paramonte",
-	"title": "github/cdslaborg/paramonte",
-	"url": " https://rseng.github.io/software/repository/github/cdslaborg/paramonte",
-	"content": "ParaMonte: Plain Powerful Parallel Monte Carlo and MCMC Library for Python, MATLAB, Fortran, C++, C."
+	"github/ESMValGroup/ESMValCore": {
+	"id": "github/ESMValGroup/ESMValCore",
+	"title": "github/ESMValGroup/ESMValCore",
+	"url": " https://rseng.github.io/software/repository/github/ESMValGroup/ESMValCore",
+	"content": "ESMValTool Core: core functionalities for the ESMValTool"
 	},
-	"github/big-data-lab-team/spot": {
-	"id": "github/big-data-lab-team/spot",
-	"title": "github/big-data-lab-team/spot",
-	"url": " https://rseng.github.io/software/repository/github/big-data-lab-team/spot",
-	"content": "A set of tools to evaluate the reproducibility of computations"
+	"github/ESMValGroup/ESMValTool": {
+	"id": "github/ESMValGroup/ESMValTool",
+	"title": "github/ESMValGroup/ESMValTool",
+	"url": " https://rseng.github.io/software/repository/github/ESMValGroup/ESMValTool",
+	"content": "ESMValTool: A community diagnostic and performance metrics tool for routine evaluation of Earth system models in CMIP "
 	},
-	"github/biofold/ddgun": {
-	"id": "github/biofold/ddgun",
-	"title": "github/biofold/ddgun",
-	"url": " https://rseng.github.io/software/repository/github/biofold/ddgun",
-	"content": "predict stability change upon mutation"
+	"github/moustakas/iSEDfit": {
+	"id": "github/moustakas/iSEDfit",
+	"title": "github/moustakas/iSEDfit",
+	"url": " https://rseng.github.io/software/repository/github/moustakas/iSEDfit",
+	"content": "iSEDfit is a Bayesian spectral energy distribution fitting code designed to extract the physical properties of galaxies from broadband photometry."
 	},
-	"github/biofold/PhD-SNPg": {
-	"id": "github/biofold/PhD-SNPg",
-	"title": "github/biofold/PhD-SNPg",
-	"url": " https://rseng.github.io/software/repository/github/biofold/PhD-SNPg",
-	"content": "None"
+	"github/zhangzzk/forklens": {
+	"id": "github/zhangzzk/forklens",
+	"title": "github/zhangzzk/forklens",
+	"url": " https://rseng.github.io/software/repository/github/zhangzzk/forklens",
+	"content": "DL weak lensing shear"
 	},
-	"github/veg/tn93": {
-	"id": "github/veg/tn93",
-	"title": "github/veg/tn93",
-	"url": " https://rseng.github.io/software/repository/github/veg/tn93",
-	"content": "TN93 fast distance calculator"
+	"github/AstroVPK/kali": {
+	"id": "github/AstroVPK/kali",
+	"title": "github/AstroVPK/kali",
+	"url": " https://rseng.github.io/software/repository/github/AstroVPK/kali",
+	"content": "A library to model a time series as a Continuous-time ARMA process"
 	},
-	"github/veg/hivtrace": {
-	"id": "github/veg/hivtrace",
-	"title": "github/veg/hivtrace",
-	"url": " https://rseng.github.io/software/repository/github/veg/hivtrace",
-	"content": "None"
+	"github/Valcin/BE_HaPPy": {
+	"id": "github/Valcin/BE_HaPPy",
+	"title": "github/Valcin/BE_HaPPy",
+	"url": " https://rseng.github.io/software/repository/github/Valcin/BE_HaPPy",
+	"content": "Bias Emulator for Halo Power Spectrum "
 	},
-	"github/su2code/SU2": {
-	"id": "github/su2code/SU2",
-	"title": "github/su2code/SU2",
-	"url": " https://rseng.github.io/software/repository/github/su2code/SU2",
-	"content": "SU2: An Open-Source Suite for Multiphysics Simulation and Design"
+	"github/vaexio/vaex": {
+	"id": "github/vaexio/vaex",
+	"title": "github/vaexio/vaex",
+	"url": " https://rseng.github.io/software/repository/github/vaexio/vaex",
+	"content": "Out-of-Core hybrid Apache Arrow/NumPy DataFrame for Python, ML, visualization and exploration of big tabular data at a billion rows per second 🚀"
 	},
-	"github/xiaofengsong/pHisPred": {
-	"id": "github/xiaofengsong/pHisPred",
-	"title": "github/xiaofengsong/pHisPred",
-	"url": " https://rseng.github.io/software/repository/github/xiaofengsong/pHisPred",
-	"content": "A bioinformatic tool for identifying protein histidine phosphorylation sites"
+	"github/radis/radis": {
+	"id": "github/radis/radis",
+	"title": "github/radis/radis",
+	"url": " https://rseng.github.io/software/repository/github/radis/radis",
+	"content": "🌱 A fast line-by-line code for high-resolution infrared molecular spectra"
 	},
-	"github/djbard/ccogs": {
-	"id": "github/djbard/ccogs",
-	"title": "github/djbard/ccogs",
-	"url": " https://rseng.github.io/software/repository/github/djbard/ccogs",
-	"content": "Cosmological Calculations on GPUS. A collection of code used to perform calculations use in Cosmology studies and written for GPUs. "
+	"github/florisvb/PyNumDiff": {
+	"id": "github/florisvb/PyNumDiff",
+	"title": "github/florisvb/PyNumDiff",
+	"url": " https://rseng.github.io/software/repository/github/florisvb/PyNumDiff",
+	"content": "Methods for numerical differentiation of noisy data in python"
 	},
-	"github/PIK-LPJmL/lpjmlkit": {
-	"id": "github/PIK-LPJmL/lpjmlkit",
-	"title": "github/PIK-LPJmL/lpjmlkit",
-	"url": " https://rseng.github.io/software/repository/github/PIK-LPJmL/lpjmlkit",
-	"content": "A collection of basic functions to facilitate the work with the DGVM LPJmL hosted at the Potsdam Institute for Climate Impact Research.     It provides functions for running LPJmL, as well as reading, processing and writing model-related data such as inputs and outputs or configuration files."
+	"github/astroweaver/the_farmer": {
+	"id": "github/astroweaver/the_farmer",
+	"title": "github/astroweaver/the_farmer",
+	"url": " https://rseng.github.io/software/repository/github/astroweaver/the_farmer",
+	"content": "The Farmer"
 	},
-	"github/sfarrens/sfof": {
-	"id": "github/sfarrens/sfof",
-	"title": "github/sfarrens/sfof",
-	"url": " https://rseng.github.io/software/repository/github/sfarrens/sfof",
-	"content": "SFoF is a friends-of-friends galaxy cluster detection algorithm that operates in either spectroscopic or photometric redshift space. The linking parameters, both transverse and along the line-of-sight, change as a function of redshift to account for selection effects.  The code is written in C++ and implements OMP to loop through the photometric redshift bins."
+	"github/pierrepo/autoclassweb": {
+	"id": "github/pierrepo/autoclassweb",
+	"title": "github/pierrepo/autoclassweb",
+	"url": " https://rseng.github.io/software/repository/github/pierrepo/autoclassweb",
+	"content": "AutoClassWeb: a web app to run AutoClass C Bayesian clustering :package:  :rocket:"
 	},
-	"github/sfarrens/sf_deconvolve": {
-	"id": "github/sfarrens/sf_deconvolve",
-	"title": "github/sfarrens/sf_deconvolve",
-	"url": " https://rseng.github.io/software/repository/github/sfarrens/sf_deconvolve",
-	"content": "A Python code designed for PSF deconvolution using a low-rank approximation and sparsity. The code can handle a fixed PSF for the entire field or a stack of PSFs for each galaxy position."
+	"github/s-will/LocARNA": {
+	"id": "github/s-will/LocARNA",
+	"title": "github/s-will/LocARNA",
+	"url": " https://rseng.github.io/software/repository/github/s-will/LocARNA",
+	"content": "Alignment of RNAs"
 	},
-	"github/johnpaulett/python-hl7": {
-	"id": "github/johnpaulett/python-hl7",
-	"title": "github/johnpaulett/python-hl7",
-	"url": " https://rseng.github.io/software/repository/github/johnpaulett/python-hl7",
-	"content": "A simple library for parsing messages of Health Level 7 (HL7) version 2.x into Python objects."
+	"github/MCTwo/MCMAC": {
+	"id": "github/MCTwo/MCMAC",
+	"title": "github/MCTwo/MCMAC",
+	"url": " https://rseng.github.io/software/repository/github/MCTwo/MCMAC",
+	"content": "Monte Carlo Merger Analysis Code (MCMAC)"
 	},
-	"github/reneheller/pile-up": {
-	"id": "github/reneheller/pile-up",
-	"title": "github/reneheller/pile-up",
-	"url": " https://rseng.github.io/software/repository/github/reneheller/pile-up",
-	"content": "A gnuplot script for Monte Carlo simulations of disk and stellar tidal torques acting on hot Jupiters"
+	"github/yymao/abundancematching": {
+	"id": "github/yymao/abundancematching",
+	"title": "github/yymao/abundancematching",
+	"url": " https://rseng.github.io/software/repository/github/yymao/abundancematching",
+	"content": "A Python package for subhalo abundance matching (SHAM) with scatter."
 	},
-	"github/SwiftVISA/SwiftVISASwift": {
-	"id": "github/SwiftVISA/SwiftVISASwift",
-	"title": "github/SwiftVISA/SwiftVISASwift",
-	"url": " https://rseng.github.io/software/repository/github/SwiftVISA/SwiftVISASwift",
-	"content": "A Swift backend for communicating to instruments over TCPIP over the VISA protocol."
+	"github/deepsphere/deepsphere-cosmo-tf1": {
+	"id": "github/deepsphere/deepsphere-cosmo-tf1",
+	"title": "github/deepsphere/deepsphere-cosmo-tf1",
+	"url": " https://rseng.github.io/software/repository/github/deepsphere/deepsphere-cosmo-tf1",
+	"content": "A spherical convolutional neural network for cosmology (TFv1)."
 	},
-	"github/zizroc/villager": {
-	"id": "github/zizroc/villager",
-	"title": "github/zizroc/villager",
-	"url": " https://rseng.github.io/software/repository/github/zizroc/villager",
-	"content": "villager is an extensible agent based modeling (ABM) framework for the R language. It supports agents, agent aggregations and their associated resources, as well as flexible data management."
+	"github/raddleverse/MimiBRICK.jl": {
+	"id": "github/raddleverse/MimiBRICK.jl",
+	"title": "github/raddleverse/MimiBRICK.jl",
+	"url": " https://rseng.github.io/software/repository/github/raddleverse/MimiBRICK.jl",
+	"content": "None"
 	},
-	"github/cheerfuluser/tessreduce": {
-	"id": "github/cheerfuluser/tessreduce",
-	"title": "github/cheerfuluser/tessreduce",
-	"url": " https://rseng.github.io/software/repository/github/cheerfuluser/tessreduce",
-	"content": "Transient focused reduction for TESS data"
+	"github/hpparvi/opents": {
+	"id": "github/hpparvi/opents",
+	"title": "github/hpparvi/opents",
+	"url": " https://rseng.github.io/software/repository/github/hpparvi/opents",
+	"content": "Open exoplanet transit search pipeline"
 	},
-	"github/DynaSlum/satsense": {
-	"id": "github/DynaSlum/satsense",
-	"title": "github/DynaSlum/satsense",
-	"url": " https://rseng.github.io/software/repository/github/DynaSlum/satsense",
-	"content": "Satsense is a Python library for land use/cover classification using satellite imagery"
+	"github/hpparvi/PyTransit": {
+	"id": "github/hpparvi/PyTransit",
+	"title": "github/hpparvi/PyTransit",
+	"url": " https://rseng.github.io/software/repository/github/hpparvi/PyTransit",
+	"content": "Fast and easy exoplanet transit light curve modelling."
 	},
-	"github/benstahl92/deepSIP": {
-	"id": "github/benstahl92/deepSIP",
-	"title": "github/benstahl92/deepSIP",
-	"url": " https://rseng.github.io/software/repository/github/benstahl92/deepSIP",
-	"content": "Deep Learning of Supernova Ia Parameters"
+	"github/hpparvi/MuSCAT2_transit_pipeline": {
+	"id": "github/hpparvi/MuSCAT2_transit_pipeline",
+	"title": "github/hpparvi/MuSCAT2_transit_pipeline",
+	"url": " https://rseng.github.io/software/repository/github/hpparvi/MuSCAT2_transit_pipeline",
+	"content": "MuSCAT2 transit analysis pipeline"
 	},
-	"github/cjneely10/EukMetaSanity": {
-	"id": "github/cjneely10/EukMetaSanity",
-	"title": "github/cjneely10/EukMetaSanity",
-	"url": " https://rseng.github.io/software/repository/github/cjneely10/EukMetaSanity",
-	"content": "Structural and functional annotation of eukaryotic metagenome-assembled genomes"
+	"github/hpparvi/ldtk": {
+	"id": "github/hpparvi/ldtk",
+	"title": "github/hpparvi/ldtk",
+	"url": " https://rseng.github.io/software/repository/github/hpparvi/ldtk",
+	"content": "Python toolkit for calculating stellar limb darkening profiles and model-specific coefficients using the stellar atmosphere spectrum library by Husser et al. (2013). Described in Parviainen &amp; Aigrain, MNRAS 453, 3821–3826 (2015)."
 	},
-	"github/shahmoradi/grb_world": {
-	"id": "github/shahmoradi/grb_world",
-	"title": "github/shahmoradi/grb_world",
-	"url": " https://rseng.github.io/software/repository/github/shahmoradi/grb_world",
-	"content": "Containing codes for the SGRB and LGRB world models"
+	"github/ipython/ipython": {
+	"id": "github/ipython/ipython",
+	"title": "github/ipython/ipython",
+	"url": " https://rseng.github.io/software/repository/github/ipython/ipython",
+	"content": "Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc."
 	},
-	"github/ColdThunder/NR-code": {
-	"id": "github/ColdThunder/NR-code",
-	"title": "github/ColdThunder/NR-code",
-	"url": " https://rseng.github.io/software/repository/github/ColdThunder/NR-code",
-	"content": "Nonlinear reconstruction code"
+	"github/davidpamos/MultiModes": {
+	"id": "github/davidpamos/MultiModes",
+	"title": "github/davidpamos/MultiModes",
+	"url": " https://rseng.github.io/software/repository/github/davidpamos/MultiModes",
+	"content": "An efficient tool for the analysis of pulsating stars"
 	},
-	"github/dbuscher/pois": {
-	"id": "github/dbuscher/pois",
-	"title": "github/dbuscher/pois",
-	"url": " https://rseng.github.io/software/repository/github/dbuscher/pois",
-	"content": "Python framework simulating the data from a ground-based optical interferometer"
+	"github/CityU-AIM-Group/HTD": {
+	"id": "github/CityU-AIM-Group/HTD",
+	"title": "github/CityU-AIM-Group/HTD",
+	"url": " https://rseng.github.io/software/repository/github/CityU-AIM-Group/HTD",
+	"content": "[TIP&#39; 21] HTD: Heterogeneous Task Decoupling for Two-stage Object Detection"
 	},
-	"github/nansencenter/DAPPER": {
-	"id": "github/nansencenter/DAPPER",
-	"title": "github/nansencenter/DAPPER",
-	"url": " https://rseng.github.io/software/repository/github/nansencenter/DAPPER",
-	"content": "Data Assimilation with Python: a Package for Experimental Research"
+	"github/jstjohn/SeqPrep": {
+	"id": "github/jstjohn/SeqPrep",
+	"title": "github/jstjohn/SeqPrep",
+	"url": " https://rseng.github.io/software/repository/github/jstjohn/SeqPrep",
+	"content": "Tool for stripping adaptors and/or merging paired reads with overlap into single reads."
 	},
-	"github/hombit/freddi": {
-	"id": "github/hombit/freddi",
-	"title": "github/hombit/freddi",
-	"url": " https://rseng.github.io/software/repository/github/hombit/freddi",
-	"content": "Compute FRED light curves of LMXBs outbursts"
+	"github/gramos/imagetooth": {
+	"id": "github/gramos/imagetooth",
+	"title": "github/gramos/imagetooth",
+	"url": " https://rseng.github.io/software/repository/github/gramos/imagetooth",
+	"content": "This library allows to generate images of teeth for odontograms with tooth faces painted"
 	},
-	"github/OttoStruve/muler": {
-	"id": "github/OttoStruve/muler",
-	"title": "github/OttoStruve/muler",
-	"url": " https://rseng.github.io/software/repository/github/OttoStruve/muler",
-	"content": "A Python package for working with pipeline-produced spectra from IGRINS, HPF, and Keck NIRSPEC"
+	"github/Jacks0nJ/PyFPT": {
+	"id": "github/Jacks0nJ/PyFPT",
+	"title": "github/Jacks0nJ/PyFPT",
+	"url": " https://rseng.github.io/software/repository/github/Jacks0nJ/PyFPT",
+	"content": "Stochastic first-passage time (FPT) simulations using importance sampling."
 	},
-	"github/ghislainv/forestatrisk": {
-	"id": "github/ghislainv/forestatrisk",
-	"title": "github/ghislainv/forestatrisk",
-	"url": " https://rseng.github.io/software/repository/github/ghislainv/forestatrisk",
-	"content": ":package: :snake: Python package to model and forecast the risk of deforestation"
+	"github/ryanvarley/exodata": {
+	"id": "github/ryanvarley/exodata",
+	"title": "github/ryanvarley/exodata",
+	"url": " https://rseng.github.io/software/repository/github/ryanvarley/exodata",
+	"content": "Exoplanet catalogue interface and exploratory analysis tool"
 	},
-	"github/Blosc/c-blosc": {
-	"id": "github/Blosc/c-blosc",
-	"title": "github/Blosc/c-blosc",
-	"url": " https://rseng.github.io/software/repository/github/Blosc/c-blosc",
-	"content": "A blocking, shuffling and loss-less compression library that can be faster than `memcpy()`."
+	"github/GeodynamicWorldBuilder/WorldBuilder": {
+	"id": "github/GeodynamicWorldBuilder/WorldBuilder",
+	"title": "github/GeodynamicWorldBuilder/WorldBuilder",
+	"url": " https://rseng.github.io/software/repository/github/GeodynamicWorldBuilder/WorldBuilder",
+	"content": "World Builder: An initial conditions generator for geodynamic modeling"
 	},
-	"github/bioinfodlsu/phage-host-prediction": {
-	"id": "github/bioinfodlsu/phage-host-prediction",
-	"title": "github/bioinfodlsu/phage-host-prediction",
-	"url": " https://rseng.github.io/software/repository/github/bioinfodlsu/phage-host-prediction",
-	"content": "Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding proteins of phages. It presents improvements over using handcrafted sequence properties and eliminates the need to manually extract and select features from phage sequences"
+	"github/MelanieKahl/MechAnalyze": {
+	"id": "github/MelanieKahl/MechAnalyze",
+	"title": "github/MelanieKahl/MechAnalyze",
+	"url": " https://rseng.github.io/software/repository/github/MelanieKahl/MechAnalyze",
+	"content": "an algorithm for standardization and automation of unconfined compression test analysis"
 	},
-	"github/bioinfodlsu/PHIStruct": {
-	"id": "github/bioinfodlsu/PHIStruct",
-	"title": "github/bioinfodlsu/PHIStruct",
-	"url": " https://rseng.github.io/software/repository/github/bioinfodlsu/PHIStruct",
-	"content": "Published in Bioinformatics. Phage-host interaction prediction tool that incorporates protein structure information in representing receptor-binding proteins (RBPs). It improves performance especially for phages with RBPs that have low sequence similarity to those of known phages"
+	"github/feature-engine/feature_engine": {
+	"id": "github/feature-engine/feature_engine",
+	"title": "github/feature-engine/feature_engine",
+	"url": " https://rseng.github.io/software/repository/github/feature-engine/feature_engine",
+	"content": "Feature engineering package with sklearn like functionality"
 	},
-	"github/freesurfer/freesurfer": {
-	"id": "github/freesurfer/freesurfer",
-	"title": "github/freesurfer/freesurfer",
-	"url": " https://rseng.github.io/software/repository/github/freesurfer/freesurfer",
-	"content": "Neuroimaging analysis and visualization suite"
+	"github/aymgal/COOLEST": {
+	"id": "github/aymgal/COOLEST",
+	"title": "github/aymgal/COOLEST",
+	"url": " https://rseng.github.io/software/repository/github/aymgal/COOLEST",
+	"content": "Standard for strong gravitational lensing studies"
 	},
-	"github/danielhuson/malt": {
-	"id": "github/danielhuson/malt",
-	"title": "github/danielhuson/malt",
-	"url": " https://rseng.github.io/software/repository/github/danielhuson/malt",
-	"content": "MEGAN alignment tool"
+	"github/biocore-ntnu/pyranges": {
+	"id": "github/biocore-ntnu/pyranges",
+	"title": "github/biocore-ntnu/pyranges",
+	"url": " https://rseng.github.io/software/repository/github/biocore-ntnu/pyranges",
+	"content": "Performant Pythonic GenomicRanges"
 	},
-	"github/danielhuson/megan-ce": {
-	"id": "github/danielhuson/megan-ce",
-	"title": "github/danielhuson/megan-ce",
-	"url": " https://rseng.github.io/software/repository/github/danielhuson/megan-ce",
-	"content": "MEGAN Community Edition"
+	"github/biocore-ntnu/epic2": {
+	"id": "github/biocore-ntnu/epic2",
+	"title": "github/biocore-ntnu/epic2",
+	"url": " https://rseng.github.io/software/repository/github/biocore-ntnu/epic2",
+	"content": "Ultraperformant reimplementation of SICER"
 	},
-	"github/danielhuson/dendroscope3": {
-	"id": "github/danielhuson/dendroscope3",
-	"title": "github/danielhuson/dendroscope3",
-	"url": " https://rseng.github.io/software/repository/github/danielhuson/dendroscope3",
-	"content": "Dendroscope program for analyzing and visualizing rooted phylogenetic trees and networks"
+	"github/biocore-ntnu/ncls": {
+	"id": "github/biocore-ntnu/ncls",
+	"title": "github/biocore-ntnu/ncls",
+	"url": " https://rseng.github.io/software/repository/github/biocore-ntnu/ncls",
+	"content": "The Nested Containment List for Python. Basically a static interval-tree that is silly fast for both construction and lookups."
 	},
-	"github/danielhuson/jloda": {
-	"id": "github/danielhuson/jloda",
-	"title": "github/danielhuson/jloda",
-	"url": " https://rseng.github.io/software/repository/github/danielhuson/jloda",
-	"content": "JLODA - Java library of data structures and algorithms"
+	"github/siara-cc/Unishox2": {
+	"id": "github/siara-cc/Unishox2",
+	"title": "github/siara-cc/Unishox2",
+	"url": " https://rseng.github.io/software/repository/github/siara-cc/Unishox2",
+	"content": "Guaranteed compression for Unicode short strings"
 	},
-	"github/davidechicco/geneExpressionFromGEO": {
-	"id": "github/davidechicco/geneExpressionFromGEO",
-	"title": "github/davidechicco/geneExpressionFromGEO",
-	"url": " https://rseng.github.io/software/repository/github/davidechicco/geneExpressionFromGEO",
-	"content": "geneExpressionFromGEO"
+	"github/brettc/partitionfinder": {
+	"id": "github/brettc/partitionfinder",
+	"title": "github/brettc/partitionfinder",
+	"url": " https://rseng.github.io/software/repository/github/brettc/partitionfinder",
+	"content": "PartitionFinder discovers optimal partitioning schemes for DNA sequences."
 	},
-	"github/ComputationalRegulatoryGenomicsICL/TFBS": {
-	"id": "github/ComputationalRegulatoryGenomicsICL/TFBS",
-	"title": "github/ComputationalRegulatoryGenomicsICL/TFBS",
-	"url": " https://rseng.github.io/software/repository/github/ComputationalRegulatoryGenomicsICL/TFBS",
-	"content": "TFBS perl module"
+	"github/jpierel14/sntd": {
+	"id": "github/jpierel14/sntd",
+	"title": "github/jpierel14/sntd",
+	"url": " https://rseng.github.io/software/repository/github/jpierel14/sntd",
+	"content": "SNTD is a Python package dedicated to measuring time delays for strongly lensed and multiply-imaged SN. The package can simulate lensed SN, fit for each SN time delay, and propagate the results all the way through to cosmological constraints."
 	},
-	"github/mikecokina/elisa": {
-	"id": "github/mikecokina/elisa",
-	"title": "github/mikecokina/elisa",
-	"url": " https://rseng.github.io/software/repository/github/mikecokina/elisa",
+	"github/jpierel14/snsed": {
+	"id": "github/jpierel14/snsed",
+	"title": "github/jpierel14/snsed",
+	"url": " https://rseng.github.io/software/repository/github/jpierel14/snsed",
 	"content": "None"
 	},
-	"github/akikuno/cstag": {
-	"id": "github/akikuno/cstag",
-	"title": "github/akikuno/cstag",
-	"url": " https://rseng.github.io/software/repository/github/akikuno/cstag",
-	"content": "Python module to manipulate and visualize minimap2&#39;s cs tag"
+	"github/tool-bin/ukbcc": {
+	"id": "github/tool-bin/ukbcc",
+	"title": "github/tool-bin/ukbcc",
+	"url": " https://rseng.github.io/software/repository/github/tool-bin/ukbcc",
+	"content": "UKBB Cohort Curator. "
 	},
-	"github/arcaldwell49/SimplyAgree": {
-	"id": "github/arcaldwell49/SimplyAgree",
-	"title": "github/arcaldwell49/SimplyAgree",
-	"url": " https://rseng.github.io/software/repository/github/arcaldwell49/SimplyAgree",
-	"content": "A simple R package for calculating absolute agreement and estimating required sample sizes for studies of absolute agreement"
+	"github/brian-lau/MatlabAUC": {
+	"id": "github/brian-lau/MatlabAUC",
+	"title": "github/brian-lau/MatlabAUC",
+	"url": " https://rseng.github.io/software/repository/github/brian-lau/MatlabAUC",
+	"content": "Matlab code for the area under the receiver operating curve (AUC) and confidence intervals"
 	},
-	"github/vdemichev/DiaNN": {
-	"id": "github/vdemichev/DiaNN",
-	"title": "github/vdemichev/DiaNN",
-	"url": " https://rseng.github.io/software/repository/github/vdemichev/DiaNN",
-	"content": "DIA-NN - a universal automated software suite for DIA proteomics data analysis. "
+	"github/dshawul/NebulaSEM": {
+	"id": "github/dshawul/NebulaSEM",
+	"title": "github/dshawul/NebulaSEM",
+	"url": " https://rseng.github.io/software/repository/github/dshawul/NebulaSEM",
+	"content": "Finite Volume (FV) and high-order Discontinuous Galerkin (DG) solver"
 	},
-	"github/ageorgakakis/StructureFunction": {
-	"id": "github/ageorgakakis/StructureFunction",
-	"title": "github/ageorgakakis/StructureFunction",
-	"url": " https://rseng.github.io/software/repository/github/ageorgakakis/StructureFunction",
-	"content": "None"
+	"github/tbep-tech/tbeptools": {
+	"id": "github/tbep-tech/tbeptools",
+	"title": "github/tbep-tech/tbeptools",
+	"url": " https://rseng.github.io/software/repository/github/tbep-tech/tbeptools",
+	"content": "R package for Tampa Bay Estuary Program functions"
 	},
-	"github/tomasplsek/CADET": {
-	"id": "github/tomasplsek/CADET",
-	"title": "github/tomasplsek/CADET",
-	"url": " https://rseng.github.io/software/repository/github/tomasplsek/CADET",
-	"content": "Machine learning pipeline trained for finding and size-estimating X-ray cavities from noisy Chandra images of early-type galaxies."
+	"github/Munroe-Meyer-Institute-VR-Laboratory/Biosensor-Framework": {
+	"id": "github/Munroe-Meyer-Institute-VR-Laboratory/Biosensor-Framework",
+	"title": "github/Munroe-Meyer-Institute-VR-Laboratory/Biosensor-Framework",
+	"url": " https://rseng.github.io/software/repository/github/Munroe-Meyer-Institute-VR-Laboratory/Biosensor-Framework",
+	"content": "C# library that handles the full process of gathering biometric data from a body-worn sensor, transforming it into handcrafted feature vectors, and delivering an inferencing result in thirty-five lines of code. "
 	},
-	"github/ImproPhoto/pymicmac": {
-	"id": "github/ImproPhoto/pymicmac",
-	"title": "github/ImproPhoto/pymicmac",
-	"url": " https://rseng.github.io/software/repository/github/ImproPhoto/pymicmac",
-	"content": "Python tools for the MicMac FOSS photogrammetric &#34;suite&#34;"
+	"github/carlodev/SyntheticEddyMethod.jl": {
+	"id": "github/carlodev/SyntheticEddyMethod.jl",
+	"title": "github/carlodev/SyntheticEddyMethod.jl",
+	"url": " https://rseng.github.io/software/repository/github/carlodev/SyntheticEddyMethod.jl",
+	"content": "None"
 	},
-	"github/bioAI-Oslo/Spikeometric": {
-	"id": "github/bioAI-Oslo/Spikeometric",
-	"title": "github/bioAI-Oslo/Spikeometric",
-	"url": " https://rseng.github.io/software/repository/github/bioAI-Oslo/Spikeometric",
-	"content": "Spiking Neural Network Simulator based on Generalized Linear Models"
+	"github/potassco/clingo": {
+	"id": "github/potassco/clingo",
+	"title": "github/potassco/clingo",
+	"url": " https://rseng.github.io/software/repository/github/potassco/clingo",
+	"content": "🤔 A grounder and solver for logic programs."
 	},
-	"github/ahcm/ffindex": {
-	"id": "github/ahcm/ffindex",
-	"title": "github/ahcm/ffindex",
-	"url": " https://rseng.github.io/software/repository/github/ahcm/ffindex",
-	"content": "simple index/database for huge amounts of small files"
+	"github/inab/trimal": {
+	"id": "github/inab/trimal",
+	"title": "github/inab/trimal",
+	"url": " https://rseng.github.io/software/repository/github/inab/trimal",
+	"content": "A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0"
 	},
-	"github/fannyhb/fargene": {
-	"id": "github/fannyhb/fargene",
-	"title": "github/fannyhb/fargene",
-	"url": " https://rseng.github.io/software/repository/github/fannyhb/fargene",
-	"content": "None"
+	"github/mortonne/psifr": {
+	"id": "github/mortonne/psifr",
+	"title": "github/mortonne/psifr",
+	"url": " https://rseng.github.io/software/repository/github/mortonne/psifr",
+	"content": "Psifr: Analysis and visualization of free recall data"
 	},
-	"github/mrvollger/fibertools-rs": {
-	"id": "github/mrvollger/fibertools-rs",
-	"title": "github/mrvollger/fibertools-rs",
-	"url": " https://rseng.github.io/software/repository/github/mrvollger/fibertools-rs",
-	"content": "Tools for fiberseq data written in rust. "
+	"github/OnroerendErfgoed/atramhasis": {
+	"id": "github/OnroerendErfgoed/atramhasis",
+	"title": "github/OnroerendErfgoed/atramhasis",
+	"url": " https://rseng.github.io/software/repository/github/OnroerendErfgoed/atramhasis",
+	"content": "An online SKOS editor"
 	},
-	"github/mrvollger/rustybam": {
-	"id": "github/mrvollger/rustybam",
-	"title": "github/mrvollger/rustybam",
-	"url": " https://rseng.github.io/software/repository/github/mrvollger/rustybam",
-	"content": "bioinformatics toolkit in rust"
+	"github/rust-bio/rust-bio-tools": {
+	"id": "github/rust-bio/rust-bio-tools",
+	"title": "github/rust-bio/rust-bio-tools",
+	"url": " https://rseng.github.io/software/repository/github/rust-bio/rust-bio-tools",
+	"content": "A set of command line utilities based on Rust-Bio."
 	},
-	"github/EcoJulia/SimpleSDMLayers.jl": {
-	"id": "github/EcoJulia/SimpleSDMLayers.jl",
-	"title": "github/EcoJulia/SimpleSDMLayers.jl",
-	"url": " https://rseng.github.io/software/repository/github/EcoJulia/SimpleSDMLayers.jl",
-	"content": "Simple layers for species distribution modeling and bioclimatic data"
+	"github/WBK-Robotics/pybullet_industrial": {
+	"id": "github/WBK-Robotics/pybullet_industrial",
+	"title": "github/WBK-Robotics/pybullet_industrial",
+	"url": " https://rseng.github.io/software/repository/github/WBK-Robotics/pybullet_industrial",
+	"content": "A simulation package extending pybullet for industrial robot applications"
 	},
-	"github/EcoJulia/Microbiome.jl": {
-	"id": "github/EcoJulia/Microbiome.jl",
-	"title": "github/EcoJulia/Microbiome.jl",
-	"url": " https://rseng.github.io/software/repository/github/EcoJulia/Microbiome.jl",
-	"content": "For analysis of microbiome and microbial community data"
+	"github/dpthorngren/PlanetSlicer": {
+	"id": "github/dpthorngren/PlanetSlicer",
+	"title": "github/dpthorngren/PlanetSlicer",
+	"url": " https://rseng.github.io/software/repository/github/dpthorngren/PlanetSlicer",
+	"content": "A simple implementation of the orange-slice algorithm for fitting brightness maps to phase curves (from Cowan and Agol 2008) extended to also handle reflected light (Mayorga et al. 2020)."
 	},
-	"github/EcoJulia/EcologicalNetworks.jl": {
-	"id": "github/EcoJulia/EcologicalNetworks.jl",
-	"title": "github/EcoJulia/EcologicalNetworks.jl",
-	"url": " https://rseng.github.io/software/repository/github/EcoJulia/EcologicalNetworks.jl",
-	"content": "Everything you&#39;ve never dreamed about measuring on ecological networks."
+	"github/agurvich/FIRE_studio": {
+	"id": "github/agurvich/FIRE_studio",
+	"title": "github/agurvich/FIRE_studio",
+	"url": " https://rseng.github.io/software/repository/github/agurvich/FIRE_studio",
+	"content": "Movie Making Utilities for FIRE simulations"
 	},
-	"github/ThibaultFillion/strengths": {
-	"id": "github/ThibaultFillion/strengths",
-	"title": "github/ThibaultFillion/strengths",
-	"url": " https://rseng.github.io/software/repository/github/ThibaultFillion/strengths",
-	"content": "inhomogeneous reaction diffusion python package"
+	"github/easystats/performance": {
+	"id": "github/easystats/performance",
+	"title": "github/easystats/performance",
+	"url": " https://rseng.github.io/software/repository/github/easystats/performance",
+	"content": ":muscle: Models&#39; quality and performance metrics (R2, ICC, LOO, AIC, BF, ...)"
 	},
-	"github/keatonb/TESS_PRF": {
-	"id": "github/keatonb/TESS_PRF",
-	"title": "github/keatonb/TESS_PRF",
-	"url": " https://rseng.github.io/software/repository/github/keatonb/TESS_PRF",
-	"content": "Tools to display the TESS pixel response function (PRF) at any location on the detector"
+	"github/easystats/correlation": {
+	"id": "github/easystats/correlation",
+	"title": "github/easystats/correlation",
+	"url": " https://rseng.github.io/software/repository/github/easystats/correlation",
+	"content": ":link: Methods for Correlation Analysis"
+	},
+	"github/easystats/parameters": {
+	"id": "github/easystats/parameters",
+	"title": "github/easystats/parameters",
+	"url": " https://rseng.github.io/software/repository/github/easystats/parameters",
+	"content": ":bar_chart: Computation and processing of models&#39; parameters"
 	},
-	"github/keatonb/Pyriod": {
-	"id": "github/keatonb/Pyriod",
-	"title": "github/keatonb/Pyriod",
-	"url": " https://rseng.github.io/software/repository/github/keatonb/Pyriod",
-	"content": "Python implementation of basic period detection and fitting routines for astronomical time series."
+	"github/easystats/effectsize": {
+	"id": "github/easystats/effectsize",
+	"title": "github/easystats/effectsize",
+	"url": " https://rseng.github.io/software/repository/github/easystats/effectsize",
+	"content": ":dragon: Compute and work with indices of effect size and standardized parameters"
 	},
-	"github/laurazara/IgIDivA": {
-	"id": "github/laurazara/IgIDivA",
-	"title": "github/laurazara/IgIDivA",
-	"url": " https://rseng.github.io/software/repository/github/laurazara/IgIDivA",
-	"content": "None"
+	"github/mentatpsi/OSGenome": {
+	"id": "github/mentatpsi/OSGenome",
+	"title": "github/mentatpsi/OSGenome",
+	"url": " https://rseng.github.io/software/repository/github/mentatpsi/OSGenome",
+	"content": "An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies"
 	},
-	"github/nh13/DWGSIM": {
-	"id": "github/nh13/DWGSIM",
-	"title": "github/nh13/DWGSIM",
-	"url": " https://rseng.github.io/software/repository/github/nh13/DWGSIM",
-	"content": "a whole genome simulator for next-generation sequencing based off of wgsim found in SAMtools, which was written by Heng Li, and forked from DNAA. It was modified to handle ABI SOLiD and Ion Torrent data, as well as various assumptions about aligners and positions of indels. Many new features have been subsequently added."
+	"github/marziarivi/RadioLensfit2": {
+	"id": "github/marziarivi/RadioLensfit2",
+	"title": "github/marziarivi/RadioLensfit2",
+	"url": " https://rseng.github.io/software/repository/github/marziarivi/RadioLensfit2",
+	"content": "Radio Weak Lensing shear measurement in the Visibility Domain "
 	},
-	"github/cpinte/mcfost": {
-	"id": "github/cpinte/mcfost",
-	"title": "github/cpinte/mcfost",
-	"url": " https://rseng.github.io/software/repository/github/cpinte/mcfost",
-	"content": "MCFOST radiative transfer code"
+	"github/slzarate/parliament2": {
+	"id": "github/slzarate/parliament2",
+	"title": "github/slzarate/parliament2",
+	"url": " https://rseng.github.io/software/repository/github/slzarate/parliament2",
+	"content": "Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data"
 	},
-	"github/cpinte/pymcfost": {
-	"id": "github/cpinte/pymcfost",
-	"title": "github/cpinte/pymcfost",
-	"url": " https://rseng.github.io/software/repository/github/cpinte/pymcfost",
-	"content": "python interface to the 3D radiative transfer code mcfost"
+	"github/amanchokshi/EMBERS": {
+	"id": "github/amanchokshi/EMBERS",
+	"title": "github/amanchokshi/EMBERS",
+	"url": " https://rseng.github.io/software/repository/github/amanchokshi/EMBERS",
+	"content": "Experimental Measurement of BEam Responses with Satellites"
 	},
-	"github/cpinte/casa_cube": {
-	"id": "github/cpinte/casa_cube",
-	"title": "github/cpinte/casa_cube",
-	"url": " https://rseng.github.io/software/repository/github/cpinte/casa_cube",
-	"content": "python tool to display and analysis astronomical data cubes"
+	"github/artic-network/readucks": {
+	"id": "github/artic-network/readucks",
+	"title": "github/artic-network/readucks",
+	"url": " https://rseng.github.io/software/repository/github/artic-network/readucks",
+	"content": "Nanopore read de-multiplexer"
 	},
-	"github/feature-engine/feature_engine": {
-	"id": "github/feature-engine/feature_engine",
-	"title": "github/feature-engine/feature_engine",
-	"url": " https://rseng.github.io/software/repository/github/feature-engine/feature_engine",
-	"content": "Feature engineering package with sklearn like functionality"
+	"github/artic-network/fieldbioinformatics": {
+	"id": "github/artic-network/fieldbioinformatics",
+	"title": "github/artic-network/fieldbioinformatics",
+	"url": " https://rseng.github.io/software/repository/github/artic-network/fieldbioinformatics",
+	"content": "The ARTIC field bioinformatics pipeline"
 	},
-	"github/pymedphys/pymedphys": {
-	"id": "github/pymedphys/pymedphys",
-	"title": "github/pymedphys/pymedphys",
-	"url": " https://rseng.github.io/software/repository/github/pymedphys/pymedphys",
-	"content": "A community effort to develop an open standard library for Medical Physics in Python. Building quality transparent software together via peer review and open source distribution. Open code is better science."
+	"github/MesserLab/SLiM": {
+	"id": "github/MesserLab/SLiM",
+	"title": "github/MesserLab/SLiM",
+	"url": " https://rseng.github.io/software/repository/github/MesserLab/SLiM",
+	"content": "SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology.  It is highly flexible, with a built-in scripting language, and has a cross-platform graphical modeling environment called SLiMgui."
 	},
-	"github/MrOlm/drep": {
-	"id": "github/MrOlm/drep",
-	"title": "github/MrOlm/drep",
-	"url": " https://rseng.github.io/software/repository/github/MrOlm/drep",
-	"content": "a python program for rapidly comparing large numbers of genomes, dRep can also &#34;de-replicate&#34; a genome set by identifying groups of highly similar genomes and choosing the best representative genome for each genome set."
+	"github/mwanakijiji/rrlfe": {
+	"id": "github/mwanakijiji/rrlfe",
+	"title": "github/mwanakijiji/rrlfe",
+	"url": " https://rseng.github.io/software/repository/github/mwanakijiji/rrlfe",
+	"content": "None"
 	},
-	"github/gperezs/StarcNet": {
-	"id": "github/gperezs/StarcNet",
-	"title": "github/gperezs/StarcNet",
-	"url": " https://rseng.github.io/software/repository/github/gperezs/StarcNet",
-	"content": "Machine learning for star cluster classification"
+	"github/mfruzan/HaploMaker": {
+	"id": "github/mfruzan/HaploMaker",
+	"title": "github/mfruzan/HaploMaker",
+	"url": " https://rseng.github.io/software/repository/github/mfruzan/HaploMaker",
+	"content": "None"
 	},
-	"github/achael/eht-imaging": {
-	"id": "github/achael/eht-imaging",
-	"title": "github/achael/eht-imaging",
-	"url": " https://rseng.github.io/software/repository/github/achael/eht-imaging",
-	"content": "Imaging, analysis, and simulation software for radio interferometry"
+	"github/biod/sambamba": {
+	"id": "github/biod/sambamba",
+	"title": "github/biod/sambamba",
+	"url": " https://rseng.github.io/software/repository/github/biod/sambamba",
+	"content": "Tools for working with SAM/BAM data"
 	},
-	"github/SHTOOLS/SHTOOLS": {
-	"id": "github/SHTOOLS/SHTOOLS",
-	"title": "github/SHTOOLS/SHTOOLS",
-	"url": " https://rseng.github.io/software/repository/github/SHTOOLS/SHTOOLS",
-	"content": "SHTOOLS - Spherical Harmonic Tools"
+	"github/RadioAstronomySoftwareGroup/pyuvdata": {
+	"id": "github/RadioAstronomySoftwareGroup/pyuvdata",
+	"title": "github/RadioAstronomySoftwareGroup/pyuvdata",
+	"url": " https://rseng.github.io/software/repository/github/RadioAstronomySoftwareGroup/pyuvdata",
+	"content": "A pythonic interface for radio astronomy interferometry data (uvfits, miriad, others)"
 	},
-	"github/Aminsinichi/wearable-hrv": {
-	"id": "github/Aminsinichi/wearable-hrv",
-	"title": "github/Aminsinichi/wearable-hrv",
-	"url": " https://rseng.github.io/software/repository/github/Aminsinichi/wearable-hrv",
-	"content": "A Python package for the validation of heart rate and heart rate variability in wearables"
+	"github/RadioAstronomySoftwareGroup/pyradiosky": {
+	"id": "github/RadioAstronomySoftwareGroup/pyradiosky",
+	"title": "github/RadioAstronomySoftwareGroup/pyradiosky",
+	"url": " https://rseng.github.io/software/repository/github/RadioAstronomySoftwareGroup/pyradiosky",
+	"content": "Python objects and interfaces for representing diffuse, extended and compact astrophysical radio sources"
 	},
-	"github/kavonrtep/dante": {
-	"id": "github/kavonrtep/dante",
-	"title": "github/kavonrtep/dante",
-	"url": " https://rseng.github.io/software/repository/github/kavonrtep/dante",
-	"content": "Domain based annotation of transposable elements "
+	"github/firefly-cpp/NiaARM": {
+	"id": "github/firefly-cpp/NiaARM",
+	"title": "github/firefly-cpp/NiaARM",
+	"url": " https://rseng.github.io/software/repository/github/firefly-cpp/NiaARM",
+	"content": "A minimalistic framework for Numerical Association Rule Mining"
 	},
-	"github/gbernstein/pixmappy": {
-	"id": "github/gbernstein/pixmappy",
-	"title": "github/gbernstein/pixmappy",
-	"url": " https://rseng.github.io/software/repository/github/gbernstein/pixmappy",
-	"content": "Python interface to gbdes pixel map (astrometry) solutions"
+	"github/domschrei/mallob": {
+	"id": "github/domschrei/mallob",
+	"title": "github/domschrei/mallob",
+	"url": " https://rseng.github.io/software/repository/github/domschrei/mallob",
+	"content": "Malleable Load Balancer. Massively Parallel Logic Backend. Award-winning SAT solving for the cloud."
 	},
-	"github/gbernstein/gbdes": {
-	"id": "github/gbernstein/gbdes",
-	"title": "github/gbernstein/gbdes",
-	"url": " https://rseng.github.io/software/repository/github/gbernstein/gbdes",
-	"content": "Gary&#39;s DES instrumental signature removal / fitting programs"
+	"github/jcibanezm/DustCharge": {
+	"id": "github/jcibanezm/DustCharge",
+	"title": "github/jcibanezm/DustCharge",
+	"url": " https://rseng.github.io/software/repository/github/jcibanezm/DustCharge",
+	"content": "Calculate the equilibrium charge distribution for a dust grain of a given size and composition, depending on the local interstellar medium conditions, such as: density, temperature, ionization fraction, local radiation field strength and cosmic ray ionization fraction."
 	},
-	"github/RafiKueng/SpaghettiLens": {
-	"id": "github/RafiKueng/SpaghettiLens",
-	"title": "github/RafiKueng/SpaghettiLens",
-	"url": " https://rseng.github.io/software/repository/github/RafiKueng/SpaghettiLens",
-	"content": "Webbased Gravitational Lens Modelling Tool (client and server side)"
+	"github/danielkoll/tidally-locked-coordinates": {
+	"id": "github/danielkoll/tidally-locked-coordinates",
+	"title": "github/danielkoll/tidally-locked-coordinates",
+	"url": " https://rseng.github.io/software/repository/github/danielkoll/tidally-locked-coordinates",
+	"content": "Scripts for transforming GCM output into a tidally locked coordinate system."
 	},
-	"github/remi-adam/minot": {
-	"id": "github/remi-adam/minot",
-	"title": "github/remi-adam/minot",
-	"url": " https://rseng.github.io/software/repository/github/remi-adam/minot",
-	"content": "minot: Modeling of the ICM (Non-)thermal content and Observables prediction Tools"
+	"github/danielkoll/PyRADS": {
+	"id": "github/danielkoll/PyRADS",
+	"title": "github/danielkoll/PyRADS",
+	"url": " https://rseng.github.io/software/repository/github/danielkoll/PyRADS",
+	"content": "A line-by-line longwave radiation code for planetary atmospheres."
 	},
-	"github/jeertmans/DiffeRT2d": {
-	"id": "github/jeertmans/DiffeRT2d",
-	"title": "github/jeertmans/DiffeRT2d",
-	"url": " https://rseng.github.io/software/repository/github/jeertmans/DiffeRT2d",
-	"content": "2D Toolbox for Differentiable Ray Tracing"
+	"github/korcsmarosgroup/TFlink": {
+	"id": "github/korcsmarosgroup/TFlink",
+	"title": "github/korcsmarosgroup/TFlink",
+	"url": " https://rseng.github.io/software/repository/github/korcsmarosgroup/TFlink",
+	"content": "Repository for the TFlink.net website."
 	},
-	"github/itpplasma/GORILLA": {
-	"id": "github/itpplasma/GORILLA",
-	"title": "github/itpplasma/GORILLA",
-	"url": " https://rseng.github.io/software/repository/github/itpplasma/GORILLA",
-	"content": "GORILLA: Guiding-center ORbit Integration with Local Linearization Approach"
+	"github/korcsmarosgroup/CytokineLink": {
+	"id": "github/korcsmarosgroup/CytokineLink",
+	"title": "github/korcsmarosgroup/CytokineLink",
+	"url": " https://rseng.github.io/software/repository/github/korcsmarosgroup/CytokineLink",
+	"content": "CytokineLink: a map of cytokine communication for inflammatory and infectious diseases"
 	},
-	"github/hildebra/LCA": {
-	"id": "github/hildebra/LCA",
-	"title": "github/hildebra/LCA",
-	"url": " https://rseng.github.io/software/repository/github/hildebra/LCA",
-	"content": "least common ancestor evaluation given tax database and "
+	"github/qtltools/qtltools": {
+	"id": "github/qtltools/qtltools",
+	"title": "github/qtltools/qtltools",
+	"url": " https://rseng.github.io/software/repository/github/qtltools/qtltools",
+	"content": "A complete tool set for molecular QTL discovery and analysis"
 	},
-	"github/hildebra/sdm": {
-	"id": "github/hildebra/sdm",
-	"title": "github/hildebra/sdm",
-	"url": " https://rseng.github.io/software/repository/github/hildebra/sdm",
-	"content": "Fast tool for sequence related tasks"
+	"github/lberaldoesilva/naif": {
+	"id": "github/lberaldoesilva/naif",
+	"title": "github/lberaldoesilva/naif",
+	"url": " https://rseng.github.io/software/repository/github/lberaldoesilva/naif",
+	"content": "pure-python package for numerical analysis of frequencies of numerically integrated orbits"
 	},
-	"github/aringlis/afino_release_version": {
-	"id": "github/aringlis/afino_release_version",
-	"title": "github/aringlis/afino_release_version",
-	"url": " https://rseng.github.io/software/repository/github/aringlis/afino_release_version",
+	"github/aliojjati/MGCAMB": {
+	"id": "github/aliojjati/MGCAMB",
+	"title": "github/aliojjati/MGCAMB",
+	"url": " https://rseng.github.io/software/repository/github/aliojjati/MGCAMB",
+	"content": "Repo for MGCAMB"
+	},
+	"github/cespinosa/pyHIIexplorerV2": {
+	"id": "github/cespinosa/pyHIIexplorerV2",
+	"title": "github/cespinosa/pyHIIexplorerV2",
+	"url": " https://rseng.github.io/software/repository/github/cespinosa/pyHIIexplorerV2",
 	"content": "None"
 	},
-	"github/nvalimak/fsm-lite": {
-	"id": "github/nvalimak/fsm-lite",
-	"title": "github/nvalimak/fsm-lite",
-	"url": " https://rseng.github.io/software/repository/github/nvalimak/fsm-lite",
-	"content": "frequency-based string mining (lite)"
+	"github/csinva/imodels": {
+	"id": "github/csinva/imodels",
+	"title": "github/csinva/imodels",
+	"url": " https://rseng.github.io/software/repository/github/csinva/imodels",
+	"content": "Interpretable ML package 🔍 for concise, transparent, and accurate predictive modeling (sklearn-compatible)."
 	},
-	"github/deepskies/deeplenstronomy": {
-	"id": "github/deepskies/deeplenstronomy",
-	"title": "github/deepskies/deeplenstronomy",
-	"url": " https://rseng.github.io/software/repository/github/deepskies/deeplenstronomy",
-	"content": "A pipeline for versatile strong lens sample simulations"
+	"github/discsim/frank": {
+	"id": "github/discsim/frank",
+	"title": "github/discsim/frank",
+	"url": " https://rseng.github.io/software/repository/github/discsim/frank",
+	"content": "1D radial brightness profile reconstruction for interferometric sources"
 	},
-	"github/wcoulton/CompressedFisher": {
-	"id": "github/wcoulton/CompressedFisher",
-	"title": "github/wcoulton/CompressedFisher",
-	"url": " https://rseng.github.io/software/repository/github/wcoulton/CompressedFisher",
-	"content": "None"
+	"github/oruhnau/when2heat": {
+	"id": "github/oruhnau/when2heat",
+	"title": "github/oruhnau/when2heat",
+	"url": " https://rseng.github.io/software/repository/github/oruhnau/when2heat",
+	"content": "Heating Profiles"
 	},
-	"github/mentatpsi/OSGenome": {
-	"id": "github/mentatpsi/OSGenome",
-	"title": "github/mentatpsi/OSGenome",
-	"url": " https://rseng.github.io/software/repository/github/mentatpsi/OSGenome",
-	"content": "An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies"
+	"github/montilab/nf-gwas-pipeline": {
+	"id": "github/montilab/nf-gwas-pipeline",
+	"title": "github/montilab/nf-gwas-pipeline",
+	"url": " https://rseng.github.io/software/repository/github/montilab/nf-gwas-pipeline",
+	"content": "A Nextflow Genome-Wide Association Study (GWAS) Pipeline"
 	},
-	"github/valeriabonapersona/repair": {
-	"id": "github/valeriabonapersona/repair",
-	"title": "github/valeriabonapersona/repair",
-	"url": " https://rseng.github.io/software/repository/github/valeriabonapersona/repair",
-	"content": "Reduction from Prior Animal Informed Research"
+	"github/cbib/decontaminator": {
+	"id": "github/cbib/decontaminator",
+	"title": "github/cbib/decontaminator",
+	"url": " https://rseng.github.io/software/repository/github/cbib/decontaminator",
+	"content": "deep learning contamination filtering tool"
 	},
-	"github/918particle/AskaryanModule": {
-	"id": "github/918particle/AskaryanModule",
-	"title": "github/918particle/AskaryanModule",
-	"url": " https://rseng.github.io/software/repository/github/918particle/AskaryanModule",
-	"content": "None"
+	"github/STAR-Fusion/STAR-Fusion": {
+	"id": "github/STAR-Fusion/STAR-Fusion",
+	"title": "github/STAR-Fusion/STAR-Fusion",
+	"url": " https://rseng.github.io/software/repository/github/STAR-Fusion/STAR-Fusion",
+	"content": "STAR-Fusion codebase"
 	},
-	"github/pangenome/smoothxg": {
-	"id": "github/pangenome/smoothxg",
-	"title": "github/pangenome/smoothxg",
-	"url": " https://rseng.github.io/software/repository/github/pangenome/smoothxg",
-	"content": "linearize and simplify variation graphs using blocked partial order alignment"
+	"github/jakobherpich/pyICs": {
+	"id": "github/jakobherpich/pyICs",
+	"title": "github/jakobherpich/pyICs",
+	"url": " https://rseng.github.io/software/repository/github/jakobherpich/pyICs",
+	"content": "An initial conditions creator for isolated galaxy formation simulations."
 	},
-	"github/herrsalmi/FConverter": {
-	"id": "github/herrsalmi/FConverter",
-	"title": "github/herrsalmi/FConverter",
-	"url": " https://rseng.github.io/software/repository/github/herrsalmi/FConverter",
-	"content": "File format converter for FImpute2"
+	"github/fccoelho/epigrass": {
+	"id": "github/fccoelho/epigrass",
+	"title": "github/fccoelho/epigrass",
+	"url": " https://rseng.github.io/software/repository/github/fccoelho/epigrass",
+	"content": "Epidemiological Geo-referenced Analysis and Simulation system"
 	},
-	"github/snad-space/zwad": {
-	"id": "github/snad-space/zwad",
-	"title": "github/snad-space/zwad",
-	"url": " https://rseng.github.io/software/repository/github/snad-space/zwad",
-	"content": "ZTF anomaly detection"
+	"github/fccoelho/epimodels": {
+	"id": "github/fccoelho/epimodels",
+	"title": "github/fccoelho/epimodels",
+	"url": " https://rseng.github.io/software/repository/github/fccoelho/epimodels",
+	"content": "Library for simulation with mathematical epidemiology models"
 	},
-	"github/snad-space/coniferest": {
-	"id": "github/snad-space/coniferest",
-	"title": "github/snad-space/coniferest",
-	"url": " https://rseng.github.io/software/repository/github/snad-space/coniferest",
-	"content": "None"
+	"github/MNGuenther/allesfitter": {
+	"id": "github/MNGuenther/allesfitter",
+	"title": "github/MNGuenther/allesfitter",
+	"url": " https://rseng.github.io/software/repository/github/MNGuenther/allesfitter",
+	"content": "allesfitter is a convenient wrapper around the packages ellc (light curve and RV models), dynesty (static and dynamic nested sampling) emcee (Markov Chain Monte Carlo sampling) and celerite (Gaussian Process models)."
 	},
-	"github/snad-space/ztf-viewer": {
-	"id": "github/snad-space/ztf-viewer",
-	"title": "github/snad-space/ztf-viewer",
-	"url": " https://rseng.github.io/software/repository/github/snad-space/ztf-viewer",
-	"content": "ZTF data releases light curve viewer"
+	"github/scikit-learn/scikit-learn": {
+	"id": "github/scikit-learn/scikit-learn",
+	"title": "github/scikit-learn/scikit-learn",
+	"url": " https://rseng.github.io/software/repository/github/scikit-learn/scikit-learn",
+	"content": "scikit-learn: machine learning in Python"
 	},
-	"github/ugovaretto/molekel": {
-	"id": "github/ugovaretto/molekel",
-	"title": "github/ugovaretto/molekel",
-	"url": " https://rseng.github.io/software/repository/github/ugovaretto/molekel",
-	"content": "molekel"
+	"github/mkunimoto/LEO-vetter": {
+	"id": "github/mkunimoto/LEO-vetter",
+	"title": "github/mkunimoto/LEO-vetter",
+	"url": " https://rseng.github.io/software/repository/github/mkunimoto/LEO-vetter",
+	"content": "Automated vetting for TESS planet candidates"
 	},
-	"github/petigura/terra": {
-	"id": "github/petigura/terra",
-	"title": "github/petigura/terra",
-	"url": " https://rseng.github.io/software/repository/github/petigura/terra",
-	"content": "Transit Detection Code"
+	"github/vipinagrawal25/MeMC": {
+	"id": "github/vipinagrawal25/MeMC",
+	"title": "github/vipinagrawal25/MeMC",
+	"url": " https://rseng.github.io/software/repository/github/vipinagrawal25/MeMC",
+	"content": "The software mainly has three sections:"
 	},
-	"github/davidpagnon/Sports2D": {
-	"id": "github/davidpagnon/Sports2D",
-	"title": "github/davidpagnon/Sports2D",
-	"url": " https://rseng.github.io/software/repository/github/davidpagnon/Sports2D",
-	"content": "Compute 2D human pose and angles from a video or a webcam. "
+	"github/alexfields/ORF-RATER": {
+	"id": "github/alexfields/ORF-RATER",
+	"title": "github/alexfields/ORF-RATER",
+	"url": " https://rseng.github.io/software/repository/github/alexfields/ORF-RATER",
+	"content": "Regression-based annotation of protein-coding sequences from ribosome profiling data"
 	},
-	"github/tidymodels/infer": {
-	"id": "github/tidymodels/infer",
-	"title": "github/tidymodels/infer",
-	"url": " https://rseng.github.io/software/repository/github/tidymodels/infer",
-	"content": "An R package for tidyverse-friendly statistical inference"
+	"github/RozanskiT/suppnet": {
+	"id": "github/RozanskiT/suppnet",
+	"title": "github/RozanskiT/suppnet",
+	"url": " https://rseng.github.io/software/repository/github/RozanskiT/suppnet",
+	"content": "SUPPNet: Neural network for stellar spectrum normalisation"
 	},
-	"github/tidymodels/stacks": {
-	"id": "github/tidymodels/stacks",
-	"title": "github/tidymodels/stacks",
-	"url": " https://rseng.github.io/software/repository/github/tidymodels/stacks",
-	"content": "An R package for tidy stacked ensemble modeling"
+	"github/dfki-ric/movement_primitives": {
+	"id": "github/dfki-ric/movement_primitives",
+	"title": "github/dfki-ric/movement_primitives",
+	"url": " https://rseng.github.io/software/repository/github/dfki-ric/movement_primitives",
+	"content": "Dynamical movement primitives (DMPs), probabilistic movement primitives (ProMPs), and spatially coupled bimanual DMPs for imitation learning."
 	},
-	"github/klho/FLAM": {
-	"id": "github/klho/FLAM",
-	"title": "github/klho/FLAM",
-	"url": " https://rseng.github.io/software/repository/github/klho/FLAM",
-	"content": "Fast linear algebra in MATLAB"
+	"github/jhkorhonen/MOODS": {
+	"id": "github/jhkorhonen/MOODS",
+	"title": "github/jhkorhonen/MOODS",
+	"url": " https://rseng.github.io/software/repository/github/jhkorhonen/MOODS",
+	"content": "MOODS: Motif Occurrence Detection Suite"
 	},
-	"github/madysonb/EVA": {
-	"id": "github/madysonb/EVA",
-	"title": "github/madysonb/EVA",
-	"url": " https://rseng.github.io/software/repository/github/madysonb/EVA",
-	"content": "Calculate group age using Gaia excess uncertainties"
+	"github/jacobmerson/model-traits": {
+	"id": "github/jacobmerson/model-traits",
+	"title": "github/jacobmerson/model-traits",
+	"url": " https://rseng.github.io/software/repository/github/jacobmerson/model-traits",
+	"content": "simple library for dealing with simulation boundary conditions"
 	},
-	"github/NeoGeographyToolkit/StereoPipeline": {
-	"id": "github/NeoGeographyToolkit/StereoPipeline",
-	"title": "github/NeoGeographyToolkit/StereoPipeline",
-	"url": " https://rseng.github.io/software/repository/github/NeoGeographyToolkit/StereoPipeline",
-	"content": "The NASA Ames Stereo Pipeline is a suite of automated geodesy &amp; stereogrammetry tools designed for processing planetary imagery captured from orbiting and landed robotic explorers on other planets."
+	"github/PennyLaneAI/catalyst": {
+	"id": "github/PennyLaneAI/catalyst",
+	"title": "github/PennyLaneAI/catalyst",
+	"url": " https://rseng.github.io/software/repository/github/PennyLaneAI/catalyst",
+	"content": "A JIT compiler for hybrid quantum programs in PennyLane"
 	},
-	"github/leraman/Hopla": {
-	"id": "github/leraman/Hopla",
-	"title": "github/leraman/Hopla",
-	"url": " https://rseng.github.io/software/repository/github/leraman/Hopla",
-	"content": " Streamlined duo/trio analysis and pedigree haplotyping: from VCF to interactive HTML "
+	"github/ilaudy/PIAO": {
+	"id": "github/ilaudy/PIAO",
+	"title": "github/ilaudy/PIAO",
+	"url": " https://rseng.github.io/software/repository/github/ilaudy/PIAO",
+	"content": "PIAO (漂) is efficient memory-controlled python code using the standard SO algorithm to identify halos."
 	},
-	"github/devnums/pyheartlib": {
-	"id": "github/devnums/pyheartlib",
-	"title": "github/devnums/pyheartlib",
-	"url": " https://rseng.github.io/software/repository/github/devnums/pyheartlib",
-	"content": "A Python package for processing electrocardiogram signals ❤️"
+	"github/y-256/libdivsufsort": {
+	"id": "github/y-256/libdivsufsort",
+	"title": "github/y-256/libdivsufsort",
+	"url": " https://rseng.github.io/software/repository/github/y-256/libdivsufsort",
+	"content": "A lightweight suffix-sorting library"
 	},
-	"github/IBMTRostock/GIFT": {
-	"id": "github/IBMTRostock/GIFT",
-	"title": "github/IBMTRostock/GIFT",
-	"url": " https://rseng.github.io/software/repository/github/IBMTRostock/GIFT",
-	"content": "This work comes from the Institute for Biomedical Engineering (https://ibmt.med.uni-rostock.de/en/) at the University Medical Center Rostock"
+	"github/TravisWheelerLab/VIBES": {
+	"id": "github/TravisWheelerLab/VIBES",
+	"title": "github/TravisWheelerLab/VIBES",
+	"url": " https://rseng.github.io/software/repository/github/TravisWheelerLab/VIBES",
+	"content": "Viral Integrations in Bacterial genomES"
 	},
-	"github/lydialucchesi/Vizumap": {
-	"id": "github/lydialucchesi/Vizumap",
-	"title": "github/lydialucchesi/Vizumap",
-	"url": " https://rseng.github.io/software/repository/github/lydialucchesi/Vizumap",
-	"content": "R package for visualizing uncertainty in spatial data"
+	"github/TravisWheelerLab/NINJA": {
+	"id": "github/TravisWheelerLab/NINJA",
+	"title": "github/TravisWheelerLab/NINJA",
+	"url": " https://rseng.github.io/software/repository/github/TravisWheelerLab/NINJA",
+	"content": "Nearly Infinite Neighbor Joining Application"
 	},
-	"github/HinLeung622/pipes_vis": {
-	"id": "github/HinLeung622/pipes_vis",
-	"title": "github/HinLeung622/pipes_vis",
-	"url": " https://rseng.github.io/software/repository/github/HinLeung622/pipes_vis",
-	"content": "A small, interactive GUI/visualizer tool for SPS spectra, powered by bagpipes"
+	"github/Cantera/cantera": {
+	"id": "github/Cantera/cantera",
+	"title": "github/Cantera/cantera",
+	"url": " https://rseng.github.io/software/repository/github/Cantera/cantera",
+	"content": "Chemical kinetics, thermodynamics, and transport tool suite"
 	},
-	"github/bcgov/shinyssdtools": {
-	"id": "github/bcgov/shinyssdtools",
-	"title": "github/bcgov/shinyssdtools",
-	"url": " https://rseng.github.io/software/repository/github/bcgov/shinyssdtools",
-	"content": "Shiny interface to ssdtools R package"
+	"github/edgardomortiz/Captus": {
+	"id": "github/edgardomortiz/Captus",
+	"title": "github/edgardomortiz/Captus",
+	"url": " https://rseng.github.io/software/repository/github/edgardomortiz/Captus",
+	"content": "Assembly of Phylogenomic Datasets from High-Throughput Sequencing data"
 	},
-	"github/bcgov/bcdata": {
-	"id": "github/bcgov/bcdata",
-	"title": "github/bcgov/bcdata",
-	"url": " https://rseng.github.io/software/repository/github/bcgov/bcdata",
-	"content": "An R package for searching &amp; retrieving data from the B.C. Data Catalogue"
+	"github/ben-cassese/squishyplanet": {
+	"id": "github/ben-cassese/squishyplanet",
+	"title": "github/ben-cassese/squishyplanet",
+	"url": " https://rseng.github.io/software/repository/github/ben-cassese/squishyplanet",
+	"content": "Transits of non-spherical exoplanets"
 	},
-	"github/agnetelundgaard/BALDR": {
-	"id": "github/agnetelundgaard/BALDR",
-	"title": "github/agnetelundgaard/BALDR",
-	"url": " https://rseng.github.io/software/repository/github/agnetelundgaard/BALDR",
-	"content": "None"
+	"github/LeoEgidi/pivmet": {
+	"id": "github/LeoEgidi/pivmet",
+	"title": "github/LeoEgidi/pivmet",
+	"url": " https://rseng.github.io/software/repository/github/LeoEgidi/pivmet",
+	"content": "pivmet: an R package proposing pivotal methods for consensus clustering   and mixture modeling"
+	},
+	"github/moeyensj/atm": {
+	"id": "github/moeyensj/atm",
+	"title": "github/moeyensj/atm",
+	"url": " https://rseng.github.io/software/repository/github/moeyensj/atm",
+	"content": "Asteroid Thermal Modeling"
 	},
-	"github/PopMedNet-Team/popmednet": {
-	"id": "github/PopMedNet-Team/popmednet",
-	"title": "github/PopMedNet-Team/popmednet",
-	"url": " https://rseng.github.io/software/repository/github/PopMedNet-Team/popmednet",
-	"content": "This is the repository for the open source code of the distributed data network platform PopMedNet"
+	"github/kieranatkins/gimp-image-annotator": {
+	"id": "github/kieranatkins/gimp-image-annotator",
+	"title": "github/kieranatkins/gimp-image-annotator",
+	"url": " https://rseng.github.io/software/repository/github/kieranatkins/gimp-image-annotator",
+	"content": "A GIMP plug-in to allow for direct generation of semantic segementation masks for use in machine learning projects, using the power of the GIMP selection tools."
 	},
-	"github/luizfelippesr/galmag": {
-	"id": "github/luizfelippesr/galmag",
-	"title": "github/luizfelippesr/galmag",
-	"url": " https://rseng.github.io/software/repository/github/luizfelippesr/galmag",
-	"content": "GalMag - A Python tool for computing realistic galactic magnetic fields"
+	"github/kieranatkins/silique-detector": {
+	"id": "github/kieranatkins/silique-detector",
+	"title": "github/kieranatkins/silique-detector",
+	"url": " https://rseng.github.io/software/repository/github/kieranatkins/silique-detector",
+	"content": "Model weights, inference code and phenotyping code associated with the paper &#34;Deep Learning Phenotyping of Arabidopsis Fruits with QTL Analysis Verification&#34; by Atkins et al."
 	},
-	"github/luizfelippesr/magnetizer": {
-	"id": "github/luizfelippesr/magnetizer",
-	"title": "github/luizfelippesr/magnetizer",
-	"url": " https://rseng.github.io/software/repository/github/luizfelippesr/magnetizer",
-	"content": "Magnetizer - A Fortran code that post-processes the output of a semi-analytic model of galaxy formation and produces a catalogue of galaxies with detailed radial dependent ISM properties, including magnetic fields"
+	"github/gem-pasteur/macsyfinder": {
+	"id": "github/gem-pasteur/macsyfinder",
+	"title": "github/gem-pasteur/macsyfinder",
+	"url": " https://rseng.github.io/software/repository/github/gem-pasteur/macsyfinder",
+	"content": "MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search."
 	},
-	"github/ThomasMBury/ewstools": {
-	"id": "github/ThomasMBury/ewstools",
-	"title": "github/ThomasMBury/ewstools",
-	"url": " https://rseng.github.io/software/repository/github/ThomasMBury/ewstools",
-	"content": "Python package for early warning signals (EWS) of bifurcations in time series data."
+	"github/gem-pasteur/Integron_Finder": {
+	"id": "github/gem-pasteur/Integron_Finder",
+	"title": "github/gem-pasteur/Integron_Finder",
+	"url": " https://rseng.github.io/software/repository/github/gem-pasteur/Integron_Finder",
+	"content": "Bioinformatics tool to find integrons in bacterial genomes"
 	},
-	"github/bcgsc/ntHash": {
-	"id": "github/bcgsc/ntHash",
-	"title": "github/bcgsc/ntHash",
-	"url": " https://rseng.github.io/software/repository/github/bcgsc/ntHash",
-	"content": "Fast hash function for DNA sequences"
+	"github/vcftools/index.html": {
+	"id": "github/vcftools/index.html",
+	"title": "github/vcftools/index.html",
+	"url": " https://rseng.github.io/software/repository/github/vcftools/index.html",
+	"content": "a program package designed to provide easily accessible methods for working with complex genetic variation data in the form of VCF files, such as those generated by the 1000 Genomes Project."
 	},
-	"github/bcgsc/tigmint": {
-	"id": "github/bcgsc/tigmint",
-	"title": "github/bcgsc/tigmint",
-	"url": " https://rseng.github.io/software/repository/github/bcgsc/tigmint",
-	"content": "⛓ Correct misassemblies using linked AND long reads"
+	"github/zhoulinumass/ML-wPBE": {
+	"id": "github/zhoulinumass/ML-wPBE",
+	"title": "github/zhoulinumass/ML-wPBE",
+	"url": " https://rseng.github.io/software/repository/github/zhoulinumass/ML-wPBE",
+	"content": "None"
 	},
-	"github/bcgsc/ntCard": {
-	"id": "github/bcgsc/ntCard",
-	"title": "github/bcgsc/ntCard",
-	"url": " https://rseng.github.io/software/repository/github/bcgsc/ntCard",
-	"content": "Estimating k-mer coverage histogram of genomics data"
+	"github/ADThomas-astro/oxaf": {
+	"id": "github/ADThomas-astro/oxaf",
+	"title": "github/ADThomas-astro/oxaf",
+	"url": " https://rseng.github.io/software/repository/github/ADThomas-astro/oxaf",
+	"content": "None"
 	},
-	"github/bcgsc/arcs": {
-	"id": "github/bcgsc/arcs",
-	"title": "github/bcgsc/arcs",
-	"url": " https://rseng.github.io/software/repository/github/bcgsc/arcs",
-	"content": "🌈Scaffold genome sequence assemblies using linked read sequencing data"
+	"github/JPenuchot/ctbench": {
+	"id": "github/JPenuchot/ctbench",
+	"title": "github/JPenuchot/ctbench",
+	"url": " https://rseng.github.io/software/repository/github/JPenuchot/ctbench",
+	"content": "Compiler-assisted variable size benchmarking for the study of C++ metaprogram compile times."
 	},
-	"github/bcgsc/abyss": {
-	"id": "github/bcgsc/abyss",
-	"title": "github/bcgsc/abyss",
-	"url": " https://rseng.github.io/software/repository/github/bcgsc/abyss",
-	"content": ":microscope: Assemble large genomes using short reads"
+	"github/jradavenport/TheHammer": {
+	"id": "github/jradavenport/TheHammer",
+	"title": "github/jradavenport/TheHammer",
+	"url": " https://rseng.github.io/software/repository/github/jradavenport/TheHammer",
+	"content": "The Hammer: An IDL Spectral Typing Suite"
 	},
-	"github/bcgsc/longstitch": {
-	"id": "github/bcgsc/longstitch",
-	"title": "github/bcgsc/longstitch",
-	"url": " https://rseng.github.io/software/repository/github/bcgsc/longstitch",
-	"content": "Correct and scaffold assemblies using long reads"
+	"github/jradavenport/FBEYE": {
+	"id": "github/jradavenport/FBEYE",
+	"title": "github/jradavenport/FBEYE",
+	"url": " https://rseng.github.io/software/repository/github/jradavenport/FBEYE",
+	"content": "Flares By Eye, an IDL suite for analyzing Kepler light curves and validating flares"
 	},
-	"github/bcgsc/btllib": {
-	"id": "github/bcgsc/btllib",
-	"title": "github/bcgsc/btllib",
-	"url": " https://rseng.github.io/software/repository/github/bcgsc/btllib",
-	"content": "Bioinformatics Technology Lab common code library"
+	"github/jradavenport/appaloosa": {
+	"id": "github/jradavenport/appaloosa",
+	"title": "github/jradavenport/appaloosa",
+	"url": " https://rseng.github.io/software/repository/github/jradavenport/appaloosa",
+	"content": "Python-based flare finding code for Kepler light curves."
 	},
-	"github/bcgsc/TMBur": {
-	"id": "github/bcgsc/TMBur",
-	"title": "github/bcgsc/TMBur",
-	"url": " https://rseng.github.io/software/repository/github/bcgsc/TMBur",
-	"content": "Derive TMB estimates from whole genome fastq files.    Runs alignment and variant calling before reporting a variety of TMB estimates"
+	"github/t-brandt/orvara": {
+	"id": "github/t-brandt/orvara",
+	"title": "github/t-brandt/orvara",
+	"url": " https://rseng.github.io/software/repository/github/t-brandt/orvara",
+	"content": "None"
 	},
-	"github/bcgsc/NanoSim": {
-	"id": "github/bcgsc/NanoSim",
-	"title": "github/bcgsc/NanoSim",
-	"url": " https://rseng.github.io/software/repository/github/bcgsc/NanoSim",
-	"content": "Nanopore sequence read simulator"
+	"github/t-brandt/fitramp": {
+	"id": "github/t-brandt/fitramp",
+	"title": "github/t-brandt/fitramp",
+	"url": " https://rseng.github.io/software/repository/github/t-brandt/fitramp",
+	"content": "Fit a ramp to a series of nondestructive reads, detect and reject jumps."
 	},
-	"github/bcgsc/goldrush": {
-	"id": "github/bcgsc/goldrush",
-	"title": "github/bcgsc/goldrush",
-	"url": " https://rseng.github.io/software/repository/github/bcgsc/goldrush",
-	"content": "Linear-time de novo Long Read Assembler"
+	"github/t-brandt/acorns-adi": {
+	"id": "github/t-brandt/acorns-adi",
+	"title": "github/t-brandt/acorns-adi",
+	"url": " https://rseng.github.io/software/repository/github/t-brandt/acorns-adi",
+	"content": "A software package to reduce angular differential imaging data from Subaru/HiCIAO"
 	},
-	"github/jfoster17/extinction-distances": {
-	"id": "github/jfoster17/extinction-distances",
-	"title": "github/jfoster17/extinction-distances",
-	"url": " https://rseng.github.io/software/repository/github/jfoster17/extinction-distances",
-	"content": "Code to implement the blue star number count method from Foster et al. (2012) http://adsabs.harvard.edu/abs/2012ApJ...751..157F"
+	"github/CMakePP/CMinx": {
+	"id": "github/CMakePP/CMinx",
+	"title": "github/CMakePP/CMinx",
+	"url": " https://rseng.github.io/software/repository/github/CMakePP/CMinx",
+	"content": "Generates API documentation for CMake functions and macros"
 	},
-	"github/parkus/fiducial_flare": {
-	"id": "github/parkus/fiducial_flare",
-	"title": "github/parkus/fiducial_flare",
-	"url": " https://rseng.github.io/software/repository/github/parkus/fiducial_flare",
-	"content": "Generate spectra and lightcurves of a standardized far ultraviolet flare."
+	"github/CMakePP/CMakePPLang": {
+	"id": "github/CMakePP/CMakePPLang",
+	"title": "github/CMakePP/CMakePPLang",
+	"url": " https://rseng.github.io/software/repository/github/CMakePP/CMakePPLang",
+	"content": "Object-oriented extension to the CMake language."
 	},
-	"github/parkus/ffd": {
-	"id": "github/parkus/ffd",
-	"title": "github/parkus/ffd",
-	"url": " https://rseng.github.io/software/repository/github/parkus/ffd",
-	"content": "Tools for the analysis of flare frequency distributions for flares detected in heterogenous datasets."
+	"github/CaymanUnterborn/ExoPlex": {
+	"id": "github/CaymanUnterborn/ExoPlex",
+	"title": "github/CaymanUnterborn/ExoPlex",
+	"url": " https://rseng.github.io/software/repository/github/CaymanUnterborn/ExoPlex",
+	"content": "A thermodynamically self-consistent mass-radius-composition calculator"
 	},
-	"github/parkus/scicatalog": {
-	"id": "github/parkus/scicatalog",
-	"title": "github/parkus/scicatalog",
-	"url": " https://rseng.github.io/software/repository/github/parkus/scicatalog",
+	"github/mcgalcode/pylattica": {
+	"id": "github/mcgalcode/pylattica",
+	"title": "github/mcgalcode/pylattica",
+	"url": " https://rseng.github.io/software/repository/github/mcgalcode/pylattica",
+	"content": "A simple framework for prototyping lattice evolution simulations e.g. cellular automata, lattice gas simulations, lattice Monte Carlo etc."
+	},
+	"github/VarStarDetect/varstardetect": {
+	"id": "github/VarStarDetect/varstardetect",
+	"title": "github/VarStarDetect/varstardetect",
+	"url": " https://rseng.github.io/software/repository/github/VarStarDetect/varstardetect",
 	"content": "None"
 	},
-	"github/MichielsenM/FOAM": {
-	"id": "github/MichielsenM/FOAM",
-	"title": "github/MichielsenM/FOAM",
-	"url": " https://rseng.github.io/software/repository/github/MichielsenM/FOAM",
-	"content": "A Python package for forward asteroseismic modelling of gravity modes"
+	"github/jordanlab/STing": {
+	"id": "github/jordanlab/STing",
+	"title": "github/jordanlab/STing",
+	"url": " https://rseng.github.io/software/repository/github/jordanlab/STing",
+	"content": "Ultrafast sequence typing and gene detection from NGS raw reads"
 	},
-	"github/alejandroaviles/fkpt": {
-	"id": "github/alejandroaviles/fkpt",
-	"title": "github/alejandroaviles/fkpt",
-	"url": " https://rseng.github.io/software/repository/github/alejandroaviles/fkpt",
-	"content": "Perturbation theory with &#34;fk&#34;-Kernels"
+	"github/ejeschke/ginga": {
+	"id": "github/ejeschke/ginga",
+	"title": "github/ejeschke/ginga",
+	"url": " https://rseng.github.io/software/repository/github/ejeschke/ginga",
+	"content": "The Ginga astronomical FITS file viewer"
 	},
-	"github/UUDigitalHumanitieslab/texcavator": {
-	"id": "github/UUDigitalHumanitieslab/texcavator",
-	"title": "github/UUDigitalHumanitieslab/texcavator",
-	"url": " https://rseng.github.io/software/repository/github/UUDigitalHumanitieslab/texcavator",
-	"content": "Text mining on the Royal Library newspaper corpus"
+	"github/TeamCOMPAS/COMPAS": {
+	"id": "github/TeamCOMPAS/COMPAS",
+	"title": "github/TeamCOMPAS/COMPAS",
+	"url": " https://rseng.github.io/software/repository/github/TeamCOMPAS/COMPAS",
+	"content": "COMPAS rapid binary population synthesis code"
 	},
-	"github/alexander-mead/collapse": {
-	"id": "github/alexander-mead/collapse",
-	"title": "github/alexander-mead/collapse",
-	"url": " https://rseng.github.io/software/repository/github/alexander-mead/collapse",
-	"content": "Spherical-collapse model code"
+	"github/sfarrens/sf_deconvolve": {
+	"id": "github/sfarrens/sf_deconvolve",
+	"title": "github/sfarrens/sf_deconvolve",
+	"url": " https://rseng.github.io/software/repository/github/sfarrens/sf_deconvolve",
+	"content": "A Python code designed for PSF deconvolution using a low-rank approximation and sparsity. The code can handle a fixed PSF for the entire field or a stack of PSFs for each galaxy position."
 	},
-	"github/alexander-mead/pyhalomodel": {
-	"id": "github/alexander-mead/pyhalomodel",
-	"title": "github/alexander-mead/pyhalomodel",
-	"url": " https://rseng.github.io/software/repository/github/alexander-mead/pyhalomodel",
-	"content": "A pure Python halo-model implementation for power spectra of any large-scale structure tracer combination."
+	"github/sfarrens/sfof": {
+	"id": "github/sfarrens/sfof",
+	"title": "github/sfarrens/sfof",
+	"url": " https://rseng.github.io/software/repository/github/sfarrens/sfof",
+	"content": "SFoF is a friends-of-friends galaxy cluster detection algorithm that operates in either spectroscopic or photometric redshift space. The linking parameters, both transverse and along the line-of-sight, change as a function of redshift to account for selection effects.  The code is written in C++ and implements OMP to loop through the photometric redshift bins."
 	},
-	"github/alexander-mead/HMcode": {
-	"id": "github/alexander-mead/HMcode",
-	"title": "github/alexander-mead/HMcode",
-	"url": " https://rseng.github.io/software/repository/github/alexander-mead/HMcode",
-	"content": "Augmented halo model for accurate non-linear matter power spectrum calculations"
+	"github/mjuvela/ISM": {
+	"id": "github/mjuvela/ISM",
+	"title": "github/mjuvela/ISM",
+	"url": " https://rseng.github.io/software/repository/github/mjuvela/ISM",
+	"content": "Various programs related to interstellar medium (ISM) studies"
 	},
-	"github/smsharma/fermi-gce-flows": {
-	"id": "github/smsharma/fermi-gce-flows",
-	"title": "github/smsharma/fermi-gce-flows",
-	"url": " https://rseng.github.io/software/repository/github/smsharma/fermi-gce-flows",
-	"content": "Simulation-based inference for the Galactic Center gamma-ray excess. Code repository associated with https://arxiv.org/abs/2110.06931."
+	"github/TeamLEGWORK/LEGWORK": {
+	"id": "github/TeamLEGWORK/LEGWORK",
+	"title": "github/TeamLEGWORK/LEGWORK",
+	"url": " https://rseng.github.io/software/repository/github/TeamLEGWORK/LEGWORK",
+	"content": "simple package for gravitational wave calculations "
 	},
-	"github/smsharma/dark-photons-perturbations": {
-	"id": "github/smsharma/dark-photons-perturbations",
-	"title": "github/smsharma/dark-photons-perturbations",
-	"url": " https://rseng.github.io/software/repository/github/smsharma/dark-photons-perturbations",
-	"content": "Dark photon conversions in our inhomogeneous Universe. Code repository associated with the papers https://arxiv.org/abs/2002.05165 and https://arxiv.org/abs/2004.06733."
+	"github/bio-ontology-research-group/deepgoplus": {
+	"id": "github/bio-ontology-research-group/deepgoplus",
+	"title": "github/bio-ontology-research-group/deepgoplus",
+	"url": " https://rseng.github.io/software/repository/github/bio-ontology-research-group/deepgoplus",
+	"content": "DeepGO with GOPlus axioms"
 	},
-	"github/smsharma/mining-for-substructure-lens": {
-	"id": "github/smsharma/mining-for-substructure-lens",
-	"title": "github/smsharma/mining-for-substructure-lens",
-	"url": " https://rseng.github.io/software/repository/github/smsharma/mining-for-substructure-lens",
-	"content": "Inference of substructure properties in strong lensing systems with machine learning. Code repository associated with https://arxiv.org/abs/1909.02005."
+	"github/skovaka/UNCALLED": {
+	"id": "github/skovaka/UNCALLED",
+	"title": "github/skovaka/UNCALLED",
+	"url": " https://rseng.github.io/software/repository/github/skovaka/UNCALLED",
+	"content": "Raw nanopore signal mapper that enables real-time targeted sequencing"
 	},
-	"github/i-VRESSE/workflow-builder": {
-	"id": "github/i-VRESSE/workflow-builder",
-	"title": "github/i-VRESSE/workflow-builder",
-	"url": " https://rseng.github.io/software/repository/github/i-VRESSE/workflow-builder",
-	"content": "Graphical interface to build a workflow file"
+	"github/RTIInternational/gobbli": {
+	"id": "github/RTIInternational/gobbli",
+	"title": "github/RTIInternational/gobbli",
+	"url": " https://rseng.github.io/software/repository/github/RTIInternational/gobbli",
+	"content": "Deep learning with text doesn&#39;t have to be scary."
 	},
-	"github/i-VRESSE/pdbtbx-ts": {
-	"id": "github/i-VRESSE/pdbtbx-ts",
-	"title": "github/i-VRESSE/pdbtbx-ts",
-	"url": " https://rseng.github.io/software/repository/github/i-VRESSE/pdbtbx-ts",
-	"content": "JS wrapper around pdbtbx rust crate"
+	"github/siavash-saki/tesspy": {
+	"id": "github/siavash-saki/tesspy",
+	"title": "github/siavash-saki/tesspy",
+	"url": " https://rseng.github.io/software/repository/github/siavash-saki/tesspy",
+	"content": "None"
 	},
-	"github/p-slash/qsonic": {
-	"id": "github/p-slash/qsonic",
-	"title": "github/p-slash/qsonic",
-	"url": " https://rseng.github.io/software/repository/github/p-slash/qsonic",
-	"content": "Continuum fitting for DESI"
+	"github/MetazoaPhylogenomicsLab/FANTASIA": {
+	"id": "github/MetazoaPhylogenomicsLab/FANTASIA",
+	"title": "github/MetazoaPhylogenomicsLab/FANTASIA",
+	"url": " https://rseng.github.io/software/repository/github/MetazoaPhylogenomicsLab/FANTASIA",
+	"content": "None"
 	},
-	"github/idruglab/hignn": {
-	"id": "github/idruglab/hignn",
-	"title": "github/idruglab/hignn",
-	"url": " https://rseng.github.io/software/repository/github/idruglab/hignn",
-	"content": "Code for &#34;HiGNN: A Hierarchical Informative Graph Neural Network for Molecular Property Prediction Equipped with Feature-Wise Attention&#34;"
+	"github/EpiVec/TDLM": {
+	"id": "github/EpiVec/TDLM",
+	"title": "github/EpiVec/TDLM",
+	"url": " https://rseng.github.io/software/repository/github/EpiVec/TDLM",
+	"content": ":package: Systematic comparison of trip distribution laws and models"
 	},
-	"github/kateharborne/SimSpin": {
-	"id": "github/kateharborne/SimSpin",
-	"title": "github/kateharborne/SimSpin",
-	"url": " https://rseng.github.io/software/repository/github/kateharborne/SimSpin",
-	"content": "SimSpin - A package for the kinematic analysis of galaxy simulations"
+	"github/david-mathews-1994/deltarice": {
+	"id": "github/david-mathews-1994/deltarice",
+	"title": "github/david-mathews-1994/deltarice",
+	"url": " https://rseng.github.io/software/repository/github/david-mathews-1994/deltarice",
+	"content": "A high-performance compression library optimized for up-to 16-bit digitized analog signals"
 	},
-	"github/joshuakt/Oxygen-False-Positives": {
-	"id": "github/joshuakt/Oxygen-False-Positives",
-	"title": "github/joshuakt/Oxygen-False-Positives",
-	"url": " https://rseng.github.io/software/repository/github/joshuakt/Oxygen-False-Positives",
-	"content": "Python source code for planetary evolution model described in Krissansen-Totton et al. (2021; AGU Advances)"
+	"github/cbirdferrer/collatrix": {
+	"id": "github/cbirdferrer/collatrix",
+	"title": "github/cbirdferrer/collatrix",
+	"url": " https://rseng.github.io/software/repository/github/cbirdferrer/collatrix",
+	"content": "this tool collates the outputs of the MorphoMetriX photogrammetry tool"
 	},
-	"github/quantling/pyndl": {
-	"id": "github/quantling/pyndl",
-	"title": "github/quantling/pyndl",
-	"url": " https://rseng.github.io/software/repository/github/quantling/pyndl",
-	"content": "pyndl implements a Naive discriminative learning which is a learning and classification models based on the Rescorla-Wagner equations in python3."
+	"github/eggplantbren/DNest3": {
+	"id": "github/eggplantbren/DNest3",
+	"title": "github/eggplantbren/DNest3",
+	"url": " https://rseng.github.io/software/repository/github/eggplantbren/DNest3",
+	"content": "Diffusive Nested Sampling"
 	},
-	"github/xraypy/xraylarch": {
-	"id": "github/xraypy/xraylarch",
-	"title": "github/xraypy/xraylarch",
-	"url": " https://rseng.github.io/software/repository/github/xraypy/xraylarch",
-	"content": "Larch: Applications and Python Library for Data Analysis of X-ray Absorption Spectroscopy (XAS, XANES, XAFS, EXAFS), X-ray Fluorescence (XRF) Spectroscopy and Imaging, and more."
+	"github/eggplantbren/DNest4": {
+	"id": "github/eggplantbren/DNest4",
+	"title": "github/eggplantbren/DNest4",
+	"url": " https://rseng.github.io/software/repository/github/eggplantbren/DNest4",
+	"content": "Diffusive Nested Sampling"
 	},
-	"github/spack/spack": {
-	"id": "github/spack/spack",
-	"title": "github/spack/spack",
-	"url": " https://rseng.github.io/software/repository/github/spack/spack",
-	"content": "A flexible package manager that supports multiple versions, configurations, platforms, and compilers."
+	"github/eggplantbren/Exoplanet": {
+	"id": "github/eggplantbren/Exoplanet",
+	"title": "github/eggplantbren/Exoplanet",
+	"url": " https://rseng.github.io/software/repository/github/eggplantbren/Exoplanet",
+	"content": "Exoplanet stuff with RJObject and lookup tables"
 	},
-	"github/jan-rybizki/gdr2_completeness": {
-	"id": "github/jan-rybizki/gdr2_completeness",
-	"title": "github/jan-rybizki/gdr2_completeness",
-	"url": " https://rseng.github.io/software/repository/github/jan-rybizki/gdr2_completeness",
-	"content": "This package helps with downloading GaiaDR2 data and gives approximate completeness maps over the sky and per G magntude bin. It also has a function to query the GDR2 RVS sample selection function."
+	"github/eggplantbren/RJObject": {
+	"id": "github/eggplantbren/RJObject",
+	"title": "github/eggplantbren/RJObject",
+	"url": " https://rseng.github.io/software/repository/github/eggplantbren/RJObject",
+	"content": "General code for birth/death stuff within DNest3"
 	},
-	"github/jan-rybizki/Galaxia_wrap": {
-	"id": "github/jan-rybizki/Galaxia_wrap",
-	"title": "github/jan-rybizki/Galaxia_wrap",
-	"url": " https://rseng.github.io/software/repository/github/jan-rybizki/Galaxia_wrap",
-	"content": "A few python scripts and a tutorial notebook to create and manipulate Galaxia mock catalogues"
+	"github/eggplantbren/RMHB": {
+	"id": "github/eggplantbren/RMHB",
+	"title": "github/eggplantbren/RMHB",
+	"url": " https://rseng.github.io/software/repository/github/eggplantbren/RMHB",
+	"content": "Source code for &#39;hierarchical reverberation mapping&#39;"
 	},
-	"github/jan-rybizki/Chempy": {
-	"id": "github/jan-rybizki/Chempy",
-	"title": "github/jan-rybizki/Chempy",
-	"url": " https://rseng.github.io/software/repository/github/jan-rybizki/Chempy",
-	"content": "Start with the Chempy tutorial"
+	"github/natashabatalha/picaso": {
+	"id": "github/natashabatalha/picaso",
+	"title": "github/natashabatalha/picaso",
+	"url": " https://rseng.github.io/software/repository/github/natashabatalha/picaso",
+	"content": "A Planetary Intensity Code for Atmospheric Spectroscopy Observations"
 	},
-	"github/LCOGT/banzai": {
-	"id": "github/LCOGT/banzai",
-	"title": "github/LCOGT/banzai",
-	"url": " https://rseng.github.io/software/repository/github/LCOGT/banzai",
-	"content": "Beautiful Algorithms to Normalize Zillions of Astronomical Images"
+	"github/natashabatalha/PandExo": {
+	"id": "github/natashabatalha/PandExo",
+	"title": "github/natashabatalha/PandExo",
+	"url": " https://rseng.github.io/software/repository/github/natashabatalha/PandExo",
+	"content": "A Community Tool for Transiting Exoplanet Science with the JWST &amp; HST"
 	},
-	"github/LCOGT/banzai-nres": {
-	"id": "github/LCOGT/banzai-nres",
-	"title": "github/LCOGT/banzai-nres",
-	"url": " https://rseng.github.io/software/repository/github/LCOGT/banzai-nres",
-	"content": "BANZAI Data Reduction Pipeline for NRES"
+	"github/morpheus-project/morpheus": {
+	"id": "github/morpheus-project/morpheus",
+	"title": "github/morpheus-project/morpheus",
+	"url": " https://rseng.github.io/software/repository/github/morpheus-project/morpheus",
+	"content": "A Library For Generating Morphological Semantic Segmentation Maps of Astronomical Images"
 	},
-	"github/LCOGT/neoexchange": {
-	"id": "github/LCOGT/neoexchange",
-	"title": "github/LCOGT/neoexchange",
-	"url": " https://rseng.github.io/software/repository/github/LCOGT/neoexchange",
-	"content": "NEO observing portal"
+	"github/jolie/tquery": {
+	"id": "github/jolie/tquery",
+	"title": "github/jolie/tquery",
+	"url": " https://rseng.github.io/software/repository/github/jolie/tquery",
+	"content": "A data-query framework based on a sound variant of the MongoDB aggregation framework"
 	},
-	"github/QITI/pySLM2": {
-	"id": "github/QITI/pySLM2",
-	"title": "github/QITI/pySLM2",
-	"url": " https://rseng.github.io/software/repository/github/QITI/pySLM2",
-	"content": "None"
+	"github/brinckmann/montepython_public": {
+	"id": "github/brinckmann/montepython_public",
+	"title": "github/brinckmann/montepython_public",
+	"url": " https://rseng.github.io/software/repository/github/brinckmann/montepython_public",
+	"content": "Public repository for the Monte Python Code"
 	},
-	"github/FlowModelingControl/flowtorch": {
-	"id": "github/FlowModelingControl/flowtorch",
-	"title": "github/FlowModelingControl/flowtorch",
-	"url": " https://rseng.github.io/software/repository/github/FlowModelingControl/flowtorch",
-	"content": "flowTorch - a Python library for analysis and reduced-order modeling of fluid flows"
+	"github/dolaver/calsagos": {
+	"id": "github/dolaver/calsagos",
+	"title": "github/dolaver/calsagos",
+	"url": " https://rseng.github.io/software/repository/github/dolaver/calsagos",
+	"content": "Config files for my GitHub profile."
 	},
-	"github/yupidevs/pactus": {
-	"id": "github/yupidevs/pactus",
-	"title": "github/yupidevs/pactus",
-	"url": " https://rseng.github.io/software/repository/github/yupidevs/pactus",
-	"content": "Framework to evaluate Trajectory Classification Algorithms"
+	"github/mary77/scQcut": {
+	"id": "github/mary77/scQcut",
+	"title": "github/mary77/scQcut",
+	"url": " https://rseng.github.io/software/repository/github/mary77/scQcut",
+	"content": "A completely parameter-free method for graph-based single cell RNA-seq clustering"
 	},
-	"github/ACTCollaboration/zCluster": {
-	"id": "github/ACTCollaboration/zCluster",
-	"title": "github/ACTCollaboration/zCluster",
-	"url": " https://rseng.github.io/software/repository/github/ACTCollaboration/zCluster",
-	"content": "A package for measuring galaxy cluster photometric redshifts using data from large public surveys."
+	"github/arnikz/PIQMIe": {
+	"id": "github/arnikz/PIQMIe",
+	"title": "github/arnikz/PIQMIe",
+	"url": " https://rseng.github.io/software/repository/github/arnikz/PIQMIe",
+	"content": "Proteomics Identifications &amp; Quantitations Data Management &amp; Integration Service"
 	},
-	"github/SERVIR/servir-aces": {
-	"id": "github/SERVIR/servir-aces",
-	"title": "github/SERVIR/servir-aces",
-	"url": " https://rseng.github.io/software/repository/github/SERVIR/servir-aces",
-	"content": "Agricultural Classification and Estimation Service"
+	"github/RajLabMSSM/echolocatoR": {
+	"id": "github/RajLabMSSM/echolocatoR",
+	"title": "github/RajLabMSSM/echolocatoR",
+	"url": " https://rseng.github.io/software/repository/github/RajLabMSSM/echolocatoR",
+	"content": "Automated statistical and functional fine-mapping pipeline with extensive API access to datasets."
 	},
-	"github/s-abbas/robnptests": {
-	"id": "github/s-abbas/robnptests",
-	"title": "github/s-abbas/robnptests",
-	"url": " https://rseng.github.io/software/repository/github/s-abbas/robnptests",
-	"content": "Robust two-sample tests for the location problem"
+	"github/jkrogager/VoigtFit": {
+	"id": "github/jkrogager/VoigtFit",
+	"title": "github/jkrogager/VoigtFit",
+	"url": " https://rseng.github.io/software/repository/github/jkrogager/VoigtFit",
+	"content": "Python code to fit absorption lines semi-interactively"
 	},
-	"github/d-tear/SIAL": {
-	"id": "github/d-tear/SIAL",
-	"title": "github/d-tear/SIAL",
-	"url": " https://rseng.github.io/software/repository/github/d-tear/SIAL",
-	"content": "Simple Image Analysis Library"
+	"github/onnela-lab/beiwe-backend": {
+	"id": "github/onnela-lab/beiwe-backend",
+	"title": "github/onnela-lab/beiwe-backend",
+	"url": " https://rseng.github.io/software/repository/github/onnela-lab/beiwe-backend",
+	"content": "Beiwe is a smartphone-based digital phenotyping research platform. This is the Beiwe backend code"
 	},
-	"github/spacetelescope/specviz": {
-	"id": "github/spacetelescope/specviz",
-	"title": "github/spacetelescope/specviz",
-	"url": " https://rseng.github.io/software/repository/github/spacetelescope/specviz",
-	"content": "An interactive astronomical 1D spectra analysis tool."
+	"github/KennethEnevoldsen/augmenty": {
+	"id": "github/KennethEnevoldsen/augmenty",
+	"title": "github/KennethEnevoldsen/augmenty",
+	"url": " https://rseng.github.io/software/repository/github/KennethEnevoldsen/augmenty",
+	"content": "Augmenty is an augmentation library based on spaCy for augmenting texts."
+	},
+	"github/cthoyt/bel-resources": {
+	"id": "github/cthoyt/bel-resources",
+	"title": "github/cthoyt/bel-resources",
+	"url": " https://rseng.github.io/software/repository/github/cthoyt/bel-resources",
+	"content": "Utilities for BEL resource files."
+	},
+	"github/seqan/lara": {
+	"id": "github/seqan/lara",
+	"title": "github/seqan/lara",
+	"url": " https://rseng.github.io/software/repository/github/seqan/lara",
+	"content": "LaRA 2: Lagrangian Relaxed structural Alignment"
 	},
-	"github/spacetelescope/jdaviz": {
-	"id": "github/spacetelescope/jdaviz",
-	"title": "github/spacetelescope/jdaviz",
-	"url": " https://rseng.github.io/software/repository/github/spacetelescope/jdaviz",
-	"content": "JWST astronomical data analysis tools in the Jupyter platform"
+	"github/seqan/flexbar": {
+	"id": "github/seqan/flexbar",
+	"title": "github/seqan/flexbar",
+	"url": " https://rseng.github.io/software/repository/github/seqan/flexbar",
+	"content": "flexible barcode and adapter removal"
 	},
-	"github/spacetelescope/specview": {
-	"id": "github/spacetelescope/specview",
-	"title": "github/spacetelescope/specview",
-	"url": " https://rseng.github.io/software/repository/github/spacetelescope/specview",
-	"content": "Archived, see https://github.com/spacetelescope/specviz for future development. Spectrum visualization, manipulation,  and fitting"
+	"github/seqan/lambda": {
+	"id": "github/seqan/lambda",
+	"title": "github/seqan/lambda",
+	"url": " https://rseng.github.io/software/repository/github/seqan/lambda",
+	"content": "LAMBDA – the Local Aligner for Massive Biological DatA "
 	},
-	"github/spacetelescope/mirage": {
-	"id": "github/spacetelescope/mirage",
-	"title": "github/spacetelescope/mirage",
-	"url": " https://rseng.github.io/software/repository/github/spacetelescope/mirage",
-	"content": "This code can be used to generate simulated NIRCam, NIRISS, or FGS data "
+	"github/aaryapatil/tapify": {
+	"id": "github/aaryapatil/tapify",
+	"title": "github/aaryapatil/tapify",
+	"url": " https://rseng.github.io/software/repository/github/aaryapatil/tapify",
+	"content": "Multitaper spectrum for time-series analysis"
 	},
-	"github/spacetelescope/stsynphot_refactor": {
-	"id": "github/spacetelescope/stsynphot_refactor",
-	"title": "github/spacetelescope/stsynphot_refactor",
-	"url": " https://rseng.github.io/software/repository/github/spacetelescope/stsynphot_refactor",
-	"content": "Synthetic photometry using Astropy for HST and JWST"
+	"github/devanshkv/fetch": {
+	"id": "github/devanshkv/fetch",
+	"title": "github/devanshkv/fetch",
+	"url": " https://rseng.github.io/software/repository/github/devanshkv/fetch",
+	"content": "A set of deep learning models for FRB/RFI binary classification. "
 	},
-	"github/spacetelescope/pystortion": {
-	"id": "github/spacetelescope/pystortion",
-	"title": "github/spacetelescope/pystortion",
-	"url": " https://rseng.github.io/software/repository/github/spacetelescope/pystortion",
-	"content": "None"
+	"github/matteozennaro/reps": {
+	"id": "github/matteozennaro/reps",
+	"title": "github/matteozennaro/reps",
+	"url": " https://rseng.github.io/software/repository/github/matteozennaro/reps",
+	"content": "REPS - rescaled power spectra for initial conditions with massive neutrinos"
 	},
-	"github/spacetelescope/stginga": {
-	"id": "github/spacetelescope/stginga",
-	"title": "github/spacetelescope/stginga",
-	"url": " https://rseng.github.io/software/repository/github/spacetelescope/stginga",
-	"content": "Ginga products specific to STScI data analysis."
+	"github/magnuspalmblad/shic": {
+	"id": "github/magnuspalmblad/shic",
+	"title": "github/magnuspalmblad/shic",
+	"url": " https://rseng.github.io/software/repository/github/magnuspalmblad/shic",
+	"content": "shic is a collection of shims for use in automated workflow composition"
 	},
-	"github/spacetelescope/stsdas_stripped": {
-	"id": "github/spacetelescope/stsdas_stripped",
-	"title": "github/spacetelescope/stsdas_stripped",
-	"url": " https://rseng.github.io/software/repository/github/spacetelescope/stsdas_stripped",
-	"content": "STSDAS/TABLES (nonfunctional / for reference only)"
+	"github/magnuspalmblad/addFeatures": {
+	"id": "github/magnuspalmblad/addFeatures",
+	"title": "github/magnuspalmblad/addFeatures",
+	"url": " https://rseng.github.io/software/repository/github/magnuspalmblad/addFeatures",
+	"content": "addFeatures adds spot images to a SCiLS Lab dataset from a list of defined mass spectral features"
 	},
-	"github/spacetelescope/synphot_refactor": {
-	"id": "github/spacetelescope/synphot_refactor",
-	"title": "github/spacetelescope/synphot_refactor",
-	"url": " https://rseng.github.io/software/repository/github/spacetelescope/synphot_refactor",
-	"content": "Synthetic photometry using Astropy"
+	"github/magnuspalmblad/averageRegions": {
+	"id": "github/magnuspalmblad/averageRegions",
+	"title": "github/magnuspalmblad/averageRegions",
+	"url": " https://rseng.github.io/software/repository/github/magnuspalmblad/averageRegions",
+	"content": "averageRegions averages the spectra in all or a defined subset of regions in a SCiLS Lab dataset and outputs this a Bruker-style .xy file."
 	},
-	"github/spacetelescope/astronify": {
-	"id": "github/spacetelescope/astronify",
-	"title": "github/spacetelescope/astronify",
-	"url": " https://rseng.github.io/software/repository/github/spacetelescope/astronify",
-	"content": "Astronomical data sonification."
+	"github/sonoUnoTeam/sonoUno-desktop": {
+	"id": "github/sonoUnoTeam/sonoUno-desktop",
+	"title": "github/sonoUnoTeam/sonoUno-desktop",
+	"url": " https://rseng.github.io/software/repository/github/sonoUnoTeam/sonoUno-desktop",
+	"content": "SonoUno is a sonification software for astronomical data presented on a table (txt or csv files). The software is being developed based on the study of other software, standards of accessibility like the ISO 9241-171:2008 (Guidance on software accessibility) and theoretical framework based on literature review and end user tests."
 	},
-	"github/spacetelescope/hst_cosmic_rays": {
-	"id": "github/spacetelescope/hst_cosmic_rays",
-	"title": "github/spacetelescope/hst_cosmic_rays",
-	"url": " https://rseng.github.io/software/repository/github/spacetelescope/hst_cosmic_rays",
+	"github/esperlman/JetCurry": {
+	"id": "github/esperlman/JetCurry",
+	"title": "github/esperlman/JetCurry",
+	"url": " https://rseng.github.io/software/repository/github/esperlman/JetCurry",
 	"content": "None"
 	},
-	"github/spacetelescope/exovetter": {
-	"id": "github/spacetelescope/exovetter",
-	"title": "github/spacetelescope/exovetter",
-	"url": " https://rseng.github.io/software/repository/github/spacetelescope/exovetter",
-	"content": "Exoplanet vetting"
-	},
-	"github/spacetelescope/imexam": {
-	"id": "github/spacetelescope/imexam",
-	"title": "github/spacetelescope/imexam",
-	"url": " https://rseng.github.io/software/repository/github/spacetelescope/imexam",
-	"content": "imexam is a python tool for simple image examination, and plotting, with similar functionality to IRAF&#39;s imexamine"
+	"github/lifs-tools/goslin": {
+	"id": "github/lifs-tools/goslin",
+	"title": "github/lifs-tools/goslin",
+	"url": " https://rseng.github.io/software/repository/github/lifs-tools/goslin",
+	"content": "Goslin is the Grammar on succinct lipid nomenclature."
 	},
-	"github/csuhjhjhj/GCNCMI": {
-	"id": "github/csuhjhjhj/GCNCMI",
-	"title": "github/csuhjhjhj/GCNCMI",
-	"url": " https://rseng.github.io/software/repository/github/csuhjhjhj/GCNCMI",
-	"content": "CircRNA-miRNA interaction Prediction Based on Graph Neural Network"
+	"github/lifs-tools/jmzTab-m": {
+	"id": "github/lifs-tools/jmzTab-m",
+	"title": "github/lifs-tools/jmzTab-m",
+	"url": " https://rseng.github.io/software/repository/github/lifs-tools/jmzTab-m",
+	"content": "Reference implementation for mzTab-M 2.0 for metabolomics"
 	},
-	"github/metaOmics/MetaPath": {
-	"id": "github/metaOmics/MetaPath",
-	"title": "github/metaOmics/MetaPath",
-	"url": " https://rseng.github.io/software/repository/github/metaOmics/MetaPath",
-	"content": "Meta analysis pathway enrichment"
+	"github/seqcode/allo": {
+	"id": "github/seqcode/allo",
+	"title": "github/seqcode/allo",
+	"url": " https://rseng.github.io/software/repository/github/seqcode/allo",
+	"content": "Allo: a multi-mapped read rescue strategy for peak based gene regulatory analyses"
 	},
-	"github/vortex-exoplanet/VIP": {
-	"id": "github/vortex-exoplanet/VIP",
-	"title": "github/vortex-exoplanet/VIP",
-	"url": " https://rseng.github.io/software/repository/github/vortex-exoplanet/VIP",
-	"content": "VIP is a python package/library for angular, reference star and spectral differential imaging for exoplanet/disk detection through high-contrast imaging."
+	"github/twosixlabs/magicwand-datatool": {
+	"id": "github/twosixlabs/magicwand-datatool",
+	"title": "github/twosixlabs/magicwand-datatool",
+	"url": " https://rseng.github.io/software/repository/github/twosixlabs/magicwand-datatool",
+	"content": "Magicwand tool to generate tcp traffic data"
 	},
-	"github/heatherprince/cosmoped": {
-	"id": "github/heatherprince/cosmoped",
-	"title": "github/heatherprince/cosmoped",
-	"url": " https://rseng.github.io/software/repository/github/heatherprince/cosmoped",
-	"content": "Compressed CMB likelihood code that uses the MOPED (Multiple/Massively Optimised Parameter Estimation and Data compression) compression scheme to compress the Planck power spectrum"
+	"github/Aarhus-Psychiatry-Research/timeseriesflattener": {
+	"id": "github/Aarhus-Psychiatry-Research/timeseriesflattener",
+	"title": "github/Aarhus-Psychiatry-Research/timeseriesflattener",
+	"url": " https://rseng.github.io/software/repository/github/Aarhus-Psychiatry-Research/timeseriesflattener",
+	"content": "A package for converting irregularly spaced time series, such as eletronic health records, into statically shaped dataframes. "
 	},
-	"github/CisnerosResearch/LICHEM": {
-	"id": "github/CisnerosResearch/LICHEM",
-	"title": "github/CisnerosResearch/LICHEM",
-	"url": " https://rseng.github.io/software/repository/github/CisnerosResearch/LICHEM",
-	"content": "This package is an open-source (GPLv3) interface between QM and MM software so that QM/MM calculations can be performed with polarizable and frozen electron density force fields. Functionality is also present for standard point-charge based force fields, pure MM, and pure QM calculations."
+	"github/kinnala/scikit-fem": {
+	"id": "github/kinnala/scikit-fem",
+	"title": "github/kinnala/scikit-fem",
+	"url": " https://rseng.github.io/software/repository/github/kinnala/scikit-fem",
+	"content": "Simple finite element assemblers for Python"
 	},
-	"github/cgrudz/DataAssimilationBenchmarks.jl": {
-	"id": "github/cgrudz/DataAssimilationBenchmarks.jl",
-	"title": "github/cgrudz/DataAssimilationBenchmarks.jl",
-	"url": " https://rseng.github.io/software/repository/github/cgrudz/DataAssimilationBenchmarks.jl",
-	"content": "Package Information and Documentation"
+	"github/HeracleBT/vEMstitch": {
+	"id": "github/HeracleBT/vEMstitch",
+	"title": "github/HeracleBT/vEMstitch",
+	"url": " https://rseng.github.io/software/repository/github/HeracleBT/vEMstitch",
+	"content": "None"
 	},
-	"github/parafields/parafields": {
-	"id": "github/parafields/parafields",
-	"title": "github/parafields/parafields",
-	"url": " https://rseng.github.io/software/repository/github/parafields/parafields",
-	"content": "Parallel Parameter Field Generator for Python"
+	"github/e-koch/FilFinder": {
+	"id": "github/e-koch/FilFinder",
+	"title": "github/e-koch/FilFinder",
+	"url": " https://rseng.github.io/software/repository/github/e-koch/FilFinder",
+	"content": "Detection of filamentary structure in molecular clouds"
 	},
-	"github/gt1/bambamc": {
-	"id": "github/gt1/bambamc",
-	"title": "github/gt1/bambamc",
-	"url": " https://rseng.github.io/software/repository/github/gt1/bambamc",
-	"content": "lightweight C implementation of name collating BAM file input and BAM file output "
+	"github/fAndreuzzi/BisPy": {
+	"id": "github/fAndreuzzi/BisPy",
+	"title": "github/fAndreuzzi/BisPy",
+	"url": " https://rseng.github.io/software/repository/github/fAndreuzzi/BisPy",
+	"content": "BisPy - A bisimulation library for Python."
 	},
-	"github/cupy/cupy": {
-	"id": "github/cupy/cupy",
-	"title": "github/cupy/cupy",
-	"url": " https://rseng.github.io/software/repository/github/cupy/cupy",
-	"content": "NumPy-like API accelerated with CUDA"
+	"github/Tomcxf/FASTdRNA": {
+	"id": "github/Tomcxf/FASTdRNA",
+	"title": "github/Tomcxf/FASTdRNA",
+	"url": " https://rseng.github.io/software/repository/github/Tomcxf/FASTdRNA",
+	"content": "FASTdRNA is a workflow for analysis of ONT direct RNA seq dataset"
 	},
-	"github/julie-forman-kay-lab/SPyCi-PDB": {
-	"id": "github/julie-forman-kay-lab/SPyCi-PDB",
-	"title": "github/julie-forman-kay-lab/SPyCi-PDB",
-	"url": " https://rseng.github.io/software/repository/github/julie-forman-kay-lab/SPyCi-PDB",
-	"content": "Structural Python (Back) Calculator Interface for PDBs"
+	"github/candYgene/QTM": {
+	"id": "github/candYgene/QTM",
+	"title": "github/candYgene/QTM",
+	"url": " https://rseng.github.io/software/repository/github/candYgene/QTM",
+	"content": "QTLTableMiner++ tool for mining tables in scientific articles"
 	},
-	"github/ArisTr/PyRaTE": {
-	"id": "github/ArisTr/PyRaTE",
-	"title": "github/ArisTr/PyRaTE",
-	"url": " https://rseng.github.io/software/repository/github/ArisTr/PyRaTE",
-	"content": "Python Radiative Transfer Emission Code"
+	"github/candYgene/pbg-ld": {
+	"id": "github/candYgene/pbg-ld",
+	"title": "github/candYgene/pbg-ld",
+	"url": " https://rseng.github.io/software/repository/github/candYgene/pbg-ld",
+	"content": "Linked Data Platform for Plant Breeding &amp; Genomics"
 	},
-	"github/lgbouma/gyro-interp": {
-	"id": "github/lgbouma/gyro-interp",
-	"title": "github/lgbouma/gyro-interp",
-	"url": " https://rseng.github.io/software/repository/github/lgbouma/gyro-interp",
-	"content": "Gyrochronology via interpolation of open cluster rotation sequences."
+	"github/candYgene/siga": {
+	"id": "github/candYgene/siga",
+	"title": "github/candYgene/siga",
+	"url": " https://rseng.github.io/software/repository/github/candYgene/siga",
+	"content": "Semantically Interoperable Genome Annotations"
 	},
-	"github/MaudeDavidLab/GMEmbeddings": {
-	"id": "github/MaudeDavidLab/GMEmbeddings",
-	"title": "github/MaudeDavidLab/GMEmbeddings",
-	"url": " https://rseng.github.io/software/repository/github/MaudeDavidLab/GMEmbeddings",
-	"content": "None"
+	"github/candYgene/abg-ld": {
+	"id": "github/candYgene/abg-ld",
+	"title": "github/candYgene/abg-ld",
+	"url": " https://rseng.github.io/software/repository/github/candYgene/abg-ld",
+	"content": "Linked Data Platform for Animal Breeding &amp; Genomics"
 	},
-	"github/Mat-dp/mat-dp-core": {
-	"id": "github/Mat-dp/mat-dp-core",
-	"title": "github/Mat-dp/mat-dp-core",
-	"url": " https://rseng.github.io/software/repository/github/Mat-dp/mat-dp-core",
-	"content": "Mat-dp core cotains the key methods used in the broader Mat-dp model. Mat-dp aims to deliver user-friendly and open-access software to study the environmental implications of materials used for building low-carbon systems."
+	"github/TomKellyGenetics/graphsim": {
+	"id": "github/TomKellyGenetics/graphsim",
+	"title": "github/TomKellyGenetics/graphsim",
+	"url": " https://rseng.github.io/software/repository/github/TomKellyGenetics/graphsim",
+	"content": "R package: Simulate Expression data from igraph network using mvtnorm (multivariate normal)."
 	},
-	"github/LukeDuttweiler/skipTrack": {
-	"id": "github/LukeDuttweiler/skipTrack",
-	"title": "github/LukeDuttweiler/skipTrack",
-	"url": " https://rseng.github.io/software/repository/github/LukeDuttweiler/skipTrack",
-	"content": "Bayesian Hierarchical Models for Identifying Non-Adherence in Mobile Menstrual Cycle Tracking"
+	"github/msyazwanfaid/Authentication-Algorithm-for-New-Moon-Visibility-Report": {
+	"id": "github/msyazwanfaid/Authentication-Algorithm-for-New-Moon-Visibility-Report",
+	"title": "github/msyazwanfaid/Authentication-Algorithm-for-New-Moon-Visibility-Report",
+	"url": " https://rseng.github.io/software/repository/github/msyazwanfaid/Authentication-Algorithm-for-New-Moon-Visibility-Report",
+	"content": "Authentication Algorithm for New Moon Visibility Report"
 	},
-	"github/rodoulak/Desalination-and-Brine-Treatment-Simulation-": {
-	"id": "github/rodoulak/Desalination-and-Brine-Treatment-Simulation-",
-	"title": "github/rodoulak/Desalination-and-Brine-Treatment-Simulation-",
-	"url": " https://rseng.github.io/software/repository/github/rodoulak/Desalination-and-Brine-Treatment-Simulation-",
-	"content": "Techno-economic models for desalination and brine treatment technologies"
+	"github/msyazwanfaid/hilalpy": {
+	"id": "github/msyazwanfaid/hilalpy",
+	"title": "github/msyazwanfaid/hilalpy",
+	"url": " https://rseng.github.io/software/repository/github/msyazwanfaid/hilalpy",
+	"content": "A package to analyse the data of Moon sighting for lunar crescent visibility criterion"
 	},
-	"github/STAR-Fusion/STAR-Fusion": {
-	"id": "github/STAR-Fusion/STAR-Fusion",
-	"title": "github/STAR-Fusion/STAR-Fusion",
-	"url": " https://rseng.github.io/software/repository/github/STAR-Fusion/STAR-Fusion",
-	"content": "STAR-Fusion codebase"
+	"github/hendr1km/dropout": {
+	"id": "github/hendr1km/dropout",
+	"title": "github/hendr1km/dropout",
+	"url": " https://rseng.github.io/software/repository/github/hendr1km/dropout",
+	"content": "tools for dropout analysis when working with survey data"
 	},
-	"github/ggmichael/craterstats": {
-	"id": "github/ggmichael/craterstats",
-	"title": "github/ggmichael/craterstats",
-	"url": " https://rseng.github.io/software/repository/github/ggmichael/craterstats",
-	"content": "Craterstats - a tool to analyse and plot crater count data for planetary surface dating"
+	"github/C2SM-RCM/emiproc": {
+	"id": "github/C2SM-RCM/emiproc",
+	"title": "github/C2SM-RCM/emiproc",
+	"url": " https://rseng.github.io/software/repository/github/C2SM-RCM/emiproc",
+	"content": "Preprocessing of emissions: from any inventory to any model"
 	},
-	"github/Biomedical-Imaging-Group/Steer-n-Detect": {
-	"id": "github/Biomedical-Imaging-Group/Steer-n-Detect",
-	"title": "github/Biomedical-Imaging-Group/Steer-n-Detect",
-	"url": " https://rseng.github.io/software/repository/github/Biomedical-Imaging-Group/Steer-n-Detect",
-	"content": "ImageJ plugin - Steerable Template Detector"
+	"github/supernnova/SuperNNova": {
+	"id": "github/supernnova/SuperNNova",
+	"title": "github/supernnova/SuperNNova",
+	"url": " https://rseng.github.io/software/repository/github/supernnova/SuperNNova",
+	"content": "Open Source Photometric classification https://supernnova.readthedocs.io"
 	},
-	"github/IftachSadeh/ANNZ": {
-	"id": "github/IftachSadeh/ANNZ",
-	"title": "github/IftachSadeh/ANNZ",
-	"url": " https://rseng.github.io/software/repository/github/IftachSadeh/ANNZ",
-	"content": "Machine learning methods for astrophysics (photometric redshift and PDF estimation, star/galaxy classification etc.)"
+	"github/ladsantos/p-winds": {
+	"id": "github/ladsantos/p-winds",
+	"title": "github/ladsantos/p-winds",
+	"url": " https://rseng.github.io/software/repository/github/ladsantos/p-winds",
+	"content": "Python implementation of Parker wind models for exoplanet atmospheres"
 	},
-	"github/NuSpaceSim/nupyprop": {
-	"id": "github/NuSpaceSim/nupyprop",
-	"title": "github/NuSpaceSim/nupyprop",
-	"url": " https://rseng.github.io/software/repository/github/NuSpaceSim/nupyprop",
-	"content": "None"
+	"github/ladsantos/flatstar": {
+	"id": "github/ladsantos/flatstar",
+	"title": "github/ladsantos/flatstar",
+	"url": " https://rseng.github.io/software/repository/github/ladsantos/flatstar",
+	"content": "Make 2d intensity maps of limb-darkened stars."
 	},
-	"github/hyperopt/hyperopt": {
-	"id": "github/hyperopt/hyperopt",
-	"title": "github/hyperopt/hyperopt",
-	"url": " https://rseng.github.io/software/repository/github/hyperopt/hyperopt",
-	"content": "Distributed Asynchronous Hyperparameter Optimization in Python"
+	"github/BobChallen/Basic-mzml-plotter": {
+	"id": "github/BobChallen/Basic-mzml-plotter",
+	"title": "github/BobChallen/Basic-mzml-plotter",
+	"url": " https://rseng.github.io/software/repository/github/BobChallen/Basic-mzml-plotter",
+	"content": "A very basic mzml file plotting program that can plot single scans, merge all scans from a file, plot the TIC, and plot an EIC of a chosen m/z value."
 	},
-	"github/geospace-code/h5fortran": {
-	"id": "github/geospace-code/h5fortran",
-	"title": "github/geospace-code/h5fortran",
-	"url": " https://rseng.github.io/software/repository/github/geospace-code/h5fortran",
-	"content": "Lightweight HDF5 polymorphic Fortran: h5write() h5read()"
+	"github/aakepley/autobox": {
+	"id": "github/aakepley/autobox",
+	"title": "github/aakepley/autobox",
+	"url": " https://rseng.github.io/software/repository/github/aakepley/autobox",
+	"content": "Prototype of an autoboxing routine for tclean"
 	},
-	"github/dcorre/otrain": {
-	"id": "github/dcorre/otrain",
-	"title": "github/dcorre/otrain",
-	"url": " https://rseng.github.io/software/repository/github/dcorre/otrain",
-	"content": "None"
+	"github/jmhuie/Slicer-SegmentGeometry": {
+	"id": "github/jmhuie/Slicer-SegmentGeometry",
+	"title": "github/jmhuie/Slicer-SegmentGeometry",
+	"url": " https://rseng.github.io/software/repository/github/jmhuie/Slicer-SegmentGeometry",
+	"content": "Extension to calculate second moment of area and other cross-sectional properties in 3D Slicer"
 	},
-	"github/babelomics/impuSARS": {
-	"id": "github/babelomics/impuSARS",
-	"title": "github/babelomics/impuSARS",
-	"url": " https://rseng.github.io/software/repository/github/babelomics/impuSARS",
-	"content": "Software tool for the imputation of whole-genome SARS-CoV-2 sequences."
+	"github/CEED/libCEED": {
+	"id": "github/CEED/libCEED",
+	"title": "github/CEED/libCEED",
+	"url": " https://rseng.github.io/software/repository/github/CEED/libCEED",
+	"content": "CEED Library: Code for Efficient Extensible Discretizations"
 	},
-	"github/chemfiles/chemfiles": {
-	"id": "github/chemfiles/chemfiles",
-	"title": "github/chemfiles/chemfiles",
-	"url": " https://rseng.github.io/software/repository/github/chemfiles/chemfiles",
-	"content": "Library for reading and writing chemistry files"
+	"github/fcastagna/JoXSZ": {
+	"id": "github/fcastagna/JoXSZ",
+	"title": "github/fcastagna/JoXSZ",
+	"url": " https://rseng.github.io/software/repository/github/fcastagna/JoXSZ",
+	"content": "Joint X-ray and SZ data fitting code for galaxy clusters in Python"
 	},
-	"github/amromics/panta": {
-	"id": "github/amromics/panta",
-	"title": "github/amromics/panta",
-	"url": " https://rseng.github.io/software/repository/github/amromics/panta",
-	"content": "Pan-genome Analysis"
+	"github/fcastagna/preprofit": {
+	"id": "github/fcastagna/preprofit",
+	"title": "github/fcastagna/preprofit",
+	"url": " https://rseng.github.io/software/repository/github/fcastagna/preprofit",
+	"content": "Pressure Profile Fitter for galaxy clusters in Python"
 	},
-	"github/kostergroup/SIMsalabim": {
-	"id": "github/kostergroup/SIMsalabim",
-	"title": "github/kostergroup/SIMsalabim",
-	"url": " https://rseng.github.io/software/repository/github/kostergroup/SIMsalabim",
-	"content": "A 1D drift-diffusion simulator for semiconductor devices (LEDs, solar cells, diodes, organics, perovskites)"
+	"github/fair-workflows/fairworkflows": {
+	"id": "github/fair-workflows/fairworkflows",
+	"title": "github/fair-workflows/fairworkflows",
+	"url": " https://rseng.github.io/software/repository/github/fair-workflows/fairworkflows",
+	"content": "A python library for constructing, modifying and publishing scientific workflows described using semantic technologies."
 	},
-	"github/csabiu/kstat": {
-	"id": "github/csabiu/kstat",
-	"title": "github/csabiu/kstat",
-	"url": " https://rseng.github.io/software/repository/github/csabiu/kstat",
-	"content": "Fast KD-tree MPI correlation statistics package - Author: Cristiano Sabiu"
+	"github/fair-workflows/NanopubJL": {
+	"id": "github/fair-workflows/NanopubJL",
+	"title": "github/fair-workflows/NanopubJL",
+	"url": " https://rseng.github.io/software/repository/github/fair-workflows/NanopubJL",
+	"content": "JupyterLab extension to aid in searching and publishing of Nanopublications in a python notebook"
 	},
-	"github/jdcphysics/validation": {
-	"id": "github/jdcphysics/validation",
-	"title": "github/jdcphysics/validation",
-	"url": " https://rseng.github.io/software/repository/github/jdcphysics/validation",
-	"content": "codes to compare simulation data to various observations"
+	"github/fair-workflows/nanopub": {
+	"id": "github/fair-workflows/nanopub",
+	"title": "github/fair-workflows/nanopub",
+	"url": " https://rseng.github.io/software/repository/github/fair-workflows/nanopub",
+	"content": "Python client for searching, publishing and modifying nanopublications."
 	},
-	"github/JacksonBurns/astartes": {
-	"id": "github/JacksonBurns/astartes",
-	"title": "github/JacksonBurns/astartes",
-	"url": " https://rseng.github.io/software/repository/github/JacksonBurns/astartes",
-	"content": "Better Data Splits for Machine Learning"
+	"github/tobias-dv-lnu/s4rdm3x": {
+	"id": "github/tobias-dv-lnu/s4rdm3x",
+	"title": "github/tobias-dv-lnu/s4rdm3x",
+	"url": " https://rseng.github.io/software/repository/github/tobias-dv-lnu/s4rdm3x",
+	"content": "None"
 	},
-	"github/myrafproject/myrafproject": {
-	"id": "github/myrafproject/myrafproject",
-	"title": "github/myrafproject/myrafproject",
-	"url": " https://rseng.github.io/software/repository/github/myrafproject/myrafproject",
-	"content": "An Easy GUI for IRAF Photometry: MYRaf Project 3.0! "
+	"github/gromacs/gromacs": {
+	"id": "github/gromacs/gromacs",
+	"title": "github/gromacs/gromacs",
+	"url": " https://rseng.github.io/software/repository/github/gromacs/gromacs",
+	"content": "Public/backup repository of the GROMACS molecular simulation toolkit. Please do not mine the metadata blindly; we use https://gitlab.com/gromacs/gromacs for code review and issue tracking."
 	},
-	"github/coder/code-server": {
-	"id": "github/coder/code-server",
-	"title": "github/coder/code-server",
-	"url": " https://rseng.github.io/software/repository/github/coder/code-server",
-	"content": "VS Code in the browser"
+	"github/theosanderson/chronumental": {
+	"id": "github/theosanderson/chronumental",
+	"title": "github/theosanderson/chronumental",
+	"url": " https://rseng.github.io/software/repository/github/theosanderson/chronumental",
+	"content": "Estimating time trees from very large phylogenies"
 	},
-	"github/ylxu05/HN-PPISP": {
-	"id": "github/ylxu05/HN-PPISP",
-	"title": "github/ylxu05/HN-PPISP",
-	"url": " https://rseng.github.io/software/repository/github/ylxu05/HN-PPISP",
-	"content": "None"
+	"github/jeertmans/DiffeRT2d": {
+	"id": "github/jeertmans/DiffeRT2d",
+	"title": "github/jeertmans/DiffeRT2d",
+	"url": " https://rseng.github.io/software/repository/github/jeertmans/DiffeRT2d",
+	"content": "2D Toolbox for Differentiable Ray Tracing"
 	},
-	"github/sunpy/sunpy": {
-	"id": "github/sunpy/sunpy",
-	"title": "github/sunpy/sunpy",
-	"url": " https://rseng.github.io/software/repository/github/sunpy/sunpy",
-	"content": "SunPy - Python for Solar Physics"
+	"github/lyalpha/pympc": {
+	"id": "github/lyalpha/pympc",
+	"title": "github/lyalpha/pympc",
+	"url": " https://rseng.github.io/software/repository/github/lyalpha/pympc",
+	"content": "minor planet checking"
 	},
-	"github/sunpy/ndcube": {
-	"id": "github/sunpy/ndcube",
-	"title": "github/sunpy/ndcube",
-	"url": " https://rseng.github.io/software/repository/github/sunpy/ndcube",
-	"content": "A base package for multi-dimensional contiguous and non-contiguous coordinate-aware arrays. Maintainers: @danryanirish &amp; @Cadair"
+	"github/algolab/shark": {
+	"id": "github/algolab/shark",
+	"title": "github/algolab/shark",
+	"url": " https://rseng.github.io/software/repository/github/algolab/shark",
+	"content": "Mapping-free software for fishing relevant reads in an RNA-Seq sample"
 	},
-	"github/mazzalab/pyntacle": {
-	"id": "github/mazzalab/pyntacle",
-	"title": "github/mazzalab/pyntacle",
-	"url": " https://rseng.github.io/software/repository/github/mazzalab/pyntacle",
-	"content": "A high performance python package for network analysis based on non canonical metrics"
+	"github/JuliaDiff/ForwardDiff.jl": {
+	"id": "github/JuliaDiff/ForwardDiff.jl",
+	"title": "github/JuliaDiff/ForwardDiff.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaDiff/ForwardDiff.jl",
+	"content": "Forward Mode Automatic Differentiation for Julia"
 	},
-	"github/RabadanLab/arcasHLA": {
-	"id": "github/RabadanLab/arcasHLA",
-	"title": "github/RabadanLab/arcasHLA",
-	"url": " https://rseng.github.io/software/repository/github/RabadanLab/arcasHLA",
-	"content": "Fast and accurate in silico inference of HLA genotypes from RNA-seq"
+	"github/JuliaDiff/ReverseDiff.jl": {
+	"id": "github/JuliaDiff/ReverseDiff.jl",
+	"title": "github/JuliaDiff/ReverseDiff.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaDiff/ReverseDiff.jl",
+	"content": "Reverse Mode Automatic Differentiation for Julia"
 	},
-	"github/jbuisine/macop": {
-	"id": "github/jbuisine/macop",
-	"title": "github/jbuisine/macop",
-	"url": " https://rseng.github.io/software/repository/github/jbuisine/macop",
-	"content": "Minimalist And Customisable Optimisation python Package"
+	"github/spglib/spgrep": {
+	"id": "github/spglib/spgrep",
+	"title": "github/spglib/spgrep",
+	"url": " https://rseng.github.io/software/repository/github/spglib/spgrep",
+	"content": "On-the-fly generator of space-group irreducible representations"
 	},
-	"github/glasgowlab/MAGPIE": {
-	"id": "github/glasgowlab/MAGPIE",
-	"title": "github/glasgowlab/MAGPIE",
-	"url": " https://rseng.github.io/software/repository/github/glasgowlab/MAGPIE",
-	"content": "MAGPIE"
+	"github/LTLA/gesel.js": {
+	"id": "github/LTLA/gesel.js",
+	"title": "github/LTLA/gesel.js",
+	"url": " https://rseng.github.io/software/repository/github/LTLA/gesel.js",
+	"content": "Client-side gene set queries."
 	},
-	"github/rossjturner/RAiSERed": {
-	"id": "github/rossjturner/RAiSERed",
-	"title": "github/rossjturner/RAiSERed",
-	"url": " https://rseng.github.io/software/repository/github/rossjturner/RAiSERed",
-	"content": "None"
+	"github/LTLA/basilisk": {
+	"id": "github/LTLA/basilisk",
+	"title": "github/LTLA/basilisk",
+	"url": " https://rseng.github.io/software/repository/github/LTLA/basilisk",
+	"content": "Clone of the Bioconductor repository for the basilisk package."
 	},
-	"github/ihrke/pypillometry": {
-	"id": "github/ihrke/pypillometry",
-	"title": "github/ihrke/pypillometry",
-	"url": " https://rseng.github.io/software/repository/github/ihrke/pypillometry",
-	"content": "pupillometry with python"
+	"github/galaxy001/pirs": {
+	"id": "github/galaxy001/pirs",
+	"title": "github/galaxy001/pirs",
+	"url": " https://rseng.github.io/software/repository/github/galaxy001/pirs",
+	"content": "profile basd Illumina pair-end Reads Simulator"
 	},
-	"github/Sm00thix/IKPLS": {
-	"id": "github/Sm00thix/IKPLS",
-	"title": "github/Sm00thix/IKPLS",
-	"url": " https://rseng.github.io/software/repository/github/Sm00thix/IKPLS",
-	"content": "Fast CPU and GPU Python implementations of Improved Kernel PLS by Dayal and MacGregor (1997) and Shortcutting Cross-Validation by Engstrøm (2024)."
+	"github/ebachelet/pyLIMA": {
+	"id": "github/ebachelet/pyLIMA",
+	"title": "github/ebachelet/pyLIMA",
+	"url": " https://rseng.github.io/software/repository/github/ebachelet/pyLIMA",
+	"content": "None"
 	},
-	"github/hugoledoux/startinpy": {
-	"id": "github/hugoledoux/startinpy",
-	"title": "github/hugoledoux/startinpy",
-	"url": " https://rseng.github.io/software/repository/github/hugoledoux/startinpy",
-	"content": "A Python library for modelling and processing 2.5D terrains using a (2D) Delaunay triangulation."
+	"github/RasmussenLab/vamb": {
+	"id": "github/RasmussenLab/vamb",
+	"title": "github/RasmussenLab/vamb",
+	"url": " https://rseng.github.io/software/repository/github/RasmussenLab/vamb",
+	"content": "Variational autoencoder for metagenomic binning"
 	},
-	"github/SolavLab/DuoDIC": {
-	"id": "github/SolavLab/DuoDIC",
-	"title": "github/SolavLab/DuoDIC",
-	"url": " https://rseng.github.io/software/repository/github/SolavLab/DuoDIC",
-	"content": "Stereo 3D Digital Image Correlation (3D-DIC) MATLAB toolbox"
+	"github/nathanaelbosch/ProbNumDiffEq.jl": {
+	"id": "github/nathanaelbosch/ProbNumDiffEq.jl",
+	"title": "github/nathanaelbosch/ProbNumDiffEq.jl",
+	"url": " https://rseng.github.io/software/repository/github/nathanaelbosch/ProbNumDiffEq.jl",
+	"content": "Probabilistic Numerical Differential Equation solvers via Bayesian filtering and smoothing"
 	},
-	"github/markblokpoel/mathlib": {
-	"id": "github/markblokpoel/mathlib",
-	"title": "github/markblokpoel/mathlib",
-	"url": " https://rseng.github.io/software/repository/github/markblokpoel/mathlib",
-	"content": "None"
+	"github/SterlingYM/astroPIPS": {
+	"id": "github/SterlingYM/astroPIPS",
+	"title": "github/SterlingYM/astroPIPS",
+	"url": " https://rseng.github.io/software/repository/github/SterlingYM/astroPIPS",
+	"content": "A set of tools for photometric analysis. Determines the period of short-period variable stars."
 	},
-	"github/johentsch/ms3": {
-	"id": "github/johentsch/ms3",
-	"title": "github/johentsch/ms3",
-	"url": " https://rseng.github.io/software/repository/github/johentsch/ms3",
-	"content": "A parser for annotated MuseScore 3 files."
+	"github/raphael-group/hatchet": {
+	"id": "github/raphael-group/hatchet",
+	"title": "github/raphael-group/hatchet",
+	"url": " https://rseng.github.io/software/repository/github/raphael-group/hatchet",
+	"content": "HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, and that leverages the relationships between clones in these samples."
 	},
-	"github/hansenjohnson/WhaleMap": {
-	"id": "github/hansenjohnson/WhaleMap",
-	"title": "github/hansenjohnson/WhaleMap",
-	"url": " https://rseng.github.io/software/repository/github/hansenjohnson/WhaleMap",
-	"content": "Collate and visualize whale survey results in the NW Atlantic"
+	"github/JinxinMonash/PhageGE": {
+	"id": "github/JinxinMonash/PhageGE",
+	"title": "github/JinxinMonash/PhageGE",
+	"url": " https://rseng.github.io/software/repository/github/JinxinMonash/PhageGE",
+	"content": "Phage Genome Exploration"
 	},
-	"github/MichielCottaar/velbin": {
-	"id": "github/MichielCottaar/velbin",
-	"title": "github/MichielCottaar/velbin",
-	"url": " https://rseng.github.io/software/repository/github/MichielCottaar/velbin",
-	"content": "No relation to the Russian village"
+	"github/mosdef-hub/mbuild": {
+	"id": "github/mosdef-hub/mbuild",
+	"title": "github/mosdef-hub/mbuild",
+	"url": " https://rseng.github.io/software/repository/github/mosdef-hub/mbuild",
+	"content": "A hierarchical, component based molecule builder"
 	},
-	"github/sylabs/singularity": {
-	"id": "github/sylabs/singularity",
-	"title": "github/sylabs/singularity",
-	"url": " https://rseng.github.io/software/repository/github/sylabs/singularity",
-	"content": "SingularityCE is the Community Edition of Singularity, an open source container platform designed to be simple, fast, and secure."
+	"github/mosdef-hub/foyer": {
+	"id": "github/mosdef-hub/foyer",
+	"title": "github/mosdef-hub/foyer",
+	"url": " https://rseng.github.io/software/repository/github/mosdef-hub/foyer",
+	"content": "A package for atom-typing as well as applying and disseminating forcefields"
 	},
-	"github/eaobservatory/jcmt_coadd": {
-	"id": "github/eaobservatory/jcmt_coadd",
-	"title": "github/eaobservatory/jcmt_coadd",
-	"url": " https://rseng.github.io/software/repository/github/eaobservatory/jcmt_coadd",
-	"content": "UKT14 photometry data reduction tool"
+	"github/CM2S/piglot": {
+	"id": "github/CM2S/piglot",
+	"title": "github/CM2S/piglot",
+	"url": " https://rseng.github.io/software/repository/github/CM2S/piglot",
+	"content": "A package for the optimisation of numerical responses"
 	},
-	"github/dentalfloss1/transients-simulations": {
-	"id": "github/dentalfloss1/transients-simulations",
-	"title": "github/dentalfloss1/transients-simulations",
-	"url": " https://rseng.github.io/software/repository/github/dentalfloss1/transients-simulations",
+	"github/fakedrtom/oncogemini": {
+	"id": "github/fakedrtom/oncogemini",
+	"title": "github/fakedrtom/oncogemini",
+	"url": " https://rseng.github.io/software/repository/github/fakedrtom/oncogemini",
 	"content": "None"
 	},
-	"github/indrops/indrops": {
-	"id": "github/indrops/indrops",
-	"title": "github/indrops/indrops",
-	"url": " https://rseng.github.io/software/repository/github/indrops/indrops",
-	"content": "Pipeline for processing inDrops sequencing data"
+	"github/Samreay/Marz": {
+	"id": "github/Samreay/Marz",
+	"title": "github/Samreay/Marz",
+	"url": " https://rseng.github.io/software/repository/github/Samreay/Marz",
+	"content": "The Marz redshifting program is intended for use in cosmology surveys, specifically for the OzDES team."
 	},
-	"github/FAU-LAP/NOMAD-CAMELS": {
-	"id": "github/FAU-LAP/NOMAD-CAMELS",
-	"title": "github/FAU-LAP/NOMAD-CAMELS",
-	"url": " https://rseng.github.io/software/repository/github/FAU-LAP/NOMAD-CAMELS",
-	"content": "We are developing a configurable measurement software (CAMELS), targeted towards the requirements of experimental solid-state physics. Here many experiments utilize a multitude of measurement devices used in dynamically changing setups."
+	"github/Samreay/ChainConsumer": {
+	"id": "github/Samreay/ChainConsumer",
+	"title": "github/Samreay/ChainConsumer",
+	"url": " https://rseng.github.io/software/repository/github/Samreay/ChainConsumer",
+	"content": "Corner plots, LaTeX tables and plotting walks."
 	},
-	"github/swiss-seismological-service/DUGseis": {
-	"id": "github/swiss-seismological-service/DUGseis",
-	"title": "github/swiss-seismological-service/DUGseis",
-	"url": " https://rseng.github.io/software/repository/github/swiss-seismological-service/DUGseis",
-	"content": "Software for acquisition and processing of micro-seismic data"
+	"github/Samreay/Barry": {
+	"id": "github/Samreay/Barry",
+	"title": "github/Samreay/Barry",
+	"url": " https://rseng.github.io/software/repository/github/Samreay/Barry",
+	"content": "BAO Model Fitting Made Easy"
 	},
-	"github/scottgigante/picopore": {
-	"id": "github/scottgigante/picopore",
-	"title": "github/scottgigante/picopore",
-	"url": " https://rseng.github.io/software/repository/github/scottgigante/picopore",
-	"content": "A tool to reduce the size of Oxford Nanopore Technologies&#39; datasets without losing information"
+	"github/takfung/ResDisMapper": {
+	"id": "github/takfung/ResDisMapper",
+	"title": "github/takfung/ResDisMapper",
+	"url": " https://rseng.github.io/software/repository/github/takfung/ResDisMapper",
+	"content": "None"
 	},
-	"github/ejmackrell/tidyproteomics-interactive": {
-	"id": "github/ejmackrell/tidyproteomics-interactive",
-	"title": "github/ejmackrell/tidyproteomics-interactive",
-	"url": " https://rseng.github.io/software/repository/github/ejmackrell/tidyproteomics-interactive",
-	"content": "Interactive Shiny application for tidyproteomics"
+	"github/DrafProject/elmada": {
+	"id": "github/DrafProject/elmada",
+	"title": "github/DrafProject/elmada",
+	"url": " https://rseng.github.io/software/repository/github/DrafProject/elmada",
+	"content": "elmada: Dynamic electricity carbon emission factors and prices for Europe"
 	},
-	"github/Hoecker-Lab/atligator": {
-	"id": "github/Hoecker-Lab/atligator",
-	"title": "github/Hoecker-Lab/atligator",
-	"url": " https://rseng.github.io/software/repository/github/Hoecker-Lab/atligator",
-	"content": "Analysis and design of protein-protein or protein-peptide interactions based on atlas database."
+	"github/catherinezucker/radfil": {
+	"id": "github/catherinezucker/radfil",
+	"title": "github/catherinezucker/radfil",
+	"url": " https://rseng.github.io/software/repository/github/catherinezucker/radfil",
+	"content": "Building Radial Density Profiles for Interstellar Filaments"
 	},
-	"github/astrobrent/itera": {
-	"id": "github/astrobrent/itera",
-	"title": "github/astrobrent/itera",
-	"url": " https://rseng.github.io/software/repository/github/astrobrent/itera",
-	"content": "ITERA: IDL line ratio tool"
+	"github/adbar/htmldate": {
+	"id": "github/adbar/htmldate",
+	"title": "github/adbar/htmldate",
+	"url": " https://rseng.github.io/software/repository/github/adbar/htmldate",
+	"content": "Fast and robust date extraction from web pages, from the command-line or within Python"
 	},
-	"github/astrobrent/mappings": {
-	"id": "github/astrobrent/mappings",
-	"title": "github/astrobrent/mappings",
-	"url": " https://rseng.github.io/software/repository/github/astrobrent/mappings",
-	"content": "MAPPINGSIII repository"
+	"github/mzemp/halogen": {
+	"id": "github/mzemp/halogen",
+	"title": "github/mzemp/halogen",
+	"url": " https://rseng.github.io/software/repository/github/mzemp/halogen",
+	"content": "Tool to generate spherically symmetric initial conditions for N-body simulations."
 	},
-	"github/ebmonson/2DFFTUtils-Module": {
-	"id": "github/ebmonson/2DFFTUtils-Module",
-	"title": "github/ebmonson/2DFFTUtils-Module",
-	"url": " https://rseng.github.io/software/repository/github/ebmonson/2DFFTUtils-Module",
-	"content": "A Python module implementation of some tasks associated with measuring spiral galaxy pitch angle with 2DFFT. To be merged into the 2dfft_utils repository at a later date. TODO: Rename package and repository to SpiralUtils."
+	"github/kavonrtep/dante": {
+	"id": "github/kavonrtep/dante",
+	"title": "github/kavonrtep/dante",
+	"url": " https://rseng.github.io/software/repository/github/kavonrtep/dante",
+	"content": "Domain based annotation of transposable elements "
 	},
-	"github/PaulMcMillan-Astro/GalPot": {
-	"id": "github/PaulMcMillan-Astro/GalPot",
-	"title": "github/PaulMcMillan-Astro/GalPot",
-	"url": " https://rseng.github.io/software/repository/github/PaulMcMillan-Astro/GalPot",
-	"content": "A stand-alone version of Dehnen&#39;s GalaxyPotential code."
+	"github/SYalouz/QuantNBody": {
+	"id": "github/SYalouz/QuantNBody",
+	"title": "github/SYalouz/QuantNBody",
+	"url": " https://rseng.github.io/software/repository/github/SYalouz/QuantNBody",
+	"content": "QuantNBody : a python package for quantum chemistry/physics to manipulate many-body operators and wave functions."
 	},
-	"github/PaulMcMillan-Astro/Torus": {
-	"id": "github/PaulMcMillan-Astro/Torus",
-	"title": "github/PaulMcMillan-Astro/Torus",
-	"url": " https://rseng.github.io/software/repository/github/PaulMcMillan-Astro/Torus",
-	"content": "Torus Code"
+	"github/rcarragh/c212": {
+	"id": "github/rcarragh/c212",
+	"title": "github/rcarragh/c212",
+	"url": " https://rseng.github.io/software/repository/github/rcarragh/c212",
+	"content": "Methods for detecting safety signals in clinical trials using groupings of adverse events by body-system or system organ class."
 	},
-	"github/EMBL-Hentze-group/htseq-clip": {
-	"id": "github/EMBL-Hentze-group/htseq-clip",
-	"title": "github/EMBL-Hentze-group/htseq-clip",
-	"url": " https://rseng.github.io/software/repository/github/EMBL-Hentze-group/htseq-clip",
-	"content": "a toolset designed for the processing and analysis of eCLIP/iCLIP dataset"
+	"github/alejandroaviles/fkpt": {
+	"id": "github/alejandroaviles/fkpt",
+	"title": "github/alejandroaviles/fkpt",
+	"url": " https://rseng.github.io/software/repository/github/alejandroaviles/fkpt",
+	"content": "Perturbation theory with &#34;fk&#34;-Kernels"
 	},
-	"github/tony-travis/PIQUE": {
-	"id": "github/tony-travis/PIQUE",
-	"title": "github/tony-travis/PIQUE",
-	"url": " https://rseng.github.io/software/repository/github/tony-travis/PIQUE",
-	"content": "Parallel Identification of QTL&#39;s Using EMMAX"
+	"github/esoPanda/FTbg": {
+	"id": "github/esoPanda/FTbg",
+	"title": "github/esoPanda/FTbg",
+	"url": " https://rseng.github.io/software/repository/github/esoPanda/FTbg",
+	"content": "Background removal using Fourier Transform"
 	},
-	"github/subisarkar/JexoSim": {
-	"id": "github/subisarkar/JexoSim",
-	"title": "github/subisarkar/JexoSim",
-	"url": " https://rseng.github.io/software/repository/github/subisarkar/JexoSim",
-	"content": "JexoSim (JWST Exoplanet Observation Simulator) 2.0, is a time-domain simulator of JWST exoplanet transit observations."
+	"github/caseyjlaw/rtpipe": {
+	"id": "github/caseyjlaw/rtpipe",
+	"title": "github/caseyjlaw/rtpipe",
+	"url": " https://rseng.github.io/software/repository/github/caseyjlaw/rtpipe",
+	"content": "Pipeline for real-time fast transient detection in radio interferometric data (see also https://github.com/realfastvla/rfpipe)"
 	},
-	"github/ywx649999311/EzTao": {
-	"id": "github/ywx649999311/EzTao",
-	"title": "github/ywx649999311/EzTao",
-	"url": " https://rseng.github.io/software/repository/github/ywx649999311/EzTao",
-	"content": "A Python Toolkit for AGN Time Series Analysis using CARMA models"
+	"github/caseyjlaw/tpipe": {
+	"id": "github/caseyjlaw/tpipe",
+	"title": "github/caseyjlaw/tpipe",
+	"url": " https://rseng.github.io/software/repository/github/caseyjlaw/tpipe",
+	"content": "Python library to search radio interferometry data for dispersed (fast) transients **superseded by caseyjlaw/rtpipe**"
 	},
-	"github/ywx649999311/vizic": {
-	"id": "github/ywx649999311/vizic",
-	"title": "github/ywx649999311/vizic",
-	"url": " https://rseng.github.io/software/repository/github/ywx649999311/vizic",
-	"content": "A Jupyter-based Interactive Visualization Tool for Astronomical Catalogs"
+	"github/BioGearsEngine/core": {
+	"id": "github/BioGearsEngine/core",
+	"title": "github/BioGearsEngine/core",
+	"url": " https://rseng.github.io/software/repository/github/BioGearsEngine/core",
+	"content": "Repository for libbiogears and all core utilities"
 	},
-	"github/ajohnson-uoregon/llvm-project": {
-	"id": "github/ajohnson-uoregon/llvm-project",
-	"title": "github/ajohnson-uoregon/llvm-project",
-	"url": " https://rseng.github.io/software/repository/github/ajohnson-uoregon/llvm-project",
-	"content": "The LLVM Project is a collection of modular and reusable compiler and toolchain technologies. Note: the repository does not accept github pull requests at this moment. Please submit your patches at http://reviews.llvm.org."
+	"github/elizakempton/Exo_Transmit": {
+	"id": "github/elizakempton/Exo_Transmit",
+	"title": "github/elizakempton/Exo_Transmit",
+	"url": " https://rseng.github.io/software/repository/github/elizakempton/Exo_Transmit",
+	"content": "Exo-Transmit radiative transfer code for calculating exoplanet transmission spectra"
 	},
-	"github/streamlit/streamlit": {
-	"id": "github/streamlit/streamlit",
-	"title": "github/streamlit/streamlit",
-	"url": " https://rseng.github.io/software/repository/github/streamlit/streamlit",
-	"content": "Streamlit — The fastest way to build data apps in Python"
+	"github/CAMI-challenge/CAMITAX": {
+	"id": "github/CAMI-challenge/CAMITAX",
+	"title": "github/CAMI-challenge/CAMITAX",
+	"url": " https://rseng.github.io/software/repository/github/CAMI-challenge/CAMITAX",
+	"content": "CAMITAX: Taxon labels for microbial genomes"
 	},
-	"github/daniloceano/LorenzCycleToolkit": {
-	"id": "github/daniloceano/LorenzCycleToolkit",
-	"title": "github/daniloceano/LorenzCycleToolkit",
-	"url": " https://rseng.github.io/software/repository/github/daniloceano/LorenzCycleToolkit",
-	"content": "Program for computing the Lorenz Energy Cycle (LEC) in a closed region of the atmosphere."
+	"github/pscicluna/precision": {
+	"id": "github/pscicluna/precision",
+	"title": "github/pscicluna/precision",
+	"url": " https://rseng.github.io/software/repository/github/pscicluna/precision",
+	"content": "A python pipeline to reduce astronomical IR imaging data. Written with SPHERE data in mind, it provides a fast and easy reduction of bright sources suitable for science. While it may not extract the absolute maximum amount of science, the objective is to provide a means to get science-ready data with minimal computing time or human interaction. Development is ongoing."
 	},
-	"github/AndresRTejedor/Mold": {
-	"id": "github/AndresRTejedor/Mold",
-	"title": "github/AndresRTejedor/Mold",
-	"url": " https://rseng.github.io/software/repository/github/AndresRTejedor/Mold",
-	"content": "Lammps package including square-like well potential to implement Mold integration and Lattice mold techniques"
+	"github/dirostri/CREPE": {
+	"id": "github/dirostri/CREPE",
+	"title": "github/dirostri/CREPE",
+	"url": " https://rseng.github.io/software/repository/github/dirostri/CREPE",
+	"content": "GitHub Repository for CREPE: A tool for Transcription Factor Cataloguing"
 	},
-	"github/dazhwu/pydynpd": {
-	"id": "github/dazhwu/pydynpd",
-	"title": "github/dazhwu/pydynpd",
-	"url": " https://rseng.github.io/software/repository/github/dazhwu/pydynpd",
-	"content": "This python package estimates dynamic panel data model using difference GMM and system GMM."
+	"github/FZJ-IEK3-VSA/ETHOS_PeNALPS": {
+	"id": "github/FZJ-IEK3-VSA/ETHOS_PeNALPS",
+	"title": "github/FZJ-IEK3-VSA/ETHOS_PeNALPS",
+	"url": " https://rseng.github.io/software/repository/github/FZJ-IEK3-VSA/ETHOS_PeNALPS",
+	"content": "Petri Net Agent based Load Profile Simulator"
 	},
-	"github/kolikem/loma": {
-	"id": "github/kolikem/loma",
-	"title": "github/kolikem/loma",
-	"url": " https://rseng.github.io/software/repository/github/kolikem/loma",
-	"content": "None"
+	"github/FZJ-IEK3-VSA/FINE": {
+	"id": "github/FZJ-IEK3-VSA/FINE",
+	"title": "github/FZJ-IEK3-VSA/FINE",
+	"url": " https://rseng.github.io/software/repository/github/FZJ-IEK3-VSA/FINE",
+	"content": "The ETHOS.FINE python package provides a framework for modeling, optimizing and assessing energy systems"
 	},
-	"github/lammps/lammps": {
-	"id": "github/lammps/lammps",
-	"title": "github/lammps/lammps",
-	"url": " https://rseng.github.io/software/repository/github/lammps/lammps",
-	"content": "Public development project of the LAMMPS MD software package  "
+	"github/FZJ-IEK3-VSA/LoadProfileGenerator": {
+	"id": "github/FZJ-IEK3-VSA/LoadProfileGenerator",
+	"title": "github/FZJ-IEK3-VSA/LoadProfileGenerator",
+	"url": " https://rseng.github.io/software/repository/github/FZJ-IEK3-VSA/LoadProfileGenerator",
+	"content": "Program for generating load curves for residential consumers. Agentbased and extremly detailed."
 	},
-	"github/secastel/phaser": {
-	"id": "github/secastel/phaser",
-	"title": "github/secastel/phaser",
-	"url": " https://rseng.github.io/software/repository/github/secastel/phaser",
-	"content": "phasing and Allele Specific Expression from RNA-seq"
+	"github/PDB-REDO/libpdb-redo": {
+	"id": "github/PDB-REDO/libpdb-redo",
+	"title": "github/PDB-REDO/libpdb-redo",
+	"url": " https://rseng.github.io/software/repository/github/PDB-REDO/libpdb-redo",
+	"content": "Library containing shared code for various PDB-REDO programs"
 	},
-	"github/natir/rustyread": {
-	"id": "github/natir/rustyread",
-	"title": "github/natir/rustyread",
-	"url": " https://rseng.github.io/software/repository/github/natir/rustyread",
-	"content": "A long read simulator based on badread idea"
+	"github/PDB-REDO/libcifpp": {
+	"id": "github/PDB-REDO/libcifpp",
+	"title": "github/PDB-REDO/libcifpp",
+	"url": " https://rseng.github.io/software/repository/github/PDB-REDO/libcifpp",
+	"content": "Library containing code to manipulate mmCIF and PDB files"
 	},
-	"github/natir/vcf2parquet": {
-	"id": "github/natir/vcf2parquet",
-	"title": "github/natir/vcf2parquet",
-	"url": " https://rseng.github.io/software/repository/github/natir/vcf2parquet",
-	"content": "Convert vcf in parquet "
+	"github/PDB-REDO/tortoize": {
+	"id": "github/PDB-REDO/tortoize",
+	"title": "github/PDB-REDO/tortoize",
+	"url": " https://rseng.github.io/software/repository/github/PDB-REDO/tortoize",
+	"content": "Application to calculate ramachandran z-scores"
 	},
-	"github/natir/yacrd": {
-	"id": "github/natir/yacrd",
-	"title": "github/natir/yacrd",
-	"url": " https://rseng.github.io/software/repository/github/natir/yacrd",
-	"content": "Yet Another Chimeric Read Detector"
+	"github/PDB-REDO/density-fitness": {
+	"id": "github/PDB-REDO/density-fitness",
+	"title": "github/PDB-REDO/density-fitness",
+	"url": " https://rseng.github.io/software/repository/github/PDB-REDO/density-fitness",
+	"content": "Application to calculate the density statistics (RSR, SRSR, RSCCS, EDIAm and OPIA)  for x-ray structures"
 	},
-	"github/GRTLCollaboration/GRChombo": {
-	"id": "github/GRTLCollaboration/GRChombo",
-	"title": "github/GRTLCollaboration/GRChombo",
-	"url": " https://rseng.github.io/software/repository/github/GRTLCollaboration/GRChombo",
-	"content": "An AMR based open-source code for numerical relativity simulations."
+	"github/PDB-REDO/cif-tools": {
+	"id": "github/PDB-REDO/cif-tools",
+	"title": "github/PDB-REDO/cif-tools",
+	"url": " https://rseng.github.io/software/repository/github/PDB-REDO/cif-tools",
+	"content": "A suite of programs to manipulate and examine mmCIF files"
 	},
-	"github/GRTLCollaboration/GRFolres": {
-	"id": "github/GRTLCollaboration/GRFolres",
-	"title": "github/GRTLCollaboration/GRFolres",
-	"url": " https://rseng.github.io/software/repository/github/GRTLCollaboration/GRFolres",
-	"content": "Extension to GRChombo for Modified Gravity simulations"
+	"github/PDB-REDO/dssp": {
+	"id": "github/PDB-REDO/dssp",
+	"title": "github/PDB-REDO/dssp",
+	"url": " https://rseng.github.io/software/repository/github/PDB-REDO/dssp",
+	"content": "Application to assign secondary structure to proteins"
 	},
-	"github/GRTLCollaboration/GRDzhadzha": {
-	"id": "github/GRTLCollaboration/GRDzhadzha",
-	"title": "github/GRTLCollaboration/GRDzhadzha",
-	"url": " https://rseng.github.io/software/repository/github/GRTLCollaboration/GRDzhadzha",
-	"content": "A code to evolve matter on curved spacetimes with an analytic time and space dependence, e.g. black holes"
+	"github/alphapsa/PIPE": {
+	"id": "github/alphapsa/PIPE",
+	"title": "github/alphapsa/PIPE",
+	"url": " https://rseng.github.io/software/repository/github/alphapsa/PIPE",
+	"content": "PSF Imagette Photometric Extraction - PSF photometry for CHEOPS data"
 	},
-	"github/ryanvarley/exodata": {
-	"id": "github/ryanvarley/exodata",
-	"title": "github/ryanvarley/exodata",
-	"url": " https://rseng.github.io/software/repository/github/ryanvarley/exodata",
-	"content": "Exoplanet catalogue interface and exploratory analysis tool"
+	"github/astrocatalogs/astrocats": {
+	"id": "github/astrocatalogs/astrocats",
+	"title": "github/astrocatalogs/astrocats",
+	"url": " https://rseng.github.io/software/repository/github/astrocatalogs/astrocats",
+	"content": "Astrocats package for constructing astronomical catalogs"
 	},
-	"github/ulelab/ultraplex": {
-	"id": "github/ulelab/ultraplex",
-	"title": "github/ulelab/ultraplex",
-	"url": " https://rseng.github.io/software/repository/github/ulelab/ultraplex",
-	"content": "Ultra-fast 5&#39; and 3&#39; demultiplexer"
+	"github/JungleComputing/rocket": {
+	"id": "github/JungleComputing/rocket",
+	"title": "github/JungleComputing/rocket",
+	"url": " https://rseng.github.io/software/repository/github/JungleComputing/rocket",
+	"content": "Rocket is a Constellation-based runtime system for efficient execution of all-pair compute problem on distributed heterogeneous platforms"
 	},
-	"github/dunhamlab/PacRAT": {
-	"id": "github/dunhamlab/PacRAT",
-	"title": "github/dunhamlab/PacRAT",
-	"url": " https://rseng.github.io/software/repository/github/dunhamlab/PacRAT",
-	"content": "Improving long-read barcode-variant mapping using multiple sequence alignment. "
+	"github/JuliaGeometry/DelaunayTriangulation.jl": {
+	"id": "github/JuliaGeometry/DelaunayTriangulation.jl",
+	"title": "github/JuliaGeometry/DelaunayTriangulation.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaGeometry/DelaunayTriangulation.jl",
+	"content": "DelaunayTriangulation.jl: A Julia package for Delaunay triangulations and Voronoi tessellations in the plane"
 	},
-	"github/OliverFHD/GPUniverse": {
-	"id": "github/OliverFHD/GPUniverse",
-	"title": "github/OliverFHD/GPUniverse",
-	"url": " https://rseng.github.io/software/repository/github/OliverFHD/GPUniverse",
-	"content": "Modelling holographic quantum fields in finite dimensional Hilbert spaces with Generalised Pauli Operators (GPOs) and overlapping degrees of freedom. Also: simulate overlapping qubits with GPUs."
+	"github/heatherprince/cosmoped": {
+	"id": "github/heatherprince/cosmoped",
+	"title": "github/heatherprince/cosmoped",
+	"url": " https://rseng.github.io/software/repository/github/heatherprince/cosmoped",
+	"content": "Compressed CMB likelihood code that uses the MOPED (Multiple/Massively Optimised Parameter Estimation and Data compression) compression scheme to compress the Planck power spectrum"
 	},
-	"github/benlansdell/ethome": {
-	"id": "github/benlansdell/ethome",
-	"title": "github/benlansdell/ethome",
-	"url": " https://rseng.github.io/software/repository/github/benlansdell/ethome",
-	"content": "Tools for machine learning of animal behavior"
+	"github/easybuilders/easybuild": {
+	"id": "github/easybuilders/easybuild",
+	"title": "github/easybuilders/easybuild",
+	"url": " https://rseng.github.io/software/repository/github/easybuilders/easybuild",
+	"content": "EasyBuild - building software with ease"
 	},
-	"github/trichter/yam": {
-	"id": "github/trichter/yam",
-	"title": "github/trichter/yam",
-	"url": " https://rseng.github.io/software/repository/github/trichter/yam",
-	"content": "Yet another monitoring tool using correlations of ambient noise"
+	"github/project-asgard/asgard": {
+	"id": "github/project-asgard/asgard",
+	"title": "github/project-asgard/asgard",
+	"url": " https://rseng.github.io/software/repository/github/project-asgard/asgard",
+	"content": "None"
 	},
-	"github/HDFGroup/hdf5": {
-	"id": "github/HDFGroup/hdf5",
-	"title": "github/HDFGroup/hdf5",
-	"url": " https://rseng.github.io/software/repository/github/HDFGroup/hdf5",
-	"content": "Official HDF5® Library Repository"
+	"github/warrickball/tomso": {
+	"id": "github/warrickball/tomso",
+	"title": "github/warrickball/tomso",
+	"url": " https://rseng.github.io/software/repository/github/warrickball/tomso",
+	"content": "TOMSO (Tools for Models of Stars and their Oscillations) is a set of Python modules for loading and saving input and output files for and from stellar evolution and oscillation codes."
 	},
-	"github/astromb/PICsar2D": {
-	"id": "github/astromb/PICsar2D",
-	"title": "github/astromb/PICsar2D",
-	"url": " https://rseng.github.io/software/repository/github/astromb/PICsar2D",
-	"content": "Particle In Cell pulSAR code"
+	"github/pnnl/HyperNetX": {
+	"id": "github/pnnl/HyperNetX",
+	"title": "github/pnnl/HyperNetX",
+	"url": " https://rseng.github.io/software/repository/github/pnnl/HyperNetX",
+	"content": "Python package for hypergraph analysis and visualization."
 	},
-	"github/tkchafin/autostreamtree": {
-	"id": "github/tkchafin/autostreamtree",
-	"title": "github/tkchafin/autostreamtree",
-	"url": " https://rseng.github.io/software/repository/github/tkchafin/autostreamtree",
-	"content": "Stream trees for SNP datasets"
+	"github/pnnl/interflow": {
+	"id": "github/pnnl/interflow",
+	"title": "github/pnnl/interflow",
+	"url": " https://rseng.github.io/software/repository/github/pnnl/interflow",
+	"content": "A Python package for organizing and calculating cross-sectoral interdependency flow values"
 	},
-	"github/moustakas/iSEDfit": {
-	"id": "github/moustakas/iSEDfit",
-	"title": "github/moustakas/iSEDfit",
-	"url": " https://rseng.github.io/software/repository/github/moustakas/iSEDfit",
-	"content": "iSEDfit is a Bayesian spectral energy distribution fitting code designed to extract the physical properties of galaxies from broadband photometry."
+	"github/exoml/plan-net": {
+	"id": "github/exoml/plan-net",
+	"title": "github/exoml/plan-net",
+	"url": " https://rseng.github.io/software/repository/github/exoml/plan-net",
+	"content": "An Ensemble of Bayesian Neural Networks for Exoplanetary Atmospheric Retrieval"
 	},
-	"github/ShubhadeepSadhukhan1993/fastSF": {
-	"id": "github/ShubhadeepSadhukhan1993/fastSF",
-	"title": "github/ShubhadeepSadhukhan1993/fastSF",
-	"url": " https://rseng.github.io/software/repository/github/ShubhadeepSadhukhan1993/fastSF",
-	"content": "A hybrid parallel C++ code to compute structure function of different order"
+	"github/haowenz/chromap": {
+	"id": "github/haowenz/chromap",
+	"title": "github/haowenz/chromap",
+	"url": " https://rseng.github.io/software/repository/github/haowenz/chromap",
+	"content": "is an ultrafast method for aligning and preprocessing high throughput chromatin profiles."
 	},
-	"github/cespinosa/pyHIIexplorerV2": {
-	"id": "github/cespinosa/pyHIIexplorerV2",
-	"title": "github/cespinosa/pyHIIexplorerV2",
-	"url": " https://rseng.github.io/software/repository/github/cespinosa/pyHIIexplorerV2",
-	"content": "None"
+	"github/stamatak/ExaML": {
+	"id": "github/stamatak/ExaML",
+	"title": "github/stamatak/ExaML",
+	"url": " https://rseng.github.io/software/repository/github/stamatak/ExaML",
+	"content": "Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI"
 	},
-	"github/jnktsj/DNApi": {
-	"id": "github/jnktsj/DNApi",
-	"title": "github/jnktsj/DNApi",
-	"url": " https://rseng.github.io/software/repository/github/jnktsj/DNApi",
-	"content": "De novo adapter prediction algorithm for small RNA sequencing data"
+	"github/stamatak/AxPcoords.dist": {
+	"id": "github/stamatak/AxPcoords.dist",
+	"title": "github/stamatak/AxPcoords.dist",
+	"url": " https://rseng.github.io/software/repository/github/stamatak/AxPcoords.dist",
+	"content": "AxPcoords implementation "
 	},
-	"github/dkoboldt/varscan": {
-	"id": "github/dkoboldt/varscan",
-	"title": "github/dkoboldt/varscan",
-	"url": " https://rseng.github.io/software/repository/github/dkoboldt/varscan",
-	"content": "Variant calling and somatic mutation/CNV detection for next-generation sequencing data"
+	"github/koustavchandra/gwforge": {
+	"id": "github/koustavchandra/gwforge",
+	"title": "github/koustavchandra/gwforge",
+	"url": " https://rseng.github.io/software/repository/github/koustavchandra/gwforge",
+	"content": "A lightweight code to generate mock gravitational wave detector data using user-defined population and arbritary detector sensitivity."
 	},
-	"github/shihyuntang/igrins_rv": {
-	"id": "github/shihyuntang/igrins_rv",
-	"title": "github/shihyuntang/igrins_rv",
-	"url": " https://rseng.github.io/software/repository/github/shihyuntang/igrins_rv",
-	"content": "Welcome to IGRINS RV, a open source pipeline for extracting radial velocity (RV) for the Immersion GRating INfrared Spectrometer (IGRINS) instrument. Please contact asa.stahl@rice.edu or sytang@lowell.edu for more detail."
+	"github/rordenlab/dcm2niix": {
+	"id": "github/rordenlab/dcm2niix",
+	"title": "github/rordenlab/dcm2niix",
+	"url": " https://rseng.github.io/software/repository/github/rordenlab/dcm2niix",
+	"content": "is a designed to convert neuroimaging data from the DICOM format to the NIfTI format."
 	},
-	"github/DreamCloud-Project/McSim-Cycle-accurate-Xbar": {
-	"id": "github/DreamCloud-Project/McSim-Cycle-accurate-Xbar",
-	"title": "github/DreamCloud-Project/McSim-Cycle-accurate-Xbar",
-	"url": " https://rseng.github.io/software/repository/github/DreamCloud-Project/McSim-Cycle-accurate-Xbar",
-	"content": "Manycore platform Simulation tool for crossbar-based platform at a Cycle-accurate level"
+	"github/holmescao/ANTS_marking_and_analysis_tools": {
+	"id": "github/holmescao/ANTS_marking_and_analysis_tools",
+	"title": "github/holmescao/ANTS_marking_and_analysis_tools",
+	"url": " https://rseng.github.io/software/repository/github/holmescao/ANTS_marking_and_analysis_tools",
+	"content": "None"
 	},
-	"github/DreamCloud-Project/McSim-TLM-NoC": {
-	"id": "github/DreamCloud-Project/McSim-TLM-NoC",
-	"title": "github/DreamCloud-Project/McSim-TLM-NoC",
-	"url": " https://rseng.github.io/software/repository/github/DreamCloud-Project/McSim-TLM-NoC",
-	"content": "Manycore platform Simulation tool for NoC-based platform at a Transactional Level Modeling level"
+	"github/liuhao-cn/fastSHT": {
+	"id": "github/liuhao-cn/fastSHT",
+	"title": "github/liuhao-cn/fastSHT",
+	"url": " https://rseng.github.io/software/repository/github/liuhao-cn/fastSHT",
+	"content": "Fast Spherical Harmonic Transforms for a large number of sky maps"
 	},
-	"github/DreamCloud-Project/AMALTHEA-SimGrid": {
-	"id": "github/DreamCloud-Project/AMALTHEA-SimGrid",
-	"title": "github/DreamCloud-Project/AMALTHEA-SimGrid",
-	"url": " https://rseng.github.io/software/repository/github/DreamCloud-Project/AMALTHEA-SimGrid",
-	"content": "Simulator for cloud applications described using the Amalthea application model on top of SimGrid"
+	"github/ValeevGroup/mpqc": {
+	"id": "github/ValeevGroup/mpqc",
+	"title": "github/ValeevGroup/mpqc",
+	"url": " https://rseng.github.io/software/repository/github/ValeevGroup/mpqc",
+	"content": "The Massively Parallel Quantum Chemistry program, MPQC, computes properties of atoms and molecules from first principles using the time independent Schrödinger equation."
 	},
-	"github/DreamCloud-Project/AMALTHEA-Microworkload-Generator": {
-	"id": "github/DreamCloud-Project/AMALTHEA-Microworkload-Generator",
-	"title": "github/DreamCloud-Project/AMALTHEA-Microworkload-Generator",
-	"url": " https://rseng.github.io/software/repository/github/DreamCloud-Project/AMALTHEA-Microworkload-Generator",
-	"content": "Command line tool generating micro workloads from an AMALTHEA application"
+	"github/LiShuTJ/NDNet": {
+	"id": "github/LiShuTJ/NDNet",
+	"title": "github/LiShuTJ/NDNet",
+	"url": " https://rseng.github.io/software/repository/github/LiShuTJ/NDNet",
+	"content": "None"
 	},
-	"github/DreamCloud-Project/McSim-Cycle-accurate-NoC": {
-	"id": "github/DreamCloud-Project/McSim-Cycle-accurate-NoC",
-	"title": "github/DreamCloud-Project/McSim-Cycle-accurate-NoC",
-	"url": " https://rseng.github.io/software/repository/github/DreamCloud-Project/McSim-Cycle-accurate-NoC",
-	"content": "Manycore platform Simulation tool for NoC-based platform at a Cycle-accurate level"
+	"github/ijuric/MAPS": {
+	"id": "github/ijuric/MAPS",
+	"title": "github/ijuric/MAPS",
+	"url": " https://rseng.github.io/software/repository/github/ijuric/MAPS",
+	"content": "MAPS (Model-based Analysis of PLAC-Seq data) pipeline is a a set of multiple scripts used to analyze PLAC-Seq and HiChIP data."
 	},
-	"github/mendezVKI/MODULO": {
-	"id": "github/mendezVKI/MODULO",
-	"title": "github/mendezVKI/MODULO",
-	"url": " https://rseng.github.io/software/repository/github/mendezVKI/MODULO",
-	"content": "MODULO (MODal mULtiscale pOd) is a software developed at the von Karman Institute to perform Multiscale Modal Analysis of numerical and experimental data using the mPOD. "
+	"github/mattpitkin/psrqpy": {
+	"id": "github/mattpitkin/psrqpy",
+	"title": "github/mattpitkin/psrqpy",
+	"url": " https://rseng.github.io/software/repository/github/mattpitkin/psrqpy",
+	"content": "A python module to query the ATNF pulsar catalogue"
 	},
-	"github/jiffyclub/palettable": {
-	"id": "github/jiffyclub/palettable",
-	"title": "github/jiffyclub/palettable",
-	"url": " https://rseng.github.io/software/repository/github/jiffyclub/palettable",
-	"content": "Color palettes for Python"
+	"github/mattpitkin/lintegrate": {
+	"id": "github/mattpitkin/lintegrate",
+	"title": "github/mattpitkin/lintegrate",
+	"url": " https://rseng.github.io/software/repository/github/mattpitkin/lintegrate",
+	"content": "A numerical integration routine that works for the natural logarithm of functions "
 	},
-	"github/jbytecode/LinRegOutliers": {
-	"id": "github/jbytecode/LinRegOutliers",
-	"title": "github/jbytecode/LinRegOutliers",
-	"url": " https://rseng.github.io/software/repository/github/jbytecode/LinRegOutliers",
-	"content": "Direct and robust methods for outlier detection in linear regression"
+	"github/KIT-MBS/pyREX": {
+	"id": "github/KIT-MBS/pyREX",
+	"title": "github/KIT-MBS/pyREX",
+	"url": " https://rseng.github.io/software/repository/github/KIT-MBS/pyREX",
+	"content": "Workflow-orientated python package for Replica Exchange Molecular Dynamics"
 	},
-	"github/jbytecode/JMcDM": {
-	"id": "github/jbytecode/JMcDM",
-	"title": "github/jbytecode/JMcDM",
-	"url": " https://rseng.github.io/software/repository/github/jbytecode/JMcDM",
-	"content": "A package for Multiple criteria decision-making techniques in Julia"
+	"github/HCGB-IGTP/spaTyper": {
+	"id": "github/HCGB-IGTP/spaTyper",
+	"title": "github/HCGB-IGTP/spaTyper",
+	"url": " https://rseng.github.io/software/repository/github/HCGB-IGTP/spaTyper",
+	"content": "Computational method for finding spa types."
 	},
-	"github/ethankruse/koi3278": {
-	"id": "github/ethankruse/koi3278",
-	"title": "github/ethankruse/koi3278",
-	"url": " https://rseng.github.io/software/repository/github/ethankruse/koi3278",
-	"content": "Analysis files for the KOI-3278 system"
+	"github/HCGB-IGTP/XICRA": {
+	"id": "github/HCGB-IGTP/XICRA",
+	"title": "github/HCGB-IGTP/XICRA",
+	"url": " https://rseng.github.io/software/repository/github/HCGB-IGTP/XICRA",
+	"content": "Small RNAseq pipeline for paired-end reads"
 	},
-	"github/NREL/OpenOA": {
-	"id": "github/NREL/OpenOA",
-	"title": "github/NREL/OpenOA",
-	"url": " https://rseng.github.io/software/repository/github/NREL/OpenOA",
-	"content": "This library provides a framework for working with large timeseries data from wind plants, such as SCADA. Its development has been motivated by the WP3 Benchmarking (PRUF) project, which aims to provide a reference implementation for plant-level performance assessment."
+	"github/smoh/kinesis": {
+	"id": "github/smoh/kinesis",
+	"title": "github/smoh/kinesis",
+	"url": " https://rseng.github.io/software/repository/github/smoh/kinesis",
+	"content": "kinematic modelling of clusters with gaia"
 	},
-	"github/NREL/graph-env": {
-	"id": "github/NREL/graph-env",
-	"title": "github/NREL/graph-env",
-	"url": " https://rseng.github.io/software/repository/github/NREL/graph-env",
-	"content": "Reinforcement learning for combinatorial optimization over directed graphs"
+	"github/ComplexGroupInteractions/xgi": {
+	"id": "github/ComplexGroupInteractions/xgi",
+	"title": "github/ComplexGroupInteractions/xgi",
+	"url": " https://rseng.github.io/software/repository/github/ComplexGroupInteractions/xgi",
+	"content": "CompleX Group Interactions (XGI) provides an ecosystem for the analysis and representation of complex systems with group interactions."
 	},
-	"github/NREL/G2Aero": {
-	"id": "github/NREL/G2Aero",
-	"title": "github/NREL/G2Aero",
-	"url": " https://rseng.github.io/software/repository/github/NREL/G2Aero",
-	"content": "Separable shape tensors for aerodynamic design"
+	"github/mscroggs/symfem": {
+	"id": "github/mscroggs/symfem",
+	"title": "github/mscroggs/symfem",
+	"url": " https://rseng.github.io/software/repository/github/mscroggs/symfem",
+	"content": "A symbolic finite element definition library"
 	},
-	"github/ewatercycle/era5cli": {
-	"id": "github/ewatercycle/era5cli",
-	"title": "github/ewatercycle/era5cli",
-	"url": " https://rseng.github.io/software/repository/github/ewatercycle/era5cli",
-	"content": "Command Line Interface to download ERA5 from Copernicus Climate Data Service"
+	"github/seeh/surprise": {
+	"id": "github/seeh/surprise",
+	"title": "github/seeh/surprise",
+	"url": " https://rseng.github.io/software/repository/github/seeh/surprise",
+	"content": "Package for estimating relative entropy and Surprise between two posterior samples, assuming they are Gaussian."
 	},
-	"github/mggg/ecological-inference": {
-	"id": "github/mggg/ecological-inference",
-	"title": "github/mggg/ecological-inference",
-	"url": " https://rseng.github.io/software/repository/github/mggg/ecological-inference",
+	"github/liniguez/Insplico_simulations": {
+	"id": "github/liniguez/Insplico_simulations",
+	"title": "github/liniguez/Insplico_simulations",
+	"url": " https://rseng.github.io/software/repository/github/liniguez/Insplico_simulations",
 	"content": "None"
 	},
-	"github/optuna/optuna": {
-	"id": "github/optuna/optuna",
-	"title": "github/optuna/optuna",
-	"url": " https://rseng.github.io/software/repository/github/optuna/optuna",
-	"content": "A hyperparameter optimization framework"
+	"github/kno10/python-kmedoids": {
+	"id": "github/kno10/python-kmedoids",
+	"title": "github/kno10/python-kmedoids",
+	"url": " https://rseng.github.io/software/repository/github/kno10/python-kmedoids",
+	"content": "Fast K-Medoids clustering in Python with FasterPAM"
 	},
-	"github/hall-lab/bamkit": {
-	"id": "github/hall-lab/bamkit",
-	"title": "github/hall-lab/bamkit",
-	"url": " https://rseng.github.io/software/repository/github/hall-lab/bamkit",
-	"content": "Tools for common BAM file manipulations"
+	"github/bioinfo-center-pasteur-fr/toppred": {
+	"id": "github/bioinfo-center-pasteur-fr/toppred",
+	"title": "github/bioinfo-center-pasteur-fr/toppred",
+	"url": " https://rseng.github.io/software/repository/github/bioinfo-center-pasteur-fr/toppred",
+	"content": "toppred :: Transmembrane topology prediction based on von Heijne, G. (1992) Membrane Protein Structure Prediction: Hydrophobicity Analysis and the &#39;Positive Inside&#39; (PMID: 1593632)"
 	},
-	"github/hall-lab/speedseq": {
-	"id": "github/hall-lab/speedseq",
-	"title": "github/hall-lab/speedseq",
-	"url": " https://rseng.github.io/software/repository/github/hall-lab/speedseq",
-	"content": "A flexible framework for rapid genome analysis and interpretation"
+	"github/NuSpaceSim/nupyprop": {
+	"id": "github/NuSpaceSim/nupyprop",
+	"title": "github/NuSpaceSim/nupyprop",
+	"url": " https://rseng.github.io/software/repository/github/NuSpaceSim/nupyprop",
+	"content": "None"
 	},
-	"github/spectralcode/OCTproZ": {
-	"id": "github/spectralcode/OCTproZ",
-	"title": "github/spectralcode/OCTproZ",
-	"url": " https://rseng.github.io/software/repository/github/spectralcode/OCTproZ",
-	"content": "OCTproZ is an open source software for optical coherence tomography processing and visualization."
+	"github/raghuastro/GRIZZLY": {
+	"id": "github/raghuastro/GRIZZLY",
+	"title": "github/raghuastro/GRIZZLY",
+	"url": " https://rseng.github.io/software/repository/github/raghuastro/GRIZZLY",
+	"content": "None"
 	},
-	"github/sosl/H-FISTA": {
-	"id": "github/sosl/H-FISTA",
-	"title": "github/sosl/H-FISTA",
-	"url": " https://rseng.github.io/software/repository/github/sosl/H-FISTA",
-	"content": "Hierarchical FISTA - phase retrieval for pulsar spectroscopy"
+	"github/iAART/aart": {
+	"id": "github/iAART/aart",
+	"title": "github/iAART/aart",
+	"url": " https://rseng.github.io/software/repository/github/iAART/aart",
+	"content": "An adaptive analytical ray-tracing code to study black hole photon rings"
 	},
-	"github/kim554/wdec": {
-	"id": "github/kim554/wdec",
-	"title": "github/kim554/wdec",
-	"url": " https://rseng.github.io/software/repository/github/kim554/wdec",
-	"content": "White Dwarf Evolution Code"
+	"github/vals/umis": {
+	"id": "github/vals/umis",
+	"title": "github/vals/umis",
+	"url": " https://rseng.github.io/software/repository/github/vals/umis",
+	"content": "Tools for processing UMI RNA-tag data"
 	},
-	"github/danxhuber/galclassify": {
-	"id": "github/danxhuber/galclassify",
-	"title": "github/danxhuber/galclassify",
-	"url": " https://rseng.github.io/software/repository/github/danxhuber/galclassify",
-	"content": "Perform stellar classifications using a galactic population synthesis model"
+	"github/openmm/openmm": {
+	"id": "github/openmm/openmm",
+	"title": "github/openmm/openmm",
+	"url": " https://rseng.github.io/software/repository/github/openmm/openmm",
+	"content": "OpenMM is a toolkit for molecular simulation using high performance GPU code. "
 	},
-	"github/danxhuber/evolstate": {
-	"id": "github/danxhuber/evolstate",
-	"title": "github/danxhuber/evolstate",
-	"url": " https://rseng.github.io/software/repository/github/danxhuber/evolstate",
-	"content": "Assign simple evolutionary states to stars"
+	"github/gmrandazzo/libscientific": {
+	"id": "github/gmrandazzo/libscientific",
+	"title": "github/gmrandazzo/libscientific",
+	"url": " https://rseng.github.io/software/repository/github/gmrandazzo/libscientific",
+	"content": "Libscientific is a C framework  for multivariate and other statistical analysis"
 	},
-	"github/QEF/q-e": {
-	"id": "github/QEF/q-e",
-	"title": "github/QEF/q-e",
-	"url": " https://rseng.github.io/software/repository/github/QEF/q-e",
-	"content": "Mirror of the Quantum ESPRESSO repository. Please do not post Issues or pull requests here. Use gitlab.com/QEF/q-e instead."
+	"github/lpfworld/DMPNet": {
+	"id": "github/lpfworld/DMPNet",
+	"title": "github/lpfworld/DMPNet",
+	"url": " https://rseng.github.io/software/repository/github/lpfworld/DMPNet",
+	"content": "DMPNet"
 	},
-	"github/euroargodev/argopy": {
-	"id": "github/euroargodev/argopy",
-	"title": "github/euroargodev/argopy",
-	"url": " https://rseng.github.io/software/repository/github/euroargodev/argopy",
-	"content": "A python library for Argo data beginners and experts"
+	"github/alicia-ziying-yang/conTEXT-explorer": {
+	"id": "github/alicia-ziying-yang/conTEXT-explorer",
+	"title": "github/alicia-ziying-yang/conTEXT-explorer",
+	"url": " https://rseng.github.io/software/repository/github/alicia-ziying-yang/conTEXT-explorer",
+	"content": "ConTEXT Explorer is an open Web-based system for exploring and visualizing concepts (combinations of occurring words and phrases) over time in the text documents."
 	},
-	"github/ECP-copa/Cabana": {
-	"id": "github/ECP-copa/Cabana",
-	"title": "github/ECP-copa/Cabana",
-	"url": " https://rseng.github.io/software/repository/github/ECP-copa/Cabana",
-	"content": "Performance-portable library for particle-based simulations"
+	"github/hpc4cmb/toast": {
+	"id": "github/hpc4cmb/toast",
+	"title": "github/hpc4cmb/toast",
+	"url": " https://rseng.github.io/software/repository/github/hpc4cmb/toast",
+	"content": "Time Ordered Astrophysics Scalable Tools"
 	},
-	"github/BlauGroup/RNMC": {
-	"id": "github/BlauGroup/RNMC",
-	"title": "github/BlauGroup/RNMC",
-	"url": " https://rseng.github.io/software/repository/github/BlauGroup/RNMC",
-	"content": "None"
+	"github/miguelcarcamov/gpuvmem": {
+	"id": "github/miguelcarcamov/gpuvmem",
+	"title": "github/miguelcarcamov/gpuvmem",
+	"url": " https://rseng.github.io/software/repository/github/miguelcarcamov/gpuvmem",
+	"content": "GPU Framework for Radio Astronomical Image Synthesis"
 	},
-	"github/AtrCheema/SeqMetrics": {
-	"id": "github/AtrCheema/SeqMetrics",
-	"title": "github/AtrCheema/SeqMetrics",
-	"url": " https://rseng.github.io/software/repository/github/AtrCheema/SeqMetrics",
-	"content": "Various errors for tabular/structured/time-series data"
+	"github/miguelcarcamov/csromer": {
+	"id": "github/miguelcarcamov/csromer",
+	"title": "github/miguelcarcamov/csromer",
+	"url": " https://rseng.github.io/software/repository/github/miguelcarcamov/csromer",
+	"content": "Compressive Sensing and Optimization Framework to reconstruct Faraday Depth signals"
 	},
-	"github/skypyproject/skypy": {
-	"id": "github/skypyproject/skypy",
-	"title": "github/skypyproject/skypy",
-	"url": " https://rseng.github.io/software/repository/github/skypyproject/skypy",
-	"content": "SkyPy: A package for modelling the Universe."
+	"github/julianreul/mode_behave": {
+	"id": "github/julianreul/mode_behave",
+	"title": "github/julianreul/mode_behave",
+	"url": " https://rseng.github.io/software/repository/github/julianreul/mode_behave",
+	"content": "A Python package for estimating mixed logit models with nonparametric distributions"
 	},
-	"github/gymreklab/chips": {
-	"id": "github/gymreklab/chips",
-	"title": "github/gymreklab/chips",
-	"url": " https://rseng.github.io/software/repository/github/gymreklab/chips",
-	"content": "Simulation tool for ChIP- and other -seq experiments"
+	"github/weecology/retriever": {
+	"id": "github/weecology/retriever",
+	"title": "github/weecology/retriever",
+	"url": " https://rseng.github.io/software/repository/github/weecology/retriever",
+	"content": "Quickly download, clean up, and install public datasets into a database management system"
 	},
-	"github/gymreklab/GangSTR": {
-	"id": "github/gymreklab/GangSTR",
-	"title": "github/gymreklab/GangSTR",
-	"url": " https://rseng.github.io/software/repository/github/gymreklab/GangSTR",
-	"content": "A tool for profiling long STRs from short reads"
+	"github/Degiacomi-Lab/molearn": {
+	"id": "github/Degiacomi-Lab/molearn",
+	"title": "github/Degiacomi-Lab/molearn",
+	"url": " https://rseng.github.io/software/repository/github/Degiacomi-Lab/molearn",
+	"content": "protein conformational spaces meet machine learning"
 	},
-	"github/VBlesius/RHRT": {
-	"id": "github/VBlesius/RHRT",
-	"title": "github/VBlesius/RHRT",
-	"url": " https://rseng.github.io/software/repository/github/VBlesius/RHRT",
-	"content": "R package to assess Heart Rate Turbulence from RR interval data"
+	"github/ManuelBehrendt/Mera.jl": {
+	"id": "github/ManuelBehrendt/Mera.jl",
+	"title": "github/ManuelBehrendt/Mera.jl",
+	"url": " https://rseng.github.io/software/repository/github/ManuelBehrendt/Mera.jl",
+	"content": " Analysis Tool for Astrophysical Simulation Data in the Julia Language"
 	},
-	"github/e-koch/FilFinder": {
-	"id": "github/e-koch/FilFinder",
-	"title": "github/e-koch/FilFinder",
-	"url": " https://rseng.github.io/software/repository/github/e-koch/FilFinder",
-	"content": "Detection of filamentary structure in molecular clouds"
+	"github/abhisrkckl/GWecc": {
+	"id": "github/abhisrkckl/GWecc",
+	"title": "github/abhisrkckl/GWecc",
+	"url": " https://rseng.github.io/software/repository/github/abhisrkckl/GWecc",
+	"content": "GWecc is a C++ code that computes the pulsar timing array (PTA) signals induced by eccentric supermassive binaries."
 	},
-	"github/bwinkel/cygrid": {
-	"id": "github/bwinkel/cygrid",
-	"title": "github/bwinkel/cygrid",
-	"url": " https://rseng.github.io/software/repository/github/bwinkel/cygrid",
-	"content": "Cygrid is a cython-powered convolution-based gridding module for astronomy"
+	"github/GOALS-survey/CAFE": {
+	"id": "github/GOALS-survey/CAFE",
+	"title": "github/GOALS-survey/CAFE",
+	"url": " https://rseng.github.io/software/repository/github/GOALS-survey/CAFE",
+	"content": "Spectral decomposition that works for astronomical data"
 	},
-	"github/ropensci-archive/arresteddev": {
-	"id": "github/ropensci-archive/arresteddev",
-	"title": "github/ropensci-archive/arresteddev",
-	"url": " https://rseng.github.io/software/repository/github/ropensci-archive/arresteddev",
-	"content": "Arrested Development"
+	"github/mcataneo/mochi_class_public": {
+	"id": "github/mcataneo/mochi_class_public",
+	"title": "github/mcataneo/mochi_class_public",
+	"url": " https://rseng.github.io/software/repository/github/mcataneo/mochi_class_public",
+	"content": "None"
 	},
-	"github/ropensci-archive/rodev": {
-	"id": "github/ropensci-archive/rodev",
-	"title": "github/ropensci-archive/rodev",
-	"url": " https://rseng.github.io/software/repository/github/ropensci-archive/rodev",
-	"content": "Helpers for rOpenSci Package Authors :package: :sparkles:"
+	"github/kehrlab/PopDel": {
+	"id": "github/kehrlab/PopDel",
+	"title": "github/kehrlab/PopDel",
+	"url": " https://rseng.github.io/software/repository/github/kehrlab/PopDel",
+	"content": "Population-wide Deletion Calling"
 	},
-	"github/ropensci-archive/reviewer": {
-	"id": "github/ropensci-archive/reviewer",
-	"title": "github/ropensci-archive/reviewer",
-	"url": " https://rseng.github.io/software/repository/github/ropensci-archive/reviewer",
-	"content": ":no_entry: ARCHIVED :no_entry:  Improving the track changes and reviewing experience in R markdown"
+	"github/castro-gzlz/mr-plotter": {
+	"id": "github/castro-gzlz/mr-plotter",
+	"title": "github/castro-gzlz/mr-plotter",
+	"url": " https://rseng.github.io/software/repository/github/castro-gzlz/mr-plotter",
+	"content": "Mass-Radius diagrams with a wide range of models and relationships"
 	},
-	"github/ropensci-archive/monkeylearn": {
-	"id": "github/ropensci-archive/monkeylearn",
-	"title": "github/ropensci-archive/monkeylearn",
-	"url": " https://rseng.github.io/software/repository/github/ropensci-archive/monkeylearn",
-	"content": ":no_entry: ARCHIVED :no_entry: :monkey: R package for text analysis with Monkeylearn :monkey:"
+	"github/bcjaeger/aorsf": {
+	"id": "github/bcjaeger/aorsf",
+	"title": "github/bcjaeger/aorsf",
+	"url": " https://rseng.github.io/software/repository/github/bcjaeger/aorsf",
+	"content": "Accelerated Oblique Random Survival Forests"
 	},
-	"github/DOnghiaGroup/MGwave": {
-	"id": "github/DOnghiaGroup/MGwave",
-	"title": "github/DOnghiaGroup/MGwave",
-	"url": " https://rseng.github.io/software/repository/github/DOnghiaGroup/MGwave",
-	"content": "Wavelet transformation code to enable detection of kinematic moving groups in astronomical data."
+	"github/umbramortem/nProFit": {
+	"id": "github/umbramortem/nProFit",
+	"title": "github/umbramortem/nProFit",
+	"url": " https://rseng.github.io/software/repository/github/umbramortem/nProFit",
+	"content": "Tool for analysis of surface brightness profiles"
 	},
-	"github/antonpannekoek/sunbather": {
-	"id": "github/antonpannekoek/sunbather",
-	"title": "github/antonpannekoek/sunbather",
-	"url": " https://rseng.github.io/software/repository/github/antonpannekoek/sunbather",
-	"content": "Python/Cloudy package for simulating escaping exoplanet atmospheres and their transit spectra."
+	"github/vijayvarma392/binaryBHexp": {
+	"id": "github/vijayvarma392/binaryBHexp",
+	"title": "github/vijayvarma392/binaryBHexp",
+	"url": " https://rseng.github.io/software/repository/github/vijayvarma392/binaryBHexp",
+	"content": "The binary Black Hole explorer (visualizations)"
 	},
-	"github/rmjarvis/TreeCorr": {
-	"id": "github/rmjarvis/TreeCorr",
-	"title": "github/rmjarvis/TreeCorr",
-	"url": " https://rseng.github.io/software/repository/github/rmjarvis/TreeCorr",
-	"content": "Code for efficiently computing 2-point and 3-point correlation functions. For documentation, go to"
+	"github/thiago-glissoi/FFF-Line-Segmentation": {
+	"id": "github/thiago-glissoi/FFF-Line-Segmentation",
+	"title": "github/thiago-glissoi/FFF-Line-Segmentation",
+	"url": " https://rseng.github.io/software/repository/github/thiago-glissoi/FFF-Line-Segmentation",
+	"content": "The fff_segmenter algorithm is used to segment an acoustic signal obtained from a first layer 3D print into multiple acoustic blocks related to specific geometrical elements of the printed part, such as contour lines, raster lines, and transition between raster lines."
 	},
-	"github/rmjarvis/Piff": {
-	"id": "github/rmjarvis/Piff",
-	"title": "github/rmjarvis/Piff",
-	"url": " https://rseng.github.io/software/repository/github/rmjarvis/Piff",
-	"content": "PSFs In the Full FOV.  A software package for modeling the point-spread function (PSF) across the full field of view (FOV).  Documentation:"
+	"github/fury-gl/fury": {
+	"id": "github/fury-gl/fury",
+	"title": "github/fury-gl/fury",
+	"url": " https://rseng.github.io/software/repository/github/fury-gl/fury",
+	"content": "FURY - Free Unified Rendering in pYthon."
 	},
-	"github/Xomics/ACTIONdemonstrator_workflow": {
-	"id": "github/Xomics/ACTIONdemonstrator_workflow",
-	"title": "github/Xomics/ACTIONdemonstrator_workflow",
-	"url": " https://rseng.github.io/software/repository/github/Xomics/ACTIONdemonstrator_workflow",
-	"content": "X-omics ACTION demonstrator multi-omics analysis workflow"
+	"github/ACTCollaboration/zCluster": {
+	"id": "github/ACTCollaboration/zCluster",
+	"title": "github/ACTCollaboration/zCluster",
+	"url": " https://rseng.github.io/software/repository/github/ACTCollaboration/zCluster",
+	"content": "A package for measuring galaxy cluster photometric redshifts using data from large public surveys."
 	},
-	"github/dynamics-of-stellar-systems/dynamite_release": {
-	"id": "github/dynamics-of-stellar-systems/dynamite_release",
-	"title": "github/dynamics-of-stellar-systems/dynamite_release",
-	"url": " https://rseng.github.io/software/repository/github/dynamics-of-stellar-systems/dynamite_release",
-	"content": "dynamics, age and metallicity indicators tracing evolution"
+	"github/snfactory/binaryoffset": {
+	"id": "github/snfactory/binaryoffset",
+	"title": "github/snfactory/binaryoffset",
+	"url": " https://rseng.github.io/software/repository/github/snfactory/binaryoffset",
+	"content": "Detecting and Correcting the Binary Offset Effect in CCDs"
 	},
-	"github/bbuchfink/diamond": {
-	"id": "github/bbuchfink/diamond",
-	"title": "github/bbuchfink/diamond",
-	"url": " https://rseng.github.io/software/repository/github/bbuchfink/diamond",
-	"content": "Accelerated BLAST compatible local sequence aligner."
+	"github/ogotoh/spaln": {
+	"id": "github/ogotoh/spaln",
+	"title": "github/ogotoh/spaln",
+	"url": " https://rseng.github.io/software/repository/github/ogotoh/spaln",
+	"content": "Genome mapping and spliced alignment of cDNA or amino acid sequences"
 	},
-	"github/GunzIvan28/rMAP": {
-	"id": "github/GunzIvan28/rMAP",
-	"title": "github/GunzIvan28/rMAP",
-	"url": " https://rseng.github.io/software/repository/github/GunzIvan28/rMAP",
-	"content": "Bacterial analysis Toolbox for profiling the Resistome of ESKAPE pathogens using WGS"
+	"github/ci-for-research/self-hosted-runners": {
+	"id": "github/ci-for-research/self-hosted-runners",
+	"title": "github/ci-for-research/self-hosted-runners",
+	"url": " https://rseng.github.io/software/repository/github/ci-for-research/self-hosted-runners",
+	"content": "Recipe to install and configure a GitHub action runner using Ansible"
 	},
-	"github/nhcrisp/ADBSat": {
-	"id": "github/nhcrisp/ADBSat",
-	"title": "github/nhcrisp/ADBSat",
-	"url": " https://rseng.github.io/software/repository/github/nhcrisp/ADBSat",
-	"content": "Aerodynamic Database for Satellites"
+	"github/lynx-x-ray-observatory/soxs": {
+	"id": "github/lynx-x-ray-observatory/soxs",
+	"title": "github/lynx-x-ray-observatory/soxs",
+	"url": " https://rseng.github.io/software/repository/github/lynx-x-ray-observatory/soxs",
+	"content": "SOXS: Simulated Observations of X-ray Sources"
 	},
-	"github/mzechmeister/serval": {
-	"id": "github/mzechmeister/serval",
-	"title": "github/mzechmeister/serval",
-	"url": " https://rseng.github.io/software/repository/github/mzechmeister/serval",
-	"content": "calculate radial velocities from stellar spectra"
+	"github/ruanjue/wtdbg2": {
+	"id": "github/ruanjue/wtdbg2",
+	"title": "github/ruanjue/wtdbg2",
+	"url": " https://rseng.github.io/software/repository/github/ruanjue/wtdbg2",
+	"content": "Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly"
 	},
-	"github/mzechmeister/viper": {
-	"id": "github/mzechmeister/viper",
-	"title": "github/mzechmeister/viper",
-	"url": " https://rseng.github.io/software/repository/github/mzechmeister/viper",
-	"content": "None"
+	"github/kendomaniac/docker4seq": {
+	"id": "github/kendomaniac/docker4seq",
+	"title": "github/kendomaniac/docker4seq",
+	"url": " https://rseng.github.io/software/repository/github/kendomaniac/docker4seq",
+	"content": "Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers."
 	},
-	"github/callendeprieto/ferre": {
-	"id": "github/callendeprieto/ferre",
-	"title": "github/callendeprieto/ferre",
-	"url": " https://rseng.github.io/software/repository/github/callendeprieto/ferre",
-	"content": "FERRE matches physical models to measurements"
+	"github/kendomaniac/rCASC": {
+	"id": "github/kendomaniac/rCASC",
+	"title": "github/kendomaniac/rCASC",
+	"url": " https://rseng.github.io/software/repository/github/kendomaniac/rCASC",
+	"content": "rCASC: reproducible Classification Analysis of Single Cell Sequencing Data"
 	},
-	"github/toros-astro/corral": {
-	"id": "github/toros-astro/corral",
-	"title": "github/toros-astro/corral",
-	"url": " https://rseng.github.io/software/repository/github/toros-astro/corral",
-	"content": "The Powerful Pipeline Framework"
+	"github/hongli-ma/RNANetMotif": {
+	"id": "github/hongli-ma/RNANetMotif",
+	"title": "github/hongli-ma/RNANetMotif",
+	"url": " https://rseng.github.io/software/repository/github/hongli-ma/RNANetMotif",
+	"content": "RNA structural motif finder"
 	},
-	"github/toros-astro/astroalign-legacy": {
-	"id": "github/toros-astro/astroalign-legacy",
-	"title": "github/toros-astro/astroalign-legacy",
-	"url": " https://rseng.github.io/software/repository/github/toros-astro/astroalign-legacy",
-	"content": "A tool to align astronomical images based on asterism matching"
+	"github/noatgnu/catapult": {
+	"id": "github/noatgnu/catapult",
+	"title": "github/noatgnu/catapult",
+	"url": " https://rseng.github.io/software/repository/github/noatgnu/catapult",
+	"content": "automated mass spec data search and analysis tool"
 	},
-	"github/e-mental-health/data-processing": {
-	"id": "github/e-mental-health/data-processing",
-	"title": "github/e-mental-health/data-processing",
-	"url": " https://rseng.github.io/software/repository/github/e-mental-health/data-processing",
-	"content": "Data processing scripts for the project What Works When for Whom?"
+	"github/goshng/polap": {
+	"id": "github/goshng/polap",
+	"title": "github/goshng/polap",
+	"url": " https://rseng.github.io/software/repository/github/goshng/polap",
+	"content": "Polap is a plant mtDNA assembly pipeline using Flye long-read assembler guided by organelle gene annotation."
 	},
-	"github/e-mental-health/orange-hackathon": {
-	"id": "github/e-mental-health/orange-hackathon",
-	"title": "github/e-mental-health/orange-hackathon",
-	"url": " https://rseng.github.io/software/repository/github/e-mental-health/orange-hackathon",
-	"content": "Orange modules for text processing in the project What Works When for Whom? "
+	"github/pmoulos/metaseqR2": {
+	"id": "github/pmoulos/metaseqR2",
+	"title": "github/pmoulos/metaseqR2",
+	"url": " https://rseng.github.io/software/repository/github/pmoulos/metaseqR2",
+	"content": "An R package for the analysis, meta-analysis and result reporting of RNA-Seq gene expression data - Next Generation!"
 	},
-	"github/Griffan/VerifyBamID": {
-	"id": "github/Griffan/VerifyBamID",
-	"title": "github/Griffan/VerifyBamID",
-	"url": " https://rseng.github.io/software/repository/github/Griffan/VerifyBamID",
-	"content": "VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method."
+	"github/jmd-dk/concept": {
+	"id": "github/jmd-dk/concept",
+	"title": "github/jmd-dk/concept",
+	"url": " https://rseng.github.io/software/repository/github/jmd-dk/concept",
+	"content": "COsmological N-body CodE in PyThon"
 	},
-	"github/AlexanderBartholomaeus/smORFer": {
-	"id": "github/AlexanderBartholomaeus/smORFer",
-	"title": "github/AlexanderBartholomaeus/smORFer",
-	"url": " https://rseng.github.io/software/repository/github/AlexanderBartholomaeus/smORFer",
+	"github/OSS-Lab/ChemChaste": {
+	"id": "github/OSS-Lab/ChemChaste",
+	"title": "github/OSS-Lab/ChemChaste",
+	"url": " https://rseng.github.io/software/repository/github/OSS-Lab/ChemChaste",
 	"content": "None"
 	},
-	"github/rambaut/jebl2": {
-	"id": "github/rambaut/jebl2",
-	"title": "github/rambaut/jebl2",
-	"url": " https://rseng.github.io/software/repository/github/rambaut/jebl2",
-	"content": "Automatically exported from code.google.com/p/jebl2"
+	"github/NctuICLab/PredCRP": {
+	"id": "github/NctuICLab/PredCRP",
+	"title": "github/NctuICLab/PredCRP",
+	"url": " https://rseng.github.io/software/repository/github/NctuICLab/PredCRP",
+	"content": "Predicting the regulatory role of CRP transcription factor in Escherichia coli "
 	},
-	"github/watts-dev/watts": {
-	"id": "github/watts-dev/watts",
-	"title": "github/watts-dev/watts",
-	"url": " https://rseng.github.io/software/repository/github/watts-dev/watts",
-	"content": "Workflow and Template Toolkit for Simulation (WATTS)"
+	"github/bxlab/metaWRAP": {
+	"id": "github/bxlab/metaWRAP",
+	"title": "github/bxlab/metaWRAP",
+	"url": " https://rseng.github.io/software/repository/github/bxlab/metaWRAP",
+	"content": "MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis"
 	},
-	"github/vallis/libstempo": {
-	"id": "github/vallis/libstempo",
-	"title": "github/vallis/libstempo",
-	"url": " https://rseng.github.io/software/repository/github/vallis/libstempo",
-	"content": "libstempo — a Python wrapper for tempo2"
+	"github/bxlab/bx-python": {
+	"id": "github/bxlab/bx-python",
+	"title": "github/bxlab/bx-python",
+	"url": " https://rseng.github.io/software/repository/github/bxlab/bx-python",
+	"content": "Tools for manipulating biological data, particularly multiple sequence alignments"
 	},
-	"github/vallis/mc3pta": {
-	"id": "github/vallis/mc3pta",
-	"title": "github/vallis/mc3pta",
-	"url": " https://rseng.github.io/software/repository/github/vallis/mc3pta",
-	"content": "Bayesian-inference tools for pulsar-timing-array data"
+	"github/cc646201081/CircSI-SSL": {
+	"id": "github/cc646201081/CircSI-SSL",
+	"title": "github/cc646201081/CircSI-SSL",
+	"url": " https://rseng.github.io/software/repository/github/cc646201081/CircSI-SSL",
+	"content": "None"
 	},
-	"github/fruzsinaagocs/oscode": {
-	"id": "github/fruzsinaagocs/oscode",
-	"title": "github/fruzsinaagocs/oscode",
-	"url": " https://rseng.github.io/software/repository/github/fruzsinaagocs/oscode",
-	"content": "Code for efficient solution of oscillatory ordinary differential equations"
+	"github/ExoplanetML/Nigraha": {
+	"id": "github/ExoplanetML/Nigraha",
+	"title": "github/ExoplanetML/Nigraha",
+	"url": " https://rseng.github.io/software/repository/github/ExoplanetML/Nigraha",
+	"content": "A neural network based pipeline to identify and evaluate planet candidates from TESS light curves."
 	},
-	"github/computational-chemical-biology/ChemWalker": {
-	"id": "github/computational-chemical-biology/ChemWalker",
-	"title": "github/computational-chemical-biology/ChemWalker",
-	"url": " https://rseng.github.io/software/repository/github/computational-chemical-biology/ChemWalker",
+	"github/timothyas/xesn": {
+	"id": "github/timothyas/xesn",
+	"title": "github/timothyas/xesn",
+	"url": " https://rseng.github.io/software/repository/github/timothyas/xesn",
+	"content": "Large scale Echo State Networks powered by xarray and dask."
+	},
+	"github/jvc2688/K2-CPM": {
+	"id": "github/jvc2688/K2-CPM",
+	"title": "github/jvc2688/K2-CPM",
+	"url": " https://rseng.github.io/software/repository/github/jvc2688/K2-CPM",
 	"content": "None"
 	},
-	"github/jakevdp/wpca": {
-	"id": "github/jakevdp/wpca",
-	"title": "github/jakevdp/wpca",
-	"url": " https://rseng.github.io/software/repository/github/jakevdp/wpca",
-	"content": "Weighted Principal Component Analysis (PCA) in Python"
+	"github/wathela/PyMerger": {
+	"id": "github/wathela/PyMerger",
+	"title": "github/wathela/PyMerger",
+	"url": " https://rseng.github.io/software/repository/github/wathela/PyMerger",
+	"content": "None"
 	},
-	"github/DJArmstrong/TransitSOM": {
-	"id": "github/DJArmstrong/TransitSOM",
-	"title": "github/DJArmstrong/TransitSOM",
-	"url": " https://rseng.github.io/software/repository/github/DJArmstrong/TransitSOM",
-	"content": "A Self-Organising Map for Kepler and K2 Transits"
+	"github/wathela/FIRST-CLASSIFIER": {
+	"id": "github/wathela/FIRST-CLASSIFIER",
+	"title": "github/wathela/FIRST-CLASSIFIER",
+	"url": " https://rseng.github.io/software/repository/github/wathela/FIRST-CLASSIFIER",
+	"content": "FIRST Classifier: Compact and Extended Radio Galaxies Classification using Deep Convolutional Neural Networks"
 	},
-	"github/amanchokshi/EMBERS": {
-	"id": "github/amanchokshi/EMBERS",
-	"title": "github/amanchokshi/EMBERS",
-	"url": " https://rseng.github.io/software/repository/github/amanchokshi/EMBERS",
-	"content": "Experimental Measurement of BEam Responses with Satellites"
+	"github/lkreidberg/batman": {
+	"id": "github/lkreidberg/batman",
+	"title": "github/lkreidberg/batman",
+	"url": " https://rseng.github.io/software/repository/github/lkreidberg/batman",
+	"content": "Fast transit light curves models in Python."
 	},
-	"github/igvteam/igv-reports": {
-	"id": "github/igvteam/igv-reports",
-	"title": "github/igvteam/igv-reports",
-	"url": " https://rseng.github.io/software/repository/github/igvteam/igv-reports",
-	"content": "Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files."
+	"github/bayzidlab/SAINT-Angle": {
+	"id": "github/bayzidlab/SAINT-Angle",
+	"title": "github/bayzidlab/SAINT-Angle",
+	"url": " https://rseng.github.io/software/repository/github/bayzidlab/SAINT-Angle",
+	"content": "This repository contains the official implementation of our paper titled SAINT-Angle: self-attention augmented inception-inside-inception network and transfer learning improve protein backbone torsion angles prediction."
 	},
-	"github/adriancorrendo/metrica": {
-	"id": "github/adriancorrendo/metrica",
-	"title": "github/adriancorrendo/metrica",
-	"url": " https://rseng.github.io/software/repository/github/adriancorrendo/metrica",
-	"content": "Prediction Performance Metrics"
+	"github/signaturescience/skater": {
+	"id": "github/signaturescience/skater",
+	"title": "github/signaturescience/skater",
+	"url": " https://rseng.github.io/software/repository/github/signaturescience/skater",
+	"content": "SKATE R Utilities"
 	},
-	"github/SPARC-FAIR-Codeathon/aqua": {
-	"id": "github/SPARC-FAIR-Codeathon/aqua",
-	"title": "github/SPARC-FAIR-Codeathon/aqua",
-	"url": " https://rseng.github.io/software/repository/github/SPARC-FAIR-Codeathon/aqua",
-	"content": "Advanced Query Architecture for the SPARC Portal."
+	"github/rdicosmo/parmap": {
+	"id": "github/rdicosmo/parmap",
+	"title": "github/rdicosmo/parmap",
+	"url": " https://rseng.github.io/software/repository/github/rdicosmo/parmap",
+	"content": "Parmap is a minimalistic library allowing to exploit multicore architecture for OCaml programs with minimal modifications."
 	},
-	"github/justinread/gravsphere": {
-	"id": "github/justinread/gravsphere",
-	"title": "github/justinread/gravsphere",
-	"url": " https://rseng.github.io/software/repository/github/justinread/gravsphere",
-	"content": "None"
+	"github/kcleal/gw": {
+	"id": "github/kcleal/gw",
+	"title": "github/kcleal/gw",
+	"url": " https://rseng.github.io/software/repository/github/kcleal/gw",
+	"content": "Genome browser and variant annotation"
 	},
-	"github/ModellingWebLab/chaste-codegen": {
-	"id": "github/ModellingWebLab/chaste-codegen",
-	"title": "github/ModellingWebLab/chaste-codegen",
-	"url": " https://rseng.github.io/software/repository/github/ModellingWebLab/chaste-codegen",
-	"content": "Code generation for Chaste based on cellmlmanip"
+	"github/javicarron/mtneedlet": {
+	"id": "github/javicarron/mtneedlet",
+	"title": "github/javicarron/mtneedlet",
+	"url": " https://rseng.github.io/software/repository/github/javicarron/mtneedlet",
+	"content": "This is a Python Package aimed at the use of needlets to filter spherical maps, detecting the maxima within the maps and analysing them using a multiple testing approach."
 	},
-	"github/SimCab-CHU/ifCNVR": {
-	"id": "github/SimCab-CHU/ifCNVR",
-	"title": "github/SimCab-CHU/ifCNVR",
-	"url": " https://rseng.github.io/software/repository/github/SimCab-CHU/ifCNVR",
-	"content": "ifCNV R package"
+	"github/javicarron/pynkowski": {
+	"id": "github/javicarron/pynkowski",
+	"title": "github/javicarron/pynkowski",
+	"url": " https://rseng.github.io/software/repository/github/javicarron/pynkowski",
+	"content": "Pynkowski is a Python package to compute Minkowski Functionals, as well as their expected values for different fields."
 	},
-	"github/brian-team/brian2": {
-	"id": "github/brian-team/brian2",
-	"title": "github/brian-team/brian2",
-	"url": " https://rseng.github.io/software/repository/github/brian-team/brian2",
-	"content": "Brian is a free, open source simulator for spiking neural networks. "
+	"github/kuadrat/data_slicer": {
+	"id": "github/kuadrat/data_slicer",
+	"title": "github/kuadrat/data_slicer",
+	"url": " https://rseng.github.io/software/repository/github/kuadrat/data_slicer",
+	"content": "None"
 	},
-	"github/hmtabernero/SteParSyn": {
-	"id": "github/hmtabernero/SteParSyn",
-	"title": "github/hmtabernero/SteParSyn",
-	"url": " https://rseng.github.io/software/repository/github/hmtabernero/SteParSyn",
-	"content": "SteParSyn is an automatic code used to infer stellar atmospheric parameters using the spectral synthesis method. "
+	"github/isaackd/wcloud": {
+	"id": "github/isaackd/wcloud",
+	"title": "github/isaackd/wcloud",
+	"url": " https://rseng.github.io/software/repository/github/isaackd/wcloud",
+	"content": "Create word clouds"
 	},
-	"github/flyaflya/causact": {
-	"id": "github/flyaflya/causact",
-	"title": "github/flyaflya/causact",
-	"url": " https://rseng.github.io/software/repository/github/flyaflya/causact",
-	"content": "causact:  R package to accelerate Bayesian analytics workflows."
+	"github/BitSeq/BitSeq": {
+	"id": "github/BitSeq/BitSeq",
+	"title": "github/BitSeq/BitSeq",
+	"url": " https://rseng.github.io/software/repository/github/BitSeq/BitSeq",
+	"content": "BitSeq code"
 	},
-	"github/fredstro/hilbertmodgroup": {
-	"id": "github/fredstro/hilbertmodgroup",
-	"title": "github/fredstro/hilbertmodgroup",
-	"url": " https://rseng.github.io/software/repository/github/fredstro/hilbertmodgroup",
-	"content": "Implementation of Hilbert modular groups using SageMath"
+	"github/SebastianBocquet/pygtc": {
+	"id": "github/SebastianBocquet/pygtc",
+	"title": "github/SebastianBocquet/pygtc",
+	"url": " https://rseng.github.io/software/repository/github/SebastianBocquet/pygtc",
+	"content": "Make a sweet giant triangle confusogram (GTC) plot"
 	},
-	"github/paumard/cubefit": {
-	"id": "github/paumard/cubefit",
-	"title": "github/paumard/cubefit",
-	"url": " https://rseng.github.io/software/repository/github/paumard/cubefit",
+	"github/mikecokina/elisa": {
+	"id": "github/mikecokina/elisa",
+	"title": "github/mikecokina/elisa",
+	"url": " https://rseng.github.io/software/repository/github/mikecokina/elisa",
 	"content": "None"
 	},
-	"github/m-a-d-n-e-s-s/madness": {
-	"id": "github/m-a-d-n-e-s-s/madness",
-	"title": "github/m-a-d-n-e-s-s/madness",
-	"url": " https://rseng.github.io/software/repository/github/m-a-d-n-e-s-s/madness",
-	"content": "Multiresolution Adaptive Numerical Environment for Scientific Simulation"
+	"github/N-Wouda/ALNS": {
+	"id": "github/N-Wouda/ALNS",
+	"title": "github/N-Wouda/ALNS",
+	"url": " https://rseng.github.io/software/repository/github/N-Wouda/ALNS",
+	"content": "Adaptive large neighbourhood search (and more!) in Python."
 	},
-	"github/BPSB/combine-p-values-discrete": {
-	"id": "github/BPSB/combine-p-values-discrete",
-	"title": "github/BPSB/combine-p-values-discrete",
-	"url": " https://rseng.github.io/software/repository/github/BPSB/combine-p-values-discrete",
-	"content": "None"
+	"github/berczik/phi-GPU-mole": {
+	"id": "github/berczik/phi-GPU-mole",
+	"title": "github/berczik/phi-GPU-mole",
+	"url": " https://rseng.github.io/software/repository/github/berczik/phi-GPU-mole",
+	"content": "Parallel Hermite Integration on GPU (Direct N-body on MOLE-8.5 cluster)"
 	},
-	"github/m-d-grunnill/MetaCast": {
-	"id": "github/m-d-grunnill/MetaCast",
-	"title": "github/m-d-grunnill/MetaCast",
-	"url": " https://rseng.github.io/software/repository/github/m-d-grunnill/MetaCast",
-	"content": "A package for broadcasting epidimiological and ecological models over metapopulations."
+	"github/Jashcraf/poke": {
+	"id": "github/Jashcraf/poke",
+	"title": "github/Jashcraf/poke",
+	"url": " https://rseng.github.io/software/repository/github/Jashcraf/poke",
+	"content": "Poke (pronounced poh-keh) is a Polarization Ray Tracing and Gaussian Beamlet module for Python"
 	},
-	"github/kpenev/poet": {
-	"id": "github/kpenev/poet",
-	"title": "github/kpenev/poet",
-	"url": " https://rseng.github.io/software/repository/github/kpenev/poet",
-	"content": "Documentation at:"
+	"github/atzberg/mlmod": {
+	"id": "github/atzberg/mlmod",
+	"title": "github/atzberg/mlmod",
+	"url": " https://rseng.github.io/software/repository/github/atzberg/mlmod",
+	"content": "Machine learning package for data-driven modeling and simulation in LAMMPs."
 	},
-	"github/ExoCTK/exoctk": {
-	"id": "github/ExoCTK/exoctk",
-	"title": "github/ExoCTK/exoctk",
-	"url": " https://rseng.github.io/software/repository/github/ExoCTK/exoctk",
-	"content": "The Exoplanet Characterization Tool Kit"
+	"github/abmantz/lrgs": {
+	"id": "github/abmantz/lrgs",
+	"title": "github/abmantz/lrgs",
+	"url": " https://rseng.github.io/software/repository/github/abmantz/lrgs",
+	"content": "Code to perform multivariate linear regression using Gibbs sampling"
 	},
-	"github/LiuJJ0327/CCPE": {
-	"id": "github/LiuJJ0327/CCPE",
-	"title": "github/LiuJJ0327/CCPE",
-	"url": " https://rseng.github.io/software/repository/github/LiuJJ0327/CCPE",
-	"content": "Cell cycle pseudotome estimation for scRNA-seq data"
+	"github/abmantz/lmc": {
+	"id": "github/abmantz/lmc",
+	"title": "github/abmantz/lmc",
+	"url": " https://rseng.github.io/software/repository/github/abmantz/lmc",
+	"content": "Logarithmantic Monte Carlo"
 	},
-	"github/alexdobin/STAR": {
-	"id": "github/alexdobin/STAR",
-	"title": "github/alexdobin/STAR",
-	"url": " https://rseng.github.io/software/repository/github/alexdobin/STAR",
-	"content": "RNA-seq aligner"
+	"github/abmantz/rgw": {
+	"id": "github/abmantz/rgw",
+	"title": "github/abmantz/rgw",
+	"url": " https://rseng.github.io/software/repository/github/abmantz/rgw",
+	"content": "A lightweight R-language implementation of the affine-invariant sampling method of Goodman &amp; Weare (2010)"
 	},
-	"github/v-morello/riptide": {
-	"id": "github/v-morello/riptide",
-	"title": "github/v-morello/riptide",
-	"url": " https://rseng.github.io/software/repository/github/v-morello/riptide",
-	"content": "Pulsar searching with the Fast Folding Algorithm (FFA)"
+	"github/SevgiAkten/pycellga": {
+	"id": "github/SevgiAkten/pycellga",
+	"title": "github/SevgiAkten/pycellga",
+	"url": " https://rseng.github.io/software/repository/github/SevgiAkten/pycellga",
+	"content": "Cellular Genetic Algorithms in Python."
 	},
-	"github/v-morello/clfd": {
-	"id": "github/v-morello/clfd",
-	"title": "github/v-morello/clfd",
-	"url": " https://rseng.github.io/software/repository/github/v-morello/clfd",
-	"content": " Smart RFI removal algorithms to be used on folded pulsar search and timing data"
+	"github/delphes/delphes": {
+	"id": "github/delphes/delphes",
+	"title": "github/delphes/delphes",
+	"url": " https://rseng.github.io/software/repository/github/delphes/delphes",
+	"content": "A framework for fast simulation of a generic collider experiment"
 	},
-	"github/v-morello/iqrm": {
-	"id": "github/v-morello/iqrm",
-	"title": "github/v-morello/iqrm",
-	"url": " https://rseng.github.io/software/repository/github/v-morello/iqrm",
-	"content": "A minimal implementation of the IQRM interference flagging algorithm for radio pulsar and transient searches"
+	"github/nitadori/SCF-FDPS": {
+	"id": "github/nitadori/SCF-FDPS",
+	"title": "github/nitadori/SCF-FDPS",
+	"url": " https://rseng.github.io/software/repository/github/nitadori/SCF-FDPS",
+	"content": "None"
 	},
-	"github/mms-fcul/PypKa": {
-	"id": "github/mms-fcul/PypKa",
-	"title": "github/mms-fcul/PypKa",
-	"url": " https://rseng.github.io/software/repository/github/mms-fcul/PypKa",
-	"content": "A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism"
+	"github/orcasgit/python-fitbit": {
+	"id": "github/orcasgit/python-fitbit",
+	"title": "github/orcasgit/python-fitbit",
+	"url": " https://rseng.github.io/software/repository/github/orcasgit/python-fitbit",
+	"content": "Fitbit API Python Client Implementation"
 	},
-	"github/GreenBankObservatory/gbtgridder": {
-	"id": "github/GreenBankObservatory/gbtgridder",
-	"title": "github/GreenBankObservatory/gbtgridder",
-	"url": " https://rseng.github.io/software/repository/github/GreenBankObservatory/gbtgridder",
-	"content": "A stand-alone spectral gridder and imager for the Green Bank Telescope"
+	"github/BritishGeologicalSurvey/pyvolcans": {
+	"id": "github/BritishGeologicalSurvey/pyvolcans",
+	"title": "github/BritishGeologicalSurvey/pyvolcans",
+	"url": " https://rseng.github.io/software/repository/github/BritishGeologicalSurvey/pyvolcans",
+	"content": "Python tool to identify analogue volcanoes via VOLCANS (https://doi.org/10.1007/s00445-019-1336-3)"
 	},
-	"github/relipmoc/skewer": {
-	"id": "github/relipmoc/skewer",
-	"title": "github/relipmoc/skewer",
-	"url": " https://rseng.github.io/software/repository/github/relipmoc/skewer",
-	"content": "implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming.  It is specially designed for processing next-generation sequencing (NGS) paired-end sequences."
+	"github/stevenweaver/seqcomplexity": {
+	"id": "github/stevenweaver/seqcomplexity",
+	"title": "github/stevenweaver/seqcomplexity",
+	"url": " https://rseng.github.io/software/repository/github/stevenweaver/seqcomplexity",
+	"content": "Rust package that calculates sequence complexity from FastQ file"
 	},
-	"github/youngjookim/sdr": {
-	"id": "github/youngjookim/sdr",
-	"title": "github/youngjookim/sdr",
-	"url": " https://rseng.github.io/software/repository/github/youngjookim/sdr",
+	"github/HWang-Summit/HCGrid": {
+	"id": "github/HWang-Summit/HCGrid",
+	"title": "github/HWang-Summit/HCGrid",
+	"url": " https://rseng.github.io/software/repository/github/HWang-Summit/HCGrid",
+	"content": "HCGrid is a convolution-based gridding framework for radio astronomy on hybrid computing environments"
+	},
+	"github/BlauGroup/RNMC": {
+	"id": "github/BlauGroup/RNMC",
+	"title": "github/BlauGroup/RNMC",
+	"url": " https://rseng.github.io/software/repository/github/BlauGroup/RNMC",
 	"content": "None"
 	},
-	"github/yesint/EnCurv": {
-	"id": "github/yesint/EnCurv",
-	"title": "github/yesint/EnCurv",
-	"url": " https://rseng.github.io/software/repository/github/yesint/EnCurv",
-	"content": "Tools for maintaining predefined membrane curvature in MD simulations"
+	"github/STEllAR-GROUP/hpx": {
+	"id": "github/STEllAR-GROUP/hpx",
+	"title": "github/STEllAR-GROUP/hpx",
+	"url": " https://rseng.github.io/software/repository/github/STEllAR-GROUP/hpx",
+	"content": "The C++ Standard Library for Parallelism and Concurrency"
 	},
-	"github/antoinemarchal/ROHSA": {
-	"id": "github/antoinemarchal/ROHSA",
-	"title": "github/antoinemarchal/ROHSA",
-	"url": " https://rseng.github.io/software/repository/github/antoinemarchal/ROHSA",
-	"content": "Regularized Optimization for Hyper-Spectral Analysis"
+	"github/STEllAR-GROUP/octotiger": {
+	"id": "github/STEllAR-GROUP/octotiger",
+	"title": "github/STEllAR-GROUP/octotiger",
+	"url": " https://rseng.github.io/software/repository/github/STEllAR-GROUP/octotiger",
+	"content": "Astrophysics program simulating the evolution of star systems based on the fast multipole method on adaptive Octrees"
 	},
-	"github/cbg-ethz/LolliPop": {
-	"id": "github/cbg-ethz/LolliPop",
-	"title": "github/cbg-ethz/LolliPop",
-	"url": " https://rseng.github.io/software/repository/github/cbg-ethz/LolliPop",
-	"content": "Deconvolution for Wastewater Genomics"
+	"github/mlpack/mlpack": {
+	"id": "github/mlpack/mlpack",
+	"title": "github/mlpack/mlpack",
+	"url": " https://rseng.github.io/software/repository/github/mlpack/mlpack",
+	"content": "mlpack: a scalable C++ machine learning library -- "
 	},
-	"github/cbg-ethz/shorah": {
-	"id": "github/cbg-ethz/shorah",
-	"title": "github/cbg-ethz/shorah",
-	"url": " https://rseng.github.io/software/repository/github/cbg-ethz/shorah",
-	"content": "Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)"
+	"github/max0x7ba/atomic_queue": {
+	"id": "github/max0x7ba/atomic_queue",
+	"title": "github/max0x7ba/atomic_queue",
+	"url": " https://rseng.github.io/software/repository/github/max0x7ba/atomic_queue",
+	"content": "C++ lockless queue."
 	},
-	"github/cbg-ethz/PredictHaplo": {
-	"id": "github/cbg-ethz/PredictHaplo",
-	"title": "github/cbg-ethz/PredictHaplo",
-	"url": " https://rseng.github.io/software/repository/github/cbg-ethz/PredictHaplo",
-	"content": "This software aims at reconstructing haplotypes from next-generation sequencing data."
+	"github/bshoshany/OGRe": {
+	"id": "github/bshoshany/OGRe",
+	"title": "github/bshoshany/OGRe",
+	"url": " https://rseng.github.io/software/repository/github/bshoshany/OGRe",
+	"content": "An object-oriented general relativity package for Mathematica."
 	},
-	"github/cbg-ethz/V-pipe": {
-	"id": "github/cbg-ethz/V-pipe",
-	"title": "github/cbg-ethz/V-pipe",
-	"url": " https://rseng.github.io/software/repository/github/cbg-ethz/V-pipe",
-	"content": "V-pipe is a pipeline designed for analysing NGS data of short viral genomes"
+	"github/afd-illinois/grim": {
+	"id": "github/afd-illinois/grim",
+	"title": "github/afd-illinois/grim",
+	"url": " https://rseng.github.io/software/repository/github/afd-illinois/grim",
+	"content": "General Relativistic Implicit Magnetohydrodynamics"
+	},
+	"github/szymon-datalions/pyinterpolate": {
+	"id": "github/szymon-datalions/pyinterpolate",
+	"title": "github/szymon-datalions/pyinterpolate",
+	"url": " https://rseng.github.io/software/repository/github/szymon-datalions/pyinterpolate",
+	"content": "Package with spatial analysis and spatial prediction tools"
+	},
+	"github/eblur/dust": {
+	"id": "github/eblur/dust",
+	"title": "github/eblur/dust",
+	"url": " https://rseng.github.io/software/repository/github/eblur/dust",
+	"content": "For calculating dust scattering and extinction"
+	},
+	"github/YSOVAR/YSOVAR": {
+	"id": "github/YSOVAR/YSOVAR",
+	"title": "github/YSOVAR/YSOVAR",
+	"url": " https://rseng.github.io/software/repository/github/YSOVAR/YSOVAR",
+	"content": "Analyze YSOVAR lightcurves"
 	},
-	"github/cbg-ethz/smallgenomeutilities": {
-	"id": "github/cbg-ethz/smallgenomeutilities",
-	"title": "github/cbg-ethz/smallgenomeutilities",
-	"url": " https://rseng.github.io/software/repository/github/cbg-ethz/smallgenomeutilities",
-	"content": "smallgenomeutilities is a collection of Python scripts to convert alignments between different reference genomes."
+	"github/ahudde/greeks": {
+	"id": "github/ahudde/greeks",
+	"title": "github/ahudde/greeks",
+	"url": " https://rseng.github.io/software/repository/github/ahudde/greeks",
+	"content": "Sensitivities of Prices of Financial Options and Implied Volatilites"
 	},
-	"github/cedrus-opensource/pyxid": {
-	"id": "github/cedrus-opensource/pyxid",
-	"title": "github/cedrus-opensource/pyxid",
-	"url": " https://rseng.github.io/software/repository/github/cedrus-opensource/pyxid",
-	"content": "Pure python library for communicating with Cedrus XID devices"
+	"github/soichiro-hattori/unpopular": {
+	"id": "github/soichiro-hattori/unpopular",
+	"title": "github/soichiro-hattori/unpopular",
+	"url": " https://rseng.github.io/software/repository/github/soichiro-hattori/unpopular",
+	"content": "An implementation of the Causal Pixel Model (CPM) for TESS data."
 	},
-	"github/aschafu/PSSH2": {
-	"id": "github/aschafu/PSSH2",
-	"title": "github/aschafu/PSSH2",
-	"url": " https://rseng.github.io/software/repository/github/aschafu/PSSH2",
-	"content": "Scripts for generating pssh2"
+	"github/Joost987/MONDPMesh": {
+	"id": "github/Joost987/MONDPMesh",
+	"title": "github/Joost987/MONDPMesh",
+	"url": " https://rseng.github.io/software/repository/github/Joost987/MONDPMesh",
+	"content": "Particle mesh code for modified Newtonian dynamics simulations"
 	},
-	"github/sachsmc/cosinor": {
-	"id": "github/sachsmc/cosinor",
-	"title": "github/sachsmc/cosinor",
-	"url": " https://rseng.github.io/software/repository/github/sachsmc/cosinor",
-	"content": "R package for estimation and prediction of the cosinor model for periodic data"
+	"github/vsbuffalo/scythe": {
+	"id": "github/vsbuffalo/scythe",
+	"title": "github/vsbuffalo/scythe",
+	"url": " https://rseng.github.io/software/repository/github/vsbuffalo/scythe",
+	"content": "A 3&#39;-end adapter contaminant trimmer"
 	},
-	"github/yuansh3354/CaSee": {
-	"id": "github/yuansh3354/CaSee",
-	"title": "github/yuansh3354/CaSee",
-	"url": " https://rseng.github.io/software/repository/github/yuansh3354/CaSee",
+	"github/IanHeywood/pony3d": {
+	"id": "github/IanHeywood/pony3d",
+	"title": "github/IanHeywood/pony3d",
+	"url": " https://rseng.github.io/software/repository/github/IanHeywood/pony3d",
 	"content": "None"
 	},
-	"github/christopher-vollmers/C3POa": {
-	"id": "github/christopher-vollmers/C3POa",
-	"title": "github/christopher-vollmers/C3POa",
-	"url": " https://rseng.github.io/software/repository/github/christopher-vollmers/C3POa",
-	"content": "(Concatemeric Consensus Caller with Partial Order alignments) is a computational pipeline for calling consensi on R2C2 nanopore data."
+	"github/IanHeywood/oxkat": {
+	"id": "github/IanHeywood/oxkat",
+	"title": "github/IanHeywood/oxkat",
+	"url": " https://rseng.github.io/software/repository/github/IanHeywood/oxkat",
+	"content": "MeerKAT calibration and imaging scripts"
 	},
-	"github/cmgcds/fastvpinns": {
-	"id": "github/cmgcds/fastvpinns",
-	"title": "github/cmgcds/fastvpinns",
-	"url": " https://rseng.github.io/software/repository/github/cmgcds/fastvpinns",
-	"content": "FastVPINNs - A tensor-driven acceleration of VPINNs for complex geometries"
+	"github/williamjameshandley/fgivenx": {
+	"id": "github/williamjameshandley/fgivenx",
+	"title": "github/williamjameshandley/fgivenx",
+	"url": " https://rseng.github.io/software/repository/github/williamjameshandley/fgivenx",
+	"content": "Functional Posterior Plotter"
 	},
-	"github/opengeos/HyperCoast": {
-	"id": "github/opengeos/HyperCoast",
-	"title": "github/opengeos/HyperCoast",
-	"url": " https://rseng.github.io/software/repository/github/opengeos/HyperCoast",
-	"content": "A Python Package for Visualizing and Analyzing Hyperspectral Data in Coastal Environments"
+	"github/williamjameshandley/anesthetic": {
+	"id": "github/williamjameshandley/anesthetic",
+	"title": "github/williamjameshandley/anesthetic",
+	"url": " https://rseng.github.io/software/repository/github/williamjameshandley/anesthetic",
+	"content": "Nested Sampling post-processing and plotting"
 	},
-	"github/opengeos/segment-geospatial": {
-	"id": "github/opengeos/segment-geospatial",
-	"title": "github/opengeos/segment-geospatial",
-	"url": " https://rseng.github.io/software/repository/github/opengeos/segment-geospatial",
-	"content": "A Python package for segmenting geospatial data with the Segment Anything Model (SAM)"
+	"github/phil-mansfield/gotetra": {
+	"id": "github/phil-mansfield/gotetra",
+	"title": "github/phil-mansfield/gotetra",
+	"url": " https://rseng.github.io/software/repository/github/phil-mansfield/gotetra",
+	"content": "A Go-based tracking of cosmic velocity fields through the use of tetrahedra"
 	},
-	"github/emerge-erc/ALminer": {
-	"id": "github/emerge-erc/ALminer",
-	"title": "github/emerge-erc/ALminer",
-	"url": " https://rseng.github.io/software/repository/github/emerge-erc/ALminer",
-	"content": "ALminer: ALMA archive mining and visualization toolkit"
+	"github/Autostronomy/AstroPhot": {
+	"id": "github/Autostronomy/AstroPhot",
+	"title": "github/Autostronomy/AstroPhot",
+	"url": " https://rseng.github.io/software/repository/github/Autostronomy/AstroPhot",
+	"content": "A fast, flexible, automated, and differentiable astronomical image modelling tool for precise parallel multi-wavelength photometry"
 	},
-	"github/A-Davies/LensCNN": {
-	"id": "github/A-Davies/LensCNN",
-	"title": "github/A-Davies/LensCNN",
-	"url": " https://rseng.github.io/software/repository/github/A-Davies/LensCNN",
-	"content": "A Python built Convolutional Neural Network to classify simulated images as containing a gravitational lens or not."
+	"github/SISPO-developers/sispo": {
+	"id": "github/SISPO-developers/sispo",
+	"title": "github/SISPO-developers/sispo",
+	"url": " https://rseng.github.io/software/repository/github/SISPO-developers/sispo",
+	"content": "Space Imaging Simulator for Proximity Operations (SISPO)"
 	},
-	"github/fkoehlin/montepython_2cosmos_public": {
-	"id": "github/fkoehlin/montepython_2cosmos_public",
-	"title": "github/fkoehlin/montepython_2cosmos_public",
-	"url": " https://rseng.github.io/software/repository/github/fkoehlin/montepython_2cosmos_public",
-	"content": "Public repository for the Monte Python Code modified to work with two independent cosmological parameter sets and independent cosmological calculations per likelihood."
+	"github/wasserman-group/pyCADMium": {
+	"id": "github/wasserman-group/pyCADMium",
+	"title": "github/wasserman-group/pyCADMium",
+	"url": " https://rseng.github.io/software/repository/github/wasserman-group/pyCADMium",
+	"content": "Solve the Kohn-Sham equations on a prolate spheroidal grid. "
 	},
-	"github/mpi4py/shmem4py": {
-	"id": "github/mpi4py/shmem4py",
-	"title": "github/mpi4py/shmem4py",
-	"url": " https://rseng.github.io/software/repository/github/mpi4py/shmem4py",
-	"content": "None"
+	"github/cabb99/open3spn2": {
+	"id": "github/cabb99/open3spn2",
+	"title": "github/cabb99/open3spn2",
+	"url": " https://rseng.github.io/software/repository/github/cabb99/open3spn2",
+	"content": "An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM"
 	},
-	"github/ProSolo/prosolo": {
-	"id": "github/ProSolo/prosolo",
-	"title": "github/ProSolo/prosolo",
-	"url": " https://rseng.github.io/software/repository/github/ProSolo/prosolo",
-	"content": "ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos."
+	"github/dib-lab/dammit": {
+	"id": "github/dib-lab/dammit",
+	"title": "github/dib-lab/dammit",
+	"url": " https://rseng.github.io/software/repository/github/dib-lab/dammit",
+	"content": "just annotate it, dammit!"
 	},
-	"github/3fon3fonov/exostriker": {
-	"id": "github/3fon3fonov/exostriker",
-	"title": "github/3fon3fonov/exostriker",
-	"url": " https://rseng.github.io/software/repository/github/3fon3fonov/exostriker",
-	"content": "Transit and Radial velocity Interactive Fitting tool for Orbital analysis and N-body simulations: The Exo-Striker"
+	"github/dib-lab/sourmash": {
+	"id": "github/dib-lab/sourmash",
+	"title": "github/dib-lab/sourmash",
+	"url": " https://rseng.github.io/software/repository/github/dib-lab/sourmash",
+	"content": "Quickly search, compare, and analyze genomic and metagenomic data sets."
 	},
-	"github/atomneb/AtomNeb-py": {
-	"id": "github/atomneb/AtomNeb-py",
-	"title": "github/atomneb/AtomNeb-py",
-	"url": " https://rseng.github.io/software/repository/github/atomneb/AtomNeb-py",
-	"content": "AtomNeb - Python Package for Atomic Data of Ionized Nebulae"
+	"github/dib-lab/TheGreatGenotyper": {
+	"id": "github/dib-lab/TheGreatGenotyper",
+	"title": "github/dib-lab/TheGreatGenotyper",
+	"url": " https://rseng.github.io/software/repository/github/dib-lab/TheGreatGenotyper",
+	"content": "None"
 	},
-	"github/kevin218/Eureka": {
-	"id": "github/kevin218/Eureka",
-	"title": "github/kevin218/Eureka",
-	"url": " https://rseng.github.io/software/repository/github/kevin218/Eureka",
-	"content": "Eureka! is a data reduction and analysis pipeline intended for time-series observations with the James Webb Space Telescope (JWST)."
+	"github/gigjozsa/tirific": {
+	"id": "github/gigjozsa/tirific",
+	"title": "github/gigjozsa/tirific",
+	"url": " https://rseng.github.io/software/repository/github/gigjozsa/tirific",
+	"content": "Tilted-Ring-Fitting-Code"
 	},
-	"github/rhenanbartels/hrv": {
-	"id": "github/rhenanbartels/hrv",
-	"title": "github/rhenanbartels/hrv",
-	"url": " https://rseng.github.io/software/repository/github/rhenanbartels/hrv",
-	"content": "A Python package for heart rate variability analysis"
+	"github/SegataLab/lefse": {
+	"id": "github/SegataLab/lefse",
+	"title": "github/SegataLab/lefse",
+	"url": " https://rseng.github.io/software/repository/github/SegataLab/lefse",
+	"content": "determine features of organisms, clades, taxonomic units, genes"
 	},
-	"github/BDI-pathogens/OpenABM-Covid19-model-paper": {
-	"id": "github/BDI-pathogens/OpenABM-Covid19-model-paper",
-	"title": "github/BDI-pathogens/OpenABM-Covid19-model-paper",
-	"url": " https://rseng.github.io/software/repository/github/BDI-pathogens/OpenABM-Covid19-model-paper",
-	"content": "Figures for the paper describing the OpenABM-Covid19 model"
+	"github/robdjeff/eagles": {
+	"id": "github/robdjeff/eagles",
+	"title": "github/robdjeff/eagles",
+	"url": " https://rseng.github.io/software/repository/github/robdjeff/eagles",
+	"content": "Estimating AGes from Lithium Equivalent widthS"
 	},
-	"github/danielkoll/PyRADS": {
-	"id": "github/danielkoll/PyRADS",
-	"title": "github/danielkoll/PyRADS",
-	"url": " https://rseng.github.io/software/repository/github/danielkoll/PyRADS",
-	"content": "A line-by-line longwave radiation code for planetary atmospheres."
+	"github/hsci-r/finnish-media-scrapers": {
+	"id": "github/hsci-r/finnish-media-scrapers",
+	"title": "github/hsci-r/finnish-media-scrapers",
+	"url": " https://rseng.github.io/software/repository/github/hsci-r/finnish-media-scrapers",
+	"content": "Scrapers for extracting articles from major Finnish journalistic media outlets"
 	},
-	"github/danielkoll/tidally-locked-coordinates": {
-	"id": "github/danielkoll/tidally-locked-coordinates",
-	"title": "github/danielkoll/tidally-locked-coordinates",
-	"url": " https://rseng.github.io/software/repository/github/danielkoll/tidally-locked-coordinates",
-	"content": "Scripts for transforming GCM output into a tidally locked coordinate system."
+	"github/ptiede/Comrade.jl": {
+	"id": "github/ptiede/Comrade.jl",
+	"title": "github/ptiede/Comrade.jl",
+	"url": " https://rseng.github.io/software/repository/github/ptiede/Comrade.jl",
+	"content": "None"
 	},
-	"github/lumen-org/lumen": {
-	"id": "github/lumen-org/lumen",
-	"title": "github/lumen-org/lumen",
-	"url": " https://rseng.github.io/software/repository/github/lumen-org/lumen",
-	"content": "Interactive web application for the exploration, comparision and validation of probability models and its data"
+	"github/marieBvr/virAnnot": {
+	"id": "github/marieBvr/virAnnot",
+	"title": "github/marieBvr/virAnnot",
+	"url": " https://rseng.github.io/software/repository/github/marieBvr/virAnnot",
+	"content": "None"
 	},
-	"github/nextgenusfs/funannotate": {
-	"id": "github/nextgenusfs/funannotate",
-	"title": "github/nextgenusfs/funannotate",
-	"url": " https://rseng.github.io/software/repository/github/nextgenusfs/funannotate",
-	"content": "Eukaryotic Genome Annotation Pipeline"
+	"github/oschwengers/referenceseeker": {
+	"id": "github/oschwengers/referenceseeker",
+	"title": "github/oschwengers/referenceseeker",
+	"url": " https://rseng.github.io/software/repository/github/oschwengers/referenceseeker",
+	"content": "Rapid determination of appropriate reference genomes."
 	},
-	"github/nextgenusfs/amptk": {
-	"id": "github/nextgenusfs/amptk",
-	"title": "github/nextgenusfs/amptk",
-	"url": " https://rseng.github.io/software/repository/github/nextgenusfs/amptk",
-	"content": "AMPtk: Amplicon ToolKit for NGS data (formally UFITS)"
+	"github/oschwengers/platon": {
+	"id": "github/oschwengers/platon",
+	"title": "github/oschwengers/platon",
+	"url": " https://rseng.github.io/software/repository/github/oschwengers/platon",
+	"content": "Identification &amp; characterization of bacterial plasmid-borne contigs from short-read draft assemblies."
 	},
-	"github/mwoodbri/MRIdb": {
-	"id": "github/mwoodbri/MRIdb",
-	"title": "github/mwoodbri/MRIdb",
-	"url": " https://rseng.github.io/software/repository/github/mwoodbri/MRIdb",
-	"content": "An end-to-end data management system for MRI"
+	"github/oschwengers/bakta": {
+	"id": "github/oschwengers/bakta",
+	"title": "github/oschwengers/bakta",
+	"url": " https://rseng.github.io/software/repository/github/oschwengers/bakta",
+	"content": "Rapid &amp; standardized annotation of bacterial genomes &amp; plasmids"
 	},
-	"github/drphilmarshall/Pangloss": {
-	"id": "github/drphilmarshall/Pangloss",
-	"title": "github/drphilmarshall/Pangloss",
-	"url": " https://rseng.github.io/software/repository/github/drphilmarshall/Pangloss",
-	"content": "Line of sight mass reconstruction in the Universe"
+	"github/genomicepidemiology/ARGprofiler": {
+	"id": "github/genomicepidemiology/ARGprofiler",
+	"title": "github/genomicepidemiology/ARGprofiler",
+	"url": " https://rseng.github.io/software/repository/github/genomicepidemiology/ARGprofiler",
+	"content": "A pipeline for for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets"
 	},
-	"github/drphilmarshall/HumVI": {
-	"id": "github/drphilmarshall/HumVI",
-	"title": "github/drphilmarshall/HumVI",
-	"url": " https://rseng.github.io/software/repository/github/drphilmarshall/HumVI",
-	"content": "Color composite image creation, mostly following the Lupton, Wherry et al (2004) algorithm."
+	"github/comprna/SUPPA": {
+	"id": "github/comprna/SUPPA",
+	"title": "github/comprna/SUPPA",
+	"url": " https://rseng.github.io/software/repository/github/comprna/SUPPA",
+	"content": " SUPPA2: Fast quantification of differential splicing "
 	},
-	"github/chemprop/chemprop_benchmark": {
-	"id": "github/chemprop/chemprop_benchmark",
-	"title": "github/chemprop/chemprop_benchmark",
-	"url": " https://rseng.github.io/software/repository/github/chemprop/chemprop_benchmark",
-	"content": " Chemprop benchmarking scripts and data"
+	"github/comprna/reorientexpress": {
+	"id": "github/comprna/reorientexpress",
+	"title": "github/comprna/reorientexpress",
+	"url": " https://rseng.github.io/software/repository/github/comprna/reorientexpress",
+	"content": "Transcriptome long-read orientation with Deep Learning"
 	},
-	"github/SNEWS2/snewpy": {
-	"id": "github/SNEWS2/snewpy",
-	"title": "github/SNEWS2/snewpy",
-	"url": " https://rseng.github.io/software/repository/github/SNEWS2/snewpy",
-	"content": "collection of models from the community in common format for use by the SNEWS teams"
+	"github/cbrueffer/tophat-recondition": {
+	"id": "github/cbrueffer/tophat-recondition",
+	"title": "github/cbrueffer/tophat-recondition",
+	"url": " https://rseng.github.io/software/repository/github/cbrueffer/tophat-recondition",
+	"content": "Post-processor for TopHat unmapped.bam files making them useable by downstream software."
 	},
-	"github/EnergyModelsX/EnergyModelsBase.jl": {
-	"id": "github/EnergyModelsX/EnergyModelsBase.jl",
-	"title": "github/EnergyModelsX/EnergyModelsBase.jl",
-	"url": " https://rseng.github.io/software/repository/github/EnergyModelsX/EnergyModelsBase.jl",
-	"content": "None"
+	"github/homerjed/sbiax": {
+	"id": "github/homerjed/sbiax",
+	"title": "github/homerjed/sbiax",
+	"url": " https://rseng.github.io/software/repository/github/homerjed/sbiax",
+	"content": "Fast, lightweight and parallelised simulation-based inference in JAX."
 	},
-	"github/surhh/nfitsview": {
-	"id": "github/surhh/nfitsview",
-	"title": "github/surhh/nfitsview",
-	"url": " https://rseng.github.io/software/repository/github/surhh/nfitsview",
-	"content": "nFITSview - A simple and user-friendly FITS image viewer"
+	"github/legacysurvey/unwise_psf": {
+	"id": "github/legacysurvey/unwise_psf",
+	"title": "github/legacysurvey/unwise_psf",
+	"url": " https://rseng.github.io/software/repository/github/legacysurvey/unwise_psf",
+	"content": "per-coadd PSF for unWISE forced photometry"
 	},
-	"github/wilsonrljr/sysidentpy": {
-	"id": "github/wilsonrljr/sysidentpy",
-	"title": "github/wilsonrljr/sysidentpy",
-	"url": " https://rseng.github.io/software/repository/github/wilsonrljr/sysidentpy",
-	"content": "A Python package for System Identification using NARMAX models"
+	"github/iterize/tenta": {
+	"id": "github/iterize/tenta",
+	"title": "github/iterize/tenta",
+	"url": " https://rseng.github.io/software/repository/github/iterize/tenta",
+	"content": "Manage your sensors remotely and in real-time"
 	},
-	"github/cvjena/JeFaPaTo": {
-	"id": "github/cvjena/JeFaPaTo",
-	"title": "github/cvjena/JeFaPaTo",
-	"url": " https://rseng.github.io/software/repository/github/cvjena/JeFaPaTo",
-	"content": "JeFaPaTo - A tool for the analysis of facial features"
+	"github/stemangiola/tidyHeatmap": {
+	"id": "github/stemangiola/tidyHeatmap",
+	"title": "github/stemangiola/tidyHeatmap",
+	"url": " https://rseng.github.io/software/repository/github/stemangiola/tidyHeatmap",
+	"content": "Draw heatmap simply using a tidy data frame"
 	},
-	"github/AdmiralenOla/Scoary": {
-	"id": "github/AdmiralenOla/Scoary",
-	"title": "github/AdmiralenOla/Scoary",
-	"url": " https://rseng.github.io/software/repository/github/AdmiralenOla/Scoary",
-	"content": "Pan-genome wide association studies"
+	"github/TommasoRonconi/scampy": {
+	"id": "github/TommasoRonconi/scampy",
+	"title": "github/TommasoRonconi/scampy",
+	"url": " https://rseng.github.io/software/repository/github/TommasoRonconi/scampy",
+	"content": "A Python API for Sub-halo Clustering and Abundance Matching"
 	},
-	"github/cconroy20/alf": {
-	"id": "github/cconroy20/alf",
-	"title": "github/cconroy20/alf",
-	"url": " https://rseng.github.io/software/repository/github/cconroy20/alf",
-	"content": "Absorption Line Fitter"
+	"github/online-ml/deep-river": {
+	"id": "github/online-ml/deep-river",
+	"title": "github/online-ml/deep-river",
+	"url": " https://rseng.github.io/software/repository/github/online-ml/deep-river",
+	"content": "None"
 	},
-	"github/cconroy20/fsps": {
-	"id": "github/cconroy20/fsps",
-	"title": "github/cconroy20/fsps",
-	"url": " https://rseng.github.io/software/repository/github/cconroy20/fsps",
-	"content": "Flexible Stellar Population Synthesis"
+	"github/karlotness/adrt": {
+	"id": "github/karlotness/adrt",
+	"title": "github/karlotness/adrt",
+	"url": " https://rseng.github.io/software/repository/github/karlotness/adrt",
+	"content": "Fast approximate discrete Radon transform for NumPy arrays"
 	},
-	"github/opengenomebrowser/opengenomebrowser": {
-	"id": "github/opengenomebrowser/opengenomebrowser",
-	"title": "github/opengenomebrowser/opengenomebrowser",
-	"url": " https://rseng.github.io/software/repository/github/opengenomebrowser/opengenomebrowser",
+	"github/vishwas1984/LaplaceInterpolation.jl": {
+	"id": "github/vishwas1984/LaplaceInterpolation.jl",
+	"title": "github/vishwas1984/LaplaceInterpolation.jl",
+	"url": " https://rseng.github.io/software/repository/github/vishwas1984/LaplaceInterpolation.jl",
 	"content": "None"
 	},
-	"github/kdmurray91/libqes": {
-	"id": "github/kdmurray91/libqes",
-	"title": "github/kdmurray91/libqes",
-	"url": " https://rseng.github.io/software/repository/github/kdmurray91/libqes",
-	"content": "A small C library, with a bioinformatic focus. Optimised for speed and a clean API"
-	},
-	"github/kdmurray91/libqcpp": {
-	"id": "github/kdmurray91/libqcpp",
-	"title": "github/kdmurray91/libqcpp",
-	"url": " https://rseng.github.io/software/repository/github/kdmurray91/libqcpp",
-	"content": "libqc++: C++11 library for next-gen sequence quality control and assessment."
+	"github/achaikova/frbmclust": {
+	"id": "github/achaikova/frbmclust",
+	"title": "github/achaikova/frbmclust",
+	"url": " https://rseng.github.io/software/repository/github/achaikova/frbmclust",
+	"content": "None"
 	},
-	"github/kdmurray91/axe": {
-	"id": "github/kdmurray91/axe",
-	"title": "github/kdmurray91/axe",
-	"url": " https://rseng.github.io/software/repository/github/kdmurray91/axe",
-	"content": "Rapid competitive read demulitplexer. Made with tries."
+	"github/VirtualPlantLab/PlantSimEngine.jl": {
+	"id": "github/VirtualPlantLab/PlantSimEngine.jl",
+	"title": "github/VirtualPlantLab/PlantSimEngine.jl",
+	"url": " https://rseng.github.io/software/repository/github/VirtualPlantLab/PlantSimEngine.jl",
+	"content": "A simulation engine for models related to plants"
 	},
-	"github/SunilAnandatheertha/PXO": {
-	"id": "github/SunilAnandatheertha/PXO",
-	"title": "github/SunilAnandatheertha/PXO",
-	"url": " https://rseng.github.io/software/repository/github/SunilAnandatheertha/PXO",
-	"content": "PXO (Poly-XTAL Operations). Generate, analyze and export complex 2D space partitions like metallic grain structures"
+	"github/bpairet/mayo_hci": {
+	"id": "github/bpairet/mayo_hci",
+	"title": "github/bpairet/mayo_hci",
+	"url": " https://rseng.github.io/software/repository/github/bpairet/mayo_hci",
+	"content": "None"
 	},
-	"github/GalacticDynamics-Oxford/Agama": {
-	"id": "github/GalacticDynamics-Oxford/Agama",
-	"title": "github/GalacticDynamics-Oxford/Agama",
-	"url": " https://rseng.github.io/software/repository/github/GalacticDynamics-Oxford/Agama",
-	"content": "Action-based galaxy modeling framework"
+	"github/ropensci-org/roblog": {
+	"id": "github/ropensci-org/roblog",
+	"title": "github/ropensci-org/roblog",
+	"url": " https://rseng.github.io/software/repository/github/ropensci-org/roblog",
+	"content": "rOpenSci&#39;s blog guidance"
 	},
-	"github/mihanke/athos": {
-	"id": "github/mihanke/athos",
-	"title": "github/mihanke/athos",
-	"url": " https://rseng.github.io/software/repository/github/mihanke/athos",
-	"content": "ATHOS: On-the-fly stellar parameter determination of FGK stars based on flux ratios from optical spectra"
+	"github/ropensci-org/rotemplate": {
+	"id": "github/ropensci-org/rotemplate",
+	"title": "github/ropensci-org/rotemplate",
+	"url": " https://rseng.github.io/software/repository/github/ropensci-org/rotemplate",
+	"content": "pkgdown template for rOpenSci packages :nail_care: :sparkles:"
 	},
-	"github/EC-Earth/ece2cmor3": {
-	"id": "github/EC-Earth/ece2cmor3",
-	"title": "github/EC-Earth/ece2cmor3",
-	"url": " https://rseng.github.io/software/repository/github/EC-Earth/ece2cmor3",
-	"content": "Post-processing and cmorization of ec-earth output"
+	"github/ropensci-org/pkgreviewr": {
+	"id": "github/ropensci-org/pkgreviewr",
+	"title": "github/ropensci-org/pkgreviewr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci-org/pkgreviewr",
+	"content": "R package to facilitate rOpenSci package reviews."
 	},
-	"github/matthiasfabry/spinOS": {
-	"id": "github/matthiasfabry/spinOS",
-	"title": "github/matthiasfabry/spinOS",
-	"url": " https://rseng.github.io/software/repository/github/matthiasfabry/spinOS",
-	"content": "SPectroscopic and Interferometric Orbital Solution finder"
+	"github/freemed/freeshim": {
+	"id": "github/freemed/freeshim",
+	"title": "github/freemed/freeshim",
+	"url": " https://rseng.github.io/software/repository/github/freemed/freeshim",
+	"content": "opensource multiplatform medical device interface"
 	},
-	"github/ArneTillmann/AuDoLab": {
-	"id": "github/ArneTillmann/AuDoLab",
-	"title": "github/ArneTillmann/AuDoLab",
-	"url": " https://rseng.github.io/software/repository/github/ArneTillmann/AuDoLab",
-	"content": "None"
+	"github/ruiying-ocean/cgeniepy": {
+	"id": "github/ruiying-ocean/cgeniepy",
+	"title": "github/ruiying-ocean/cgeniepy",
+	"url": " https://rseng.github.io/software/repository/github/ruiying-ocean/cgeniepy",
+	"content": "A Python package for analysing the cGENIE model output"
 	},
-	"github/mjshao06/pdifFinder": {
-	"id": "github/mjshao06/pdifFinder",
-	"title": "github/mjshao06/pdifFinder",
-	"url": " https://rseng.github.io/software/repository/github/mjshao06/pdifFinder",
-	"content": "None"
+	"github/GOBLIN-Proj/goblin_lite": {
+	"id": "github/GOBLIN-Proj/goblin_lite",
+	"title": "github/GOBLIN-Proj/goblin_lite",
+	"url": " https://rseng.github.io/software/repository/github/GOBLIN-Proj/goblin_lite",
+	"content": "A goblin tool for the generation of static land balance scenarios and environment"
 	},
-	"github/nlppln/nlppln": {
-	"id": "github/nlppln/nlppln",
-	"title": "github/nlppln/nlppln",
-	"url": " https://rseng.github.io/software/repository/github/nlppln/nlppln",
-	"content": "NLP pipeline software using common workflow language"
+	"github/lorenaacuna/GASTLI": {
+	"id": "github/lorenaacuna/GASTLI",
+	"title": "github/lorenaacuna/GASTLI",
+	"url": " https://rseng.github.io/software/repository/github/lorenaacuna/GASTLI",
+	"content": "GAS gianT modeL for Interiors"
 	},
-	"github/tp2vis/distribute": {
-	"id": "github/tp2vis/distribute",
-	"title": "github/tp2vis/distribute",
-	"url": " https://rseng.github.io/software/repository/github/tp2vis/distribute",
-	"content": "None"
+	"github/metageni/FOCUS": {
+	"id": "github/metageni/FOCUS",
+	"title": "github/metageni/FOCUS",
+	"url": " https://rseng.github.io/software/repository/github/metageni/FOCUS",
+	"content": "FOCUS: An Agile Profiler for Metagenomic Data"
 	},
-	"github/mlegr/EqualISER": {
-	"id": "github/mlegr/EqualISER",
-	"title": "github/mlegr/EqualISER",
-	"url": " https://rseng.github.io/software/repository/github/mlegr/EqualISER",
-	"content": "None"
+	"github/JuliaPlots/Makie.jl": {
+	"id": "github/JuliaPlots/Makie.jl",
+	"title": "github/JuliaPlots/Makie.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaPlots/Makie.jl",
+	"content": "High level plotting on the GPU."
 	},
-	"github/fzagaria/COpops": {
-	"id": "github/fzagaria/COpops",
-	"title": "github/fzagaria/COpops",
-	"url": " https://rseng.github.io/software/repository/github/fzagaria/COpops",
-	"content": "A Jupyter notebook with a simple class to compute CO sizes and fluxes using the semi-analytical method developed by Zagaria et al. (2023b)."
+	"github/plazar/coast_guard": {
+	"id": "github/plazar/coast_guard",
+	"title": "github/plazar/coast_guard",
+	"url": " https://rseng.github.io/software/repository/github/plazar/coast_guard",
+	"content": "A python/PSRCHIVE-based timing pipeline for reducing Effelsberg data."
 	},
-	"github/sodascience/metasyn": {
-	"id": "github/sodascience/metasyn",
-	"title": "github/sodascience/metasyn",
-	"url": " https://rseng.github.io/software/repository/github/sodascience/metasyn",
-	"content": "Transparent and privacy-friendly synthetic data generation"
+	"github/plazar/TOASTER": {
+	"id": "github/plazar/TOASTER",
+	"title": "github/plazar/TOASTER",
+	"url": " https://rseng.github.io/software/repository/github/plazar/TOASTER",
+	"content": "A framework for generating, storing and tracking high-precision TOAs for PTAs as well as observation meta data and processing details."
 	},
-	"github/kylemede/ExoSOFT": {
-	"id": "github/kylemede/ExoSOFT",
-	"title": "github/kylemede/ExoSOFT",
-	"url": " https://rseng.github.io/software/repository/github/kylemede/ExoSOFT",
-	"content": "The Exoplanet Simple Orbit Fitting Toolbox (ExoSOFT).  Solves for the orbital elements of any single companion, provided observed radial velocity and/or astrometry."
+	"github/heuermh/dishevelled-bio": {
+	"id": "github/heuermh/dishevelled-bio",
+	"title": "github/heuermh/dishevelled-bio",
+	"url": " https://rseng.github.io/software/repository/github/heuermh/dishevelled-bio",
+	"content": "dishevelled.org bio"
 	},
-	"github/hsso/crete": {
-	"id": "github/hsso/crete",
-	"title": "github/hsso/crete",
-	"url": " https://rseng.github.io/software/repository/github/hsso/crete",
-	"content": "Comet RadiativE Transfer and Excitation"
+	"github/Kushaalkumar-pothula/FLARE": {
+	"id": "github/Kushaalkumar-pothula/FLARE",
+	"title": "github/Kushaalkumar-pothula/FLARE",
+	"url": " https://rseng.github.io/software/repository/github/Kushaalkumar-pothula/FLARE",
+	"content": "Generates a synthetic Fast Radio Burst catalog, using the Monte Carlo technique."
 	},
-	"github/LucaMalavolta/CCFpams": {
-	"id": "github/LucaMalavolta/CCFpams",
-	"title": "github/LucaMalavolta/CCFpams",
-	"url": " https://rseng.github.io/software/repository/github/LucaMalavolta/CCFpams",
-	"content": "Atmospheric Stellar Parameters from Cross-Correlation Functions for HARPS &amp; HARPS-N"
+	"github/SESMG/SESMG": {
+	"id": "github/SESMG/SESMG",
+	"title": "github/SESMG/SESMG",
+	"url": " https://rseng.github.io/software/repository/github/SESMG/SESMG",
+	"content": "Model generator for the optimization of energy systems, based on the modeling framework oemof. No programming skills are required to use it, as the parameters are entered using spreadsheets (e.g. Excel, LibreOffice)."
 	},
-	"github/LucaMalavolta/PyORBIT": {
-	"id": "github/LucaMalavolta/PyORBIT",
-	"title": "github/LucaMalavolta/PyORBIT",
-	"url": " https://rseng.github.io/software/repository/github/LucaMalavolta/PyORBIT",
-	"content": "PyORBIT: a code for exoplanet orbital parameters and stellar activity."
+	"github/DTsuna/CHIPS": {
+	"id": "github/DTsuna/CHIPS",
+	"title": "github/DTsuna/CHIPS",
+	"url": " https://rseng.github.io/software/repository/github/DTsuna/CHIPS",
+	"content": "Open source code to unveil the Complete History of Interaction-Powered Supernovae"
 	},
-	"github/eisascience/HISTA": {
-	"id": "github/eisascience/HISTA",
-	"title": "github/eisascience/HISTA",
-	"url": " https://rseng.github.io/software/repository/github/eisascience/HISTA",
-	"content": "Human Infertility Single-cell Testis Atlas"
+	"github/DTsuna/binary_precursor": {
+	"id": "github/DTsuna/binary_precursor",
+	"title": "github/DTsuna/binary_precursor",
+	"url": " https://rseng.github.io/software/repository/github/DTsuna/binary_precursor",
+	"content": "Light curve model of supernova precursors powered by compact object companions"
 	},
-	"github/NiallJeffrey/DeepMass": {
-	"id": "github/NiallJeffrey/DeepMass",
-	"title": "github/NiallJeffrey/DeepMass",
-	"url": " https://rseng.github.io/software/repository/github/NiallJeffrey/DeepMass",
-	"content": "Cosmological map inference with deep learning"
+	"github/changliao1025/pyflowline": {
+	"id": "github/changliao1025/pyflowline",
+	"title": "github/changliao1025/pyflowline",
+	"url": " https://rseng.github.io/software/repository/github/changliao1025/pyflowline",
+	"content": "A mesh independent river network generator for hydrologic models"
 	},
-	"github/NiallJeffrey/BornRaytrace": {
-	"id": "github/NiallJeffrey/BornRaytrace",
-	"title": "github/NiallJeffrey/BornRaytrace",
-	"url": " https://rseng.github.io/software/repository/github/NiallJeffrey/BornRaytrace",
-	"content": "BornRaytrace: simulating weak gravitational lensing effects"
+	"github/aspuru-guzik-group/funsies": {
+	"id": "github/aspuru-guzik-group/funsies",
+	"title": "github/aspuru-guzik-group/funsies",
+	"url": " https://rseng.github.io/software/repository/github/aspuru-guzik-group/funsies",
+	"content": "funsies is a lightweight workflow engine 🔧"
 	},
-	"github/czbiohub/cerebra": {
-	"id": "github/czbiohub/cerebra",
-	"title": "github/czbiohub/cerebra",
-	"url": " https://rseng.github.io/software/repository/github/czbiohub/cerebra",
-	"content": "A tool for fast and accurate summarizing of variant calling format (VCF) files"
+	"github/LBC-LNBio/PyMOL-KVFinder-web-Tools": {
+	"id": "github/LBC-LNBio/PyMOL-KVFinder-web-Tools",
+	"title": "github/LBC-LNBio/PyMOL-KVFinder-web-Tools",
+	"url": " https://rseng.github.io/software/repository/github/LBC-LNBio/PyMOL-KVFinder-web-Tools",
+	"content": "PyMOL KVFinder-web Tools: a PyMOL v2 plugin for interacting with KVFinder-web service"
 	},
-	"github/SpaceML/GalaxyGAN": {
-	"id": "github/SpaceML/GalaxyGAN",
-	"title": "github/SpaceML/GalaxyGAN",
-	"url": " https://rseng.github.io/software/repository/github/SpaceML/GalaxyGAN",
-	"content": "None"
+	"github/LBC-LNBio/parKVFinder-win": {
+	"id": "github/LBC-LNBio/parKVFinder-win",
+	"title": "github/LBC-LNBio/parKVFinder-win",
+	"url": " https://rseng.github.io/software/repository/github/LBC-LNBio/parKVFinder-win",
+	"content": "parKVFinder-win: thread-level parallel KVFinder for Windows "
 	},
-	"github/nevrome/bleiglas": {
-	"id": "github/nevrome/bleiglas",
-	"title": "github/nevrome/bleiglas",
-	"url": " https://rseng.github.io/software/repository/github/nevrome/bleiglas",
-	"content": "R Package - Spatiotemporal Data Interpolation and Visualisation based on 3D Tessellation"
+	"github/LBC-LNBio/pyKVFinder": {
+	"id": "github/LBC-LNBio/pyKVFinder",
+	"title": "github/LBC-LNBio/pyKVFinder",
+	"url": " https://rseng.github.io/software/repository/github/LBC-LNBio/pyKVFinder",
+	"content": "pyKVFinder: Python-C parallel KVFinder"
 	},
-	"github/Hyperthetical/DarkMatters": {
-	"id": "github/Hyperthetical/DarkMatters",
-	"title": "github/Hyperthetical/DarkMatters",
-	"url": " https://rseng.github.io/software/repository/github/Hyperthetical/DarkMatters",
-	"content": "Multi-frequency emissions from dark matter annihilation/decay"
+	"github/vreverdy/magrathea-pathfinder": {
+	"id": "github/vreverdy/magrathea-pathfinder",
+	"title": "github/vreverdy/magrathea-pathfinder",
+	"url": " https://rseng.github.io/software/repository/github/vreverdy/magrathea-pathfinder",
+	"content": "A 3D AMR high-performance framework to propagate photons in cosmological simulations"
 	},
-	"github/snystrom/memes": {
-	"id": "github/snystrom/memes",
-	"title": "github/snystrom/memes",
-	"url": " https://rseng.github.io/software/repository/github/snystrom/memes",
-	"content": "An R interface to the MEME Suite"
+	"github/vibbits/phyd3": {
+	"id": "github/vibbits/phyd3",
+	"title": "github/vibbits/phyd3",
+	"url": " https://rseng.github.io/software/repository/github/vibbits/phyd3",
+	"content": "Phylogenetic tree viewer based on D3.js"
 	},
-	"github/brian-lau/MatlabAUC": {
-	"id": "github/brian-lau/MatlabAUC",
-	"title": "github/brian-lau/MatlabAUC",
-	"url": " https://rseng.github.io/software/repository/github/brian-lau/MatlabAUC",
-	"content": "Matlab code for the area under the receiver operating curve (AUC) and confidence intervals"
+	"github/FAU-LAP/NOMAD-CAMELS": {
+	"id": "github/FAU-LAP/NOMAD-CAMELS",
+	"title": "github/FAU-LAP/NOMAD-CAMELS",
+	"url": " https://rseng.github.io/software/repository/github/FAU-LAP/NOMAD-CAMELS",
+	"content": "We are developing a configurable measurement software (CAMELS), targeted towards the requirements of experimental solid-state physics. Here many experiments utilize a multitude of measurement devices used in dynamically changing setups."
 	},
-	"github/theislab/anndata": {
-	"id": "github/theislab/anndata",
-	"title": "github/theislab/anndata",
-	"url": " https://rseng.github.io/software/repository/github/theislab/anndata",
-	"content": "Annotated data."
+	"github/sncosmo/sncosmo": {
+	"id": "github/sncosmo/sncosmo",
+	"title": "github/sncosmo/sncosmo",
+	"url": " https://rseng.github.io/software/repository/github/sncosmo/sncosmo",
+	"content": "Python library for supernova cosmology"
 	},
-	"github/theislab/scanpy": {
-	"id": "github/theislab/scanpy",
-	"title": "github/theislab/scanpy",
-	"url": " https://rseng.github.io/software/repository/github/theislab/scanpy",
-	"content": "Single-cell analysis in Python. Scales to &gt;1M cells."
+	"github/LucyMcGowan/tipr": {
+	"id": "github/LucyMcGowan/tipr",
+	"title": "github/LucyMcGowan/tipr",
+	"url": " https://rseng.github.io/software/repository/github/LucyMcGowan/tipr",
+	"content": "An R package for conducting sensitivity analyses for unmeasured confounders"
 	},
-	"github/theislab/scCODA": {
-	"id": "github/theislab/scCODA",
-	"title": "github/theislab/scCODA",
-	"url": " https://rseng.github.io/software/repository/github/theislab/scCODA",
-	"content": "A Bayesian model for compositional single-cell data analysis"
+	"github/chemfiles/chemfiles": {
+	"id": "github/chemfiles/chemfiles",
+	"title": "github/chemfiles/chemfiles",
+	"url": " https://rseng.github.io/software/repository/github/chemfiles/chemfiles",
+	"content": "Library for reading and writing chemistry files"
 	},
-	"github/theislab/scvelo": {
-	"id": "github/theislab/scvelo",
-	"title": "github/theislab/scvelo",
-	"url": " https://rseng.github.io/software/repository/github/theislab/scvelo",
-	"content": "RNA Velocity generalized through dynamical modeling"
+	"github/brian-team/brian2": {
+	"id": "github/brian-team/brian2",
+	"title": "github/brian-team/brian2",
+	"url": " https://rseng.github.io/software/repository/github/brian-team/brian2",
+	"content": "Brian is a free, open source simulator for spiking neural networks. "
 	},
-	"github/reedacartwright/dawg": {
-	"id": "github/reedacartwright/dawg",
-	"title": "github/reedacartwright/dawg",
-	"url": " https://rseng.github.io/software/repository/github/reedacartwright/dawg",
-	"content": "Simulating Sequence Evolution"
+	"github/cosimoNigro/agnpy": {
+	"id": "github/cosimoNigro/agnpy",
+	"title": "github/cosimoNigro/agnpy",
+	"url": " https://rseng.github.io/software/repository/github/cosimoNigro/agnpy",
+	"content": "Modelling jetted Active Galactic Nuclei radiative processes with python"
 	},
-	"github/reedacartwright/ngila": {
-	"id": "github/reedacartwright/ngila",
-	"title": "github/reedacartwright/ngila",
-	"url": " https://rseng.github.io/software/repository/github/reedacartwright/ngila",
-	"content": "Ngila is a global alignment program that can align pairs of sequences using   logarithmic and affine gap penalties."
+	"github/IndrajeetPatil/statsExpressions": {
+	"id": "github/IndrajeetPatil/statsExpressions",
+	"title": "github/IndrajeetPatil/statsExpressions",
+	"url": " https://rseng.github.io/software/repository/github/IndrajeetPatil/statsExpressions",
+	"content": "Expressions and dataframes with statistical details 📉 📜🔣✅"
 	},
-	"github/TNOCS/csWeb": {
-	"id": "github/TNOCS/csWeb",
-	"title": "github/TNOCS/csWeb",
-	"url": " https://rseng.github.io/software/repository/github/TNOCS/csWeb",
-	"content": "csWeb, short for common sense Web, is a userfriendly web application for showing (GIS) data on a map. It allows you to apply multiple filters to filter your data, and to style it, so you can immediately see what&#39;s important."
+	"github/IndrajeetPatil/ggstatsplot": {
+	"id": "github/IndrajeetPatil/ggstatsplot",
+	"title": "github/IndrajeetPatil/ggstatsplot",
+	"url": " https://rseng.github.io/software/repository/github/IndrajeetPatil/ggstatsplot",
+	"content": "Enhancing `ggplot2` plots with statistical analysis 📊🎨📣"
 	},
-	"github/Glogobyte/miRGalaxy": {
-	"id": "github/Glogobyte/miRGalaxy",
-	"title": "github/Glogobyte/miRGalaxy",
-	"url": " https://rseng.github.io/software/repository/github/Glogobyte/miRGalaxy",
-	"content": "miRGalaxy: a Galaxy‑based framework for interactive analysis of microRNA and isomiR sequencing data"
+	"github/LBNL-ETA/MSWH": {
+	"id": "github/LBNL-ETA/MSWH",
+	"title": "github/LBNL-ETA/MSWH",
+	"url": " https://rseng.github.io/software/repository/github/LBNL-ETA/MSWH",
+	"content": "Multiscale Solar Water Heating"
 	},
-	"github/MoreiraLAB/or": {
-	"id": "github/MoreiraLAB/or",
-	"title": "github/MoreiraLAB/or",
-	"url": " https://rseng.github.io/software/repository/github/MoreiraLAB/or",
-	"content": "Opiod Receptor Partners analysis code"
+	"github/scrm/scrmhub.io": {
+	"id": "github/scrm/scrmhub.io",
+	"title": "github/scrm/scrmhub.io",
+	"url": " https://rseng.github.io/software/repository/github/scrm/scrmhub.io",
+	"content": "a coalescent simulator for biological sequences."
 	},
-	"github/MoreiraLAB/mensadb-open": {
-	"id": "github/MoreiraLAB/mensadb-open",
-	"title": "github/MoreiraLAB/mensadb-open",
-	"url": " https://rseng.github.io/software/repository/github/MoreiraLAB/mensadb-open",
-	"content": "None"
+	"github/pandas-dev/pandas": {
+	"id": "github/pandas-dev/pandas",
+	"title": "github/pandas-dev/pandas",
+	"url": " https://rseng.github.io/software/repository/github/pandas-dev/pandas",
+	"content": "Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more"
 	},
-	"github/martinlackner/abcvoting": {
-	"id": "github/martinlackner/abcvoting",
-	"title": "github/martinlackner/abcvoting",
-	"url": " https://rseng.github.io/software/repository/github/martinlackner/abcvoting",
-	"content": "Python implementations of approval-based committee (multi-winner) voting rules"
+	"github/chfeder/turbulence_generator": {
+	"id": "github/chfeder/turbulence_generator",
+	"title": "github/chfeder/turbulence_generator",
+	"url": " https://rseng.github.io/software/repository/github/chfeder/turbulence_generator",
+	"content": "Turbulence driving and initial conditions generator"
 	},
-	"github/mirochaj/ares": {
-	"id": "github/mirochaj/ares",
-	"title": "github/mirochaj/ares",
-	"url": " https://rseng.github.io/software/repository/github/mirochaj/ares",
-	"content": "Accelerated Reionization Era Simulations"
+	"github/exomishra/kobe": {
+	"id": "github/exomishra/kobe",
+	"title": "github/exomishra/kobe",
+	"url": " https://rseng.github.io/software/repository/github/exomishra/kobe",
+	"content": "A program to add geometrical limitations and detection biases of a transit survey to theoretical planetary systems."
 	},
-	"github/mirochaj/sedop": {
-	"id": "github/mirochaj/sedop",
-	"title": "github/mirochaj/sedop",
-	"url": " https://rseng.github.io/software/repository/github/mirochaj/sedop",
-	"content": "Code for optimizing discrete versions of common SEDs."
+	"github/nrao/UniPOPS": {
+	"id": "github/nrao/UniPOPS",
+	"title": "github/nrao/UniPOPS",
+	"url": " https://rseng.github.io/software/repository/github/nrao/UniPOPS",
+	"content": "Archive of final NRAO UniPOPS source code distribution (version 3.5)"
 	},
-	"github/StingraySoftware/stingray": {
-	"id": "github/StingraySoftware/stingray",
-	"title": "github/StingraySoftware/stingray",
-	"url": " https://rseng.github.io/software/repository/github/StingraySoftware/stingray",
-	"content": "Anything can happen in the next half hour (including spectral timing made easy)!"
+	"github/drwaseemsheikh/audiometry": {
+	"id": "github/drwaseemsheikh/audiometry",
+	"title": "github/drwaseemsheikh/audiometry",
+	"url": " https://rseng.github.io/software/repository/github/drwaseemsheikh/audiometry",
+	"content": "Audiometry is an application framework written in C# and based on WPF and .NET that enables accurate digital recording, search, analysis, graphical visualization, and reproduction of human audio-vestibular impairment test data to assist in hearing loss or disability diagnosis."
 	},
-	"github/StingraySoftware/HENDRICS": {
-	"id": "github/StingraySoftware/HENDRICS",
-	"title": "github/StingraySoftware/HENDRICS",
-	"url": " https://rseng.github.io/software/repository/github/StingraySoftware/HENDRICS",
-	"content": "Shell scripts for spectral-timing analysis of X-ray astronomical data."
+	"github/genotoul-bioinfo/dgenies": {
+	"id": "github/genotoul-bioinfo/dgenies",
+	"title": "github/genotoul-bioinfo/dgenies",
+	"url": " https://rseng.github.io/software/repository/github/genotoul-bioinfo/dgenies",
+	"content": "Dotplot large Genomes in an Interactive, Efficient and Simple way"
 	},
-	"github/bertrandplez/Turbospectrum2019": {
-	"id": "github/bertrandplez/Turbospectrum2019",
-	"title": "github/bertrandplez/Turbospectrum2019",
-	"url": " https://rseng.github.io/software/repository/github/bertrandplez/Turbospectrum2019",
-	"content": "synthetic spectrum calculation companion to MARCS"
+	"github/genotoul-bioinfo/Binette": {
+	"id": "github/genotoul-bioinfo/Binette",
+	"title": "github/genotoul-bioinfo/Binette",
+	"url": " https://rseng.github.io/software/repository/github/genotoul-bioinfo/Binette",
+	"content": "A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools."
 	},
-	"github/bertrandplez/Turbospectrum_NLTE": {
-	"id": "github/bertrandplez/Turbospectrum_NLTE",
-	"title": "github/bertrandplez/Turbospectrum_NLTE",
-	"url": " https://rseng.github.io/software/repository/github/bertrandplez/Turbospectrum_NLTE",
-	"content": "Turbospectrum v20 with NLTE capability"
+	"github/linDing-groups/Deep-4mCW2V": {
+	"id": "github/linDing-groups/Deep-4mCW2V",
+	"title": "github/linDing-groups/Deep-4mCW2V",
+	"url": " https://rseng.github.io/software/repository/github/linDing-groups/Deep-4mCW2V",
+	"content": "A sequence-based deep learning approach to predict N4-methylcytosine sites in Escherichia coli "
 	},
-	"github/simon-smart88/shinyscholar": {
-	"id": "github/simon-smart88/shinyscholar",
-	"title": "github/simon-smart88/shinyscholar",
-	"url": " https://rseng.github.io/software/repository/github/simon-smart88/shinyscholar",
-	"content": "A template for creating modular shiny applications that meet academic standards and are reproducible"
+	"github/OceanGenomics/mudskipper": {
+	"id": "github/OceanGenomics/mudskipper",
+	"title": "github/OceanGenomics/mudskipper",
+	"url": " https://rseng.github.io/software/repository/github/OceanGenomics/mudskipper",
+	"content": "A tool for projecting genomic alignments to transcriptomic coordinates"
 	},
-	"github/grahambell/pymoc": {
-	"id": "github/grahambell/pymoc",
-	"title": "github/grahambell/pymoc",
-	"url": " https://rseng.github.io/software/repository/github/grahambell/pymoc",
-	"content": "Multi-Order Coverage map module for Python"
+	"github/vincentlab/PyFR": {
+	"id": "github/vincentlab/PyFR",
+	"title": "github/vincentlab/PyFR",
+	"url": " https://rseng.github.io/software/repository/github/vincentlab/PyFR",
+	"content": "PyFR"
 	},
-	"github/vsquicciarini/madys": {
-	"id": "github/vsquicciarini/madys",
-	"title": "github/vsquicciarini/madys",
-	"url": " https://rseng.github.io/software/repository/github/vsquicciarini/madys",
-	"content": "MADYS: isochronal parameter determination for young stellar and substellar objects"
+	"github/gadomski/antimeridian": {
+	"id": "github/gadomski/antimeridian",
+	"title": "github/gadomski/antimeridian",
+	"url": " https://rseng.github.io/software/repository/github/gadomski/antimeridian",
+	"content": "Correct GeoJSON geometries that cross the 180th meridian"
 	},
-	"github/wlloyduw/ContainerProfiler": {
-	"id": "github/wlloyduw/ContainerProfiler",
-	"title": "github/wlloyduw/ContainerProfiler",
-	"url": " https://rseng.github.io/software/repository/github/wlloyduw/ContainerProfiler",
+	"github/r-spatialecology/shar": {
+	"id": "github/r-spatialecology/shar",
+	"title": "github/r-spatialecology/shar",
+	"url": " https://rseng.github.io/software/repository/github/r-spatialecology/shar",
+	"content": ":package: Analyse species-habitat associations in R"
+	},
+	"github/ZacharyJia/opsdn": {
+	"id": "github/ZacharyJia/opsdn",
+	"title": "github/ZacharyJia/opsdn",
+	"url": " https://rseng.github.io/software/repository/github/ZacharyJia/opsdn",
 	"content": "None"
 	},
-	"github/tripathi/Atmospheric-Athena": {
-	"id": "github/tripathi/Atmospheric-Athena",
-	"title": "github/tripathi/Atmospheric-Athena",
-	"url": " https://rseng.github.io/software/repository/github/tripathi/Atmospheric-Athena",
-	"content": "3D Atmospheric escape model with ionizing radiative transfer"
+	"github/martinjzhang/scDRS": {
+	"id": "github/martinjzhang/scDRS",
+	"title": "github/martinjzhang/scDRS",
+	"url": " https://rseng.github.io/software/repository/github/martinjzhang/scDRS",
+	"content": "Single-cell disease relevance score (scDRS)"
 	},
-	"github/jtksai/PyCOOL": {
-	"id": "github/jtksai/PyCOOL",
-	"title": "github/jtksai/PyCOOL",
-	"url": " https://rseng.github.io/software/repository/github/jtksai/PyCOOL",
-	"content": "A fast object-oriented Python program that uses symplectic algorithms and GPU(s) to simulate scalar fields in the early universe"
+	"github/tidyverse/glue": {
+	"id": "github/tidyverse/glue",
+	"title": "github/tidyverse/glue",
+	"url": " https://rseng.github.io/software/repository/github/tidyverse/glue",
+	"content": "Glue strings to data in R. Small, fast, dependency free interpreted string literals."
 	},
-	"github/birnstiel/two-pop-py": {
-	"id": "github/birnstiel/two-pop-py",
-	"title": "github/birnstiel/two-pop-py",
-	"url": " https://rseng.github.io/software/repository/github/birnstiel/two-pop-py",
-	"content": "Implementation of the 2-population model for dust evolution in protoplanetary disks after Birnstiel, Klahr, &amp; Ercolano, A&amp;A 2012"
+	"github/tidyverse/ggplot2": {
+	"id": "github/tidyverse/ggplot2",
+	"title": "github/tidyverse/ggplot2",
+	"url": " https://rseng.github.io/software/repository/github/tidyverse/ggplot2",
+	"content": "An implementation of the Grammar of Graphics in R"
 	},
-	"github/gramos/imagetooth": {
-	"id": "github/gramos/imagetooth",
-	"title": "github/gramos/imagetooth",
-	"url": " https://rseng.github.io/software/repository/github/gramos/imagetooth",
-	"content": "This library allows to generate images of teeth for odontograms with tooth faces painted"
+	"github/kellino/DiscreteEntropy.jl": {
+	"id": "github/kellino/DiscreteEntropy.jl",
+	"title": "github/kellino/DiscreteEntropy.jl",
+	"url": " https://rseng.github.io/software/repository/github/kellino/DiscreteEntropy.jl",
+	"content": "Estimation of Shannon Entropy for Discrete Random Variables"
 	},
-	"github/CRPropa/CRPropa3": {
-	"id": "github/CRPropa/CRPropa3",
-	"title": "github/CRPropa/CRPropa3",
-	"url": " https://rseng.github.io/software/repository/github/CRPropa/CRPropa3",
-	"content": "  CRPropa is a public astrophysical simulation framework for propagating extraterrestrial ultra-high energy particles.   https://crpropa.github.io/CRPropa3/"
+	"github/polca/pathways": {
+	"id": "github/polca/pathways",
+	"title": "github/polca/pathways",
+	"url": " https://rseng.github.io/software/repository/github/polca/pathways",
+	"content": "Scenario-wide Life Cycle Assessment"
 	},
-	"github/CRPropa/CRPropa2": {
-	"id": "github/CRPropa/CRPropa2",
-	"title": "github/CRPropa/CRPropa2",
-	"url": " https://rseng.github.io/software/repository/github/CRPropa/CRPropa2",
-	"content": "Previous version of CRPropa"
+	"github/polca/unfold": {
+	"id": "github/polca/unfold",
+	"title": "github/polca/unfold",
+	"url": " https://rseng.github.io/software/repository/github/polca/unfold",
+	"content": "UNpacking For scenariO-based Lca Databases"
 	},
-	"github/siara-cc/Unishox2": {
-	"id": "github/siara-cc/Unishox2",
-	"title": "github/siara-cc/Unishox2",
-	"url": " https://rseng.github.io/software/repository/github/siara-cc/Unishox2",
-	"content": "Guaranteed compression for Unicode short strings"
+	"github/cole-trapnell-lab/monocle3": {
+	"id": "github/cole-trapnell-lab/monocle3",
+	"title": "github/cole-trapnell-lab/monocle3",
+	"url": " https://rseng.github.io/software/repository/github/cole-trapnell-lab/monocle3",
+	"content": "An analysis toolkit for single-cell RNA-seq."
 	},
-	"github/tariks/peakachu": {
-	"id": "github/tariks/peakachu",
-	"title": "github/tariks/peakachu",
-	"url": " https://rseng.github.io/software/repository/github/tariks/peakachu",
-	"content": "Genome-wide contact analysis using sklearn"
+	"github/cole-trapnell-lab/cufflinks": {
+	"id": "github/cole-trapnell-lab/cufflinks",
+	"title": "github/cole-trapnell-lab/cufflinks",
+	"url": " https://rseng.github.io/software/repository/github/cole-trapnell-lab/cufflinks",
+	"content": "a reference-guided assembler that assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples."
 	},
-	"github/McPHAC/McPHAC": {
-	"id": "github/McPHAC/McPHAC",
-	"title": "github/McPHAC/McPHAC",
-	"url": " https://rseng.github.io/software/repository/github/McPHAC/McPHAC",
-	"content": "The McGill Planar Hydrogen Atmosphere Code"
+	"github/DEIB-GECO/CombSAFE": {
+	"id": "github/DEIB-GECO/CombSAFE",
+	"title": "github/DEIB-GECO/CombSAFE",
+	"url": " https://rseng.github.io/software/repository/github/DEIB-GECO/CombSAFE",
+	"content": "Combinatorial and Semantic Analysis of Functional Elements"
 	},
-	"github/Chenmi0619/GALMoss": {
-	"id": "github/Chenmi0619/GALMoss",
-	"title": "github/Chenmi0619/GALMoss",
-	"url": " https://rseng.github.io/software/repository/github/Chenmi0619/GALMoss",
-	"content": "a galaxy surface bightness fitting code via gradient descent"
+	"github/DEIB-GECO/GeneNetFusion": {
+	"id": "github/DEIB-GECO/GeneNetFusion",
+	"title": "github/DEIB-GECO/GeneNetFusion",
+	"url": " https://rseng.github.io/software/repository/github/DEIB-GECO/GeneNetFusion",
+	"content": "None"
 	},
-	"github/ranocha/SummationByPartsOperators.jl": {
-	"id": "github/ranocha/SummationByPartsOperators.jl",
-	"title": "github/ranocha/SummationByPartsOperators.jl",
-	"url": " https://rseng.github.io/software/repository/github/ranocha/SummationByPartsOperators.jl",
-	"content": "A Julia library of summation-by-parts (SBP) operators used in finite difference, Fourier pseudospectral, continuous Galerkin, and discontinuous Galerkin methods to get provably stable semidiscretizations, paying special attention to boundary conditions."
+	"github/DEIB-GECO/MutViz": {
+	"id": "github/DEIB-GECO/MutViz",
+	"title": "github/DEIB-GECO/MutViz",
+	"url": " https://rseng.github.io/software/repository/github/DEIB-GECO/MutViz",
+	"content": "MutViz - Analysis and Visualization of Mutation Enrichments for Selected Genomic Regions and Cancer Types"
 	},
-	"github/cylammarco/WDPhotTools": {
-	"id": "github/cylammarco/WDPhotTools",
-	"title": "github/cylammarco/WDPhotTools",
-	"url": " https://rseng.github.io/software/repository/github/cylammarco/WDPhotTools",
-	"content": "The Python White Dwarf Photometric SED Fitter and Luminosity Function Builder"
+	"github/DEIB-GECO/VarSum": {
+	"id": "github/DEIB-GECO/VarSum",
+	"title": "github/DEIB-GECO/VarSum",
+	"url": " https://rseng.github.io/software/repository/github/DEIB-GECO/VarSum",
+	"content": "Data summarization tool for 1000 Genomes Project data"
 	},
-	"github/cylammarco/ASPIRED": {
-	"id": "github/cylammarco/ASPIRED",
-	"title": "github/cylammarco/ASPIRED",
-	"url": " https://rseng.github.io/software/repository/github/cylammarco/ASPIRED",
-	"content": "Automated SpectroPhotometric Image REDuction (ASPIRED)"
+	"github/DEIB-GECO/BC_Intrinsic_subtyping": {
+	"id": "github/DEIB-GECO/BC_Intrinsic_subtyping",
+	"title": "github/DEIB-GECO/BC_Intrinsic_subtyping",
+	"url": " https://rseng.github.io/software/repository/github/DEIB-GECO/BC_Intrinsic_subtyping",
+	"content": "None"
 	},
-	"github/wadpac/GGIR": {
-	"id": "github/wadpac/GGIR",
-	"title": "github/wadpac/GGIR",
-	"url": " https://rseng.github.io/software/repository/github/wadpac/GGIR",
-	"content": "Code corresponding to R package GGIR"
+	"github/DEIB-GECO/OpenGDC": {
+	"id": "github/DEIB-GECO/OpenGDC",
+	"title": "github/DEIB-GECO/OpenGDC",
+	"url": " https://rseng.github.io/software/repository/github/DEIB-GECO/OpenGDC",
+	"content": "An open-source Java tool to automatically extract and convert all clinical and genomic data from the Genomic Data Commons to BED, GTF, CSV, and JSON format"
 	},
-	"github/mc-imperial/jfs": {
-	"id": "github/mc-imperial/jfs",
-	"title": "github/mc-imperial/jfs",
-	"url": " https://rseng.github.io/software/repository/github/mc-imperial/jfs",
-	"content": "Constraint solver based on coverage-guided fuzzing"
+	"github/DEIB-GECO/ReRa": {
+	"id": "github/DEIB-GECO/ReRa",
+	"title": "github/DEIB-GECO/ReRa",
+	"url": " https://rseng.github.io/software/repository/github/DEIB-GECO/ReRa",
+	"content": "Supervised Relevance-Redundancy assessments for feature selection in omics-based classification"
 	},
-	"github/mc-imperial/gpuverify": {
-	"id": "github/mc-imperial/gpuverify",
-	"title": "github/mc-imperial/gpuverify",
-	"url": " https://rseng.github.io/software/repository/github/mc-imperial/gpuverify",
-	"content": "GPUVerify: a Verifier for GPU Kernels"
+	"github/DEIB-GECO/CRIS_single-sample": {
+	"id": "github/DEIB-GECO/CRIS_single-sample",
+	"title": "github/DEIB-GECO/CRIS_single-sample",
+	"url": " https://rseng.github.io/software/repository/github/DEIB-GECO/CRIS_single-sample",
+	"content": "Single-sample classifiers for CRIS on colorectal cancer data"
+	},
+	"github/DEIB-GECO/genereg": {
+	"id": "github/DEIB-GECO/genereg",
+	"title": "github/DEIB-GECO/genereg",
+	"url": " https://rseng.github.io/software/repository/github/DEIB-GECO/genereg",
+	"content": "Python library for the analysis of gene expression regulation systems of genes of interest in TCGA cancers."
 	},
-	"github/mc-imperial/multicore-test-harness": {
-	"id": "github/mc-imperial/multicore-test-harness",
-	"title": "github/mc-imperial/multicore-test-harness",
-	"url": " https://rseng.github.io/software/repository/github/mc-imperial/multicore-test-harness",
-	"content": "A multicore microprocessor test harness for measuring interference"
+	"github/cosmicrays/hermes": {
+	"id": "github/cosmicrays/hermes",
+	"title": "github/cosmicrays/hermes",
+	"url": " https://rseng.github.io/software/repository/github/cosmicrays/hermes",
+	"content": "HERMES is a publicly available computational framework for the line of sight integration over galactic radiative processes which creates sky maps in the HEALPix-compatibile format."
 	},
-	"github/jonescompneurolab/hnn-core": {
-	"id": "github/jonescompneurolab/hnn-core",
-	"title": "github/jonescompneurolab/hnn-core",
-	"url": " https://rseng.github.io/software/repository/github/jonescompneurolab/hnn-core",
-	"content": "Simulation and optimization of neural circuits for MEG/EEG source estimates"
+	"github/cosmicrays/DRAGON": {
+	"id": "github/cosmicrays/DRAGON",
+	"title": "github/cosmicrays/DRAGON",
+	"url": " https://rseng.github.io/software/repository/github/cosmicrays/DRAGON",
+	"content": "First version of the code - last update Dec 2015"
 	},
-	"github/VNNikolaidis/nnlib2Rcpp": {
-	"id": "github/VNNikolaidis/nnlib2Rcpp",
-	"title": "github/VNNikolaidis/nnlib2Rcpp",
-	"url": " https://rseng.github.io/software/repository/github/VNNikolaidis/nnlib2Rcpp",
-	"content": "An R package for Neural Nets created using nnlib2"
+	"github/SCIInstitute/UncertainSCI": {
+	"id": "github/SCIInstitute/UncertainSCI",
+	"title": "github/SCIInstitute/UncertainSCI",
+	"url": " https://rseng.github.io/software/repository/github/SCIInstitute/UncertainSCI",
+	"content": "None"
 	},
-	"github/argiopetech/base": {
-	"id": "github/argiopetech/base",
-	"title": "github/argiopetech/base",
-	"url": " https://rseng.github.io/software/repository/github/argiopetech/base",
-	"content": "Bayesian Analysis for Stellar Evolution"
+	"github/SchmidtDSE/afscgap": {
+	"id": "github/SchmidtDSE/afscgap",
+	"title": "github/SchmidtDSE/afscgap",
+	"url": " https://rseng.github.io/software/repository/github/SchmidtDSE/afscgap",
+	"content": "Python-based tools for NOAA AFSC GAP marine species surveys data"
 	},
-	"github/natashabatalha/PandExo": {
-	"id": "github/natashabatalha/PandExo",
-	"title": "github/natashabatalha/PandExo",
-	"url": " https://rseng.github.io/software/repository/github/natashabatalha/PandExo",
-	"content": "A Community Tool for Transiting Exoplanet Science with the JWST &amp; HST"
+	"github/jluastro/PopSyCLE": {
+	"id": "github/jluastro/PopSyCLE",
+	"title": "github/jluastro/PopSyCLE",
+	"url": " https://rseng.github.io/software/repository/github/jluastro/PopSyCLE",
+	"content": "Population Synthesis for Compact-object Lensing Events"
 	},
-	"github/natashabatalha/picaso": {
-	"id": "github/natashabatalha/picaso",
-	"title": "github/natashabatalha/picaso",
-	"url": " https://rseng.github.io/software/repository/github/natashabatalha/picaso",
-	"content": "A Planetary Intensity Code for Atmospheric Spectroscopy Observations"
+	"github/bmorris3/fleck": {
+	"id": "github/bmorris3/fleck",
+	"title": "github/bmorris3/fleck",
+	"url": " https://rseng.github.io/software/repository/github/bmorris3/fleck",
+	"content": "Fast approximate light curves for starspot rotational modulation"
 	},
-	"github/nsoranzo/sspace_basic": {
-	"id": "github/nsoranzo/sspace_basic",
-	"title": "github/nsoranzo/sspace_basic",
-	"url": " https://rseng.github.io/software/repository/github/nsoranzo/sspace_basic",
-	"content": "SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension"
+	"github/bmorris3/aesop": {
+	"id": "github/bmorris3/aesop",
+	"title": "github/bmorris3/aesop",
+	"url": " https://rseng.github.io/software/repository/github/bmorris3/aesop",
+	"content": "ARC Echelle Spectroscopic Observation Pipeline (aesop)"
 	},
-	"github/j-erler/pymf": {
-	"id": "github/j-erler/pymf",
-	"title": "github/j-erler/pymf",
-	"url": " https://rseng.github.io/software/repository/github/j-erler/pymf",
-	"content": "A python implementation of several matched filtering techniques for astronomical images."
+	"github/babelomics/impuSARS": {
+	"id": "github/babelomics/impuSARS",
+	"title": "github/babelomics/impuSARS",
+	"url": " https://rseng.github.io/software/repository/github/babelomics/impuSARS",
+	"content": "Software tool for the imputation of whole-genome SARS-CoV-2 sequences."
 	},
-	"github/erikhom/aida": {
-	"id": "github/erikhom/aida",
-	"title": "github/erikhom/aida",
-	"url": " https://rseng.github.io/software/repository/github/erikhom/aida",
-	"content": "Code for the Adaptive Image Deconvolution Algorithm (AIDA) of Hom et al. (2007) J. Opt. Soc. Amer. A"
+	"github/OliverFHD/GPUniverse": {
+	"id": "github/OliverFHD/GPUniverse",
+	"title": "github/OliverFHD/GPUniverse",
+	"url": " https://rseng.github.io/software/repository/github/OliverFHD/GPUniverse",
+	"content": "Modelling holographic quantum fields in finite dimensional Hilbert spaces with Generalised Pauli Operators (GPOs) and overlapping degrees of freedom. Also: simulate overlapping qubits with GPUs."
 	},
-	"github/ttgump/scDHMap": {
-	"id": "github/ttgump/scDHMap",
-	"title": "github/ttgump/scDHMap",
-	"url": " https://rseng.github.io/software/repository/github/ttgump/scDHMap",
-	"content": "Model-based deep hyperbolic manifold learning for visualizing complex hierarchical structures in single-cell genomics data"
+	"github/iric-soft/km": {
+	"id": "github/iric-soft/km",
+	"title": "github/iric-soft/km",
+	"url": " https://rseng.github.io/software/repository/github/iric-soft/km",
+	"content": "km : a software for RNA-seq investigation using k-mer decomposition"
 	},
-	"github/ttgump/scDeepCluster_pytorch": {
-	"id": "github/ttgump/scDeepCluster_pytorch",
-	"title": "github/ttgump/scDeepCluster_pytorch",
-	"url": " https://rseng.github.io/software/repository/github/ttgump/scDeepCluster_pytorch",
-	"content": "Pytorch implementation of scDeepCluster for Single Cell RNA-seq data"
+	"github/nhejazi/haldensify": {
+	"id": "github/nhejazi/haldensify",
+	"title": "github/nhejazi/haldensify",
+	"url": " https://rseng.github.io/software/repository/github/nhejazi/haldensify",
+	"content": ":package: R/haldensify: Highly Adaptive Lasso Conditional Density Estimation"
 	},
-	"github/GOMC-WSU/MoSDeF-dihedral-fit": {
-	"id": "github/GOMC-WSU/MoSDeF-dihedral-fit",
-	"title": "github/GOMC-WSU/MoSDeF-dihedral-fit",
-	"url": " https://rseng.github.io/software/repository/github/GOMC-WSU/MoSDeF-dihedral-fit",
-	"content": "MoSDeF-dihedral-fit: A simple software package to fit dihedrals via the MoSDeF software"
+	"github/nhejazi/txshift": {
+	"id": "github/nhejazi/txshift",
+	"title": "github/nhejazi/txshift",
+	"url": " https://rseng.github.io/software/repository/github/nhejazi/txshift",
+	"content": ":package: :game_die: R/txshift: Efficient Estimation of the Causal Effects of Stochastic Interventions, with Two-Phase Sampling Corrections"
 	},
-	"github/GOMC-WSU/GOMC": {
-	"id": "github/GOMC-WSU/GOMC",
-	"title": "github/GOMC-WSU/GOMC",
-	"url": " https://rseng.github.io/software/repository/github/GOMC-WSU/GOMC",
-	"content": "GOMC - GPU Optimized Monte Carlo is a parallel molecular simulation code designed for high-performance simulation of large systems"
+	"github/nhejazi/medoutcon": {
+	"id": "github/nhejazi/medoutcon",
+	"title": "github/nhejazi/medoutcon",
+	"url": " https://rseng.github.io/software/repository/github/nhejazi/medoutcon",
+	"content": ":package: R/medoutcon: Efficient Causal Mediation Analysis with Natural and Interventional Direct/Indirect Effects"
 	},
-	"github/brainets/frites": {
-	"id": "github/brainets/frites",
-	"title": "github/brainets/frites",
-	"url": " https://rseng.github.io/software/repository/github/brainets/frites",
-	"content": "Framework for Information Theoretical analysis of Electrophysiological data and Statistics"
+	"github/PyTorchLightning/metrics": {
+	"id": "github/PyTorchLightning/metrics",
+	"title": "github/PyTorchLightning/metrics",
+	"url": " https://rseng.github.io/software/repository/github/PyTorchLightning/metrics",
+	"content": "Machine learning metrics for distributed, scalable PyTorch applications."
 	},
-	"github/deepmedic/deepmedic": {
-	"id": "github/deepmedic/deepmedic",
-	"title": "github/deepmedic/deepmedic",
-	"url": " https://rseng.github.io/software/repository/github/deepmedic/deepmedic",
-	"content": "Efficient Multi-Scale 3D Convolutional Neural Network for Segmentation of 3D Medical Scans"
+	"github/TimothyADavis/GAStimator": {
+	"id": "github/TimothyADavis/GAStimator",
+	"title": "github/TimothyADavis/GAStimator",
+	"url": " https://rseng.github.io/software/repository/github/TimothyADavis/GAStimator",
+	"content": "Implementation of a Python MCMC gibbs-sampler with adaptive stepping"
 	},
-	"github/JuliaDiff/ReverseDiff.jl": {
-	"id": "github/JuliaDiff/ReverseDiff.jl",
-	"title": "github/JuliaDiff/ReverseDiff.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaDiff/ReverseDiff.jl",
-	"content": "Reverse Mode Automatic Differentiation for Julia"
+	"github/TimothyADavis/KinMSpy": {
+	"id": "github/TimothyADavis/KinMSpy",
+	"title": "github/TimothyADavis/KinMSpy",
+	"url": " https://rseng.github.io/software/repository/github/TimothyADavis/KinMSpy",
+	"content": "A Python version of KinMS (github.com/TimothyADavis/KinMS)"
 	},
-	"github/JuliaDiff/ForwardDiff.jl": {
-	"id": "github/JuliaDiff/ForwardDiff.jl",
-	"title": "github/JuliaDiff/ForwardDiff.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaDiff/ForwardDiff.jl",
-	"content": "Forward Mode Automatic Differentiation for Julia"
+	"github/ranocha/SummationByPartsOperators.jl": {
+	"id": "github/ranocha/SummationByPartsOperators.jl",
+	"title": "github/ranocha/SummationByPartsOperators.jl",
+	"url": " https://rseng.github.io/software/repository/github/ranocha/SummationByPartsOperators.jl",
+	"content": "A Julia library of summation-by-parts (SBP) operators used in finite difference, Fourier pseudospectral, continuous Galerkin, and discontinuous Galerkin methods to get provably stable semidiscretizations, paying special attention to boundary conditions."
 	},
-	"github/sherpa-deproject/deproject": {
-	"id": "github/sherpa-deproject/deproject",
-	"title": "github/sherpa-deproject/deproject",
-	"url": " https://rseng.github.io/software/repository/github/sherpa-deproject/deproject",
-	"content": "CIAO Sherpa extension package for deprojection of two-dimensional annular X-ray spectra to recover the three-dimensional source properties."
+	"github/PyTables/PyTables": {
+	"id": "github/PyTables/PyTables",
+	"title": "github/PyTables/PyTables",
+	"url": " https://rseng.github.io/software/repository/github/PyTables/PyTables",
+	"content": "A Python package to manage extremely large amounts of data"
 	},
-	"github/xfangcosmo/FFTLog-and-beyond": {
-	"id": "github/xfangcosmo/FFTLog-and-beyond",
-	"title": "github/xfangcosmo/FFTLog-and-beyond",
-	"url": " https://rseng.github.io/software/repository/github/xfangcosmo/FFTLog-and-beyond",
-	"content": "An FFTLog code for efficiently computing integrals containing 1 spherical Bessel function or Bessel function or its 1st/2nd derivative."
+	"github/muLAn-project/muLAn": {
+	"id": "github/muLAn-project/muLAn",
+	"title": "github/muLAn-project/muLAn",
+	"url": " https://rseng.github.io/software/repository/github/muLAn-project/muLAn",
+	"content": "muLAn: MICROlensing Analysis software"
 	},
-	"github/xfangcosmo/2DFFTLog": {
-	"id": "github/xfangcosmo/2DFFTLog",
-	"title": "github/xfangcosmo/2DFFTLog",
-	"url": " https://rseng.github.io/software/repository/github/xfangcosmo/2DFFTLog",
-	"content": "2DFFTLog for Covariances from Fourier Space to Real Space"
+	"github/Ouranosinc/xclim": {
+	"id": "github/Ouranosinc/xclim",
+	"title": "github/Ouranosinc/xclim",
+	"url": " https://rseng.github.io/software/repository/github/Ouranosinc/xclim",
+	"content": "Library of derived climate variables, ie climate indicators, based on xarray. "
 	},
-	"github/aprsa/dips": {
-	"id": "github/aprsa/dips",
-	"title": "github/aprsa/dips",
-	"url": " https://rseng.github.io/software/repository/github/aprsa/dips",
-	"content": "dips: detrending periodic signals in timeseries."
+	"github/VincentAlcazer/StatAid": {
+	"id": "github/VincentAlcazer/StatAid",
+	"title": "github/VincentAlcazer/StatAid",
+	"url": " https://rseng.github.io/software/repository/github/VincentAlcazer/StatAid",
+	"content": "StatAid is a Shiny app built in an R package to guide researchers and clinicians through data analysis"
 	},
-	"github/aprsa/ebai": {
-	"id": "github/aprsa/ebai",
-	"title": "github/aprsa/ebai",
-	"url": " https://rseng.github.io/software/repository/github/aprsa/ebai",
-	"content": "Eclipsing Binaries with Artificial Intelligence"
+	"github/tylertrimble/viswaternet": {
+	"id": "github/tylertrimble/viswaternet",
+	"title": "github/tylertrimble/viswaternet",
+	"url": " https://rseng.github.io/software/repository/github/tylertrimble/viswaternet",
+	"content": "A Python package for easy generation and customization of water distribution network visualizations."
 	},
-	"github/HenrykHaniewicz/PSRVoid": {
-	"id": "github/HenrykHaniewicz/PSRVoid",
-	"title": "github/HenrykHaniewicz/PSRVoid",
-	"url": " https://rseng.github.io/software/repository/github/HenrykHaniewicz/PSRVoid",
-	"content": "The statistical suite to determine which integrated pulse profiles should go into your times-of-arrival! Also able to mine data from the ATNF catalog."
+	"github/dealii/dealii": {
+	"id": "github/dealii/dealii",
+	"title": "github/dealii/dealii",
+	"url": " https://rseng.github.io/software/repository/github/dealii/dealii",
+	"content": "The development repository for the deal.II finite element library."
 	},
-	"github/UTEL-UIUC/gtfs_segments": {
-	"id": "github/UTEL-UIUC/gtfs_segments",
-	"title": "github/UTEL-UIUC/gtfs_segments",
-	"url": " https://rseng.github.io/software/repository/github/UTEL-UIUC/gtfs_segments",
-	"content": "GTFS Segments: A fast and efficient library to generate bus stop spacings"
+	"github/CliMA/CalibrateEmulateSample.jl": {
+	"id": "github/CliMA/CalibrateEmulateSample.jl",
+	"title": "github/CliMA/CalibrateEmulateSample.jl",
+	"url": " https://rseng.github.io/software/repository/github/CliMA/CalibrateEmulateSample.jl",
+	"content": "Stochastic Optimization, Learning, Uncertainty and Sampling"
 	},
-	"github/yfperezg/frisbhee": {
-	"id": "github/yfperezg/frisbhee",
-	"title": "github/yfperezg/frisbhee",
-	"url": " https://rseng.github.io/software/repository/github/yfperezg/frisbhee",
-	"content": "None"
+	"github/CliMA/EnsembleKalmanProcesses.jl": {
+	"id": "github/CliMA/EnsembleKalmanProcesses.jl",
+	"title": "github/CliMA/EnsembleKalmanProcesses.jl",
+	"url": " https://rseng.github.io/software/repository/github/CliMA/EnsembleKalmanProcesses.jl",
+	"content": "Implements Optimization and approximate uncertainty quantification algorithms, Ensemble Kalman Inversion, and Ensemble Kalman Processes."
 	},
-	"github/mbursa/sim5": {
-	"id": "github/mbursa/sim5",
-	"title": "github/mbursa/sim5",
-	"url": " https://rseng.github.io/software/repository/github/mbursa/sim5",
-	"content": "Library for ray-tracing and radiation transport in general relativity"
+	"github/undark-lab/swyft": {
+	"id": "github/undark-lab/swyft",
+	"title": "github/undark-lab/swyft",
+	"url": " https://rseng.github.io/software/repository/github/undark-lab/swyft",
+	"content": "Truncated marginal neural ratio estimation estimation with PyTorch."
 	},
-	"github/mbursa/disk-models": {
-	"id": "github/mbursa/disk-models",
-	"title": "github/mbursa/disk-models",
-	"url": " https://rseng.github.io/software/repository/github/mbursa/disk-models",
-	"content": "Accretion disk radial structure models"
+	"github/undark-lab/albatross": {
+	"id": "github/undark-lab/albatross",
+	"title": "github/undark-lab/albatross",
+	"url": " https://rseng.github.io/software/repository/github/undark-lab/albatross",
+	"content": "A simulation-based Inference (SBI) library designed to perform analysis on stellar streams in the Milky Way"
 	},
-	"github/SciOmicsLab/PhenoComb": {
-	"id": "github/SciOmicsLab/PhenoComb",
-	"title": "github/SciOmicsLab/PhenoComb",
-	"url": " https://rseng.github.io/software/repository/github/SciOmicsLab/PhenoComb",
-	"content": "An R package for combinatorial analysis of phenotypes"
+	"github/undark-lab/sstrax": {
+	"id": "github/undark-lab/sstrax",
+	"title": "github/undark-lab/sstrax",
+	"url": " https://rseng.github.io/software/repository/github/undark-lab/sstrax",
+	"content": "A jax-accelerated modelling code for Milky Way stellar streams"
 	},
-	"github/range-et/PGL": {
-	"id": "github/range-et/PGL",
-	"title": "github/range-et/PGL",
-	"url": " https://rseng.github.io/software/repository/github/range-et/PGL",
-	"content": "The Plebeian Graph Library: A WebGL based network visusalisation and diagnostics package"
+	"github/QuaCaTeam/quaca": {
+	"id": "github/QuaCaTeam/quaca",
+	"title": "github/QuaCaTeam/quaca",
+	"url": " https://rseng.github.io/software/repository/github/QuaCaTeam/quaca",
+	"content": "QuaCa is an open-source library which provides fast calculations of nonequilibrium atom-surface interactions."
 	},
-	"github/SysBioUAB/hpi_predictor": {
-	"id": "github/SysBioUAB/hpi_predictor",
-	"title": "github/SysBioUAB/hpi_predictor",
-	"url": " https://rseng.github.io/software/repository/github/SysBioUAB/hpi_predictor",
-	"content": "Bash+R tool to predict host-pathogen protein-protein interactions based on numerical encoding of physicochemical descriptors"
+	"github/atfrank/PyShifts": {
+	"id": "github/atfrank/PyShifts",
+	"title": "github/atfrank/PyShifts",
+	"url": " https://rseng.github.io/software/repository/github/atfrank/PyShifts",
+	"content": "Pyshifts: A Pymol Plugin for Chemical Shift-Based Analysis of Biomolecular Ensembles"
 	},
 	"github/Crompulence/cpl-library": {
 	"id": "github/Crompulence/cpl-library",
@@ -22911,3329 +22707,3365 @@
 	"url": " https://rseng.github.io/software/repository/github/Crompulence/cpl-library",
 	"content": "None"
 	},
-	"github/parklab/LiRA": {
-	"id": "github/parklab/LiRA",
-	"title": "github/parklab/LiRA",
-	"url": " https://rseng.github.io/software/repository/github/parklab/LiRA",
-	"content": "(Linked Read Analysis) a computational tool for removing amplification artifacts from single-cell DNA sequencing data and estimating mutation rates in single cells."
-	},
-	"github/parklab/SCAN2": {
-	"id": "github/parklab/SCAN2",
-	"title": "github/parklab/SCAN2",
-	"url": " https://rseng.github.io/software/repository/github/parklab/SCAN2",
-	"content": "SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)"
-	},
-	"github/florpi/sunbird": {
-	"id": "github/florpi/sunbird",
-	"title": "github/florpi/sunbird",
-	"url": " https://rseng.github.io/software/repository/github/florpi/sunbird",
-	"content": "COsmOlogical inference with dEnsity Split cluStering"
-	},
-	"github/HITS-AIN/GPCC.jl": {
-	"id": "github/HITS-AIN/GPCC.jl",
-	"title": "github/HITS-AIN/GPCC.jl",
-	"url": " https://rseng.github.io/software/repository/github/HITS-AIN/GPCC.jl",
-	"content": "Gaussian process cross correlation"
+	"github/i-VRESSE/workflow-builder": {
+	"id": "github/i-VRESSE/workflow-builder",
+	"title": "github/i-VRESSE/workflow-builder",
+	"url": " https://rseng.github.io/software/repository/github/i-VRESSE/workflow-builder",
+	"content": "Graphical interface to build a workflow file"
 	},
-	"github/HITS-AIN/PINK": {
-	"id": "github/HITS-AIN/PINK",
-	"title": "github/HITS-AIN/PINK",
-	"url": " https://rseng.github.io/software/repository/github/HITS-AIN/PINK",
-	"content": "Parallelized rotation and flipping INvariant Kohonen maps"
+	"github/i-VRESSE/pdbtbx-ts": {
+	"id": "github/i-VRESSE/pdbtbx-ts",
+	"title": "github/i-VRESSE/pdbtbx-ts",
+	"url": " https://rseng.github.io/software/repository/github/i-VRESSE/pdbtbx-ts",
+	"content": "JS wrapper around pdbtbx rust crate"
 	},
-	"github/taxprofiler/taxpasta": {
-	"id": "github/taxprofiler/taxpasta",
-	"title": "github/taxprofiler/taxpasta",
-	"url": " https://rseng.github.io/software/repository/github/taxprofiler/taxpasta",
-	"content": "TAXnomic Profile Aggregation and STAndardisation"
+	"github/benvanwerkhoven/kernel_tuner": {
+	"id": "github/benvanwerkhoven/kernel_tuner",
+	"title": "github/benvanwerkhoven/kernel_tuner",
+	"url": " https://rseng.github.io/software/repository/github/benvanwerkhoven/kernel_tuner",
+	"content": "Kernel Tuner"
 	},
-	"github/Cloud-Drift/clouddrift": {
-	"id": "github/Cloud-Drift/clouddrift",
-	"title": "github/Cloud-Drift/clouddrift",
-	"url": " https://rseng.github.io/software/repository/github/Cloud-Drift/clouddrift",
-	"content": "CloudDrift accelerates the use of Lagrangian data for atmospheric, oceanic, and climate sciences."
+	"github/eucp-project/storyboards": {
+	"id": "github/eucp-project/storyboards",
+	"title": "github/eucp-project/storyboards",
+	"url": " https://rseng.github.io/software/repository/github/eucp-project/storyboards",
+	"content": "Simple web application to show example use cases with some interactivity. (visitors via old url will be redirected to the website with new url)"
 	},
-	"github/PyTorchLightning/metrics": {
-	"id": "github/PyTorchLightning/metrics",
-	"title": "github/PyTorchLightning/metrics",
-	"url": " https://rseng.github.io/software/repository/github/PyTorchLightning/metrics",
-	"content": "Machine learning metrics for distributed, scalable PyTorch applications."
+	"github/eucp-project/atlas": {
+	"id": "github/eucp-project/atlas",
+	"title": "github/eucp-project/atlas",
+	"url": " https://rseng.github.io/software/repository/github/eucp-project/atlas",
+	"content": "prototype result browser"
 	},
-	"github/dmilakovic/QSOSIM10": {
-	"id": "github/dmilakovic/QSOSIM10",
-	"title": "github/dmilakovic/QSOSIM10",
-	"url": " https://rseng.github.io/software/repository/github/dmilakovic/QSOSIM10",
-	"content": "Fortran code to generate artificial QSO spectra"
+	"github/cl3425/Clairvoyance": {
+	"id": "github/cl3425/Clairvoyance",
+	"title": "github/cl3425/Clairvoyance",
+	"url": " https://rseng.github.io/software/repository/github/cl3425/Clairvoyance",
+	"content": "Predicting multiple-planet systems for TESS"
 	},
-	"github/yhoogstrate/fastafs": {
-	"id": "github/yhoogstrate/fastafs",
-	"title": "github/yhoogstrate/fastafs",
-	"url": " https://rseng.github.io/software/repository/github/yhoogstrate/fastafs",
-	"content": "toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT &amp; TWOBIT files"
+	"github/baker-laboratory/RoseTTAFold-All-Atom": {
+	"id": "github/baker-laboratory/RoseTTAFold-All-Atom",
+	"title": "github/baker-laboratory/RoseTTAFold-All-Atom",
+	"url": " https://rseng.github.io/software/repository/github/baker-laboratory/RoseTTAFold-All-Atom",
+	"content": "RoseTTAFold All-Atom is a biomolecular structure prediction neural network that can predict a broad range of biomolecular assemblies."
 	},
-	"github/pypeit/PypeIt": {
-	"id": "github/pypeit/PypeIt",
-	"title": "github/pypeit/PypeIt",
-	"url": " https://rseng.github.io/software/repository/github/pypeit/PypeIt",
-	"content": "The Python Spectroscopic Data Reduction Pipeline"
+	"github/shaelebrown/TDApplied": {
+	"id": "github/shaelebrown/TDApplied",
+	"title": "github/shaelebrown/TDApplied",
+	"url": " https://rseng.github.io/software/repository/github/shaelebrown/TDApplied",
+	"content": "An R package for statistics and machine learning with persistence diagrams"
 	},
-	"github/mbhall88/rasusa": {
-	"id": "github/mbhall88/rasusa",
-	"title": "github/mbhall88/rasusa",
-	"url": " https://rseng.github.io/software/repository/github/mbhall88/rasusa",
-	"content": "Randomly subsample sequencing reads to a specified coverage"
+	"github/wokast/RePrimAnd": {
+	"id": "github/wokast/RePrimAnd",
+	"title": "github/wokast/RePrimAnd",
+	"url": " https://rseng.github.io/software/repository/github/wokast/RePrimAnd",
+	"content": "Support library providing EOS and primitive recovery framework for general relativistic ideal MHD"
 	},
-	"github/wuzhenao/CPPLS-MLP": {
-	"id": "github/wuzhenao/CPPLS-MLP",
-	"title": "github/wuzhenao/CPPLS-MLP",
-	"url": " https://rseng.github.io/software/repository/github/wuzhenao/CPPLS-MLP",
-	"content": "None"
+	"github/wokast/PyCactus": {
+	"id": "github/wokast/PyCactus",
+	"title": "github/wokast/PyCactus",
+	"url": " https://rseng.github.io/software/repository/github/wokast/PyCactus",
+	"content": "Python packages for post-processing Cactus computational toolkit simulation data"
 	},
-	"github/IAMconsortium/pyam": {
-	"id": "github/IAMconsortium/pyam",
-	"title": "github/IAMconsortium/pyam",
-	"url": " https://rseng.github.io/software/repository/github/IAMconsortium/pyam",
-	"content": "Analysis &amp; visualization of energy &amp; climate scenarios"
+	"github/zdelrosario/py_grama": {
+	"id": "github/zdelrosario/py_grama",
+	"title": "github/zdelrosario/py_grama",
+	"url": " https://rseng.github.io/software/repository/github/zdelrosario/py_grama",
+	"content": "Implementation of a grammar of model analysis"
 	},
-	"github/kernsuite-debian/parseltongue": {
-	"id": "github/kernsuite-debian/parseltongue",
-	"title": "github/kernsuite-debian/parseltongue",
-	"url": " https://rseng.github.io/software/repository/github/kernsuite-debian/parseltongue",
+	"github/LMJL-Alea/ktest": {
+	"id": "github/LMJL-Alea/ktest",
+	"title": "github/LMJL-Alea/ktest",
+	"url": " https://rseng.github.io/software/repository/github/LMJL-Alea/ktest",
 	"content": "None"
 	},
-	"github/zoometh/iconr": {
-	"id": "github/zoometh/iconr",
-	"title": "github/zoometh/iconr",
-	"url": " https://rseng.github.io/software/repository/github/zoometh/iconr",
-	"content": "Formal methods to study Prehistory iconography"
-	},
-	"github/guillochon/MOSFiT": {
-	"id": "github/guillochon/MOSFiT",
-	"title": "github/guillochon/MOSFiT",
-	"url": " https://rseng.github.io/software/repository/github/guillochon/MOSFiT",
-	"content": "Modular Open Source Fitter for Transients"
-	},
-	"github/mmp2/megaman": {
-	"id": "github/mmp2/megaman",
-	"title": "github/mmp2/megaman",
-	"url": " https://rseng.github.io/software/repository/github/mmp2/megaman",
-	"content": "megaman: Manifold Learning for Millions of Points "
-	},
-	"github/10XGenomics/bamtofastq": {
-	"id": "github/10XGenomics/bamtofastq",
-	"title": "github/10XGenomics/bamtofastq",
-	"url": " https://rseng.github.io/software/repository/github/10XGenomics/bamtofastq",
-	"content": "Convert 10x BAM files to the original FASTQs compatible with 10x pipelines"
+	"github/carlosborca/CrystaLattE": {
+	"id": "github/carlosborca/CrystaLattE",
+	"title": "github/carlosborca/CrystaLattE",
+	"url": " https://rseng.github.io/software/repository/github/carlosborca/CrystaLattE",
+	"content": "Set of scripts to automate the calculation of crystal lattice energies."
 	},
-	"github/linqs/psl": {
-	"id": "github/linqs/psl",
-	"title": "github/linqs/psl",
-	"url": " https://rseng.github.io/software/repository/github/linqs/psl",
-	"content": "The PSL software from the University of Maryland and the University of California Santa Cruz"
+	"github/LiuJJ0327/CCPE": {
+	"id": "github/LiuJJ0327/CCPE",
+	"title": "github/LiuJJ0327/CCPE",
+	"url": " https://rseng.github.io/software/repository/github/LiuJJ0327/CCPE",
+	"content": "Cell cycle pseudotome estimation for scRNA-seq data"
 	},
-	"github/dpthorngren/PlanetSlicer": {
-	"id": "github/dpthorngren/PlanetSlicer",
-	"title": "github/dpthorngren/PlanetSlicer",
-	"url": " https://rseng.github.io/software/repository/github/dpthorngren/PlanetSlicer",
-	"content": "A simple implementation of the orange-slice algorithm for fitting brightness maps to phase curves (from Cowan and Agol 2008) extended to also handle reflected light (Mayorga et al. 2020)."
+	"github/SERVIR/servir-aces": {
+	"id": "github/SERVIR/servir-aces",
+	"title": "github/SERVIR/servir-aces",
+	"url": " https://rseng.github.io/software/repository/github/SERVIR/servir-aces",
+	"content": "Agricultural Classification and Estimation Service"
 	},
-	"github/bjmt/universalmotif": {
-	"id": "github/bjmt/universalmotif",
-	"title": "github/bjmt/universalmotif",
-	"url": " https://rseng.github.io/software/repository/github/bjmt/universalmotif",
-	"content": "Motif manipulation functions for R."
+	"github/JeffLCoughlin/EphemMatch": {
+	"id": "github/JeffLCoughlin/EphemMatch",
+	"title": "github/JeffLCoughlin/EphemMatch",
+	"url": " https://rseng.github.io/software/repository/github/JeffLCoughlin/EphemMatch",
+	"content": "Code to do ephemeris matching of DR25 TCEs, KOIs, and EBs for false positive identificaiton."
 	},
-	"github/jonathanHuwP/CrystalGrowthTracker": {
-	"id": "github/jonathanHuwP/CrystalGrowthTracker",
-	"title": "github/jonathanHuwP/CrystalGrowthTracker",
-	"url": " https://rseng.github.io/software/repository/github/jonathanHuwP/CrystalGrowthTracker",
-	"content": "Extract face growth rate data from x-ray video of growing crystals."
+	"github/JeffLCoughlin/skye": {
+	"id": "github/JeffLCoughlin/skye",
+	"title": "github/JeffLCoughlin/skye",
+	"url": " https://rseng.github.io/software/repository/github/JeffLCoughlin/skye",
+	"content": "The Kepler DR25 Skye Test"
 	},
-	"github/jluastro/PopSyCLE": {
-	"id": "github/jluastro/PopSyCLE",
-	"title": "github/jluastro/PopSyCLE",
-	"url": " https://rseng.github.io/software/repository/github/jluastro/PopSyCLE",
-	"content": "Population Synthesis for Compact-object Lensing Events"
+	"github/bcgsc/goldrush": {
+	"id": "github/bcgsc/goldrush",
+	"title": "github/bcgsc/goldrush",
+	"url": " https://rseng.github.io/software/repository/github/bcgsc/goldrush",
+	"content": "Linear-time de novo Long Read Assembler"
 	},
-	"github/tjlcbakx/redshift-search-graphs": {
-	"id": "github/tjlcbakx/redshift-search-graphs",
-	"title": "github/tjlcbakx/redshift-search-graphs",
-	"url": " https://rseng.github.io/software/repository/github/tjlcbakx/redshift-search-graphs",
-	"content": "Efficient analysis of bandwidth coverage and spectral lines for finding z-specs"
+	"github/bcgsc/NanoSim": {
+	"id": "github/bcgsc/NanoSim",
+	"title": "github/bcgsc/NanoSim",
+	"url": " https://rseng.github.io/software/repository/github/bcgsc/NanoSim",
+	"content": "Nanopore sequence read simulator"
 	},
-	"github/ladsantos/flatstar": {
-	"id": "github/ladsantos/flatstar",
-	"title": "github/ladsantos/flatstar",
-	"url": " https://rseng.github.io/software/repository/github/ladsantos/flatstar",
-	"content": "Make 2d intensity maps of limb-darkened stars."
+	"github/bcgsc/TMBur": {
+	"id": "github/bcgsc/TMBur",
+	"title": "github/bcgsc/TMBur",
+	"url": " https://rseng.github.io/software/repository/github/bcgsc/TMBur",
+	"content": "Derive TMB estimates from whole genome fastq files.    Runs alignment and variant calling before reporting a variety of TMB estimates"
 	},
-	"github/ladsantos/p-winds": {
-	"id": "github/ladsantos/p-winds",
-	"title": "github/ladsantos/p-winds",
-	"url": " https://rseng.github.io/software/repository/github/ladsantos/p-winds",
-	"content": "Python implementation of Parker wind models for exoplanet atmospheres"
+	"github/bcgsc/ntCard": {
+	"id": "github/bcgsc/ntCard",
+	"title": "github/bcgsc/ntCard",
+	"url": " https://rseng.github.io/software/repository/github/bcgsc/ntCard",
+	"content": "Estimating k-mer coverage histogram of genomics data"
 	},
-	"github/dieghernan/tidyterra": {
-	"id": "github/dieghernan/tidyterra",
-	"title": "github/dieghernan/tidyterra",
-	"url": " https://rseng.github.io/software/repository/github/dieghernan/tidyterra",
-	"content": "tidyverse and ggplot2 methods for terra spatial objects"
+	"github/bcgsc/tigmint": {
+	"id": "github/bcgsc/tigmint",
+	"title": "github/bcgsc/tigmint",
+	"url": " https://rseng.github.io/software/repository/github/bcgsc/tigmint",
+	"content": "⛓ Correct misassemblies using linked AND long reads"
 	},
-	"github/najoshi/sickle": {
-	"id": "github/najoshi/sickle",
-	"title": "github/najoshi/sickle",
-	"url": " https://rseng.github.io/software/repository/github/najoshi/sickle",
-	"content": "Windowed Adaptive Trimming for fastq files using quality"
+	"github/bcgsc/longstitch": {
+	"id": "github/bcgsc/longstitch",
+	"title": "github/bcgsc/longstitch",
+	"url": " https://rseng.github.io/software/repository/github/bcgsc/longstitch",
+	"content": "Correct and scaffold assemblies using long reads"
 	},
-	"github/valentineap/pyprop8": {
-	"id": "github/valentineap/pyprop8",
-	"title": "github/valentineap/pyprop8",
-	"url": " https://rseng.github.io/software/repository/github/valentineap/pyprop8",
-	"content": "A lightweight  Python code to calculate the seismic response of a layered half-space (including static components), and derivatives of the wavefield wrt source components."
+	"github/bcgsc/arcs": {
+	"id": "github/bcgsc/arcs",
+	"title": "github/bcgsc/arcs",
+	"url": " https://rseng.github.io/software/repository/github/bcgsc/arcs",
+	"content": "🌈Scaffold genome sequence assemblies using linked read sequencing data"
 	},
-	"github/forceflow1049/phast": {
-	"id": "github/forceflow1049/phast",
-	"title": "github/forceflow1049/phast",
-	"url": " https://rseng.github.io/software/repository/github/forceflow1049/phast",
-	"content": "PhAst: A flexible IDL astronomical image viewer"
+	"github/bcgsc/btllib": {
+	"id": "github/bcgsc/btllib",
+	"title": "github/bcgsc/btllib",
+	"url": " https://rseng.github.io/software/repository/github/bcgsc/btllib",
+	"content": "Bioinformatics Technology Lab common code library"
 	},
-	"github/GalSim-developers/GalSim": {
-	"id": "github/GalSim-developers/GalSim",
-	"title": "github/GalSim-developers/GalSim",
-	"url": " https://rseng.github.io/software/repository/github/GalSim-developers/GalSim",
-	"content": "The modular galaxy image simulation toolkit.  Documentation:"
+	"github/bcgsc/ntHash": {
+	"id": "github/bcgsc/ntHash",
+	"title": "github/bcgsc/ntHash",
+	"url": " https://rseng.github.io/software/repository/github/bcgsc/ntHash",
+	"content": "Fast hash function for DNA sequences"
 	},
-	"github/KathrynJones1/catwoman": {
-	"id": "github/KathrynJones1/catwoman",
-	"title": "github/KathrynJones1/catwoman",
-	"url": " https://rseng.github.io/software/repository/github/KathrynJones1/catwoman",
-	"content": "A transit modelling Python package for asymmetric light curves"
+	"github/bcgsc/abyss": {
+	"id": "github/bcgsc/abyss",
+	"title": "github/bcgsc/abyss",
+	"url": " https://rseng.github.io/software/repository/github/bcgsc/abyss",
+	"content": ":microscope: Assemble large genomes using short reads"
 	},
-	"github/PabloMSanAla/fabada": {
-	"id": "github/PabloMSanAla/fabada",
-	"title": "github/PabloMSanAla/fabada",
-	"url": " https://rseng.github.io/software/repository/github/PabloMSanAla/fabada",
-	"content": "Fully Adaptive Bayesian Algorithm for Data Analysis (FABADA) is a new approach of noise reduction methods. In this repository is shown the package developed for this new method based on \citepaper."
+	"github/davidemms/OrthoFinder": {
+	"id": "github/davidemms/OrthoFinder",
+	"title": "github/davidemms/OrthoFinder",
+	"url": " https://rseng.github.io/software/repository/github/davidemms/OrthoFinder",
+	"content": "Phylogenetic orthology inference for comparative genomics"
 	},
-	"github/0x0f0f0f/Metatheory.jl": {
-	"id": "github/0x0f0f0f/Metatheory.jl",
-	"title": "github/0x0f0f0f/Metatheory.jl",
-	"url": " https://rseng.github.io/software/repository/github/0x0f0f0f/Metatheory.jl",
-	"content": "General purpose metaprogramming and algebraic computation library for the Julia programming language"
+	"github/DeepRegNet/DeepReg": {
+	"id": "github/DeepRegNet/DeepReg",
+	"title": "github/DeepRegNet/DeepReg",
+	"url": " https://rseng.github.io/software/repository/github/DeepRegNet/DeepReg",
+	"content": "Medical image registration using deep learning"
 	},
-	"github/atfrank/PyShifts": {
-	"id": "github/atfrank/PyShifts",
-	"title": "github/atfrank/PyShifts",
-	"url": " https://rseng.github.io/software/repository/github/atfrank/PyShifts",
-	"content": "Pyshifts: A Pymol Plugin for Chemical Shift-Based Analysis of Biomolecular Ensembles"
+	"github/AndrewAnnex/SpiceyPy": {
+	"id": "github/AndrewAnnex/SpiceyPy",
+	"title": "github/AndrewAnnex/SpiceyPy",
+	"url": " https://rseng.github.io/software/repository/github/AndrewAnnex/SpiceyPy",
+	"content": "SpiceyPy: a Pythonic Wrapper for the SPICE Toolkit."
 	},
-	"github/JorenSix/Panako": {
-	"id": "github/JorenSix/Panako",
-	"title": "github/JorenSix/Panako",
-	"url": " https://rseng.github.io/software/repository/github/JorenSix/Panako",
-	"content": "The Panako acoustic fingerprinting system."
+	"github/MICCoM/SSAGES-public": {
+	"id": "github/MICCoM/SSAGES-public",
+	"title": "github/MICCoM/SSAGES-public",
+	"url": " https://rseng.github.io/software/repository/github/MICCoM/SSAGES-public",
+	"content": "Software Suite for Advanced General Ensemble Simulations"
 	},
-	"github/JorenSix/Olaf": {
-	"id": "github/JorenSix/Olaf",
-	"title": "github/JorenSix/Olaf",
-	"url": " https://rseng.github.io/software/repository/github/JorenSix/Olaf",
-	"content": "Olaf: Overly Lightweight Acoustic Fingerprinting is a portable acoustic fingerprinting system."
+	"github/ComputationalRegulatoryGenomicsICL/TFBS": {
+	"id": "github/ComputationalRegulatoryGenomicsICL/TFBS",
+	"title": "github/ComputationalRegulatoryGenomicsICL/TFBS",
+	"url": " https://rseng.github.io/software/repository/github/ComputationalRegulatoryGenomicsICL/TFBS",
+	"content": "TFBS perl module"
 	},
-	"github/espnet/espnet": {
-	"id": "github/espnet/espnet",
-	"title": "github/espnet/espnet",
-	"url": " https://rseng.github.io/software/repository/github/espnet/espnet",
-	"content": "End-to-End Speech Processing Toolkit"
+	"github/vojtech-sidorin/quickclump": {
+	"id": "github/vojtech-sidorin/quickclump",
+	"title": "github/vojtech-sidorin/quickclump",
+	"url": " https://rseng.github.io/software/repository/github/vojtech-sidorin/quickclump",
+	"content": "Identify clumps within a 3D FITS datacube."
 	},
-	"github/teamPSG/kNN_Sleep_Scorer_kNNSS": {
-	"id": "github/teamPSG/kNN_Sleep_Scorer_kNNSS",
-	"title": "github/teamPSG/kNN_Sleep_Scorer_kNNSS",
-	"url": " https://rseng.github.io/software/repository/github/teamPSG/kNN_Sleep_Scorer_kNNSS",
-	"content": "A matlab package for automated sleep scoring using the k-nearest neighbors algorithm"
+	"github/hues-platform/cesar-p-core": {
+	"id": "github/hues-platform/cesar-p-core",
+	"title": "github/hues-platform/cesar-p-core",
+	"url": " https://rseng.github.io/software/repository/github/hues-platform/cesar-p-core",
+	"content": "CESAR-P code library"
 	},
-	"github/jbussemaker/SBArchOpt": {
-	"id": "github/jbussemaker/SBArchOpt",
-	"title": "github/jbussemaker/SBArchOpt",
-	"url": " https://rseng.github.io/software/repository/github/jbussemaker/SBArchOpt",
-	"content": "Surrogate-Based Architecture Optimization toolbox"
+	"github/mofanv/darknetz": {
+	"id": "github/mofanv/darknetz",
+	"title": "github/mofanv/darknetz",
+	"url": " https://rseng.github.io/software/repository/github/mofanv/darknetz",
+	"content": "runs several layers of a deep learning model in TrustZone"
 	},
-	"github/inrae/RCaNmodel": {
-	"id": "github/inrae/RCaNmodel",
-	"title": "github/inrae/RCaNmodel",
-	"url": " https://rseng.github.io/software/repository/github/inrae/RCaNmodel",
-	"content": "repository for RCaN and RCaNconstructor"
+	"github/henrikdvn/CRSocket": {
+	"id": "github/henrikdvn/CRSocket",
+	"title": "github/henrikdvn/CRSocket",
+	"url": " https://rseng.github.io/software/repository/github/henrikdvn/CRSocket",
+	"content": "Controller-Responder Socket"
 	},
-	"github/JuliaGeodynamics/GeophysicalModelGenerator.jl": {
-	"id": "github/JuliaGeodynamics/GeophysicalModelGenerator.jl",
-	"title": "github/JuliaGeodynamics/GeophysicalModelGenerator.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaGeodynamics/GeophysicalModelGenerator.jl",
-	"content": "Import, process and interpret geophysical data sets to be used in numerical models."
+	"github/nextflow-io/nextflow": {
+	"id": "github/nextflow-io/nextflow",
+	"title": "github/nextflow-io/nextflow",
+	"url": " https://rseng.github.io/software/repository/github/nextflow-io/nextflow",
+	"content": "A DSL for data-driven computational pipelines"
 	},
-	"github/PetroFit/petrofit": {
-	"id": "github/PetroFit/petrofit",
-	"title": "github/PetroFit/petrofit",
-	"url": " https://rseng.github.io/software/repository/github/PetroFit/petrofit",
-	"content": "Package for calculating Petrosian properties and fitting galaxy light profiles"
+	"github/JLSteenwyk/ggpubfigs": {
+	"id": "github/JLSteenwyk/ggpubfigs",
+	"title": "github/JLSteenwyk/ggpubfigs",
+	"url": " https://rseng.github.io/software/repository/github/JLSteenwyk/ggpubfigs",
+	"content": "colorblind friendly color palettes and ggplot2 graphic system extensions for publication-quality scientific figures"
 	},
-	"github/lahovniktadej/gatree": {
-	"id": "github/lahovniktadej/gatree",
-	"title": "github/lahovniktadej/gatree",
-	"url": " https://rseng.github.io/software/repository/github/lahovniktadej/gatree",
-	"content": "Evolutionary decision tree classifier"
+	"github/kdmurray91/libqcpp": {
+	"id": "github/kdmurray91/libqcpp",
+	"title": "github/kdmurray91/libqcpp",
+	"url": " https://rseng.github.io/software/repository/github/kdmurray91/libqcpp",
+	"content": "libqc++: C++11 library for next-gen sequence quality control and assessment."
 	},
-	"github/FluidityProject/fluidity": {
-	"id": "github/FluidityProject/fluidity",
-	"title": "github/FluidityProject/fluidity",
-	"url": " https://rseng.github.io/software/repository/github/FluidityProject/fluidity",
-	"content": "Fluidity"
+	"github/kdmurray91/libqes": {
+	"id": "github/kdmurray91/libqes",
+	"title": "github/kdmurray91/libqes",
+	"url": " https://rseng.github.io/software/repository/github/kdmurray91/libqes",
+	"content": "A small C library, with a bioinformatic focus. Optimised for speed and a clean API"
 	},
-	"github/rsnemmen/BCES": {
-	"id": "github/rsnemmen/BCES",
-	"title": "github/rsnemmen/BCES",
-	"url": " https://rseng.github.io/software/repository/github/rsnemmen/BCES",
-	"content": "Python module for performing linear regression for data with measurement errors and intrinsic scatter"
+	"github/kdmurray91/axe": {
+	"id": "github/kdmurray91/axe",
+	"title": "github/kdmurray91/axe",
+	"url": " https://rseng.github.io/software/repository/github/kdmurray91/axe",
+	"content": "Rapid competitive read demulitplexer. Made with tries."
 	},
-	"github/Valcin/BE_HaPPy": {
-	"id": "github/Valcin/BE_HaPPy",
-	"title": "github/Valcin/BE_HaPPy",
-	"url": " https://rseng.github.io/software/repository/github/Valcin/BE_HaPPy",
-	"content": "Bias Emulator for Halo Power Spectrum "
+	"github/HenrykHaniewicz/PSRVoid": {
+	"id": "github/HenrykHaniewicz/PSRVoid",
+	"title": "github/HenrykHaniewicz/PSRVoid",
+	"url": " https://rseng.github.io/software/repository/github/HenrykHaniewicz/PSRVoid",
+	"content": "The statistical suite to determine which integrated pulse profiles should go into your times-of-arrival! Also able to mine data from the ATNF catalog."
 	},
-	"github/zhwm/SparsePro_Paper": {
-	"id": "github/zhwm/SparsePro_Paper",
-	"title": "github/zhwm/SparsePro_Paper",
-	"url": " https://rseng.github.io/software/repository/github/zhwm/SparsePro_Paper",
-	"content": "Code repo for SparsePro Paper"
+	"github/wiki/Install-macs2": {
+	"id": "github/wiki/Install-macs2",
+	"title": "github/wiki/Install-macs2",
+	"url": " https://rseng.github.io/software/repository/github/wiki/Install-macs2",
+	"content": "(Model Based Analysis of ChIP-Seq data) a novel algorithm for identifying transcript factor binding sites."
 	},
-	"github/solislemuslab/minaa": {
-	"id": "github/solislemuslab/minaa",
-	"title": "github/solislemuslab/minaa",
-	"url": " https://rseng.github.io/software/repository/github/solislemuslab/minaa",
-	"content": "MiNAA aligns a pair of networks based their topologies and biologies."
+	"github/linnarsson-lab/loompy": {
+	"id": "github/linnarsson-lab/loompy",
+	"title": "github/linnarsson-lab/loompy",
+	"url": " https://rseng.github.io/software/repository/github/linnarsson-lab/loompy",
+	"content": "Python implementation of the Loom file format - http://loompy.org"
 	},
-	"github/arnauqb/Qwind.jl": {
-	"id": "github/arnauqb/Qwind.jl",
-	"title": "github/arnauqb/Qwind.jl",
-	"url": " https://rseng.github.io/software/repository/github/arnauqb/Qwind.jl",
-	"content": "Computation of UV line-driven winds in AGNs"
+	"github/longfei8533/SDC": {
+	"id": "github/longfei8533/SDC",
+	"title": "github/longfei8533/SDC",
+	"url": " https://rseng.github.io/software/repository/github/longfei8533/SDC",
+	"content": "Sex Differences in Cancer"
 	},
-	"github/arnauqb/qwind": {
-	"id": "github/arnauqb/qwind",
-	"title": "github/arnauqb/qwind",
-	"url": " https://rseng.github.io/software/repository/github/arnauqb/qwind",
-	"content": "A non-hydrodynamical model for AGN line-drive winds."
+	"github/bcalden/ClusterPyXT": {
+	"id": "github/bcalden/ClusterPyXT",
+	"title": "github/bcalden/ClusterPyXT",
+	"url": " https://rseng.github.io/software/repository/github/bcalden/ClusterPyXT",
+	"content": "The Galaxy Cluster ‘Pypeline’ for X-ray Temperature Maps"
 	},
-	"github/Theano/Theano": {
-	"id": "github/Theano/Theano",
-	"title": "github/Theano/Theano",
-	"url": " https://rseng.github.io/software/repository/github/Theano/Theano",
-	"content": "Theano is a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently. It can use GPUs and perform efficient symbolic differentiation."
+	"github/iobio-zjut/IPTDFold": {
+	"id": "github/iobio-zjut/IPTDFold",
+	"title": "github/iobio-zjut/IPTDFold",
+	"url": " https://rseng.github.io/software/repository/github/iobio-zjut/IPTDFold",
+	"content": "A de novo protein structure prediction by iterative partition sampling, topology adjustment, and residue-level distance deviation optimization"
 	},
-	"github/Acellera/htmd": {
-	"id": "github/Acellera/htmd",
-	"title": "github/Acellera/htmd",
-	"url": " https://rseng.github.io/software/repository/github/Acellera/htmd",
-	"content": "HTMD: Programming Environment for Molecular Discovery"
+	"github/SwiftVISA/SwiftVISASwift": {
+	"id": "github/SwiftVISA/SwiftVISASwift",
+	"title": "github/SwiftVISA/SwiftVISASwift",
+	"url": " https://rseng.github.io/software/repository/github/SwiftVISA/SwiftVISASwift",
+	"content": "A Swift backend for communicating to instruments over TCPIP over the VISA protocol."
 	},
-	"github/patscott/ddcalc": {
-	"id": "github/patscott/ddcalc",
-	"title": "github/patscott/ddcalc",
-	"url": " https://rseng.github.io/software/repository/github/patscott/ddcalc",
-	"content": "Dark matter direct detection phenomenology package"
+	"github/GilbertLabUCSF/CanDI": {
+	"id": "github/GilbertLabUCSF/CanDI",
+	"title": "github/GilbertLabUCSF/CanDI",
+	"url": " https://rseng.github.io/software/repository/github/GilbertLabUCSF/CanDI",
+	"content": "CanDI - A global cancer data integrator"
 	},
-	"github/patscott/gambit_1.3": {
-	"id": "github/patscott/gambit_1.3",
-	"title": "github/patscott/gambit_1.3",
-	"url": " https://rseng.github.io/software/repository/github/patscott/gambit_1.3",
-	"content": "GAMBIT: The Global and Modular Beyond-the-Standard-Model Inference Tool"
+	"github/michaeltouati/ESVM": {
+	"id": "github/michaeltouati/ESVM",
+	"title": "github/michaeltouati/ESVM",
+	"url": " https://rseng.github.io/software/repository/github/michaeltouati/ESVM",
+	"content": "Finite-volume Vlasov-Maxwell code to study for Plasma Physics simulations"
 	},
-	"github/patscott/pippi": {
-	"id": "github/patscott/pippi",
-	"title": "github/patscott/pippi",
-	"url": " https://rseng.github.io/software/repository/github/patscott/pippi",
-	"content": "Pippi: parse it, plot it.  A program for operating on MCMC chains and related lists of samples from a function or distribution."
+	"github/spectralcode/OCTproZ": {
+	"id": "github/spectralcode/OCTproZ",
+	"title": "github/spectralcode/OCTproZ",
+	"url": " https://rseng.github.io/software/repository/github/spectralcode/OCTproZ",
+	"content": "OCTproZ is an open source software for optical coherence tomography processing and visualization."
 	},
-	"github/timstaley/chimenea": {
-	"id": "github/timstaley/chimenea",
-	"title": "github/timstaley/chimenea",
-	"url": " https://rseng.github.io/software/repository/github/timstaley/chimenea",
-	"content": "Automated image-synthesis of multi-epoch radio-telescope data."
+	"github/XuhanLiu/DrugEx": {
+	"id": "github/XuhanLiu/DrugEx",
+	"title": "github/XuhanLiu/DrugEx",
+	"url": " https://rseng.github.io/software/repository/github/XuhanLiu/DrugEx",
+	"content": "Deep learning toolkit for Drug Design with Pareto-based Multi-Objective optimization in Polypharmacology"
 	},
-	"github/timstaley/amisurvey": {
-	"id": "github/timstaley/amisurvey",
-	"title": "github/timstaley/amisurvey",
-	"url": " https://rseng.github.io/software/repository/github/timstaley/amisurvey",
-	"content": "End-to-end calibration and imaging of AMI-LA data."
+	"github/lbr-stack/lbr_stack_doc": {
+	"id": "github/lbr-stack/lbr_stack_doc",
+	"title": "github/lbr-stack/lbr_stack_doc",
+	"url": " https://rseng.github.io/software/repository/github/lbr-stack/lbr_stack_doc",
+	"content": "Documentation for the LBR-Stack"
 	},
-	"github/timstaley/voevent-parse": {
-	"id": "github/timstaley/voevent-parse",
-	"title": "github/timstaley/voevent-parse",
-	"url": " https://rseng.github.io/software/repository/github/timstaley/voevent-parse",
-	"content": "VOEvent parsing and manipulation routines built on lxml.objectify."
+	"github/Sulstice/cocktail-shaker": {
+	"id": "github/Sulstice/cocktail-shaker",
+	"title": "github/Sulstice/cocktail-shaker",
+	"url": " https://rseng.github.io/software/repository/github/Sulstice/cocktail-shaker",
+	"content": "None"
 	},
-	"github/tbisbas/PDFchem": {
-	"id": "github/tbisbas/PDFchem",
-	"title": "github/tbisbas/PDFchem",
-	"url": " https://rseng.github.io/software/repository/github/tbisbas/PDFchem",
-	"content": "Estimate the average abundance of species from Av-PDFs"
+	"github/jmcbroome/BTE": {
+	"id": "github/jmcbroome/BTE",
+	"title": "github/jmcbroome/BTE",
+	"url": " https://rseng.github.io/software/repository/github/jmcbroome/BTE",
+	"content": "Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit"
 	},
-	"github/bic-nirrh/precocity": {
-	"id": "github/bic-nirrh/precocity",
-	"title": "github/bic-nirrh/precocity",
-	"url": " https://rseng.github.io/software/repository/github/bic-nirrh/precocity",
-	"content": "Database and enrichment analysis of genes associated with precocious puberty"
+	"github/telegraphic/fits2hdf": {
+	"id": "github/telegraphic/fits2hdf",
+	"title": "github/telegraphic/fits2hdf",
+	"url": " https://rseng.github.io/software/repository/github/telegraphic/fits2hdf",
+	"content": "FITS to HDFITS conversion utility"
 	},
-	"github/henrysky/astroNN": {
-	"id": "github/henrysky/astroNN",
-	"title": "github/henrysky/astroNN",
-	"url": " https://rseng.github.io/software/repository/github/henrysky/astroNN",
-	"content": "Deep Learning for Astronomers with Tensorflow"
+	"github/telegraphic/pygsm": {
+	"id": "github/telegraphic/pygsm",
+	"title": "github/telegraphic/pygsm",
+	"url": " https://rseng.github.io/software/repository/github/telegraphic/pygsm",
+	"content": "Python implementation of the Global Sky Model (GSM) for the radio sky between 10 MHz - 5 THz"
 	},
-	"github/katholt/Kaptive": {
-	"id": "github/katholt/Kaptive",
-	"title": "github/katholt/Kaptive",
-	"url": " https://rseng.github.io/software/repository/github/katholt/Kaptive",
-	"content": "obtain information about K and O types for Klebsiella genome assemblies"
+	"github/fbreitwieser/krakenuniq": {
+	"id": "github/fbreitwieser/krakenuniq",
+	"title": "github/fbreitwieser/krakenuniq",
+	"url": " https://rseng.github.io/software/repository/github/fbreitwieser/krakenuniq",
+	"content": "🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results"
 	},
-	"github/katholt/Kleborate": {
-	"id": "github/katholt/Kleborate",
-	"title": "github/katholt/Kleborate",
-	"url": " https://rseng.github.io/software/repository/github/katholt/Kleborate",
-	"content": "tool to screen Klebsiella genome assemblies"
+	"github/julia-wrobel/registr": {
+	"id": "github/julia-wrobel/registr",
+	"title": "github/julia-wrobel/registr",
+	"url": " https://rseng.github.io/software/repository/github/julia-wrobel/registr",
+	"content": "Register exponential family curves"
 	},
-	"github/katholt/srst2": {
-	"id": "github/katholt/srst2",
-	"title": "github/katholt/srst2",
-	"url": " https://rseng.github.io/software/repository/github/katholt/srst2",
-	"content": "Short Read Sequence Typing for Bacterial Pathogens"
+	"github/JuliaHEP/UnROOT.jl": {
+	"id": "github/JuliaHEP/UnROOT.jl",
+	"title": "github/JuliaHEP/UnROOT.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaHEP/UnROOT.jl",
+	"content": "Native Julia I/O package to work with CERN ROOT files"
 	},
-	"github/Anirbancosmo/limpy": {
-	"id": "github/Anirbancosmo/limpy",
-	"title": "github/Anirbancosmo/limpy",
-	"url": " https://rseng.github.io/software/repository/github/Anirbancosmo/limpy",
-	"content": "A python package for multi-line intensity mapping"
+	"github/Filter-Bubble/stroll": {
+	"id": "github/Filter-Bubble/stroll",
+	"title": "github/Filter-Bubble/stroll",
+	"url": " https://rseng.github.io/software/repository/github/Filter-Bubble/stroll",
+	"content": "Graph based Sematic Role Labeller"
 	},
-	"github/klb2/qmkpy": {
-	"id": "github/klb2/qmkpy",
-	"title": "github/klb2/qmkpy",
-	"url": " https://rseng.github.io/software/repository/github/klb2/qmkpy",
-	"content": "Python testbed for the Quadratic Multiple Knapsack Problem (QMKP)"
+	"github/Filter-Bubble/e2e-Dutch": {
+	"id": "github/Filter-Bubble/e2e-Dutch",
+	"title": "github/Filter-Bubble/e2e-Dutch",
+	"url": " https://rseng.github.io/software/repository/github/Filter-Bubble/e2e-Dutch",
+	"content": "Code for e2e coref model in Dutch"
 	},
-	"github/emossoux/LIFELINE": {
-	"id": "github/emossoux/LIFELINE",
-	"title": "github/emossoux/LIFELINE",
-	"url": " https://rseng.github.io/software/repository/github/emossoux/LIFELINE",
-	"content": "Program for the computation of line profile in colliding wind binaries"
+	"github/rajeshrinet/pystokes": {
+	"id": "github/rajeshrinet/pystokes",
+	"title": "github/rajeshrinet/pystokes",
+	"url": " https://rseng.github.io/software/repository/github/rajeshrinet/pystokes",
+	"content": "PyStokes: phoresis and Stokesian hydrodynamics in Python: https://github.com/rajeshrinet/pystokes"
 	},
-	"github/Singh-Lab/uKIN": {
-	"id": "github/Singh-Lab/uKIN",
-	"title": "github/Singh-Lab/uKIN",
-	"url": " https://rseng.github.io/software/repository/github/Singh-Lab/uKIN",
-	"content": "Using Knowledge In Networks"
+	"github/franciscovillaescusa/Pylians": {
+	"id": "github/franciscovillaescusa/Pylians",
+	"title": "github/franciscovillaescusa/Pylians",
+	"url": " https://rseng.github.io/software/repository/github/franciscovillaescusa/Pylians",
+	"content": "Libraries to analyze numerical simulations"
 	},
-	"github/Singh-Lab/DeMaSk": {
-	"id": "github/Singh-Lab/DeMaSk",
-	"title": "github/Singh-Lab/DeMaSk",
-	"url": " https://rseng.github.io/software/repository/github/Singh-Lab/DeMaSk",
-	"content": "Prediction of protein substitution impact using a directional substitution matrix and homolog alignments"
+	"github/franciscovillaescusa/Pylians3": {
+	"id": "github/franciscovillaescusa/Pylians3",
+	"title": "github/franciscovillaescusa/Pylians3",
+	"url": " https://rseng.github.io/software/repository/github/franciscovillaescusa/Pylians3",
+	"content": "Libraries to analyze numerical simulations (python3)"
 	},
-	"github/KorfLab/SNAP": {
-	"id": "github/KorfLab/SNAP",
-	"title": "github/KorfLab/SNAP",
-	"url": " https://rseng.github.io/software/repository/github/KorfLab/SNAP",
-	"content": "Gene prediction software"
+	"github/jakeown/astroclover": {
+	"id": "github/jakeown/astroclover",
+	"title": "github/jakeown/astroclover",
+	"url": " https://rseng.github.io/software/repository/github/jakeown/astroclover",
+	"content": "Convnet Line-fitting Of Velocities in Emission-line Regions (CLOVER)"
 	},
-	"github/schlafly/crowdsource": {
-	"id": "github/schlafly/crowdsource",
-	"title": "github/schlafly/crowdsource",
-	"url": " https://rseng.github.io/software/repository/github/schlafly/crowdsource",
-	"content": "Crowded field photometry pipeline"
+	"github/m-dadej/MarSwitching.jl": {
+	"id": "github/m-dadej/MarSwitching.jl",
+	"title": "github/m-dadej/MarSwitching.jl",
+	"url": " https://rseng.github.io/software/repository/github/m-dadej/MarSwitching.jl",
+	"content": "MarSwitching.jl: Julia package for Markov switching dynamic models"
 	},
-	"github/NMBU-Data-Science/RENT": {
-	"id": "github/NMBU-Data-Science/RENT",
-	"title": "github/NMBU-Data-Science/RENT",
-	"url": " https://rseng.github.io/software/repository/github/NMBU-Data-Science/RENT",
-	"content": "Feature selection method based on repeated elastic net."
+	"github/bioinfo-ut/GenomeTester4": {
+	"id": "github/bioinfo-ut/GenomeTester4",
+	"title": "github/bioinfo-ut/GenomeTester4",
+	"url": " https://rseng.github.io/software/repository/github/bioinfo-ut/GenomeTester4",
+	"content": "A toolkit for performing set operations - union, intersection and complement - on k-mer lists."
 	},
-	"github/SpaceOdyssey/Blobby3D": {
-	"id": "github/SpaceOdyssey/Blobby3D",
-	"title": "github/SpaceOdyssey/Blobby3D",
-	"url": " https://rseng.github.io/software/repository/github/SpaceOdyssey/Blobby3D",
-	"content": "Blobby3D is a tool to perform Bayesian inference for gas kinematics on emission line observations of galaxies using Integral Field Spectroscopy."
+	"github/bioinfo-ut/PlasmidSeeker": {
+	"id": "github/bioinfo-ut/PlasmidSeeker",
+	"title": "github/bioinfo-ut/PlasmidSeeker",
+	"url": " https://rseng.github.io/software/repository/github/bioinfo-ut/PlasmidSeeker",
+	"content": "A k-mer based program for the identification of known plasmids from whole-genome sequencing reads"
 	},
-	"github/tensorly/viz": {
-	"id": "github/tensorly/viz",
-	"title": "github/tensorly/viz",
-	"url": " https://rseng.github.io/software/repository/github/tensorly/viz",
-	"content": "Easy visualization and evaluation of matrix and tensor factorization models"
+	"github/tlambert03/pycudadecon": {
+	"id": "github/tlambert03/pycudadecon",
+	"title": "github/tlambert03/pycudadecon",
+	"url": " https://rseng.github.io/software/repository/github/tlambert03/pycudadecon",
+	"content": "Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy"
 	},
-	"github/aranyics/ReDCM": {
-	"id": "github/aranyics/ReDCM",
-	"title": "github/aranyics/ReDCM",
-	"url": " https://rseng.github.io/software/repository/github/aranyics/ReDCM",
-	"content": "Reimplementation of DCM12 algorithm in R language"
+	"github/hydroframe/subsettools": {
+	"id": "github/hydroframe/subsettools",
+	"title": "github/hydroframe/subsettools",
+	"url": " https://rseng.github.io/software/repository/github/hydroframe/subsettools",
+	"content": "Subsetting tools and utilities for ParFlow hydrological modeling"
 	},
-	"github/rqtl/qtl2": {
-	"id": "github/rqtl/qtl2",
-	"title": "github/rqtl/qtl2",
-	"url": " https://rseng.github.io/software/repository/github/rqtl/qtl2",
-	"content": "QTL analysis software for high-dimensional data and complex cross designs"
+	"github/hydroframe/hf_hydrodata": {
+	"id": "github/hydroframe/hf_hydrodata",
+	"title": "github/hydroframe/hf_hydrodata",
+	"url": " https://rseng.github.io/software/repository/github/hydroframe/hf_hydrodata",
+	"content": "None"
 	},
-	"github/bluefoxr/COINr": {
-	"id": "github/bluefoxr/COINr",
-	"title": "github/bluefoxr/COINr",
-	"url": " https://rseng.github.io/software/repository/github/bluefoxr/COINr",
-	"content": "COINr"
+	"github/nlesc-nano/ceiba-cli": {
+	"id": "github/nlesc-nano/ceiba-cli",
+	"title": "github/nlesc-nano/ceiba-cli",
+	"url": " https://rseng.github.io/software/repository/github/nlesc-nano/ceiba-cli",
+	"content": "command-line interface to compute and molecular properties from a database"
 	},
-	"github/phineasng/DECODE": {
-	"id": "github/phineasng/DECODE",
-	"title": "github/phineasng/DECODE",
-	"url": " https://rseng.github.io/software/repository/github/phineasng/DECODE",
-	"content": "Code Release for the DECODE submission (ISMB2022)"
+	"github/nlesc-nano/flamingo": {
+	"id": "github/nlesc-nano/flamingo",
+	"title": "github/nlesc-nano/flamingo",
+	"url": " https://rseng.github.io/software/repository/github/nlesc-nano/flamingo",
+	"content": "Computation and filtering of molecular properties"
 	},
-	"github/travisseymour/EPICpy": {
-	"id": "github/travisseymour/EPICpy",
-	"title": "github/travisseymour/EPICpy",
-	"url": " https://rseng.github.io/software/repository/github/travisseymour/EPICpy",
-	"content": "Cross Platform Python Interface for EPIC modeling using C++ EPIClib backend"
+	"github/nlesc-nano/swan": {
+	"id": "github/nlesc-nano/swan",
+	"title": "github/nlesc-nano/swan",
+	"url": " https://rseng.github.io/software/repository/github/nlesc-nano/swan",
+	"content": "Screening Workflows And statistical models to predict new materials"
 	},
-	"github/jorisparet/partycls": {
-	"id": "github/jorisparet/partycls",
-	"title": "github/jorisparet/partycls",
-	"url": " https://rseng.github.io/software/repository/github/jorisparet/partycls",
-	"content": "Unsupervised learning of structure in systems of interacting particles."
+	"github/nlesc-nano/insilico-server": {
+	"id": "github/nlesc-nano/insilico-server",
+	"title": "github/nlesc-nano/insilico-server",
+	"url": " https://rseng.github.io/software/repository/github/nlesc-nano/insilico-server",
+	"content": "web server to handle the properties"
 	},
-	"github/abinit/abinit": {
-	"id": "github/abinit/abinit",
-	"title": "github/abinit/abinit",
-	"url": " https://rseng.github.io/software/repository/github/abinit/abinit",
-	"content": "The official github mirror of the Abinit repository. We welcome bug fixes and improvements. Note that most of the active developments are hosted on our https://gitlab.abinit.org/ server.  Before embarking on making significant changes, please contact the Abinit group."
+	"github/nlesc-nano/Moka": {
+	"id": "github/nlesc-nano/Moka",
+	"title": "github/nlesc-nano/Moka",
+	"url": " https://rseng.github.io/software/repository/github/nlesc-nano/Moka",
+	"content": "command line interface to compute and molecular properties from a database"
 	},
-	"github/llt1836/TE-HI-GCN": {
-	"id": "github/llt1836/TE-HI-GCN",
-	"title": "github/llt1836/TE-HI-GCN",
-	"url": " https://rseng.github.io/software/repository/github/llt1836/TE-HI-GCN",
-	"content": "None"
+	"github/nlesc-nano/ceiba": {
+	"id": "github/nlesc-nano/ceiba",
+	"title": "github/nlesc-nano/ceiba",
+	"url": " https://rseng.github.io/software/repository/github/nlesc-nano/ceiba",
+	"content": "Web service to manage scientific simulation data"
 	},
-	"github/mishioo/tesliper": {
-	"id": "github/mishioo/tesliper",
-	"title": "github/mishioo/tesliper",
-	"url": " https://rseng.github.io/software/repository/github/mishioo/tesliper",
-	"content": "Theoretical Spectroscopist&#39;s Little Helper"
+	"github/nlesc-nano/CAT": {
+	"id": "github/nlesc-nano/CAT",
+	"title": "github/nlesc-nano/CAT",
+	"url": " https://rseng.github.io/software/repository/github/nlesc-nano/CAT",
+	"content": "A collection of tools designed for the automatic construction, and subsequent analysis, of chemical compounds."
 	},
-	"github/astro-informatics/sleplet": {
-	"id": "github/astro-informatics/sleplet",
-	"title": "github/astro-informatics/sleplet",
-	"url": " https://rseng.github.io/software/repository/github/astro-informatics/sleplet",
-	"content": "Slepian Scale-Discretised Wavelets"
+	"github/VMBoehm/MADLens": {
+	"id": "github/VMBoehm/MADLens",
+	"title": "github/VMBoehm/MADLens",
+	"url": " https://rseng.github.io/software/repository/github/VMBoehm/MADLens",
+	"content": "a differentiable lensing simulator"
 	},
-	"github/astro-informatics/s2let": {
-	"id": "github/astro-informatics/s2let",
-	"title": "github/astro-informatics/s2let",
-	"url": " https://rseng.github.io/software/repository/github/astro-informatics/s2let",
-	"content": "Fast wavelet transforms on the sphere."
+	"github/andersen-lab/html": {
+	"id": "github/andersen-lab/html",
+	"title": "github/andersen-lab/html",
+	"url": " https://rseng.github.io/software/repository/github/andersen-lab/html",
+	"content": "is a computational package that contains functions broadly useful for viral amplicon-based sequencing."
 	},
-	"github/astro-informatics/flaglet-archive": {
-	"id": "github/astro-informatics/flaglet-archive",
-	"title": "github/astro-informatics/flaglet-archive",
-	"url": " https://rseng.github.io/software/repository/github/astro-informatics/flaglet-archive",
-	"content": "Fast and exact wavelet transform on the ball"
+	"github/andersen-lab/ivar": {
+	"id": "github/andersen-lab/ivar",
+	"title": "github/andersen-lab/ivar",
+	"url": " https://rseng.github.io/software/repository/github/andersen-lab/ivar",
+	"content": "iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing."
 	},
-	"github/astro-informatics/stringgen": {
-	"id": "github/astro-informatics/stringgen",
-	"title": "github/astro-informatics/stringgen",
-	"url": " https://rseng.github.io/software/repository/github/astro-informatics/stringgen",
-	"content": "Scattering based cosmic string emulation"
+	"github/andersen-lab/Freyja": {
+	"id": "github/andersen-lab/Freyja",
+	"title": "github/andersen-lab/Freyja",
+	"url": " https://rseng.github.io/software/repository/github/andersen-lab/Freyja",
+	"content": "Depth-weighted De-Mixing "
 	},
-	"github/astro-informatics/s2fft": {
-	"id": "github/astro-informatics/s2fft",
-	"title": "github/astro-informatics/s2fft",
-	"url": " https://rseng.github.io/software/repository/github/astro-informatics/s2fft",
-	"content": "Differentiable and accelerated spherical transforms with JAX"
+	"github/jpcoles/mosaic": {
+	"id": "github/jpcoles/mosaic",
+	"title": "github/jpcoles/mosaic",
+	"url": " https://rseng.github.io/software/repository/github/jpcoles/mosaic",
+	"content": "Multipole Operators in Symbols, Automatically Improved and Condensed"
 	},
-	"github/astro-informatics/massmappy": {
-	"id": "github/astro-informatics/massmappy",
-	"title": "github/astro-informatics/massmappy",
-	"url": " https://rseng.github.io/software/repository/github/astro-informatics/massmappy",
-	"content": "Mapping dark matter on the celestial sphere"
+	"github/jpcoles/glass": {
+	"id": "github/jpcoles/glass",
+	"title": "github/jpcoles/glass",
+	"url": " https://rseng.github.io/software/repository/github/jpcoles/glass",
+	"content": "A parallel, free-form gravitational lens modeling tool and framework"
 	},
-	"github/astro-informatics/flag-archive": {
-	"id": "github/astro-informatics/flag-archive",
-	"title": "github/astro-informatics/flag-archive",
-	"url": " https://rseng.github.io/software/repository/github/astro-informatics/flag-archive",
-	"content": "Fast Fourier-Laguerre transform on the ball and exact spherical Bessel and Fourier-Bessel transforms"
+	"github/thachnguyen/CRISPRnano": {
+	"id": "github/thachnguyen/CRISPRnano",
+	"title": "github/thachnguyen/CRISPRnano",
+	"url": " https://rseng.github.io/software/repository/github/thachnguyen/CRISPRnano",
+	"content": "A simple website analyzes CRISPR experiment for Oxford Nanopore Sequencing data."
 	},
-	"github/astro-informatics/ssht": {
-	"id": "github/astro-informatics/ssht",
-	"title": "github/astro-informatics/ssht",
-	"url": " https://rseng.github.io/software/repository/github/astro-informatics/ssht",
-	"content": "Fast and exact spin spherical harmonic transforms"
+	"github/kpenev/poet": {
+	"id": "github/kpenev/poet",
+	"title": "github/kpenev/poet",
+	"url": " https://rseng.github.io/software/repository/github/kpenev/poet",
+	"content": "Documentation at:"
 	},
-	"github/astro-informatics/QuantifAI": {
-	"id": "github/astro-informatics/QuantifAI",
-	"title": "github/astro-informatics/QuantifAI",
-	"url": " https://rseng.github.io/software/repository/github/astro-informatics/QuantifAI",
-	"content": "PyTorch-based RI imaging reconstruction package with scalable Bayesian uncertainty quantification relying on data-driven (learned) priors"
+	"github/Heldenkombinat/Logodetect": {
+	"id": "github/Heldenkombinat/Logodetect",
+	"title": "github/Heldenkombinat/Logodetect",
+	"url": " https://rseng.github.io/software/repository/github/Heldenkombinat/Logodetect",
+	"content": "Find logos in images and videos in just one-shot. Never be embarrassed again to say that you have a small data situation!"
 	},
-	"github/astro-informatics/RequiSim": {
-	"id": "github/astro-informatics/RequiSim",
-	"title": "github/astro-informatics/RequiSim",
-	"url": " https://rseng.github.io/software/repository/github/astro-informatics/RequiSim",
-	"content": "None"
+	"github/davidebolo1993/VISOR": {
+	"id": "github/davidebolo1993/VISOR",
+	"title": "github/davidebolo1993/VISOR",
+	"url": " https://rseng.github.io/software/repository/github/davidebolo1993/VISOR",
+	"content": "VarIant SimulatOR for short, long and linked reads"
 	},
-	"github/astro-informatics/s2": {
-	"id": "github/astro-informatics/s2",
-	"title": "github/astro-informatics/s2",
-	"url": " https://rseng.github.io/software/repository/github/astro-informatics/s2",
-	"content": "Functions on the sphere"
+	"github/davidebolo1993/TRiCoLOR": {
+	"id": "github/davidebolo1993/TRiCoLOR",
+	"title": "github/davidebolo1993/TRiCoLOR",
+	"url": " https://rseng.github.io/software/repository/github/davidebolo1993/TRiCoLOR",
+	"content": "Tadem Repeats Caller for LOng Reads"
 	},
-	"github/astro-informatics/DarkMappy": {
-	"id": "github/astro-informatics/DarkMappy",
-	"title": "github/astro-informatics/DarkMappy",
-	"url": " https://rseng.github.io/software/repository/github/astro-informatics/DarkMappy",
-	"content": "Scalable mapping of the dark universe"
+	"github/dparks1134/RefineM": {
+	"id": "github/dparks1134/RefineM",
+	"title": "github/dparks1134/RefineM",
+	"url": " https://rseng.github.io/software/repository/github/dparks1134/RefineM",
+	"content": "A toolbox for improving metagenome-assembled genomes."
 	},
-	"github/astro-informatics/harmonic": {
-	"id": "github/astro-informatics/harmonic",
-	"title": "github/astro-informatics/harmonic",
-	"url": " https://rseng.github.io/software/repository/github/astro-informatics/harmonic",
-	"content": "Machine learning assisted marginal likelihood (Bayesian evidence) estimation for Bayesian model selection"
+	"github/MultiQC/MultiQC": {
+	"id": "github/MultiQC/MultiQC",
+	"title": "github/MultiQC/MultiQC",
+	"url": " https://rseng.github.io/software/repository/github/MultiQC/MultiQC",
+	"content": "Aggregate results from bioinformatics analyses across many samples into a single report."
 	},
-	"github/astro-informatics/comb": {
-	"id": "github/astro-informatics/comb",
-	"title": "github/astro-informatics/comb",
-	"url": " https://rseng.github.io/software/repository/github/astro-informatics/comb",
-	"content": "Compact object simulations on the sphere"
+	"github/sunnyvagnozzi/Braneworld-extra-dimensions": {
+	"id": "github/sunnyvagnozzi/Braneworld-extra-dimensions",
+	"title": "github/sunnyvagnozzi/Braneworld-extra-dimensions",
+	"url": " https://rseng.github.io/software/repository/github/sunnyvagnozzi/Braneworld-extra-dimensions",
+	"content": "None"
 	},
-	"github/NarlikarLab/exoDIVERSITY": {
-	"id": "github/NarlikarLab/exoDIVERSITY",
-	"title": "github/NarlikarLab/exoDIVERSITY",
-	"url": " https://rseng.github.io/software/repository/github/NarlikarLab/exoDIVERSITY",
+	"github/sagepublishing/rejected_article_tracker_pkg": {
+	"id": "github/sagepublishing/rejected_article_tracker_pkg",
+	"title": "github/sagepublishing/rejected_article_tracker_pkg",
+	"url": " https://rseng.github.io/software/repository/github/sagepublishing/rejected_article_tracker_pkg",
 	"content": "None"
 	},
-	"github/doriancazeneuve/ODNet": {
-	"id": "github/doriancazeneuve/ODNet",
-	"title": "github/doriancazeneuve/ODNet",
-	"url": " https://rseng.github.io/software/repository/github/doriancazeneuve/ODNet",
-	"content": "ODNet : Asteroid Occultation Detection Convolutional Neural Network"
+	"github/dieghernan/tidyterra": {
+	"id": "github/dieghernan/tidyterra",
+	"title": "github/dieghernan/tidyterra",
+	"url": " https://rseng.github.io/software/repository/github/dieghernan/tidyterra",
+	"content": "tidyverse and ggplot2 methods for terra spatial objects"
 	},
-	"github/Muhammad-Arif-NUST/BVP_Pred_Unb": {
-	"id": "github/Muhammad-Arif-NUST/BVP_Pred_Unb",
-	"title": "github/Muhammad-Arif-NUST/BVP_Pred_Unb",
-	"url": " https://rseng.github.io/software/repository/github/Muhammad-Arif-NUST/BVP_Pred_Unb",
-	"content": "None"
+	"github/pacificbiosciences/bam2fastx": {
+	"id": "github/pacificbiosciences/bam2fastx",
+	"title": "github/pacificbiosciences/bam2fastx",
+	"url": " https://rseng.github.io/software/repository/github/pacificbiosciences/bam2fastx",
+	"content": "Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files."
 	},
-	"github/BioGearsEngine/core": {
-	"id": "github/BioGearsEngine/core",
-	"title": "github/BioGearsEngine/core",
-	"url": " https://rseng.github.io/software/repository/github/BioGearsEngine/core",
-	"content": "Repository for libbiogears and all core utilities"
+	"github/juliotux/astropop": {
+	"id": "github/juliotux/astropop",
+	"title": "github/juliotux/astropop",
+	"url": " https://rseng.github.io/software/repository/github/juliotux/astropop",
+	"content": "The (non) famous ASTROnomical POlarimetry and Photometry pipeline"
 	},
-	"github/nigyta/dfast_core": {
-	"id": "github/nigyta/dfast_core",
-	"title": "github/nigyta/dfast_core",
-	"url": " https://rseng.github.io/software/repository/github/nigyta/dfast_core",
-	"content": "is a flexible and customizable pipeline for prokaryotic genome annotation as well as data submission to the INSDC."
+	"github/e-mental-health/orange-hackathon": {
+	"id": "github/e-mental-health/orange-hackathon",
+	"title": "github/e-mental-health/orange-hackathon",
+	"url": " https://rseng.github.io/software/repository/github/e-mental-health/orange-hackathon",
+	"content": "Orange modules for text processing in the project What Works When for Whom? "
 	},
-	"github/theia-dev/Qiber3D": {
-	"id": "github/theia-dev/Qiber3D",
-	"title": "github/theia-dev/Qiber3D",
-	"url": " https://rseng.github.io/software/repository/github/theia-dev/Qiber3D",
-	"content": "Automated quantification of fibrous networks"
+	"github/e-mental-health/data-processing": {
+	"id": "github/e-mental-health/data-processing",
+	"title": "github/e-mental-health/data-processing",
+	"url": " https://rseng.github.io/software/repository/github/e-mental-health/data-processing",
+	"content": "Data processing scripts for the project What Works When for Whom?"
 	},
-	"github/nicokurtovic/SIMIO": {
-	"id": "github/nicokurtovic/SIMIO",
-	"title": "github/nicokurtovic/SIMIO",
-	"url": " https://rseng.github.io/software/repository/github/nicokurtovic/SIMIO",
-	"content": "SIMIO: from SIMulatIons to Observations"
+	"github/mslonina/Mechanic": {
+	"id": "github/mslonina/Mechanic",
+	"title": "github/mslonina/Mechanic",
+	"url": " https://rseng.github.io/software/repository/github/mslonina/Mechanic",
+	"content": "The MPI/HDF code framework and task management system"
 	},
-	"github/21cmfast/21cmEMU": {
-	"id": "github/21cmfast/21cmEMU",
-	"title": "github/21cmfast/21cmEMU",
-	"url": " https://rseng.github.io/software/repository/github/21cmfast/21cmEMU",
-	"content": "An emulator of 21cmFAST summaries."
+	"github/Yomguithereal/talisman": {
+	"id": "github/Yomguithereal/talisman",
+	"title": "github/Yomguithereal/talisman",
+	"url": " https://rseng.github.io/software/repository/github/Yomguithereal/talisman",
+	"content": "Straightforward fuzzy matching, information retrieval and NLP building blocks for JavaScript."
 	},
-	"github/nci/scores": {
-	"id": "github/nci/scores",
-	"title": "github/nci/scores",
-	"url": " https://rseng.github.io/software/repository/github/nci/scores",
-	"content": "Metrics for the verification, evaluation and optimisation of forecasts, predictions or models."
+	"github/RuiningZHAO/wcpy": {
+	"id": "github/RuiningZHAO/wcpy",
+	"title": "github/RuiningZHAO/wcpy",
+	"url": " https://rseng.github.io/software/repository/github/RuiningZHAO/wcpy",
+	"content": "A UI for wavelength calibration."
 	},
-	"github/CosmoTool/ECLIPSE": {
-	"id": "github/CosmoTool/ECLIPSE",
-	"title": "github/CosmoTool/ECLIPSE",
-	"url": " https://rseng.github.io/software/repository/github/CosmoTool/ECLIPSE",
-	"content": "None"
+	"github/imcgreer/simqso": {
+	"id": "github/imcgreer/simqso",
+	"title": "github/imcgreer/simqso",
+	"url": " https://rseng.github.io/software/repository/github/imcgreer/simqso",
+	"content": "Module for generating simulated quasar spectra"
 	},
-	"github/Filter-Bubble/e2e-Dutch": {
-	"id": "github/Filter-Bubble/e2e-Dutch",
-	"title": "github/Filter-Bubble/e2e-Dutch",
-	"url": " https://rseng.github.io/software/repository/github/Filter-Bubble/e2e-Dutch",
-	"content": "Code for e2e coref model in Dutch"
+	"github/TRI-AMDD/GMP-featurizer": {
+	"id": "github/TRI-AMDD/GMP-featurizer",
+	"title": "github/TRI-AMDD/GMP-featurizer",
+	"url": " https://rseng.github.io/software/repository/github/TRI-AMDD/GMP-featurizer",
+	"content": "Feature calculator for GMP features"
 	},
-	"github/Filter-Bubble/stroll": {
-	"id": "github/Filter-Bubble/stroll",
-	"title": "github/Filter-Bubble/stroll",
-	"url": " https://rseng.github.io/software/repository/github/Filter-Bubble/stroll",
-	"content": "Graph based Sematic Role Labeller"
+	"github/agshumate/LiftoffTools": {
+	"id": "github/agshumate/LiftoffTools",
+	"title": "github/agshumate/LiftoffTools",
+	"url": " https://rseng.github.io/software/repository/github/agshumate/LiftoffTools",
+	"content": "is a toolkit to compare genes lifted between genome assemblies."
 	},
-	"github/isce-framework/dolphin": {
-	"id": "github/isce-framework/dolphin",
-	"title": "github/isce-framework/dolphin",
-	"url": " https://rseng.github.io/software/repository/github/isce-framework/dolphin",
-	"content": "InSAR phase linking library for PS/DS processing"
+	"github/megbedell/wobble": {
+	"id": "github/megbedell/wobble",
+	"title": "github/megbedell/wobble",
+	"url": " https://rseng.github.io/software/repository/github/megbedell/wobble",
+	"content": "precise data-driven RV fitting, now with tellurics!"
 	},
-	"github/oliverphilcox/encore": {
-	"id": "github/oliverphilcox/encore",
-	"title": "github/oliverphilcox/encore",
-	"url": " https://rseng.github.io/software/repository/github/oliverphilcox/encore",
-	"content": "encore: Efficient isotropic 2-, 3-, 4-, 5- and 6-point correlation functions in C++ and CUDA"
+	"github/ericcombiolab/LRTK": {
+	"id": "github/ericcombiolab/LRTK",
+	"title": "github/ericcombiolab/LRTK",
+	"url": " https://rseng.github.io/software/repository/github/ericcombiolab/LRTK",
+	"content": "A unified and versatile toolkit for analyzing Linked-Read sequencing data"
 	},
-	"github/oliverphilcox/Spectra-Without-Windows": {
-	"id": "github/oliverphilcox/Spectra-Without-Windows",
-	"title": "github/oliverphilcox/Spectra-Without-Windows",
-	"url": " https://rseng.github.io/software/repository/github/oliverphilcox/Spectra-Without-Windows",
-	"content": "Estimators and data for window-free analysis of power spectra and bispectra"
+	"github/cicirello/rho-mu": {
+	"id": "github/cicirello/rho-mu",
+	"title": "github/cicirello/rho-mu",
+	"url": " https://rseng.github.io/software/repository/github/cicirello/rho-mu",
+	"content": "ρμ - a Java library of Randomization enHancements and Other Math Utilities"
 	},
-	"github/oliverphilcox/PolyBin3D": {
-	"id": "github/oliverphilcox/PolyBin3D",
-	"title": "github/oliverphilcox/PolyBin3D",
-	"url": " https://rseng.github.io/software/repository/github/oliverphilcox/PolyBin3D",
-	"content": "Binned polyspectrum estimation for 3D large-scale structure, optionally mask-deconvolved "
+	"github/cicirello/Chips-n-Salsa": {
+	"id": "github/cicirello/Chips-n-Salsa",
+	"title": "github/cicirello/Chips-n-Salsa",
+	"url": " https://rseng.github.io/software/repository/github/cicirello/Chips-n-Salsa",
+	"content": "Chips-n-Salsa - A Java library of customizable, hybridizable, iterative, parallel, stochastic, and self-adaptive local search algorithms"
 	},
-	"github/oliverphilcox/EffectiveHalos": {
-	"id": "github/oliverphilcox/EffectiveHalos",
-	"title": "github/oliverphilcox/EffectiveHalos",
-	"url": " https://rseng.github.io/software/repository/github/oliverphilcox/EffectiveHalos",
-	"content": "A 1% accurate model of the matter power spectrum and cluster counts covariance, accurate to k = 1 h/Mpc."
+	"github/sensein/etelemetry-client": {
+	"id": "github/sensein/etelemetry-client",
+	"title": "github/sensein/etelemetry-client",
+	"url": " https://rseng.github.io/software/repository/github/sensein/etelemetry-client",
+	"content": "Etelemetry client"
 	},
-	"github/oliverphilcox/RascalC": {
-	"id": "github/oliverphilcox/RascalC",
-	"title": "github/oliverphilcox/RascalC",
-	"url": " https://rseng.github.io/software/repository/github/oliverphilcox/RascalC",
-	"content": "RascalC: A Fast Code for Galaxy Covariance Matrix Estimation"
+	"github/tjiangHIT/cuteSV": {
+	"id": "github/tjiangHIT/cuteSV",
+	"title": "github/tjiangHIT/cuteSV",
+	"url": " https://rseng.github.io/software/repository/github/tjiangHIT/cuteSV",
+	"content": "Long read based human genomic structural variation detection with cuteSV"
 	},
-	"github/oliverphilcox/HIPSTER": {
-	"id": "github/oliverphilcox/HIPSTER",
-	"title": "github/oliverphilcox/HIPSTER",
-	"url": " https://rseng.github.io/software/repository/github/oliverphilcox/HIPSTER",
-	"content": "HIPSTER: HIgh-k Power SpecTrum and bispectrum EstimatoR"
+	"github/emerge-erc/ALminer": {
+	"id": "github/emerge-erc/ALminer",
+	"title": "github/emerge-erc/ALminer",
+	"url": " https://rseng.github.io/software/repository/github/emerge-erc/ALminer",
+	"content": "ALminer: ALMA archive mining and visualization toolkit"
 	},
-	"github/oliverphilcox/HADES": {
-	"id": "github/oliverphilcox/HADES",
-	"title": "github/oliverphilcox/HADES",
-	"url": " https://rseng.github.io/software/repository/github/oliverphilcox/HADES",
-	"content": "A Hexadecapolar Analysis for Dust Estimation in Simulations (of CMB B-mode thermal dust emission)"
+	"github/DorianDepriester/mtex2Gmsh": {
+	"id": "github/DorianDepriester/mtex2Gmsh",
+	"title": "github/DorianDepriester/mtex2Gmsh",
+	"url": " https://rseng.github.io/software/repository/github/DorianDepriester/mtex2Gmsh",
+	"content": "Matlab toolbox for generating 2D meshes from EBSD data"
 	},
-	"github/oliverphilcox/OneLoopBispectrum": {
-	"id": "github/oliverphilcox/OneLoopBispectrum",
-	"title": "github/oliverphilcox/OneLoopBispectrum",
-	"url": " https://rseng.github.io/software/repository/github/oliverphilcox/OneLoopBispectrum",
-	"content": "Computation of the one-loop bispectrum of galaxies in redshift space"
+	"github/jellis18/PTMCMCSampler": {
+	"id": "github/jellis18/PTMCMCSampler",
+	"title": "github/jellis18/PTMCMCSampler",
+	"url": " https://rseng.github.io/software/repository/github/jellis18/PTMCMCSampler",
+	"content": "Parallel tempering MCMC sampler package written in Python"
 	},
-	"github/oliverphilcox/Keplers-Goat-Herd": {
-	"id": "github/oliverphilcox/Keplers-Goat-Herd",
-	"title": "github/oliverphilcox/Keplers-Goat-Herd",
-	"url": " https://rseng.github.io/software/repository/github/oliverphilcox/Keplers-Goat-Herd",
-	"content": "Solving Kepler&#39;s equation via contour integration, implemented in C++"
+	"github/fannyhb/fargene": {
+	"id": "github/fannyhb/fargene",
+	"title": "github/fannyhb/fargene",
+	"url": " https://rseng.github.io/software/repository/github/fannyhb/fargene",
+	"content": "None"
 	},
-	"github/oliverphilcox/PolyBin": {
-	"id": "github/oliverphilcox/PolyBin",
-	"title": "github/oliverphilcox/PolyBin",
-	"url": " https://rseng.github.io/software/repository/github/oliverphilcox/PolyBin",
-	"content": "Binned polyspectrum estimation on the full sky, optionally polarized and mask-deconvolved"
+	"github/marcelauliano/MitoHiFi": {
+	"id": "github/marcelauliano/MitoHiFi",
+	"title": "github/marcelauliano/MitoHiFi",
+	"url": " https://rseng.github.io/software/repository/github/marcelauliano/MitoHiFi",
+	"content": "Find, circularise and annotate mitogenome from PacBio assemblies"
 	},
-	"github/johnveitch/cpnest": {
-	"id": "github/johnveitch/cpnest",
-	"title": "github/johnveitch/cpnest",
-	"url": " https://rseng.github.io/software/repository/github/johnveitch/cpnest",
-	"content": "Parallel nested sampling"
+	"github/johnh2o2/cuvarbase": {
+	"id": "github/johnh2o2/cuvarbase",
+	"title": "github/johnh2o2/cuvarbase",
+	"url": " https://rseng.github.io/software/repository/github/johnh2o2/cuvarbase",
+	"content": "Python library for fast time-series analysis on CUDA GPUs"
 	},
-	"github/lmfit/lmfit-py": {
-	"id": "github/lmfit/lmfit-py",
-	"title": "github/lmfit/lmfit-py",
-	"url": " https://rseng.github.io/software/repository/github/lmfit/lmfit-py",
-	"content": "Non-Linear Least Squares Minimization, with flexible Parameter settings, based on scipy.optimize, and with many additional classes and methods for curve fitting. "
+	"github/pezmaster31/bamtools": {
+	"id": "github/pezmaster31/bamtools",
+	"title": "github/pezmaster31/bamtools",
+	"url": " https://rseng.github.io/software/repository/github/pezmaster31/bamtools",
+	"content": "C++ API &amp; command-line toolkit for working with BAM data"
 	},
-	"github/KTH-Nek5000/UQit": {
-	"id": "github/KTH-Nek5000/UQit",
-	"title": "github/KTH-Nek5000/UQit",
-	"url": " https://rseng.github.io/software/repository/github/KTH-Nek5000/UQit",
-	"content": "None"
+	"github/quantum-exeter/SpiDy.jl": {
+	"id": "github/quantum-exeter/SpiDy.jl",
+	"title": "github/quantum-exeter/SpiDy.jl",
+	"url": " https://rseng.github.io/software/repository/github/quantum-exeter/SpiDy.jl",
+	"content": ":spider: Non-Markovian stochastic SPIn (and harmonic oscillator) DYnamics. "
 	},
-	"github/pymc-devs/pymc3": {
-	"id": "github/pymc-devs/pymc3",
-	"title": "github/pymc-devs/pymc3",
-	"url": " https://rseng.github.io/software/repository/github/pymc-devs/pymc3",
-	"content": "Probabilistic Programming in Python: Bayesian Modeling and Probabilistic Machine Learning with Theano"
+	"github/travisseymour/EPICpy": {
+	"id": "github/travisseymour/EPICpy",
+	"title": "github/travisseymour/EPICpy",
+	"url": " https://rseng.github.io/software/repository/github/travisseymour/EPICpy",
+	"content": "Cross Platform Python Interface for EPIC modeling using C++ EPIClib backend"
+	},
+	"github/neuralgraphs/diman": {
+	"id": "github/neuralgraphs/diman",
+	"title": "github/neuralgraphs/diman",
+	"url": " https://rseng.github.io/software/repository/github/neuralgraphs/diman",
+	"content": "A Clojure library for applying dimensional analysis."
 	},
-	"github/AlexanderJuestel/pyheatdemand": {
-	"id": "github/AlexanderJuestel/pyheatdemand",
-	"title": "github/AlexanderJuestel/pyheatdemand",
-	"url": " https://rseng.github.io/software/repository/github/AlexanderJuestel/pyheatdemand",
-	"content": "Processing Tool for Heat Demand Data"
+	"github/lastz/lastz": {
+	"id": "github/lastz/lastz",
+	"title": "github/lastz/lastz",
+	"url": " https://rseng.github.io/software/repository/github/lastz/lastz",
+	"content": "Program for aligning DNA sequences, a pairwise aligner."
 	},
-	"github/bmorris3/fleck": {
-	"id": "github/bmorris3/fleck",
-	"title": "github/bmorris3/fleck",
-	"url": " https://rseng.github.io/software/repository/github/bmorris3/fleck",
-	"content": "Fast approximate light curves for starspot rotational modulation"
+	"github/exosports/BART": {
+	"id": "github/exosports/BART",
+	"title": "github/exosports/BART",
+	"url": " https://rseng.github.io/software/repository/github/exosports/BART",
+	"content": "Bayesian Atmospheric Radiative Transfer fitting code"
 	},
-	"github/bmorris3/aesop": {
-	"id": "github/bmorris3/aesop",
-	"title": "github/bmorris3/aesop",
-	"url": " https://rseng.github.io/software/repository/github/bmorris3/aesop",
-	"content": "ARC Echelle Spectroscopic Observation Pipeline (aesop)"
+	"github/exosports/transit": {
+	"id": "github/exosports/transit",
+	"title": "github/exosports/transit",
+	"url": " https://rseng.github.io/software/repository/github/exosports/transit",
+	"content": "Radiative-transfer code for planetary atmospheres"
 	},
-	"github/kerkelae/disimpy": {
-	"id": "github/kerkelae/disimpy",
-	"title": "github/kerkelae/disimpy",
-	"url": " https://rseng.github.io/software/repository/github/kerkelae/disimpy",
-	"content": "Massively parallelized Monte Carlo diffusion MRI simulator written in Python."
+	"github/exosports/homer": {
+	"id": "github/exosports/homer",
+	"title": "github/exosports/homer",
+	"url": " https://rseng.github.io/software/repository/github/exosports/homer",
+	"content": "Helper Of My Eternal Retrievals"
 	},
-	"github/cistib/origami": {
-	"id": "github/cistib/origami",
-	"title": "github/cistib/origami",
-	"url": " https://rseng.github.io/software/repository/github/cistib/origami",
-	"content": "MATLAB-based image analysis pipeline for extracting single-cell direction-variant shape features from fluorescence images of folding epithelial sheets."
+	"github/exosports/MARGE": {
+	"id": "github/exosports/MARGE",
+	"title": "github/exosports/MARGE",
+	"url": " https://rseng.github.io/software/repository/github/exosports/MARGE",
+	"content": "Machine learning Algorithm for Radiative transfer of Generated Exoplanets"
 	},
-	"github/BackofenLab/StoatyDive": {
-	"id": "github/BackofenLab/StoatyDive",
-	"title": "github/BackofenLab/StoatyDive",
-	"url": " https://rseng.github.io/software/repository/github/BackofenLab/StoatyDive",
+	"github/BioGenies/AMPBenchmark": {
+	"id": "github/BioGenies/AMPBenchmark",
+	"title": "github/BioGenies/AMPBenchmark",
+	"url": " https://rseng.github.io/software/repository/github/BioGenies/AMPBenchmark",
 	"content": "None"
 	},
-	"github/BackofenLab/IntaRNA": {
-	"id": "github/BackofenLab/IntaRNA",
-	"title": "github/BackofenLab/IntaRNA",
-	"url": " https://rseng.github.io/software/repository/github/BackofenLab/IntaRNA",
-	"content": "Efficient target prediction incorporating accessibility of interaction sites"
+	"github/gvilitechltd/LibSWIFFT": {
+	"id": "github/gvilitechltd/LibSWIFFT",
+	"title": "github/gvilitechltd/LibSWIFFT",
+	"url": " https://rseng.github.io/software/repository/github/gvilitechltd/LibSWIFFT",
+	"content": "LibSWIFFT - A fast C/C++ library for the SWIFFT secure homomorphic hash function"
 	},
-	"github/BackofenLab/Peakhood": {
-	"id": "github/BackofenLab/Peakhood",
-	"title": "github/BackofenLab/Peakhood",
-	"url": " https://rseng.github.io/software/repository/github/BackofenLab/Peakhood",
-	"content": "Individual site context extraction for CLIP-Seq peak regions"
+	"github/Sydney-Informatics-Hub/geodata-harvester": {
+	"id": "github/Sydney-Informatics-Hub/geodata-harvester",
+	"title": "github/Sydney-Informatics-Hub/geodata-harvester",
+	"url": " https://rseng.github.io/software/repository/github/Sydney-Informatics-Hub/geodata-harvester",
+	"content": "Jumpstart your geospatial analysis with a ready-made set of spatial-temporal aligned raster maps and data frames"
 	},
-	"github/klebgenomics/Kleborate": {
-	"id": "github/klebgenomics/Kleborate",
-	"title": "github/klebgenomics/Kleborate",
-	"url": " https://rseng.github.io/software/repository/github/klebgenomics/Kleborate",
-	"content": "Kleborate: a tool for typing and screening pathogen genome assemblies"
+	"github/Sydney-Informatics-Hub/OmixLitMiner": {
+	"id": "github/Sydney-Informatics-Hub/OmixLitMiner",
+	"title": "github/Sydney-Informatics-Hub/OmixLitMiner",
+	"url": " https://rseng.github.io/software/repository/github/Sydney-Informatics-Hub/OmixLitMiner",
+	"content": "A bioinformatics tool for prioritising biological leads from omics data using literature mining."
 	},
-	"github/StephenJHardy/SL1M": {
-	"id": "github/StephenJHardy/SL1M",
-	"title": "github/StephenJHardy/SL1M",
-	"url": " https://rseng.github.io/software/repository/github/StephenJHardy/SL1M",
-	"content": "Radio Synthesis Deconvolution using L1 Minimisation"
+	"github/epi2me-labs/mapula": {
+	"id": "github/epi2me-labs/mapula",
+	"title": "github/epi2me-labs/mapula",
+	"url": " https://rseng.github.io/software/repository/github/epi2me-labs/mapula",
+	"content": "Generate mapping stats at your chosen level of aggregation"
 	},
-	"github/RBrearton/islatu": {
-	"id": "github/RBrearton/islatu",
-	"title": "github/RBrearton/islatu",
-	"url": " https://rseng.github.io/software/repository/github/RBrearton/islatu",
-	"content": "X-ray reflectometry reduction from Diamond Light Source"
+	"github/ucberkeleyseti/turbo_seti": {
+	"id": "github/ucberkeleyseti/turbo_seti",
+	"title": "github/ucberkeleyseti/turbo_seti",
+	"url": " https://rseng.github.io/software/repository/github/ucberkeleyseti/turbo_seti",
+	"content": "turboSETI  -- python based SETI search algorithm."
 	},
-	"github/li-yangyang/lotus": {
-	"id": "github/li-yangyang/lotus",
-	"title": "github/li-yangyang/lotus",
-	"url": " https://rseng.github.io/software/repository/github/li-yangyang/lotus",
-	"content": "Fast tool for 1D Non-LTE stellar parameter determination via Equivalent Width method"
+	"github/ucberkeleyseti/blimpy": {
+	"id": "github/ucberkeleyseti/blimpy",
+	"title": "github/ucberkeleyseti/blimpy",
+	"url": " https://rseng.github.io/software/repository/github/ucberkeleyseti/blimpy",
+	"content": "Breakthrough Listen I/O Methods for Python"
 	},
-	"github/keurfonluu/toughio": {
-	"id": "github/keurfonluu/toughio",
-	"title": "github/keurfonluu/toughio",
-	"url": " https://rseng.github.io/software/repository/github/keurfonluu/toughio",
-	"content": "Pre- and post-processing Python library for TOUGH"
+	"github/mmore500/hstrat": {
+	"id": "github/mmore500/hstrat",
+	"title": "github/mmore500/hstrat",
+	"url": " https://rseng.github.io/software/repository/github/mmore500/hstrat",
+	"content": "hstrat enables phylogenetic inference on distributed digital evolution populations"
 	},
-	"github/pynucastro/pynucastro": {
-	"id": "github/pynucastro/pynucastro",
-	"title": "github/pynucastro/pynucastro",
-	"url": " https://rseng.github.io/software/repository/github/pynucastro/pynucastro",
-	"content": "python interfaces to the nuclear reaction rate databases"
+	"github/adrientaudiere/MiscMetabar": {
+	"id": "github/adrientaudiere/MiscMetabar",
+	"title": "github/adrientaudiere/MiscMetabar",
+	"url": " https://rseng.github.io/software/repository/github/adrientaudiere/MiscMetabar",
+	"content": "R package MiscMetabar: Miscellaneous functions for metabarcoding analysis"
 	},
-	"github/IMS-MAXIMS/openMAXIMS": {
-	"id": "github/IMS-MAXIMS/openMAXIMS",
-	"title": "github/IMS-MAXIMS/openMAXIMS",
-	"url": " https://rseng.github.io/software/repository/github/IMS-MAXIMS/openMAXIMS",
-	"content": "Home of the openMAXIMS PAS and EPR"
+	"github/miracum/ahd2fhir": {
+	"id": "github/miracum/ahd2fhir",
+	"title": "github/miracum/ahd2fhir",
+	"url": " https://rseng.github.io/software/repository/github/miracum/ahd2fhir",
+	"content": "A REST service for mapping text analysis results from Averbis Health Discovery to FHIR resources."
 	},
-	"github/chainsawriot/oolong": {
-	"id": "github/chainsawriot/oolong",
-	"title": "github/chainsawriot/oolong",
-	"url": " https://rseng.github.io/software/repository/github/chainsawriot/oolong",
-	"content": "oolong 🍵 : create and administrate validation tests for typical automated content analysis tools."
+	"github/AstarVienna/irdb": {
+	"id": "github/AstarVienna/irdb",
+	"title": "github/AstarVienna/irdb",
+	"url": " https://rseng.github.io/software/repository/github/AstarVienna/irdb",
+	"content": "A database containing instrument data for infrared telescopes"
 	},
-	"github/chainsawriot/sweater": {
-	"id": "github/chainsawriot/sweater",
-	"title": "github/chainsawriot/sweater",
-	"url": " https://rseng.github.io/software/repository/github/chainsawriot/sweater",
-	"content": "👚 Speedy Word Embedding Association Test &amp; Extras using R"
+	"github/AstarVienna/AnisoCADO": {
+	"id": "github/AstarVienna/AnisoCADO",
+	"title": "github/AstarVienna/AnisoCADO",
+	"url": " https://rseng.github.io/software/repository/github/AstarVienna/AnisoCADO",
+	"content": "A package to generate off-axis PSFs for the SCAO mode for MICADO at the ELT"
 	},
-	"github/kathrinnp/DarkRayNet": {
-	"id": "github/kathrinnp/DarkRayNet",
-	"title": "github/kathrinnp/DarkRayNet",
-	"url": " https://rseng.github.io/software/repository/github/kathrinnp/DarkRayNet",
-	"content": "Quick cosmic ray antiproton simulations for dark matter annihilation models using neural networks"
+	"github/AstarVienna/skycalc_ipy": {
+	"id": "github/AstarVienna/skycalc_ipy",
+	"title": "github/AstarVienna/skycalc_ipy",
+	"url": " https://rseng.github.io/software/repository/github/AstarVienna/skycalc_ipy",
+	"content": "iPython version of skycalc_cli"
 	},
-	"github/tmux/tmux": {
-	"id": "github/tmux/tmux",
-	"title": "github/tmux/tmux",
-	"url": " https://rseng.github.io/software/repository/github/tmux/tmux",
-	"content": "tmux source code"
+	"github/AstarVienna/Pyckles": {
+	"id": "github/AstarVienna/Pyckles",
+	"title": "github/AstarVienna/Pyckles",
+	"url": " https://rseng.github.io/software/repository/github/AstarVienna/Pyckles",
+	"content": "A super lightweight interface to load spectra from the Pickles 1998 catalogue"
 	},
-	"github/Weeks-UNC/RingMapper": {
-	"id": "github/Weeks-UNC/RingMapper",
-	"title": "github/Weeks-UNC/RingMapper",
-	"url": " https://rseng.github.io/software/repository/github/Weeks-UNC/RingMapper",
-	"content": "Code for performing RING-MaP and PAIR-MaP analysis"
+	"github/AstarVienna/ScopeSim_Templates": {
+	"id": "github/AstarVienna/ScopeSim_Templates",
+	"title": "github/AstarVienna/ScopeSim_Templates",
+	"url": " https://rseng.github.io/software/repository/github/AstarVienna/ScopeSim_Templates",
+	"content": "None"
 	},
-	"github/MetazoaPhylogenomicsLab/FANTASIA": {
-	"id": "github/MetazoaPhylogenomicsLab/FANTASIA",
-	"title": "github/MetazoaPhylogenomicsLab/FANTASIA",
-	"url": " https://rseng.github.io/software/repository/github/MetazoaPhylogenomicsLab/FANTASIA",
+	"github/tinglabs/scAIDE": {
+	"id": "github/tinglabs/scAIDE",
+	"title": "github/tinglabs/scAIDE",
+	"url": " https://rseng.github.io/software/repository/github/tinglabs/scAIDE",
 	"content": "None"
 	},
-	"github/masadcv/FastGeodis": {
-	"id": "github/masadcv/FastGeodis",
-	"title": "github/masadcv/FastGeodis",
-	"url": " https://rseng.github.io/software/repository/github/masadcv/FastGeodis",
-	"content": "Fast Implementation of Generalised Geodesic Distance Transform for CPU (OpenMP) and GPU (CUDA)"
+	"github/csdms/bmi": {
+	"id": "github/csdms/bmi",
+	"title": "github/csdms/bmi",
+	"url": " https://rseng.github.io/software/repository/github/csdms/bmi",
+	"content": "The Basic Model Interface"
 	},
-	"github/kkrismer/scansite4": {
-	"id": "github/kkrismer/scansite4",
-	"title": "github/kkrismer/scansite4",
-	"url": " https://rseng.github.io/software/repository/github/kkrismer/scansite4",
-	"content": "Scansite searches for motifs within proteins that are likely to be phosphorylated by specific protein kinases or bind to domains such as SH2 domains, 14-3-3 domains or PDZ domains."
+	"github/guynir42/radon": {
+	"id": "github/guynir42/radon",
+	"title": "github/guynir42/radon",
+	"url": " https://rseng.github.io/software/repository/github/guynir42/radon",
+	"content": "Streak detection using the Fast Radon Transform"
 	},
-	"github/solerjuan/magnetar": {
-	"id": "github/solerjuan/magnetar",
-	"title": "github/solerjuan/magnetar",
-	"url": " https://rseng.github.io/software/repository/github/solerjuan/magnetar",
-	"content": "None"
+	"github/constantAmateur/SoupX": {
+	"id": "github/constantAmateur/SoupX",
+	"title": "github/constantAmateur/SoupX",
+	"url": " https://rseng.github.io/software/repository/github/constantAmateur/SoupX",
+	"content": "R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data"
 	},
-	"github/solerjuan/astroHOG": {
-	"id": "github/solerjuan/astroHOG",
-	"title": "github/solerjuan/astroHOG",
-	"url": " https://rseng.github.io/software/repository/github/solerjuan/astroHOG",
-	"content": "Set of tools for the analysis correlations using the Histograms of Oriented Gradients"
+	"github/ChemaPalencia/M_SMiLe": {
+	"id": "github/ChemaPalencia/M_SMiLe",
+	"title": "github/ChemaPalencia/M_SMiLe",
+	"url": " https://rseng.github.io/software/repository/github/ChemaPalencia/M_SMiLe",
+	"content": "Code to provide approximate magnification probability distributions under microlensing by compact objects such as stars or PBHs of strongly lensed stars."
 	},
-	"github/kuanrongchan/COVID19-severity": {
-	"id": "github/kuanrongchan/COVID19-severity",
-	"title": "github/kuanrongchan/COVID19-severity",
-	"url": " https://rseng.github.io/software/repository/github/kuanrongchan/COVID19-severity",
+	"github/baiwenjia/ukbb_cardiac": {
+	"id": "github/baiwenjia/ukbb_cardiac",
+	"title": "github/baiwenjia/ukbb_cardiac",
+	"url": " https://rseng.github.io/software/repository/github/baiwenjia/ukbb_cardiac",
+	"content": "Some code for processing and analysing UK Biobank cardiac MR images."
+	},
+	"github/dcorre/otrain": {
+	"id": "github/dcorre/otrain",
+	"title": "github/dcorre/otrain",
+	"url": " https://rseng.github.io/software/repository/github/dcorre/otrain",
 	"content": "None"
 	},
-	"github/bids-standard/bids-validator": {
-	"id": "github/bids-standard/bids-validator",
-	"title": "github/bids-standard/bids-validator",
-	"url": " https://rseng.github.io/software/repository/github/bids-standard/bids-validator",
-	"content": "Validator for the Brain Imaging Data Structure"
+	"github/AOtools/aotools": {
+	"id": "github/AOtools/aotools",
+	"title": "github/AOtools/aotools",
+	"url": " https://rseng.github.io/software/repository/github/AOtools/aotools",
+	"content": "A useful set of tools for Adaptive Optics in Python"
 	},
-	"github/Nextomics/nextsv": {
-	"id": "github/Nextomics/nextsv",
-	"title": "github/Nextomics/nextsv",
-	"url": " https://rseng.github.io/software/repository/github/Nextomics/nextsv",
-	"content": "automated structural variation detection for long-read sequencing"
+	"github/dzerbino/velvet": {
+	"id": "github/dzerbino/velvet",
+	"title": "github/dzerbino/velvet",
+	"url": " https://rseng.github.io/software/repository/github/dzerbino/velvet",
+	"content": "Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18: 821-829"
 	},
-	"github/andreaminio/haplosync": {
-	"id": "github/andreaminio/haplosync",
-	"title": "github/andreaminio/haplosync",
-	"url": " https://rseng.github.io/software/repository/github/andreaminio/haplosync",
-	"content": "Tools for haplotype-wise reconstruction of pseudomolecules"
+	"github/ageller/firefly": {
+	"id": "github/ageller/firefly",
+	"title": "github/ageller/firefly",
+	"url": " https://rseng.github.io/software/repository/github/ageller/firefly",
+	"content": "A WebGL interactive particle viewer"
 	},
-	"github/ridgelab/rampAtlas": {
-	"id": "github/ridgelab/rampAtlas",
-	"title": "github/ridgelab/rampAtlas",
-	"url": " https://rseng.github.io/software/repository/github/ridgelab/rampAtlas",
-	"content": "Code used to retrieve, organize, and analyze data for the Ramp Atlas"
+	"github/PhilippJunk/homelette": {
+	"id": "github/PhilippJunk/homelette",
+	"title": "github/PhilippJunk/homelette",
+	"url": " https://rseng.github.io/software/repository/github/PhilippJunk/homelette",
+	"content": "A unified and modular interface to homology modelling software"
 	},
-	"github/ridgelab/ExtRampOnline": {
-	"id": "github/ridgelab/ExtRampOnline",
-	"title": "github/ridgelab/ExtRampOnline",
-	"url": " https://rseng.github.io/software/repository/github/ridgelab/ExtRampOnline",
-	"content": "None"
+	"github/benstahl92/deepSIP": {
+	"id": "github/benstahl92/deepSIP",
+	"title": "github/benstahl92/deepSIP",
+	"url": " https://rseng.github.io/software/repository/github/benstahl92/deepSIP",
+	"content": "Deep Learning of Supernova Ia Parameters"
 	},
-	"github/FitSNAP/FitSNAP": {
-	"id": "github/FitSNAP/FitSNAP",
-	"title": "github/FitSNAP/FitSNAP",
-	"url": " https://rseng.github.io/software/repository/github/FitSNAP/FitSNAP",
-	"content": "Software for generating SNAP machine-learning interatomic potentials"
+	"github/jpuritz/dDocent": {
+	"id": "github/jpuritz/dDocent",
+	"title": "github/jpuritz/dDocent",
+	"url": " https://rseng.github.io/software/repository/github/jpuritz/dDocent",
+	"content": "a bash pipeline for RAD sequencing"
 	},
-	"github/lyf222/alpconv": {
-	"id": "github/lyf222/alpconv",
-	"title": "github/lyf222/alpconv",
-	"url": " https://rseng.github.io/software/repository/github/lyf222/alpconv",
-	"content": "calculating alp-photon conversion"
+	"github/wangsiwei2010/FPMVS-CAG": {
+	"id": "github/wangsiwei2010/FPMVS-CAG",
+	"title": "github/wangsiwei2010/FPMVS-CAG",
+	"url": " https://rseng.github.io/software/repository/github/wangsiwei2010/FPMVS-CAG",
+	"content": "code of &#34;Fast Parameter-free Multi-view Subspace Clustering with Consensus Anchor Guidance &#34; published in IEEE TIP2022"
 	},
-	"github/CoolWorlds/ExoPriors": {
-	"id": "github/CoolWorlds/ExoPriors",
-	"title": "github/CoolWorlds/ExoPriors",
-	"url": " https://rseng.github.io/software/repository/github/CoolWorlds/ExoPriors",
-	"content": "Calculate log-likelihood penalties to account for observational bias in exoplanet detection."
+	"github/vprusso/toqito": {
+	"id": "github/vprusso/toqito",
+	"title": "github/vprusso/toqito",
+	"url": " https://rseng.github.io/software/repository/github/vprusso/toqito",
+	"content": "|toqito&gt; (Theory of Quantum Information Toolkit) in Python :snake:"
 	},
-	"github/CoolWorlds/exoinformatics": {
-	"id": "github/CoolWorlds/exoinformatics",
-	"title": "github/CoolWorlds/exoinformatics",
-	"url": " https://rseng.github.io/software/repository/github/CoolWorlds/exoinformatics",
+	"github/kokron/skyLine": {
+	"id": "github/kokron/skyLine",
+	"title": "github/kokron/skyLine",
+	"url": " https://rseng.github.io/software/repository/github/kokron/skyLine",
 	"content": "None"
 	},
-	"github/zclaytor/kiauhoku": {
-	"id": "github/zclaytor/kiauhoku",
-	"title": "github/zclaytor/kiauhoku",
-	"url": " https://rseng.github.io/software/repository/github/zclaytor/kiauhoku",
-	"content": "Python utilities for stellar model grid interpolation"
+	"github/kokron/anzu": {
+	"id": "github/kokron/anzu",
+	"title": "github/kokron/anzu",
+	"url": " https://rseng.github.io/software/repository/github/kokron/anzu",
+	"content": "Measurements and emulation of Lagrangian bias models for clustering and lensing cross-correlations."
 	},
-	"github/zclaytor/butterpy": {
-	"id": "github/zclaytor/butterpy",
-	"title": "github/zclaytor/butterpy",
-	"url": " https://rseng.github.io/software/repository/github/zclaytor/butterpy",
-	"content": "Python simulations of stellar butterfly diagrams and rotational light curves"
+	"github/tomasplsek/CADET": {
+	"id": "github/tomasplsek/CADET",
+	"title": "github/tomasplsek/CADET",
+	"url": " https://rseng.github.io/software/repository/github/tomasplsek/CADET",
+	"content": "Machine learning pipeline trained for finding and size-estimating X-ray cavities from noisy Chandra images of early-type galaxies."
 	},
-	"github/GBLille/MassiveFold": {
-	"id": "github/GBLille/MassiveFold",
-	"title": "github/GBLille/MassiveFold",
-	"url": " https://rseng.github.io/software/repository/github/GBLille/MassiveFold",
+	"github/tschad/pycelp": {
+	"id": "github/tschad/pycelp",
+	"title": "github/tschad/pycelp",
+	"url": " https://rseng.github.io/software/repository/github/tschad/pycelp",
+	"content": "a Python package for Coronal Emission Line Polarization "
+	},
+	"github/facom/BHMcalc": {
+	"id": "github/facom/BHMcalc",
+	"title": "github/facom/BHMcalc",
+	"url": " https://rseng.github.io/software/repository/github/facom/BHMcalc",
+	"content": "Binary Habitability Mechanism - Calculator"
+	},
+	"github/facom/tidev": {
+	"id": "github/facom/tidev",
+	"title": "github/facom/tidev",
+	"url": " https://rseng.github.io/software/repository/github/facom/tidev",
 	"content": "None"
 	},
-	"github/hcdenbakker/sepia": {
-	"id": "github/hcdenbakker/sepia",
-	"title": "github/hcdenbakker/sepia",
-	"url": " https://rseng.github.io/software/repository/github/hcdenbakker/sepia",
-	"content": "taxonomic classifier based on the kraken2 algorithms and more"
+	"github/facom/exorings": {
+	"id": "github/facom/exorings",
+	"title": "github/facom/exorings",
+	"url": " https://rseng.github.io/software/repository/github/facom/exorings",
+	"content": "Code Repository for Exoring Transit Properties"
 	},
-	"github/hcdenbakker/SalmID": {
-	"id": "github/hcdenbakker/SalmID",
-	"title": "github/hcdenbakker/SalmID",
-	"url": " https://rseng.github.io/software/repository/github/hcdenbakker/SalmID",
-	"content": "Rapid confirmation of Salmonella spp. and subspp. from sequence data"
+	"github/tiberioap/grav_waldo": {
+	"id": "github/tiberioap/grav_waldo",
+	"title": "github/tiberioap/grav_waldo",
+	"url": " https://rseng.github.io/software/repository/github/tiberioap/grav_waldo",
+	"content": "Waveform anomaly detector"
 	},
-	"github/dzerbino/velvet": {
-	"id": "github/dzerbino/velvet",
-	"title": "github/dzerbino/velvet",
-	"url": " https://rseng.github.io/software/repository/github/dzerbino/velvet",
-	"content": "Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18: 821-829"
+	"github/vimc/orderly": {
+	"id": "github/vimc/orderly",
+	"title": "github/vimc/orderly",
+	"url": " https://rseng.github.io/software/repository/github/vimc/orderly",
+	"content": ":hospital::ambulance: Lightweight Reproducible Reporting for R"
 	},
-	"github/giuspugl/picasso": {
-	"id": "github/giuspugl/picasso",
-	"title": "github/giuspugl/picasso",
-	"url": " https://rseng.github.io/software/repository/github/giuspugl/picasso",
-	"content": "Inpainter for point-sources for Synchrotron and Dust polarization "
+	"github/vimc/dettl": {
+	"id": "github/vimc/dettl",
+	"title": "github/vimc/dettl",
+	"url": " https://rseng.github.io/software/repository/github/vimc/dettl",
+	"content": ":bar_chart::shower: Data extract, transform, test and load"
 	},
-	"github/giuspugl/fgcluster": {
-	"id": "github/giuspugl/fgcluster",
-	"title": "github/giuspugl/fgcluster",
-	"url": " https://rseng.github.io/software/repository/github/giuspugl/fgcluster",
-	"content": "None"
+	"github/vimc/vaultr": {
+	"id": "github/vimc/vaultr",
+	"title": "github/vimc/vaultr",
+	"url": " https://rseng.github.io/software/repository/github/vimc/vaultr",
+	"content": ":lock: API client for Hashicorp&#39;s vault (https://www.vaultproject.io/)"
 	},
-	"github/giuspugl/MCMole3D": {
-	"id": "github/giuspugl/MCMole3D",
-	"title": "github/giuspugl/MCMole3D",
-	"url": " https://rseng.github.io/software/repository/github/giuspugl/MCMole3D",
-	"content": "MonteCarlo Molecular Line Emission 3d.Statistical Model for Galactic Molecular Clouds. For documentation please visit"
+	"github/illumina/pyflow": {
+	"id": "github/illumina/pyflow",
+	"title": "github/illumina/pyflow",
+	"url": " https://rseng.github.io/software/repository/github/illumina/pyflow",
+	"content": "A lightweight parallel task engine"
 	},
-	"github/scikit-learn/scikit-learn": {
-	"id": "github/scikit-learn/scikit-learn",
-	"title": "github/scikit-learn/scikit-learn",
-	"url": " https://rseng.github.io/software/repository/github/scikit-learn/scikit-learn",
-	"content": "scikit-learn: machine learning in Python"
+	"github/brainets/frites": {
+	"id": "github/brainets/frites",
+	"title": "github/brainets/frites",
+	"url": " https://rseng.github.io/software/repository/github/brainets/frites",
+	"content": "Framework for Information Theoretical analysis of Electrophysiological data and Statistics"
 	},
-	"github/robbievanleeuwen/section-properties": {
-	"id": "github/robbievanleeuwen/section-properties",
-	"title": "github/robbievanleeuwen/section-properties",
-	"url": " https://rseng.github.io/software/repository/github/robbievanleeuwen/section-properties",
-	"content": "Analysis of an arbitrary cross-section in python using the finite element method."
+	"github/sidiwang/snSMART": {
+	"id": "github/sidiwang/snSMART",
+	"title": "github/sidiwang/snSMART",
+	"url": " https://rseng.github.io/software/repository/github/sidiwang/snSMART",
+	"content": "small n sequential multiple assignment randomized trial (snSMART)"
 	},
-	"github/dylancromer/maszcal": {
-	"id": "github/dylancromer/maszcal",
-	"title": "github/dylancromer/maszcal",
-	"url": " https://rseng.github.io/software/repository/github/dylancromer/maszcal",
-	"content": "Mass calibrations for thermal-SZ clusters"
+	"github/martin3141/spant": {
+	"id": "github/martin3141/spant",
+	"title": "github/martin3141/spant",
+	"url": " https://rseng.github.io/software/repository/github/martin3141/spant",
+	"content": "Tools for reading, visualising and processing Magnetic Resonance Spectroscopy data"
 	},
-	"github/dylancromer/ostrich": {
-	"id": "github/dylancromer/ostrich",
-	"title": "github/dylancromer/ostrich",
-	"url": " https://rseng.github.io/software/repository/github/dylancromer/ostrich",
+	"github/astrosmili/smili": {
+	"id": "github/astrosmili/smili",
+	"title": "github/astrosmili/smili",
+	"url": " https://rseng.github.io/software/repository/github/astrosmili/smili",
+	"content": "SMILI: Sparse Modeling Imaging Library for Interferometry"
+	},
+	"github/lucaborsato/trades": {
+	"id": "github/lucaborsato/trades",
+	"title": "github/lucaborsato/trades",
+	"url": " https://rseng.github.io/software/repository/github/lucaborsato/trades",
+	"content": "Fortran90 code for the orbital simulation of exoplanetary system with simultaneous fit of Transit Times and Radial Velocities. "
+	},
+	"github/erikbern/ann-benchmarks": {
+	"id": "github/erikbern/ann-benchmarks",
+	"title": "github/erikbern/ann-benchmarks",
+	"url": " https://rseng.github.io/software/repository/github/erikbern/ann-benchmarks",
+	"content": "Benchmarks of approximate nearest neighbor libraries in Python"
+	},
+	"github/Bgi-LUSH/GPMeta": {
+	"id": "github/Bgi-LUSH/GPMeta",
+	"title": "github/Bgi-LUSH/GPMeta",
+	"url": " https://rseng.github.io/software/repository/github/Bgi-LUSH/GPMeta",
+	"content": "A GPU-accelerated method for ultrarapid pathogen identification from metagenomic sequences."
+	},
+	"github/netrias/rnassist": {
+	"id": "github/netrias/rnassist",
+	"title": "github/netrias/rnassist",
+	"url": " https://rseng.github.io/software/repository/github/netrias/rnassist",
 	"content": "None"
 	},
-	"github/uwssg/APS": {
-	"id": "github/uwssg/APS",
-	"title": "github/uwssg/APS",
-	"url": " https://rseng.github.io/software/repository/github/uwssg/APS",
-	"content": "an alternative to Markov chain Monte Carlo"
+	"github/micbia/SubgridClumping": {
+	"id": "github/micbia/SubgridClumping",
+	"title": "github/micbia/SubgridClumping",
+	"url": " https://rseng.github.io/software/repository/github/micbia/SubgridClumping",
+	"content": "None"
 	},
-	"github/rajeshrinet/pystokes": {
-	"id": "github/rajeshrinet/pystokes",
-	"title": "github/rajeshrinet/pystokes",
-	"url": " https://rseng.github.io/software/repository/github/rajeshrinet/pystokes",
-	"content": "PyStokes: phoresis and Stokesian hydrodynamics in Python: https://github.com/rajeshrinet/pystokes"
+	"github/H-E-L-P/XID_plus": {
+	"id": "github/H-E-L-P/XID_plus",
+	"title": "github/H-E-L-P/XID_plus",
+	"url": " https://rseng.github.io/software/repository/github/H-E-L-P/XID_plus",
+	"content": "Next generation XID development"
 	},
-	"github/lbr-stack/lbr_stack_doc": {
-	"id": "github/lbr-stack/lbr_stack_doc",
-	"title": "github/lbr-stack/lbr_stack_doc",
-	"url": " https://rseng.github.io/software/repository/github/lbr-stack/lbr_stack_doc",
-	"content": "Documentation for the LBR-Stack"
+	"github/benallard/galileo": {
+	"id": "github/benallard/galileo",
+	"title": "github/benallard/galileo",
+	"url": " https://rseng.github.io/software/repository/github/benallard/galileo",
+	"content": "Utility to securely synchronize a Fitbit device with the Fitbit web service"
 	},
-	"github/RavenGan/GR2D2": {
-	"id": "github/RavenGan/GR2D2",
-	"title": "github/RavenGan/GR2D2",
-	"url": " https://rseng.github.io/software/repository/github/RavenGan/GR2D2",
-	"content": "Take Monte Carlo samples from the posterior distribution based on the graphical R2D2 prior, to estimate the precision matrix for multivariate Gaussian data"
+	"github/jeremiah-corrado/fem_2d": {
+	"id": "github/jeremiah-corrado/fem_2d",
+	"title": "github/jeremiah-corrado/fem_2d",
+	"url": " https://rseng.github.io/software/repository/github/jeremiah-corrado/fem_2d",
+	"content": "A rust library for 2D Finite Element Method computations"
 	},
-	"github/JuliaMatrices/BlockBandedMatrices.jl": {
-	"id": "github/JuliaMatrices/BlockBandedMatrices.jl",
-	"title": "github/JuliaMatrices/BlockBandedMatrices.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaMatrices/BlockBandedMatrices.jl",
-	"content": "A Julia package for representing block-banded matrices and banded-block-banded matrices"
+	"github/xiaochuanle/MECAT2": {
+	"id": "github/xiaochuanle/MECAT2",
+	"title": "github/xiaochuanle/MECAT2",
+	"url": " https://rseng.github.io/software/repository/github/xiaochuanle/MECAT2",
+	"content": "ultra-fast and accurate de novo assembly tools for SMRT reads"
 	},
-	"github/JuliaMatrices/BandedMatrices.jl": {
-	"id": "github/JuliaMatrices/BandedMatrices.jl",
-	"title": "github/JuliaMatrices/BandedMatrices.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaMatrices/BandedMatrices.jl",
-	"content": "A Julia package for representing banded matrices"
+	"github/fast-data-transfer/fdt": {
+	"id": "github/fast-data-transfer/fdt",
+	"title": "github/fast-data-transfer/fdt",
+	"url": " https://rseng.github.io/software/repository/github/fast-data-transfer/fdt",
+	"content": "FDT is an Application for Efficient Data Transfers which is capable of reading and writing at disk speed over wide area networks (with standard TCP). It is written in Java, runs an all major platforms and it is easy to use.  FDT is based on an asynchronous, flexible multithreaded system and is using the capabilities of the Java NIO libraries."
 	},
-	"github/JuliaMatrices/LazyBandedMatrices.jl": {
-	"id": "github/JuliaMatrices/LazyBandedMatrices.jl",
-	"title": "github/JuliaMatrices/LazyBandedMatrices.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaMatrices/LazyBandedMatrices.jl",
-	"content": "A Julia package for lazy banded matrices"
+	"github/martinjameswhite/directsht": {
+	"id": "github/martinjameswhite/directsht",
+	"title": "github/martinjameswhite/directsht",
+	"url": " https://rseng.github.io/software/repository/github/martinjameswhite/directsht",
+	"content": "Direct spherical harmonic transform code for point sets on the sphere."
 	},
-	"github/wmglab-duke/ascent": {
-	"id": "github/wmglab-duke/ascent",
-	"title": "github/wmglab-duke/ascent",
-	"url": " https://rseng.github.io/software/repository/github/wmglab-duke/ascent",
-	"content": "ASCENT (Automated Simulations to Characterize Electrical Nerve Thresholds): A pipeline for sample-specific computational modeling of electrical stimulation of peripheral nerves"
+	"github/martinjameswhite/ZeldovichRecon": {
+	"id": "github/martinjameswhite/ZeldovichRecon",
+	"title": "github/martinjameswhite/ZeldovichRecon",
+	"url": " https://rseng.github.io/software/repository/github/martinjameswhite/ZeldovichRecon",
+	"content": "Code to compute the post-reconstruction halo correlation function using the Zeldovich approximation."
 	},
-	"github/KALMUS-Color-Toolkit/KALMUS": {
-	"id": "github/KALMUS-Color-Toolkit/KALMUS",
-	"title": "github/KALMUS-Color-Toolkit/KALMUS",
-	"url": " https://rseng.github.io/software/repository/github/KALMUS-Color-Toolkit/KALMUS",
-	"content": "KALMUS Color Toolkit for color analysis and visualization in film studies."
+	"github/rdpstaff/AlignmentTools": {
+	"id": "github/rdpstaff/AlignmentTools",
+	"title": "github/rdpstaff/AlignmentTools",
+	"url": " https://rseng.github.io/software/repository/github/rdpstaff/AlignmentTools",
+	"content": "Tools for pairwise sequence comparison, distance calculation, and hidden markov model sequence scoring (using HMMER3 models).  Many RDP Projects require this package."
 	},
-	"github/actris-cloudnet/mwrpy": {
-	"id": "github/actris-cloudnet/mwrpy",
-	"title": "github/actris-cloudnet/mwrpy",
-	"url": " https://rseng.github.io/software/repository/github/actris-cloudnet/mwrpy",
-	"content": "Python package for Microwave Radiometer processing in ACTRIS "
+	"github/rdpstaff/TaxonomyTree": {
+	"id": "github/rdpstaff/TaxonomyTree",
+	"title": "github/rdpstaff/TaxonomyTree",
+	"url": " https://rseng.github.io/software/repository/github/rdpstaff/TaxonomyTree",
+	"content": "TaxonomyTree building and traversal utility classes."
 	},
-	"github/actris-cloudnet/cloudnetpy": {
-	"id": "github/actris-cloudnet/cloudnetpy",
-	"title": "github/actris-cloudnet/cloudnetpy",
-	"url": " https://rseng.github.io/software/repository/github/actris-cloudnet/cloudnetpy",
-	"content": "Python package for Cloudnet data processing "
+	"github/rdpstaff/classifier": {
+	"id": "github/rdpstaff/classifier",
+	"title": "github/rdpstaff/classifier",
+	"url": " https://rseng.github.io/software/repository/github/rdpstaff/classifier",
+	"content": "RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s"
 	},
-	"github/CarlosCoba/XookSuut-code": {
-	"id": "github/CarlosCoba/XookSuut-code",
-	"title": "github/CarlosCoba/XookSuut-code",
-	"url": " https://rseng.github.io/software/repository/github/CarlosCoba/XookSuut-code",
-	"content": "XookSuut is a python tool for modeling non-circular flows in galaxies with resolved velocity maps."
+	"github/rdpstaff/ReadSeq": {
+	"id": "github/rdpstaff/ReadSeq",
+	"title": "github/rdpstaff/ReadSeq",
+	"url": " https://rseng.github.io/software/repository/github/rdpstaff/ReadSeq",
+	"content": "Java based common sequence file format reader and sequence file manipulation.  Most RDP projects require this package."
 	},
-	"github/alicia-ziying-yang/conTEXT-explorer": {
-	"id": "github/alicia-ziying-yang/conTEXT-explorer",
-	"title": "github/alicia-ziying-yang/conTEXT-explorer",
-	"url": " https://rseng.github.io/software/repository/github/alicia-ziying-yang/conTEXT-explorer",
-	"content": "ConTEXT Explorer is an open Web-based system for exploring and visualizing concepts (combinations of occurring words and phrases) over time in the text documents."
+	"github/deaglanbartlett/symbolic_pofk": {
+	"id": "github/deaglanbartlett/symbolic_pofk",
+	"title": "github/deaglanbartlett/symbolic_pofk",
+	"url": " https://rseng.github.io/software/repository/github/deaglanbartlett/symbolic_pofk",
+	"content": "Precise symbolic emulators of the linear and nonlinear matter power spectrum"
 	},
-	"github/OSU-BMBL/IDAM": {
-	"id": "github/OSU-BMBL/IDAM",
-	"title": "github/OSU-BMBL/IDAM",
-	"url": " https://rseng.github.io/software/repository/github/OSU-BMBL/IDAM",
-	"content": "Infer disease-associated microbial biomarkers based on metagenomic and metatranscriptomic data"
+	"github/sinanozaydin/pide": {
+	"id": "github/sinanozaydin/pide",
+	"title": "github/sinanozaydin/pide",
+	"url": " https://rseng.github.io/software/repository/github/sinanozaydin/pide",
+	"content": "A python library for petrophysical calculations."
 	},
-	"github/QuantumPlasma/SFQEDtoolkit": {
-	"id": "github/QuantumPlasma/SFQEDtoolkit",
-	"title": "github/QuantumPlasma/SFQEDtoolkit",
-	"url": " https://rseng.github.io/software/repository/github/QuantumPlasma/SFQEDtoolkit",
-	"content": "None"
+	"github/dirmeier/surjectors": {
+	"id": "github/dirmeier/surjectors",
+	"title": "github/dirmeier/surjectors",
+	"url": " https://rseng.github.io/software/repository/github/dirmeier/surjectors",
+	"content": "Surjection layers for density estimation with normalizing flows"
 	},
-	"github/SotaYoshida/NuclearToolkit.jl": {
-	"id": "github/SotaYoshida/NuclearToolkit.jl",
-	"title": "github/SotaYoshida/NuclearToolkit.jl",
-	"url": " https://rseng.github.io/software/repository/github/SotaYoshida/NuclearToolkit.jl",
-	"content": "NuclearToolkit.jl: Julia package for nuclear structure calculations"
+	"github/johnlees/pp-sketchlib": {
+	"id": "github/johnlees/pp-sketchlib",
+	"title": "github/johnlees/pp-sketchlib",
+	"url": " https://rseng.github.io/software/repository/github/johnlees/pp-sketchlib",
+	"content": "Library of sketching functions used by PopPUNK"
 	},
-	"github/siriobelli/flame": {
-	"id": "github/siriobelli/flame",
-	"title": "github/siriobelli/flame",
-	"url": " https://rseng.github.io/software/repository/github/siriobelli/flame",
-	"content": "Flame data reduction pipeline"
+	"github/johnlees/seer": {
+	"id": "github/johnlees/seer",
+	"title": "github/johnlees/seer",
+	"url": " https://rseng.github.io/software/repository/github/johnlees/seer",
+	"content": "sequence element (kmer) enrichment analysis"
 	},
-	"github/viash-io/viash": {
-	"id": "github/viash-io/viash",
-	"title": "github/viash-io/viash",
-	"url": " https://rseng.github.io/software/repository/github/viash-io/viash",
-	"content": "script + metadata = standalone component"
+	"github/johnlees/PopPUNK": {
+	"id": "github/johnlees/PopPUNK",
+	"title": "github/johnlees/PopPUNK",
+	"url": " https://rseng.github.io/software/repository/github/johnlees/PopPUNK",
+	"content": "PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)"
 	},
-	"github/mcgalcode/pylattica": {
-	"id": "github/mcgalcode/pylattica",
-	"title": "github/mcgalcode/pylattica",
-	"url": " https://rseng.github.io/software/repository/github/mcgalcode/pylattica",
-	"content": "A simple framework for prototyping lattice evolution simulations e.g. cellular automata, lattice gas simulations, lattice Monte Carlo etc."
+	"github/wbalmer/backtracks": {
+	"id": "github/wbalmer/backtracks",
+	"title": "github/wbalmer/backtracks",
+	"url": " https://rseng.github.io/software/repository/github/wbalmer/backtracks",
+	"content": "Python package to fit relative astrometry with background star motion tracks. "
 	},
-	"github/mbejger/polgraw-allsky": {
-	"id": "github/mbejger/polgraw-allsky",
-	"title": "github/mbejger/polgraw-allsky",
-	"url": " https://rseng.github.io/software/repository/github/mbejger/polgraw-allsky",
-	"content": "All-sky search code (Polgraw group)"
+	"github/wbalmer/backtrack": {
+	"id": "github/wbalmer/backtrack",
+	"title": "github/wbalmer/backtrack",
+	"url": " https://rseng.github.io/software/repository/github/wbalmer/backtrack",
+	"content": "Python package to fit relative astrometry with background star motion tracks. "
 	},
-	"github/CajoterBraak/demc2": {
-	"id": "github/CajoterBraak/demc2",
-	"title": "github/CajoterBraak/demc2",
-	"url": " https://rseng.github.io/software/repository/github/CajoterBraak/demc2",
-	"content": "Differential Evolution Markov Chain parameter estimation"
+	"github/GenomePathogenAnalysisService/read-it-and-keep": {
+	"id": "github/GenomePathogenAnalysisService/read-it-and-keep",
+	"title": "github/GenomePathogenAnalysisService/read-it-and-keep",
+	"url": " https://rseng.github.io/software/repository/github/GenomePathogenAnalysisService/read-it-and-keep",
+	"content": "Read contamination removal"
 	},
-	"github/londumas/redvsblue": {
-	"id": "github/londumas/redvsblue",
-	"title": "github/londumas/redvsblue",
-	"url": " https://rseng.github.io/software/repository/github/londumas/redvsblue",
-	"content": "Quasar and emission line precise redshift fitting from prior"
+	"github/nekokoe/Plasmer": {
+	"id": "github/nekokoe/Plasmer",
+	"title": "github/nekokoe/Plasmer",
+	"url": " https://rseng.github.io/software/repository/github/nekokoe/Plasmer",
+	"content": "An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features."
 	},
-	"github/yuliadm/mixComp": {
-	"id": "github/yuliadm/mixComp",
-	"title": "github/yuliadm/mixComp",
-	"url": " https://rseng.github.io/software/repository/github/yuliadm/mixComp",
-	"content": "None"
+	"github/swiftbiosciences/primerclip": {
+	"id": "github/swiftbiosciences/primerclip",
+	"title": "github/swiftbiosciences/primerclip",
+	"url": " https://rseng.github.io/software/repository/github/swiftbiosciences/primerclip",
+	"content": "Swift Accel-Amplicon primer trimming tool for fast alignment-based primer trimming"
 	},
-	"github/smillerc/CurvilinearGrids.jl": {
-	"id": "github/smillerc/CurvilinearGrids.jl",
-	"title": "github/smillerc/CurvilinearGrids.jl",
-	"url": " https://rseng.github.io/software/repository/github/smillerc/CurvilinearGrids.jl",
-	"content": "A Julia library for working with curvilinear grids"
+	"github/tornede/py_experimenter": {
+	"id": "github/tornede/py_experimenter",
+	"title": "github/tornede/py_experimenter",
+	"url": " https://rseng.github.io/software/repository/github/tornede/py_experimenter",
+	"content": "The PyExperimenter is a tool for the automatic execution of experiments, e.g. for machine learning (ML), capturing corresponding results in a unified manner in a database. "
 	},
-	"github/yangfangs/KPP": {
-	"id": "github/yangfangs/KPP",
-	"title": "github/yangfangs/KPP",
-	"url": " https://rseng.github.io/software/repository/github/yangfangs/KPP",
-	"content": "KPP (kmer phylogenetic profile) algorithm"
+	"github/clemson-cal/sailfish": {
+	"id": "github/clemson-cal/sailfish",
+	"title": "github/clemson-cal/sailfish",
+	"url": " https://rseng.github.io/software/repository/github/clemson-cal/sailfish",
+	"content": "GPU-accelerated astrophysics gas dynamics code"
 	},
-	"github/yangfangs/test_GFICLEE": {
-	"id": "github/yangfangs/test_GFICLEE",
-	"title": "github/yangfangs/test_GFICLEE",
-	"url": " https://rseng.github.io/software/repository/github/yangfangs/test_GFICLEE",
-	"content": "test GFICLEE model"
+	"github/PanKonstantinos/MEvA-X": {
+	"id": "github/PanKonstantinos/MEvA-X",
+	"title": "github/PanKonstantinos/MEvA-X",
+	"url": " https://rseng.github.io/software/repository/github/PanKonstantinos/MEvA-X",
+	"content": "Open source Biomarker discovery tool based on multi-objective Evolutionary algorithm and the XGBoost Classifier"
 	},
-	"github/combustiontoolbox/combustion_toolbox": {
-	"id": "github/combustiontoolbox/combustion_toolbox",
-	"title": "github/combustiontoolbox/combustion_toolbox",
-	"url": " https://rseng.github.io/software/repository/github/combustiontoolbox/combustion_toolbox",
-	"content": "A MATLAB-GUI based open-source tool for solving gaseous combustion problems"
+	"github/BU-hammerTeam/PyHammer": {
+	"id": "github/BU-hammerTeam/PyHammer",
+	"title": "github/BU-hammerTeam/PyHammer",
+	"url": " https://rseng.github.io/software/repository/github/BU-hammerTeam/PyHammer",
+	"content": "A Python Spectral Typing Suite"
 	},
-	"github/zhoux85/scAdapt": {
-	"id": "github/zhoux85/scAdapt",
-	"title": "github/zhoux85/scAdapt",
-	"url": " https://rseng.github.io/software/repository/github/zhoux85/scAdapt",
-	"content": "None"
+	"github/infer-actively/pymdp": {
+	"id": "github/infer-actively/pymdp",
+	"title": "github/infer-actively/pymdp",
+	"url": " https://rseng.github.io/software/repository/github/infer-actively/pymdp",
+	"content": "A Python implementation of active inference for Markov Decision Processes"
 	},
-	"github/yair111/AnalyticLC": {
-	"id": "github/yair111/AnalyticLC",
-	"title": "github/yair111/AnalyticLC",
-	"url": " https://rseng.github.io/software/repository/github/yair111/AnalyticLC",
-	"content": "None"
+	"github/kuenzelab/ENDURE": {
+	"id": "github/kuenzelab/ENDURE",
+	"title": "github/kuenzelab/ENDURE",
+	"url": " https://rseng.github.io/software/repository/github/kuenzelab/ENDURE",
+	"content": "Tool for energy breakdown analysis of protein designs"
 	},
-	"github/UK-Digital-Heart-Project/4Dsegment": {
-	"id": "github/UK-Digital-Heart-Project/4Dsegment",
-	"title": "github/UK-Digital-Heart-Project/4Dsegment",
-	"url": " https://rseng.github.io/software/repository/github/UK-Digital-Heart-Project/4Dsegment",
-	"content": "None"
+	"github/GeneDx/scramble": {
+	"id": "github/GeneDx/scramble",
+	"title": "github/GeneDx/scramble",
+	"url": " https://rseng.github.io/software/repository/github/GeneDx/scramble",
+	"content": "runs as a two-step process. First cluster_identifier is used to generate soft-clipped read cluster consensus sequences. Second, SCRAMBle-MEIs.R analyzes the cluster file for likely Mobile Element Insertions."
 	},
-	"github/UK-Digital-Heart-Project/4Dsurvival": {
-	"id": "github/UK-Digital-Heart-Project/4Dsurvival",
-	"title": "github/UK-Digital-Heart-Project/4Dsurvival",
-	"url": " https://rseng.github.io/software/repository/github/UK-Digital-Heart-Project/4Dsurvival",
-	"content": "Deep learning cardiac motion analysis for survival prediction"
+	"github/dynamicslab/pysindy": {
+	"id": "github/dynamicslab/pysindy",
+	"title": "github/dynamicslab/pysindy",
+	"url": " https://rseng.github.io/software/repository/github/dynamicslab/pysindy",
+	"content": "A package for the sparse identification of nonlinear dynamical systems from data"
 	},
-	"github/mosdef-hub/foyer": {
-	"id": "github/mosdef-hub/foyer",
-	"title": "github/mosdef-hub/foyer",
-	"url": " https://rseng.github.io/software/repository/github/mosdef-hub/foyer",
-	"content": "A package for atom-typing as well as applying and disseminating forcefields"
+	"github/aertslab/pySCENIC": {
+	"id": "github/aertslab/pySCENIC",
+	"title": "github/aertslab/pySCENIC",
+	"url": " https://rseng.github.io/software/repository/github/aertslab/pySCENIC",
+	"content": "pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data."
 	},
-	"github/mosdef-hub/mbuild": {
-	"id": "github/mosdef-hub/mbuild",
-	"title": "github/mosdef-hub/mbuild",
-	"url": " https://rseng.github.io/software/repository/github/mosdef-hub/mbuild",
-	"content": "A hierarchical, component based molecule builder"
+	"github/marccanby/linguiphyr": {
+	"id": "github/marccanby/linguiphyr",
+	"title": "github/marccanby/linguiphyr",
+	"url": " https://rseng.github.io/software/repository/github/marccanby/linguiphyr",
+	"content": "Linguistic Phylogenetic Analysis in R"
 	},
-	"github/SCIInstitute/UncertainSCI": {
-	"id": "github/SCIInstitute/UncertainSCI",
-	"title": "github/SCIInstitute/UncertainSCI",
-	"url": " https://rseng.github.io/software/repository/github/SCIInstitute/UncertainSCI",
-	"content": "None"
+	"github/JorenSix/Panako": {
+	"id": "github/JorenSix/Panako",
+	"title": "github/JorenSix/Panako",
+	"url": " https://rseng.github.io/software/repository/github/JorenSix/Panako",
+	"content": "The Panako acoustic fingerprinting system."
 	},
-	"github/tatekawa-astron/3LPT-init": {
-	"id": "github/tatekawa-astron/3LPT-init",
-	"title": "github/tatekawa-astron/3LPT-init",
-	"url": " https://rseng.github.io/software/repository/github/tatekawa-astron/3LPT-init",
+	"github/JorenSix/Olaf": {
+	"id": "github/JorenSix/Olaf",
+	"title": "github/JorenSix/Olaf",
+	"url": " https://rseng.github.io/software/repository/github/JorenSix/Olaf",
+	"content": "Olaf: Overly Lightweight Acoustic Fingerprinting is a portable acoustic fingerprinting system."
+	},
+	"github/tkerscher/blast": {
+	"id": "github/tkerscher/blast",
+	"title": "github/tkerscher/blast",
+	"url": " https://rseng.github.io/software/repository/github/tkerscher/blast",
+	"content": "Synchrotron peak estimator for blazars"
+	},
+	"github/whybsml/whybsml": {
+	"id": "github/whybsml/whybsml",
+	"title": "github/whybsml/whybsml",
+	"url": " https://rseng.github.io/software/repository/github/whybsml/whybsml",
 	"content": "None"
 	},
-	"github/tatekawa-astron/PN": {
-	"id": "github/tatekawa-astron/PN",
-	"title": "github/tatekawa-astron/PN",
-	"url": " https://rseng.github.io/software/repository/github/tatekawa-astron/PN",
+	"github/vgl-hub/gfastats": {
+	"id": "github/vgl-hub/gfastats",
+	"title": "github/vgl-hub/gfastats",
+	"url": " https://rseng.github.io/software/repository/github/vgl-hub/gfastats",
+	"content": "A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation."
+	},
+	"github/AIgnesti/PT-REX": {
+	"id": "github/AIgnesti/PT-REX",
+	"title": "github/AIgnesti/PT-REX",
+	"url": " https://rseng.github.io/software/repository/github/AIgnesti/PT-REX",
 	"content": "None"
 	},
-	"github/bretthandrews/flexCE": {
-	"id": "github/bretthandrews/flexCE",
-	"title": "github/bretthandrews/flexCE",
-	"url": " https://rseng.github.io/software/repository/github/bretthandrews/flexCE",
-	"content": "A flexible Chemical Evolution model in python"
+	"github/Pinlyu3/LRLoop": {
+	"id": "github/Pinlyu3/LRLoop",
+	"title": "github/Pinlyu3/LRLoop",
+	"url": " https://rseng.github.io/software/repository/github/Pinlyu3/LRLoop",
+	"content": "LRLoop"
 	},
-	"github/sebastien-plutniak/archeofrag": {
-	"id": "github/sebastien-plutniak/archeofrag",
-	"title": "github/sebastien-plutniak/archeofrag",
-	"url": " https://rseng.github.io/software/repository/github/sebastien-plutniak/archeofrag",
-	"content": "R package for Refitting and Spatial Analysis in Archaeology"
+	"github/shankarpandala/lazypredict": {
+	"id": "github/shankarpandala/lazypredict",
+	"title": "github/shankarpandala/lazypredict",
+	"url": " https://rseng.github.io/software/repository/github/shankarpandala/lazypredict",
+	"content": "Lazy Predict help build a lot of basic models without much code and helps understand which models works better without any parameter tuning"
 	},
-	"github/sebastien-plutniak/archeoviz": {
-	"id": "github/sebastien-plutniak/archeoviz",
-	"title": "github/sebastien-plutniak/archeoviz",
-	"url": " https://rseng.github.io/software/repository/github/sebastien-plutniak/archeoviz",
-	"content": "Visualisation, Exploration, and Web Communication of Archaeological Spatial Data"
+	"github/FabioRigamonti/pyADfit": {
+	"id": "github/FabioRigamonti/pyADfit",
+	"title": "github/FabioRigamonti/pyADfit",
+	"url": " https://rseng.github.io/software/repository/github/FabioRigamonti/pyADfit",
+	"content": "A nested sampling approach to QSO accretion disc fitting."
 	},
-	"github/insilicomedicine/GENTRL": {
-	"id": "github/insilicomedicine/GENTRL",
-	"title": "github/insilicomedicine/GENTRL",
-	"url": " https://rseng.github.io/software/repository/github/insilicomedicine/GENTRL",
-	"content": "Generative Tensorial Reinforcement Learning (GENTRL) model"
+	"github/ziotom78/libpolycomp": {
+	"id": "github/ziotom78/libpolycomp",
+	"title": "github/ziotom78/libpolycomp",
+	"url": " https://rseng.github.io/software/repository/github/ziotom78/libpolycomp",
+	"content": "A compression library for one-dimensional numerical datastreams"
 	},
-	"github/python-hydro/pyro2": {
-	"id": "github/python-hydro/pyro2",
-	"title": "github/python-hydro/pyro2",
-	"url": " https://rseng.github.io/software/repository/github/python-hydro/pyro2",
-	"content": "A framework for hydrodynamics explorations and prototyping"
+	"github/ziotom78/dacapo_calibration": {
+	"id": "github/ziotom78/dacapo_calibration",
+	"title": "github/ziotom78/dacapo_calibration",
+	"url": " https://rseng.github.io/software/repository/github/ziotom78/dacapo_calibration",
+	"content": "Calibrating TODs using the Da Capo algorithm"
 	},
-	"github/songweizhi/Binning_refiner": {
-	"id": "github/songweizhi/Binning_refiner",
-	"title": "github/songweizhi/Binning_refiner",
-	"url": " https://rseng.github.io/software/repository/github/songweizhi/Binning_refiner",
-	"content": "Improving genome bins through the combination of different binning programs "
+	"github/ziotom78/Healpix.jl": {
+	"id": "github/ziotom78/Healpix.jl",
+	"title": "github/ziotom78/Healpix.jl",
+	"url": " https://rseng.github.io/software/repository/github/ziotom78/Healpix.jl",
+	"content": "Healpix library written in Julia"
 	},
-	"github/odelaneau/shapeit5": {
-	"id": "github/odelaneau/shapeit5",
-	"title": "github/odelaneau/shapeit5",
-	"url": " https://rseng.github.io/software/repository/github/odelaneau/shapeit5",
-	"content": "Segmented HAPlotype Estimation and Imputation Tool"
+	"github/NeuralEnsemble/PyNN": {
+	"id": "github/NeuralEnsemble/PyNN",
+	"title": "github/NeuralEnsemble/PyNN",
+	"url": " https://rseng.github.io/software/repository/github/NeuralEnsemble/PyNN",
+	"content": "A Python package for simulator-independent specification of neuronal network models."
 	},
-	"github/odelaneau/GLIMPSE": {
-	"id": "github/odelaneau/GLIMPSE",
-	"title": "github/odelaneau/GLIMPSE",
-	"url": " https://rseng.github.io/software/repository/github/odelaneau/GLIMPSE",
-	"content": "Low Coverage Calling of Genotypes"
+	"github/NeuralEnsemble/elephant": {
+	"id": "github/NeuralEnsemble/elephant",
+	"title": "github/NeuralEnsemble/elephant",
+	"url": " https://rseng.github.io/software/repository/github/NeuralEnsemble/elephant",
+	"content": "Elephant is the Electrophysiology Analysis Toolkit"
 	},
-	"github/odelaneau/shapeit4": {
-	"id": "github/odelaneau/shapeit4",
-	"title": "github/odelaneau/shapeit4",
-	"url": " https://rseng.github.io/software/repository/github/odelaneau/shapeit4",
-	"content": "Segmented HAPlotype Estimation and Imputation Tool"
+	"github/adrn/pyia": {
+	"id": "github/adrn/pyia",
+	"title": "github/adrn/pyia",
+	"url": " https://rseng.github.io/software/repository/github/adrn/pyia",
+	"content": "a Python package for working with data from the Gaia mission"
 	},
-	"github/LindaNab/mecor": {
-	"id": "github/LindaNab/mecor",
-	"title": "github/LindaNab/mecor",
-	"url": " https://rseng.github.io/software/repository/github/LindaNab/mecor",
-	"content": "measurement error correction"
+	"github/adrn/schwimmbad": {
+	"id": "github/adrn/schwimmbad",
+	"title": "github/adrn/schwimmbad",
+	"url": " https://rseng.github.io/software/repository/github/adrn/schwimmbad",
+	"content": "A common interface to processing pools."
 	},
-	"github/STOmics/EAGS": {
-	"id": "github/STOmics/EAGS",
-	"title": "github/STOmics/EAGS",
-	"url": " https://rseng.github.io/software/repository/github/STOmics/EAGS",
-	"content": "EAGS:efficient and adaptive Gaussian smoothing"
+	"github/adrn/SuperFreq": {
+	"id": "github/adrn/SuperFreq",
+	"title": "github/adrn/SuperFreq",
+	"url": " https://rseng.github.io/software/repository/github/adrn/SuperFreq",
+	"content": "Numerically determine the fundamental frequencies of an orbit"
 	},
-	"github/stefanradev93/BayesFlow": {
-	"id": "github/stefanradev93/BayesFlow",
-	"title": "github/stefanradev93/BayesFlow",
-	"url": " https://rseng.github.io/software/repository/github/stefanradev93/BayesFlow",
-	"content": "A Python library for amortized Bayesian workflows using generative neural networks."
+	"github/astrom-tom/dfitspy": {
+	"id": "github/astrom-tom/dfitspy",
+	"title": "github/astrom-tom/dfitspy",
+	"url": " https://rseng.github.io/software/repository/github/astrom-tom/dfitspy",
+	"content": "None"
 	},
-	"github/ProfessorBrunner/rc3-pipeline": {
-	"id": "github/ProfessorBrunner/rc3-pipeline",
-	"title": "github/ProfessorBrunner/rc3-pipeline",
-	"url": " https://rseng.github.io/software/repository/github/ProfessorBrunner/rc3-pipeline",
-	"content": "Make digital images of RC3 galaxies by using final, calibrated SDSS images"
+	"github/astrom-tom/specstack": {
+	"id": "github/astrom-tom/specstack",
+	"title": "github/astrom-tom/specstack",
+	"url": " https://rseng.github.io/software/repository/github/astrom-tom/specstack",
+	"content": "Simple spectral stacking from command line interface"
 	},
-	"github/Extraweich/homopy": {
-	"id": "github/Extraweich/homopy",
-	"title": "github/Extraweich/homopy",
-	"url": " https://rseng.github.io/software/repository/github/Extraweich/homopy",
-	"content": "Your solution for stiffness problems"
+	"github/beckermr/calclens": {
+	"id": "github/beckermr/calclens",
+	"title": "github/beckermr/calclens",
+	"url": " https://rseng.github.io/software/repository/github/beckermr/calclens",
+	"content": "Curved-sky grAvitational Lensing for Cosmological Light conE simulatioNS"
 	},
-	"github/mneeleman/qubefit": {
-	"id": "github/mneeleman/qubefit",
-	"title": "github/mneeleman/qubefit",
-	"url": " https://rseng.github.io/software/repository/github/mneeleman/qubefit",
+	"github/adammoss/supernovae": {
+	"id": "github/adammoss/supernovae",
+	"title": "github/adammoss/supernovae",
+	"url": " https://rseng.github.io/software/repository/github/adammoss/supernovae",
 	"content": "None"
 	},
-	"github/numpy/numpy": {
-	"id": "github/numpy/numpy",
-	"title": "github/numpy/numpy",
-	"url": " https://rseng.github.io/software/repository/github/numpy/numpy",
-	"content": "The fundamental package for scientific computing with Python."
+	"github/nnssa/gallumi_public": {
+	"id": "github/nnssa/gallumi_public",
+	"title": "github/nnssa/gallumi_public",
+	"url": " https://rseng.github.io/software/repository/github/nnssa/gallumi_public",
+	"content": "A Galaxy Luminosity Function Pipeline for Cosmology and Astrophysics"
 	},
-	"github/PNNL-m-q/mza": {
-	"id": "github/PNNL-m-q/mza",
-	"title": "github/PNNL-m-q/mza",
-	"url": " https://rseng.github.io/software/repository/github/PNNL-m-q/mza",
-	"content": "Software to convert multidimensional MS data from files in proprietary vendor formats to HDF5 format in the simple MZA data structure."
+	"github/Alcampopiano/hypothesize": {
+	"id": "github/Alcampopiano/hypothesize",
+	"title": "github/Alcampopiano/hypothesize",
+	"url": " https://rseng.github.io/software/repository/github/Alcampopiano/hypothesize",
+	"content": "Robust statistics in Python"
 	},
-	"github/luntergroup/octopus": {
-	"id": "github/luntergroup/octopus",
-	"title": "github/luntergroup/octopus",
-	"url": " https://rseng.github.io/software/repository/github/luntergroup/octopus",
-	"content": "Bayesian haplotype-based mutation calling"
+	"github/SchmollerLab/Cell_ACDC": {
+	"id": "github/SchmollerLab/Cell_ACDC",
+	"title": "github/SchmollerLab/Cell_ACDC",
+	"url": " https://rseng.github.io/software/repository/github/SchmollerLab/Cell_ACDC",
+	"content": "A Python GUI-based framework for segmentation, tracking and cell cycle annotations of micrscopy data"
 	},
-	"github/bthorne93/PySM_public": {
-	"id": "github/bthorne93/PySM_public",
-	"title": "github/bthorne93/PySM_public",
-	"url": " https://rseng.github.io/software/repository/github/bthorne93/PySM_public",
-	"content": "PySM: Software for simulating the Galactic microwave sky"
+	"github/CompNet/Renard": {
+	"id": "github/CompNet/Renard",
+	"title": "github/CompNet/Renard",
+	"url": " https://rseng.github.io/software/repository/github/CompNet/Renard",
+	"content": "Relationships Extraction from NARrative Documents"
 	},
-	"github/OSS-Lab/ChemChaste": {
-	"id": "github/OSS-Lab/ChemChaste",
-	"title": "github/OSS-Lab/ChemChaste",
-	"url": " https://rseng.github.io/software/repository/github/OSS-Lab/ChemChaste",
+	"github/CDSP-SCPO/metadata-middleware": {
+	"id": "github/CDSP-SCPO/metadata-middleware",
+	"title": "github/CDSP-SCPO/metadata-middleware",
+	"url": " https://rseng.github.io/software/repository/github/CDSP-SCPO/metadata-middleware",
 	"content": "None"
 	},
-	"github/FEniCS/basix": {
-	"id": "github/FEniCS/basix",
-	"title": "github/FEniCS/basix",
-	"url": " https://rseng.github.io/software/repository/github/FEniCS/basix",
-	"content": "FEniCS finite element basis evaluation library"
+	"github/CDSP-SCPO/dataverse-feed": {
+	"id": "github/CDSP-SCPO/dataverse-feed",
+	"title": "github/CDSP-SCPO/dataverse-feed",
+	"url": " https://rseng.github.io/software/repository/github/CDSP-SCPO/dataverse-feed",
+	"content": "Embed a feed of your Dataverse items (collections, datasets, files) in your webpage using the Dataverse search API. JavaScript module built with Svelte and Snowpack."
 	},
-	"github/FEniCS/ffcx": {
-	"id": "github/FEniCS/ffcx",
-	"title": "github/FEniCS/ffcx",
-	"url": " https://rseng.github.io/software/repository/github/FEniCS/ffcx",
-	"content": "Next generation FEniCS Form Compiler"
+	"github/CDSP-SCPO/WPSS-for-ESS-webpanel": {
+	"id": "github/CDSP-SCPO/WPSS-for-ESS-webpanel",
+	"title": "github/CDSP-SCPO/WPSS-for-ESS-webpanel",
+	"url": " https://rseng.github.io/software/repository/github/CDSP-SCPO/WPSS-for-ESS-webpanel",
+	"content": "None"
 	},
-	"github/jadexter/grtrans": {
-	"id": "github/jadexter/grtrans",
-	"title": "github/jadexter/grtrans",
-	"url": " https://rseng.github.io/software/repository/github/jadexter/grtrans",
-	"content": "Public Kerr metric polarized ray tracing radiative transfer code"
+	"github/PEJpOhno/SMiPoly": {
+	"id": "github/PEJpOhno/SMiPoly",
+	"title": "github/PEJpOhno/SMiPoly",
+	"url": " https://rseng.github.io/software/repository/github/PEJpOhno/SMiPoly",
+	"content": "rule-based virtual polymer library generator"
 	},
-	"github/tum-esm/pyra": {
-	"id": "github/tum-esm/pyra",
-	"title": "github/tum-esm/pyra",
-	"url": " https://rseng.github.io/software/repository/github/tum-esm/pyra",
-	"content": "Pyra: Automated EM27/SUN Greenhouse Gas Measurement Software"
+	"github/mgckind/SparsePz": {
+	"id": "github/mgckind/SparsePz",
+	"title": "github/mgckind/SparsePz",
+	"url": " https://rseng.github.io/software/repository/github/mgckind/SparsePz",
+	"content": "Sparse Representation of Photometric Redshift PDFs"
 	},
-	"github/mlysy/LocalCop": {
-	"id": "github/mlysy/LocalCop",
-	"title": "github/mlysy/LocalCop",
-	"url": " https://rseng.github.io/software/repository/github/mlysy/LocalCop",
-	"content": "Local Likelihood Inference for Conditional Copulas"
+	"github/mgckind/easyaccess": {
+	"id": "github/mgckind/easyaccess",
+	"title": "github/mgckind/easyaccess",
+	"url": " https://rseng.github.io/software/repository/github/mgckind/easyaccess",
+	"content": "SQL command line interpreter for astronomical surveys"
 	},
-	"github/ec363/fpcountr": {
-	"id": "github/ec363/fpcountr",
-	"title": "github/ec363/fpcountr",
-	"url": " https://rseng.github.io/software/repository/github/ec363/fpcountr",
-	"content": "Fluorescent protein calibration for plate readers"
+	"github/ihrke/pypillometry": {
+	"id": "github/ihrke/pypillometry",
+	"title": "github/ihrke/pypillometry",
+	"url": " https://rseng.github.io/software/repository/github/ihrke/pypillometry",
+	"content": "pupillometry with python"
 	},
-	"github/ec363/parsleyapp": {
-	"id": "github/ec363/parsleyapp",
-	"title": "github/ec363/parsleyapp",
-	"url": " https://rseng.github.io/software/repository/github/ec363/parsleyapp",
-	"content": "Data parsing (data extraction, tidying and metadata joining) for plate reader export files"
+	"github/vterron/lemon": {
+	"id": "github/vterron/lemon",
+	"title": "github/vterron/lemon",
+	"url": " https://rseng.github.io/software/repository/github/vterron/lemon",
+	"content": "Differential photometry for humans (and astronomers)"
 	},
-	"github/glass-dev/glass": {
-	"id": "github/glass-dev/glass",
-	"title": "github/glass-dev/glass",
-	"url": " https://rseng.github.io/software/repository/github/glass-dev/glass",
-	"content": "Generator for Large Scale Structure"
+	"github/flu-crew/smot": {
+	"id": "github/flu-crew/smot",
+	"title": "github/flu-crew/smot",
+	"url": " https://rseng.github.io/software/repository/github/flu-crew/smot",
+	"content": "Simple Manipulation Of Trees"
 	},
-	"github/lifs-tools/goslin": {
-	"id": "github/lifs-tools/goslin",
-	"title": "github/lifs-tools/goslin",
-	"url": " https://rseng.github.io/software/repository/github/lifs-tools/goslin",
-	"content": "Goslin is the Grammar on succinct lipid nomenclature."
+	"github/biolab/orange3": {
+	"id": "github/biolab/orange3",
+	"title": "github/biolab/orange3",
+	"url": " https://rseng.github.io/software/repository/github/biolab/orange3",
+	"content": "🍊 :bar_chart: :bulb: Orange: Interactive data analysis https://orange.biolab.si"
 	},
-	"github/lifs-tools/jmzTab-m": {
-	"id": "github/lifs-tools/jmzTab-m",
-	"title": "github/lifs-tools/jmzTab-m",
-	"url": " https://rseng.github.io/software/repository/github/lifs-tools/jmzTab-m",
-	"content": "Reference implementation for mzTab-M 2.0 for metabolomics"
+	"github/biolab/orange3-network": {
+	"id": "github/biolab/orange3-network",
+	"title": "github/biolab/orange3-network",
+	"url": " https://rseng.github.io/software/repository/github/biolab/orange3-network",
+	"content": "🍊 🕸 Network analysis add-on for Orange data mining suite."
 	},
-	"github/bc3LC/gcamreport": {
-	"id": "github/bc3LC/gcamreport",
-	"title": "github/bc3LC/gcamreport",
-	"url": " https://rseng.github.io/software/repository/github/bc3LC/gcamreport",
-	"content": "Package to process GCAM results and standardize the format"
+	"github/biolab/orange-bio": {
+	"id": "github/biolab/orange-bio",
+	"title": "github/biolab/orange-bio",
+	"url": " https://rseng.github.io/software/repository/github/biolab/orange-bio",
+	"content": "None"
 	},
-	"github/stevertaylor/gw_pta_emulator": {
-	"id": "github/stevertaylor/gw_pta_emulator",
-	"title": "github/stevertaylor/gw_pta_emulator",
-	"url": " https://rseng.github.io/software/repository/github/stevertaylor/gw_pta_emulator",
-	"content": "A notebook and data associated with the paper Taylor, Simon, Sampson (2017)"
+	"github/benmontet/f3": {
+	"id": "github/benmontet/f3",
+	"title": "github/benmontet/f3",
+	"url": " https://rseng.github.io/software/repository/github/benmontet/f3",
+	"content": "Full Frame Fotometry from the Kepler Full Frame Images"
 	},
-	"github/biolab-unige/nifti2dicom": {
-	"id": "github/biolab-unige/nifti2dicom",
-	"title": "github/biolab-unige/nifti2dicom",
-	"url": " https://rseng.github.io/software/repository/github/biolab-unige/nifti2dicom",
-	"content": "Convert 3D NIfTI images (and other formats supported by ITK) to DICOM 2D series"
+	"github/hishamhm/htop": {
+	"id": "github/hishamhm/htop",
+	"title": "github/hishamhm/htop",
+	"url": " https://rseng.github.io/software/repository/github/hishamhm/htop",
+	"content": "htop is an interactive text-mode process viewer for Unix systems. It aims to be a better &#39;top&#39;."
 	},
-	"github/supernnova/SuperNNova": {
-	"id": "github/supernnova/SuperNNova",
-	"title": "github/supernnova/SuperNNova",
-	"url": " https://rseng.github.io/software/repository/github/supernnova/SuperNNova",
-	"content": "Open Source Photometric classification https://supernnova.readthedocs.io"
+	"github/rmjarvis/Piff": {
+	"id": "github/rmjarvis/Piff",
+	"title": "github/rmjarvis/Piff",
+	"url": " https://rseng.github.io/software/repository/github/rmjarvis/Piff",
+	"content": "PSFs In the Full FOV.  A software package for modeling the point-spread function (PSF) across the full field of view (FOV).  Documentation:"
 	},
-	"github/cau-se/ARCHES-PiCar-X": {
-	"id": "github/cau-se/ARCHES-PiCar-X",
-	"title": "github/cau-se/ARCHES-PiCar-X",
-	"url": " https://rseng.github.io/software/repository/github/cau-se/ARCHES-PiCar-X",
-	"content": "Software for digital twin research"
+	"github/rmjarvis/TreeCorr": {
+	"id": "github/rmjarvis/TreeCorr",
+	"title": "github/rmjarvis/TreeCorr",
+	"url": " https://rseng.github.io/software/repository/github/rmjarvis/TreeCorr",
+	"content": "Code for efficiently computing 2-point and 3-point correlation functions. For documentation, go to"
 	},
-	"github/narunlifescience/runcircos-gui": {
-	"id": "github/narunlifescience/runcircos-gui",
-	"title": "github/narunlifescience/runcircos-gui",
-	"url": " https://rseng.github.io/software/repository/github/narunlifescience/runcircos-gui",
-	"content": ":radio_button: GUI tool to run circos"
+	"github/mne-tools/mne-icalabel": {
+	"id": "github/mne-tools/mne-icalabel",
+	"title": "github/mne-tools/mne-icalabel",
+	"url": " https://rseng.github.io/software/repository/github/mne-tools/mne-icalabel",
+	"content": "Automatic labeling of ICA components in Python."
 	},
-	"github/anchal-009/SAVED21cm": {
-	"id": "github/anchal-009/SAVED21cm",
-	"title": "github/anchal-009/SAVED21cm",
-	"url": " https://rseng.github.io/software/repository/github/anchal-009/SAVED21cm",
-	"content": "A toolbox for extracting the 21cm signal from the simulated mock observation for REACH."
+	"github/mne-tools/mne-python": {
+	"id": "github/mne-tools/mne-python",
+	"title": "github/mne-tools/mne-python",
+	"url": " https://rseng.github.io/software/repository/github/mne-tools/mne-python",
+	"content": "MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python"
 	},
-	"github/ismael-mendoza/ShapeMeasurementFisherFormalism": {
-	"id": "github/ismael-mendoza/ShapeMeasurementFisherFormalism",
-	"title": "github/ismael-mendoza/ShapeMeasurementFisherFormalism",
-	"url": " https://rseng.github.io/software/repository/github/ismael-mendoza/ShapeMeasurementFisherFormalism",
-	"content": "Fisher Formalism for Weak Lensing using 1 or 2 Galsim galaxies."
+	"github/TrackerControl/tracker-control-android": {
+	"id": "github/TrackerControl/tracker-control-android",
+	"title": "github/TrackerControl/tracker-control-android",
+	"url": " https://rseng.github.io/software/repository/github/TrackerControl/tracker-control-android",
+	"content": "TrackerControl: monitor and control trackers and ads."
 	},
-	"github/dgobbi/vtk-dicom": {
-	"id": "github/dgobbi/vtk-dicom",
-	"title": "github/dgobbi/vtk-dicom",
-	"url": " https://rseng.github.io/software/repository/github/dgobbi/vtk-dicom",
-	"content": "A set of classes for using DICOM in VTK."
+	"github/TNEL-UCSD/autolfads-deploy": {
+	"id": "github/TNEL-UCSD/autolfads-deploy",
+	"title": "github/TNEL-UCSD/autolfads-deploy",
+	"url": " https://rseng.github.io/software/repository/github/TNEL-UCSD/autolfads-deploy",
+	"content": "Deployment strategies for AutoLFADS"
 	},
-	"github/patkel/big-macs-calibrate": {
-	"id": "github/patkel/big-macs-calibrate",
-	"title": "github/patkel/big-macs-calibrate",
-	"url": " https://rseng.github.io/software/repository/github/patkel/big-macs-calibrate",
-	"content": "Automatically exported from code.google.com/p/big-macs-calibrate"
+	"github/lys-devel/lys": {
+	"id": "github/lys-devel/lys",
+	"title": "github/lys-devel/lys",
+	"url": " https://rseng.github.io/software/repository/github/lys-devel/lys",
+	"content": "Interactive multi-dimensional data analysis and visualization"
 	},
-	"github/czbiohub-sf/Rapid-QC-MS": {
-	"id": "github/czbiohub-sf/Rapid-QC-MS",
-	"title": "github/czbiohub-sf/Rapid-QC-MS",
-	"url": " https://rseng.github.io/software/repository/github/czbiohub-sf/Rapid-QC-MS",
-	"content": "Realtime quality control for mass spectrometry data acquisition"
+	"github/ncbi/SRPRISM": {
+	"id": "github/ncbi/SRPRISM",
+	"title": "github/ncbi/SRPRISM",
+	"url": " https://rseng.github.io/software/repository/github/ncbi/SRPRISM",
+	"content": "Short Read Alignment Tool"
 	},
-	"github/kingyin3613/RingsPy": {
-	"id": "github/kingyin3613/RingsPy",
-	"title": "github/kingyin3613/RingsPy",
-	"url": " https://rseng.github.io/software/repository/github/kingyin3613/RingsPy",
-	"content": "A Python automated geometric generation tool that generates 3D meshes of prismatic cellular solids with radial growth rules based on Voronoi diagrams."
+	"github/ncbi/BAMscale": {
+	"id": "github/ncbi/BAMscale",
+	"title": "github/ncbi/BAMscale",
+	"url": " https://rseng.github.io/software/repository/github/ncbi/BAMscale",
+	"content": "BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy visualization of commonly used DNA-seq capture based methods."
 	},
-	"github/gogrean/PyXel": {
-	"id": "github/gogrean/PyXel",
-	"title": "github/gogrean/PyXel",
-	"url": " https://rseng.github.io/software/repository/github/gogrean/PyXel",
-	"content": "Package for modeling X-ray surface brightness profiles."
+	"github/ncbi/SKESA": {
+	"id": "github/ncbi/SKESA",
+	"title": "github/ncbi/SKESA",
+	"url": " https://rseng.github.io/software/repository/github/ncbi/SKESA",
+	"content": "SKESA assembler"
 	},
-	"github/NickMilsonPhysics/BinaryStarSolver": {
-	"id": "github/NickMilsonPhysics/BinaryStarSolver",
-	"title": "github/NickMilsonPhysics/BinaryStarSolver",
-	"url": " https://rseng.github.io/software/repository/github/NickMilsonPhysics/BinaryStarSolver",
-	"content": "BinaryStarSolver is a Python 3 program which solves for the orbital elements of binary stars, given radial velocity time series"
+	"github/ncbi/sra-tools": {
+	"id": "github/ncbi/sra-tools",
+	"title": "github/ncbi/sra-tools",
+	"url": " https://rseng.github.io/software/repository/github/ncbi/sra-tools",
+	"content": "SRA Tools"
 	},
-	"github/csmsoftware/IMPaCTS": {
-	"id": "github/csmsoftware/IMPaCTS",
-	"title": "github/csmsoftware/IMPaCTS",
-	"url": " https://rseng.github.io/software/repository/github/csmsoftware/IMPaCTS",
-	"content": "Imperial Metabolic Profiling and Chemometrics Toolbox for Spectroscopy"
+	"github/ncbi/igblast": {
+	"id": "github/ncbi/igblast",
+	"title": "github/ncbi/igblast",
+	"url": " https://rseng.github.io/software/repository/github/ncbi/igblast",
+	"content": "Immunoglobulin and T cell receptor variable domain sequence analysis"
 	},
-	"github/shaniAmare/long_read_tools": {
-	"id": "github/shaniAmare/long_read_tools",
-	"title": "github/shaniAmare/long_read_tools",
-	"url": " https://rseng.github.io/software/repository/github/shaniAmare/long_read_tools",
-	"content": "A catalogue of available long read sequencing data analysis tools"
+	"github/ncbi/TPMCalculator": {
+	"id": "github/ncbi/TPMCalculator",
+	"title": "github/ncbi/TPMCalculator",
+	"url": " https://rseng.github.io/software/repository/github/ncbi/TPMCalculator",
+	"content": "TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files"
 	},
-	"github/RafaelSdeSouza/qrpca": {
-	"id": "github/RafaelSdeSouza/qrpca",
-	"title": "github/RafaelSdeSouza/qrpca",
-	"url": " https://rseng.github.io/software/repository/github/RafaelSdeSouza/qrpca",
-	"content": "QR based Principal Components Analysis"
+	"github/ncbi/vadr": {
+	"id": "github/ncbi/vadr",
+	"title": "github/ncbi/vadr",
+	"url": " https://rseng.github.io/software/repository/github/ncbi/vadr",
+	"content": "Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation"
 	},
-	"github/snugel/cas-offinder": {
-	"id": "github/snugel/cas-offinder",
-	"title": "github/snugel/cas-offinder",
-	"url": " https://rseng.github.io/software/repository/github/snugel/cas-offinder",
-	"content": "An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases."
+	"github/ncbi/datasets": {
+	"id": "github/ncbi/datasets",
+	"title": "github/ncbi/datasets",
+	"url": " https://rseng.github.io/software/repository/github/ncbi/datasets",
+	"content": "NCBI Datasets is an experimental resource for finding and building datasets"
 	},
-	"github/pedro-acunha/SHEEP": {
-	"id": "github/pedro-acunha/SHEEP",
-	"title": "github/pedro-acunha/SHEEP",
-	"url": " https://rseng.github.io/software/repository/github/pedro-acunha/SHEEP",
-	"content": "Machine Learning pipeline to classify astronomical sources into galaxies, quasars and stars using photometric data."
+	"github/ncbi/ncbi-vdb": {
+	"id": "github/ncbi/ncbi-vdb",
+	"title": "github/ncbi/ncbi-vdb",
+	"url": " https://rseng.github.io/software/repository/github/ncbi/ncbi-vdb",
+	"content": "ncbi-vdb"
 	},
-	"github/emunte/vaRHC": {
-	"id": "github/emunte/vaRHC",
-	"title": "github/emunte/vaRHC",
-	"url": " https://rseng.github.io/software/repository/github/emunte/vaRHC",
-	"content": "None"
+	"github/ncbi/ngs": {
+	"id": "github/ncbi/ngs",
+	"title": "github/ncbi/ngs",
+	"url": " https://rseng.github.io/software/repository/github/ncbi/ngs",
+	"content": "NGS Language Bindings"
 	},
-	"github/lucianolorenti/ceruleo": {
-	"id": "github/lucianolorenti/ceruleo",
-	"title": "github/lucianolorenti/ceruleo",
-	"url": " https://rseng.github.io/software/repository/github/lucianolorenti/ceruleo",
-	"content": "CeRULEo: Comprehensive utilitiEs for Remaining Useful Life Estimation methOds"
+	"github/CouncilDataProject/cookiecutter-cdp-deployment": {
+	"id": "github/CouncilDataProject/cookiecutter-cdp-deployment",
+	"title": "github/CouncilDataProject/cookiecutter-cdp-deployment",
+	"url": " https://rseng.github.io/software/repository/github/CouncilDataProject/cookiecutter-cdp-deployment",
+	"content": "Cookiecutter template for creating new CDP instances."
 	},
-	"github/florian-lienhard/MM-LSD": {
-	"id": "github/florian-lienhard/MM-LSD",
-	"title": "github/florian-lienhard/MM-LSD",
-	"url": " https://rseng.github.io/software/repository/github/florian-lienhard/MM-LSD",
-	"content": "None"
+	"github/CouncilDataProject/speakerbox": {
+	"id": "github/CouncilDataProject/speakerbox",
+	"title": "github/CouncilDataProject/speakerbox",
+	"url": " https://rseng.github.io/software/repository/github/CouncilDataProject/speakerbox",
+	"content": "Speakerbox: Fine-tune Audio Transformers for speaker identification."
 	},
-	"github/awsteiner/o2scl": {
-	"id": "github/awsteiner/o2scl",
-	"title": "github/awsteiner/o2scl",
-	"url": " https://rseng.github.io/software/repository/github/awsteiner/o2scl",
-	"content": "Object-oriented Scientific Computing Library"
+	"github/hajimes/mmh3": {
+	"id": "github/hajimes/mmh3",
+	"title": "github/hajimes/mmh3",
+	"url": " https://rseng.github.io/software/repository/github/hajimes/mmh3",
+	"content": "Python extension for MurmurHash (MurmurHash3), a set of fast and robust hash functions."
 	},
-	"github/awsteiner/bamr": {
-	"id": "github/awsteiner/bamr",
-	"title": "github/awsteiner/bamr",
-	"url": " https://rseng.github.io/software/repository/github/awsteiner/bamr",
-	"content": "Bayesian Analysis of neutron star Mass and Radius observations"
+	"github/olivares-j/Kalkayotl": {
+	"id": "github/olivares-j/Kalkayotl",
+	"title": "github/olivares-j/Kalkayotl",
+	"url": " https://rseng.github.io/software/repository/github/olivares-j/Kalkayotl",
+	"content": "This repository contains a code to infer distances to stellar clusters and its stars from  Gaia parallaxes."
 	},
-	"github/HajkD/LTRpred": {
-	"id": "github/HajkD/LTRpred",
-	"title": "github/HajkD/LTRpred",
-	"url": " https://rseng.github.io/software/repository/github/HajkD/LTRpred",
-	"content": "De novo annotation of intact retrotransposons"
+	"github/ParkvilleData/MetaGenePipe": {
+	"id": "github/ParkvilleData/MetaGenePipe",
+	"title": "github/ParkvilleData/MetaGenePipe",
+	"url": " https://rseng.github.io/software/repository/github/ParkvilleData/MetaGenePipe",
+	"content": "MGP"
 	},
-	"github/martin3141/spant": {
-	"id": "github/martin3141/spant",
-	"title": "github/martin3141/spant",
-	"url": " https://rseng.github.io/software/repository/github/martin3141/spant",
-	"content": "Tools for reading, visualising and processing Magnetic Resonance Spectroscopy data"
+	"github/thomaspinder/GPJax": {
+	"id": "github/thomaspinder/GPJax",
+	"title": "github/thomaspinder/GPJax",
+	"url": " https://rseng.github.io/software/repository/github/thomaspinder/GPJax",
+	"content": "A didactic Gaussian process package for researchers in Jax."
 	},
-	"github/e-merlin/eMERLIN_CASA_pipeline": {
-	"id": "github/e-merlin/eMERLIN_CASA_pipeline",
-	"title": "github/e-merlin/eMERLIN_CASA_pipeline",
-	"url": " https://rseng.github.io/software/repository/github/e-merlin/eMERLIN_CASA_pipeline",
-	"content": "This is CASA eMERLIN pipeline to calibrate data from the e-MERLIN array. Please fork the repository before making any changes and read the Coding Practices page in the wiki. Please add issues with the pipeline in the issues tab."
+	"github/stefanradev93/BayesFlow": {
+	"id": "github/stefanradev93/BayesFlow",
+	"title": "github/stefanradev93/BayesFlow",
+	"url": " https://rseng.github.io/software/repository/github/stefanradev93/BayesFlow",
+	"content": "A Python library for amortized Bayesian workflows using generative neural networks."
 	},
-	"github/MayaWaves/mayawaves": {
-	"id": "github/MayaWaves/mayawaves",
-	"title": "github/MayaWaves/mayawaves",
-	"url": " https://rseng.github.io/software/repository/github/MayaWaves/mayawaves",
-	"content": "None"
+	"github/dkoboldt/varscan": {
+	"id": "github/dkoboldt/varscan",
+	"title": "github/dkoboldt/varscan",
+	"url": " https://rseng.github.io/software/repository/github/dkoboldt/varscan",
+	"content": "Variant calling and somatic mutation/CNV detection for next-generation sequencing data"
 	},
-	"github/gourabghoshroy/MPVNN": {
-	"id": "github/gourabghoshroy/MPVNN",
-	"title": "github/gourabghoshroy/MPVNN",
-	"url": " https://rseng.github.io/software/repository/github/gourabghoshroy/MPVNN",
-	"content": "MUTATED PATHWAY VISIBLE NEURAL NETWORK FOR CANCER SPECIFIC SURVIVAL RISK PREDICTION"
+	"github/soylentdeen/MoogStokes": {
+	"id": "github/soylentdeen/MoogStokes",
+	"title": "github/soylentdeen/MoogStokes",
+	"url": " https://rseng.github.io/software/repository/github/soylentdeen/MoogStokes",
+	"content": "Artisanal Zeeman Radiative Transfer"
 	},
-	"github/COSIMA/regional-mom6": {
-	"id": "github/COSIMA/regional-mom6",
-	"title": "github/COSIMA/regional-mom6",
-	"url": " https://rseng.github.io/software/repository/github/COSIMA/regional-mom6",
-	"content": "Automatic generation of regional configurations of the Modular Ocean Model 6 (MOM6) in Python"
+	"github/soylentdeen/CounterPoint": {
+	"id": "github/soylentdeen/CounterPoint",
+	"title": "github/soylentdeen/CounterPoint",
+	"url": " https://rseng.github.io/software/repository/github/soylentdeen/CounterPoint",
+	"content": "Python Companion to MoogStokes"
 	},
-	"github/CLIMADA-project/climada_python": {
-	"id": "github/CLIMADA-project/climada_python",
-	"title": "github/CLIMADA-project/climada_python",
-	"url": " https://rseng.github.io/software/repository/github/CLIMADA-project/climada_python",
-	"content": "Python (3.8+) version of CLIMADA"
+	"github/anmolter/XLUR": {
+	"id": "github/anmolter/XLUR",
+	"title": "github/anmolter/XLUR",
+	"url": " https://rseng.github.io/software/repository/github/anmolter/XLUR",
+	"content": "A Python toolbox for ArcGIS Pro  that enables the development and application of land use regression models."
 	},
-	"github/AMReX-Combustion/PeleLMeX": {
-	"id": "github/AMReX-Combustion/PeleLMeX",
-	"title": "github/AMReX-Combustion/PeleLMeX",
-	"url": " https://rseng.github.io/software/repository/github/AMReX-Combustion/PeleLMeX",
-	"content": "An adaptive mesh hydrodynamics simulation code for low Mach number reacting flows without level sub-cycling."
+	"github/dpalmasan/TRUNAJOD2.0": {
+	"id": "github/dpalmasan/TRUNAJOD2.0",
+	"title": "github/dpalmasan/TRUNAJOD2.0",
+	"url": " https://rseng.github.io/software/repository/github/dpalmasan/TRUNAJOD2.0",
+	"content": "An easy-to-use library to extract indices from texts."
 	},
-	"github/ccsosa/GOCompare": {
-	"id": "github/ccsosa/GOCompare",
-	"title": "github/ccsosa/GOCompare",
-	"url": " https://rseng.github.io/software/repository/github/ccsosa/GOCompare",
-	"content": "This is an R package designed to analyze functional enrichment results between two species (A list of genes and their orthologues)"
+	"github/pni-lab/mlconfound": {
+	"id": "github/pni-lab/mlconfound",
+	"title": "github/pni-lab/mlconfound",
+	"url": " https://rseng.github.io/software/repository/github/pni-lab/mlconfound",
+	"content": "Tools for analyzing and quantifying effects of counfounder variables on machine learning model predictions."
 	},
-	"github/evolbioinfo/bdpn": {
-	"id": "github/evolbioinfo/bdpn",
-	"title": "github/evolbioinfo/bdpn",
-	"url": " https://rseng.github.io/software/repository/github/evolbioinfo/bdpn",
-	"content": "Birth-death epidemiological parameter estimator accounting for partner notification"
+	"github/morisUtokyo/uTR": {
+	"id": "github/morisUtokyo/uTR",
+	"title": "github/morisUtokyo/uTR",
+	"url": " https://rseng.github.io/software/repository/github/morisUtokyo/uTR",
+	"content": "Detect key Units in mosaic Tandem Repeats from representative reads from the same locus "
 	},
-	"github/evolbioinfo/treesimulator": {
-	"id": "github/evolbioinfo/treesimulator",
-	"title": "github/evolbioinfo/treesimulator",
-	"url": " https://rseng.github.io/software/repository/github/evolbioinfo/treesimulator",
+	"github/OwenWard/ppdiag": {
+	"id": "github/OwenWard/ppdiag",
+	"title": "github/OwenWard/ppdiag",
+	"url": " https://rseng.github.io/software/repository/github/OwenWard/ppdiag",
 	"content": "None"
 	},
-	"github/evolbioinfo/bdei": {
-	"id": "github/evolbioinfo/bdei",
-	"title": "github/evolbioinfo/bdei",
-	"url": " https://rseng.github.io/software/repository/github/evolbioinfo/bdei",
-	"content": "Birth-Death Exposed-Infectious (BDEI) model parameter inference from phylogenetic trees"
+	"github/anwarbio/bioassays": {
+	"id": "github/anwarbio/bioassays",
+	"title": "github/anwarbio/bioassays",
+	"url": " https://rseng.github.io/software/repository/github/anwarbio/bioassays",
+	"content": "None"
 	},
-	"github/NERC-CEH/RMAVIS": {
-	"id": "github/NERC-CEH/RMAVIS",
-	"title": "github/NERC-CEH/RMAVIS",
-	"url": " https://rseng.github.io/software/repository/github/NERC-CEH/RMAVIS",
-	"content": "A R Shiny application for the assignment of vegetation survey plot data to GB NVC communities with additional exploratory analyses."
+	"github/aamedinburgh/igmtransmission": {
+	"id": "github/aamedinburgh/igmtransmission",
+	"title": "github/aamedinburgh/igmtransmission",
+	"url": " https://rseng.github.io/software/repository/github/aamedinburgh/igmtransmission",
+	"content": "Automatically exported from code.google.com/p/igmtransmission"
 	},
-	"github/mathworks/Simscape-Medical-Ventilator": {
-	"id": "github/mathworks/Simscape-Medical-Ventilator",
-	"title": "github/mathworks/Simscape-Medical-Ventilator",
-	"url": " https://rseng.github.io/software/repository/github/mathworks/Simscape-Medical-Ventilator",
-	"content": "Positive-pressure medical ventilator system using Simscape™"
+	"github/tramarobin/fctSPM": {
+	"id": "github/tramarobin/fctSPM",
+	"title": "github/tramarobin/fctSPM",
+	"url": " https://rseng.github.io/software/repository/github/tramarobin/fctSPM",
+	"content": "Using spm1d package (v.0.4.3), compute anova and post-hoc tests from anova1 to anova3rm, with a non-parametric approach (permutation tests)"
 	},
-	"github/silx-kit/pyFAI": {
-	"id": "github/silx-kit/pyFAI",
-	"title": "github/silx-kit/pyFAI",
-	"url": " https://rseng.github.io/software/repository/github/silx-kit/pyFAI",
-	"content": "Fast Azimuthal Integration in Python"
+	"github/dylancromer/maszcal": {
+	"id": "github/dylancromer/maszcal",
+	"title": "github/dylancromer/maszcal",
+	"url": " https://rseng.github.io/software/repository/github/dylancromer/maszcal",
+	"content": "Mass calibrations for thermal-SZ clusters"
 	},
-	"github/tingyuansen/The_Payne": {
-	"id": "github/tingyuansen/The_Payne",
-	"title": "github/tingyuansen/The_Payne",
-	"url": " https://rseng.github.io/software/repository/github/tingyuansen/The_Payne",
+	"github/dylancromer/ostrich": {
+	"id": "github/dylancromer/ostrich",
+	"title": "github/dylancromer/ostrich",
+	"url": " https://rseng.github.io/software/repository/github/dylancromer/ostrich",
 	"content": "None"
 	},
-	"github/pcingola/SnpEff": {
-	"id": "github/pcingola/SnpEff",
-	"title": "github/pcingola/SnpEff",
-	"url": " https://rseng.github.io/software/repository/github/pcingola/SnpEff",
-	"content": "genetic variant annotation and effect prediction toolbox - tool"
+	"github/ShubhadeepSadhukhan1993/fastSF": {
+	"id": "github/ShubhadeepSadhukhan1993/fastSF",
+	"title": "github/ShubhadeepSadhukhan1993/fastSF",
+	"url": " https://rseng.github.io/software/repository/github/ShubhadeepSadhukhan1993/fastSF",
+	"content": "A hybrid parallel C++ code to compute structure function of different order"
 	},
-	"github/tupui/scipy": {
-	"id": "github/tupui/scipy",
-	"title": "github/tupui/scipy",
-	"url": " https://rseng.github.io/software/repository/github/tupui/scipy",
-	"content": "Scipy library main repository"
+	"github/Beryl-Jingxin/PyExoCross": {
+	"id": "github/Beryl-Jingxin/PyExoCross",
+	"title": "github/Beryl-Jingxin/PyExoCross",
+	"url": " https://rseng.github.io/software/repository/github/Beryl-Jingxin/PyExoCross",
+	"content": "None"
 	},
-	"github/JASHunt/Snapdragons": {
-	"id": "github/JASHunt/Snapdragons",
-	"title": "github/JASHunt/Snapdragons",
-	"url": " https://rseng.github.io/software/repository/github/JASHunt/Snapdragons",
-	"content": "Snapdragons population synthesis &amp; mock survey data generation code "
+	"github/maxbernyk/lightcone": {
+	"id": "github/maxbernyk/lightcone",
+	"title": "github/maxbernyk/lightcone",
+	"url": " https://rseng.github.io/software/repository/github/maxbernyk/lightcone",
+	"content": "light-cone generating script"
 	},
-	"github/thegenemyers/DALIGNER": {
-	"id": "github/thegenemyers/DALIGNER",
-	"title": "github/thegenemyers/DALIGNER",
-	"url": " https://rseng.github.io/software/repository/github/thegenemyers/DALIGNER",
-	"content": "finds all significant local alignments between reads."
+	"github/ecological-cities/home2park": {
+	"id": "github/ecological-cities/home2park",
+	"title": "github/ecological-cities/home2park",
+	"url": " https://rseng.github.io/software/repository/github/ecological-cities/home2park",
+	"content": "home2park: Assess the spatial provision of urban parks"
 	},
-	"github/thegenemyers/DAMAPPER": {
-	"id": "github/thegenemyers/DAMAPPER",
-	"title": "github/thegenemyers/DAMAPPER",
-	"url": " https://rseng.github.io/software/repository/github/thegenemyers/DAMAPPER",
-	"content": "Long read to reference genome mapping tool"
+	"github/mlujnie/simple": {
+	"id": "github/mlujnie/simple",
+	"title": "github/mlujnie/simple",
+	"url": " https://rseng.github.io/software/repository/github/mlujnie/simple",
+	"content": "Simple Intensity Map Producer for Line Emission (public code)"
 	},
-	"github/thegenemyers/DAZZ_DB": {
-	"id": "github/thegenemyers/DAZZ_DB",
-	"title": "github/thegenemyers/DAZZ_DB",
-	"url": " https://rseng.github.io/software/repository/github/thegenemyers/DAZZ_DB",
-	"content": "The Dazzler Data Base"
+	"github/ElsevierSoftwareX/SOFTX_2020_119": {
+	"id": "github/ElsevierSoftwareX/SOFTX_2020_119",
+	"title": "github/ElsevierSoftwareX/SOFTX_2020_119",
+	"url": " https://rseng.github.io/software/repository/github/ElsevierSoftwareX/SOFTX_2020_119",
+	"content": "Python/Octave wrapper generation for LALSuite"
 	},
-	"github/thegenemyers/DEXTRACTOR": {
-	"id": "github/thegenemyers/DEXTRACTOR",
-	"title": "github/thegenemyers/DEXTRACTOR",
-	"url": " https://rseng.github.io/software/repository/github/thegenemyers/DEXTRACTOR",
-	"content": "bax file decoder and data compressor."
+	"github/landlab/landlab": {
+	"id": "github/landlab/landlab",
+	"title": "github/landlab/landlab",
+	"url": " https://rseng.github.io/software/repository/github/landlab/landlab",
+	"content": "Landlab codebase, wiki, and tests"
 	},
-	"github/DTsuna/CHIPS": {
-	"id": "github/DTsuna/CHIPS",
-	"title": "github/DTsuna/CHIPS",
-	"url": " https://rseng.github.io/software/repository/github/DTsuna/CHIPS",
-	"content": "Open source code to unveil the Complete History of Interaction-Powered Supernovae"
+	"github/genostats/LowKi": {
+	"id": "github/genostats/LowKi",
+	"title": "github/genostats/LowKi",
+	"url": " https://rseng.github.io/software/repository/github/genostats/LowKi",
+	"content": "None"
 	},
-	"github/DTsuna/binary_precursor": {
-	"id": "github/DTsuna/binary_precursor",
-	"title": "github/DTsuna/binary_precursor",
-	"url": " https://rseng.github.io/software/repository/github/DTsuna/binary_precursor",
-	"content": "Light curve model of supernova precursors powered by compact object companions"
+	"github/JuliaHCI/ADI.jl": {
+	"id": "github/JuliaHCI/ADI.jl",
+	"title": "github/JuliaHCI/ADI.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaHCI/ADI.jl",
+	"content": "Algorithms for performing angular differential imaging (ADI)"
 	},
-	"github/spokenlanguage/platalea": {
-	"id": "github/spokenlanguage/platalea",
-	"title": "github/spokenlanguage/platalea",
-	"url": " https://rseng.github.io/software/repository/github/spokenlanguage/platalea",
-	"content": "Library for training visually-grounded models of spoken language understanding."
+	"github/mrbell/fsclean": {
+	"id": "github/mrbell/fsclean",
+	"title": "github/mrbell/fsclean",
+	"url": " https://rseng.github.io/software/repository/github/mrbell/fsclean",
+	"content": "A Faraday synthesis application that performs 3D CLEAN deconvolution of multi-frequency, polarized radio interferometric data following Bell &amp; Enßlin (2012)."
 	},
-	"github/chapmanb/bcbb": {
-	"id": "github/chapmanb/bcbb",
-	"title": "github/chapmanb/bcbb",
-	"url": " https://rseng.github.io/software/repository/github/chapmanb/bcbb",
-	"content": "Incubator for useful bioinformatics code, primarily in Python and R"
+	"github/Washington-University/CiftiLib": {
+	"id": "github/Washington-University/CiftiLib",
+	"title": "github/Washington-University/CiftiLib",
+	"url": " https://rseng.github.io/software/repository/github/Washington-University/CiftiLib",
+	"content": "C++ Library for reading and writing CIFTI-2 and CIFTI-1 files"
 	},
-	"github/chapmanb/bcbio.variation": {
-	"id": "github/chapmanb/bcbio.variation",
-	"title": "github/chapmanb/bcbio.variation",
-	"url": " https://rseng.github.io/software/repository/github/chapmanb/bcbio.variation",
-	"content": "Toolkit to analyze genomic variation data, built on the GATK with Clojure"
+	"github/scikit-hep/iminuit": {
+	"id": "github/scikit-hep/iminuit",
+	"title": "github/scikit-hep/iminuit",
+	"url": " https://rseng.github.io/software/repository/github/scikit-hep/iminuit",
+	"content": "Jupyter-friendly Python interface for C++ MINUIT2"
 	},
-	"github/chapmanb/bcbio.prioritize": {
-	"id": "github/chapmanb/bcbio.prioritize",
-	"title": "github/chapmanb/bcbio.prioritize",
-	"url": " https://rseng.github.io/software/repository/github/chapmanb/bcbio.prioritize",
-	"content": "Prioritize small variants, structural variants and coverage based on biological inputs"
+	"github/scikit-hep/pyhf": {
+	"id": "github/scikit-hep/pyhf",
+	"title": "github/scikit-hep/pyhf",
+	"url": " https://rseng.github.io/software/repository/github/scikit-hep/pyhf",
+	"content": "pure-Python HistFactory implementation with tensors and autodiff"
 	},
-	"github/ECP-WarpX/WarpX": {
-	"id": "github/ECP-WarpX/WarpX",
-	"title": "github/ECP-WarpX/WarpX",
-	"url": " https://rseng.github.io/software/repository/github/ECP-WarpX/WarpX",
-	"content": "WarpX is an advanced, time-based electromagnetic &amp; electrostatic Particle-In-Cell code."
+	"github/skyfielders/python-skyfield": {
+	"id": "github/skyfielders/python-skyfield",
+	"title": "github/skyfielders/python-skyfield",
+	"url": " https://rseng.github.io/software/repository/github/skyfielders/python-skyfield",
+	"content": "Elegant astronomy for Python"
 	},
-	"github/scikit-tda/DREiMac": {
-	"id": "github/scikit-tda/DREiMac",
-	"title": "github/scikit-tda/DREiMac",
-	"url": " https://rseng.github.io/software/repository/github/scikit-tda/DREiMac",
-	"content": "Dimensionality Reduction with Eilenberg-MacLane Coordinates"
+	"github/BioDepot/biodepot-launcher": {
+	"id": "github/BioDepot/biodepot-launcher",
+	"title": "github/BioDepot/biodepot-launcher",
+	"url": " https://rseng.github.io/software/repository/github/BioDepot/biodepot-launcher",
+	"content": "None"
 	},
-	"github/Valdes-Tresanco-MS/NbThermo": {
-	"id": "github/Valdes-Tresanco-MS/NbThermo",
-	"title": "github/Valdes-Tresanco-MS/NbThermo",
-	"url": " https://rseng.github.io/software/repository/github/Valdes-Tresanco-MS/NbThermo",
-	"content": "NbThermo is a database of nanobodies melting temperature"
+	"github/csb5/lofreq": {
+	"id": "github/csb5/lofreq",
+	"title": "github/csb5/lofreq",
+	"url": " https://rseng.github.io/software/repository/github/csb5/lofreq",
+	"content": "LoFreq Star: Sensitive variant calling from sequencing data"
 	},
-	"github/ramadatta/CPgeneProfiler": {
-	"id": "github/ramadatta/CPgeneProfiler",
-	"title": "github/ramadatta/CPgeneProfiler",
-	"url": " https://rseng.github.io/software/repository/github/ramadatta/CPgeneProfiler",
-	"content": "CPgeneProfiler R package repository"
+	"github/eelregit/pmwd": {
+	"id": "github/eelregit/pmwd",
+	"title": "github/eelregit/pmwd",
+	"url": " https://rseng.github.io/software/repository/github/eelregit/pmwd",
+	"content": "Differentiable Cosmological Forward Model"
 	},
-	"github/khyox/recentrifuge": {
-	"id": "github/khyox/recentrifuge",
-	"title": "github/khyox/recentrifuge",
-	"url": " https://rseng.github.io/software/repository/github/khyox/recentrifuge",
-	"content": "Recentrifuge: robust comparative analysis and contamination removal for metagenomics"
+	"github/eelregit/mcfit": {
+	"id": "github/eelregit/mcfit",
+	"title": "github/eelregit/mcfit",
+	"url": " https://rseng.github.io/software/repository/github/eelregit/mcfit",
+	"content": "multiplicatively convolutional fast integral transforms"
 	},
-	"github/nathanaelbosch/ProbNumDiffEq.jl": {
-	"id": "github/nathanaelbosch/ProbNumDiffEq.jl",
-	"title": "github/nathanaelbosch/ProbNumDiffEq.jl",
-	"url": " https://rseng.github.io/software/repository/github/nathanaelbosch/ProbNumDiffEq.jl",
-	"content": "Probabilistic Numerical Differential Equation solvers via Bayesian filtering and smoothing"
+	"github/eelregit/covdisc": {
+	"id": "github/eelregit/covdisc",
+	"title": "github/eelregit/covdisc",
+	"url": " https://rseng.github.io/software/repository/github/eelregit/covdisc",
+	"content": "Disconnected covariance of 2-point functions in large-scale structure of the Universe"
 	},
-	"github/qianlivan/RPPPS": {
-	"id": "github/qianlivan/RPPPS",
-	"title": "github/qianlivan/RPPPS",
-	"url": " https://rseng.github.io/software/repository/github/qianlivan/RPPPS",
-	"content": "None"
+	"github/tolkit/telomeric-identifier": {
+	"id": "github/tolkit/telomeric-identifier",
+	"title": "github/tolkit/telomeric-identifier",
+	"url": " https://rseng.github.io/software/repository/github/tolkit/telomeric-identifier",
+	"content": "Identify and find telomeres, or telomeric repeats in a genome."
 	},
-	"github/ZhenjiangFan/DAG-deepVASE": {
-	"id": "github/ZhenjiangFan/DAG-deepVASE",
-	"title": "github/ZhenjiangFan/DAG-deepVASE",
-	"url": " https://rseng.github.io/software/repository/github/ZhenjiangFan/DAG-deepVASE",
-	"content": "None"
+	"github/SWAT-Sheffield/SAC": {
+	"id": "github/SWAT-Sheffield/SAC",
+	"title": "github/SWAT-Sheffield/SAC",
+	"url": " https://rseng.github.io/software/repository/github/SWAT-Sheffield/SAC",
+	"content": "The Sheffield Advanced Code"
 	},
-	"github/djsutherland/py-sdm": {
-	"id": "github/djsutherland/py-sdm",
-	"title": "github/djsutherland/py-sdm",
-	"url": " https://rseng.github.io/software/repository/github/djsutherland/py-sdm",
-	"content": "Python implementation of nonparametric nearest-neighbor-based estimators for divergences between distributions."
+	"github/JiangFangzhou/SIDM": {
+	"id": "github/JiangFangzhou/SIDM",
+	"title": "github/JiangFangzhou/SIDM",
+	"url": " https://rseng.github.io/software/repository/github/JiangFangzhou/SIDM",
+	"content": "analytical model for the density profiles of self-interacting dark-matter halos with inhabitant galaxies"
 	},
-	"github/zooniverse/starpy": {
-	"id": "github/zooniverse/starpy",
-	"title": "github/zooniverse/starpy",
-	"url": " https://rseng.github.io/software/repository/github/zooniverse/starpy",
-	"content": "Code to determine sfh parameters of galaxy populations with emcee"
+	"github/openmsi/openmsistream": {
+	"id": "github/openmsi/openmsistream",
+	"title": "github/openmsi/openmsistream",
+	"url": " https://rseng.github.io/software/repository/github/openmsi/openmsistream",
+	"content": "Materials data streaming applications, written in Python using Apache Kafka, with a focus on deployment in laboratory environments"
 	},
-	"github/domenico-simone/rmlst_api": {
-	"id": "github/domenico-simone/rmlst_api",
-	"title": "github/domenico-simone/rmlst_api",
-	"url": " https://rseng.github.io/software/repository/github/domenico-simone/rmlst_api",
-	"content": "Run rmlst API through python script"
+	"github/JuBiotech/peak-performance": {
+	"id": "github/JuBiotech/peak-performance",
+	"title": "github/JuBiotech/peak-performance",
+	"url": " https://rseng.github.io/software/repository/github/JuBiotech/peak-performance",
+	"content": "A Python toolbox for Bayesian inference of peak areas."
 	},
-	"github/Cristianetaniguti/Reads2Map": {
-	"id": "github/Cristianetaniguti/Reads2Map",
-	"title": "github/Cristianetaniguti/Reads2Map",
-	"url": " https://rseng.github.io/software/repository/github/Cristianetaniguti/Reads2Map",
-	"content": "WDL workflows to build genetic maps from sequencing reads"
+	"github/mperezcarrasco/AnomalyALeRCE": {
+	"id": "github/mperezcarrasco/AnomalyALeRCE",
+	"title": "github/mperezcarrasco/AnomalyALeRCE",
+	"url": " https://rseng.github.io/software/repository/github/mperezcarrasco/AnomalyALeRCE",
+	"content": "Anomaly Detector for ALeRCE broker 🤖"
 	},
-	"github/pratheesh3780/grapesAgri1": {
-	"id": "github/pratheesh3780/grapesAgri1",
-	"title": "github/pratheesh3780/grapesAgri1",
-	"url": " https://rseng.github.io/software/repository/github/pratheesh3780/grapesAgri1",
-	"content": "Collection of shiny apps for Agricultural research Data Analysis. Allows user to have graphical user interface to perform analysis of Agricultural experimental data. On using the functions in this package a Graphical User Interface will pop up. Apps Works by simple upload of files in CSV format."
+	"github/cdalvaro/machine-learning-master-thesis": {
+	"id": "github/cdalvaro/machine-learning-master-thesis",
+	"title": "github/cdalvaro/machine-learning-master-thesis",
+	"url": " https://rseng.github.io/software/repository/github/cdalvaro/machine-learning-master-thesis",
+	"content": "✨🛰 Machine Learning Tools for Open Cluster Characterization with Gaia DR2 Data"
 	},
-	"github/federicomarulli/CosmoBolognaLib": {
-	"id": "github/federicomarulli/CosmoBolognaLib",
-	"title": "github/federicomarulli/CosmoBolognaLib",
-	"url": " https://rseng.github.io/software/repository/github/federicomarulli/CosmoBolognaLib",
-	"content": "free software C++ libraries for cosmological calculations"
+	"github/RafiKueng/SpaghettiLens": {
+	"id": "github/RafiKueng/SpaghettiLens",
+	"title": "github/RafiKueng/SpaghettiLens",
+	"url": " https://rseng.github.io/software/repository/github/RafiKueng/SpaghettiLens",
+	"content": "Webbased Gravitational Lens Modelling Tool (client and server side)"
 	},
-	"github/PieterjanRobbe/GaussianRandomFields.jl": {
-	"id": "github/PieterjanRobbe/GaussianRandomFields.jl",
-	"title": "github/PieterjanRobbe/GaussianRandomFields.jl",
-	"url": " https://rseng.github.io/software/repository/github/PieterjanRobbe/GaussianRandomFields.jl",
-	"content": "A package for Gaussian random field generation in Julia"
+	"github/h3abionet/genesis2": {
+	"id": "github/h3abionet/genesis2",
+	"title": "github/h3abionet/genesis2",
+	"url": " https://rseng.github.io/software/repository/github/h3abionet/genesis2",
+	"content": "Implementation of the Genesis 2 tool "
 	},
-	"github/juzikong/photGalIMF": {
-	"id": "github/juzikong/photGalIMF",
-	"title": "github/juzikong/photGalIMF",
-	"url": " https://rseng.github.io/software/repository/github/juzikong/photGalIMF",
-	"content": "supplementary repository of the GalIMF galaxy chemical evolution code to calculate photometric luminosity of simulated galaxies"
+	"github/klho/FLAM": {
+	"id": "github/klho/FLAM",
+	"title": "github/klho/FLAM",
+	"url": " https://rseng.github.io/software/repository/github/klho/FLAM",
+	"content": "Fast linear algebra in MATLAB"
 	},
-	"github/ruizengalways/FOD-Net": {
-	"id": "github/ruizengalways/FOD-Net",
-	"title": "github/ruizengalways/FOD-Net",
-	"url": " https://rseng.github.io/software/repository/github/ruizengalways/FOD-Net",
-	"content": "FOD-Net: A Deep Learning Method for Fiber Orientation Distribution Angular Super Resolution"
+	"github/ketch/RK-Opt": {
+	"id": "github/ketch/RK-Opt",
+	"title": "github/ketch/RK-Opt",
+	"url": " https://rseng.github.io/software/repository/github/ketch/RK-Opt",
+	"content": "A package for the design of numerical ODE solvers"
 	},
-	"github/bokulich-lab/q2-fondue": {
-	"id": "github/bokulich-lab/q2-fondue",
-	"title": "github/bokulich-lab/q2-fondue",
-	"url": " https://rseng.github.io/software/repository/github/bokulich-lab/q2-fondue",
-	"content": "Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere"
+	"github/ketch/nodepy": {
+	"id": "github/ketch/nodepy",
+	"title": "github/ketch/nodepy",
+	"url": " https://rseng.github.io/software/repository/github/ketch/nodepy",
+	"content": "Analysis of initial value ODE solvers"
 	},
-	"github/bricoletc/delfies": {
-	"id": "github/bricoletc/delfies",
-	"title": "github/bricoletc/delfies",
-	"url": " https://rseng.github.io/software/repository/github/bricoletc/delfies",
-	"content": "Querying genomes for evidence of Programmed DNA Elimination"
+	"github/Pranab-JD/LeXInt": {
+	"id": "github/Pranab-JD/LeXInt",
+	"title": "github/Pranab-JD/LeXInt",
+	"url": " https://rseng.github.io/software/repository/github/Pranab-JD/LeXInt",
+	"content": "Leja Exponential Integrators"
 	},
-	"github/andresmegias/radex-python": {
-	"id": "github/andresmegias/radex-python",
-	"title": "github/andresmegias/radex-python",
-	"url": " https://rseng.github.io/software/repository/github/andresmegias/radex-python",
-	"content": "Python interface for using the software RADEX"
+	"github/Pranab-JD/iPIC3D-CPU-SPACE-CoE": {
+	"id": "github/Pranab-JD/iPIC3D-CPU-SPACE-CoE",
+	"title": "github/Pranab-JD/iPIC3D-CPU-SPACE-CoE",
+	"url": " https://rseng.github.io/software/repository/github/Pranab-JD/iPIC3D-CPU-SPACE-CoE",
+	"content": "the CPU version of iPIC3D supporting MPI and OpenMP"
 	},
-	"github/andresmegias/gildas-class-python": {
-	"id": "github/andresmegias/gildas-class-python",
-	"title": "github/andresmegias/gildas-class-python",
-	"url": " https://rseng.github.io/software/repository/github/andresmegias/gildas-class-python",
-	"content": "Python pipeline to use GILDAS-CLASS in an automated way"
+	"github/LINNAE-project/SFB-Annotator": {
+	"id": "github/LINNAE-project/SFB-Annotator",
+	"title": "github/LINNAE-project/SFB-Annotator",
+	"url": " https://rseng.github.io/software/repository/github/LINNAE-project/SFB-Annotator",
+	"content": "This web app is intended for demo purposes only!"
 	},
-	"github/andresmegias/richvalues": {
-	"id": "github/andresmegias/richvalues",
-	"title": "github/andresmegias/richvalues",
-	"url": " https://rseng.github.io/software/repository/github/andresmegias/richvalues",
-	"content": "Python library for dealing with uncertainties and upper/lower limits"
+	"github/mirapy-org/mirapy": {
+	"id": "github/mirapy-org/mirapy",
+	"title": "github/mirapy-org/mirapy",
+	"url": " https://rseng.github.io/software/repository/github/mirapy-org/mirapy",
+	"content": "MiraPy: A Python package for Deep Learning in Astronomy"
 	},
-	"github/dmentipl/plonk": {
-	"id": "github/dmentipl/plonk",
-	"title": "github/dmentipl/plonk",
-	"url": " https://rseng.github.io/software/repository/github/dmentipl/plonk",
-	"content": "Smoothed particle hydrodynamics analysis and visualization with Python."
+	"github/freebayes/freebayes": {
+	"id": "github/freebayes/freebayes",
+	"title": "github/freebayes/freebayes",
+	"url": " https://rseng.github.io/software/repository/github/freebayes/freebayes",
+	"content": "Bayesian haplotype-based genetic polymorphism discovery and genotyping."
 	},
-	"github/varlociraptor/varlociraptorhub.io": {
-	"id": "github/varlociraptor/varlociraptorhub.io",
-	"title": "github/varlociraptor/varlociraptorhub.io",
-	"url": " https://rseng.github.io/software/repository/github/varlociraptor/varlociraptorhub.io",
-	"content": "flexible, arbitrary-scenario, uncertainty-aware variant calling with parameter free filtration via FDR control."
+	"github/AlphonsG/Rainbow-Optical-Flow-For-ALI": {
+	"id": "github/AlphonsG/Rainbow-Optical-Flow-For-ALI",
+	"title": "github/AlphonsG/Rainbow-Optical-Flow-For-ALI",
+	"url": " https://rseng.github.io/software/repository/github/AlphonsG/Rainbow-Optical-Flow-For-ALI",
+	"content": "Repository for software detailed in &#39;Rainbow: Automated Air-Liquid Interface Cell Culture Analysis Using Deep Optical Flow&#39; software paper. See Readme for more details."
 	},
-	"github/buschlab/fhirspark": {
-	"id": "github/buschlab/fhirspark",
-	"title": "github/buschlab/fhirspark",
-	"url": " https://rseng.github.io/software/repository/github/buschlab/fhirspark",
-	"content": "None"
+	"github/beckrob/Photo-z-SQL": {
+	"id": "github/beckrob/Photo-z-SQL",
+	"title": "github/beckrob/Photo-z-SQL",
+	"url": " https://rseng.github.io/software/repository/github/beckrob/Photo-z-SQL",
+	"content": "C# template-based photometric redshift estimation framework"
 	},
-	"github/kuadrat/data_slicer": {
-	"id": "github/kuadrat/data_slicer",
-	"title": "github/kuadrat/data_slicer",
-	"url": " https://rseng.github.io/software/repository/github/kuadrat/data_slicer",
-	"content": "None"
+	"github/argiopetech/base": {
+	"id": "github/argiopetech/base",
+	"title": "github/argiopetech/base",
+	"url": " https://rseng.github.io/software/repository/github/argiopetech/base",
+	"content": "Bayesian Analysis for Stellar Evolution"
 	},
-	"github/mathjax/MathJax": {
-	"id": "github/mathjax/MathJax",
-	"title": "github/mathjax/MathJax",
-	"url": " https://rseng.github.io/software/repository/github/mathjax/MathJax",
-	"content": "Beautiful math in all browsers"
+	"github/3d-pli/fastpli": {
+	"id": "github/3d-pli/fastpli",
+	"title": "github/3d-pli/fastpli",
+	"url": " https://rseng.github.io/software/repository/github/3d-pli/fastpli",
+	"content": "Fiber Architecture Simulation Toolbox for 3D Polarized Light Imaging"
 	},
-	"github/marcelauliano/MitoHiFi": {
-	"id": "github/marcelauliano/MitoHiFi",
-	"title": "github/marcelauliano/MitoHiFi",
-	"url": " https://rseng.github.io/software/repository/github/marcelauliano/MitoHiFi",
-	"content": "Find, circularise and annotate mitogenome from PacBio assemblies"
+	"github/astromer-science/main-code": {
+	"id": "github/astromer-science/main-code",
+	"title": "github/astromer-science/main-code",
+	"url": " https://rseng.github.io/software/repository/github/astromer-science/main-code",
+	"content": "Latest stable implemention of ASTROMER "
 	},
-	"github/nuclear-multimessenger-astronomy/nmma": {
-	"id": "github/nuclear-multimessenger-astronomy/nmma",
-	"title": "github/nuclear-multimessenger-astronomy/nmma",
-	"url": " https://rseng.github.io/software/repository/github/nuclear-multimessenger-astronomy/nmma",
-	"content": "A pythonic library for probing nuclear physics and cosmology with multimessenger analysis"
+	"github/Multiversario/satcand": {
+	"id": "github/Multiversario/satcand",
+	"title": "github/Multiversario/satcand",
+	"url": " https://rseng.github.io/software/repository/github/Multiversario/satcand",
+	"content": "Tools to apply theoretical constraints of orbital stability and tidal migration to KOI exomoon candidates. "
 	},
-	"github/VU-BEAM-Lab/GENRE": {
-	"id": "github/VU-BEAM-Lab/GENRE",
-	"title": "github/VU-BEAM-Lab/GENRE",
-	"url": " https://rseng.github.io/software/repository/github/VU-BEAM-Lab/GENRE",
+	"github/veg/hivtrace": {
+	"id": "github/veg/hivtrace",
+	"title": "github/veg/hivtrace",
+	"url": " https://rseng.github.io/software/repository/github/veg/hivtrace",
 	"content": "None"
 	},
-	"github/joboog/r2ogs6": {
-	"id": "github/joboog/r2ogs6",
-	"title": "github/joboog/r2ogs6",
-	"url": " https://rseng.github.io/software/repository/github/joboog/r2ogs6",
-	"content": "R-API to the multiphysics simulator OpenGeoSys 6.       THIS IS A MIRROR OF: https://gitlab.opengeosys.org/ogs/tools/r2ogs6"
+	"github/veg/tn93": {
+	"id": "github/veg/tn93",
+	"title": "github/veg/tn93",
+	"url": " https://rseng.github.io/software/repository/github/veg/tn93",
+	"content": "TN93 fast distance calculator"
 	},
-	"github/DamynChipman/EllipticForest": {
-	"id": "github/DamynChipman/EllipticForest",
-	"title": "github/DamynChipman/EllipticForest",
-	"url": " https://rseng.github.io/software/repository/github/DamynChipman/EllipticForest",
-	"content": "A Direct Solver for Elliptic Partial Differential Equations on a Forest of Quadtree Meshes"
+	"github/Zstone19/pypetal": {
+	"id": "github/Zstone19/pypetal",
+	"title": "github/Zstone19/pypetal",
+	"url": " https://rseng.github.io/software/repository/github/Zstone19/pypetal",
+	"content": "A pipeline for estimating AGN time lags"
 	},
-	"github/benjaminbolling/RSW": {
-	"id": "github/benjaminbolling/RSW",
-	"title": "github/benjaminbolling/RSW",
-	"url": " https://rseng.github.io/software/repository/github/benjaminbolling/RSW",
-	"content": "A Computational Approach to Generate Multi-Shift Rotational Workforce Schedules."
+	"github/sieunhanbom04/support-exploration-matrix-factorization": {
+	"id": "github/sieunhanbom04/support-exploration-matrix-factorization",
+	"title": "github/sieunhanbom04/support-exploration-matrix-factorization",
+	"url": " https://rseng.github.io/software/repository/github/sieunhanbom04/support-exploration-matrix-factorization",
+	"content": "Code for the paper &#34;Structured support exploration for multi-layer sparse matrix factorization&#34; - ICASSP 2020"
+	},
+	"github/dstndstn/tractor": {
+	"id": "github/dstndstn/tractor",
+	"title": "github/dstndstn/tractor",
+	"url": " https://rseng.github.io/software/repository/github/dstndstn/tractor",
+	"content": "The Tractor: measuring astronomical sources via probabilistic inference"
+	},
+	"github/dstndstn/astrometry.net": {
+	"id": "github/dstndstn/astrometry.net",
+	"title": "github/dstndstn/astrometry.net",
+	"url": " https://rseng.github.io/software/repository/github/dstndstn/astrometry.net",
+	"content": "Astrometry.net -- automatic recognition of astronomical images"
 	},
-	"github/benjaminbolling/DynaGUI": {
-	"id": "github/benjaminbolling/DynaGUI",
-	"title": "github/benjaminbolling/DynaGUI",
-	"url": " https://rseng.github.io/software/repository/github/benjaminbolling/DynaGUI",
-	"content": "A Dynamic Graphical User Interface package, which gives users a method to construct temporary, permanent and/or a set of GUI:s for users in a simple and fast manner combined with diagnostics tools (with advance 1D and 2D plotting methods)."
+	"github/pfaucon/PBSIM-PacBio-Simulator": {
+	"id": "github/pfaucon/PBSIM-PacBio-Simulator",
+	"title": "github/pfaucon/PBSIM-PacBio-Simulator",
+	"url": " https://rseng.github.io/software/repository/github/pfaucon/PBSIM-PacBio-Simulator",
+	"content": "This is an updated mirror of the original PacBio Read Simulator"
 	},
-	"github/JLSteenwyk/ggpubfigs": {
-	"id": "github/JLSteenwyk/ggpubfigs",
-	"title": "github/JLSteenwyk/ggpubfigs",
-	"url": " https://rseng.github.io/software/repository/github/JLSteenwyk/ggpubfigs",
-	"content": "colorblind friendly color palettes and ggplot2 graphic system extensions for publication-quality scientific figures"
+	"github/geopandas/geopandas": {
+	"id": "github/geopandas/geopandas",
+	"title": "github/geopandas/geopandas",
+	"url": " https://rseng.github.io/software/repository/github/geopandas/geopandas",
+	"content": "Python tools for geographic data"
 	},
-	"github/lazzati-astro/MCRaT": {
-	"id": "github/lazzati-astro/MCRaT",
-	"title": "github/lazzati-astro/MCRaT",
-	"url": " https://rseng.github.io/software/repository/github/lazzati-astro/MCRaT",
-	"content": "Monte Carlo Radiation Transfer Through an Astrophysical Jet"
+	"github/reggiebernardo/PTAfast": {
+	"id": "github/reggiebernardo/PTAfast",
+	"title": "github/reggiebernardo/PTAfast",
+	"url": " https://rseng.github.io/software/repository/github/reggiebernardo/PTAfast",
+	"content": "Fast code for PTA correlations from SGWB"
 	},
-	"github/choosehappy/HoverFast": {
-	"id": "github/choosehappy/HoverFast",
-	"title": "github/choosehappy/HoverFast",
-	"url": " https://rseng.github.io/software/repository/github/choosehappy/HoverFast",
-	"content": "Blazing fast nuclei segmentation for brightfield Whole Slide Images"
+	"github/ExeClim/Isca": {
+	"id": "github/ExeClim/Isca",
+	"title": "github/ExeClim/Isca",
+	"url": " https://rseng.github.io/software/repository/github/ExeClim/Isca",
+	"content": "Idealized GCM from the University of Exeter"
 	},
-	"github/tramarobin/fctSPM": {
-	"id": "github/tramarobin/fctSPM",
-	"title": "github/tramarobin/fctSPM",
-	"url": " https://rseng.github.io/software/repository/github/tramarobin/fctSPM",
-	"content": "Using spm1d package (v.0.4.3), compute anova and post-hoc tests from anova1 to anova3rm, with a non-parametric approach (permutation tests)"
+	"github/vembrane/vembrane": {
+	"id": "github/vembrane/vembrane",
+	"title": "github/vembrane/vembrane",
+	"url": " https://rseng.github.io/software/repository/github/vembrane/vembrane",
+	"content": "vembrane filters VCF records using python expressions"
 	},
-	"github/duffell/RT1D": {
-	"id": "github/duffell/RT1D",
-	"title": "github/duffell/RT1D",
-	"url": " https://rseng.github.io/software/repository/github/duffell/RT1D",
-	"content": "A 1D Model for Rayleigh-Taylor Instability"
+	"github/nlesc-dirac/sagecal": {
+	"id": "github/nlesc-dirac/sagecal",
+	"title": "github/nlesc-dirac/sagecal",
+	"url": " https://rseng.github.io/software/repository/github/nlesc-dirac/sagecal",
+	"content": "SAGECal is a very fast, memory efficient and GPU accelerated radio interferometric calibration program. It supports all source models including points, Gaussians and Shapelets. Distributed calibration using MPI and consensus optimization is enabled. Tools to build/restore sky models are included."
 	},
-	"github/duffell/Disco": {
-	"id": "github/duffell/Disco",
-	"title": "github/duffell/Disco",
-	"url": " https://rseng.github.io/software/repository/github/duffell/Disco",
-	"content": "A moving-mesh magnetohydrodynamics code designed for the study of astrophysical disks."
+	"github/BenWibking/quokka": {
+	"id": "github/BenWibking/quokka",
+	"title": "github/BenWibking/quokka",
+	"url": " https://rseng.github.io/software/repository/github/BenWibking/quokka",
+	"content": "Two-moment AMR radiation hydrodynamics on GPUs for astrophysics"
 	},
-	"github/pydemull/activAnalyzer": {
-	"id": "github/pydemull/activAnalyzer",
-	"title": "github/pydemull/activAnalyzer",
-	"url": " https://rseng.github.io/software/repository/github/pydemull/activAnalyzer",
-	"content": "None"
+	"github/tekpinar/correlationplus": {
+	"id": "github/tekpinar/correlationplus",
+	"title": "github/tekpinar/correlationplus",
+	"url": " https://rseng.github.io/software/repository/github/tekpinar/correlationplus",
+	"content": "A Python package to calculate, visualize and analyze dynamical correlations of proteins."
 	},
-	"github/valerio-marra/CalPriorSNIa": {
-	"id": "github/valerio-marra/CalPriorSNIa",
-	"title": "github/valerio-marra/CalPriorSNIa",
-	"url": " https://rseng.github.io/software/repository/github/valerio-marra/CalPriorSNIa",
-	"content": "Effective calibration prior on the absolute magnitude of Type Ia supernovae"
+	"github/skypyproject/skypy": {
+	"id": "github/skypyproject/skypy",
+	"title": "github/skypyproject/skypy",
+	"url": " https://rseng.github.io/software/repository/github/skypyproject/skypy",
+	"content": "SkyPy: A package for modelling the Universe."
 	},
-	"github/ogotoh/spaln": {
-	"id": "github/ogotoh/spaln",
-	"title": "github/ogotoh/spaln",
-	"url": " https://rseng.github.io/software/repository/github/ogotoh/spaln",
-	"content": "Genome mapping and spliced alignment of cDNA or amino acid sequences"
+	"github/stevertaylor/gw_pta_emulator": {
+	"id": "github/stevertaylor/gw_pta_emulator",
+	"title": "github/stevertaylor/gw_pta_emulator",
+	"url": " https://rseng.github.io/software/repository/github/stevertaylor/gw_pta_emulator",
+	"content": "A notebook and data associated with the paper Taylor, Simon, Sampson (2017)"
 	},
-	"github/simd-everywhere/simde": {
-	"id": "github/simd-everywhere/simde",
-	"title": "github/simd-everywhere/simde",
-	"url": " https://rseng.github.io/software/repository/github/simd-everywhere/simde",
-	"content": "Implementations of SIMD instruction sets for systems which don&#39;t natively support them."
+	"github/pengweixing/FACT": {
+	"id": "github/pengweixing/FACT",
+	"title": "github/pengweixing/FACT",
+	"url": " https://rseng.github.io/software/repository/github/pengweixing/FACT",
+	"content": "None"
 	},
-	"github/openvax/pyensembl": {
-	"id": "github/openvax/pyensembl",
-	"title": "github/openvax/pyensembl",
-	"url": " https://rseng.github.io/software/repository/github/openvax/pyensembl",
-	"content": "Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl "
+	"github/furrer-lab/abn": {
+	"id": "github/furrer-lab/abn",
+	"title": "github/furrer-lab/abn",
+	"url": " https://rseng.github.io/software/repository/github/furrer-lab/abn",
+	"content": "Bayesian network analysis in R"
 	},
-	"github/openvax/mhcflurry": {
-	"id": "github/openvax/mhcflurry",
-	"title": "github/openvax/mhcflurry",
-	"url": " https://rseng.github.io/software/repository/github/openvax/mhcflurry",
-	"content": "Peptide-MHC I binding affinity prediction"
+	"github/MonashSmartStructures/ospgrillage": {
+	"id": "github/MonashSmartStructures/ospgrillage",
+	"title": "github/MonashSmartStructures/ospgrillage",
+	"url": " https://rseng.github.io/software/repository/github/MonashSmartStructures/ospgrillage",
+	"content": "`ospgrillage` is a package that wraps `OpenSeesPy` with an interface dedicated to the development and analysis of regular bridge deck grillage models."
 	},
-	"github/sjvrijn/mf2": {
-	"id": "github/sjvrijn/mf2",
-	"title": "github/sjvrijn/mf2",
-	"url": " https://rseng.github.io/software/repository/github/sjvrijn/mf2",
-	"content": "Collection of Multi-Fidelity benchmark functions"
+	"github/metagenlab/MeSS": {
+	"id": "github/metagenlab/MeSS",
+	"title": "github/metagenlab/MeSS",
+	"url": " https://rseng.github.io/software/repository/github/metagenlab/MeSS",
+	"content": "Snakemake pipeline for simulating shotgun metagenomic samples"
 	},
-	"github/SWIFTSIM/emulator": {
-	"id": "github/SWIFTSIM/emulator",
-	"title": "github/SWIFTSIM/emulator",
-	"url": " https://rseng.github.io/software/repository/github/SWIFTSIM/emulator",
-	"content": "The SWIFT simulation cosmological emulator (swift-emulator)"
+	"github/metagenlab/assembly_finder": {
+	"id": "github/metagenlab/assembly_finder",
+	"title": "github/metagenlab/assembly_finder",
+	"url": " https://rseng.github.io/software/repository/github/metagenlab/assembly_finder",
+	"content": "snakemake-powered cli to download genomes using NCBI datasets"
 	},
-	"github/JulianKarlBauer/mechkit": {
-	"id": "github/JulianKarlBauer/mechkit",
-	"title": "github/JulianKarlBauer/mechkit",
-	"url": " https://rseng.github.io/software/repository/github/JulianKarlBauer/mechkit",
-	"content": "Continuum mechanics toolkit"
+	"github/bhorowitz/HyPhy-public": {
+	"id": "github/bhorowitz/HyPhy-public",
+	"title": "github/bhorowitz/HyPhy-public",
+	"url": " https://rseng.github.io/software/repository/github/bhorowitz/HyPhy-public",
+	"content": "Deep generative model for painting hydrodynamical physics onto dark matter simulations"
 	},
-	"github/bradkav/NbodyIMRI": {
-	"id": "github/bradkav/NbodyIMRI",
-	"title": "github/bradkav/NbodyIMRI",
-	"url": " https://rseng.github.io/software/repository/github/bradkav/NbodyIMRI",
-	"content": "N-body solver in python, tailored to intermediate-mass ratio inspirals of black holes and dark matter spikes"
+	"github/andreyshabalin/TwinEQTL": {
+	"id": "github/andreyshabalin/TwinEQTL",
+	"title": "github/andreyshabalin/TwinEQTL",
+	"url": " https://rseng.github.io/software/repository/github/andreyshabalin/TwinEQTL",
+	"content": "TwinMeta: Fast and Powerful Association Analysis for eQTL and GWAS in Twin Studies"
 	},
-	"github/bradkav/CEvNS": {
-	"id": "github/bradkav/CEvNS",
-	"title": "github/bradkav/CEvNS",
-	"url": " https://rseng.github.io/software/repository/github/bradkav/CEvNS",
-	"content": "Code for calculating Coherent Elastic Neutrino-Nucleus Scattering (CEvNS) cross sections and recoil spectra. Also includes code for obtaining New Physics constraints from the COHERENT-2017 results."
+	"github/astrosupriyo/pyTANSPEC": {
+	"id": "github/astrosupriyo/pyTANSPEC",
+	"title": "github/astrosupriyo/pyTANSPEC",
+	"url": " https://rseng.github.io/software/repository/github/astrosupriyo/pyTANSPEC",
+	"content": "Python tool for extracting 1D TANSPEC spectra from 2D image"
 	},
-	"github/bradkav/DMRadon": {
-	"id": "github/bradkav/DMRadon",
-	"title": "github/bradkav/DMRadon",
-	"url": " https://rseng.github.io/software/repository/github/bradkav/DMRadon",
-	"content": "Tools for calculating the Radon Transform, for use in the analysis of Directional Dark Matter Direct Detection"
+	"github/nigyta/dfast_core": {
+	"id": "github/nigyta/dfast_core",
+	"title": "github/nigyta/dfast_core",
+	"url": " https://rseng.github.io/software/repository/github/nigyta/dfast_core",
+	"content": "is a flexible and customizable pipeline for prokaryotic genome annotation as well as data submission to the INSDC."
 	},
-	"github/bradkav/BlackHolesDarkDress": {
-	"id": "github/bradkav/BlackHolesDarkDress",
-	"title": "github/bradkav/BlackHolesDarkDress",
-	"url": " https://rseng.github.io/software/repository/github/bradkav/BlackHolesDarkDress",
-	"content": "Code for studying primordial black hole (PBH) binaries, clothed in dark matter (DM) halos, associated with the paper &#34;Black Holes&#39; Dark Dress: On the merger rate of a subdominant population of primordial black holes&#34;."
+	"github/xiaotiand/FunFor": {
+	"id": "github/xiaotiand/FunFor",
+	"title": "github/xiaotiand/FunFor",
+	"url": " https://rseng.github.io/software/repository/github/xiaotiand/FunFor",
+	"content": "FunFor R package"
 	},
-	"github/bradkav/EarthShadow": {
-	"id": "github/bradkav/EarthShadow",
-	"title": "github/bradkav/EarthShadow",
-	"url": " https://rseng.github.io/software/repository/github/bradkav/EarthShadow",
-	"content": "A tool for calculating the impact of Earth-scattering on the distribution of Dark Matter (DM) particles. Includes (Mathematica) code, numerical results, plots and animations."
+	"github/el2718/FastQSL": {
+	"id": "github/el2718/FastQSL",
+	"title": "github/el2718/FastQSL",
+	"url": " https://rseng.github.io/software/repository/github/el2718/FastQSL",
+	"content": "None"
 	},
-	"github/bradkav/verne": {
-	"id": "github/bradkav/verne",
-	"title": "github/bradkav/verne",
-	"url": " https://rseng.github.io/software/repository/github/bradkav/verne",
-	"content": "Python code for calculating the Earth-stopping effect for super-heavy Dark Matter (DM)."
+	"github/htjb/maxsmooth": {
+	"id": "github/htjb/maxsmooth",
+	"title": "github/htjb/maxsmooth",
+	"url": " https://rseng.github.io/software/repository/github/htjb/maxsmooth",
+	"content": "Constrained Derivative Function Optimisation"
 	},
-	"github/bradkav/WIMpy_NREFT": {
-	"id": "github/bradkav/WIMpy_NREFT",
-	"title": "github/bradkav/WIMpy_NREFT",
-	"url": " https://rseng.github.io/software/repository/github/bradkav/WIMpy_NREFT",
-	"content": "WIMpy_NREFT is a code for calculating Dark Matter direct detection rates in the framework of non-relativistic effective field theory (NREFT)."
+	"github/htjb/globalemu": {
+	"id": "github/htjb/globalemu",
+	"title": "github/htjb/globalemu",
+	"url": " https://rseng.github.io/software/repository/github/htjb/globalemu",
+	"content": "Robust and fast global (sky-averaged) 21-cm signal emulation"
 	},
-	"github/bradkav/runDM": {
-	"id": "github/bradkav/runDM",
-	"title": "github/bradkav/runDM",
-	"url": " https://rseng.github.io/software/repository/github/bradkav/runDM",
-	"content": "A tool (in Mathematica and Python) for calculating the running of the couplings of Dark Matter (DM) to the Standard Model (SM) in simplified models with vector mediators."
+	"github/htjb/margarine": {
+	"id": "github/htjb/margarine",
+	"title": "github/htjb/margarine",
+	"url": " https://rseng.github.io/software/repository/github/htjb/margarine",
+	"content": "Code to replicate posterior probability distributions with bijectors/KDEs and perform marginal KL/bayesian dimensionality calculations."
 	},
-	"github/bradkav/AntiparticleDM": {
-	"id": "github/bradkav/AntiparticleDM",
-	"title": "github/bradkav/AntiparticleDM",
-	"url": " https://rseng.github.io/software/repository/github/bradkav/AntiparticleDM",
-	"content": "Prospects for discriminating between Majorana and Dirac Dark Matter using future direct detection data. "
+	"github/EESI/Complet-Plus": {
+	"id": "github/EESI/Complet-Plus",
+	"title": "github/EESI/Complet-Plus",
+	"url": " https://rseng.github.io/software/repository/github/EESI/Complet-Plus",
+	"content": "Complet-Plus by Rachel Nguyen and Drexel EESI Lab"
 	},
-	"github/bradkav/EarthScatterLikelihood": {
-	"id": "github/bradkav/EarthScatterLikelihood",
-	"title": "github/bradkav/EarthScatterLikelihood",
-	"url": " https://rseng.github.io/software/repository/github/bradkav/EarthScatterLikelihood",
-	"content": "Code for calculating event rates and likelihoods for Dark Matter direct detection experiments in the presence of Earth-Scattering"
+	"github/xfengnefx/hifiasm-meta": {
+	"id": "github/xfengnefx/hifiasm-meta",
+	"title": "github/xfengnefx/hifiasm-meta",
+	"url": " https://rseng.github.io/software/repository/github/xfengnefx/hifiasm-meta",
+	"content": "hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads."
 	},
-	"github/wwood/kingfisher-download": {
-	"id": "github/wwood/kingfisher-download",
-	"title": "github/wwood/kingfisher-download",
-	"url": " https://rseng.github.io/software/repository/github/wwood/kingfisher-download",
-	"content": "Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP."
+	"github/cdslaborg/paramonte": {
+	"id": "github/cdslaborg/paramonte",
+	"title": "github/cdslaborg/paramonte",
+	"url": " https://rseng.github.io/software/repository/github/cdslaborg/paramonte",
+	"content": "ParaMonte: Plain Powerful Parallel Monte Carlo and MCMC Library for Python, MATLAB, Fortran, C++, C."
 	},
-	"github/RTIP/artip": {
-	"id": "github/RTIP/artip",
-	"title": "github/RTIP/artip",
-	"url": " https://rseng.github.io/software/repository/github/RTIP/artip",
-	"content": "Automated Radio Telescope Imaging Pipeline"
+	"github/HERA-Team/hera_opm": {
+	"id": "github/HERA-Team/hera_opm",
+	"title": "github/HERA-Team/hera_opm",
+	"url": " https://rseng.github.io/software/repository/github/HERA-Team/hera_opm",
+	"content": "Online processing of HERA data"
 	},
-	"github/winger/hawking_net": {
-	"id": "github/winger/hawking_net",
-	"title": "github/winger/hawking_net",
-	"url": " https://rseng.github.io/software/repository/github/winger/hawking_net",
-	"content": "None"
+	"github/HERA-Team/matvis": {
+	"id": "github/HERA-Team/matvis",
+	"title": "github/HERA-Team/matvis",
+	"url": " https://rseng.github.io/software/repository/github/HERA-Team/matvis",
+	"content": "Fast matrix-based visibility simulator"
 	},
-	"github/openjournals/joss": {
-	"id": "github/openjournals/joss",
-	"title": "github/openjournals/joss",
-	"url": " https://rseng.github.io/software/repository/github/openjournals/joss",
-	"content": "The Journal of Open Source Software"
+	"github/HERA-Team/aipy": {
+	"id": "github/HERA-Team/aipy",
+	"title": "github/HERA-Team/aipy",
+	"url": " https://rseng.github.io/software/repository/github/HERA-Team/aipy",
+	"content": "Astronomical Interferometry in PYthon (AIPY)"
 	},
-	"github/sundarjhu/2-DUST": {
-	"id": "github/sundarjhu/2-DUST",
-	"title": "github/sundarjhu/2-DUST",
-	"url": " https://rseng.github.io/software/repository/github/sundarjhu/2-DUST",
-	"content": "2-DUST is a general-purpose dust radiative transfer code for an axisymmetric system that reveals the global energetics of dust grains in the shell and the 2-D projected morphologies of the shell that are strongly dependent on the mixed effects of the axisymmetric dust distribution and inclination angle. It can be used to model a variety of axisymmetric astronomical dust systems."
+	"github/tessgi/tvguide": {
+	"id": "github/tessgi/tvguide",
+	"title": "github/tessgi/tvguide",
+	"url": " https://rseng.github.io/software/repository/github/tessgi/tvguide",
+	"content": "A tool for determining whether stars and galaxies are observable by TESS."
 	},
-	"github/Michalychforever/AsPy": {
-	"id": "github/Michalychforever/AsPy",
-	"title": "github/Michalychforever/AsPy",
-	"url": " https://rseng.github.io/software/repository/github/Michalychforever/AsPy",
-	"content": "Code to compute the determinant of aspherical fluctuations in spherical collapse background"
+	"github/BioinformaticsPlatformWIV-ISP/PACU": {
+	"id": "github/BioinformaticsPlatformWIV-ISP/PACU",
+	"title": "github/BioinformaticsPlatformWIV-ISP/PACU",
+	"url": " https://rseng.github.io/software/repository/github/BioinformaticsPlatformWIV-ISP/PACU",
+	"content": "Workflow for whole genome sequencing based phylogeny of Illumina and ONT R9/R10 data."
 	},
-	"github/Michalychforever/CLASS_LVDM": {
-	"id": "github/Michalychforever/CLASS_LVDM",
-	"title": "github/Michalychforever/CLASS_LVDM",
-	"url": " https://rseng.github.io/software/repository/github/Michalychforever/CLASS_LVDM",
-	"content": "CLASS extension that incorporates a model with Lorentz invariance violation in gravity and dark matter"
+	"github/mcsiple/mmrefpoints": {
+	"id": "github/mcsiple/mmrefpoints",
+	"title": "github/mcsiple/mmrefpoints",
+	"url": " https://rseng.github.io/software/repository/github/mcsiple/mmrefpoints",
+	"content": "A package for simulating marine mammal abundance and calculating reference points."
 	},
-	"github/palumbom/grass": {
-	"id": "github/palumbom/grass",
-	"title": "github/palumbom/grass",
-	"url": " https://rseng.github.io/software/repository/github/palumbom/grass",
-	"content": "A testbed for stellar granulation in exoplanet RV searches. "
+	"github/shaniAmare/long_read_tools": {
+	"id": "github/shaniAmare/long_read_tools",
+	"title": "github/shaniAmare/long_read_tools",
+	"url": " https://rseng.github.io/software/repository/github/shaniAmare/long_read_tools",
+	"content": "A catalogue of available long read sequencing data analysis tools"
 	},
-	"github/vfonov/DARQ": {
-	"id": "github/vfonov/DARQ",
-	"title": "github/vfonov/DARQ",
-	"url": " https://rseng.github.io/software/repository/github/vfonov/DARQ",
-	"content": "Deep learning of quality control for stereotaxic registration of human brain MRI"
+	"github/jeffzhen/omnical": {
+	"id": "github/jeffzhen/omnical",
+	"title": "github/jeffzhen/omnical",
+	"url": " https://rseng.github.io/software/repository/github/jeffzhen/omnical",
+	"content": "Redundant calibration code for low frequency radio interferometers, managed by Jeff Zheng"
 	},
-	"github/PacificBiosciences/HiPhase": {
-	"id": "github/PacificBiosciences/HiPhase",
-	"title": "github/PacificBiosciences/HiPhase",
-	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/HiPhase",
-	"content": "Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads"
+	"github/siminegroup/E2EDNA2": {
+	"id": "github/siminegroup/E2EDNA2",
+	"title": "github/siminegroup/E2EDNA2",
+	"url": " https://rseng.github.io/software/repository/github/siminegroup/E2EDNA2",
+	"content": "None"
 	},
-	"github/PacificBiosciences/pbbam": {
-	"id": "github/PacificBiosciences/pbbam",
-	"title": "github/PacificBiosciences/pbbam",
-	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/pbbam",
-	"content": "PacBio BAM C++ library"
+	"github/connor-lab/vapor": {
+	"id": "github/connor-lab/vapor",
+	"title": "github/connor-lab/vapor",
+	"url": " https://rseng.github.io/software/repository/github/connor-lab/vapor",
+	"content": "is a tool for classification of Influenza samples from raw short read sequence data for downstream bioinformatics analysis."
 	},
-	"github/PacificBiosciences/kineticsTools": {
-	"id": "github/PacificBiosciences/kineticsTools",
-	"title": "github/PacificBiosciences/kineticsTools",
-	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/kineticsTools",
-	"content": "Tools for detecting DNA modifications from single molecule, real-time sequencing data"
+	"github/venkateshgopinath/FAlCon-DNS": {
+	"id": "github/venkateshgopinath/FAlCon-DNS",
+	"title": "github/venkateshgopinath/FAlCon-DNS",
+	"url": " https://rseng.github.io/software/repository/github/venkateshgopinath/FAlCon-DNS",
+	"content": "FAlCon-DNS (Framework of time schemes for Direct Numerical Simulation of Annular Convection) is a code to solve 2D thermal convection in an annulus. It has a suite of IMEX time integration schemes."
 	},
-	"github/PacificBiosciences/blasr": {
-	"id": "github/PacificBiosciences/blasr",
-	"title": "github/PacificBiosciences/blasr",
-	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/blasr",
-	"content": "BLASR (Basic Local Alignment with Successive Refinement) maps Single Molecule Sequencing (SMS) reads that are thousands of bases long, with divergence between the read and genome dominated by insertion and deletion error."
+	"github/aasensio/hazel": {
+	"id": "github/aasensio/hazel",
+	"title": "github/aasensio/hazel",
+	"url": " https://rseng.github.io/software/repository/github/aasensio/hazel",
+	"content": "Hazel: synthesis and inversion of Stokes profiles"
 	},
-	"github/PacificBiosciences/pbcore": {
-	"id": "github/PacificBiosciences/pbcore",
-	"title": "github/PacificBiosciences/pbcore",
-	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/pbcore",
-	"content": "A Python library for reading and writing PacBio® data files"
+	"github/aasensio/sicon": {
+	"id": "github/aasensio/sicon",
+	"title": "github/aasensio/sicon",
+	"url": " https://rseng.github.io/software/repository/github/aasensio/sicon",
+	"content": "Deep Learning Assisted Stokes Inversion"
 	},
-	"github/PacificBiosciences/FALCON": {
-	"id": "github/PacificBiosciences/FALCON",
-	"title": "github/PacificBiosciences/FALCON",
-	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/FALCON",
-	"content": "FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON_unzip/wiki/Binaries"
+	"github/cvs-health/langfair": {
+	"id": "github/cvs-health/langfair",
+	"title": "github/cvs-health/langfair",
+	"url": " https://rseng.github.io/software/repository/github/cvs-health/langfair",
+	"content": "LangFair is a Python library for conducting use-case level LLM bias and fairness assessments"
 	},
-	"github/PacificBiosciences/IsoSeq": {
-	"id": "github/PacificBiosciences/IsoSeq",
-	"title": "github/PacificBiosciences/IsoSeq",
-	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/IsoSeq",
-	"content": "IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads"
+	"github/BRAIN-TO/GIRFReco.jl": {
+	"id": "github/BRAIN-TO/GIRFReco.jl",
+	"title": "github/BRAIN-TO/GIRFReco.jl",
+	"url": " https://rseng.github.io/software/repository/github/BRAIN-TO/GIRFReco.jl",
+	"content": "An Open-Source End-to-End Pipeline for Spiral Magnetic Resonance Image (MRI) Reconstruction in Julia"
 	},
-	"github/PacificBiosciences/pbalign": {
-	"id": "github/PacificBiosciences/pbalign",
-	"title": "github/PacificBiosciences/pbalign",
-	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/pbalign",
-	"content": "pbalign aligns PacBio reads to reference sequences, filters aligned reads according to user-specific filtering criteria, and converts the output to either the SAM format or PacBio Compare HDF5 (e.g., .cmp.h5) format. The output Compare HDF5 file will be compatible with Quiver if --forQuiver option is specified."
+	"github/AdrianA-T/cytomorph": {
+	"id": "github/AdrianA-T/cytomorph",
+	"title": "github/AdrianA-T/cytomorph",
+	"url": " https://rseng.github.io/software/repository/github/AdrianA-T/cytomorph",
+	"content": "Cytomorph is a open software based on the main general features of cytoneme-meditated gradient formation. This sfotware allows to upload different experimental data to study in silico the role of different biological parameters of this type of signaling. Cytomorph can also work as an in silico tester for other biological hypotheses that are difficult to validate experimentally. In addition, the software architecture is designed in different modules that make Cytomorph an adaptive computational tool in which new advances can be integrated."
 	},
-	"github/PacificBiosciences/minorseq": {
-	"id": "github/PacificBiosciences/minorseq",
-	"title": "github/PacificBiosciences/minorseq",
-	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/minorseq",
-	"content": "Minor Variant Calling and Phasing Tools"
+	"github/21cmfast/21cmEMU": {
+	"id": "github/21cmfast/21cmEMU",
+	"title": "github/21cmfast/21cmEMU",
+	"url": " https://rseng.github.io/software/repository/github/21cmfast/21cmEMU",
+	"content": "An emulator of 21cmFAST summaries."
 	},
-	"github/PacificBiosciences/pbmm2": {
-	"id": "github/PacificBiosciences/pbmm2",
-	"title": "github/PacificBiosciences/pbmm2",
-	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/pbmm2",
-	"content": "A minimap2 frontend for PacBio native data formats"
+	"github/ratschlab/metagraph": {
+	"id": "github/ratschlab/metagraph",
+	"title": "github/ratschlab/metagraph",
+	"url": " https://rseng.github.io/software/repository/github/ratschlab/metagraph",
+	"content": "Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly"
 	},
-	"github/PacificBiosciences/pbcopper": {
-	"id": "github/PacificBiosciences/pbcopper",
-	"title": "github/PacificBiosciences/pbcopper",
-	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/pbcopper",
-	"content": "Core C++ library for data structures, algorithms, and utilities"
+	"github/morphometry/papaya2": {
+	"id": "github/morphometry/papaya2",
+	"title": "github/morphometry/papaya2",
+	"url": " https://rseng.github.io/software/repository/github/morphometry/papaya2",
+	"content": "compute 2D irreducible Minkowski tensors"
 	},
-	"github/PacificBiosciences/pbbioconda": {
-	"id": "github/PacificBiosciences/pbbioconda",
-	"title": "github/PacificBiosciences/pbbioconda",
-	"url": " https://rseng.github.io/software/repository/github/PacificBiosciences/pbbioconda",
-	"content": "PacBio Secondary Analysis Tools on Bioconda"
+	"github/mazzalab/pyntacle": {
+	"id": "github/mazzalab/pyntacle",
+	"title": "github/mazzalab/pyntacle",
+	"url": " https://rseng.github.io/software/repository/github/mazzalab/pyntacle",
+	"content": "A high performance python package for network analysis based on non canonical metrics"
 	},
-	"github/BonsonW/slow5curl": {
-	"id": "github/BonsonW/slow5curl",
-	"title": "github/BonsonW/slow5curl",
-	"url": " https://rseng.github.io/software/repository/github/BonsonW/slow5curl",
-	"content": "A library and tool for accessing remote BLOW5 files."
+	"github/RamanLab/iCOMIC": {
+	"id": "github/RamanLab/iCOMIC",
+	"title": "github/RamanLab/iCOMIC",
+	"url": " https://rseng.github.io/software/repository/github/RamanLab/iCOMIC",
+	"content": "None"
 	},
-	"github/Hi-COLACode/Hi-COLA": {
-	"id": "github/Hi-COLACode/Hi-COLA",
-	"title": "github/Hi-COLACode/Hi-COLA",
-	"url": " https://rseng.github.io/software/repository/github/Hi-COLACode/Hi-COLA",
-	"content": "Hi-COLA simulates cosmological large-scale structure for a wide class of Horndeski theories. Built using a COLA solver forked from FML by HAWinther."
+	"github/bwkeller/PASTA": {
+	"id": "github/bwkeller/PASTA",
+	"title": "github/bwkeller/PASTA",
+	"url": " https://rseng.github.io/software/repository/github/bwkeller/PASTA",
+	"content": "Python Astronomical Stacking Tool Array"
 	},
-	"github/ezer/PAFway": {
-	"id": "github/ezer/PAFway",
-	"title": "github/ezer/PAFway",
-	"url": " https://rseng.github.io/software/repository/github/ezer/PAFway",
-	"content": "functional associations in networks"
+	"github/OpenMD/OpenMD": {
+	"id": "github/OpenMD/OpenMD",
+	"title": "github/OpenMD/OpenMD",
+	"url": " https://rseng.github.io/software/repository/github/OpenMD/OpenMD",
+	"content": "Molecular Dynamics in the Open"
 	},
-	"github/hiddenSymmetries/simsopt": {
-	"id": "github/hiddenSymmetries/simsopt",
-	"title": "github/hiddenSymmetries/simsopt",
-	"url": " https://rseng.github.io/software/repository/github/hiddenSymmetries/simsopt",
-	"content": "Simons Stellarator Optimizer Code"
+	"github/Astro-Sean/escatter": {
+	"id": "github/Astro-Sean/escatter",
+	"title": "github/Astro-Sean/escatter",
+	"url": " https://rseng.github.io/software/repository/github/Astro-Sean/escatter",
+	"content": "Python script to perform Monte Carlo simulations of electron scattering events in interacting supernovae."
+	},
+	"github/Astro-Sean/autophot": {
+	"id": "github/Astro-Sean/autophot",
+	"title": "github/Astro-Sean/autophot",
+	"url": " https://rseng.github.io/software/repository/github/Astro-Sean/autophot",
+	"content": "The AUTOmated Photometry Of Transients (AutoPhOT) is a novel automated pipeline that is designed for rapid, publication-quality photometry of transients."
 	},
-	"github/trivnguyen/florah": {
-	"id": "github/trivnguyen/florah",
-	"title": "github/trivnguyen/florah",
-	"url": " https://rseng.github.io/software/repository/github/trivnguyen/florah",
-	"content": "Generate galaxy merger tree with machine learning"
+	"github/finagle29/DBSP_DRP": {
+	"id": "github/finagle29/DBSP_DRP",
+	"title": "github/finagle29/DBSP_DRP",
+	"url": " https://rseng.github.io/software/repository/github/finagle29/DBSP_DRP",
+	"content": "Fully-automated data reduction pipeline for DBSP built with PypeIt"
 	},
-	"github/lime-rt/lime": {
-	"id": "github/lime-rt/lime",
-	"title": "github/lime-rt/lime",
-	"url": " https://rseng.github.io/software/repository/github/lime-rt/lime",
-	"content": "Line Modeling Engine"
+	"github/mengaldo/PySPOD": {
+	"id": "github/mengaldo/PySPOD",
+	"title": "github/mengaldo/PySPOD",
+	"url": " https://rseng.github.io/software/repository/github/mengaldo/PySPOD",
+	"content": "A Python package for spectral proper orthogonal decomposition (SPOD). "
 	},
-	"github/uwsbel/low-fidelity-dynamic-models": {
-	"id": "github/uwsbel/low-fidelity-dynamic-models",
-	"title": "github/uwsbel/low-fidelity-dynamic-models",
-	"url": " https://rseng.github.io/software/repository/github/uwsbel/low-fidelity-dynamic-models",
-	"content": "A library of fast and accurate low fidelity dynamic models for applications in robotics"
+	"github/OPUS-MaLab/opus_fold3": {
+	"id": "github/OPUS-MaLab/opus_fold3",
+	"title": "github/OPUS-MaLab/opus_fold3",
+	"url": " https://rseng.github.io/software/repository/github/OPUS-MaLab/opus_fold3",
+	"content": "None"
 	},
-	"github/pmoulos/metaseqR2": {
-	"id": "github/pmoulos/metaseqR2",
-	"title": "github/pmoulos/metaseqR2",
-	"url": " https://rseng.github.io/software/repository/github/pmoulos/metaseqR2",
-	"content": "An R package for the analysis, meta-analysis and result reporting of RNA-Seq gene expression data - Next Generation!"
+	"github/AtrCheema/SeqMetrics": {
+	"id": "github/AtrCheema/SeqMetrics",
+	"title": "github/AtrCheema/SeqMetrics",
+	"url": " https://rseng.github.io/software/repository/github/AtrCheema/SeqMetrics",
+	"content": "Various errors for tabular/structured/time-series data"
 	},
-	"github/Kkritos/Rapster": {
-	"id": "github/Kkritos/Rapster",
-	"title": "github/Kkritos/Rapster",
-	"url": " https://rseng.github.io/software/repository/github/Kkritos/Rapster",
-	"content": "Rapid population synthesis code for binary black hole mergers in dynamical environments."
+	"github/piernik-dev/piernik": {
+	"id": "github/piernik-dev/piernik",
+	"title": "github/piernik-dev/piernik",
+	"url": " https://rseng.github.io/software/repository/github/piernik-dev/piernik",
+	"content": "Piernik MHD Code"
 	},
-	"github/rhysf/HaplotypeTools": {
-	"id": "github/rhysf/HaplotypeTools",
-	"title": "github/rhysf/HaplotypeTools",
-	"url": " https://rseng.github.io/software/repository/github/rhysf/HaplotypeTools",
-	"content": "A toolkit for identifying recombination and recombinant genotypes"
+	"github/apcamargo/prodigal-gv": {
+	"id": "github/apcamargo/prodigal-gv",
+	"title": "github/apcamargo/prodigal-gv",
+	"url": " https://rseng.github.io/software/repository/github/apcamargo/prodigal-gv",
+	"content": "A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes"
 	},
-	"github/metabolomicsworkbench/MetGENE": {
-	"id": "github/metabolomicsworkbench/MetGENE",
-	"title": "github/metabolomicsworkbench/MetGENE",
-	"url": " https://rseng.github.io/software/repository/github/metabolomicsworkbench/MetGENE",
-	"content": "Gene-centric Metabolomics Information Retrieval Tool"
+	"github/Valires/er-evaluation": {
+	"id": "github/Valires/er-evaluation",
+	"title": "github/Valires/er-evaluation",
+	"url": " https://rseng.github.io/software/repository/github/Valires/er-evaluation",
+	"content": "An End-to-End Evaluation Framework for Entity Resolution Systems"
 	},
-	"github/Wytamma/snk": {
-	"id": "github/Wytamma/snk",
-	"title": "github/Wytamma/snk",
-	"url": " https://rseng.github.io/software/repository/github/Wytamma/snk",
-	"content": "Snakemake workflow management system and CLI generation tool"
+	"github/fhcrc/seqmagick": {
+	"id": "github/fhcrc/seqmagick",
+	"title": "github/fhcrc/seqmagick",
+	"url": " https://rseng.github.io/software/repository/github/fhcrc/seqmagick",
+	"content": "An imagemagick-like frontend to Biopython SeqIO"
 	},
-	"github/villano-lab/nrCascadeSim": {
-	"id": "github/villano-lab/nrCascadeSim",
-	"title": "github/villano-lab/nrCascadeSim",
-	"url": " https://rseng.github.io/software/repository/github/villano-lab/nrCascadeSim",
-	"content": "calculating the NR spectrum resulting from neutron-capture cascades."
+	"github/AngryMaciek/hypercomplex": {
+	"id": "github/AngryMaciek/hypercomplex",
+	"title": "github/AngryMaciek/hypercomplex",
+	"url": " https://rseng.github.io/software/repository/github/AngryMaciek/hypercomplex",
+	"content": "Abstract &amp; fast header-only C++ template library for lattice-based cryptosystems in high-dimensional algebras"
 	},
-	"github/kinnala/scikit-fem": {
-	"id": "github/kinnala/scikit-fem",
-	"title": "github/kinnala/scikit-fem",
-	"url": " https://rseng.github.io/software/repository/github/kinnala/scikit-fem",
-	"content": "Simple finite element assemblers for Python"
+	"github/Planet-AI-GmbH/tfaip": {
+	"id": "github/Planet-AI-GmbH/tfaip",
+	"title": "github/Planet-AI-GmbH/tfaip",
+	"url": " https://rseng.github.io/software/repository/github/Planet-AI-GmbH/tfaip",
+	"content": "Python-based research framework for developing, organizing, and deploying Deep Learning models powered by Tensorflow."
 	},
-	"github/PCMSolver/pcmsolver": {
-	"id": "github/PCMSolver/pcmsolver",
-	"title": "github/PCMSolver/pcmsolver",
-	"url": " https://rseng.github.io/software/repository/github/PCMSolver/pcmsolver",
-	"content": "An API for the Polarizable Continuum Model"
+	"github/SteveMacenski/slam_toolbox": {
+	"id": "github/SteveMacenski/slam_toolbox",
+	"title": "github/SteveMacenski/slam_toolbox",
+	"url": " https://rseng.github.io/software/repository/github/SteveMacenski/slam_toolbox",
+	"content": "Slam Toolbox for lifelong mapping and localization in potentially massive maps with ROS"
 	},
-	"github/NETL-RIC/URC-Assessment-Method": {
-	"id": "github/NETL-RIC/URC-Assessment-Method",
-	"title": "github/NETL-RIC/URC-Assessment-Method",
-	"url": " https://rseng.github.io/software/repository/github/NETL-RIC/URC-Assessment-Method",
-	"content": "Tool for evaluating the potential occurrence of URC resources using a series of validated heuristics."
+	"github/MDU-PHL/abritamr": {
+	"id": "github/MDU-PHL/abritamr",
+	"title": "github/MDU-PHL/abritamr",
+	"url": " https://rseng.github.io/software/repository/github/MDU-PHL/abritamr",
+	"content": "A pipeline for running AMRfinderPlus and collating results into functional classes"
 	},
-	"github/raddleverse/MimiBRICK.jl": {
-	"id": "github/raddleverse/MimiBRICK.jl",
-	"title": "github/raddleverse/MimiBRICK.jl",
-	"url": " https://rseng.github.io/software/repository/github/raddleverse/MimiBRICK.jl",
+	"github/ClusterMonteCarlo/CMC-COSMIC": {
+	"id": "github/ClusterMonteCarlo/CMC-COSMIC",
+	"title": "github/ClusterMonteCarlo/CMC-COSMIC",
+	"url": " https://rseng.github.io/software/repository/github/ClusterMonteCarlo/CMC-COSMIC",
 	"content": "None"
 	},
-	"github/astroCV/astroCV": {
-	"id": "github/astroCV/astroCV",
-	"title": "github/astroCV/astroCV",
-	"url": " https://rseng.github.io/software/repository/github/astroCV/astroCV",
-	"content": "Computer Vision library for Astronomy"
+	"github/hildebra/LCA": {
+	"id": "github/hildebra/LCA",
+	"title": "github/hildebra/LCA",
+	"url": " https://rseng.github.io/software/repository/github/hildebra/LCA",
+	"content": "least common ancestor evaluation given tax database and "
 	},
-	"github/ParaFly/ParaFly": {
-	"id": "github/ParaFly/ParaFly",
-	"title": "github/ParaFly/ParaFly",
-	"url": " https://rseng.github.io/software/repository/github/ParaFly/ParaFly",
-	"content": "ParaFly - parallel cmd processing utility"
+	"github/hildebra/sdm": {
+	"id": "github/hildebra/sdm",
+	"title": "github/hildebra/sdm",
+	"url": " https://rseng.github.io/software/repository/github/hildebra/sdm",
+	"content": "Fast tool for sequence related tasks"
 	},
-	"github/IanevskiAleksandr/sc-type": {
-	"id": "github/IanevskiAleksandr/sc-type",
-	"title": "github/IanevskiAleksandr/sc-type",
-	"url": " https://rseng.github.io/software/repository/github/IanevskiAleksandr/sc-type",
+	"github/dnafinder/uroccomp": {
+	"id": "github/dnafinder/uroccomp",
+	"title": "github/dnafinder/uroccomp",
+	"url": " https://rseng.github.io/software/repository/github/dnafinder/uroccomp",
+	"content": "Compare two unpaired ROC curves"
+	},
+	"github/ICRAR/shark": {
+	"id": "github/ICRAR/shark",
+	"title": "github/ICRAR/shark",
+	"url": " https://rseng.github.io/software/repository/github/ICRAR/shark",
 	"content": "None"
 	},
-	"github/cmateu/PyMGC3": {
-	"id": "github/cmateu/PyMGC3",
-	"title": "github/cmateu/PyMGC3",
-	"url": " https://rseng.github.io/software/repository/github/cmateu/PyMGC3",
-	"content": "Python toolkit for mGC3 method"
+	"github/ICRAR/libprofit": {
+	"id": "github/ICRAR/libprofit",
+	"title": "github/ICRAR/libprofit",
+	"url": " https://rseng.github.io/software/repository/github/ICRAR/libprofit",
+	"content": "A C++ library that produces images based on different luminosity profiles"
 	},
-	"github/cmateu/galstreams": {
-	"id": "github/cmateu/galstreams",
-	"title": "github/cmateu/galstreams",
-	"url": " https://rseng.github.io/software/repository/github/cmateu/galstreams",
-	"content": "Milky Way Streams Footprint Library and Toolkit for Python"
+	"github/ICRAR/ProFit": {
+	"id": "github/ICRAR/ProFit",
+	"title": "github/ICRAR/ProFit",
+	"url": " https://rseng.github.io/software/repository/github/ICRAR/ProFit",
+	"content": "ProFit is a galaxy image bulge-disk decomposition program"
 	},
-	"github/reality/klarigi": {
-	"id": "github/reality/klarigi",
-	"title": "github/reality/klarigi",
-	"url": " https://rseng.github.io/software/repository/github/reality/klarigi",
-	"content": "None"
+	"github/Adamtaranto/Yanagiba": {
+	"id": "github/Adamtaranto/Yanagiba",
+	"title": "github/Adamtaranto/Yanagiba",
+	"url": " https://rseng.github.io/software/repository/github/Adamtaranto/Yanagiba",
+	"content": "Filter and slice Nanopore reads which have been basecalled with Albacore."
 	},
-	"github/Substra/substra": {
-	"id": "github/Substra/substra",
-	"title": "github/Substra/substra",
-	"url": " https://rseng.github.io/software/repository/github/Substra/substra",
-	"content": "Low-level Python library used to interact with a Substra network"
+	"github/natelust/least_asymmetry": {
+	"id": "github/natelust/least_asymmetry",
+	"title": "github/natelust/least_asymmetry",
+	"url": " https://rseng.github.io/software/repository/github/natelust/least_asymmetry",
+	"content": "This code is to find the center of a distribution of light in an image using the least asymmetry method. The code also contains center of light and fitting a Gaussian routines as well. All functions are designed to take optional weights"
 	},
-	"github/variomes/sibtm-variomes": {
-	"id": "github/variomes/sibtm-variomes",
-	"title": "github/variomes/sibtm-variomes",
-	"url": " https://rseng.github.io/software/repository/github/variomes/sibtm-variomes",
+	"github/NoahSailer/FishLSS": {
+	"id": "github/NoahSailer/FishLSS",
+	"title": "github/NoahSailer/FishLSS",
+	"url": " https://rseng.github.io/software/repository/github/NoahSailer/FishLSS",
+	"content": "Fisher forecasting code for Large Scale Structure surveys using Lagrangian Perturbation Theory."
+	},
+	"github/aringlis/afino_release_version": {
+	"id": "github/aringlis/afino_release_version",
+	"title": "github/aringlis/afino_release_version",
+	"url": " https://rseng.github.io/software/repository/github/aringlis/afino_release_version",
 	"content": "None"
 	},
-	"github/JoelForamitti/agentpy": {
-	"id": "github/JoelForamitti/agentpy",
-	"title": "github/JoelForamitti/agentpy",
-	"url": " https://rseng.github.io/software/repository/github/JoelForamitti/agentpy",
-	"content": "AgentPy is an open-source framework for the development and analysis of agent-based models in Python."
+	"github/codemeleon/seqPanther": {
+	"id": "github/codemeleon/seqPanther",
+	"title": "github/codemeleon/seqPanther",
+	"url": " https://rseng.github.io/software/repository/github/codemeleon/seqPanther",
+	"content": "Variant Caller and Patcher"
 	},
-	"github/dlinssen/sunbather": {
-	"id": "github/dlinssen/sunbather",
-	"title": "github/dlinssen/sunbather",
-	"url": " https://rseng.github.io/software/repository/github/dlinssen/sunbather",
-	"content": "Python/Cloudy package for simulating escaping exoplanet atmospheres and their transit spectra."
+	"github/Cadaei-Yuvxvs/OSHy-X": {
+	"id": "github/Cadaei-Yuvxvs/OSHy-X",
+	"title": "github/Cadaei-Yuvxvs/OSHy-X",
+	"url": " https://rseng.github.io/software/repository/github/Cadaei-Yuvxvs/OSHy-X",
+	"content": "Open Source Hypothalamic Atlas and Segmentation for 3T and 7T"
 	},
-	"github/openmsi/openmsistream": {
-	"id": "github/openmsi/openmsistream",
-	"title": "github/openmsi/openmsistream",
-	"url": " https://rseng.github.io/software/repository/github/openmsi/openmsistream",
-	"content": "Materials data streaming applications, written in Python using Apache Kafka, with a focus on deployment in laboratory environments"
+	"github/rqtl/qtl2": {
+	"id": "github/rqtl/qtl2",
+	"title": "github/rqtl/qtl2",
+	"url": " https://rseng.github.io/software/repository/github/rqtl/qtl2",
+	"content": "QTL analysis software for high-dimensional data and complex cross designs"
 	},
-	"github/ledatelescope/bifrost": {
-	"id": "github/ledatelescope/bifrost",
-	"title": "github/ledatelescope/bifrost",
-	"url": " https://rseng.github.io/software/repository/github/ledatelescope/bifrost",
-	"content": "A stream processing framework for high-throughput applications."
+	"github/cbottrell/RealSim": {
+	"id": "github/cbottrell/RealSim",
+	"title": "github/cbottrell/RealSim",
+	"url": " https://rseng.github.io/software/repository/github/cbottrell/RealSim",
+	"content": "RealSim is the statistical observational realism suite described in Bottrell et al 2017ab and made public in Bottrell et al 2019b."
 	},
-	"github/symmy596/SurfinPy": {
-	"id": "github/symmy596/SurfinPy",
-	"title": "github/symmy596/SurfinPy",
-	"url": " https://rseng.github.io/software/repository/github/symmy596/SurfinPy",
-	"content": "Thermodynamic Phase Diagram Generator"
+	"github/cbottrell/realsim_ifs": {
+	"id": "github/cbottrell/realsim_ifs",
+	"title": "github/cbottrell/realsim_ifs",
+	"url": " https://rseng.github.io/software/repository/github/cbottrell/realsim_ifs",
+	"content": "Realistic synthetic integral field spectrscopy of galaxies from numerical simulations."
 	},
-	"github/symmy596/Polypy": {
-	"id": "github/symmy596/Polypy",
-	"title": "github/symmy596/Polypy",
-	"url": " https://rseng.github.io/software/repository/github/symmy596/Polypy",
-	"content": "polypy - Analysis Tools for Solid State Molecular Dynamics and Monte Carlo Trajectories"
+	"github/pierrexyz/pybird": {
+	"id": "github/pierrexyz/pybird",
+	"title": "github/pierrexyz/pybird",
+	"url": " https://rseng.github.io/software/repository/github/pierrexyz/pybird",
+	"content": "Python code for Biased tracers in redshift space"
 	},
-	"github/AMSSwanglab/RE-GOA": {
-	"id": "github/AMSSwanglab/RE-GOA",
-	"title": "github/AMSSwanglab/RE-GOA",
-	"url": " https://rseng.github.io/software/repository/github/AMSSwanglab/RE-GOA",
-	"content": "A tool for non-coding genomic regions function enrichment analysis based on Regulatory Elements Gene Ontology Annotation (RE-GOA)"
+	"github/pierrexyz/cbird": {
+	"id": "github/pierrexyz/cbird",
+	"title": "github/pierrexyz/cbird",
+	"url": " https://rseng.github.io/software/repository/github/pierrexyz/cbird",
+	"content": "Code for Bias tracers In Redshift space"
 	},
-	"github/AMSSwanglab/SpecVar": {
-	"id": "github/AMSSwanglab/SpecVar",
-	"title": "github/AMSSwanglab/SpecVar",
-	"url": " https://rseng.github.io/software/repository/github/AMSSwanglab/SpecVar",
-	"content": "SpecVar is a convenient tool for estimating interpretable genetic correlation of human complex traits and annotating the SNPs with context specific regulatory networks"
+	"github/djsutherland/py-sdm": {
+	"id": "github/djsutherland/py-sdm",
+	"title": "github/djsutherland/py-sdm",
+	"url": " https://rseng.github.io/software/repository/github/djsutherland/py-sdm",
+	"content": "Python implementation of nonparametric nearest-neighbor-based estimators for divergences between distributions."
 	},
-	"github/siminegroup/E2EDNA2": {
-	"id": "github/siminegroup/E2EDNA2",
-	"title": "github/siminegroup/E2EDNA2",
-	"url": " https://rseng.github.io/software/repository/github/siminegroup/E2EDNA2",
+	"github/jw-lin/cbeam": {
+	"id": "github/jw-lin/cbeam",
+	"title": "github/jw-lin/cbeam",
+	"url": " https://rseng.github.io/software/repository/github/jw-lin/cbeam",
 	"content": "None"
 	},
-	"github/plotly/dash": {
-	"id": "github/plotly/dash",
-	"title": "github/plotly/dash",
-	"url": " https://rseng.github.io/software/repository/github/plotly/dash",
-	"content": "Analytical Web Apps for Python, R, Julia, and Jupyter. No JavaScript Required."
-	},
-	"github/mlpack/mlpack": {
-	"id": "github/mlpack/mlpack",
-	"title": "github/mlpack/mlpack",
-	"url": " https://rseng.github.io/software/repository/github/mlpack/mlpack",
-	"content": "mlpack: a scalable C++ machine learning library -- "
-	},
-	"github/pybamm-team/liionpack": {
-	"id": "github/pybamm-team/liionpack",
-	"title": "github/pybamm-team/liionpack",
-	"url": " https://rseng.github.io/software/repository/github/pybamm-team/liionpack",
-	"content": "A battery pack simulation tool that uses the PyBaMM framework"
-	},
-	"github/pybamm-team/PyBaMM": {
-	"id": "github/pybamm-team/PyBaMM",
-	"title": "github/pybamm-team/PyBaMM",
-	"url": " https://rseng.github.io/software/repository/github/pybamm-team/PyBaMM",
-	"content": "Fast and flexible physics-based battery models in Python"
+	"github/jw-lin/lightbeam": {
+	"id": "github/jw-lin/lightbeam",
+	"title": "github/jw-lin/lightbeam",
+	"url": " https://rseng.github.io/software/repository/github/jw-lin/lightbeam",
+	"content": "simulate light through weakly-guiding waveguides using the finite-differences beam propagation method on an adaptive mesh"
 	},
-	"github/fAndreuzzi/BisPy": {
-	"id": "github/fAndreuzzi/BisPy",
-	"title": "github/fAndreuzzi/BisPy",
-	"url": " https://rseng.github.io/software/repository/github/fAndreuzzi/BisPy",
-	"content": "BisPy - A bisimulation library for Python."
+	"github/networkx/networkx": {
+	"id": "github/networkx/networkx",
+	"title": "github/networkx/networkx",
+	"url": " https://rseng.github.io/software/repository/github/networkx/networkx",
+	"content": "Network Analysis in Python"
 	},
-	"github/PACurran/MCSpearman": {
-	"id": "github/PACurran/MCSpearman",
-	"title": "github/PACurran/MCSpearman",
-	"url": " https://rseng.github.io/software/repository/github/PACurran/MCSpearman",
-	"content": "Monte Carlo error analyses of Spearman’s rank test"
+	"github/mishioo/tesliper": {
+	"id": "github/mishioo/tesliper",
+	"title": "github/mishioo/tesliper",
+	"url": " https://rseng.github.io/software/repository/github/mishioo/tesliper",
+	"content": "Theoretical Spectroscopist&#39;s Little Helper"
 	},
-	"github/fair-workflows/nanopub": {
-	"id": "github/fair-workflows/nanopub",
-	"title": "github/fair-workflows/nanopub",
-	"url": " https://rseng.github.io/software/repository/github/fair-workflows/nanopub",
-	"content": "Python client for searching, publishing and modifying nanopublications."
+	"github/MichielCottaar/velbin": {
+	"id": "github/MichielCottaar/velbin",
+	"title": "github/MichielCottaar/velbin",
+	"url": " https://rseng.github.io/software/repository/github/MichielCottaar/velbin",
+	"content": "No relation to the Russian village"
 	},
-	"github/fair-workflows/fairworkflows": {
-	"id": "github/fair-workflows/fairworkflows",
-	"title": "github/fair-workflows/fairworkflows",
-	"url": " https://rseng.github.io/software/repository/github/fair-workflows/fairworkflows",
-	"content": "A python library for constructing, modifying and publishing scientific workflows described using semantic technologies."
+	"github/robynlm/ebweyl": {
+	"id": "github/robynlm/ebweyl",
+	"title": "github/robynlm/ebweyl",
+	"url": " https://rseng.github.io/software/repository/github/robynlm/ebweyl",
+	"content": "None"
 	},
-	"github/fair-workflows/NanopubJL": {
-	"id": "github/fair-workflows/NanopubJL",
-	"title": "github/fair-workflows/NanopubJL",
-	"url": " https://rseng.github.io/software/repository/github/fair-workflows/NanopubJL",
-	"content": "JupyterLab extension to aid in searching and publishing of Nanopublications in a python notebook"
+	"github/robynlm/ICPertFLRW": {
+	"id": "github/robynlm/ICPertFLRW",
+	"title": "github/robynlm/ICPertFLRW",
+	"url": " https://rseng.github.io/software/repository/github/robynlm/ICPertFLRW",
+	"content": "None"
 	},
-	"github/dpseidel/stmove": {
-	"id": "github/dpseidel/stmove",
-	"title": "github/dpseidel/stmove",
-	"url": " https://rseng.github.io/software/repository/github/dpseidel/stmove",
-	"content": "Build reproducible reports for spatial-temporal animal movement analysis"
+	"github/robynlm/sphereint": {
+	"id": "github/robynlm/sphereint",
+	"title": "github/robynlm/sphereint",
+	"url": " https://rseng.github.io/software/repository/github/robynlm/sphereint",
+	"content": "Code to integrate data on a grid within a sphere"
 	},
-	"github/bio-tools/biotoolsSum": {
-	"id": "github/bio-tools/biotoolsSum",
-	"title": "github/bio-tools/biotoolsSum",
-	"url": " https://rseng.github.io/software/repository/github/bio-tools/biotoolsSum",
-	"content": "bio.tools interface with report generation features"
+	"github/oliverphilcox/PolyBin": {
+	"id": "github/oliverphilcox/PolyBin",
+	"title": "github/oliverphilcox/PolyBin",
+	"url": " https://rseng.github.io/software/repository/github/oliverphilcox/PolyBin",
+	"content": "Binned polyspectrum estimation on the full sky, optionally polarized and mask-deconvolved"
 	},
-	"github/SeaIce-Math/SubZero": {
-	"id": "github/SeaIce-Math/SubZero",
-	"title": "github/SeaIce-Math/SubZero",
-	"url": " https://rseng.github.io/software/repository/github/SeaIce-Math/SubZero",
-	"content": "Discrete element sea ice model"
+	"github/oliverphilcox/HIPSTER": {
+	"id": "github/oliverphilcox/HIPSTER",
+	"title": "github/oliverphilcox/HIPSTER",
+	"url": " https://rseng.github.io/software/repository/github/oliverphilcox/HIPSTER",
+	"content": "HIPSTER: HIgh-k Power SpecTrum and bispectrum EstimatoR"
 	},
-	"github/VChristiaens/vcal_sphere": {
-	"id": "github/VChristiaens/vcal_sphere",
-	"title": "github/VChristiaens/vcal_sphere",
-	"url": " https://rseng.github.io/software/repository/github/VChristiaens/vcal_sphere",
-	"content": "Pipeline for calibration, pre-processing and post-processing of SPHERE IRDIS and IFS data, based on VIP routines.."
+	"github/oliverphilcox/HADES": {
+	"id": "github/oliverphilcox/HADES",
+	"title": "github/oliverphilcox/HADES",
+	"url": " https://rseng.github.io/software/repository/github/oliverphilcox/HADES",
+	"content": "A Hexadecapolar Analysis for Dust Estimation in Simulations (of CMB B-mode thermal dust emission)"
 	},
-	"github/VChristiaens/MINDS": {
-	"id": "github/VChristiaens/MINDS",
-	"title": "github/VChristiaens/MINDS",
-	"url": " https://rseng.github.io/software/repository/github/VChristiaens/MINDS",
-	"content": "MINDS pipeline for the reduction of MIRI-MRS data"
+	"github/oliverphilcox/Keplers-Goat-Herd": {
+	"id": "github/oliverphilcox/Keplers-Goat-Herd",
+	"title": "github/oliverphilcox/Keplers-Goat-Herd",
+	"url": " https://rseng.github.io/software/repository/github/oliverphilcox/Keplers-Goat-Herd",
+	"content": "Solving Kepler&#39;s equation via contour integration, implemented in C++"
 	},
-	"github/VChristiaens/special": {
-	"id": "github/VChristiaens/special",
-	"title": "github/VChristiaens/special",
-	"url": " https://rseng.github.io/software/repository/github/VChristiaens/special",
-	"content": "Package for spectral characterization of (sub-)stellar objects"
+	"github/oliverphilcox/RascalC": {
+	"id": "github/oliverphilcox/RascalC",
+	"title": "github/oliverphilcox/RascalC",
+	"url": " https://rseng.github.io/software/repository/github/oliverphilcox/RascalC",
+	"content": "RascalC: A Fast Code for Galaxy Covariance Matrix Estimation"
 	},
-	"github/redcap-tools/PyCap": {
-	"id": "github/redcap-tools/PyCap",
-	"title": "github/redcap-tools/PyCap",
-	"url": " https://rseng.github.io/software/repository/github/redcap-tools/PyCap",
-	"content": "REDCap in Python"
+	"github/oliverphilcox/encore": {
+	"id": "github/oliverphilcox/encore",
+	"title": "github/oliverphilcox/encore",
+	"url": " https://rseng.github.io/software/repository/github/oliverphilcox/encore",
+	"content": "encore: Efficient isotropic 2-, 3-, 4-, 5- and 6-point correlation functions in C++ and CUDA"
 	},
-	"github/eblur/dust": {
-	"id": "github/eblur/dust",
-	"title": "github/eblur/dust",
-	"url": " https://rseng.github.io/software/repository/github/eblur/dust",
-	"content": "For calculating dust scattering and extinction"
+	"github/oliverphilcox/PolyBin3D": {
+	"id": "github/oliverphilcox/PolyBin3D",
+	"title": "github/oliverphilcox/PolyBin3D",
+	"url": " https://rseng.github.io/software/repository/github/oliverphilcox/PolyBin3D",
+	"content": "Binned polyspectrum estimation for 3D large-scale structure, optionally mask-deconvolved "
 	},
-	"github/jradavenport/TheHammer": {
-	"id": "github/jradavenport/TheHammer",
-	"title": "github/jradavenport/TheHammer",
-	"url": " https://rseng.github.io/software/repository/github/jradavenport/TheHammer",
-	"content": "The Hammer: An IDL Spectral Typing Suite"
+	"github/oliverphilcox/OneLoopBispectrum": {
+	"id": "github/oliverphilcox/OneLoopBispectrum",
+	"title": "github/oliverphilcox/OneLoopBispectrum",
+	"url": " https://rseng.github.io/software/repository/github/oliverphilcox/OneLoopBispectrum",
+	"content": "Computation of the one-loop bispectrum of galaxies in redshift space"
 	},
-	"github/jradavenport/appaloosa": {
-	"id": "github/jradavenport/appaloosa",
-	"title": "github/jradavenport/appaloosa",
-	"url": " https://rseng.github.io/software/repository/github/jradavenport/appaloosa",
-	"content": "Python-based flare finding code for Kepler light curves."
+	"github/oliverphilcox/EffectiveHalos": {
+	"id": "github/oliverphilcox/EffectiveHalos",
+	"title": "github/oliverphilcox/EffectiveHalos",
+	"url": " https://rseng.github.io/software/repository/github/oliverphilcox/EffectiveHalos",
+	"content": "A 1% accurate model of the matter power spectrum and cluster counts covariance, accurate to k = 1 h/Mpc."
 	},
-	"github/jradavenport/FBEYE": {
-	"id": "github/jradavenport/FBEYE",
-	"title": "github/jradavenport/FBEYE",
-	"url": " https://rseng.github.io/software/repository/github/jradavenport/FBEYE",
-	"content": "Flares By Eye, an IDL suite for analyzing Kepler light curves and validating flares"
+	"github/oliverphilcox/Spectra-Without-Windows": {
+	"id": "github/oliverphilcox/Spectra-Without-Windows",
+	"title": "github/oliverphilcox/Spectra-Without-Windows",
+	"url": " https://rseng.github.io/software/repository/github/oliverphilcox/Spectra-Without-Windows",
+	"content": "Estimators and data for window-free analysis of power spectra and bispectra"
 	},
-	"github/annacrnn/rebound_fragmentation": {
-	"id": "github/annacrnn/rebound_fragmentation",
-	"title": "github/annacrnn/rebound_fragmentation",
-	"url": " https://rseng.github.io/software/repository/github/annacrnn/rebound_fragmentation",
-	"content": "Fragmentation and bulk composition tracking code for the C version of REBOUND.  Based on Childs &amp; Steffen 2021."
+	"github/silburt/DeepMoon": {
+	"id": "github/silburt/DeepMoon",
+	"title": "github/silburt/DeepMoon",
+	"url": " https://rseng.github.io/software/repository/github/silburt/DeepMoon",
+	"content": "Convolutional neural network code for extracting Lunar craters from Digital Elevation Maps (DEMs)."
 	},
-	"github/Gabaldonlab/crossmapper": {
-	"id": "github/Gabaldonlab/crossmapper",
-	"title": "github/Gabaldonlab/crossmapper",
-	"url": " https://rseng.github.io/software/repository/github/Gabaldonlab/crossmapper",
-	"content": "Crossmapper software"
+	"github/masoncarney/stepped_luneburg": {
+	"id": "github/masoncarney/stepped_luneburg",
+	"title": "github/masoncarney/stepped_luneburg",
+	"url": " https://rseng.github.io/software/repository/github/masoncarney/stepped_luneburg",
+	"content": "Modeling of a stepped Luneburg lens for all-sky surveys"
 	},
-	"github/Gabaldonlab/perSVade": {
-	"id": "github/Gabaldonlab/perSVade",
-	"title": "github/Gabaldonlab/perSVade",
-	"url": " https://rseng.github.io/software/repository/github/Gabaldonlab/perSVade",
-	"content": "perSVade: personalized Structural Variation detection"
+	"github/lukapecnik/NiaAML": {
+	"id": "github/lukapecnik/NiaAML",
+	"title": "github/lukapecnik/NiaAML",
+	"url": " https://rseng.github.io/software/repository/github/lukapecnik/NiaAML",
+	"content": "Python automated machine learning framework."
 	},
-	"github/Gabaldonlab/jloh": {
-	"id": "github/Gabaldonlab/jloh",
-	"title": "github/Gabaldonlab/jloh",
-	"url": " https://rseng.github.io/software/repository/github/Gabaldonlab/jloh",
-	"content": "A tool to extract LOH blocks from VCF, BAM and FASTA data"
+	"github/RJArthern/WAVI.jl": {
+	"id": "github/RJArthern/WAVI.jl",
+	"title": "github/RJArthern/WAVI.jl",
+	"url": " https://rseng.github.io/software/repository/github/RJArthern/WAVI.jl",
+	"content": "WAVI ice sheet model"
 	},
-	"github/Gabaldonlab/karyon": {
-	"id": "github/Gabaldonlab/karyon",
-	"title": "github/Gabaldonlab/karyon",
-	"url": " https://rseng.github.io/software/repository/github/Gabaldonlab/karyon",
-	"content": "This is the Karyon Pipeline"
+	"github/denglab/SeqSero": {
+	"id": "github/denglab/SeqSero",
+	"title": "github/denglab/SeqSero",
+	"url": " https://rseng.github.io/software/repository/github/denglab/SeqSero",
+	"content": "Salmonella serotyping from genome sequencing data"
 	},
-	"github/Washington-University/CiftiLib": {
-	"id": "github/Washington-University/CiftiLib",
-	"title": "github/Washington-University/CiftiLib",
-	"url": " https://rseng.github.io/software/repository/github/Washington-University/CiftiLib",
-	"content": "C++ Library for reading and writing CIFTI-2 and CIFTI-1 files"
+	"github/cog-imperial/GPdoemd": {
+	"id": "github/cog-imperial/GPdoemd",
+	"title": "github/cog-imperial/GPdoemd",
+	"url": " https://rseng.github.io/software/repository/github/cog-imperial/GPdoemd",
+	"content": "Design of experiments for model discrimination using Gaussian process surrogate models"
 	},
-	"github/nkallima/sim-universal-construction": {
-	"id": "github/nkallima/sim-universal-construction",
-	"title": "github/nkallima/sim-universal-construction",
-	"url": " https://rseng.github.io/software/repository/github/nkallima/sim-universal-construction",
-	"content": "An open-source framework for concurrent data-structures and benchmarks. "
+	"github/cog-imperial/galini": {
+	"id": "github/cog-imperial/galini",
+	"title": "github/cog-imperial/galini",
+	"url": " https://rseng.github.io/software/repository/github/cog-imperial/galini",
+	"content": "An extensible MINLP solver"
 	},
-	"github/telatin/seqfu2": {
-	"id": "github/telatin/seqfu2",
-	"title": "github/telatin/seqfu2",
-	"url": " https://rseng.github.io/software/repository/github/telatin/seqfu2",
-	"content": ":rocket: seqfu - Sequece Fastx Utilities"
+	"github/cog-imperial/entmoot": {
+	"id": "github/cog-imperial/entmoot",
+	"title": "github/cog-imperial/entmoot",
+	"url": " https://rseng.github.io/software/repository/github/cog-imperial/entmoot",
+	"content": "None"
 	},
-	"github/telatin/qax": {
-	"id": "github/telatin/qax",
-	"title": "github/telatin/qax",
-	"url": " https://rseng.github.io/software/repository/github/telatin/qax",
-	"content": "Qiime2 Artifact eXtractor"
+	"github/cog-imperial/suspect": {
+	"id": "github/cog-imperial/suspect",
+	"title": "github/cog-imperial/suspect",
+	"url": " https://rseng.github.io/software/repository/github/cog-imperial/suspect",
+	"content": "Special Structure Detection for Pyomo"
 	},
-	"github/telatin/covtobed": {
-	"id": "github/telatin/covtobed",
-	"title": "github/telatin/covtobed",
-	"url": " https://rseng.github.io/software/repository/github/telatin/covtobed",
-	"content": "⛰ covtobed | Convert the coverage track from a BAM file into a BED file"
+	"github/ryneches/SuchTree": {
+	"id": "github/ryneches/SuchTree",
+	"title": "github/ryneches/SuchTree",
+	"url": " https://rseng.github.io/software/repository/github/ryneches/SuchTree",
+	"content": "A Python library for fast, thread-safe computations on phylogenetic trees"
 	},
-	"github/telatin/bamtocov": {
-	"id": "github/telatin/bamtocov",
-	"title": "github/telatin/bamtocov",
-	"url": " https://rseng.github.io/software/repository/github/telatin/bamtocov",
-	"content": "🏔  coverage extraction from BAM/CRAM files, supporting targets 📊   "
+	"github/husseinaluie/FlowSieve": {
+	"id": "github/husseinaluie/FlowSieve",
+	"title": "github/husseinaluie/FlowSieve",
+	"url": " https://rseng.github.io/software/repository/github/husseinaluie/FlowSieve",
+	"content": "FlowSieve coarse-graining code base"
 	},
-	"github/CompGenomeLab/boquila": {
-	"id": "github/CompGenomeLab/boquila",
-	"title": "github/CompGenomeLab/boquila",
-	"url": " https://rseng.github.io/software/repository/github/CompGenomeLab/boquila",
-	"content": "NGS read simulator to eliminate read nucleotide bias in sequence analysis."
+	"github/petigura/terra": {
+	"id": "github/petigura/terra",
+	"title": "github/petigura/terra",
+	"url": " https://rseng.github.io/software/repository/github/petigura/terra",
+	"content": "Transit Detection Code"
 	},
-	"github/LeonSong1995/gsMap": {
-	"id": "github/LeonSong1995/gsMap",
-	"title": "github/LeonSong1995/gsMap",
-	"url": " https://rseng.github.io/software/repository/github/LeonSong1995/gsMap",
-	"content": "gsMap (genetically informed spatial mapping of cells for complex traits) integrates spatial transcriptomics (ST) data with genome-wide association study (GWAS) summary statistics to map cells to human complex traits, including diseases, in a spatially resolved manner."
+	"github/cblearn/cblearn": {
+	"id": "github/cblearn/cblearn",
+	"title": "github/cblearn/cblearn",
+	"url": " https://rseng.github.io/software/repository/github/cblearn/cblearn",
+	"content": "Comparison-based Machine Learning in Python"
 	},
-	"github/bxskdh/TSTA": {
-	"id": "github/bxskdh/TSTA",
-	"title": "github/bxskdh/TSTA",
-	"url": " https://rseng.github.io/software/repository/github/bxskdh/TSTA",
-	"content": "pairwise and multiple sequence alignment accelerated by simd and threads"
+	"github/SzokeMark-Andor/AstroDataProcessing": {
+	"id": "github/SzokeMark-Andor/AstroDataProcessing",
+	"title": "github/SzokeMark-Andor/AstroDataProcessing",
+	"url": " https://rseng.github.io/software/repository/github/SzokeMark-Andor/AstroDataProcessing",
+	"content": "This repository contains scripts and tools for analyzing and visualizing astronomical data, specifically targeting the moment-0 maps of NGC 0628 using various methods."
 	},
-	"github/transientskp/tkp": {
-	"id": "github/transientskp/tkp",
-	"title": "github/transientskp/tkp",
-	"url": " https://rseng.github.io/software/repository/github/transientskp/tkp",
-	"content": "A transients-discovery pipeline for astronomical image-based surveys"
+	"github/SzokeMark-Andor/Chemical-composition-detector-of-Stars-using-spectroscopy": {
+	"id": "github/SzokeMark-Andor/Chemical-composition-detector-of-Stars-using-spectroscopy",
+	"title": "github/SzokeMark-Andor/Chemical-composition-detector-of-Stars-using-spectroscopy",
+	"url": " https://rseng.github.io/software/repository/github/SzokeMark-Andor/Chemical-composition-detector-of-Stars-using-spectroscopy",
+	"content": "This project analyzes spectroscopic data to detect helium, oxygen, and heliox in O and B-type stars, neutron stars, and white dwarfs. Using tools like SDSS and Astropy, it provides insights into stellar compositions and evolution through data visualization and analysis."
 	},
-	"github/transientskp/pyse": {
-	"id": "github/transientskp/pyse",
-	"title": "github/transientskp/pyse",
-	"url": " https://rseng.github.io/software/repository/github/transientskp/pyse",
-	"content": "Python Source Extractor"
+	"github/cmayer/BaitFisher-package": {
+	"id": "github/cmayer/BaitFisher-package",
+	"title": "github/cmayer/BaitFisher-package",
+	"url": " https://rseng.github.io/software/repository/github/cmayer/BaitFisher-package",
+	"content": "The BaitFisher-package is a software package for designing hybrid enrichment probes. For more information see:"
 	},
-	"github/transientskp/lpf": {
-	"id": "github/transientskp/lpf",
-	"title": "github/transientskp/lpf",
-	"url": " https://rseng.github.io/software/repository/github/transientskp/lpf",
-	"content": "None"
+	"github/LiesaSalzer/MobilityTransformR": {
+	"id": "github/LiesaSalzer/MobilityTransformR",
+	"title": "github/LiesaSalzer/MobilityTransformR",
+	"url": " https://rseng.github.io/software/repository/github/LiesaSalzer/MobilityTransformR",
+	"content": "Effective mobility Transformation for CE-MS data "
 	},
-	"github/jakelever/civicmine": {
-	"id": "github/jakelever/civicmine",
-	"title": "github/jakelever/civicmine",
-	"url": " https://rseng.github.io/software/repository/github/jakelever/civicmine",
-	"content": "Text mining cancer biomarkers for the CIVIC database"
+	"github/maize-genetics/rTASSEL": {
+	"id": "github/maize-genetics/rTASSEL",
+	"title": "github/maize-genetics/rTASSEL",
+	"url": " https://rseng.github.io/software/repository/github/maize-genetics/rTASSEL",
+	"content": "R front-end for TASSEL"
 	},
-	"github/KULL-Centre/DEERpredict": {
-	"id": "github/KULL-Centre/DEERpredict",
-	"title": "github/KULL-Centre/DEERpredict",
-	"url": " https://rseng.github.io/software/repository/github/KULL-Centre/DEERpredict",
-	"content": "Software for the prediction of DEER and PRE data from conformational ensembles."
+	"github/mdtanker/polartoolkit": {
+	"id": "github/mdtanker/polartoolkit",
+	"title": "github/mdtanker/polartoolkit",
+	"url": " https://rseng.github.io/software/repository/github/mdtanker/polartoolkit",
+	"content": "Helpful tools for polar researchers"
 	},
-	"github/exoclime/THOR": {
-	"id": "github/exoclime/THOR",
-	"title": "github/exoclime/THOR",
-	"url": " https://rseng.github.io/software/repository/github/exoclime/THOR",
-	"content": "Atmospheric fluid dynamics solver optimized for GPUs."
+	"github/mlarichardson/CosmosCanvas": {
+	"id": "github/mlarichardson/CosmosCanvas",
+	"title": "github/mlarichardson/CosmosCanvas",
+	"url": " https://rseng.github.io/software/repository/github/mlarichardson/CosmosCanvas",
+	"content": "A library that incorporates Gilles Ferrand&#39;s colourspace, creating useful colour maps for different astrophysical properties."
 	},
-	"github/exoclime/HELIOS": {
-	"id": "github/exoclime/HELIOS",
-	"title": "github/exoclime/HELIOS",
-	"url": " https://rseng.github.io/software/repository/github/exoclime/HELIOS",
-	"content": "GPU-Accelerated Radiative Transfer Code For Exoplanetary Atmospheres"
+	"github/mlarichardson/ramses2hsim": {
+	"id": "github/mlarichardson/ramses2hsim",
+	"title": "github/mlarichardson/ramses2hsim",
+	"url": " https://rseng.github.io/software/repository/github/mlarichardson/ramses2hsim",
+	"content": "A simulation pipeline for converting cosmological RAMSES simulations into input FITS cubes for the hsim pipeline."
 	},
-	"github/exoclime/HELIOS-K": {
-	"id": "github/exoclime/HELIOS-K",
-	"title": "github/exoclime/HELIOS-K",
-	"url": " https://rseng.github.io/software/repository/github/exoclime/HELIOS-K",
-	"content": "Ultrafast opacity calculator for exoplanetary atmospheres."
+	"github/dolfin-adjoint/pyadjoint": {
+	"id": "github/dolfin-adjoint/pyadjoint",
+	"title": "github/dolfin-adjoint/pyadjoint",
+	"url": " https://rseng.github.io/software/repository/github/dolfin-adjoint/pyadjoint",
+	"content": "The algorithmic differentation tool pyadjoint and add-ons."
 	},
-	"github/exoclime/HELA": {
-	"id": "github/exoclime/HELA",
-	"title": "github/exoclime/HELA",
-	"url": " https://rseng.github.io/software/repository/github/exoclime/HELA",
-	"content": "Random Forest retrieval for exoplanet atmospheres"
+	"github/smirarab/sepp": {
+	"id": "github/smirarab/sepp",
+	"title": "github/smirarab/sepp",
+	"url": " https://rseng.github.io/software/repository/github/smirarab/sepp",
+	"content": "Ensemble of HMM methods (SEPP, TIPP, UPP)"
 	},
-	"github/exoclime/FastChem": {
-	"id": "github/exoclime/FastChem",
-	"title": "github/exoclime/FastChem",
-	"url": " https://rseng.github.io/software/repository/github/exoclime/FastChem",
-	"content": "An ultra-fast equilibrium chemistry"
+	"github/smirarab/pasta": {
+	"id": "github/smirarab/pasta",
+	"title": "github/smirarab/pasta",
+	"url": " https://rseng.github.io/software/repository/github/smirarab/pasta",
+	"content": "PASTA (Practical Alignment using SATe and Transitivity) "
 	},
-	"github/exoclime/VULCAN": {
-	"id": "github/exoclime/VULCAN",
-	"title": "github/exoclime/VULCAN",
-	"url": " https://rseng.github.io/software/repository/github/exoclime/VULCAN",
-	"content": "Chemical Kinetics For Exoplanetary Atmospheres"
+	"github/darioizzo/dcgp": {
+	"id": "github/darioizzo/dcgp",
+	"title": "github/darioizzo/dcgp",
+	"url": " https://rseng.github.io/software/repository/github/darioizzo/dcgp",
+	"content": "Implementation of a differentiable CGP (Cartesian Genetic Programming)"
 	},
-	"github/exoclime/Helios-r2": {
-	"id": "github/exoclime/Helios-r2",
-	"title": "github/exoclime/Helios-r2",
-	"url": " https://rseng.github.io/software/repository/github/exoclime/Helios-r2",
-	"content": "A Bayesian Nested-Sampling Retrieval Code"
+	"github/shilpagarg/WHdenovo": {
+	"id": "github/shilpagarg/WHdenovo",
+	"title": "github/shilpagarg/WHdenovo",
+	"url": " https://rseng.github.io/software/repository/github/shilpagarg/WHdenovo",
+	"content": "None"
 	},
-	"github/ianvcaldas/smalldisco": {
-	"id": "github/ianvcaldas/smalldisco",
-	"title": "github/ianvcaldas/smalldisco",
-	"url": " https://rseng.github.io/software/repository/github/ianvcaldas/smalldisco",
-	"content": "Discovery of siRNA regions and small RNA tail quantification"
+	"github/austinpeel/herculens": {
+	"id": "github/austinpeel/herculens",
+	"title": "github/austinpeel/herculens",
+	"url": " https://rseng.github.io/software/repository/github/austinpeel/herculens",
+	"content": "Auto-differentiable strong lens modelling with JAX"
 	},
-	"github/mikegrudic/pytreegrav": {
-	"id": "github/mikegrudic/pytreegrav",
-	"title": "github/mikegrudic/pytreegrav",
-	"url": " https://rseng.github.io/software/repository/github/mikegrudic/pytreegrav",
-	"content": "Fast N-body gravitational force and potential in Python"
+	"github/monarch-initiative/loinc2hpo": {
+	"id": "github/monarch-initiative/loinc2hpo",
+	"title": "github/monarch-initiative/loinc2hpo",
+	"url": " https://rseng.github.io/software/repository/github/monarch-initiative/loinc2hpo",
+	"content": "Java library to map LOINC-encoded test results to Human Phenotype Ontology"
 	},
-	"github/mikegrudic/MakeCloud": {
-	"id": "github/mikegrudic/MakeCloud",
-	"title": "github/mikegrudic/MakeCloud",
-	"url": " https://rseng.github.io/software/repository/github/mikegrudic/MakeCloud",
-	"content": "MakeCloud: Make turbulent GMC initial conditions for GIZMO"
+	"github/CRG-CNAG/anubis": {
+	"id": "github/CRG-CNAG/anubis",
+	"title": "github/CRG-CNAG/anubis",
+	"url": " https://rseng.github.io/software/repository/github/CRG-CNAG/anubis",
+	"content": "Python package for the analysis of tn-seq data"
 	},
-	"github/putonti/virmine": {
-	"id": "github/putonti/virmine",
-	"title": "github/putonti/virmine",
-	"url": " https://rseng.github.io/software/repository/github/putonti/virmine",
-	"content": "None"
+	"github/regonzar/paravt": {
+	"id": "github/regonzar/paravt",
+	"title": "github/regonzar/paravt",
+	"url": " https://rseng.github.io/software/repository/github/regonzar/paravt",
+	"content": "PARAVT: Parallel Voronoi Tessellation"
 	},
-	"github/khowe/quick": {
-	"id": "github/khowe/quick",
-	"title": "github/khowe/quick",
-	"url": " https://rseng.github.io/software/repository/github/khowe/quick",
-	"content": "an efficient implementation of the Neighbor-Joining algorithm."
+	"github/maps-as-data/MapReader": {
+	"id": "github/maps-as-data/MapReader",
+	"title": "github/maps-as-data/MapReader",
+	"url": " https://rseng.github.io/software/repository/github/maps-as-data/MapReader",
+	"content": "A computer vision pipeline for exploring and analyzing images at scale"
 	},
-	"github/tuoyl/tat-pulsar": {
-	"id": "github/tuoyl/tat-pulsar",
-	"title": "github/tuoyl/tat-pulsar",
-	"url": " https://rseng.github.io/software/repository/github/tuoyl/tat-pulsar",
-	"content": "A Python based pulsar timing analysis tools (TAT)."
+	"github/CBIIT-CGBB/gcMECM": {
+	"id": "github/CBIIT-CGBB/gcMECM",
+	"title": "github/CBIIT-CGBB/gcMECM",
+	"url": " https://rseng.github.io/software/repository/github/CBIIT-CGBB/gcMECM",
+	"content": "None"
 	},
-	"github/christophuv/PeakBot_example": {
-	"id": "github/christophuv/PeakBot_example",
-	"title": "github/christophuv/PeakBot_example",
-	"url": " https://rseng.github.io/software/repository/github/christophuv/PeakBot_example",
-	"content": "Example scripts on how to use PeakBot"
+	"github/jmackereth/orbit-estimation": {
+	"id": "github/jmackereth/orbit-estimation",
+	"title": "github/jmackereth/orbit-estimation",
+	"url": " https://rseng.github.io/software/repository/github/jmackereth/orbit-estimation",
+	"content": "calculating fast orbital parameters using the Stäckel approximation"
 	},
-	"github/pysersic/pysersic": {
-	"id": "github/pysersic/pysersic",
-	"title": "github/pysersic/pysersic",
-	"url": " https://rseng.github.io/software/repository/github/pysersic/pysersic",
-	"content": "Bayesian fitting of Sersic profiles to galaxy images accelerated with jax"
+	"github/AMSSwanglab/RE-GOA": {
+	"id": "github/AMSSwanglab/RE-GOA",
+	"title": "github/AMSSwanglab/RE-GOA",
+	"url": " https://rseng.github.io/software/repository/github/AMSSwanglab/RE-GOA",
+	"content": "A tool for non-coding genomic regions function enrichment analysis based on Regulatory Elements Gene Ontology Annotation (RE-GOA)"
 	},
-	"github/jiwoncpark/baobab": {
-	"id": "github/jiwoncpark/baobab",
-	"title": "github/jiwoncpark/baobab",
-	"url": " https://rseng.github.io/software/repository/github/jiwoncpark/baobab",
-	"content": "Generates the training data for hierarchical inference of strongly-lensed systems with Bayesian neural networks"
+	"github/AMSSwanglab/SpecVar": {
+	"id": "github/AMSSwanglab/SpecVar",
+	"title": "github/AMSSwanglab/SpecVar",
+	"url": " https://rseng.github.io/software/repository/github/AMSSwanglab/SpecVar",
+	"content": "SpecVar is a convenient tool for estimating interpretable genetic correlation of human complex traits and annotating the SNPs with context specific regulatory networks"
 	},
-	"github/PaulRitsche/DLTrack": {
-	"id": "github/PaulRitsche/DLTrack",
-	"title": "github/PaulRitsche/DLTrack",
-	"url": " https://rseng.github.io/software/repository/github/PaulRitsche/DLTrack",
-	"content": "This repositories contains code for automatic analysis of human lower limb ultrasonography images."
+	"github/pysam-developers/pysam": {
+	"id": "github/pysam-developers/pysam",
+	"title": "github/pysam-developers/pysam",
+	"url": " https://rseng.github.io/software/repository/github/pysam-developers/pysam",
+	"content": "Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It&#39;s a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix."
 	},
-	"github/SwissClinicalTrialOrganisation/secuTrialR": {
-	"id": "github/SwissClinicalTrialOrganisation/secuTrialR",
-	"title": "github/SwissClinicalTrialOrganisation/secuTrialR",
-	"url": " https://rseng.github.io/software/repository/github/SwissClinicalTrialOrganisation/secuTrialR",
-	"content": "Handling of data from the clinical data management system secuTrial"
+	"github/shbhuk/mrexo": {
+	"id": "github/shbhuk/mrexo",
+	"title": "github/shbhuk/mrexo",
+	"url": " https://rseng.github.io/software/repository/github/shbhuk/mrexo",
+	"content": "Non parametric Mass - Radius relationship for exoplanets"
 	},
-	"github/c-martinez/BeyondTheBook": {
-	"id": "github/c-martinez/BeyondTheBook",
-	"title": "github/c-martinez/BeyondTheBook",
-	"url": " https://rseng.github.io/software/repository/github/c-martinez/BeyondTheBook",
-	"content": "Using Wikipedia to assess the translatability of text."
+	"github/shbhuk/barycorrpy": {
+	"id": "github/shbhuk/barycorrpy",
+	"title": "github/shbhuk/barycorrpy",
+	"url": " https://rseng.github.io/software/repository/github/shbhuk/barycorrpy",
+	"content": "Python version of Barycorr"
 	},
-	"github/lnscan/mitoSplitter": {
-	"id": "github/lnscan/mitoSplitter",
-	"title": "github/lnscan/mitoSplitter",
-	"url": " https://rseng.github.io/software/repository/github/lnscan/mitoSplitter",
-	"content": "None"
+	"github/ywx649999311/EzTao": {
+	"id": "github/ywx649999311/EzTao",
+	"title": "github/ywx649999311/EzTao",
+	"url": " https://rseng.github.io/software/repository/github/ywx649999311/EzTao",
+	"content": "A Python Toolkit for AGN Time Series Analysis using CARMA models"
 	},
-	"github/dib-lab/sourmash": {
-	"id": "github/dib-lab/sourmash",
-	"title": "github/dib-lab/sourmash",
-	"url": " https://rseng.github.io/software/repository/github/dib-lab/sourmash",
-	"content": "Quickly search, compare, and analyze genomic and metagenomic data sets."
+	"github/ywx649999311/vizic": {
+	"id": "github/ywx649999311/vizic",
+	"title": "github/ywx649999311/vizic",
+	"url": " https://rseng.github.io/software/repository/github/ywx649999311/vizic",
+	"content": "A Jupyter-based Interactive Visualization Tool for Astronomical Catalogs"
 	},
-	"github/dib-lab/dammit": {
-	"id": "github/dib-lab/dammit",
-	"title": "github/dib-lab/dammit",
-	"url": " https://rseng.github.io/software/repository/github/dib-lab/dammit",
-	"content": "just annotate it, dammit!"
+	"github/backyardworlds/wiseview": {
+	"id": "github/backyardworlds/wiseview",
+	"title": "github/backyardworlds/wiseview",
+	"url": " https://rseng.github.io/software/repository/github/backyardworlds/wiseview",
+	"content": "WiseView: Visualizing Motion and Variability of Faint WISE Sources"
 	},
-	"github/dib-lab/TheGreatGenotyper": {
-	"id": "github/dib-lab/TheGreatGenotyper",
-	"title": "github/dib-lab/TheGreatGenotyper",
-	"url": " https://rseng.github.io/software/repository/github/dib-lab/TheGreatGenotyper",
+	"github/NarlikarLab/exoDIVERSITY": {
+	"id": "github/NarlikarLab/exoDIVERSITY",
+	"title": "github/NarlikarLab/exoDIVERSITY",
+	"url": " https://rseng.github.io/software/repository/github/NarlikarLab/exoDIVERSITY",
 	"content": "None"
 	},
-	"github/xzackli/WignerFamilies.jl": {
-	"id": "github/xzackli/WignerFamilies.jl",
-	"title": "github/xzackli/WignerFamilies.jl",
-	"url": " https://rseng.github.io/software/repository/github/xzackli/WignerFamilies.jl",
-	"content": "compute families of wigner symbols with recurrence relations"
-	},
-	"github/rpoleski/MulensModel": {
-	"id": "github/rpoleski/MulensModel",
-	"title": "github/rpoleski/MulensModel",
-	"url": " https://rseng.github.io/software/repository/github/rpoleski/MulensModel",
-	"content": "Microlensing Modelling package"
+	"github/jsh58/Genrich": {
+	"id": "github/jsh58/Genrich",
+	"title": "github/jsh58/Genrich",
+	"url": " https://rseng.github.io/software/repository/github/jsh58/Genrich",
+	"content": "Detecting sites of genomic enrichment"
 	},
-	"github/PFPE/shipgrav": {
-	"id": "github/PFPE/shipgrav",
-	"title": "github/PFPE/shipgrav",
-	"url": " https://rseng.github.io/software/repository/github/PFPE/shipgrav",
-	"content": "Marine gravity processing for UNOLS (Python)"
+	"github/timothydmorton/isochrones": {
+	"id": "github/timothydmorton/isochrones",
+	"title": "github/timothydmorton/isochrones",
+	"url": " https://rseng.github.io/software/repository/github/timothydmorton/isochrones",
+	"content": "Pythonic stellar model grid access; easy MCMC fitting of stellar properties"
 	},
-	"github/BlackHolePerturbationToolkit/KerrGeoPy": {
-	"id": "github/BlackHolePerturbationToolkit/KerrGeoPy",
-	"title": "github/BlackHolePerturbationToolkit/KerrGeoPy",
-	"url": " https://rseng.github.io/software/repository/github/BlackHolePerturbationToolkit/KerrGeoPy",
-	"content": "Python library for computing properties of stable and plunging orbits around a spinning black hole"
+	"github/timothydmorton/vespa": {
+	"id": "github/timothydmorton/vespa",
+	"title": "github/timothydmorton/vespa",
+	"url": " https://rseng.github.io/software/repository/github/timothydmorton/vespa",
+	"content": "Validation of Exoplanet Signals using a Probabilistic Algorithm--- calculating false positive probabilities for transit signals"
 	},
-	"github/csb-toolbox/CSB": {
-	"id": "github/csb-toolbox/CSB",
-	"title": "github/csb-toolbox/CSB",
-	"url": " https://rseng.github.io/software/repository/github/csb-toolbox/CSB",
-	"content": "A Python framework for structural bioinformatics."
+	"github/GrainLearning/grainLearning": {
+	"id": "github/GrainLearning/grainLearning",
+	"title": "github/GrainLearning/grainLearning",
+	"url": " https://rseng.github.io/software/repository/github/GrainLearning/grainLearning",
+	"content": "A Bayesian uncertainty quantification toolbox for discrete and continuum numerical models of granular materials, developed by various projects of the University of Twente (NL), the Netherlands eScience Center (NL), University of Newcastle (AU), and Hiroshima University (JP)."
 	},
-	"github/cbirdferrer/collatrix": {
-	"id": "github/cbirdferrer/collatrix",
-	"title": "github/cbirdferrer/collatrix",
-	"url": " https://rseng.github.io/software/repository/github/cbirdferrer/collatrix",
-	"content": "this tool collates the outputs of the MorphoMetriX photogrammetry tool"
+	"github/RomainFeron/mwga-utils": {
+	"id": "github/RomainFeron/mwga-utils",
+	"title": "github/RomainFeron/mwga-utils",
+	"url": " https://rseng.github.io/software/repository/github/RomainFeron/mwga-utils",
+	"content": "Collection of utilities for processing Multispecies Whole Genome Alignments "
 	},
-	"github/SJLeo/FFSD": {
-	"id": "github/SJLeo/FFSD",
-	"title": "github/SJLeo/FFSD",
-	"url": " https://rseng.github.io/software/repository/github/SJLeo/FFSD",
-	"content": "Pytorch implementation of our paper accepted by IEEE TNNLS, 2022 -- Distilling a Powerful Student Model via Online Knowledge Distillation"
+	"github/JulienPeloton/s4cmb": {
+	"id": "github/JulienPeloton/s4cmb",
+	"title": "github/JulienPeloton/s4cmb",
+	"url": " https://rseng.github.io/software/repository/github/JulienPeloton/s4cmb",
+	"content": "Simulation of instrumental systematic effects in the context of CMB observations"
 	},
-	"github/Oftatkofta/cellocity": {
-	"id": "github/Oftatkofta/cellocity",
-	"title": "github/Oftatkofta/cellocity",
-	"url": " https://rseng.github.io/software/repository/github/Oftatkofta/cellocity",
-	"content": "Scientific software for analysis of confluent cell dynamics."
+	"github/bcerutti/Zeltron-code": {
+	"id": "github/bcerutti/Zeltron-code",
+	"title": "github/bcerutti/Zeltron-code",
+	"url": " https://rseng.github.io/software/repository/github/bcerutti/Zeltron-code",
+	"content": "None"
 	},
-	"github/elizabethnewman/hessQuik": {
-	"id": "github/elizabethnewman/hessQuik",
-	"title": "github/elizabethnewman/hessQuik",
-	"url": " https://rseng.github.io/software/repository/github/elizabethnewman/hessQuik",
-	"content": "Computing gradients and Hessians of feed-forward networks with GPU acceleration"
+	"github/bempp/bempp-cl": {
+	"id": "github/bempp/bempp-cl",
+	"title": "github/bempp/bempp-cl",
+	"url": " https://rseng.github.io/software/repository/github/bempp/bempp-cl",
+	"content": "A fast Python based just-in-time compiling boundary element library"
 	},
-	"github/BackmanLab/PWSpy": {
-	"id": "github/BackmanLab/PWSpy",
-	"title": "github/BackmanLab/PWSpy",
-	"url": " https://rseng.github.io/software/repository/github/BackmanLab/PWSpy",
-	"content": "A Python library dedicated to the analysis of Partial Wave Microscopy (PWS) data."
+	"github/kerkelae/disimpy": {
+	"id": "github/kerkelae/disimpy",
+	"title": "github/kerkelae/disimpy",
+	"url": " https://rseng.github.io/software/repository/github/kerkelae/disimpy",
+	"content": "Massively parallelized Monte Carlo diffusion MRI simulator written in Python."
 	},
-	"github/grant-m-s/astronomicAL": {
-	"id": "github/grant-m-s/astronomicAL",
-	"title": "github/grant-m-s/astronomicAL",
-	"url": " https://rseng.github.io/software/repository/github/grant-m-s/astronomicAL",
-	"content": "An interactive dashboard for visualisation, integration and classification of data using Active Learning."
+	"github/dfki-ric-underactuated-lab/torque_limited_simple_pendulum": {
+	"id": "github/dfki-ric-underactuated-lab/torque_limited_simple_pendulum",
+	"title": "github/dfki-ric-underactuated-lab/torque_limited_simple_pendulum",
+	"url": " https://rseng.github.io/software/repository/github/dfki-ric-underactuated-lab/torque_limited_simple_pendulum",
+	"content": "Torque Limited Simple Pendulum Underactuated System"
 	},
-	"github/dondi/GRNsight": {
-	"id": "github/dondi/GRNsight",
-	"title": "github/dondi/GRNsight",
-	"url": " https://rseng.github.io/software/repository/github/dondi/GRNsight",
-	"content": "Web app and service for modeling and visualizing gene regulatory networks."
+	"github/muzafferarikan/gNOMO2": {
+	"id": "github/muzafferarikan/gNOMO2",
+	"title": "github/muzafferarikan/gNOMO2",
+	"url": " https://rseng.github.io/software/repository/github/muzafferarikan/gNOMO2",
+	"content": "gNOMO2 allows integrated multi-omics analyses of microbiomes"
 	},
-	"github/gxiaolab/scAllele": {
-	"id": "github/gxiaolab/scAllele",
-	"title": "github/gxiaolab/scAllele",
-	"url": " https://rseng.github.io/software/repository/github/gxiaolab/scAllele",
-	"content": "scAllele is a versatile tool to detect and analyze nucleotide variants in scRNA-seq."
+	"github/rice-solar-physics/EBTEL": {
+	"id": "github/rice-solar-physics/EBTEL",
+	"title": "github/rice-solar-physics/EBTEL",
+	"url": " https://rseng.github.io/software/repository/github/rice-solar-physics/EBTEL",
+	"content": "Enthalpy-Based Thermal Evolution of Loops (EBTEL) model coded in the IDL language by J. A. Klimchuk, S. Patsourakos, and P.J. Cargill "
 	},
-	"github/pymatting/pymatting": {
-	"id": "github/pymatting/pymatting",
-	"title": "github/pymatting/pymatting",
-	"url": " https://rseng.github.io/software/repository/github/pymatting/pymatting",
-	"content": "A Python library for alpha matting"
+	"github/pyroll-project/pyroll-core": {
+	"id": "github/pyroll-project/pyroll-core",
+	"title": "github/pyroll-project/pyroll-core",
+	"url": " https://rseng.github.io/software/repository/github/pyroll-project/pyroll-core",
+	"content": "PyRoll rolling simulation framework - core library."
 	},
-	"github/JuliaDynamics/TimeseriesSurrogates.jl": {
-	"id": "github/JuliaDynamics/TimeseriesSurrogates.jl",
-	"title": "github/JuliaDynamics/TimeseriesSurrogates.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaDynamics/TimeseriesSurrogates.jl",
-	"content": "A Julia library for generating surrogate data."
+	"github/Ge-Lab/USAT": {
+	"id": "github/Ge-Lab/USAT",
+	"title": "github/Ge-Lab/USAT",
+	"url": " https://rseng.github.io/software/repository/github/Ge-Lab/USAT",
+	"content": "USAT is a software for analyzing and visualizing the Tandem Repeat (TR) alleles"
 	},
-	"github/JuliaDynamics/DrWatson.jl": {
-	"id": "github/JuliaDynamics/DrWatson.jl",
-	"title": "github/JuliaDynamics/DrWatson.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaDynamics/DrWatson.jl",
-	"content": "The perfect sidekick to your scientific inquiries"
+	"github/ismaelpessa/PyMUSE": {
+	"id": "github/ismaelpessa/PyMUSE",
+	"title": "github/ismaelpessa/PyMUSE",
+	"url": " https://rseng.github.io/software/repository/github/ismaelpessa/PyMUSE",
+	"content": "None"
 	},
-	"github/JuliaDynamics/TransitionsInTimeseries.jl": {
-	"id": "github/JuliaDynamics/TransitionsInTimeseries.jl",
-	"title": "github/JuliaDynamics/TransitionsInTimeseries.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaDynamics/TransitionsInTimeseries.jl",
-	"content": "Transition Indicators / Early Warning Signals / Regime Shifts / Change Point Detection"
+	"github/sbebo/joypy": {
+	"id": "github/sbebo/joypy",
+	"title": "github/sbebo/joypy",
+	"url": " https://rseng.github.io/software/repository/github/sbebo/joypy",
+	"content": "Joyplots in Python with matplotlib &amp; pandas :chart_with_upwards_trend:"
 	},
-	"github/alexrhowe/APOLLO": {
-	"id": "github/alexrhowe/APOLLO",
-	"title": "github/alexrhowe/APOLLO",
-	"url": " https://rseng.github.io/software/repository/github/alexrhowe/APOLLO",
-	"content": "Atmosphere retrieval code for exoplanets"
+	"github/idruglab/hignn": {
+	"id": "github/idruglab/hignn",
+	"title": "github/idruglab/hignn",
+	"url": " https://rseng.github.io/software/repository/github/idruglab/hignn",
+	"content": "Code for &#34;HiGNN: A Hierarchical Informative Graph Neural Network for Molecular Property Prediction Equipped with Feature-Wise Attention&#34;"
 	},
-	"github/arabic-digital-humanities/adhtools": {
-	"id": "github/arabic-digital-humanities/adhtools",
-	"title": "github/arabic-digital-humanities/adhtools",
-	"url": " https://rseng.github.io/software/repository/github/arabic-digital-humanities/adhtools",
-	"content": "Scripts for manipulating Arabic texts"
+	"github/JulianZDing/UniMAP": {
+	"id": "github/JulianZDing/UniMAP",
+	"title": "github/JulianZDing/UniMAP",
+	"url": " https://rseng.github.io/software/repository/github/JulianZDing/UniMAP",
+	"content": "None"
 	},
-	"github/TomWagg/cogsworth": {
-	"id": "github/TomWagg/cogsworth",
-	"title": "github/TomWagg/cogsworth",
-	"url": " https://rseng.github.io/software/repository/github/TomWagg/cogsworth",
-	"content": "A Python package for performing self-consistent population synthesis and galactic dynamics simulations"
+	"github/UFParLab/aces4": {
+	"id": "github/UFParLab/aces4",
+	"title": "github/UFParLab/aces4",
+	"url": " https://rseng.github.io/software/repository/github/UFParLab/aces4",
+	"content": "Parallel Computational Chemistry Application"
 	},
-	"github/cov-ert/gofasta": {
-	"id": "github/cov-ert/gofasta",
-	"title": "github/cov-ert/gofasta",
-	"url": " https://rseng.github.io/software/repository/github/cov-ert/gofasta",
-	"content": "provides functions for working on alignments in fasta format."
+	"github/andreasmang/claire": {
+	"id": "github/andreasmang/claire",
+	"title": "github/andreasmang/claire",
+	"url": " https://rseng.github.io/software/repository/github/andreasmang/claire",
+	"content": "Constrained Large Deformation Diffeomorphic Image Registration (CLAIRE)"
 	},
-	"github/bshoshany/OGRe": {
-	"id": "github/bshoshany/OGRe",
-	"title": "github/bshoshany/OGRe",
-	"url": " https://rseng.github.io/software/repository/github/bshoshany/OGRe",
-	"content": "An object-oriented general relativity package for Mathematica."
+	"github/MillionConcepts/lhorizon": {
+	"id": "github/MillionConcepts/lhorizon",
+	"title": "github/MillionConcepts/lhorizon",
+	"url": " https://rseng.github.io/software/repository/github/MillionConcepts/lhorizon",
+	"content": "lhorizon helps you find things in the Solar System."
 	},
-	"github/DedalusProject/eigentools": {
-	"id": "github/DedalusProject/eigentools",
-	"title": "github/DedalusProject/eigentools",
-	"url": " https://rseng.github.io/software/repository/github/DedalusProject/eigentools",
-	"content": "The Eigentools package for Dedalus"
+	"github/ZhenjiangFan/DAG-deepVASE": {
+	"id": "github/ZhenjiangFan/DAG-deepVASE",
+	"title": "github/ZhenjiangFan/DAG-deepVASE",
+	"url": " https://rseng.github.io/software/repository/github/ZhenjiangFan/DAG-deepVASE",
+	"content": "None"
 	},
-	"github/nf-core/mag": {
-	"id": "github/nf-core/mag",
-	"title": "github/nf-core/mag",
-	"url": " https://rseng.github.io/software/repository/github/nf-core/mag",
-	"content": "Assembly and binning of metagenomes"
+	"github/cb-geo/mpm": {
+	"id": "github/cb-geo/mpm",
+	"title": "github/cb-geo/mpm",
+	"url": " https://rseng.github.io/software/repository/github/cb-geo/mpm",
+	"content": "CB-Geo High-Performance Material Point Method"
 	},
-	"github/nf-core/viralrecon": {
-	"id": "github/nf-core/viralrecon",
-	"title": "github/nf-core/viralrecon",
-	"url": " https://rseng.github.io/software/repository/github/nf-core/viralrecon",
-	"content": "Assembly and intrahost/low-frequency variant calling for viral samples"
+	"github/emhuff/Balrog": {
+	"id": "github/emhuff/Balrog",
+	"title": "github/emhuff/Balrog",
+	"url": " https://rseng.github.io/software/repository/github/emhuff/Balrog",
+	"content": "DES image simulation software: We dug too deeply and too greedily"
 	},
-	"github/nf-core/sarek": {
-	"id": "github/nf-core/sarek",
-	"title": "github/nf-core/sarek",
-	"url": " https://rseng.github.io/software/repository/github/nf-core/sarek",
-	"content": "Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing"
+	"github/ABard0/MDGF-MCEC": {
+	"id": "github/ABard0/MDGF-MCEC",
+	"title": "github/ABard0/MDGF-MCEC",
+	"url": " https://rseng.github.io/software/repository/github/ABard0/MDGF-MCEC",
+	"content": "None"
 	},
-	"github/Illumina/strelka": {
-	"id": "github/Illumina/strelka",
-	"title": "github/Illumina/strelka",
-	"url": " https://rseng.github.io/software/repository/github/Illumina/strelka",
-	"content": "Strelka2 germline and somatic small variant caller"
+	"github/thomaswilliamsastro/mcfine": {
+	"id": "github/thomaswilliamsastro/mcfine",
+	"title": "github/thomaswilliamsastro/mcfine",
+	"url": " https://rseng.github.io/software/repository/github/thomaswilliamsastro/mcfine",
+	"content": "Muli-component, hyperfine fitting tool"
 	},
-	"github/Illumina/manta": {
-	"id": "github/Illumina/manta",
-	"title": "github/Illumina/manta",
-	"url": " https://rseng.github.io/software/repository/github/Illumina/manta",
-	"content": "Structural variant and indel caller for mapped sequencing data"
+	"github/s4hts/HTStream": {
+	"id": "github/s4hts/HTStream",
+	"title": "github/s4hts/HTStream",
+	"url": " https://rseng.github.io/software/repository/github/s4hts/HTStream",
+	"content": "A high throughput sequence read  toolset using a streaming approach facilitated by Linux pipes"
 	},
-	"github/Illumina/ExpansionHunterDenovo": {
-	"id": "github/Illumina/ExpansionHunterDenovo",
-	"title": "github/Illumina/ExpansionHunterDenovo",
-	"url": " https://rseng.github.io/software/repository/github/Illumina/ExpansionHunterDenovo",
-	"content": "(EHdn) is a suite of tools for detecting novel expansions of short tandem repeats (STRs)."
+	"github/JelfsMaterialsGroup/stk": {
+	"id": "github/JelfsMaterialsGroup/stk",
+	"title": "github/JelfsMaterialsGroup/stk",
+	"url": " https://rseng.github.io/software/repository/github/JelfsMaterialsGroup/stk",
+	"content": "Mirror of lukasturcani/stk - please file issues / fork / star that repo. "
 	},
-	"github/Illumina/canvas": {
-	"id": "github/Illumina/canvas",
-	"title": "github/Illumina/canvas",
-	"url": " https://rseng.github.io/software/repository/github/Illumina/canvas",
-	"content": "a tool for calling copy number variants (CNVs) from human DNA sequencing data."
+	"github/basehc/IPEV": {
+	"id": "github/basehc/IPEV",
+	"title": "github/basehc/IPEV",
+	"url": " https://rseng.github.io/software/repository/github/basehc/IPEV",
+	"content": "Software tool to identify prokaryotic and eukaryotic virus-derived sequences in virome using deep learning. Used to calculate a set of scores that reflect the probability that input sequence fragments are prokaryotic and eukaryotic viral sequences."
 	},
-	"github/Illumina/SpliceAI": {
-	"id": "github/Illumina/SpliceAI",
-	"title": "github/Illumina/SpliceAI",
-	"url": " https://rseng.github.io/software/repository/github/Illumina/SpliceAI",
-	"content": "A deep learning-based tool to identify splice variants"
+	"github/rivasiker/PhaseTypeR": {
+	"id": "github/rivasiker/PhaseTypeR",
+	"title": "github/rivasiker/PhaseTypeR",
+	"url": " https://rseng.github.io/software/repository/github/rivasiker/PhaseTypeR",
+	"content": "General-purpose phase-type functions"
 	},
-	"github/Illumina/MarViN": {
-	"id": "github/Illumina/MarViN",
-	"title": "github/Illumina/MarViN",
-	"url": " https://rseng.github.io/software/repository/github/Illumina/MarViN",
-	"content": "a method for rapid genotype refinement for whole-genome sequencing data using multi-variate normal distribution.  Whole-genome low-coverage sequencing has been combined with linkage-disequilibrium (LD) based genotype refinement to accurately and cost-effectively infer genotypes in large cohorts of individuals."
+	"github/fkiwy/Finder_charts": {
+	"id": "github/fkiwy/Finder_charts",
+	"title": "github/fkiwy/Finder_charts",
+	"url": " https://rseng.github.io/software/repository/github/fkiwy/Finder_charts",
+	"content": "A Python module to create finder charts from image data of various sky surveys"
 	},
-	"github/Illumina/akt": {
-	"id": "github/Illumina/akt",
-	"title": "github/Illumina/akt",
-	"url": " https://rseng.github.io/software/repository/github/Illumina/akt",
-	"content": "Ancestry and Kinship Tools"
+	"github/fkiwy/AstroToolBox": {
+	"id": "github/fkiwy/AstroToolBox",
+	"title": "github/fkiwy/AstroToolBox",
+	"url": " https://rseng.github.io/software/repository/github/fkiwy/AstroToolBox",
+	"content": "Java tool set for the identification and classification of astronomical objects with a focus on low-mass stars and ultra-cool dwarfs"
 	},
-	"github/oruhnau/when2heat": {
-	"id": "github/oruhnau/when2heat",
-	"title": "github/oruhnau/when2heat",
-	"url": " https://rseng.github.io/software/repository/github/oruhnau/when2heat",
-	"content": "Heating Profiles"
+	"github/fkiwy/unTimely_Catalog_explorer": {
+	"id": "github/fkiwy/unTimely_Catalog_explorer",
+	"title": "github/fkiwy/unTimely_Catalog_explorer",
+	"url": " https://rseng.github.io/software/repository/github/fkiwy/unTimely_Catalog_explorer",
+	"content": "A search and visualization tool for the unTimely Catalog"
 	},
-	"github/fchuffar/dmethr": {
-	"id": "github/fchuffar/dmethr",
-	"title": "github/fchuffar/dmethr",
-	"url": " https://rseng.github.io/software/repository/github/fchuffar/dmethr",
-	"content": "DNA Methylation repression of transcriptional activity"
+	"github/brentp/somalier": {
+	"id": "github/brentp/somalier",
+	"title": "github/brentp/somalier",
+	"url": " https://rseng.github.io/software/repository/github/brentp/somalier",
+	"content": "fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... &#34;like damn that is one smart wine guy&#34;"
 	},
-	"github/fchuffar/epimedtools": {
-	"id": "github/fchuffar/epimedtools",
-	"title": "github/fchuffar/epimedtools",
-	"url": " https://rseng.github.io/software/repository/github/fchuffar/epimedtools",
-	"content": "A package allowing multi-omics analysis using R"
+	"github/brentp/goleft": {
+	"id": "github/brentp/goleft",
+	"title": "github/brentp/goleft",
+	"url": " https://rseng.github.io/software/repository/github/brentp/goleft",
+	"content": "goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary"
 	},
-	"github/fchuffar/protopackage": {
-	"id": "github/fchuffar/protopackage",
-	"title": "github/fchuffar/protopackage",
-	"url": " https://rseng.github.io/software/repository/github/fchuffar/protopackage",
-	"content": "None"
+	"github/brentp/vcfanno": {
+	"id": "github/brentp/vcfanno",
+	"title": "github/brentp/vcfanno",
+	"url": " https://rseng.github.io/software/repository/github/brentp/vcfanno",
+	"content": "annotate a VCF with other VCFs/BEDs/tabixed files "
 	},
-	"github/vsoch/citelang": {
-	"id": "github/vsoch/citelang",
-	"title": "github/vsoch/citelang",
-	"url": " https://rseng.github.io/software/repository/github/vsoch/citelang",
-	"content": "markdown syntax and credit system for software!"
+	"github/brentp/peddy": {
+	"id": "github/brentp/peddy",
+	"title": "github/brentp/peddy",
+	"url": " https://rseng.github.io/software/repository/github/brentp/peddy",
+	"content": "genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF"
 	},
-	"github/vsoch/gridtest": {
-	"id": "github/vsoch/gridtest",
-	"title": "github/vsoch/gridtest",
-	"url": " https://rseng.github.io/software/repository/github/vsoch/gridtest",
-	"content": "grid parameters and testing for Python modules and functions"
+	"github/brentp/kexpr-nim": {
+	"id": "github/brentp/kexpr-nim",
+	"title": "github/brentp/kexpr-nim",
+	"url": " https://rseng.github.io/software/repository/github/brentp/kexpr-nim",
+	"content": "nim wrapper for Heng Li&#39;s kexpr math expression evaluator library"
 	},
-	"github/nayu0419/stMMR": {
-	"id": "github/nayu0419/stMMR",
-	"title": "github/nayu0419/stMMR",
-	"url": " https://rseng.github.io/software/repository/github/nayu0419/stMMR",
-	"content": "stMMR"
+	"github/brentp/cyvcf2": {
+	"id": "github/brentp/cyvcf2",
+	"title": "github/brentp/cyvcf2",
+	"url": " https://rseng.github.io/software/repository/github/brentp/cyvcf2",
+	"content": "a cython wrapper around htslib built for fast parsing of Variant Call Format (VCF) files."
 	},
-	"github/jodyphelan/TBProfiler": {
-	"id": "github/jodyphelan/TBProfiler",
-	"title": "github/jodyphelan/TBProfiler",
-	"url": " https://rseng.github.io/software/repository/github/jodyphelan/TBProfiler",
-	"content": "Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data"
+	"github/brentp/hts-nim-tools": {
+	"id": "github/brentp/hts-nim-tools",
+	"title": "github/brentp/hts-nim-tools",
+	"url": " https://rseng.github.io/software/repository/github/brentp/hts-nim-tools",
+	"content": "useful command-line tools written to showcase hts-nim"
 	},
-	"github/jodyphelan/tb-ml": {
-	"id": "github/jodyphelan/tb-ml",
-	"title": "github/jodyphelan/tb-ml",
-	"url": " https://rseng.github.io/software/repository/github/jodyphelan/tb-ml",
-	"content": "A simple tool for creating machine learning antimicrobial resistance prediction pipelines using Docker containers for M. tuberculosis"
+	"github/brentp/mosdepth": {
+	"id": "github/brentp/mosdepth",
+	"title": "github/brentp/mosdepth",
+	"url": " https://rseng.github.io/software/repository/github/brentp/mosdepth",
+	"content": "fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing"
 	},
-	"github/nell-byler/cloudyfsps": {
-	"id": "github/nell-byler/cloudyfsps",
-	"title": "github/nell-byler/cloudyfsps",
-	"url": " https://rseng.github.io/software/repository/github/nell-byler/cloudyfsps",
-	"content": "Python interface between FSPS and Cloudy."
+	"github/brentp/cigar": {
+	"id": "github/brentp/cigar",
+	"title": "github/brentp/cigar",
+	"url": " https://rseng.github.io/software/repository/github/brentp/cigar",
+	"content": "simple library for dealing with SAM cigar strings"
 	},
-	"github/EESI/Complet-Plus": {
-	"id": "github/EESI/Complet-Plus",
-	"title": "github/EESI/Complet-Plus",
-	"url": " https://rseng.github.io/software/repository/github/EESI/Complet-Plus",
-	"content": "Complet-Plus by Rachel Nguyen and Drexel EESI Lab"
+	"github/brentp/smoove": {
+	"id": "github/brentp/smoove",
+	"title": "github/brentp/smoove",
+	"url": " https://rseng.github.io/software/repository/github/brentp/smoove",
+	"content": "structural variant calling and genotyping with existing tools, but, smoothly."
 	},
-	"github/cheginit/HyRiver": {
-	"id": "github/cheginit/HyRiver",
-	"title": "github/cheginit/HyRiver",
-	"url": " https://rseng.github.io/software/repository/github/cheginit/HyRiver",
-	"content": "A Python software stack for retrieving hydroclimate data from web services."
+	"github/brentp/geneimpacts": {
+	"id": "github/brentp/geneimpacts",
+	"title": "github/brentp/geneimpacts",
+	"url": " https://rseng.github.io/software/repository/github/brentp/geneimpacts",
+	"content": "prioritize effects of variant annotations from VEP, SnpEff, et al."
 	},
-	"github/morispi/LRez": {
-	"id": "github/morispi/LRez",
-	"title": "github/morispi/LRez",
-	"url": " https://rseng.github.io/software/repository/github/morispi/LRez",
-	"content": "Standalone tool and library allowing to work with barcoded linked-reads"
+	"github/brentp/gsort": {
+	"id": "github/brentp/gsort",
+	"title": "github/brentp/gsort",
+	"url": " https://rseng.github.io/software/repository/github/brentp/gsort",
+	"content": "sort genomic data"
 	},
-	"github/MelanieKahl/MechAnalyze": {
-	"id": "github/MelanieKahl/MechAnalyze",
-	"title": "github/MelanieKahl/MechAnalyze",
-	"url": " https://rseng.github.io/software/repository/github/MelanieKahl/MechAnalyze",
-	"content": "an algorithm for standardization and automation of unconfined compression test analysis"
+	"github/brentp/nim-lapper": {
+	"id": "github/brentp/nim-lapper",
+	"title": "github/brentp/nim-lapper",
+	"url": " https://rseng.github.io/software/repository/github/brentp/nim-lapper",
+	"content": "fast easy interval overlapping for nim-lang"
 	},
-	"github/pyccel/pyccel": {
-	"id": "github/pyccel/pyccel",
-	"title": "github/pyccel/pyccel",
-	"url": " https://rseng.github.io/software/repository/github/pyccel/pyccel",
-	"content": "Python extension language using accelerators"
+	"github/paumard/cubefit": {
+	"id": "github/paumard/cubefit",
+	"title": "github/paumard/cubefit",
+	"url": " https://rseng.github.io/software/repository/github/paumard/cubefit",
+	"content": "None"
 	},
-	"github/sbailey/empca": {
-	"id": "github/sbailey/empca",
-	"title": "github/sbailey/empca",
-	"url": " https://rseng.github.io/software/repository/github/sbailey/empca",
-	"content": "Principal Component Analysis (PCA) for Missing and/or Noisy Data"
+	"github/semiautomaticgit/SemiAutomaticClassificationPlugin": {
+	"id": "github/semiautomaticgit/SemiAutomaticClassificationPlugin",
+	"title": "github/semiautomaticgit/SemiAutomaticClassificationPlugin",
+	"url": " https://rseng.github.io/software/repository/github/semiautomaticgit/SemiAutomaticClassificationPlugin",
+	"content": "None"
 	},
-	"github/DataBiosphere/wdl-parsers": {
-	"id": "github/DataBiosphere/wdl-parsers",
-	"title": "github/DataBiosphere/wdl-parsers",
-	"url": " https://rseng.github.io/software/repository/github/DataBiosphere/wdl-parsers",
-	"content": "A package that provides the generated ANTLR4 WDL parsers for Python."
+	"github/Anirbancosmo/limpy": {
+	"id": "github/Anirbancosmo/limpy",
+	"title": "github/Anirbancosmo/limpy",
+	"url": " https://rseng.github.io/software/repository/github/Anirbancosmo/limpy",
+	"content": "A python package for multi-line intensity mapping"
 	},
-	"github/niosh-mining/obsplus": {
-	"id": "github/niosh-mining/obsplus",
-	"title": "github/niosh-mining/obsplus",
-	"url": " https://rseng.github.io/software/repository/github/niosh-mining/obsplus",
-	"content": "A Pandas-Centric ObsPy Expansion Pack"
+	"github/EISy-as-Py/hardy": {
+	"id": "github/EISy-as-Py/hardy",
+	"title": "github/EISy-as-Py/hardy",
+	"url": " https://rseng.github.io/software/repository/github/EISy-as-Py/hardy",
+	"content": "Handling Arbitrary Recognition of Data! y not?"
 	},
-	"github/matteobreschi/bajes": {
-	"id": "github/matteobreschi/bajes",
-	"title": "github/matteobreschi/bajes",
-	"url": " https://rseng.github.io/software/repository/github/matteobreschi/bajes",
-	"content": "Bayesian Jenaer software"
+	"github/davidgardenier/frbcat": {
+	"id": "github/davidgardenier/frbcat",
+	"title": "github/davidgardenier/frbcat",
+	"url": " https://rseng.github.io/software/repository/github/davidgardenier/frbcat",
+	"content": "Query Fast Radio Burst catalogues"
 	},
-	"github/damcb/tyssue": {
-	"id": "github/damcb/tyssue",
-	"title": "github/damcb/tyssue",
-	"url": " https://rseng.github.io/software/repository/github/damcb/tyssue",
-	"content": "An epithelium simulation library"
+	"github/davidgardenier/frbpoppy": {
+	"id": "github/davidgardenier/frbpoppy",
+	"title": "github/davidgardenier/frbpoppy",
+	"url": " https://rseng.github.io/software/repository/github/davidgardenier/frbpoppy",
+	"content": "Fast Radio Burst Population Synthesis in Python"
 	},
-	"github/lazear/sage": {
-	"id": "github/lazear/sage",
-	"title": "github/lazear/sage",
-	"url": " https://rseng.github.io/software/repository/github/lazear/sage",
-	"content": "Proteomics search &amp; quantification so fast that it feels like magic"
+	"github/frescigno/magpy_rv": {
+	"id": "github/frescigno/magpy_rv",
+	"title": "github/frescigno/magpy_rv",
+	"url": " https://rseng.github.io/software/repository/github/frescigno/magpy_rv",
+	"content": "Modelling Activity with Gaussian process regression in Python"
 	},
-	"github/ofionnad/radiowinds": {
-	"id": "github/ofionnad/radiowinds",
-	"title": "github/ofionnad/radiowinds",
-	"url": " https://rseng.github.io/software/repository/github/ofionnad/radiowinds",
-	"content": "Calculate the thermal bremsstrahlung emission from stellar winds"
+	"github/hansenjohnson/WhaleMap": {
+	"id": "github/hansenjohnson/WhaleMap",
+	"title": "github/hansenjohnson/WhaleMap",
+	"url": " https://rseng.github.io/software/repository/github/hansenjohnson/WhaleMap",
+	"content": "Collate and visualize whale survey results in the NW Atlantic"
 	},
-	"github/bootphon/phonemizer": {
-	"id": "github/bootphon/phonemizer",
-	"title": "github/bootphon/phonemizer",
-	"url": " https://rseng.github.io/software/repository/github/bootphon/phonemizer",
-	"content": "Simple text to phones converter for multiple languages"
+	"github/barricklab/pLannotate": {
+	"id": "github/barricklab/pLannotate",
+	"title": "github/barricklab/pLannotate",
+	"url": " https://rseng.github.io/software/repository/github/barricklab/pLannotate",
+	"content": "Webserver and command line tool for annotating engineered plasmids"
 	},
-	"github/sourmash-bio/sourmash": {
-	"id": "github/sourmash-bio/sourmash",
-	"title": "github/sourmash-bio/sourmash",
-	"url": " https://rseng.github.io/software/repository/github/sourmash-bio/sourmash",
-	"content": "Quickly search, compare, and analyze genomic and metagenomic data sets."
+	"github/mikejohnson51/AHGestimation": {
+	"id": "github/mikejohnson51/AHGestimation",
+	"title": "github/mikejohnson51/AHGestimation",
+	"url": " https://rseng.github.io/software/repository/github/mikejohnson51/AHGestimation",
+	"content": "Estimating robust, mass conserving AHG relationships"
 	},
-	"github/bsafdi/stellarWakes": {
-	"id": "github/bsafdi/stellarWakes",
-	"title": "github/bsafdi/stellarWakes",
-	"url": " https://rseng.github.io/software/repository/github/bsafdi/stellarWakes",
-	"content": "Python package for dark matter subhalo searches using stellar kinematic data"
+	"github/noraeisner/LATTE": {
+	"id": "github/noraeisner/LATTE",
+	"title": "github/noraeisner/LATTE",
+	"url": " https://rseng.github.io/software/repository/github/noraeisner/LATTE",
+	"content": "Lightcurve Analysis Tool for Transiting Exoplanet"
 	},
-	"github/mwhosek/extlaw_H18": {
-	"id": "github/mwhosek/extlaw_H18",
-	"title": "github/mwhosek/extlaw_H18",
-	"url": " https://rseng.github.io/software/repository/github/mwhosek/extlaw_H18",
-	"content": "Stand-alone python code to generate extinction law between 0.8 -- 2.2 microns, from Hosek+18"
+	"github/poldracklab/nitransforms": {
+	"id": "github/poldracklab/nitransforms",
+	"title": "github/poldracklab/nitransforms",
+	"url": " https://rseng.github.io/software/repository/github/poldracklab/nitransforms",
+	"content": "a standalone fork of nipy/nibabel#656"
 	},
-	"github/sterinaldi/FIGARO": {
-	"id": "github/sterinaldi/FIGARO",
-	"title": "github/sterinaldi/FIGARO",
-	"url": " https://rseng.github.io/software/repository/github/sterinaldi/FIGARO",
-	"content": "Fast Inference for GW Astronomy, Research and Observations"
+	"github/poldracklab/mriqc": {
+	"id": "github/poldracklab/mriqc",
+	"title": "github/poldracklab/mriqc",
+	"url": " https://rseng.github.io/software/repository/github/poldracklab/mriqc",
+	"content": "Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain"
 	},
-	"github/ericsteinbring/Special-Blurring": {
-	"id": "github/ericsteinbring/Special-Blurring",
-	"title": "github/ericsteinbring/Special-Blurring",
-	"url": " https://rseng.github.io/software/repository/github/ericsteinbring/Special-Blurring",
-	"content": "Calculates the effect of quantum-foam blurring, appropriate for the special gamma-ray burst GRB221009A."
+	"github/jczarnowski/DeepFactors": {
+	"id": "github/jczarnowski/DeepFactors",
+	"title": "github/jczarnowski/DeepFactors",
+	"url": " https://rseng.github.io/software/repository/github/jczarnowski/DeepFactors",
+	"content": "Real-Time Probabilistic Dense Monocular SLAM Using Compact Code Representation"
 	},
-	"github/ericsteinbring/World_Observatory": {
-	"id": "github/ericsteinbring/World_Observatory",
-	"title": "github/ericsteinbring/World_Observatory",
-	"url": " https://rseng.github.io/software/repository/github/ericsteinbring/World_Observatory",
-	"content": "World Observatory visualizes S/N-versus-cost tradeoffs for large optical/near-infrared telescopes."
+	"github/cschreib/egg": {
+	"id": "github/cschreib/egg",
+	"title": "github/cschreib/egg",
+	"url": " https://rseng.github.io/software/repository/github/cschreib/egg",
+	"content": "Tool to generate fake galaxy catalogs with realistic positions, morphologies and fluxes from the far-ultraviolet to the far-infrared."
 	},
-	"github/OpenDA-Association/OpenDA": {
-	"id": "github/OpenDA-Association/OpenDA",
-	"title": "github/OpenDA-Association/OpenDA",
-	"url": " https://rseng.github.io/software/repository/github/OpenDA-Association/OpenDA",
-	"content": "Open data assimilation toolbox"
+	"github/cadop/seg1d": {
+	"id": "github/cadop/seg1d",
+	"title": "github/cadop/seg1d",
+	"url": " https://rseng.github.io/software/repository/github/cadop/seg1d",
+	"content": "Automated segmentation of one-dimensional (1D) data"
 	},
-	"github/sauddy/GRINN": {
-	"id": "github/sauddy/GRINN",
-	"title": "github/sauddy/GRINN",
-	"url": " https://rseng.github.io/software/repository/github/sauddy/GRINN",
-	"content": "We solve hydrodynamical equation including self-gravitating using Physics Informed Neural Networks. We study Jeans instability in self-gravitating gas in star forming molecular clouds"
+	"github/yuguangchen1/KcwiKit": {
+	"id": "github/yuguangchen1/KcwiKit",
+	"title": "github/yuguangchen1/KcwiKit",
+	"url": " https://rseng.github.io/software/repository/github/yuguangchen1/KcwiKit",
+	"content": "Improving KCWI/KDERP pipeline."
 	},
-	"github/tkerscher/blast": {
-	"id": "github/tkerscher/blast",
-	"title": "github/tkerscher/blast",
-	"url": " https://rseng.github.io/software/repository/github/tkerscher/blast",
-	"content": "Synchrotron peak estimator for blazars"
+	"github/aiproteomics/aiproteomics": {
+	"id": "github/aiproteomics/aiproteomics",
+	"title": "github/aiproteomics/aiproteomics",
+	"url": " https://rseng.github.io/software/repository/github/aiproteomics/aiproteomics",
+	"content": "A package for MSMS spectral library prediction models from the field of (phospho-)proteomics, intended to facilitate the testing and comparison of different neural network architectures and existing models."
 	},
-	"github/wanpinglee/MOSAIK": {
-	"id": "github/wanpinglee/MOSAIK",
-	"title": "github/wanpinglee/MOSAIK",
-	"url": " https://rseng.github.io/software/repository/github/wanpinglee/MOSAIK",
-	"content": "reference-guided aligner for next-generation sequencing technologies"
+	"github/klee/klee": {
+	"id": "github/klee/klee",
+	"title": "github/klee/klee",
+	"url": " https://rseng.github.io/software/repository/github/klee/klee",
+	"content": "KLEE Symbolic Execution Engine"
 	},
-	"github/1054/Crab.Toolkit.michi2": {
-	"id": "github/1054/Crab.Toolkit.michi2",
-	"title": "github/1054/Crab.Toolkit.michi2",
-	"url": " https://rseng.github.io/software/repository/github/1054/Crab.Toolkit.michi2",
-	"content": "crab minimum chi2 toolkit"
+	"github/mc-imperial/jfs": {
+	"id": "github/mc-imperial/jfs",
+	"title": "github/mc-imperial/jfs",
+	"url": " https://rseng.github.io/software/repository/github/mc-imperial/jfs",
+	"content": "Constraint solver based on coverage-guided fuzzing"
 	},
-	"github/Alcampopiano/hypothesize": {
-	"id": "github/Alcampopiano/hypothesize",
-	"title": "github/Alcampopiano/hypothesize",
-	"url": " https://rseng.github.io/software/repository/github/Alcampopiano/hypothesize",
-	"content": "Robust statistics in Python"
+	"github/mc-imperial/gpuverify": {
+	"id": "github/mc-imperial/gpuverify",
+	"title": "github/mc-imperial/gpuverify",
+	"url": " https://rseng.github.io/software/repository/github/mc-imperial/gpuverify",
+	"content": "GPUVerify: a Verifier for GPU Kernels"
 	},
-	"github/tronsgaard/barycorr": {
-	"id": "github/tronsgaard/barycorr",
-	"title": "github/tronsgaard/barycorr",
-	"url": " https://rseng.github.io/software/repository/github/tronsgaard/barycorr",
-	"content": "Python interface for barycentric correction web applets"
+	"github/mc-imperial/multicore-test-harness": {
+	"id": "github/mc-imperial/multicore-test-harness",
+	"title": "github/mc-imperial/multicore-test-harness",
+	"url": " https://rseng.github.io/software/repository/github/mc-imperial/multicore-test-harness",
+	"content": "A multicore microprocessor test harness for measuring interference"
 	},
-	"github/mcataneo/mochi_class_public": {
-	"id": "github/mcataneo/mochi_class_public",
-	"title": "github/mcataneo/mochi_class_public",
-	"url": " https://rseng.github.io/software/repository/github/mcataneo/mochi_class_public",
-	"content": "None"
+	"github/patkel/big-macs-calibrate": {
+	"id": "github/patkel/big-macs-calibrate",
+	"title": "github/patkel/big-macs-calibrate",
+	"url": " https://rseng.github.io/software/repository/github/patkel/big-macs-calibrate",
+	"content": "Automatically exported from code.google.com/p/big-macs-calibrate"
 	},
-	"github/gridap/GridapSolvers.jl": {
-	"id": "github/gridap/GridapSolvers.jl",
-	"title": "github/gridap/GridapSolvers.jl",
-	"url": " https://rseng.github.io/software/repository/github/gridap/GridapSolvers.jl",
-	"content": "Solvers and preconditioners for the Gridap ecosystem."
+	"github/tikk3r/legacystamps": {
+	"id": "github/tikk3r/legacystamps",
+	"title": "github/tikk3r/legacystamps",
+	"url": " https://rseng.github.io/software/repository/github/tikk3r/legacystamps",
+	"content": "A tiny Python module to allow easy retrieval of a cutout from the Legacy survey."
 	},
-	"github/gridap/Gridap.jl": {
-	"id": "github/gridap/Gridap.jl",
-	"title": "github/gridap/Gridap.jl",
-	"url": " https://rseng.github.io/software/repository/github/gridap/Gridap.jl",
-	"content": "Grid-based approximation of partial differential equations in Julia"
+	"github/tikk3r/lofar-h5plot": {
+	"id": "github/tikk3r/lofar-h5plot",
+	"title": "github/tikk3r/lofar-h5plot",
+	"url": " https://rseng.github.io/software/repository/github/tikk3r/lofar-h5plot",
+	"content": "A small GUI for plotting H5Parms produced during LOFAR calibration."
 	},
-	"github/samhforbes/PupillometryR": {
-	"id": "github/samhforbes/PupillometryR",
-	"title": "github/samhforbes/PupillometryR",
-	"url": " https://rseng.github.io/software/repository/github/samhforbes/PupillometryR",
-	"content": "An R package for preparing and analysing pupillometry data"
+	"github/bd-j/forcepho": {
+	"id": "github/bd-j/forcepho",
+	"title": "github/bd-j/forcepho",
+	"url": " https://rseng.github.io/software/repository/github/bd-j/forcepho",
+	"content": "Generative modeling galaxy photometry for JWST"
 	},
-	"github/creanero/locus": {
-	"id": "github/creanero/locus",
-	"title": "github/creanero/locus",
-	"url": " https://rseng.github.io/software/repository/github/creanero/locus",
-	"content": "code and script for Locus Algorithm"
+	"github/bd-j/prospector": {
+	"id": "github/bd-j/prospector",
+	"title": "github/bd-j/prospector",
+	"url": " https://rseng.github.io/software/repository/github/bd-j/prospector",
+	"content": "Python code for Stellar Population Inference from Spectra and SEDs"
 	},
-	"github/ernewton/tellrv": {
-	"id": "github/ernewton/tellrv",
-	"title": "github/ernewton/tellrv",
-	"url": " https://rseng.github.io/software/repository/github/ernewton/tellrv",
-	"content": "Radial velocities for low-resolution NIR spectra using telluric features to provide absolute wavelength calibration"
+	"github/bd-j/sedpy": {
+	"id": "github/bd-j/sedpy",
+	"title": "github/bd-j/sedpy",
+	"url": " https://rseng.github.io/software/repository/github/bd-j/sedpy",
+	"content": "Utilities for astronomical spectral energy distributions"
 	},
-	"github/Open-Minds-Lab/MRdataset": {
-	"id": "github/Open-Minds-Lab/MRdataset",
-	"title": "github/Open-Minds-Lab/MRdataset",
-	"url": " https://rseng.github.io/software/repository/github/Open-Minds-Lab/MRdataset",
-	"content": "MRdataset : unified interface to various neuroimaging dataset formats"
+	"github/mikegrudic/pytreegrav": {
+	"id": "github/mikegrudic/pytreegrav",
+	"title": "github/mikegrudic/pytreegrav",
+	"url": " https://rseng.github.io/software/repository/github/mikegrudic/pytreegrav",
+	"content": "Fast N-body gravitational force and potential in Python"
 	},
-	"github/datngu/Circall": {
-	"id": "github/datngu/Circall",
-	"title": "github/datngu/Circall",
-	"url": " https://rseng.github.io/software/repository/github/datngu/Circall",
-	"content": "Circall is a novel method to discover circular RNA from paired-end RNA sequencing data"
+	"github/mikegrudic/MakeCloud": {
+	"id": "github/mikegrudic/MakeCloud",
+	"title": "github/mikegrudic/MakeCloud",
+	"url": " https://rseng.github.io/software/repository/github/mikegrudic/MakeCloud",
+	"content": "MakeCloud: Make turbulent GMC initial conditions for GIZMO"
 	},
-	"github/BlueBrain/BlueCelluLab": {
-	"id": "github/BlueBrain/BlueCelluLab",
-	"title": "github/BlueBrain/BlueCelluLab",
-	"url": " https://rseng.github.io/software/repository/github/BlueBrain/BlueCelluLab",
-	"content": "Biologically detailed neural network simulations and analysis API"
+	"github/bwinkel/cygrid": {
+	"id": "github/bwinkel/cygrid",
+	"title": "github/bwinkel/cygrid",
+	"url": " https://rseng.github.io/software/repository/github/bwinkel/cygrid",
+	"content": "Cygrid is a cython-powered convolution-based gridding module for astronomy"
 	},
-	"github/HeracleBT/vEMstitch": {
-	"id": "github/HeracleBT/vEMstitch",
-	"title": "github/HeracleBT/vEMstitch",
-	"url": " https://rseng.github.io/software/repository/github/HeracleBT/vEMstitch",
-	"content": "None"
+	"github/TRIQS/solid_dmft": {
+	"id": "github/TRIQS/solid_dmft",
+	"title": "github/TRIQS/solid_dmft",
+	"url": " https://rseng.github.io/software/repository/github/TRIQS/solid_dmft",
+	"content": "solid_dmft is a versatile python wrapper to perform DFT+DMFT calculations utilizing the TRIQS software library."
 	},
-	"github/aimalz/qp": {
-	"id": "github/aimalz/qp",
-	"title": "github/aimalz/qp",
-	"url": " https://rseng.github.io/software/repository/github/aimalz/qp",
-	"content": "Quantile Parametrization for probability distribution functions module"
+	"github/nf-core/mag": {
+	"id": "github/nf-core/mag",
+	"title": "github/nf-core/mag",
+	"url": " https://rseng.github.io/software/repository/github/nf-core/mag",
+	"content": "Assembly and binning of metagenomes"
 	},
-	"github/tyo-nu/MINE-app": {
-	"id": "github/tyo-nu/MINE-app",
-	"title": "github/tyo-nu/MINE-app",
-	"url": " https://rseng.github.io/software/repository/github/tyo-nu/MINE-app",
-	"content": "Web application for the MINE databases"
+	"github/nf-core/sarek": {
+	"id": "github/nf-core/sarek",
+	"title": "github/nf-core/sarek",
+	"url": " https://rseng.github.io/software/repository/github/nf-core/sarek",
+	"content": "Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing"
 	},
-	"github/tyo-nu/pickaxe_paper": {
-	"id": "github/tyo-nu/pickaxe_paper",
-	"title": "github/tyo-nu/pickaxe_paper",
-	"url": " https://rseng.github.io/software/repository/github/tyo-nu/pickaxe_paper",
-	"content": "None"
+	"github/nf-core/viralrecon": {
+	"id": "github/nf-core/viralrecon",
+	"title": "github/nf-core/viralrecon",
+	"url": " https://rseng.github.io/software/repository/github/nf-core/viralrecon",
+	"content": "Assembly and intrahost/low-frequency variant calling for viral samples"
 	},
-	"github/syasini/AstroPaint": {
-	"id": "github/syasini/AstroPaint",
-	"title": "github/syasini/AstroPaint",
-	"url": " https://rseng.github.io/software/repository/github/syasini/AstroPaint",
-	"content": "A python package for creating mock maps of astrophysical signals from a halo catalog"
+	"github/akashdhruv/BoxKit": {
+	"id": "github/akashdhruv/BoxKit",
+	"title": "github/akashdhruv/BoxKit",
+	"url": " https://rseng.github.io/software/repository/github/akashdhruv/BoxKit",
+	"content": "A Python library to manage analysis of block-structured simulation datasets."
 	},
-	"github/mzkhalid039/DWBuilder": {
-	"id": "github/mzkhalid039/DWBuilder",
-	"title": "github/mzkhalid039/DWBuilder",
-	"url": " https://rseng.github.io/software/repository/github/mzkhalid039/DWBuilder",
-	"content": "Ferroelectric/Ferroelastic domain wall builder"
+	"github/shinichiroando/sashimi-w": {
+	"id": "github/shinichiroando/sashimi-w",
+	"title": "github/shinichiroando/sashimi-w",
+	"url": " https://rseng.github.io/software/repository/github/shinichiroando/sashimi-w",
+	"content": "None"
 	},
-	"github/kiyo-masui/bitshuffle": {
-	"id": "github/kiyo-masui/bitshuffle",
-	"title": "github/kiyo-masui/bitshuffle",
-	"url": " https://rseng.github.io/software/repository/github/kiyo-masui/bitshuffle",
-	"content": "Filter for improving compression of typed binary data."
+	"github/shinichiroando/sashimi-c": {
+	"id": "github/shinichiroando/sashimi-c",
+	"title": "github/shinichiroando/sashimi-c",
+	"url": " https://rseng.github.io/software/repository/github/shinichiroando/sashimi-c",
+	"content": "None"
 	},
 	"github/veragluscevic/dmdd": {
 	"id": "github/veragluscevic/dmdd",
@@ -26241,5075 +26073,5201 @@
 	"url": " https://rseng.github.io/software/repository/github/veragluscevic/dmdd",
 	"content": "A python package that enables simple simulation and Bayesian posterior analysis of nuclear-recoil data from dark matter direct detection experiments for a wide variety of theories of dark matter-nucleon interactions."
 	},
-	"github/neuroneural/brainchop": {
-	"id": "github/neuroneural/brainchop",
-	"title": "github/neuroneural/brainchop",
-	"url": " https://rseng.github.io/software/repository/github/neuroneural/brainchop",
-	"content": "Brainchop: In-browser 3D MRI rendering and segmentation"
+	"github/cov-lineages/pangoLEARN": {
+	"id": "github/cov-lineages/pangoLEARN",
+	"title": "github/cov-lineages/pangoLEARN",
+	"url": " https://rseng.github.io/software/repository/github/cov-lineages/pangoLEARN",
+	"content": "Store of the trained model for pangolin to access."
 	},
-	"github/chadagreene/Tide-Model-Driver": {
-	"id": "github/chadagreene/Tide-Model-Driver",
-	"title": "github/chadagreene/Tide-Model-Driver",
-	"url": " https://rseng.github.io/software/repository/github/chadagreene/Tide-Model-Driver",
-	"content": "Tide Model Driver for MATLAB, version 3.0"
+	"github/cov-lineages/pangolin": {
+	"id": "github/cov-lineages/pangolin",
+	"title": "github/cov-lineages/pangolin",
+	"url": " https://rseng.github.io/software/repository/github/cov-lineages/pangolin",
+	"content": "Software package for assigning SARS-CoV-2 genome sequences to global lineages."
 	},
-	"github/Dailer/RCausticMass": {
-	"id": "github/Dailer/RCausticMass",
-	"title": "github/Dailer/RCausticMass",
-	"url": " https://rseng.github.io/software/repository/github/Dailer/RCausticMass",
-	"content": "Caustic Mass Estimator for Galaxy Clusters"
+	"github/nu-radio/NuRadioMC": {
+	"id": "github/nu-radio/NuRadioMC",
+	"title": "github/nu-radio/NuRadioMC",
+	"url": " https://rseng.github.io/software/repository/github/nu-radio/NuRadioMC",
+	"content": "A Monte Carlo simulation package for radio neutrino detectors"
 	},
-	"github/lemene/PECAT": {
-	"id": "github/lemene/PECAT",
-	"title": "github/lemene/PECAT",
-	"url": " https://rseng.github.io/software/repository/github/lemene/PECAT",
-	"content": "PECAT, a phased error correct and assembly tool"
+	"github/sciris/sciris": {
+	"id": "github/sciris/sciris",
+	"title": "github/sciris/sciris",
+	"url": " https://rseng.github.io/software/repository/github/sciris/sciris",
+	"content": "Fast, flexible tools to simplify scientific Python"
 	},
-	"github/joshspeagle/dynesty": {
-	"id": "github/joshspeagle/dynesty",
-	"title": "github/joshspeagle/dynesty",
-	"url": " https://rseng.github.io/software/repository/github/joshspeagle/dynesty",
-	"content": "Dynamic Nested Sampling package for computing Bayesian posteriors and evidences"
+	"github/AlexandrosAntoniadis/ODUSSEAS": {
+	"id": "github/AlexandrosAntoniadis/ODUSSEAS",
+	"title": "github/AlexandrosAntoniadis/ODUSSEAS",
+	"url": " https://rseng.github.io/software/repository/github/AlexandrosAntoniadis/ODUSSEAS",
+	"content": "None"
 	},
-	"github/rainwoodman/bigfile": {
-	"id": "github/rainwoodman/bigfile",
-	"title": "github/rainwoodman/bigfile",
-	"url": " https://rseng.github.io/software/repository/github/rainwoodman/bigfile",
-	"content": "A reproducible massively parallel IO library for hierarchical data"
+	"github/astrockragh/Mangrove": {
+	"id": "github/astrockragh/Mangrove",
+	"title": "github/astrockragh/Mangrove",
+	"url": " https://rseng.github.io/software/repository/github/astrockragh/Mangrove",
+	"content": "Using Graph Neural Networks to regress baryonic properties directly from full dark matter merger trees."
 	},
-	"github/smaret/thindisk": {
-	"id": "github/smaret/thindisk",
-	"title": "github/smaret/thindisk",
-	"url": " https://rseng.github.io/software/repository/github/smaret/thindisk",
-	"content": "Compute the line emission from a geometrically thin protoplanetary disk"
+	"github/jupyterlab/jupyterlab": {
+	"id": "github/jupyterlab/jupyterlab",
+	"title": "github/jupyterlab/jupyterlab",
+	"url": " https://rseng.github.io/software/repository/github/jupyterlab/jupyterlab",
+	"content": "JupyterLab computational environment."
 	},
-	"github/smaret/astrochem": {
-	"id": "github/smaret/astrochem",
-	"title": "github/smaret/astrochem",
-	"url": " https://rseng.github.io/software/repository/github/smaret/astrochem",
-	"content": "A code to compute the abundances of chemical species in the interstellar medium"
+	"github/Sm00thix/IKPLS": {
+	"id": "github/Sm00thix/IKPLS",
+	"title": "github/Sm00thix/IKPLS",
+	"url": " https://rseng.github.io/software/repository/github/Sm00thix/IKPLS",
+	"content": "Fast CPU and GPU Python implementations of Improved Kernel PLS by Dayal and MacGregor (1997) and Shortcutting Cross-Validation by Engstrøm (2024)."
 	},
-	"github/yatisht/usher": {
-	"id": "github/yatisht/usher",
-	"title": "github/yatisht/usher",
-	"url": " https://rseng.github.io/software/repository/github/yatisht/usher",
-	"content": "Ultrafast Sample Placement on Existing Trees"
+	"github/bioAI-Oslo/Spikeometric": {
+	"id": "github/bioAI-Oslo/Spikeometric",
+	"title": "github/bioAI-Oslo/Spikeometric",
+	"url": " https://rseng.github.io/software/repository/github/bioAI-Oslo/Spikeometric",
+	"content": "Spiking Neural Network Simulator based on Generalized Linear Models"
 	},
-	"github/padster/pyNeuroTrace": {
-	"id": "github/padster/pyNeuroTrace",
-	"title": "github/padster/pyNeuroTrace",
-	"url": " https://rseng.github.io/software/repository/github/padster/pyNeuroTrace",
-	"content": "Python code for processing neural timeseries"
+	"github/mes5k/amap-align": {
+	"id": "github/mes5k/amap-align",
+	"title": "github/mes5k/amap-align",
+	"url": " https://rseng.github.io/software/repository/github/mes5k/amap-align",
+	"content": "Automatically exported from code.google.com/p/amap-align"
 	},
-	"github/scottleedavis/googleearthtoolbox": {
-	"id": "github/scottleedavis/googleearthtoolbox",
-	"title": "github/scottleedavis/googleearthtoolbox",
-	"url": " https://rseng.github.io/software/repository/github/scottleedavis/googleearthtoolbox",
-	"content": "Leverages the intuitive interactive virtual globe interface provided by Google Earth, providing programatic tools useful in spatio-temporal analysis."
+	"github/elsoroka/Satisfiability.jl": {
+	"id": "github/elsoroka/Satisfiability.jl",
+	"title": "github/elsoroka/Satisfiability.jl",
+	"url": " https://rseng.github.io/software/repository/github/elsoroka/Satisfiability.jl",
+	"content": "Specify satisfiability modulo theories problems in Julia and use the SMT-LIB format to interact with SMT solvers."
 	},
-	"github/FZJ-PGI-12/QAOA.jl": {
-	"id": "github/FZJ-PGI-12/QAOA.jl",
-	"title": "github/FZJ-PGI-12/QAOA.jl",
-	"url": " https://rseng.github.io/software/repository/github/FZJ-PGI-12/QAOA.jl",
-	"content": "None"
+	"github/precice/micro-manager": {
+	"id": "github/precice/micro-manager",
+	"title": "github/precice/micro-manager",
+	"url": " https://rseng.github.io/software/repository/github/precice/micro-manager",
+	"content": "A manager tool to facilitate two-scale coupling in multi-physics simulations using preCICE."
 	},
-	"github/nhejazi/medoutcon": {
-	"id": "github/nhejazi/medoutcon",
-	"title": "github/nhejazi/medoutcon",
-	"url": " https://rseng.github.io/software/repository/github/nhejazi/medoutcon",
-	"content": ":package: R/medoutcon: Efficient Causal Mediation Analysis with Natural and Interventional Direct/Indirect Effects"
+	"github/precice/aste": {
+	"id": "github/precice/aste",
+	"title": "github/precice/aste",
+	"url": " https://rseng.github.io/software/repository/github/precice/aste",
+	"content": "Artificial Solver Testing Environment"
 	},
-	"github/nhejazi/haldensify": {
-	"id": "github/nhejazi/haldensify",
-	"title": "github/nhejazi/haldensify",
-	"url": " https://rseng.github.io/software/repository/github/nhejazi/haldensify",
-	"content": ":package: R/haldensify: Highly Adaptive Lasso Conditional Density Estimation"
+	"github/popgenmethods/smcpp": {
+	"id": "github/popgenmethods/smcpp",
+	"title": "github/popgenmethods/smcpp",
+	"url": " https://rseng.github.io/software/repository/github/popgenmethods/smcpp",
+	"content": "SMC++ infers population history from whole-genome sequence data."
 	},
-	"github/nhejazi/txshift": {
-	"id": "github/nhejazi/txshift",
-	"title": "github/nhejazi/txshift",
-	"url": " https://rseng.github.io/software/repository/github/nhejazi/txshift",
-	"content": ":package: :game_die: R/txshift: Efficient Estimation of the Causal Effects of Stochastic Interventions, with Two-Phase Sampling Corrections"
+	"github/wouterpeere/GHEtool": {
+	"id": "github/wouterpeere/GHEtool",
+	"title": "github/wouterpeere/GHEtool",
+	"url": " https://rseng.github.io/software/repository/github/wouterpeere/GHEtool",
+	"content": "GHEtool is an open-source tool for borefield sizing and ground temperature evolution plotting."
 	},
-	"github/acerbilab/pybads": {
-	"id": "github/acerbilab/pybads",
-	"title": "github/acerbilab/pybads",
-	"url": " https://rseng.github.io/software/repository/github/acerbilab/pybads",
-	"content": "PyBADS: Bayesian Adaptive Direct Search optimization algorithm for model fitting in Python"
+	"github/SouthGreenPlatform/PyRice": {
+	"id": "github/SouthGreenPlatform/PyRice",
+	"title": "github/SouthGreenPlatform/PyRice",
+	"url": " https://rseng.github.io/software/repository/github/SouthGreenPlatform/PyRice",
+	"content": "PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a smart query system which fits the computing resources to optimize the query speed."
 	},
-	"github/aabdurrouf/piXedfit": {
-	"id": "github/aabdurrouf/piXedfit",
-	"title": "github/aabdurrouf/piXedfit",
-	"url": " https://rseng.github.io/software/repository/github/aabdurrouf/piXedfit",
-	"content": "piXedfit is a Python package designed for analyzing spatially resolved SEDs of galaxies  "
+	"github/toros-astro/astroalign-legacy": {
+	"id": "github/toros-astro/astroalign-legacy",
+	"title": "github/toros-astro/astroalign-legacy",
+	"url": " https://rseng.github.io/software/repository/github/toros-astro/astroalign-legacy",
+	"content": "A tool to align astronomical images based on asterism matching"
 	},
-	"github/SJTU-CGM/ivTerm": {
-	"id": "github/SJTU-CGM/ivTerm",
-	"title": "github/SJTU-CGM/ivTerm",
-	"url": " https://rseng.github.io/software/repository/github/SJTU-CGM/ivTerm",
-	"content": "None"
+	"github/toros-astro/corral": {
+	"id": "github/toros-astro/corral",
+	"title": "github/toros-astro/corral",
+	"url": " https://rseng.github.io/software/repository/github/toros-astro/corral",
+	"content": "The Powerful Pipeline Framework"
 	},
-	"github/hajimes/mmh3": {
-	"id": "github/hajimes/mmh3",
-	"title": "github/hajimes/mmh3",
-	"url": " https://rseng.github.io/software/repository/github/hajimes/mmh3",
-	"content": "Python extension for MurmurHash (MurmurHash3), a set of fast and robust hash functions."
+	"github/aibhleog/baryon-sweep": {
+	"id": "github/aibhleog/baryon-sweep",
+	"title": "github/aibhleog/baryon-sweep",
+	"url": " https://rseng.github.io/software/repository/github/aibhleog/baryon-sweep",
+	"content": "a custom outlier rejection algorithm for JWST/NIRSpec IFS data, described in Hutchison et al. (submitted to PASP)"
 	},
-	"github/DLR-RM/BlenderProc": {
-	"id": "github/DLR-RM/BlenderProc",
-	"title": "github/DLR-RM/BlenderProc",
-	"url": " https://rseng.github.io/software/repository/github/DLR-RM/BlenderProc",
-	"content": "A procedural Blender pipeline for photorealistic training image generation"
+	"github/splicebox/PsiCLASS": {
+	"id": "github/splicebox/PsiCLASS",
+	"title": "github/splicebox/PsiCLASS",
+	"url": " https://rseng.github.io/software/repository/github/splicebox/PsiCLASS",
+	"content": "Simultaneous multi-sample transcript assembler for RNA-seq data"
 	},
-	"github/AbeelLab/lorikeet": {
-	"id": "github/AbeelLab/lorikeet",
-	"title": "github/AbeelLab/lorikeet",
-	"url": " https://rseng.github.io/software/repository/github/AbeelLab/lorikeet",
-	"content": "Digital spoligotyping of MTB strains from Illumina read data"
+	"github/lengoctram/DustPOL-py": {
+	"id": "github/lengoctram/DustPOL-py",
+	"title": "github/lengoctram/DustPOL-py",
+	"url": " https://rseng.github.io/software/repository/github/lengoctram/DustPOL-py",
+	"content": "numerical modelling (source code)"
 	},
-	"github/hallamlab/TreeSAPP": {
-	"id": "github/hallamlab/TreeSAPP",
-	"title": "github/hallamlab/TreeSAPP",
-	"url": " https://rseng.github.io/software/repository/github/hallamlab/TreeSAPP",
-	"content": "A Python package for gene-centric taxonomic and functional classification using phylogenetic placement"
+	"github/biocore/emperor": {
+	"id": "github/biocore/emperor",
+	"title": "github/biocore/emperor",
+	"url": " https://rseng.github.io/software/repository/github/biocore/emperor",
+	"content": "Emperor a tool for the analysis and visualization of large microbial ecology datasets"
 	},
-	"github/FredHutch/SEACR": {
-	"id": "github/FredHutch/SEACR",
-	"title": "github/FredHutch/SEACR",
-	"url": " https://rseng.github.io/software/repository/github/FredHutch/SEACR",
-	"content": "SEACR: Sparse Enrichment Analysis for CUT&amp;RUN"
+	"github/biocore/unifrac-binaries": {
+	"id": "github/biocore/unifrac-binaries",
+	"title": "github/biocore/unifrac-binaries",
+	"url": " https://rseng.github.io/software/repository/github/biocore/unifrac-binaries",
+	"content": "Fast phylogenetic diversity calculations"
 	},
-	"github/furrer-lab/abn": {
-	"id": "github/furrer-lab/abn",
-	"title": "github/furrer-lab/abn",
-	"url": " https://rseng.github.io/software/repository/github/furrer-lab/abn",
-	"content": "Bayesian network analysis in R"
+	"github/biocore/deblur": {
+	"id": "github/biocore/deblur",
+	"title": "github/biocore/deblur",
+	"url": " https://rseng.github.io/software/repository/github/biocore/deblur",
+	"content": "Deblur is a greedy deconvolution algorithm based on known read error profiles."
 	},
-	"github/Single-Cell-Graph-Learning/scSGL": {
-	"id": "github/Single-Cell-Graph-Learning/scSGL",
-	"title": "github/Single-Cell-Graph-Learning/scSGL",
-	"url": " https://rseng.github.io/software/repository/github/Single-Cell-Graph-Learning/scSGL",
-	"content": "Signed Graph Learning for single cell RNA-seq data"
+	"github/biocore/unifrac": {
+	"id": "github/biocore/unifrac",
+	"title": "github/biocore/unifrac",
+	"url": " https://rseng.github.io/software/repository/github/biocore/unifrac",
+	"content": "high-performance phylogenetic diversity calculations (dev)"
+	},
+	"github/biocore/sortmerna": {
+	"id": "github/biocore/sortmerna",
+	"title": "github/biocore/sortmerna",
+	"url": " https://rseng.github.io/software/repository/github/biocore/sortmerna",
+	"content": "SortMeRNA: next-generation sequence filtering and alignment tool"
+	},
+	"github/biocore/scikit-bio": {
+	"id": "github/biocore/scikit-bio",
+	"title": "github/biocore/scikit-bio",
+	"url": " https://rseng.github.io/software/repository/github/biocore/scikit-bio",
+	"content": "scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics."
+	},
+	"github/fmichel/TurtleKit": {
+	"id": "github/fmichel/TurtleKit",
+	"title": "github/fmichel/TurtleKit",
+	"url": " https://rseng.github.io/software/repository/github/fmichel/TurtleKit",
+	"content": "TurtleKit 3 - Multi-Agent Based Simulation Platform"
+	},
+	"github/fmichel/MaDKit": {
+	"id": "github/fmichel/MaDKit",
+	"title": "github/fmichel/MaDKit",
+	"url": " https://rseng.github.io/software/repository/github/fmichel/MaDKit",
+	"content": "MultiAgent Development Kit - version 5"
+	},
+	"github/computational-chemical-biology/ChemWalker": {
+	"id": "github/computational-chemical-biology/ChemWalker",
+	"title": "github/computational-chemical-biology/ChemWalker",
+	"url": " https://rseng.github.io/software/repository/github/computational-chemical-biology/ChemWalker",
+	"content": "None"
+	},
+	"github/gear-genomics/tracy": {
+	"id": "github/gear-genomics/tracy",
+	"title": "github/gear-genomics/tracy",
+	"url": " https://rseng.github.io/software/repository/github/gear-genomics/tracy",
+	"content": "Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files"
+	},
+	"github/gear-genomics/dicey": {
+	"id": "github/gear-genomics/dicey",
+	"title": "github/gear-genomics/dicey",
+	"url": " https://rseng.github.io/software/repository/github/gear-genomics/dicey",
+	"content": "In-silico PCR, primer design and padlock design for in-situ sequencing"
 	},
-	"github/lkreidberg/batman": {
-	"id": "github/lkreidberg/batman",
-	"title": "github/lkreidberg/batman",
-	"url": " https://rseng.github.io/software/repository/github/lkreidberg/batman",
-	"content": "Fast transit light curves models in Python."
+	"github/ebmonson/2DFFTUtils-Module": {
+	"id": "github/ebmonson/2DFFTUtils-Module",
+	"title": "github/ebmonson/2DFFTUtils-Module",
+	"url": " https://rseng.github.io/software/repository/github/ebmonson/2DFFTUtils-Module",
+	"content": "A Python module implementation of some tasks associated with measuring spiral galaxy pitch angle with 2DFFT. To be merged into the 2dfft_utils repository at a later date. TODO: Rename package and repository to SpiralUtils."
 	},
-	"github/james-m-osborn/astrosat": {
-	"id": "github/james-m-osborn/astrosat",
-	"title": "github/james-m-osborn/astrosat",
-	"url": " https://rseng.github.io/software/repository/github/james-m-osborn/astrosat",
-	"content": "None"
+	"github/robashaw/libecpint": {
+	"id": "github/robashaw/libecpint",
+	"title": "github/robashaw/libecpint",
+	"url": " https://rseng.github.io/software/repository/github/robashaw/libecpint",
+	"content": "A C++ library for the efficient evaluation of integrals over effective core potentials."
 	},
-	"github/FengTaoSMU/MOBFinder": {
-	"id": "github/FengTaoSMU/MOBFinder",
-	"title": "github/FengTaoSMU/MOBFinder",
-	"url": " https://rseng.github.io/software/repository/github/FengTaoSMU/MOBFinder",
-	"content": "MOB typing for plasmid metagenomic fragments"
+	"github/Gaius-Augustus/GALBA": {
+	"id": "github/Gaius-Augustus/GALBA",
+	"title": "github/Gaius-Augustus/GALBA",
+	"url": " https://rseng.github.io/software/repository/github/Gaius-Augustus/GALBA",
+	"content": "GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from a closely related species are available."
 	},
-	"github/pepkit/geofetch": {
-	"id": "github/pepkit/geofetch",
-	"title": "github/pepkit/geofetch",
-	"url": " https://rseng.github.io/software/repository/github/pepkit/geofetch",
-	"content": "Builds a PEP from SRA or GEO accessions"
+	"github/Gaius-Augustus/BRAKER": {
+	"id": "github/Gaius-Augustus/BRAKER",
+	"title": "github/Gaius-Augustus/BRAKER",
+	"url": " https://rseng.github.io/software/repository/github/Gaius-Augustus/BRAKER",
+	"content": "BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes"
 	},
-	"github/rabrahm/ceres": {
-	"id": "github/rabrahm/ceres",
-	"title": "github/rabrahm/ceres",
-	"url": " https://rseng.github.io/software/repository/github/rabrahm/ceres",
-	"content": "A set of pipelines and routines for echelle spectrographs"
+	"github/Gaius-Augustus/Tiberius": {
+	"id": "github/Gaius-Augustus/Tiberius",
+	"title": "github/Gaius-Augustus/Tiberius",
+	"url": " https://rseng.github.io/software/repository/github/Gaius-Augustus/Tiberius",
+	"content": "deep learning gene finder"
 	},
-	"github/rabrahm/zaspe": {
-	"id": "github/rabrahm/zaspe",
-	"title": "github/rabrahm/zaspe",
-	"url": " https://rseng.github.io/software/repository/github/rabrahm/zaspe",
-	"content": "A Code to Measure Stellar Atmospheric Parameters and their Covariance from Spectra"
+	"github/mlower/rmnest": {
+	"id": "github/mlower/rmnest",
+	"title": "github/mlower/rmnest",
+	"url": " https://rseng.github.io/software/repository/github/mlower/rmnest",
+	"content": "A standard (and generalised) rotation measures fitting package written in Python."
 	},
-	"github/martinfleis/clustergram": {
-	"id": "github/martinfleis/clustergram",
-	"title": "github/martinfleis/clustergram",
-	"url": " https://rseng.github.io/software/repository/github/martinfleis/clustergram",
-	"content": "Clustergram - Visualization and diagnostics for cluster analysis in Python"
+	"github/mendezVKI/MODULO": {
+	"id": "github/mendezVKI/MODULO",
+	"title": "github/mendezVKI/MODULO",
+	"url": " https://rseng.github.io/software/repository/github/mendezVKI/MODULO",
+	"content": "MODULO (MODal mULtiscale pOd) is a software developed at the von Karman Institute to perform Multiscale Modal Analysis of numerical and experimental data using the mPOD. "
 	},
-	"github/lofar-astron/DP3": {
-	"id": "github/lofar-astron/DP3",
-	"title": "github/lofar-astron/DP3",
-	"url": " https://rseng.github.io/software/repository/github/lofar-astron/DP3",
-	"content": "DP3: streaming processing pipeline for radio interferometric data"
+	"github/brsynth/rp2paths": {
+	"id": "github/brsynth/rp2paths",
+	"title": "github/brsynth/rp2paths",
+	"url": " https://rseng.github.io/software/repository/github/brsynth/rp2paths",
+	"content": "RetroPath2.0 to pathways"
 	},
-	"github/lofar-astron/RMextract": {
-	"id": "github/lofar-astron/RMextract",
-	"title": "github/lofar-astron/RMextract",
-	"url": " https://rseng.github.io/software/repository/github/lofar-astron/RMextract",
-	"content": "extract TEC, vTEC, Earthmagnetic field and Rotation Measures from GPS and WMM data for radio interferometry observations "
+	"github/gilestrolab/ethoscope": {
+	"id": "github/gilestrolab/ethoscope",
+	"title": "github/gilestrolab/ethoscope",
+	"url": " https://rseng.github.io/software/repository/github/gilestrolab/ethoscope",
+	"content": "a platform from monitoring animal behaviour in real time from a raspberry pi"
 	},
-	"github/Varnani/pywd2015-qt5": {
-	"id": "github/Varnani/pywd2015-qt5",
-	"title": "github/Varnani/pywd2015-qt5",
-	"url": " https://rseng.github.io/software/repository/github/Varnani/pywd2015-qt5",
-	"content": "A Qt5 GUI written in Python for Wilson - Devinney eclipsing binary modeling software."
+	"github/gilestrolab/pySolo": {
+	"id": "github/gilestrolab/pySolo",
+	"title": "github/gilestrolab/pySolo",
+	"url": " https://rseng.github.io/software/repository/github/gilestrolab/pySolo",
+	"content": "A software for sleep analysis in Drosophila"
 	},
-	"github/shandley/hecatomb": {
-	"id": "github/shandley/hecatomb",
-	"title": "github/shandley/hecatomb",
-	"url": " https://rseng.github.io/software/repository/github/shandley/hecatomb",
-	"content": "hecatomb is a virome analysis pipeline for analysis of Illumina sequence data"
+	"github/ukoethe/vigra": {
+	"id": "github/ukoethe/vigra",
+	"title": "github/ukoethe/vigra",
+	"url": " https://rseng.github.io/software/repository/github/ukoethe/vigra",
+	"content": "a generic C++ library for image analysis"
 	},
-	"github/chenjj2/forecaster": {
-	"id": "github/chenjj2/forecaster",
-	"title": "github/chenjj2/forecaster",
-	"url": " https://rseng.github.io/software/repository/github/chenjj2/forecaster",
+	"github/lzx325/DeeReCT-APA-repo": {
+	"id": "github/lzx325/DeeReCT-APA-repo",
+	"title": "github/lzx325/DeeReCT-APA-repo",
+	"url": " https://rseng.github.io/software/repository/github/lzx325/DeeReCT-APA-repo",
 	"content": "None"
 	},
-	"github/JonasRieger/ldaPrototype": {
-	"id": "github/JonasRieger/ldaPrototype",
-	"title": "github/JonasRieger/ldaPrototype",
-	"url": " https://rseng.github.io/software/repository/github/JonasRieger/ldaPrototype",
-	"content": "Determine a Prototype from a number of runs of Latent Dirichlet Allocation (LDA) measuring its similarities with S-CLOP: A procedure to select the LDA run with highest mean pairwise similarity, which is measured by S-CLOP (Similarity of multiple sets by Clustering with Local Pruning), to all other runs."
+	"github/studla/RYUTO": {
+	"id": "github/studla/RYUTO",
+	"title": "github/studla/RYUTO",
+	"url": " https://rseng.github.io/software/repository/github/studla/RYUTO",
+	"content": "Ryuto: Network-Flow based Transcriptome Reconstruction"
 	},
-	"github/marschall-lab/panacus": {
-	"id": "github/marschall-lab/panacus",
-	"title": "github/marschall-lab/panacus",
-	"url": " https://rseng.github.io/software/repository/github/marschall-lab/panacus",
-	"content": "Panacus is a tool for computing statistics for GFA-formatted pangenome graphs"
+	"github/GRIT-RBSim/GRIT": {
+	"id": "github/GRIT-RBSim/GRIT",
+	"title": "github/GRIT-RBSim/GRIT",
+	"url": " https://rseng.github.io/software/repository/github/GRIT-RBSim/GRIT",
+	"content": "Gravitational Rigid-body InTegrators, for simulating the coupled dynamics of both spin and orbit."
 	},
-	"github/stevenweaver/seqcomplexity": {
-	"id": "github/stevenweaver/seqcomplexity",
-	"title": "github/stevenweaver/seqcomplexity",
-	"url": " https://rseng.github.io/software/repository/github/stevenweaver/seqcomplexity",
-	"content": "Rust package that calculates sequence complexity from FastQ file"
+	"github/wetransform-os/ProMCDA": {
+	"id": "github/wetransform-os/ProMCDA",
+	"title": "github/wetransform-os/ProMCDA",
+	"url": " https://rseng.github.io/software/repository/github/wetransform-os/ProMCDA",
+	"content": "A tool to estimate ranks of alternatives and their uncertainties based on the Multi Criteria Decision Analysis approach."
 	},
-	"github/teuben/QAC": {
-	"id": "github/teuben/QAC",
-	"title": "github/teuben/QAC",
-	"url": " https://rseng.github.io/software/repository/github/teuben/QAC",
-	"content": "Quick Array Combinations:  front end to CASA to run tp2vis, feather and various array combination methods"
+	"github/beebdev/HARU": {
+	"id": "github/beebdev/HARU",
+	"title": "github/beebdev/HARU",
+	"url": " https://rseng.github.io/software/repository/github/beebdev/HARU",
+	"content": "Hardware Accelerated Read Until"
 	},
-	"github/teuben/DataComb": {
-	"id": "github/teuben/DataComb",
-	"title": "github/teuben/DataComb",
-	"url": " https://rseng.github.io/software/repository/github/teuben/DataComb",
-	"content": "Code for the DataComb paper"
+	"github/GalSim-developers/GalSim": {
+	"id": "github/GalSim-developers/GalSim",
+	"title": "github/GalSim-developers/GalSim",
+	"url": " https://rseng.github.io/software/repository/github/GalSim-developers/GalSim",
+	"content": "The modular galaxy image simulation toolkit.  Documentation:"
 	},
-	"github/teuben/nemo": {
-	"id": "github/teuben/nemo",
-	"title": "github/teuben/nemo",
-	"url": " https://rseng.github.io/software/repository/github/teuben/nemo",
-	"content": "a Stellar Dynamics Toolbox (Not Everybody Must Observe)"
+	"github/JuliaOpt/JuMP.jl": {
+	"id": "github/JuliaOpt/JuMP.jl",
+	"title": "github/JuliaOpt/JuMP.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaOpt/JuMP.jl",
+	"content": "Modeling language for Mathematical Optimization (linear, mixed-integer, conic, semidefinite, nonlinear)"
 	},
-	"github/cinemascience/cinema_snap": {
-	"id": "github/cinemascience/cinema_snap",
-	"title": "github/cinemascience/cinema_snap",
-	"url": " https://rseng.github.io/software/repository/github/cinemascience/cinema_snap",
-	"content": "React-based web viewer"
+	"github/suneeshjacob/ACRoD": {
+	"id": "github/suneeshjacob/ACRoD",
+	"title": "github/suneeshjacob/ACRoD",
+	"url": " https://rseng.github.io/software/repository/github/suneeshjacob/ACRoD",
+	"content": "Automatic Computation for Robot Design"
 	},
-	"github/LBNL-ETA/MSWH": {
-	"id": "github/LBNL-ETA/MSWH",
-	"title": "github/LBNL-ETA/MSWH",
-	"url": " https://rseng.github.io/software/repository/github/LBNL-ETA/MSWH",
-	"content": "Multiscale Solar Water Heating"
+	"github/PENTACLE-Team/PENTACLE": {
+	"id": "github/PENTACLE-Team/PENTACLE",
+	"title": "github/PENTACLE-Team/PENTACLE",
+	"url": " https://rseng.github.io/software/repository/github/PENTACLE-Team/PENTACLE",
+	"content": "None"
 	},
-	"github/3top1a/biotools-linter": {
-	"id": "github/3top1a/biotools-linter",
-	"title": "github/3top1a/biotools-linter",
-	"url": " https://rseng.github.io/software/repository/github/3top1a/biotools-linter",
-	"content": "This website serves to help bio.tools database editors and maintainers help with data quality by searching for common quantifiable errors."
+	"github/masadcv/FastGeodis": {
+	"id": "github/masadcv/FastGeodis",
+	"title": "github/masadcv/FastGeodis",
+	"url": " https://rseng.github.io/software/repository/github/masadcv/FastGeodis",
+	"content": "Fast Implementation of Generalised Geodesic Distance Transform for CPU (OpenMP) and GPU (CUDA)"
 	},
-	"github/patrickfuchs/buildH": {
-	"id": "github/patrickfuchs/buildH",
-	"title": "github/patrickfuchs/buildH",
-	"url": " https://rseng.github.io/software/repository/github/patrickfuchs/buildH",
-	"content": ":computer: Build hydrogen atoms from united-atom molecular dynamics of lipids and calculate the order parameters."
+	"github/nick-youngblut/gtdb_to_taxdump": {
+	"id": "github/nick-youngblut/gtdb_to_taxdump",
+	"title": "github/nick-youngblut/gtdb_to_taxdump",
+	"url": " https://rseng.github.io/software/repository/github/nick-youngblut/gtdb_to_taxdump",
+	"content": "Convert GTDB taxonomy to NCBI taxdump format"
 	},
-	"github/szwiep/py_SBeLT": {
-	"id": "github/szwiep/py_SBeLT",
-	"title": "github/szwiep/py_SBeLT",
-	"url": " https://rseng.github.io/software/repository/github/szwiep/py_SBeLT",
-	"content": "A Markov-type numerical model of sediment particle transport in rivers"
+	"github/JensUweUlrich/ReadBouncer": {
+	"id": "github/JensUweUlrich/ReadBouncer",
+	"title": "github/JensUweUlrich/ReadBouncer",
+	"url": " https://rseng.github.io/software/repository/github/JensUweUlrich/ReadBouncer",
+	"content": "Fast and scalable nanopore adaptive sampling"
 	},
-	"github/skiehl/wwz": {
-	"id": "github/skiehl/wwz",
-	"title": "github/skiehl/wwz",
-	"url": " https://rseng.github.io/software/repository/github/skiehl/wwz",
-	"content": "Weighted wavelet z-transform (WWZ) analysis package"
+	"github/jharno/cubep3m": {
+	"id": "github/jharno/cubep3m",
+	"title": "github/jharno/cubep3m",
+	"url": " https://rseng.github.io/software/repository/github/jharno/cubep3m",
+	"content": "cosmological n-body code"
 	},
-	"github/skiehl/lcsim": {
-	"id": "github/skiehl/lcsim",
-	"title": "github/skiehl/lcsim",
-	"url": " https://rseng.github.io/software/repository/github/skiehl/lcsim",
-	"content": "Blazar light curve simulation package"
+	"github/joergbuchwald/joss_ogs6py_VTUinterface": {
+	"id": "github/joergbuchwald/joss_ogs6py_VTUinterface",
+	"title": "github/joergbuchwald/joss_ogs6py_VTUinterface",
+	"url": " https://rseng.github.io/software/repository/github/joergbuchwald/joss_ogs6py_VTUinterface",
+	"content": "None"
 	},
-	"github/skiehl/polarizationtools": {
-	"id": "github/skiehl/polarizationtools",
-	"title": "github/skiehl/polarizationtools",
-	"url": " https://rseng.github.io/software/repository/github/skiehl/polarizationtools",
-	"content": "Tools to deal with astrophysical polarization data in python3"
+	"github/leprojetcastor/castor": {
+	"id": "github/leprojetcastor/castor",
+	"title": "github/leprojetcastor/castor",
+	"url": " https://rseng.github.io/software/repository/github/leprojetcastor/castor",
+	"content": "None"
 	},
-	"github/tinglabs/scAIDE": {
-	"id": "github/tinglabs/scAIDE",
-	"title": "github/tinglabs/scAIDE",
-	"url": " https://rseng.github.io/software/repository/github/tinglabs/scAIDE",
+	"github/dr-joe-wirth/primerForge": {
+	"id": "github/dr-joe-wirth/primerForge",
+	"title": "github/dr-joe-wirth/primerForge",
+	"url": " https://rseng.github.io/software/repository/github/dr-joe-wirth/primerForge",
+	"content": "software to identify primers that can distinguish genomes"
+	},
+	"github/Nextomics/nextsv": {
+	"id": "github/Nextomics/nextsv",
+	"title": "github/Nextomics/nextsv",
+	"url": " https://rseng.github.io/software/repository/github/Nextomics/nextsv",
+	"content": "automated structural variation detection for long-read sequencing"
+	},
+	"github/teamPSG/kNN_Sleep_Scorer_kNNSS": {
+	"id": "github/teamPSG/kNN_Sleep_Scorer_kNNSS",
+	"title": "github/teamPSG/kNN_Sleep_Scorer_kNNSS",
+	"url": " https://rseng.github.io/software/repository/github/teamPSG/kNN_Sleep_Scorer_kNNSS",
+	"content": "A matlab package for automated sleep scoring using the k-nearest neighbors algorithm"
+	},
+	"github/QZH2022/germline_flow": {
+	"id": "github/QZH2022/germline_flow",
+	"title": "github/QZH2022/germline_flow",
+	"url": " https://rseng.github.io/software/repository/github/QZH2022/germline_flow",
 	"content": "None"
 	},
-	"github/gbrammer/grizli": {
-	"id": "github/gbrammer/grizli",
-	"title": "github/gbrammer/grizli",
-	"url": " https://rseng.github.io/software/repository/github/gbrammer/grizli",
-	"content": "Grizli:  The &#34;Grism redshift and line&#34; analysis software"
+	"github/0satoken/Eclairs": {
+	"id": "github/0satoken/Eclairs",
+	"title": "github/0satoken/Eclairs",
+	"url": " https://rseng.github.io/software/repository/github/0satoken/Eclairs",
+	"content": "Efficient Codes for the LArge scales of the unIveRSe"
 	},
-	"github/gbrammer/threedhst": {
-	"id": "github/gbrammer/threedhst",
-	"title": "github/gbrammer/threedhst",
-	"url": " https://rseng.github.io/software/repository/github/gbrammer/threedhst",
-	"content": "3D-HST grism analysis software"
+	"github/wilsonrljr/sysidentpy": {
+	"id": "github/wilsonrljr/sysidentpy",
+	"title": "github/wilsonrljr/sysidentpy",
+	"url": " https://rseng.github.io/software/repository/github/wilsonrljr/sysidentpy",
+	"content": "A Python package for System Identification using NARMAX models"
 	},
-	"github/gbrammer/unicorn": {
-	"id": "github/gbrammer/unicorn",
-	"title": "github/gbrammer/unicorn",
-	"url": " https://rseng.github.io/software/repository/github/gbrammer/unicorn",
-	"content": "Full 3D-HST grism pipeline"
+	"github/florpi/sunbird": {
+	"id": "github/florpi/sunbird",
+	"title": "github/florpi/sunbird",
+	"url": " https://rseng.github.io/software/repository/github/florpi/sunbird",
+	"content": "COsmOlogical inference with dEnsity Split cluStering"
 	},
-	"github/fumi-github/omicwas": {
-	"id": "github/fumi-github/omicwas",
-	"title": "github/fumi-github/omicwas",
-	"url": " https://rseng.github.io/software/repository/github/fumi-github/omicwas",
-	"content": "Cell-Type-Specific Disease Association Testing in Bulk Omics Experiments"
+	"github/uw-comphys/opencmp": {
+	"id": "github/uw-comphys/opencmp",
+	"title": "github/uw-comphys/opencmp",
+	"url": " https://rseng.github.io/software/repository/github/uw-comphys/opencmp",
+	"content": "OpenCMP is a computational multiphysics software package based on the finite element method. It is primarily intended for physicochemical processes involving significant convective flow."
 	},
-	"github/spacepy/spacepy": {
-	"id": "github/spacepy/spacepy",
-	"title": "github/spacepy/spacepy",
-	"url": " https://rseng.github.io/software/repository/github/spacepy/spacepy",
-	"content": "Space Science library for Python - contains superposed epoch classes, drift shell tracing, access to magnetic field models, streamline tracing, bootstrap confidence limits, time and coordinate conversions, etc."
+	"github/uw-comphys/shapelets": {
+	"id": "github/uw-comphys/shapelets",
+	"title": "github/uw-comphys/shapelets",
+	"url": " https://rseng.github.io/software/repository/github/uw-comphys/shapelets",
+	"content": "shapelets is a python package that implements several shapelet functions and some of their significant applications in science and astronomy."
 	},
-	"github/bpairet/mayo_hci": {
-	"id": "github/bpairet/mayo_hci",
-	"title": "github/bpairet/mayo_hci",
-	"url": " https://rseng.github.io/software/repository/github/bpairet/mayo_hci",
-	"content": "None"
+	"github/uw-comphys/openccm": {
+	"id": "github/uw-comphys/openccm",
+	"title": "github/uw-comphys/openccm",
+	"url": " https://rseng.github.io/software/repository/github/uw-comphys/openccm",
+	"content": "OpenCCM is a CFD-based compartment modelling software package. It is primarily intended for convection dominated reactive flows which feature a weak or one-way coupling between the reactive species and the carrier fluid, i.e. the reaction does not substantially influence the fluid flow over the course of the simulation. "
 	},
-	"github/mariapetro/LeHaMoC": {
-	"id": "github/mariapetro/LeHaMoC",
-	"title": "github/mariapetro/LeHaMoC",
-	"url": " https://rseng.github.io/software/repository/github/mariapetro/LeHaMoC",
-	"content": "Leptonic-Hadronic Modeling Code for High-Energy Astrophysical Sources"
+	"github/NLeSC-GO-common-infrastructure/marzipan": {
+	"id": "github/NLeSC-GO-common-infrastructure/marzipan",
+	"title": "github/NLeSC-GO-common-infrastructure/marzipan",
+	"url": " https://rseng.github.io/software/repository/github/NLeSC-GO-common-infrastructure/marzipan",
+	"content": "Automated OpenNebula instantiation and provisioning (e.g  SURF HPC)"
 	},
-	"github/Nic5472K/ScientificData2021_HealthGym": {
-	"id": "github/Nic5472K/ScientificData2021_HealthGym",
-	"title": "github/Nic5472K/ScientificData2021_HealthGym",
-	"url": " https://rseng.github.io/software/repository/github/Nic5472K/ScientificData2021_HealthGym",
-	"content": "None"
+	"github/UncertainLab/Enlsip.jl": {
+	"id": "github/UncertainLab/Enlsip.jl",
+	"title": "github/UncertainLab/Enlsip.jl",
+	"url": " https://rseng.github.io/software/repository/github/UncertainLab/Enlsip.jl",
+	"content": "Enlsip.jl is the Julia version of a Fortran77 optimization library designed to solve nonlinear least squares problems under general nonlinear constraints."
 	},
-	"github/timothyas/xesn": {
-	"id": "github/timothyas/xesn",
-	"title": "github/timothyas/xesn",
-	"url": " https://rseng.github.io/software/repository/github/timothyas/xesn",
-	"content": "Large scale Echo State Networks powered by xarray and dask."
+	"github/galaxyproject/ansible-tiaas2": {
+	"id": "github/galaxyproject/ansible-tiaas2",
+	"title": "github/galaxyproject/ansible-tiaas2",
+	"url": " https://rseng.github.io/software/repository/github/galaxyproject/ansible-tiaas2",
+	"content": "Ansible role for deploying TIaaS2"
 	},
-	"github/staphopia/staphopia-paper": {
-	"id": "github/staphopia/staphopia-paper",
-	"title": "github/staphopia/staphopia-paper",
-	"url": " https://rseng.github.io/software/repository/github/staphopia/staphopia-paper",
-	"content": "Code used for Staphopia manuscript"
+	"github/galaxyproject/galaxy-lib": {
+	"id": "github/galaxyproject/galaxy-lib",
+	"title": "github/galaxyproject/galaxy-lib",
+	"url": " https://rseng.github.io/software/repository/github/galaxyproject/galaxy-lib",
+	"content": "Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library."
 	},
-	"github/polca/unfold": {
-	"id": "github/polca/unfold",
-	"title": "github/polca/unfold",
-	"url": " https://rseng.github.io/software/repository/github/polca/unfold",
-	"content": "UNpacking For scenariO-based Lca Databases"
+	"github/henrysky/astroNN": {
+	"id": "github/henrysky/astroNN",
+	"title": "github/henrysky/astroNN",
+	"url": " https://rseng.github.io/software/repository/github/henrysky/astroNN",
+	"content": "Deep Learning for Astronomers with Tensorflow"
 	},
-	"github/polca/pathways": {
-	"id": "github/polca/pathways",
-	"title": "github/polca/pathways",
-	"url": " https://rseng.github.io/software/repository/github/polca/pathways",
-	"content": "Scenario-wide Life Cycle Assessment"
+	"github/swiss-seismological-service/DUGseis": {
+	"id": "github/swiss-seismological-service/DUGseis",
+	"title": "github/swiss-seismological-service/DUGseis",
+	"url": " https://rseng.github.io/software/repository/github/swiss-seismological-service/DUGseis",
+	"content": "Software for acquisition and processing of micro-seismic data"
 	},
-	"github/ComplexGroupInteractions/xgi": {
-	"id": "github/ComplexGroupInteractions/xgi",
-	"title": "github/ComplexGroupInteractions/xgi",
-	"url": " https://rseng.github.io/software/repository/github/ComplexGroupInteractions/xgi",
-	"content": "CompleX Group Interactions (XGI) provides an ecosystem for the analysis and representation of complex systems with group interactions."
+	"github/nbarbey/TomograPy": {
+	"id": "github/nbarbey/TomograPy",
+	"title": "github/nbarbey/TomograPy",
+	"url": " https://rseng.github.io/software/repository/github/nbarbey/TomograPy",
+	"content": "Siddon tomography algorithm"
 	},
-	"github/bjmorgan/py-sc-fermi": {
-	"id": "github/bjmorgan/py-sc-fermi",
-	"title": "github/bjmorgan/py-sc-fermi",
-	"url": " https://rseng.github.io/software/repository/github/bjmorgan/py-sc-fermi",
-	"content": "py-sc-fermi is a materials modelling code for calculating self-consistent Fermi energies and defect concentrations under thermodynamic equilibrium (or quasi-equilibrium) given defect formation energies."
+	"github/mwhosek/extlaw_H18": {
+	"id": "github/mwhosek/extlaw_H18",
+	"title": "github/mwhosek/extlaw_H18",
+	"url": " https://rseng.github.io/software/repository/github/mwhosek/extlaw_H18",
+	"content": "Stand-alone python code to generate extinction law between 0.8 -- 2.2 microns, from Hosek+18"
 	},
-	"github/pencil-code/pencil-code": {
-	"id": "github/pencil-code/pencil-code",
-	"title": "github/pencil-code/pencil-code",
-	"url": " https://rseng.github.io/software/repository/github/pencil-code/pencil-code",
-	"content": "A high-order finite-difference code for compressible hydrodynamic flows with magnetic fields and particles"
+	"github/mehdirezaie/SYSNet": {
+	"id": "github/mehdirezaie/SYSNet",
+	"title": "github/mehdirezaie/SYSNet",
+	"url": " https://rseng.github.io/software/repository/github/mehdirezaie/SYSNet",
+	"content": "End-to-End pipeline for Neural Network modeling of imaging systematics in Galaxy Surveys"
 	},
-	"github/freebayes/freebayes": {
-	"id": "github/freebayes/freebayes",
-	"title": "github/freebayes/freebayes",
-	"url": " https://rseng.github.io/software/repository/github/freebayes/freebayes",
-	"content": "Bayesian haplotype-based genetic polymorphism discovery and genotyping."
+	"github/21cmFAST/21cmFAST": {
+	"id": "github/21cmFAST/21cmFAST",
+	"title": "github/21cmFAST/21cmFAST",
+	"url": " https://rseng.github.io/software/repository/github/21cmFAST/21cmFAST",
+	"content": "Official repository for 21cmFAST: a code for generating fast simulations of the cosmological 21cm signal"
 	},
-	"github/datalad/datalad": {
-	"id": "github/datalad/datalad",
-	"title": "github/datalad/datalad",
-	"url": " https://rseng.github.io/software/repository/github/datalad/datalad",
-	"content": "Keep code, data, containers under control with git  and git-annex"
+	"github/cpinte/pymcfost": {
+	"id": "github/cpinte/pymcfost",
+	"title": "github/cpinte/pymcfost",
+	"url": " https://rseng.github.io/software/repository/github/cpinte/pymcfost",
+	"content": "python interface to the 3D radiative transfer code mcfost"
 	},
-	"github/gwastro/pycbc": {
-	"id": "github/gwastro/pycbc",
-	"title": "github/gwastro/pycbc",
-	"url": " https://rseng.github.io/software/repository/github/gwastro/pycbc",
-	"content": "Core package to analyze gravitational-wave data, find signals, and study their parameters. This package was used in the first direct detection of gravitational waves (GW150914), and is used in the ongoing analysis of LIGO/Virgo data.  "
+	"github/cpinte/casa_cube": {
+	"id": "github/cpinte/casa_cube",
+	"title": "github/cpinte/casa_cube",
+	"url": " https://rseng.github.io/software/repository/github/cpinte/casa_cube",
+	"content": "python tool to display and analysis astronomical data cubes"
 	},
-	"github/thiago-glissoi/FFF-Line-Segmentation": {
-	"id": "github/thiago-glissoi/FFF-Line-Segmentation",
-	"title": "github/thiago-glissoi/FFF-Line-Segmentation",
-	"url": " https://rseng.github.io/software/repository/github/thiago-glissoi/FFF-Line-Segmentation",
-	"content": "The fff_segmenter algorithm is used to segment an acoustic signal obtained from a first layer 3D print into multiple acoustic blocks related to specific geometrical elements of the printed part, such as contour lines, raster lines, and transition between raster lines."
+	"github/cpinte/mcfost": {
+	"id": "github/cpinte/mcfost",
+	"title": "github/cpinte/mcfost",
+	"url": " https://rseng.github.io/software/repository/github/cpinte/mcfost",
+	"content": "MCFOST radiative transfer code"
 	},
-	"github/soedinglab/mmseqs2": {
-	"id": "github/soedinglab/mmseqs2",
-	"title": "github/soedinglab/mmseqs2",
-	"url": " https://rseng.github.io/software/repository/github/soedinglab/mmseqs2",
-	"content": "MMseqs2: ultra fast and sensitive search and clustering suite"
+	"github/thomas0809/MolScribe": {
+	"id": "github/thomas0809/MolScribe",
+	"title": "github/thomas0809/MolScribe",
+	"url": " https://rseng.github.io/software/repository/github/thomas0809/MolScribe",
+	"content": "Robust Molecular Structure Recognition with Image-to-Graph Generation"
 	},
-	"github/soedinglab/hh-suite": {
-	"id": "github/soedinglab/hh-suite",
-	"title": "github/soedinglab/hh-suite",
-	"url": " https://rseng.github.io/software/repository/github/soedinglab/hh-suite",
-	"content": "Remote protein homology detection suite."
+	"github/gorpipe/gor": {
+	"id": "github/gorpipe/gor",
+	"title": "github/gorpipe/gor",
+	"url": " https://rseng.github.io/software/repository/github/gorpipe/gor",
+	"content": "GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine."
 	},
-	"github/soedinglab/metaeuk": {
-	"id": "github/soedinglab/metaeuk",
-	"title": "github/soedinglab/metaeuk",
-	"url": " https://rseng.github.io/software/repository/github/soedinglab/metaeuk",
-	"content": "MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics"
+	"github/chombo-discharge/chombo-discharge": {
+	"id": "github/chombo-discharge/chombo-discharge",
+	"title": "github/chombo-discharge/chombo-discharge",
+	"url": " https://rseng.github.io/software/repository/github/chombo-discharge/chombo-discharge",
+	"content": "Beta release of chombo-discharge, a research code for low-temperature plasma which uses a Cartesian cut-cell formalism."
 	},
-	"github/soedinglab/MMseqs2": {
-	"id": "github/soedinglab/MMseqs2",
-	"title": "github/soedinglab/MMseqs2",
-	"url": " https://rseng.github.io/software/repository/github/soedinglab/MMseqs2",
-	"content": "MMseqs2: ultra fast and sensitive search and clustering suite"
+	"github/ni1o1/transbigdata": {
+	"id": "github/ni1o1/transbigdata",
+	"title": "github/ni1o1/transbigdata",
+	"url": " https://rseng.github.io/software/repository/github/ni1o1/transbigdata",
+	"content": "A Python package develop for transportation spatio-temporal big data processing, analysis and visualization."
 	},
-	"github/soedinglab/plass": {
-	"id": "github/soedinglab/plass",
-	"title": "github/soedinglab/plass",
-	"url": " https://rseng.github.io/software/repository/github/soedinglab/plass",
-	"content": "Protein-Level ASSembler (PLASS): sensitive and precise protein assembler"
+	"github/equib/equib": {
+	"id": "github/equib/equib",
+	"title": "github/equib/equib",
+	"url": " https://rseng.github.io/software/repository/github/equib/equib",
+	"content": "EQUIB - Fortran Program for Equilibrium Atomic Populations and Line Emissivities"
 	},
-	"github/soedinglab/spacepharer": {
-	"id": "github/soedinglab/spacepharer",
-	"title": "github/soedinglab/spacepharer",
-	"url": " https://rseng.github.io/software/repository/github/soedinglab/spacepharer",
-	"content": "SpacePHARER CRISPR Spacer Phage-Host pAiRs findER"
+	"github/equib/pyEQUIB": {
+	"id": "github/equib/pyEQUIB",
+	"title": "github/equib/pyEQUIB",
+	"url": " https://rseng.github.io/software/repository/github/equib/pyEQUIB",
+	"content": "pyEQUIB - Python Package for Plasma Diagnostics and Abundance Analysis"
 	},
-	"github/mengaldo/PySPOD": {
-	"id": "github/mengaldo/PySPOD",
-	"title": "github/mengaldo/PySPOD",
-	"url": " https://rseng.github.io/software/repository/github/mengaldo/PySPOD",
-	"content": "A Python package for spectral proper orthogonal decomposition (SPOD). "
+	"github/SofieVG/FlowSOM": {
+	"id": "github/SofieVG/FlowSOM",
+	"title": "github/SofieVG/FlowSOM",
+	"url": " https://rseng.github.io/software/repository/github/SofieVG/FlowSOM",
+	"content": "Using self-organizing maps for visualization and interpretation of cytometry data"
 	},
-	"github/SarveshVGharat/Plages-Identification": {
-	"id": "github/SarveshVGharat/Plages-Identification",
-	"title": "github/SarveshVGharat/Plages-Identification",
-	"url": " https://rseng.github.io/software/repository/github/SarveshVGharat/Plages-Identification",
-	"content": "None"
+	"github/subisarkar/JexoSim": {
+	"id": "github/subisarkar/JexoSim",
+	"title": "github/subisarkar/JexoSim",
+	"url": " https://rseng.github.io/software/repository/github/subisarkar/JexoSim",
+	"content": "JexoSim (JWST Exoplanet Observation Simulator) 2.0, is a time-domain simulator of JWST exoplanet transit observations."
 	},
-	"github/bhi-kimlab/StressGenePred": {
-	"id": "github/bhi-kimlab/StressGenePred",
-	"title": "github/bhi-kimlab/StressGenePred",
-	"url": " https://rseng.github.io/software/repository/github/bhi-kimlab/StressGenePred",
-	"content": "Stress predicting framework with microarray data based on CMCL and logical correlation model"
+	"github/NickSwainston/pulsar_spectra": {
+	"id": "github/NickSwainston/pulsar_spectra",
+	"title": "github/NickSwainston/pulsar_spectra",
+	"url": " https://rseng.github.io/software/repository/github/NickSwainston/pulsar_spectra",
+	"content": "A simple interface to record pulsar&#39;s flux density measurements for a large number of papers and perform fitting of spectral models."
 	},
-	"github/muzafferarikan/gNOMO2": {
-	"id": "github/muzafferarikan/gNOMO2",
-	"title": "github/muzafferarikan/gNOMO2",
-	"url": " https://rseng.github.io/software/repository/github/muzafferarikan/gNOMO2",
-	"content": "gNOMO2 allows integrated multi-omics analyses of microbiomes"
+	"github/anddssan/CLOUDe": {
+	"id": "github/anddssan/CLOUDe",
+	"title": "github/anddssan/CLOUDe",
+	"url": " https://rseng.github.io/software/repository/github/anddssan/CLOUDe",
+	"content": "CLOUDe is an R implementation of Campelo dos Santos, DeGiorgio and Assis&#39; (2023) suite of machine learning methods for predicting evolutionary targets of gene deletion events from expression data in two species."
 	},
-	"github/logan-pearce/lofti_gaia": {
-	"id": "github/logan-pearce/lofti_gaia",
-	"title": "github/logan-pearce/lofti_gaia",
-	"url": " https://rseng.github.io/software/repository/github/logan-pearce/lofti_gaia",
-	"content": "Python package for orbit fitting with Gaia astrometry"
+	"github/AgrDataSci/climatrends": {
+	"id": "github/AgrDataSci/climatrends",
+	"title": "github/AgrDataSci/climatrends",
+	"url": " https://rseng.github.io/software/repository/github/AgrDataSci/climatrends",
+	"content": "Climate Variability Indices for Ecological Modelling"
 	},
-	"github/H-E-L-P/XID_plus": {
-	"id": "github/H-E-L-P/XID_plus",
-	"title": "github/H-E-L-P/XID_plus",
-	"url": " https://rseng.github.io/software/repository/github/H-E-L-P/XID_plus",
-	"content": "Next generation XID development"
+	"github/ropensci-review-tools/pkgstats": {
+	"id": "github/ropensci-review-tools/pkgstats",
+	"title": "github/ropensci-review-tools/pkgstats",
+	"url": " https://rseng.github.io/software/repository/github/ropensci-review-tools/pkgstats",
+	"content": "Historical statistics of every R package ever"
 	},
-	"github/EdanRein/pyPplusS": {
-	"id": "github/EdanRein/pyPplusS",
-	"title": "github/EdanRein/pyPplusS",
-	"url": " https://rseng.github.io/software/repository/github/EdanRein/pyPplusS",
-	"content": "pyPplusS code package for modeling exoplanets with rings"
+	"github/ropensci-review-tools/srr": {
+	"id": "github/ropensci-review-tools/srr",
+	"title": "github/ropensci-review-tools/srr",
+	"url": " https://rseng.github.io/software/repository/github/ropensci-review-tools/srr",
+	"content": "Software Review Roclets"
 	},
-	"github/reneshbedre/bioinfokit": {
-	"id": "github/reneshbedre/bioinfokit",
-	"title": "github/reneshbedre/bioinfokit",
-	"url": " https://rseng.github.io/software/repository/github/reneshbedre/bioinfokit",
-	"content": "The bioinfokit toolkit aims to provide various easy-to-use functionalities to analyze, visualize, and interpret the biological data generated from genome-scale omics experiments."
+	"github/ropensci-review-tools/roreviewapi": {
+	"id": "github/ropensci-review-tools/roreviewapi",
+	"title": "github/ropensci-review-tools/roreviewapi",
+	"url": " https://rseng.github.io/software/repository/github/ropensci-review-tools/roreviewapi",
+	"content": "API endpoint for package reviews via ropensci-review-bot"
 	},
-	"github/KeplerGO/kadenza": {
-	"id": "github/KeplerGO/kadenza",
-	"title": "github/KeplerGO/kadenza",
-	"url": " https://rseng.github.io/software/repository/github/KeplerGO/kadenza",
-	"content": "Converts raw cadence target data from the Kepler space telescope into astronomer-friendly FITS files."
+	"github/ropensci-review-tools/pkgcheck": {
+	"id": "github/ropensci-review-tools/pkgcheck",
+	"title": "github/ropensci-review-tools/pkgcheck",
+	"url": " https://rseng.github.io/software/repository/github/ropensci-review-tools/pkgcheck",
+	"content": "Check whether a package is ready for submission to rOpenSci&#39;s peer-review system"
 	},
-	"github/KeplerGO/k2mosaic": {
-	"id": "github/KeplerGO/k2mosaic",
-	"title": "github/KeplerGO/k2mosaic",
-	"url": " https://rseng.github.io/software/repository/github/KeplerGO/k2mosaic",
-	"content": "Mosaic Target Pixel Files (TPFs) obtained by NASA&#39;s Kepler/K2 missions into CCD-sized images and movies."
+	"github/ropensci-review-tools/autotest": {
+	"id": "github/ropensci-review-tools/autotest",
+	"title": "github/ropensci-review-tools/autotest",
+	"url": " https://rseng.github.io/software/repository/github/ropensci-review-tools/autotest",
+	"content": "Automatic testing of R packages"
 	},
-	"github/KeplerGO/K2fov": {
-	"id": "github/KeplerGO/K2fov",
-	"title": "github/KeplerGO/K2fov",
-	"url": " https://rseng.github.io/software/repository/github/KeplerGO/K2fov",
-	"content": "Check whether targets are in the field of view of NASA&#39;s K2 space telescope"
+	"github/DingshanDeng/ysoisochrone": {
+	"id": "github/DingshanDeng/ysoisochrone",
+	"title": "github/DingshanDeng/ysoisochrone",
+	"url": " https://rseng.github.io/software/repository/github/DingshanDeng/ysoisochrone",
+	"content": "This is the Python package that handles the isochrones for young stellar objects (YSOs). One of the primary goals of this package is to derive the stellar mass and ages from the isochrones."
 	},
-	"github/KeplerGO/PyKE": {
-	"id": "github/KeplerGO/PyKE",
-	"title": "github/KeplerGO/PyKE",
-	"url": " https://rseng.github.io/software/repository/github/KeplerGO/PyKE",
-	"content": "Easy command line tools for Kepler, K2 &amp; TESS data analysis."
+	"github/nialov/fractopo": {
+	"id": "github/nialov/fractopo",
+	"title": "github/nialov/fractopo",
+	"url": " https://rseng.github.io/software/repository/github/nialov/fractopo",
+	"content": "fractopo is a Python package with tools for validating and analyzing lineament and fracture trace maps"
 	},
-	"github/keflavich/HiGal_SEDfitter": {
-	"id": "github/keflavich/HiGal_SEDfitter",
-	"title": "github/keflavich/HiGal_SEDfitter",
-	"url": " https://rseng.github.io/software/repository/github/keflavich/HiGal_SEDfitter",
-	"content": "SED fitting tools for Herschel Hi-Gal data"
+	"github/statOmics/satuRnPaper": {
+	"id": "github/statOmics/satuRnPaper",
+	"title": "github/statOmics/satuRnPaper",
+	"url": " https://rseng.github.io/software/repository/github/statOmics/satuRnPaper",
+	"content": "Github repository associated with the publication of *satuRn: Scalable Analysis of Differential Transcript Usage for Bulk and Single-cell RNA-sequencing Applications*"
 	},
-	"github/SterlingYM/astroPIPS": {
-	"id": "github/SterlingYM/astroPIPS",
-	"title": "github/SterlingYM/astroPIPS",
-	"url": " https://rseng.github.io/software/repository/github/SterlingYM/astroPIPS",
-	"content": "A set of tools for photometric analysis. Determines the period of short-period variable stars."
+	"github/statOmics/tradeSeqPaper": {
+	"id": "github/statOmics/tradeSeqPaper",
+	"title": "github/statOmics/tradeSeqPaper",
+	"url": " https://rseng.github.io/software/repository/github/statOmics/tradeSeqPaper",
+	"content": "Scripts to reproduce analyses of tradeSeq paper."
 	},
-	"github/miRTop/mirtop": {
-	"id": "github/miRTop/mirtop",
-	"title": "github/miRTop/mirtop",
-	"url": " https://rseng.github.io/software/repository/github/miRTop/mirtop",
-	"content": "command lines tool to annotate miRNAs with a standard mirna/isomir naming"
+	"github/DynaSlum/satsense": {
+	"id": "github/DynaSlum/satsense",
+	"title": "github/DynaSlum/satsense",
+	"url": " https://rseng.github.io/software/repository/github/DynaSlum/satsense",
+	"content": "Satsense is a Python library for land use/cover classification using satellite imagery"
 	},
-	"github/BarquistLab/mason_paper": {
-	"id": "github/BarquistLab/mason_paper",
-	"title": "github/BarquistLab/mason_paper",
-	"url": " https://rseng.github.io/software/repository/github/BarquistLab/mason_paper",
-	"content": "Code and analysis for MASON paper"
+	"github/cvjena/JeFaPaTo": {
+	"id": "github/cvjena/JeFaPaTo",
+	"title": "github/cvjena/JeFaPaTo",
+	"url": " https://rseng.github.io/software/repository/github/cvjena/JeFaPaTo",
+	"content": "JeFaPaTo - A tool for the analysis of facial features"
 	},
-	"github/SpeedyWeather/SpeedyWeather.jl": {
-	"id": "github/SpeedyWeather/SpeedyWeather.jl",
-	"title": "github/SpeedyWeather/SpeedyWeather.jl",
-	"url": " https://rseng.github.io/software/repository/github/SpeedyWeather/SpeedyWeather.jl",
-	"content": "Play atmospheric modelling like it&#39;s LEGO."
+	"github/yfperezg/frisbhee": {
+	"id": "github/yfperezg/frisbhee",
+	"title": "github/yfperezg/frisbhee",
+	"url": " https://rseng.github.io/software/repository/github/yfperezg/frisbhee",
+	"content": "None"
 	},
-	"github/ruggiero/galstep": {
-	"id": "github/ruggiero/galstep",
-	"title": "github/ruggiero/galstep",
-	"url": " https://rseng.github.io/software/repository/github/ruggiero/galstep",
-	"content": "Generates initial conditions for a spiral galaxy simulation in a format that can be read in GADGET2 or RAMSES, or alternatively in the HDF5 format."
+	"github/sfschen/velocileptors": {
+	"id": "github/sfschen/velocileptors",
+	"title": "github/sfschen/velocileptors",
+	"url": " https://rseng.github.io/software/repository/github/sfschen/velocileptors",
+	"content": "A code for velocity-based Lagrangian and Eulerian PT expansions of redshift-space distortions."
 	},
-	"github/ruggiero/clustep": {
-	"id": "github/ruggiero/clustep",
-	"title": "github/ruggiero/clustep",
-	"url": " https://rseng.github.io/software/repository/github/ruggiero/clustep",
-	"content": "Generates initial conditions for a galaxy cluster halo simulation in a format that can be read in GADGET2 or RAMSES."
+	"github/astronomyk/SimCADO": {
+	"id": "github/astronomyk/SimCADO",
+	"title": "github/astronomyk/SimCADO",
+	"url": " https://rseng.github.io/software/repository/github/astronomyk/SimCADO",
+	"content": "None"
 	},
-	"github/txopen/histoc": {
-	"id": "github/txopen/histoc",
-	"title": "github/txopen/histoc",
-	"url": " https://rseng.github.io/software/repository/github/txopen/histoc",
-	"content": "Histocompatibility analysis performed by kidney allocation systems for transplantation"
+	"github/BiodataAnalysisGroup/kmerAnalyzer": {
+	"id": "github/BiodataAnalysisGroup/kmerAnalyzer",
+	"title": "github/BiodataAnalysisGroup/kmerAnalyzer",
+	"url": " https://rseng.github.io/software/repository/github/BiodataAnalysisGroup/kmerAnalyzer",
+	"content": "An alignment-free method capable of processing and counting k-mers in a reasonable time, while evaluating multiple values of the k parameter concurrently."
 	},
-	"github/RenLabBioinformatics/M6Allele": {
-	"id": "github/RenLabBioinformatics/M6Allele",
-	"title": "github/RenLabBioinformatics/M6Allele",
-	"url": " https://rseng.github.io/software/repository/github/RenLabBioinformatics/M6Allele",
-	"content": "M6Allele: A toolkit for detection of allele-specific RNA N6-methyladenosine modifications"
+	"github/BiodataAnalysisGroup/UMIc": {
+	"id": "github/BiodataAnalysisGroup/UMIc",
+	"title": "github/BiodataAnalysisGroup/UMIc",
+	"url": " https://rseng.github.io/software/repository/github/BiodataAnalysisGroup/UMIc",
+	"content": "A framework implementing a method for UMI deduplication and reads correction."
 	},
-	"github/nithyanandan/PRISim": {
-	"id": "github/nithyanandan/PRISim",
-	"title": "github/nithyanandan/PRISim",
-	"url": " https://rseng.github.io/software/repository/github/nithyanandan/PRISim",
-	"content": "Precision Radio Interferometry Simulator (for radio astronomy applications)"
+	"github/utrillalab/repromin": {
+	"id": "github/utrillalab/repromin",
+	"title": "github/utrillalab/repromin",
+	"url": " https://rseng.github.io/software/repository/github/utrillalab/repromin",
+	"content": "None"
 	},
-	"github/vibbits/phyd3": {
-	"id": "github/vibbits/phyd3",
-	"title": "github/vibbits/phyd3",
-	"url": " https://rseng.github.io/software/repository/github/vibbits/phyd3",
-	"content": "Phylogenetic tree viewer based on D3.js"
+	"github/samuelefiorini/tangle": {
+	"id": "github/samuelefiorini/tangle",
+	"title": "github/samuelefiorini/tangle",
+	"url": " https://rseng.github.io/software/repository/github/samuelefiorini/tangle",
+	"content": "TANGLE: Time spAN Guided neuraL attEntion model"
 	},
-	"github/GoekeLab/xpore": {
-	"id": "github/GoekeLab/xpore",
-	"title": "github/GoekeLab/xpore",
-	"url": " https://rseng.github.io/software/repository/github/GoekeLab/xpore",
-	"content": "Identification of differential RNA modifications from nanopore direct RNA sequencing"
+	"github/arhstevens/DarkSage": {
+	"id": "github/arhstevens/DarkSage",
+	"title": "github/arhstevens/DarkSage",
+	"url": " https://rseng.github.io/software/repository/github/arhstevens/DarkSage",
+	"content": "The Dark Sage semi-analytic model"
 	},
-	"github/revoltek/losoto": {
-	"id": "github/revoltek/losoto",
-	"title": "github/revoltek/losoto",
-	"url": " https://rseng.github.io/software/repository/github/revoltek/losoto",
-	"content": "LOFAR solutions tool"
+	"github/Clinical-Genomics-Umea/fraggler": {
+	"id": "github/Clinical-Genomics-Umea/fraggler",
+	"title": "github/Clinical-Genomics-Umea/fraggler",
+	"url": " https://rseng.github.io/software/repository/github/Clinical-Genomics-Umea/fraggler",
+	"content": "None"
 	},
-	"github/TravisWheelerLab/NINJA": {
-	"id": "github/TravisWheelerLab/NINJA",
-	"title": "github/TravisWheelerLab/NINJA",
-	"url": " https://rseng.github.io/software/repository/github/TravisWheelerLab/NINJA",
-	"content": "Nearly Infinite Neighbor Joining Application"
+	"github/pkestene/ramsesGPU": {
+	"id": "github/pkestene/ramsesGPU",
+	"title": "github/pkestene/ramsesGPU",
+	"url": " https://rseng.github.io/software/repository/github/pkestene/ramsesGPU",
+	"content": "Astrophysics MHD simulation code optimized for large cluster of GPU"
 	},
-	"github/TravisWheelerLab/VIBES": {
-	"id": "github/TravisWheelerLab/VIBES",
-	"title": "github/TravisWheelerLab/VIBES",
-	"url": " https://rseng.github.io/software/repository/github/TravisWheelerLab/VIBES",
-	"content": "Viral Integrations in Bacterial genomES"
+	"github/pkestene/xsmurf": {
+	"id": "github/pkestene/xsmurf",
+	"title": "github/pkestene/xsmurf",
+	"url": " https://rseng.github.io/software/repository/github/pkestene/xsmurf",
+	"content": "a wavelet-based multifractal image analysis tool implementing the WTMM (Wavelet Transform Modulus Maxima) method."
 	},
-	"github/edgardomortiz/Captus": {
-	"id": "github/edgardomortiz/Captus",
-	"title": "github/edgardomortiz/Captus",
-	"url": " https://rseng.github.io/software/repository/github/edgardomortiz/Captus",
-	"content": "Assembly of Phylogenomic Datasets from High-Throughput Sequencing data"
+	"github/seamplex/feenox": {
+	"id": "github/seamplex/feenox",
+	"title": "github/seamplex/feenox",
+	"url": " https://rseng.github.io/software/repository/github/seamplex/feenox",
+	"content": "Cloud-first free no-fee no-X uniX-like finite-element(ish) computational engineering tool"
 	},
-	"github/stan-dev/stan": {
-	"id": "github/stan-dev/stan",
-	"title": "github/stan-dev/stan",
-	"url": " https://rseng.github.io/software/repository/github/stan-dev/stan",
-	"content": "Stan development repository. The master branch contains the current release. The develop branch contains the latest stable development.  See the Developer Process Wiki for details.  "
+	"github/astro-informatics/massmappy": {
+	"id": "github/astro-informatics/massmappy",
+	"title": "github/astro-informatics/massmappy",
+	"url": " https://rseng.github.io/software/repository/github/astro-informatics/massmappy",
+	"content": "Mapping dark matter on the celestial sphere"
 	},
-	"github/ezquiaga/phazap": {
-	"id": "github/ezquiaga/phazap",
-	"title": "github/ezquiaga/phazap",
-	"url": " https://rseng.github.io/software/repository/github/ezquiaga/phazap",
-	"content": "Gravitational wave phase reconstruction for low-latency identification of strongly lensed signals"
+	"github/astro-informatics/harmonic": {
+	"id": "github/astro-informatics/harmonic",
+	"title": "github/astro-informatics/harmonic",
+	"url": " https://rseng.github.io/software/repository/github/astro-informatics/harmonic",
+	"content": "Machine learning assisted marginal likelihood (Bayesian evidence) estimation for Bayesian model selection"
 	},
-	"github/fzi-forschungszentrum-informatik/TSInterpret": {
-	"id": "github/fzi-forschungszentrum-informatik/TSInterpret",
-	"title": "github/fzi-forschungszentrum-informatik/TSInterpret",
-	"url": " https://rseng.github.io/software/repository/github/fzi-forschungszentrum-informatik/TSInterpret",
-	"content": "An Open-Source Library for the interpretability of time series classifiers"
+	"github/astro-informatics/ssht": {
+	"id": "github/astro-informatics/ssht",
+	"title": "github/astro-informatics/ssht",
+	"url": " https://rseng.github.io/software/repository/github/astro-informatics/ssht",
+	"content": "Fast and exact spin spherical harmonic transforms"
 	},
-	"github/pawni/BayesByHypernet": {
-	"id": "github/pawni/BayesByHypernet",
-	"title": "github/pawni/BayesByHypernet",
-	"url": " https://rseng.github.io/software/repository/github/pawni/BayesByHypernet",
-	"content": "Code for the paper Implicit Weight Uncertainty in Neural Networks"
+	"github/astro-informatics/RequiSim": {
+	"id": "github/astro-informatics/RequiSim",
+	"title": "github/astro-informatics/RequiSim",
+	"url": " https://rseng.github.io/software/repository/github/astro-informatics/RequiSim",
+	"content": "None"
 	},
-	"github/raufs/skDER": {
-	"id": "github/raufs/skDER",
-	"title": "github/raufs/skDER",
-	"url": " https://rseng.github.io/software/repository/github/raufs/skDER",
-	"content": "skDER: efficient &amp; high-resolution dereplication of microbial genomes to select representatives for comparative genomics and metagenomics. "
+	"github/astro-informatics/s2": {
+	"id": "github/astro-informatics/s2",
+	"title": "github/astro-informatics/s2",
+	"url": " https://rseng.github.io/software/repository/github/astro-informatics/s2",
+	"content": "Functions on the sphere"
 	},
-	"github/RoryChenXY/DataRepExp_public": {
-	"id": "github/RoryChenXY/DataRepExp_public",
-	"title": "github/RoryChenXY/DataRepExp_public",
-	"url": " https://rseng.github.io/software/repository/github/RoryChenXY/DataRepExp_public",
-	"content": "A shiny app that was developed to improve the FAIR of research data hosted on data repository."
+	"github/astro-informatics/stringgen": {
+	"id": "github/astro-informatics/stringgen",
+	"title": "github/astro-informatics/stringgen",
+	"url": " https://rseng.github.io/software/repository/github/astro-informatics/stringgen",
+	"content": "Scattering based cosmic string emulation"
 	},
-	"github/lys-devel/lys": {
-	"id": "github/lys-devel/lys",
-	"title": "github/lys-devel/lys",
-	"url": " https://rseng.github.io/software/repository/github/lys-devel/lys",
-	"content": "Interactive multi-dimensional data analysis and visualization"
+	"github/astro-informatics/sleplet": {
+	"id": "github/astro-informatics/sleplet",
+	"title": "github/astro-informatics/sleplet",
+	"url": " https://rseng.github.io/software/repository/github/astro-informatics/sleplet",
+	"content": "Slepian Scale-Discretised Wavelets"
 	},
-	"github/ndaniyar/aphot": {
-	"id": "github/ndaniyar/aphot",
-	"title": "github/ndaniyar/aphot",
-	"url": " https://rseng.github.io/software/repository/github/ndaniyar/aphot",
-	"content": "Photon Asymmetry"
+	"github/astro-informatics/s2fft": {
+	"id": "github/astro-informatics/s2fft",
+	"title": "github/astro-informatics/s2fft",
+	"url": " https://rseng.github.io/software/repository/github/astro-informatics/s2fft",
+	"content": "Differentiable and accelerated spherical transforms with JAX"
 	},
-	"github/MegaMorph/galapagos-c": {
-	"id": "github/MegaMorph/galapagos-c",
-	"title": "github/MegaMorph/galapagos-c",
-	"url": " https://rseng.github.io/software/repository/github/MegaMorph/galapagos-c",
-	"content": "Andreas Hiemer&#39;s re-implementation and extension of GALAPAGOS in C"
+	"github/astro-informatics/flaglet-archive": {
+	"id": "github/astro-informatics/flaglet-archive",
+	"title": "github/astro-informatics/flaglet-archive",
+	"url": " https://rseng.github.io/software/repository/github/astro-informatics/flaglet-archive",
+	"content": "Fast and exact wavelet transform on the ball"
 	},
-	"github/trchudley/pdemtools": {
-	"id": "github/trchudley/pdemtools",
-	"title": "github/trchudley/pdemtools",
-	"url": " https://rseng.github.io/software/repository/github/trchudley/pdemtools",
-	"content": "Conveniently search, download, and process ArcticDEM and REMA products"
+	"github/astro-informatics/flag-archive": {
+	"id": "github/astro-informatics/flag-archive",
+	"title": "github/astro-informatics/flag-archive",
+	"url": " https://rseng.github.io/software/repository/github/astro-informatics/flag-archive",
+	"content": "Fast Fourier-Laguerre transform on the ball and exact spherical Bessel and Fourier-Bessel transforms"
 	},
-	"github/tidyverse/glue": {
-	"id": "github/tidyverse/glue",
-	"title": "github/tidyverse/glue",
-	"url": " https://rseng.github.io/software/repository/github/tidyverse/glue",
-	"content": "Glue strings to data in R. Small, fast, dependency free interpreted string literals."
+	"github/astro-informatics/QuantifAI": {
+	"id": "github/astro-informatics/QuantifAI",
+	"title": "github/astro-informatics/QuantifAI",
+	"url": " https://rseng.github.io/software/repository/github/astro-informatics/QuantifAI",
+	"content": "PyTorch-based RI imaging reconstruction package with scalable Bayesian uncertainty quantification relying on data-driven (learned) priors"
 	},
-	"github/tidyverse/ggplot2": {
-	"id": "github/tidyverse/ggplot2",
-	"title": "github/tidyverse/ggplot2",
-	"url": " https://rseng.github.io/software/repository/github/tidyverse/ggplot2",
-	"content": "An implementation of the Grammar of Graphics in R"
+	"github/astro-informatics/comb": {
+	"id": "github/astro-informatics/comb",
+	"title": "github/astro-informatics/comb",
+	"url": " https://rseng.github.io/software/repository/github/astro-informatics/comb",
+	"content": "Compact object simulations on the sphere"
 	},
-	"github/constantAmateur/SoupX": {
-	"id": "github/constantAmateur/SoupX",
-	"title": "github/constantAmateur/SoupX",
-	"url": " https://rseng.github.io/software/repository/github/constantAmateur/SoupX",
-	"content": "R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data"
+	"github/astro-informatics/s2let": {
+	"id": "github/astro-informatics/s2let",
+	"title": "github/astro-informatics/s2let",
+	"url": " https://rseng.github.io/software/repository/github/astro-informatics/s2let",
+	"content": "Fast wavelet transforms on the sphere."
 	},
-	"github/kellino/DiscreteEntropy.jl": {
-	"id": "github/kellino/DiscreteEntropy.jl",
-	"title": "github/kellino/DiscreteEntropy.jl",
-	"url": " https://rseng.github.io/software/repository/github/kellino/DiscreteEntropy.jl",
-	"content": "Estimation of Shannon Entropy for Discrete Random Variables"
+	"github/astro-informatics/DarkMappy": {
+	"id": "github/astro-informatics/DarkMappy",
+	"title": "github/astro-informatics/DarkMappy",
+	"url": " https://rseng.github.io/software/repository/github/astro-informatics/DarkMappy",
+	"content": "Scalable mapping of the dark universe"
 	},
-	"github/mlujnie/simple": {
-	"id": "github/mlujnie/simple",
-	"title": "github/mlujnie/simple",
-	"url": " https://rseng.github.io/software/repository/github/mlujnie/simple",
-	"content": "Simple Intensity Map Producer for Line Emission (public code)"
+	"github/birnstiel/two-pop-py": {
+	"id": "github/birnstiel/two-pop-py",
+	"title": "github/birnstiel/two-pop-py",
+	"url": " https://rseng.github.io/software/repository/github/birnstiel/two-pop-py",
+	"content": "Implementation of the 2-population model for dust evolution in protoplanetary disks after Birnstiel, Klahr, &amp; Ercolano, A&amp;A 2012"
 	},
-	"github/sverhoeven/docker-cartodb": {
-	"id": "github/sverhoeven/docker-cartodb",
-	"title": "github/sverhoeven/docker-cartodb",
-	"url": " https://rseng.github.io/software/repository/github/sverhoeven/docker-cartodb",
-	"content": "Dockerized CartoDB"
+	"github/dalya/WeirdestGalaxies": {
+	"id": "github/dalya/WeirdestGalaxies",
+	"title": "github/dalya/WeirdestGalaxies",
+	"url": " https://rseng.github.io/software/repository/github/dalya/WeirdestGalaxies",
+	"content": "This repository contains the basic outlier detection algorithm that we use to find the weirdest SDSS galaxies."
 	},
-	"github/taoliu/MACS": {
-	"id": "github/taoliu/MACS",
-	"title": "github/taoliu/MACS",
-	"url": " https://rseng.github.io/software/repository/github/taoliu/MACS",
-	"content": "MACS -- Model-based Analysis of ChIP-Seq"
+	"github/chadagreene/Tide-Model-Driver": {
+	"id": "github/chadagreene/Tide-Model-Driver",
+	"title": "github/chadagreene/Tide-Model-Driver",
+	"url": " https://rseng.github.io/software/repository/github/chadagreene/Tide-Model-Driver",
+	"content": "Tide Model Driver for MATLAB, version 3.0"
 	},
-	"github/dartoon/galight": {
-	"id": "github/dartoon/galight",
-	"title": "github/dartoon/galight",
-	"url": " https://rseng.github.io/software/repository/github/dartoon/galight",
-	"content": "A python package that decompose the light into PSF and Sersic, fitting based on lenstronomy"
+	"github/cwru-pat/cosmograph": {
+	"id": "github/cwru-pat/cosmograph",
+	"title": "github/cwru-pat/cosmograph",
+	"url": " https://rseng.github.io/software/repository/github/cwru-pat/cosmograph",
+	"content": "COSMOlogical General Relativity And (Perfect fluid | Particle) Hydrodynamics"
 	},
-	"github/hoechenberger/questplus": {
-	"id": "github/hoechenberger/questplus",
-	"title": "github/hoechenberger/questplus",
-	"url": " https://rseng.github.io/software/repository/github/hoechenberger/questplus",
-	"content": "A QUEST+ implementation  in Python."
+	"github/cwru-pat/cmb-multipole_vectors": {
+	"id": "github/cwru-pat/cmb-multipole_vectors",
+	"title": "github/cwru-pat/cmb-multipole_vectors",
+	"url": " https://rseng.github.io/software/repository/github/cwru-pat/cmb-multipole_vectors",
+	"content": "Multipole Vector formalism"
 	},
-	"github/richford/groupyr": {
-	"id": "github/richford/groupyr",
-	"title": "github/richford/groupyr",
-	"url": " https://rseng.github.io/software/repository/github/richford/groupyr",
-	"content": "groupyr: Sparse Group Lasso in Python"
+	"github/annacrnn/rebound_fragmentation": {
+	"id": "github/annacrnn/rebound_fragmentation",
+	"title": "github/annacrnn/rebound_fragmentation",
+	"url": " https://rseng.github.io/software/repository/github/annacrnn/rebound_fragmentation",
+	"content": "Fragmentation and bulk composition tracking code for the C version of REBOUND.  Based on Childs &amp; Steffen 2021."
 	},
-	"github/ishinder/EASTR": {
-	"id": "github/ishinder/EASTR",
-	"title": "github/ishinder/EASTR",
-	"url": " https://rseng.github.io/software/repository/github/ishinder/EASTR",
-	"content": "Emending Alignment of Spliced Transcript Reads"
+	"github/cgobat/asymmetric_uncertainty": {
+	"id": "github/cgobat/asymmetric_uncertainty",
+	"title": "github/cgobat/asymmetric_uncertainty",
+	"url": " https://rseng.github.io/software/repository/github/cgobat/asymmetric_uncertainty",
+	"content": "A package that implements a class to represent numeric quantities with asymmetric uncertainties."
 	},
-	"github/MCTwo/MCMAC": {
-	"id": "github/MCTwo/MCMAC",
-	"title": "github/MCTwo/MCMAC",
-	"url": " https://rseng.github.io/software/repository/github/MCTwo/MCMAC",
-	"content": "Monte Carlo Merger Analysis Code (MCMAC)"
+	"github/danStich/dia": {
+	"id": "github/danStich/dia",
+	"title": "github/danStich/dia",
+	"url": " https://rseng.github.io/software/repository/github/danStich/dia",
+	"content": "An R package for the National Oceanic and Atmospheric Administration dam impact analysis"
 	},
-	"github/mwaskom/seaborn": {
-	"id": "github/mwaskom/seaborn",
-	"title": "github/mwaskom/seaborn",
-	"url": " https://rseng.github.io/software/repository/github/mwaskom/seaborn",
-	"content": "Statistical data visualization in Python"
+	"github/snijderlab/stitch": {
+	"id": "github/snijderlab/stitch",
+	"title": "github/snijderlab/stitch",
+	"url": " https://rseng.github.io/software/repository/github/snijderlab/stitch",
+	"content": "Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling"
 	},
-	"github/ICAMS/strucscan": {
-	"id": "github/ICAMS/strucscan",
-	"title": "github/ICAMS/strucscan",
-	"url": " https://rseng.github.io/software/repository/github/ICAMS/strucscan",
-	"content": "A lightweight python-based framework for high-throughput material simulation"
+	"github/tortellini-tools/action": {
+	"id": "github/tortellini-tools/action",
+	"title": "github/tortellini-tools/action",
+	"url": " https://rseng.github.io/software/repository/github/tortellini-tools/action",
+	"content": "GH action to check dependency licence issues using ort"
 	},
-	"github/SDTC-CPMed/scDrugPrio": {
-	"id": "github/SDTC-CPMed/scDrugPrio",
-	"title": "github/SDTC-CPMed/scDrugPrio",
-	"url": " https://rseng.github.io/software/repository/github/SDTC-CPMed/scDrugPrio",
-	"content": "Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease"
+	"github/statdivlab/rigr": {
+	"id": "github/statdivlab/rigr",
+	"title": "github/statdivlab/rigr",
+	"url": " https://rseng.github.io/software/repository/github/statdivlab/rigr",
+	"content": "Regression, Inference, and General Data Analysis Tools for R "
 	},
-	"github/migueldvb/cine": {
-	"id": "github/migueldvb/cine",
-	"title": "github/migueldvb/cine",
-	"url": " https://rseng.github.io/software/repository/github/migueldvb/cine",
-	"content": "Calculate infrared pumping rates by solar radiation"
+	"github/YuRui8879/MRASleepNet": {
+	"id": "github/YuRui8879/MRASleepNet",
+	"title": "github/YuRui8879/MRASleepNet",
+	"url": " https://rseng.github.io/software/repository/github/YuRui8879/MRASleepNet",
+	"content": "None"
 	},
-	"github/jaimedelacruz/stic": {
-	"id": "github/jaimedelacruz/stic",
-	"title": "github/jaimedelacruz/stic",
-	"url": " https://rseng.github.io/software/repository/github/jaimedelacruz/stic",
-	"content": "The Stockholm inversion code"
+	"github/JunTaoLuo/mctreesearch4j": {
+	"id": "github/JunTaoLuo/mctreesearch4j",
+	"title": "github/JunTaoLuo/mctreesearch4j",
+	"url": " https://rseng.github.io/software/repository/github/JunTaoLuo/mctreesearch4j",
+	"content": "None"
 	},
-	"github/neuralgraphs/diman": {
-	"id": "github/neuralgraphs/diman",
-	"title": "github/neuralgraphs/diman",
-	"url": " https://rseng.github.io/software/repository/github/neuralgraphs/diman",
-	"content": "A Clojure library for applying dimensional analysis."
+	"github/reneshbedre/bioinfokit": {
+	"id": "github/reneshbedre/bioinfokit",
+	"title": "github/reneshbedre/bioinfokit",
+	"url": " https://rseng.github.io/software/repository/github/reneshbedre/bioinfokit",
+	"content": "The bioinfokit toolkit aims to provide various easy-to-use functionalities to analyze, visualize, and interpret the biological data generated from genome-scale omics experiments."
 	},
-	"github/jamesrhester/Lerche.jl": {
-	"id": "github/jamesrhester/Lerche.jl",
-	"title": "github/jamesrhester/Lerche.jl",
-	"url": " https://rseng.github.io/software/repository/github/jamesrhester/Lerche.jl",
-	"content": "A Julia port of the Lark parser"
+	"github/arshajii/ema": {
+	"id": "github/arshajii/ema",
+	"title": "github/arshajii/ema",
+	"url": " https://rseng.github.io/software/repository/github/arshajii/ema",
+	"content": "Fast &amp; accurate alignment of barcoded short-reads"
 	},
-	"github/rodluger/everest": {
-	"id": "github/rodluger/everest",
-	"title": "github/rodluger/everest",
-	"url": " https://rseng.github.io/software/repository/github/rodluger/everest",
-	"content": "De-trending of K2 Light curves"
+	"github/kkjawz/coref-ee": {
+	"id": "github/kkjawz/coref-ee",
+	"title": "github/kkjawz/coref-ee",
+	"url": " https://rseng.github.io/software/repository/github/kkjawz/coref-ee",
+	"content": "Coreference Resolution With Entity Equalization"
 	},
-	"github/rodluger/starry_process": {
-	"id": "github/rodluger/starry_process",
-	"title": "github/rodluger/starry_process",
-	"url": " https://rseng.github.io/software/repository/github/rodluger/starry_process",
-	"content": "interpretable gaussian processes for stellar light curves"
+	"github/MeasureTransport/MParT": {
+	"id": "github/MeasureTransport/MParT",
+	"title": "github/MeasureTransport/MParT",
+	"url": " https://rseng.github.io/software/repository/github/MeasureTransport/MParT",
+	"content": "Monotone Parameterization Toolkit (MParT): A core library for constructing and using transport maps."
 	},
-	"github/rodluger/planetplanet": {
-	"id": "github/rodluger/planetplanet",
-	"title": "github/rodluger/planetplanet",
-	"url": " https://rseng.github.io/software/repository/github/rodluger/planetplanet",
-	"content": "A general photodynamical code for exoplanet light curves"
+	"github/SJ001/AI-Feynman": {
+	"id": "github/SJ001/AI-Feynman",
+	"title": "github/SJ001/AI-Feynman",
+	"url": " https://rseng.github.io/software/repository/github/SJ001/AI-Feynman",
+	"content": "None"
 	},
-	"github/BartoszBartmanski/StoSpa2": {
-	"id": "github/BartoszBartmanski/StoSpa2",
-	"title": "github/BartoszBartmanski/StoSpa2",
-	"url": " https://rseng.github.io/software/repository/github/BartoszBartmanski/StoSpa2",
-	"content": "A C++ software package for stochastic simulations of spatially extended systems"
+	"github/NBISweden/AGAT": {
+	"id": "github/NBISweden/AGAT",
+	"title": "github/NBISweden/AGAT",
+	"url": " https://rseng.github.io/software/repository/github/NBISweden/AGAT",
+	"content": "Another Gtf/Gff Analysis Toolkit"
 	},
-	"github/berczik/phi-GPU-mole": {
-	"id": "github/berczik/phi-GPU-mole",
-	"title": "github/berczik/phi-GPU-mole",
-	"url": " https://rseng.github.io/software/repository/github/berczik/phi-GPU-mole",
-	"content": "Parallel Hermite Integration on GPU (Direct N-body on MOLE-8.5 cluster)"
+	"github/aranyics/ReDCM": {
+	"id": "github/aranyics/ReDCM",
+	"title": "github/aranyics/ReDCM",
+	"url": " https://rseng.github.io/software/repository/github/aranyics/ReDCM",
+	"content": "Reimplementation of DCM12 algorithm in R language"
 	},
-	"github/JakobBD/pounce": {
-	"id": "github/JakobBD/pounce",
-	"title": "github/JakobBD/pounce",
-	"url": " https://rseng.github.io/software/repository/github/JakobBD/pounce",
+	"github/shengjin/Nii": {
+	"id": "github/shengjin/Nii",
+	"title": "github/shengjin/Nii",
+	"url": " https://rseng.github.io/software/repository/github/shengjin/Nii",
+	"content": "The Nii code"
+	},
+	"github/TriPed-Robot/TriP": {
+	"id": "github/TriPed-Robot/TriP",
+	"title": "github/TriPed-Robot/TriP",
+	"url": " https://rseng.github.io/software/repository/github/TriPed-Robot/TriP",
+	"content": "Python package for inverse kinematic calculations of hybrid serial parallel robots"
+	},
+	"github/FunctionalUrology/MLcps": {
+	"id": "github/FunctionalUrology/MLcps",
+	"title": "github/FunctionalUrology/MLcps",
+	"url": " https://rseng.github.io/software/repository/github/FunctionalUrology/MLcps",
 	"content": "None"
 	},
-	"github/sibyllema/Fast-Multiscale-Diffusion-on-Graphs": {
-	"id": "github/sibyllema/Fast-Multiscale-Diffusion-on-Graphs",
-	"title": "github/sibyllema/Fast-Multiscale-Diffusion-on-Graphs",
-	"url": " https://rseng.github.io/software/repository/github/sibyllema/Fast-Multiscale-Diffusion-on-Graphs",
-	"content": "Standalone code to generate the figures for the paper &#34;Fast Multiscale Diffusion on Graphs&#34; accepted at ICASSP 2022."
+	"github/AFD-Illinois/iharm3d": {
+	"id": "github/AFD-Illinois/iharm3d",
+	"title": "github/AFD-Illinois/iharm3d",
+	"url": " https://rseng.github.io/software/repository/github/AFD-Illinois/iharm3d",
+	"content": "Hybrid MPI/OpenMP 3D HARM with vectorization"
 	},
-	"github/jonzink/EDI-Vetter": {
-	"id": "github/jonzink/EDI-Vetter",
-	"title": "github/jonzink/EDI-Vetter",
-	"url": " https://rseng.github.io/software/repository/github/jonzink/EDI-Vetter",
-	"content": "The (Exoplanet Detection Identifier) EDI-Vetter is the rock&#39;n roll love child of Terra and RoboVetter, optimized to vet K2 transit signals."
+	"github/AFD-Illinois/ebhlight": {
+	"id": "github/AFD-Illinois/ebhlight",
+	"title": "github/AFD-Illinois/ebhlight",
+	"url": " https://rseng.github.io/software/repository/github/AFD-Illinois/ebhlight",
+	"content": "Two-temperature General Relativistic Radiation Magnetohydrodynamics"
 	},
-	"github/jonzink/EDI_Vetter_unplugged": {
-	"id": "github/jonzink/EDI_Vetter_unplugged",
-	"title": "github/jonzink/EDI_Vetter_unplugged",
-	"url": " https://rseng.github.io/software/repository/github/jonzink/EDI_Vetter_unplugged",
-	"content": "A compact version of EDI-Vetter, which uses the TLS output to quickly vet transit signals. All your favorite hits in a simplified format."
+	"github/PyLops/pylops-mpi": {
+	"id": "github/PyLops/pylops-mpi",
+	"title": "github/PyLops/pylops-mpi",
+	"url": " https://rseng.github.io/software/repository/github/PyLops/pylops-mpi",
+	"content": "MPI-powered PyLops with MPI4Py"
 	},
-	"github/jacob-long/jtools": {
-	"id": "github/jacob-long/jtools",
-	"title": "github/jacob-long/jtools",
-	"url": " https://rseng.github.io/software/repository/github/jacob-long/jtools",
-	"content": "Tools for summarizing/visualizing regressions and other helpful stuff"
+	"github/CLIMADA-project/climada_python": {
+	"id": "github/CLIMADA-project/climada_python",
+	"title": "github/CLIMADA-project/climada_python",
+	"url": " https://rseng.github.io/software/repository/github/CLIMADA-project/climada_python",
+	"content": "Python (3.8+) version of CLIMADA"
 	},
-	"github/zd1/telseq": {
-	"id": "github/zd1/telseq",
-	"title": "github/zd1/telseq",
-	"url": " https://rseng.github.io/software/repository/github/zd1/telseq",
-	"content": "A software for calculating telomere length"
+	"github/mdsteiner/EFAtools": {
+	"id": "github/mdsteiner/EFAtools",
+	"title": "github/mdsteiner/EFAtools",
+	"url": " https://rseng.github.io/software/repository/github/mdsteiner/EFAtools",
+	"content": "None"
 	},
-	"github/EliabCanul/nauyaca": {
-	"id": "github/EliabCanul/nauyaca",
-	"title": "github/EliabCanul/nauyaca",
-	"url": " https://rseng.github.io/software/repository/github/EliabCanul/nauyaca",
-	"content": "Nauyaca is a tool to determine planetary masses and orbital elements through the fitting of observed mid-transit times, from a N-body approach."
+	"github/HinLeung622/pipes_vis": {
+	"id": "github/HinLeung622/pipes_vis",
+	"title": "github/HinLeung622/pipes_vis",
+	"url": " https://rseng.github.io/software/repository/github/HinLeung622/pipes_vis",
+	"content": "A small, interactive GUI/visualizer tool for SPS spectra, powered by bagpipes"
 	},
-	"github/GeneDx/scramble": {
-	"id": "github/GeneDx/scramble",
-	"title": "github/GeneDx/scramble",
-	"url": " https://rseng.github.io/software/repository/github/GeneDx/scramble",
-	"content": "runs as a two-step process. First cluster_identifier is used to generate soft-clipped read cluster consensus sequences. Second, SCRAMBle-MEIs.R analyzes the cluster file for likely Mobile Element Insertions."
+	"github/exciting/excitingtools": {
+	"id": "github/exciting/excitingtools",
+	"title": "github/exciting/excitingtools",
+	"url": " https://rseng.github.io/software/repository/github/exciting/excitingtools",
+	"content": "An exciting Workflow Tool"
 	},
-	"github/manodeep/Corrfunc": {
-	"id": "github/manodeep/Corrfunc",
-	"title": "github/manodeep/Corrfunc",
-	"url": " https://rseng.github.io/software/repository/github/manodeep/Corrfunc",
-	"content": "⚡️⚡️⚡️Blazing fast correlation functions on the CPU."
+	"github/Michalychforever/CLASS_LVDM": {
+	"id": "github/Michalychforever/CLASS_LVDM",
+	"title": "github/Michalychforever/CLASS_LVDM",
+	"url": " https://rseng.github.io/software/repository/github/Michalychforever/CLASS_LVDM",
+	"content": "CLASS extension that incorporates a model with Lorentz invariance violation in gravity and dark matter"
 	},
-	"github/manodeep/TesseRACt": {
-	"id": "github/manodeep/TesseRACt",
-	"title": "github/manodeep/TesseRACt",
-	"url": " https://rseng.github.io/software/repository/github/manodeep/TesseRACt",
-	"content": "None"
+	"github/Michalychforever/AsPy": {
+	"id": "github/Michalychforever/AsPy",
+	"title": "github/Michalychforever/AsPy",
+	"url": " https://rseng.github.io/software/repository/github/Michalychforever/AsPy",
+	"content": "Code to compute the determinant of aspherical fluctuations in spherical collapse background"
 	},
-	"github/singularityhub/singularity-hpc": {
-	"id": "github/singularityhub/singularity-hpc",
-	"title": "github/singularityhub/singularity-hpc",
-	"url": " https://rseng.github.io/software/repository/github/singularityhub/singularity-hpc",
-	"content": "Local filesystem registry for containers (intended for HPC) using Lmod or Environement Modules. Works for users and admins."
+	"github/zhangxn1026/a-scheme-that-combines-Srun-job-submission-mode-Sbatch-job-submission-mode-and-Monitor-function-SSM-": {
+	"id": "github/zhangxn1026/a-scheme-that-combines-Srun-job-submission-mode-Sbatch-job-submission-mode-and-Monitor-function-SSM-",
+	"title": "github/zhangxn1026/a-scheme-that-combines-Srun-job-submission-mode-Sbatch-job-submission-mode-and-Monitor-function-SSM-",
+	"url": " https://rseng.github.io/software/repository/github/zhangxn1026/a-scheme-that-combines-Srun-job-submission-mode-Sbatch-job-submission-mode-and-Monitor-function-SSM-",
+	"content": "None"
 	},
-	"github/singularityhub/sregistry": {
-	"id": "github/singularityhub/sregistry",
-	"title": "github/singularityhub/sregistry",
-	"url": " https://rseng.github.io/software/repository/github/singularityhub/sregistry",
-	"content": "server for storage and management of singularity images"
+	"github/fredericlemoine/goalign": {
+	"id": "github/fredericlemoine/goalign",
+	"title": "github/fredericlemoine/goalign",
+	"url": " https://rseng.github.io/software/repository/github/fredericlemoine/goalign",
+	"content": "Goalign is a set of command line tools and an API to manipulate multiple alignments. It is implemented in Go language."
 	},
-	"github/singularityhub/singularity-compose": {
-	"id": "github/singularityhub/singularity-compose",
-	"title": "github/singularityhub/singularity-compose",
-	"url": " https://rseng.github.io/software/repository/github/singularityhub/singularity-compose",
-	"content": "orchestration for singularity containers (under development)"
+	"github/jaimedelacruz/stic": {
+	"id": "github/jaimedelacruz/stic",
+	"title": "github/jaimedelacruz/stic",
+	"url": " https://rseng.github.io/software/repository/github/jaimedelacruz/stic",
+	"content": "The Stockholm inversion code"
 	},
-	"github/mateidavid/nanocall": {
-	"id": "github/mateidavid/nanocall",
-	"title": "github/mateidavid/nanocall",
-	"url": " https://rseng.github.io/software/repository/github/mateidavid/nanocall",
-	"content": "An Oxford Nanopore Basecaller"
+	"github/EoRImaging/FHD": {
+	"id": "github/EoRImaging/FHD",
+	"title": "github/EoRImaging/FHD",
+	"url": " https://rseng.github.io/software/repository/github/EoRImaging/FHD",
+	"content": "Fast Holographic Deconvolution"
 	},
-	"github/mateidavid/fast5": {
-	"id": "github/mateidavid/fast5",
-	"title": "github/mateidavid/fast5",
-	"url": " https://rseng.github.io/software/repository/github/mateidavid/fast5",
-	"content": "A C++ header-only library for reading Oxford Nanopore Fast5 files"
+	"github/BiocomputeLab/paraSBOLv": {
+	"id": "github/BiocomputeLab/paraSBOLv",
+	"title": "github/BiocomputeLab/paraSBOLv",
+	"url": " https://rseng.github.io/software/repository/github/BiocomputeLab/paraSBOLv",
+	"content": "A lightweight Python library designed to simplify the development of tools that render SBOL Visual diagrams."
 	},
-	"github/timchurches/NetEpi-Analysis": {
-	"id": "github/timchurches/NetEpi-Analysis",
-	"title": "github/timchurches/NetEpi-Analysis",
-	"url": " https://rseng.github.io/software/repository/github/timchurches/NetEpi-Analysis",
-	"content": "Web-based object-oriented data exploration and analysis system"
+	"github/abschneider/StrainHub": {
+	"id": "github/abschneider/StrainHub",
+	"title": "github/abschneider/StrainHub",
+	"url": " https://rseng.github.io/software/repository/github/abschneider/StrainHub",
+	"content": "Welcome to the StrainHub Repo - Files and Data - StrainHub Online:"
 	},
-	"github/timchurches/NetEpi-Collection": {
-	"id": "github/timchurches/NetEpi-Collection",
-	"title": "github/timchurches/NetEpi-Collection",
-	"url": " https://rseng.github.io/software/repository/github/timchurches/NetEpi-Collection",
-	"content": "Communicable disease and epidemiological data collection and management system"
+	"github/EdoardoCarlesi/cmbeasy": {
+	"id": "github/EdoardoCarlesi/cmbeasy",
+	"title": "github/EdoardoCarlesi/cmbeasy",
+	"url": " https://rseng.github.io/software/repository/github/EdoardoCarlesi/cmbeasy",
+	"content": "My CMBEASY implementation"
 	},
-	"github/pyBRAvo/pyBRAvo": {
-	"id": "github/pyBRAvo/pyBRAvo",
-	"title": "github/pyBRAvo/pyBRAvo",
-	"url": " https://rseng.github.io/software/repository/github/pyBRAvo/pyBRAvo",
-	"content": "None"
+	"github/sherpa-deproject/deproject": {
+	"id": "github/sherpa-deproject/deproject",
+	"title": "github/sherpa-deproject/deproject",
+	"url": " https://rseng.github.io/software/repository/github/sherpa-deproject/deproject",
+	"content": "CIAO Sherpa extension package for deprojection of two-dimensional annular X-ray spectra to recover the three-dimensional source properties."
 	},
-	"github/sonoUnoTeam/sonoUno-desktop": {
-	"id": "github/sonoUnoTeam/sonoUno-desktop",
-	"title": "github/sonoUnoTeam/sonoUno-desktop",
-	"url": " https://rseng.github.io/software/repository/github/sonoUnoTeam/sonoUno-desktop",
-	"content": "SonoUno is a sonification software for astronomical data presented on a table (txt or csv files). The software is being developed based on the study of other software, standards of accessibility like the ISO 9241-171:2008 (Guidance on software accessibility) and theoretical framework based on literature review and end user tests."
+	"github/fastpm/fastpm": {
+	"id": "github/fastpm/fastpm",
+	"title": "github/fastpm/fastpm",
+	"url": " https://rseng.github.io/software/repository/github/fastpm/fastpm",
+	"content": "fastPM - A N-body Particle Mesh solver that scales"
 	},
-	"github/heli-xu/findSVI": {
-	"id": "github/heli-xu/findSVI",
-	"title": "github/heli-xu/findSVI",
-	"url": " https://rseng.github.io/software/repository/github/heli-xu/findSVI",
-	"content": "Calculate CDC/ATSDR Social Vulnerability Index"
+	"github/altjerue/paramo": {
+	"id": "github/altjerue/paramo",
+	"title": "github/altjerue/paramo",
+	"url": " https://rseng.github.io/software/repository/github/altjerue/paramo",
+	"content": "Vine a Comala porque me dijeron que acá vivía mi padre, un tal Pedro Páramo."
 	},
-	"github/micbia/SubgridClumping": {
-	"id": "github/micbia/SubgridClumping",
-	"title": "github/micbia/SubgridClumping",
-	"url": " https://rseng.github.io/software/repository/github/micbia/SubgridClumping",
-	"content": "None"
+	"github/TNOCS/csWeb": {
+	"id": "github/TNOCS/csWeb",
+	"title": "github/TNOCS/csWeb",
+	"url": " https://rseng.github.io/software/repository/github/TNOCS/csWeb",
+	"content": "csWeb, short for common sense Web, is a userfriendly web application for showing (GIS) data on a map. It allows you to apply multiple filters to filter your data, and to style it, so you can immediately see what&#39;s important."
 	},
-	"github/korcsmarosgroup/TFlink": {
-	"id": "github/korcsmarosgroup/TFlink",
-	"title": "github/korcsmarosgroup/TFlink",
-	"url": " https://rseng.github.io/software/repository/github/korcsmarosgroup/TFlink",
-	"content": "Repository for the TFlink.net website."
+	"github/YenWenWang/HapDipKinship": {
+	"id": "github/YenWenWang/HapDipKinship",
+	"title": "github/YenWenWang/HapDipKinship",
+	"url": " https://rseng.github.io/software/repository/github/YenWenWang/HapDipKinship",
+	"content": "Algorithms to estimate kinship in haploid-diploid mixed populations"
 	},
-	"github/korcsmarosgroup/CytokineLink": {
-	"id": "github/korcsmarosgroup/CytokineLink",
-	"title": "github/korcsmarosgroup/CytokineLink",
-	"url": " https://rseng.github.io/software/repository/github/korcsmarosgroup/CytokineLink",
-	"content": "CytokineLink: a map of cytokine communication for inflammatory and infectious diseases"
+	"github/bbuchfink/diamond": {
+	"id": "github/bbuchfink/diamond",
+	"title": "github/bbuchfink/diamond",
+	"url": " https://rseng.github.io/software/repository/github/bbuchfink/diamond",
+	"content": "Accelerated BLAST compatible local sequence aligner."
 	},
-	"github/deniswerth/cosmoflow": {
-	"id": "github/deniswerth/cosmoflow",
-	"title": "github/deniswerth/cosmoflow",
-	"url": " https://rseng.github.io/software/repository/github/deniswerth/cosmoflow",
-	"content": "The Cosmological Flow -- a systematic approach to primordial correlators"
+	"github/SMTG-UCL/surfaxe": {
+	"id": "github/SMTG-UCL/surfaxe",
+	"title": "github/SMTG-UCL/surfaxe",
+	"url": " https://rseng.github.io/software/repository/github/SMTG-UCL/surfaxe",
+	"content": "Dealing with slabs for first principles calculations of surfaces"
 	},
-	"github/jolie/tquery": {
-	"id": "github/jolie/tquery",
-	"title": "github/jolie/tquery",
-	"url": " https://rseng.github.io/software/repository/github/jolie/tquery",
-	"content": "A data-query framework based on a sound variant of the MongoDB aggregation framework"
+	"github/SMTG-UCL/ShakeNBreak": {
+	"id": "github/SMTG-UCL/ShakeNBreak",
+	"title": "github/SMTG-UCL/ShakeNBreak",
+	"url": " https://rseng.github.io/software/repository/github/SMTG-UCL/ShakeNBreak",
+	"content": "Defect structure-searching method employing chemically-guided bond distortions to locate ground-state and metastable structures of point defects in solid materials."
 	},
-	"github/mrilikecoding/StreamPoseML": {
-	"id": "github/mrilikecoding/StreamPoseML",
-	"title": "github/mrilikecoding/StreamPoseML",
-	"url": " https://rseng.github.io/software/repository/github/mrilikecoding/StreamPoseML",
-	"content": "pose estimation / ML model wrapper and annotation utility"
+	"github/edwardoughton/itmlogic": {
+	"id": "github/edwardoughton/itmlogic",
+	"title": "github/edwardoughton/itmlogic",
+	"url": " https://rseng.github.io/software/repository/github/edwardoughton/itmlogic",
+	"content": "Longley-Rice Irregular Terrain Model (itmlogic)"
 	},
-	"github/marccanby/linguiphyr": {
-	"id": "github/marccanby/linguiphyr",
-	"title": "github/marccanby/linguiphyr",
-	"url": " https://rseng.github.io/software/repository/github/marccanby/linguiphyr",
-	"content": "Linguistic Phylogenetic Analysis in R"
+	"github/Valar-hub/MMLPhoto-z": {
+	"id": "github/Valar-hub/MMLPhoto-z",
+	"title": "github/Valar-hub/MMLPhoto-z",
+	"url": " https://rseng.github.io/software/repository/github/Valar-hub/MMLPhoto-z",
+	"content": "None"
 	},
-	"github/JuliaOcean/AIBECS.jl": {
-	"id": "github/JuliaOcean/AIBECS.jl",
-	"title": "github/JuliaOcean/AIBECS.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaOcean/AIBECS.jl",
-	"content": "The ideal tool for exploring global marine biogeochemical cycles."
+	"github/JieweiHuang/Coport": {
+	"id": "github/JieweiHuang/Coport",
+	"title": "github/JieweiHuang/Coport",
+	"url": " https://rseng.github.io/software/repository/github/JieweiHuang/Coport",
+	"content": "A Covariant Polarized Radiative Transfer  Code"
 	},
-	"github/JuliaOcean/PlanktonIndividuals.jl": {
-	"id": "github/JuliaOcean/PlanktonIndividuals.jl",
-	"title": "github/JuliaOcean/PlanktonIndividuals.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaOcean/PlanktonIndividuals.jl",
-	"content": "This package simulates the behaviors of an ensemble of phytoplankton individuals."
+	"github/caracal-pipeline/caracal": {
+	"id": "github/caracal-pipeline/caracal",
+	"title": "github/caracal-pipeline/caracal",
+	"url": " https://rseng.github.io/software/repository/github/caracal-pipeline/caracal",
+	"content": "Containerized Automated Radio Astronomy Calibration (CARACal) pipeline "
 	},
-	"github/vimc/dettl": {
-	"id": "github/vimc/dettl",
-	"title": "github/vimc/dettl",
-	"url": " https://rseng.github.io/software/repository/github/vimc/dettl",
-	"content": ":bar_chart::shower: Data extract, transform, test and load"
+	"github/caracal-pipeline/stimela": {
+	"id": "github/caracal-pipeline/stimela",
+	"title": "github/caracal-pipeline/stimela",
+	"url": " https://rseng.github.io/software/repository/github/caracal-pipeline/stimela",
+	"content": "Stimela 2.0"
 	},
-	"github/vimc/orderly": {
-	"id": "github/vimc/orderly",
-	"title": "github/vimc/orderly",
-	"url": " https://rseng.github.io/software/repository/github/vimc/orderly",
-	"content": ":hospital::ambulance: Lightweight Reproducible Reporting for R"
+	"github/nickrodd/HDMSpectra": {
+	"id": "github/nickrodd/HDMSpectra",
+	"title": "github/nickrodd/HDMSpectra",
+	"url": " https://rseng.github.io/software/repository/github/nickrodd/HDMSpectra",
+	"content": "Dark Matter Spectra from the Electroweak to the Planck Scale"
 	},
-	"github/vimc/vaultr": {
-	"id": "github/vimc/vaultr",
-	"title": "github/vimc/vaultr",
-	"url": " https://rseng.github.io/software/repository/github/vimc/vaultr",
-	"content": ":lock: API client for Hashicorp&#39;s vault (https://www.vaultproject.io/)"
+	"github/fkeruzore/panco2": {
+	"id": "github/fkeruzore/panco2",
+	"title": "github/fkeruzore/panco2",
+	"url": " https://rseng.github.io/software/repository/github/fkeruzore/panco2",
+	"content": "A Python library for pressure profile measurements in SZ observations of galaxy clusters."
 	},
-	"github/Midnighter/dependency-info": {
-	"id": "github/Midnighter/dependency-info",
-	"title": "github/Midnighter/dependency-info",
-	"url": " https://rseng.github.io/software/repository/github/Midnighter/dependency-info",
-	"content": "Retrieve and print Python package dependencies."
+	"github/devsim/devsim": {
+	"id": "github/devsim/devsim",
+	"title": "github/devsim/devsim",
+	"url": " https://rseng.github.io/software/repository/github/devsim/devsim",
+	"content": "TCAD Semiconductor Device Simulator"
 	},
-	"github/UNSW-CEEM/nempy": {
-	"id": "github/UNSW-CEEM/nempy",
-	"title": "github/UNSW-CEEM/nempy",
-	"url": " https://rseng.github.io/software/repository/github/UNSW-CEEM/nempy",
-	"content": "A flexible tool kit for modelling Australia&#39;s National Electricity Market dispatch procedure."
+	"github/SKA-INAF/caesar-rest": {
+	"id": "github/SKA-INAF/caesar-rest",
+	"title": "github/SKA-INAF/caesar-rest",
+	"url": " https://rseng.github.io/software/repository/github/SKA-INAF/caesar-rest",
+	"content": "Rest API for caesar source finder application"
 	},
-	"github/UNSW-CEEM/NEMSEER": {
-	"id": "github/UNSW-CEEM/NEMSEER",
-	"title": "github/UNSW-CEEM/NEMSEER",
-	"url": " https://rseng.github.io/software/repository/github/UNSW-CEEM/NEMSEER",
-	"content": "A package for downloading and handling forecasts for the National Electricity Market (NEM) from the Australian Energy Market Operator (AEMO)."
+	"github/BorgwardtLab/simbsig": {
+	"id": "github/BorgwardtLab/simbsig",
+	"title": "github/BorgwardtLab/simbsig",
+	"url": " https://rseng.github.io/software/repository/github/BorgwardtLab/simbsig",
+	"content": "The official implementation for the SIMBSIG package"
 	},
-	"github/junkoda/cola_halo": {
-	"id": "github/junkoda/cola_halo",
-	"title": "github/junkoda/cola_halo",
-	"url": " https://rseng.github.io/software/repository/github/junkoda/cola_halo",
-	"content": "Parallel COLA cosmological simulation + 2LPT initial condition generator + FoF halo finder"
+	"github/AndreyTavleev/DiscVerSt": {
+	"id": "github/AndreyTavleev/DiscVerSt",
+	"title": "github/AndreyTavleev/DiscVerSt",
+	"url": " https://rseng.github.io/software/repository/github/AndreyTavleev/DiscVerSt",
+	"content": "Code calculates vertical structure of accretion discs around neutron stars and black holes."
 	},
-	"github/junkoda/sidm-nbody": {
-	"id": "github/junkoda/sidm-nbody",
-	"title": "github/junkoda/sidm-nbody",
-	"url": " https://rseng.github.io/software/repository/github/junkoda/sidm-nbody",
-	"content": "Monte Carlo N-body Simulation for Self-Interacting Dark Matter"
+	"github/emunte/vaRHC": {
+	"id": "github/emunte/vaRHC",
+	"title": "github/emunte/vaRHC",
+	"url": " https://rseng.github.io/software/repository/github/emunte/vaRHC",
+	"content": "None"
 	},
-	"github/guilledufort/EnanoFASTQ": {
-	"id": "github/guilledufort/EnanoFASTQ",
-	"title": "github/guilledufort/EnanoFASTQ",
-	"url": " https://rseng.github.io/software/repository/github/guilledufort/EnanoFASTQ",
-	"content": "A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files."
+	"github/waynebhayes/SpArcFiRe": {
+	"id": "github/waynebhayes/SpArcFiRe",
+	"title": "github/waynebhayes/SpArcFiRe",
+	"url": " https://rseng.github.io/software/repository/github/waynebhayes/SpArcFiRe",
+	"content": "SPiral ARC FInder and REporter - find spiral arcs in galaxies.... or maybe hurricanes too?"
 	},
-	"github/guilledufort/EMVC-2": {
-	"id": "github/guilledufort/EMVC-2",
-	"title": "github/guilledufort/EMVC-2",
-	"url": " https://rseng.github.io/software/repository/github/guilledufort/EMVC-2",
-	"content": "An efficient SNV variant caller based on the expectation maximization algorithm. EMVC-2 is implemented in C and uses a python wrapper."
+	"github/rnikutta/rhocube": {
+	"id": "github/rnikutta/rhocube",
+	"title": "github/rnikutta/rhocube",
+	"url": " https://rseng.github.io/software/repository/github/rnikutta/rhocube",
+	"content": "Compute 3D density models, and integrate over dz if requested"
 	},
-	"github/pysat/pysat": {
-	"id": "github/pysat/pysat",
-	"title": "github/pysat/pysat",
-	"url": " https://rseng.github.io/software/repository/github/pysat/pysat",
-	"content": "Generalized satellite and space science data processing and file management. "
+	"github/WGS-TB/MentaLiST": {
+	"id": "github/WGS-TB/MentaLiST",
+	"title": "github/WGS-TB/MentaLiST",
+	"url": " https://rseng.github.io/software/repository/github/WGS-TB/MentaLiST",
+	"content": "The MLST pipeline developed by the PathOGiST research group"
 	},
-	"github/loneknightpy/idba": {
-	"id": "github/loneknightpy/idba",
-	"title": "github/loneknightpy/idba",
-	"url": " https://rseng.github.io/software/repository/github/loneknightpy/idba",
-	"content": "iterative De Bruijn Graph short read assemblers"
+	"github/deepmedic/deepmedic": {
+	"id": "github/deepmedic/deepmedic",
+	"title": "github/deepmedic/deepmedic",
+	"url": " https://rseng.github.io/software/repository/github/deepmedic/deepmedic",
+	"content": "Efficient Multi-Scale 3D Convolutional Neural Network for Segmentation of 3D Medical Scans"
 	},
-	"github/MP-Gadget/bigfile": {
-	"id": "github/MP-Gadget/bigfile",
-	"title": "github/MP-Gadget/bigfile",
-	"url": " https://rseng.github.io/software/repository/github/MP-Gadget/bigfile",
-	"content": "A reproducible massively parallel IO library for hierarchical data"
+	"github/FlorianThibord/OptimiR": {
+	"id": "github/FlorianThibord/OptimiR",
+	"title": "github/FlorianThibord/OptimiR",
+	"url": " https://rseng.github.io/software/repository/github/FlorianThibord/OptimiR",
+	"content": "miRSeq data alignment workflow - integrates genetic information to assess the impact of variants on miRNA expression"
 	},
-	"github/andyphilips/dynamac": {
-	"id": "github/andyphilips/dynamac",
-	"title": "github/andyphilips/dynamac",
-	"url": " https://rseng.github.io/software/repository/github/andyphilips/dynamac",
-	"content": "Dynamic simulation and testing for single-equation ARDL models, available for both R and Stata"
+	"github/healytwin1/HISS": {
+	"id": "github/healytwin1/HISS",
+	"title": "github/healytwin1/HISS",
+	"url": " https://rseng.github.io/software/repository/github/healytwin1/HISS",
+	"content": "HI Stacking Software"
 	},
-	"github/Gaius-Augustus/BRAKER": {
-	"id": "github/Gaius-Augustus/BRAKER",
-	"title": "github/Gaius-Augustus/BRAKER",
-	"url": " https://rseng.github.io/software/repository/github/Gaius-Augustus/BRAKER",
-	"content": "BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes"
+	"github/biobakery/MetaPhlAn": {
+	"id": "github/biobakery/MetaPhlAn",
+	"title": "github/biobakery/MetaPhlAn",
+	"url": " https://rseng.github.io/software/repository/github/biobakery/MetaPhlAn",
+	"content": "MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data"
 	},
-	"github/Gaius-Augustus/Tiberius": {
-	"id": "github/Gaius-Augustus/Tiberius",
-	"title": "github/Gaius-Augustus/Tiberius",
-	"url": " https://rseng.github.io/software/repository/github/Gaius-Augustus/Tiberius",
-	"content": "deep learning gene finder"
+	"github/biobakery/halla": {
+	"id": "github/biobakery/halla",
+	"title": "github/biobakery/halla",
+	"url": " https://rseng.github.io/software/repository/github/biobakery/halla",
+	"content": "None"
 	},
-	"github/Gaius-Augustus/GALBA": {
-	"id": "github/Gaius-Augustus/GALBA",
-	"title": "github/Gaius-Augustus/GALBA",
-	"url": " https://rseng.github.io/software/repository/github/Gaius-Augustus/GALBA",
-	"content": "GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from a closely related species are available."
+	"github/biobakery/phylophlan": {
+	"id": "github/biobakery/phylophlan",
+	"title": "github/biobakery/phylophlan",
+	"url": " https://rseng.github.io/software/repository/github/biobakery/phylophlan",
+	"content": "Precise phylogenetic analysis of microbial isolates and genomes from metagenomes"
 	},
-	"github/vbakis/mrs": {
-	"id": "github/vbakis/mrs",
-	"title": "github/vbakis/mrs",
-	"url": " https://rseng.github.io/software/repository/github/vbakis/mrs",
-	"content": "This repository is created for the MOS Reduction Software."
+	"github/PyTomography/slicer_spect_recon": {
+	"id": "github/PyTomography/slicer_spect_recon",
+	"title": "github/PyTomography/slicer_spect_recon",
+	"url": " https://rseng.github.io/software/repository/github/PyTomography/slicer_spect_recon",
+	"content": "3d slicer extension for pytomography to enable easy reconstruction of SPECT images"
 	},
-	"github/databio/GenomicDistributions": {
-	"id": "github/databio/GenomicDistributions",
-	"title": "github/databio/GenomicDistributions",
-	"url": " https://rseng.github.io/software/repository/github/databio/GenomicDistributions",
-	"content": "Calculate and plot distributions of genomic ranges"
+	"github/jonathanHuwP/CrystalGrowthTracker": {
+	"id": "github/jonathanHuwP/CrystalGrowthTracker",
+	"title": "github/jonathanHuwP/CrystalGrowthTracker",
+	"url": " https://rseng.github.io/software/repository/github/jonathanHuwP/CrystalGrowthTracker",
+	"content": "Extract face growth rate data from x-ray video of growing crystals."
 	},
-	"github/mkargo/pipeline": {
-	"id": "github/mkargo/pipeline",
-	"title": "github/mkargo/pipeline",
-	"url": " https://rseng.github.io/software/repository/github/mkargo/pipeline",
-	"content": "Data reduction pipeline for e-MERLIN"
+	"github/marseille-proteomique/DIAgui": {
+	"id": "github/marseille-proteomique/DIAgui",
+	"title": "github/marseille-proteomique/DIAgui",
+	"url": " https://rseng.github.io/software/repository/github/marseille-proteomique/DIAgui",
+	"content": "An interactive shiny app for processing DIA-nn output (filtering, MaxLFQ, Top3, iBAQ, etc.)"
 	},
-	"github/champsproject/ldds": {
-	"id": "github/champsproject/ldds",
-	"title": "github/champsproject/ldds",
-	"url": " https://rseng.github.io/software/repository/github/champsproject/ldds",
-	"content": "Python package for computing and visualizing Lagrangian Descriptors in Dynamical Systems"
+	"github/dvallesp/vortex": {
+	"id": "github/dvallesp/vortex",
+	"title": "github/dvallesp/vortex",
+	"url": " https://rseng.github.io/software/repository/github/dvallesp/vortex",
+	"content": "Implements Helmholtz-Hodge decomposition for an AMR velocity field"
 	},
-	"github/gpantel/MolPainter": {
-	"id": "github/gpantel/MolPainter",
-	"title": "github/gpantel/MolPainter",
-	"url": " https://rseng.github.io/software/repository/github/gpantel/MolPainter",
-	"content": "A Tool for Drawing Complex Planar Molecular Systems of Arbitrary Composition and Placement"
+	"github/dvallesp/vortex-p": {
+	"id": "github/dvallesp/vortex-p",
+	"title": "github/dvallesp/vortex-p",
+	"url": " https://rseng.github.io/software/repository/github/dvallesp/vortex-p",
+	"content": "Implements a Helmholtz-Hodge decomposition and a Reynolds decomposition for the velocity field of general particle-based simulation outputs"
 	},
-	"github/cosmoinin/MGPT": {
-	"id": "github/cosmoinin/MGPT",
-	"title": "github/cosmoinin/MGPT",
-	"url": " https://rseng.github.io/software/repository/github/cosmoinin/MGPT",
-	"content": "Modified gravity perturbation theory code"
+	"github/dvallesp/asohf": {
+	"id": "github/dvallesp/asohf",
+	"title": "github/dvallesp/asohf",
+	"url": " https://rseng.github.io/software/repository/github/dvallesp/asohf",
+	"content": "Adaptive Spherical Overdensity Halo Finder (Planelles &amp; Quilis, 2010. A&amp;A, 519:A94; Vallés-Pérez, Planelles &amp; Quilis, 2022. A&amp;A in press)"
 	},
-	"github/vferat/pycrostates": {
-	"id": "github/vferat/pycrostates",
-	"title": "github/vferat/pycrostates",
-	"url": " https://rseng.github.io/software/repository/github/vferat/pycrostates",
+	"github/hsergi/Roman_Coronagraph_ETC": {
+	"id": "github/hsergi/Roman_Coronagraph_ETC",
+	"title": "github/hsergi/Roman_Coronagraph_ETC",
+	"url": " https://rseng.github.io/software/repository/github/hsergi/Roman_Coronagraph_ETC",
+	"content": "Exposure Time Calculator for the Roman Coronagraph Instrument"
+	},
+	"github/iain-mcdonald/PySSED": {
+	"id": "github/iain-mcdonald/PySSED",
+	"title": "github/iain-mcdonald/PySSED",
+	"url": " https://rseng.github.io/software/repository/github/iain-mcdonald/PySSED",
 	"content": "None"
 	},
-	"github/blind-contours/CVtreeMLE": {
-	"id": "github/blind-contours/CVtreeMLE",
-	"title": "github/blind-contours/CVtreeMLE",
-	"url": " https://rseng.github.io/software/repository/github/blind-contours/CVtreeMLE",
-	"content": ":deciduous_tree: :dart: Cross Validated Decision Trees with Targeted Maximum Likelihood Estimation"
+	"github/timchurches/NetEpi-Collection": {
+	"id": "github/timchurches/NetEpi-Collection",
+	"title": "github/timchurches/NetEpi-Collection",
+	"url": " https://rseng.github.io/software/repository/github/timchurches/NetEpi-Collection",
+	"content": "Communicable disease and epidemiological data collection and management system"
 	},
-	"github/blind-contours/SuperNOVA": {
-	"id": "github/blind-contours/SuperNOVA",
-	"title": "github/blind-contours/SuperNOVA",
-	"url": " https://rseng.github.io/software/repository/github/blind-contours/SuperNOVA",
-	"content": ":dizzy: :dart: Automatic identification of variable and interaction importance using basis functions and non-parametric estimation of interactions/effect modification using joint stochastic interventions."
+	"github/timchurches/NetEpi-Analysis": {
+	"id": "github/timchurches/NetEpi-Analysis",
+	"title": "github/timchurches/NetEpi-Analysis",
+	"url": " https://rseng.github.io/software/repository/github/timchurches/NetEpi-Analysis",
+	"content": "Web-based object-oriented data exploration and analysis system"
 	},
-	"github/ekaterinailin/AltaiPony": {
-	"id": "github/ekaterinailin/AltaiPony",
-	"title": "github/ekaterinailin/AltaiPony",
-	"url": " https://rseng.github.io/software/repository/github/ekaterinailin/AltaiPony",
-	"content": "Find flares in Kepler, K2, and TESS light curves. Notebooks for quickstart inside."
+	"github/dfm/exopop": {
+	"id": "github/dfm/exopop",
+	"title": "github/dfm/exopop",
+	"url": " https://rseng.github.io/software/repository/github/dfm/exopop",
+	"content": "Inferring the population of exoplanets"
 	},
-	"github/RongquanWang/ELF-DPC": {
-	"id": "github/RongquanWang/ELF-DPC",
-	"title": "github/RongquanWang/ELF-DPC",
-	"url": " https://rseng.github.io/software/repository/github/RongquanWang/ELF-DPC",
-	"content": "An ensemble learning framework for detecting protein complexes from PPI networks"
+	"github/dfm/corner.py": {
+	"id": "github/dfm/corner.py",
+	"title": "github/dfm/corner.py",
+	"url": " https://rseng.github.io/software/repository/github/dfm/corner.py",
+	"content": "Make some beautiful corner plots"
 	},
-	"github/parmoo/parmoo": {
-	"id": "github/parmoo/parmoo",
-	"title": "github/parmoo/parmoo",
-	"url": " https://rseng.github.io/software/repository/github/parmoo/parmoo",
-	"content": "Python library for parallel multiobjective simulation optimization"
+	"github/dfm/celerite": {
+	"id": "github/dfm/celerite",
+	"title": "github/dfm/celerite",
+	"url": " https://rseng.github.io/software/repository/github/dfm/celerite",
+	"content": "Scalable 1D Gaussian Processes in C++, Python, and Julia"
 	},
-	"github/nitadori/SCF-FDPS": {
-	"id": "github/nitadori/SCF-FDPS",
-	"title": "github/nitadori/SCF-FDPS",
-	"url": " https://rseng.github.io/software/repository/github/nitadori/SCF-FDPS",
-	"content": "None"
+	"github/dfm/ketu": {
+	"id": "github/dfm/ketu",
+	"title": "github/dfm/ketu",
+	"url": " https://rseng.github.io/software/repository/github/dfm/ketu",
+	"content": "I can haz planetz?"
 	},
-	"github/facebookresearch/faiss": {
-	"id": "github/facebookresearch/faiss",
-	"title": "github/facebookresearch/faiss",
-	"url": " https://rseng.github.io/software/repository/github/facebookresearch/faiss",
-	"content": "A library for efficient similarity search and clustering of dense vectors."
+	"github/dfm/photodynam": {
+	"id": "github/dfm/photodynam",
+	"title": "github/dfm/photodynam",
+	"url": " https://rseng.github.io/software/repository/github/dfm/photodynam",
+	"content": "Photodynamical code for fitting the light curves of multiple body systems written by Josh Carter"
 	},
-	"github/facebookresearch/segment-anything": {
-	"id": "github/facebookresearch/segment-anything",
-	"title": "github/facebookresearch/segment-anything",
-	"url": " https://rseng.github.io/software/repository/github/facebookresearch/segment-anything",
-	"content": "The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model."
+	"github/jimmink/argslab": {
+	"id": "github/jimmink/argslab",
+	"title": "github/jimmink/argslab",
+	"url": " https://rseng.github.io/software/repository/github/jimmink/argslab",
+	"content": "Repository for ArGSLab, Arrested and Gelated Structures Laboratory."
 	},
-	"github/HUST-NingKang-Lab/ONN4MST": {
-	"id": "github/HUST-NingKang-Lab/ONN4MST",
-	"title": "github/HUST-NingKang-Lab/ONN4MST",
-	"url": " https://rseng.github.io/software/repository/github/HUST-NingKang-Lab/ONN4MST",
-	"content": "Ontology-aware Neural Network for Mircobiome Data Mining!"
+	"github/soerenslarsen/ISPy3": {
+	"id": "github/soerenslarsen/ISPy3",
+	"title": "github/soerenslarsen/ISPy3",
+	"url": " https://rseng.github.io/software/repository/github/soerenslarsen/ISPy3",
+	"content": "Tools for Integrated-light Spectroscopy with Python3"
 	},
-	"github/maickrau/MBG": {
-	"id": "github/maickrau/MBG",
-	"title": "github/maickrau/MBG",
-	"url": " https://rseng.github.io/software/repository/github/maickrau/MBG",
-	"content": "Minimizer based sparse de Bruijn graph constructor."
+	"github/scverse/anndata": {
+	"id": "github/scverse/anndata",
+	"title": "github/scverse/anndata",
+	"url": " https://rseng.github.io/software/repository/github/scverse/anndata",
+	"content": "Annotated data."
 	},
-	"github/maickrau/GraphAligner": {
-	"id": "github/maickrau/GraphAligner",
-	"title": "github/maickrau/GraphAligner",
-	"url": " https://rseng.github.io/software/repository/github/maickrau/GraphAligner",
-	"content": "Sequence to graph aligner for long reads"
+	"github/scverse/muon": {
+	"id": "github/scverse/muon",
+	"title": "github/scverse/muon",
+	"url": " https://rseng.github.io/software/repository/github/scverse/muon",
+	"content": "muon is a multimodal omics Python framework"
 	},
-	"github/GENtle-persons/gentle-m": {
-	"id": "github/GENtle-persons/gentle-m",
-	"title": "github/GENtle-persons/gentle-m",
-	"url": " https://rseng.github.io/software/repository/github/GENtle-persons/gentle-m",
-	"content": "None"
+	"github/xinyiguan/py2lispIDyOM": {
+	"id": "github/xinyiguan/py2lispIDyOM",
+	"title": "github/xinyiguan/py2lispIDyOM",
+	"url": " https://rseng.github.io/software/repository/github/xinyiguan/py2lispIDyOM",
+	"content": "A Python package for IDyOM"
 	},
-	"github/jspsych/jspsych": {
-	"id": "github/jspsych/jspsych",
-	"title": "github/jspsych/jspsych",
-	"url": " https://rseng.github.io/software/repository/github/jspsych/jspsych",
-	"content": "Create behavioral experiments in a browser using JavaScript"
+	"github/Via-Appia/via-appia-online-viewer": {
+	"id": "github/Via-Appia/via-appia-online-viewer",
+	"title": "github/Via-Appia/via-appia-online-viewer",
+	"url": " https://rseng.github.io/software/repository/github/Via-Appia/via-appia-online-viewer",
+	"content": "Via Appia viewer application"
 	},
-	"github/Ayuei/DeBEIR": {
-	"id": "github/Ayuei/DeBEIR",
-	"title": "github/Ayuei/DeBEIR",
-	"url": " https://rseng.github.io/software/repository/github/Ayuei/DeBEIR",
-	"content": "Dense Bi-Encoder Retrieval for Rapid Experimentation"
+	"github/dparkins/CosmoNest": {
+	"id": "github/dparkins/CosmoNest",
+	"title": "github/dparkins/CosmoNest",
+	"url": " https://rseng.github.io/software/repository/github/dparkins/CosmoNest",
+	"content": "Cosmological Nested Sampling (to be used with cosmomc)"
 	},
-	"github/Climdyn/qgs": {
-	"id": "github/Climdyn/qgs",
-	"title": "github/Climdyn/qgs",
-	"url": " https://rseng.github.io/software/repository/github/Climdyn/qgs",
-	"content": "A 2-layer quasi-geostrophic atmospheric model in Python. Can be coupled to a simple land or shallow-water ocean component."
+	"github/biosimulations/Biosimulations": {
+	"id": "github/biosimulations/Biosimulations",
+	"title": "github/biosimulations/Biosimulations",
+	"url": " https://rseng.github.io/software/repository/github/biosimulations/Biosimulations",
+	"content": "Platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results"
 	},
-	"github/casacore/casacore": {
-	"id": "github/casacore/casacore",
-	"title": "github/casacore/casacore",
-	"url": " https://rseng.github.io/software/repository/github/casacore/casacore",
-	"content": "Suite of C++ libraries for radio astronomy data processing"
+	"github/labjg/fibmeasure": {
+	"id": "github/labjg/fibmeasure",
+	"title": "github/labjg/fibmeasure",
+	"url": " https://rseng.github.io/software/repository/github/labjg/fibmeasure",
+	"content": "Python/Cython module to find the centre of back-illuminated optical fibres in metrology images"
 	},
-	"github/JacobBumgarner/VesselVio": {
-	"id": "github/JacobBumgarner/VesselVio",
-	"title": "github/JacobBumgarner/VesselVio",
-	"url": " https://rseng.github.io/software/repository/github/JacobBumgarner/VesselVio",
-	"content": "VesselVio is an open-source application for the analysis and visualization of segmented vasculature datasets"
+	"github/damienmarsic/Parent-map": {
+	"id": "github/damienmarsic/Parent-map",
+	"title": "github/damienmarsic/Parent-map",
+	"url": " https://rseng.github.io/software/repository/github/damienmarsic/Parent-map",
+	"content": "Analyze parental contributions to evolved or engineered protein or DNA sequences"
 	},
-	"github/ziyewang/MetaBinner": {
-	"id": "github/ziyewang/MetaBinner",
-	"title": "github/ziyewang/MetaBinner",
-	"url": " https://rseng.github.io/software/repository/github/ziyewang/MetaBinner",
+	"github/JakobBD/pounce": {
+	"id": "github/JakobBD/pounce",
+	"title": "github/JakobBD/pounce",
+	"url": " https://rseng.github.io/software/repository/github/JakobBD/pounce",
 	"content": "None"
 	},
-	"github/ziyewang/ARG_SHINE": {
-	"id": "github/ziyewang/ARG_SHINE",
-	"title": "github/ziyewang/ARG_SHINE",
-	"url": " https://rseng.github.io/software/repository/github/ziyewang/ARG_SHINE",
+	"github/pepkit/geofetch": {
+	"id": "github/pepkit/geofetch",
+	"title": "github/pepkit/geofetch",
+	"url": " https://rseng.github.io/software/repository/github/pepkit/geofetch",
+	"content": "Builds a PEP from SRA or GEO accessions"
+	},
+	"github/mraveri/tensiometer": {
+	"id": "github/mraveri/tensiometer",
+	"title": "github/mraveri/tensiometer",
+	"url": " https://rseng.github.io/software/repository/github/mraveri/tensiometer",
 	"content": "None"
 	},
-	"github/RomainFeron/mwga-utils": {
-	"id": "github/RomainFeron/mwga-utils",
-	"title": "github/RomainFeron/mwga-utils",
-	"url": " https://rseng.github.io/software/repository/github/RomainFeron/mwga-utils",
-	"content": "Collection of utilities for processing Multispecies Whole Genome Alignments "
+	"github/OP2/PyOP2": {
+	"id": "github/OP2/PyOP2",
+	"title": "github/OP2/PyOP2",
+	"url": " https://rseng.github.io/software/repository/github/OP2/PyOP2",
+	"content": "Framework for performance-portable parallel computations on unstructured meshes"
 	},
-	"github/mikejohnson51/AHGestimation": {
-	"id": "github/mikejohnson51/AHGestimation",
-	"title": "github/mikejohnson51/AHGestimation",
-	"url": " https://rseng.github.io/software/repository/github/mikejohnson51/AHGestimation",
-	"content": "Estimating robust, mass conserving AHG relationships"
+	"github/JuliaMatrices/LazyBandedMatrices.jl": {
+	"id": "github/JuliaMatrices/LazyBandedMatrices.jl",
+	"title": "github/JuliaMatrices/LazyBandedMatrices.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaMatrices/LazyBandedMatrices.jl",
+	"content": "A Julia package for lazy banded matrices"
 	},
-	"github/delphes/delphes": {
-	"id": "github/delphes/delphes",
-	"title": "github/delphes/delphes",
-	"url": " https://rseng.github.io/software/repository/github/delphes/delphes",
-	"content": "A framework for fast simulation of a generic collider experiment"
+	"github/JuliaMatrices/BlockBandedMatrices.jl": {
+	"id": "github/JuliaMatrices/BlockBandedMatrices.jl",
+	"title": "github/JuliaMatrices/BlockBandedMatrices.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaMatrices/BlockBandedMatrices.jl",
+	"content": "A Julia package for representing block-banded matrices and banded-block-banded matrices"
 	},
-	"github/gromacs/gromacs": {
-	"id": "github/gromacs/gromacs",
-	"title": "github/gromacs/gromacs",
-	"url": " https://rseng.github.io/software/repository/github/gromacs/gromacs",
-	"content": "Public/backup repository of the GROMACS molecular simulation toolkit. Please do not mine the metadata blindly; we use https://gitlab.com/gromacs/gromacs for code review and issue tracking."
+	"github/JuliaMatrices/BandedMatrices.jl": {
+	"id": "github/JuliaMatrices/BandedMatrices.jl",
+	"title": "github/JuliaMatrices/BandedMatrices.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaMatrices/BandedMatrices.jl",
+	"content": "A Julia package for representing banded matrices"
 	},
-	"github/TNEL-UCSD/autolfads-deploy": {
-	"id": "github/TNEL-UCSD/autolfads-deploy",
-	"title": "github/TNEL-UCSD/autolfads-deploy",
-	"url": " https://rseng.github.io/software/repository/github/TNEL-UCSD/autolfads-deploy",
-	"content": "Deployment strategies for AutoLFADS"
+	"github/fuyw-aisw/GALA": {
+	"id": "github/fuyw-aisw/GALA",
+	"title": "github/fuyw-aisw/GALA",
+	"url": " https://rseng.github.io/software/repository/github/fuyw-aisw/GALA",
+	"content": "None"
 	},
-	"github/moead-framework/framework": {
-	"id": "github/moead-framework/framework",
-	"title": "github/moead-framework/framework",
-	"url": " https://rseng.github.io/software/repository/github/moead-framework/framework",
-	"content": "MOEA/D is a general-purpose algorithm framework. It decomposes a multi-objective optimization problem into a number of single-objective optimization sub-problems and then uses a search heuristic to optimize these sub-problems simultaneously and cooperatively."
+	"github/florian-lienhard/MM-LSD": {
+	"id": "github/florian-lienhard/MM-LSD",
+	"title": "github/florian-lienhard/MM-LSD",
+	"url": " https://rseng.github.io/software/repository/github/florian-lienhard/MM-LSD",
+	"content": "None"
 	},
-	"github/hippylib/soupy": {
-	"id": "github/hippylib/soupy",
-	"title": "github/hippylib/soupy",
-	"url": " https://rseng.github.io/software/repository/github/hippylib/soupy",
-	"content": "Stochastic Optimization under Uncertainty in Python."
+	"github/tdaylan/pcat": {
+	"id": "github/tdaylan/pcat",
+	"title": "github/tdaylan/pcat",
+	"url": " https://rseng.github.io/software/repository/github/tdaylan/pcat",
+	"content": "A transdimensional, hierarchical, Bayesian framework to sample from a metamodel"
 	},
-	"github/Kingsford-Group/scallop": {
-	"id": "github/Kingsford-Group/scallop",
-	"title": "github/Kingsford-Group/scallop",
-	"url": " https://rseng.github.io/software/repository/github/Kingsford-Group/scallop",
-	"content": "Scallop is a reference-based transcriptome assembler for RNA-seq"
+	"github/trygvrad/DF-XRM_viz": {
+	"id": "github/trygvrad/DF-XRM_viz",
+	"title": "github/trygvrad/DF-XRM_viz",
+	"url": " https://rseng.github.io/software/repository/github/trygvrad/DF-XRM_viz",
+	"content": "Visualization of DF-XRM"
 	},
-	"github/pikarpov-LANL/Sapsan": {
-	"id": "github/pikarpov-LANL/Sapsan",
-	"title": "github/pikarpov-LANL/Sapsan",
-	"url": " https://rseng.github.io/software/repository/github/pikarpov-LANL/Sapsan",
-	"content": "ML-based turbulence modeling for astrophysics"
+	"github/ashleefv/ACEInhibPKPD": {
+	"id": "github/ashleefv/ACEInhibPKPD",
+	"title": "github/ashleefv/ACEInhibPKPD",
+	"url": " https://rseng.github.io/software/repository/github/ashleefv/ACEInhibPKPD",
+	"content": "PKPD model for ACE inhibition; educational drug dosing app for treatment of high blood pressure"
 	},
-	"github/aconley/simple_cosfitter": {
-	"id": "github/aconley/simple_cosfitter",
-	"title": "github/aconley/simple_cosfitter",
-	"url": " https://rseng.github.io/software/repository/github/aconley/simple_cosfitter",
-	"content": "Grid based SN cosmology fitting code"
+	"github/SAMI-Galaxy-Survey/sami": {
+	"id": "github/SAMI-Galaxy-Survey/sami",
+	"title": "github/SAMI-Galaxy-Survey/sami",
+	"url": " https://rseng.github.io/software/repository/github/SAMI-Galaxy-Survey/sami",
+	"content": "Data reduction pipeline for the SAMI instrument"
 	},
-	"github/aconley/mbb_emcee": {
-	"id": "github/aconley/mbb_emcee",
-	"title": "github/aconley/mbb_emcee",
-	"url": " https://rseng.github.io/software/repository/github/aconley/mbb_emcee",
-	"content": "Modified blackbody MCMC code"
+	"github/lmwalkowicz/Cheetah": {
+	"id": "github/lmwalkowicz/Cheetah",
+	"title": "github/lmwalkowicz/Cheetah",
+	"url": " https://rseng.github.io/software/repository/github/lmwalkowicz/Cheetah",
+	"content": "None"
 	},
-	"github/wmalab/EnHiC": {
-	"id": "github/wmalab/EnHiC",
-	"title": "github/wmalab/EnHiC",
-	"url": " https://rseng.github.io/software/repository/github/wmalab/EnHiC",
-	"content": "Enhancing Hi-C matrix resolution"
+	"github/pwry/lextes": {
+	"id": "github/pwry/lextes",
+	"title": "github/pwry/lextes",
+	"url": " https://rseng.github.io/software/repository/github/pwry/lextes",
+	"content": "PDF link scraper/tester for Schroedinger&#39;s Code paper"
 	},
-	"github/NCAR/NCAR-Classic-Libraries-for-Geophysics": {
-	"id": "github/NCAR/NCAR-Classic-Libraries-for-Geophysics",
-	"title": "github/NCAR/NCAR-Classic-Libraries-for-Geophysics",
-	"url": " https://rseng.github.io/software/repository/github/NCAR/NCAR-Classic-Libraries-for-Geophysics",
-	"content": "None"
+	"github/tmux/tmux": {
+	"id": "github/tmux/tmux",
+	"title": "github/tmux/tmux",
+	"url": " https://rseng.github.io/software/repository/github/tmux/tmux",
+	"content": "tmux source code"
 	},
-	"github/brsynth/rp2paths": {
-	"id": "github/brsynth/rp2paths",
-	"title": "github/brsynth/rp2paths",
-	"url": " https://rseng.github.io/software/repository/github/brsynth/rp2paths",
-	"content": "RetroPath2.0 to pathways"
+	"github/gianthk/ciclope": {
+	"id": "github/gianthk/ciclope",
+	"title": "github/gianthk/ciclope",
+	"url": " https://rseng.github.io/software/repository/github/gianthk/ciclope",
+	"content": "Computed Tomography to Finite Elements"
 	},
-	"github/Guo-Jian-Wang/colfi": {
-	"id": "github/Guo-Jian-Wang/colfi",
-	"title": "github/Guo-Jian-Wang/colfi",
-	"url": " https://rseng.github.io/software/repository/github/Guo-Jian-Wang/colfi",
-	"content": "Likelihood-free Inference with neural density estimators"
+	"github/jadexter/grtrans": {
+	"id": "github/jadexter/grtrans",
+	"title": "github/jadexter/grtrans",
+	"url": " https://rseng.github.io/software/repository/github/jadexter/grtrans",
+	"content": "Public Kerr metric polarized ray tracing radiative transfer code"
+	},
+	"github/CRPropa/CRPropa2": {
+	"id": "github/CRPropa/CRPropa2",
+	"title": "github/CRPropa/CRPropa2",
+	"url": " https://rseng.github.io/software/repository/github/CRPropa/CRPropa2",
+	"content": "Previous version of CRPropa"
+	},
+	"github/CRPropa/CRPropa3": {
+	"id": "github/CRPropa/CRPropa3",
+	"title": "github/CRPropa/CRPropa3",
+	"url": " https://rseng.github.io/software/repository/github/CRPropa/CRPropa3",
+	"content": "  CRPropa is a public astrophysical simulation framework for propagating extraterrestrial ultra-high energy particles.   https://crpropa.github.io/CRPropa3/"
+	},
+	"github/jakelever/civicmine": {
+	"id": "github/jakelever/civicmine",
+	"title": "github/jakelever/civicmine",
+	"url": " https://rseng.github.io/software/repository/github/jakelever/civicmine",
+	"content": "Text mining cancer biomarkers for the CIVIC database"
 	},
-	"github/cwentland0/perform": {
-	"id": "github/cwentland0/perform",
-	"title": "github/cwentland0/perform",
-	"url": " https://rseng.github.io/software/repository/github/cwentland0/perform",
-	"content": "One-dimensional unsteady compressible reacting flow simulation framework, designed for simple prototyping and testing of novel reduced-order model methods."
+	"github/jpahlers/LASR": {
+	"id": "github/jpahlers/LASR",
+	"title": "github/jpahlers/LASR",
+	"url": " https://rseng.github.io/software/repository/github/jpahlers/LASR",
+	"content": "Code and dependencies for the Linear Algorithm for Significance Reduction, developed by various members of the University of Idaho&#39;s Department of Physics."
 	},
-	"github/Cascella-Group-UiO/HyMD": {
-	"id": "github/Cascella-Group-UiO/HyMD",
-	"title": "github/Cascella-Group-UiO/HyMD",
-	"url": " https://rseng.github.io/software/repository/github/Cascella-Group-UiO/HyMD",
-	"content": "Massively parallel hybrid particle-field molecular dynamics in Python."
+	"github/online-behaviour/machine-learning": {
+	"id": "github/online-behaviour/machine-learning",
+	"title": "github/online-behaviour/machine-learning",
+	"url": " https://rseng.github.io/software/repository/github/online-behaviour/machine-learning",
+	"content": "Python scripts for tweet retrieval and machine learning in the eScience project Automated Analysis of Online Behaviour on Social Media"
 	},
-	"github/fcastagna/preprofit": {
-	"id": "github/fcastagna/preprofit",
-	"title": "github/fcastagna/preprofit",
-	"url": " https://rseng.github.io/software/repository/github/fcastagna/preprofit",
-	"content": "Pressure Profile Fitter for galaxy clusters in Python"
+	"github/online-behaviour/find-journalists": {
+	"id": "github/online-behaviour/find-journalists",
+	"title": "github/online-behaviour/find-journalists",
+	"url": " https://rseng.github.io/software/repository/github/online-behaviour/find-journalists",
+	"content": "None"
 	},
-	"github/fcastagna/JoXSZ": {
-	"id": "github/fcastagna/JoXSZ",
-	"title": "github/fcastagna/JoXSZ",
-	"url": " https://rseng.github.io/software/repository/github/fcastagna/JoXSZ",
-	"content": "Joint X-ray and SZ data fitting code for galaxy clusters in Python"
+	"github/bsafdi/stellarWakes": {
+	"id": "github/bsafdi/stellarWakes",
+	"title": "github/bsafdi/stellarWakes",
+	"url": " https://rseng.github.io/software/repository/github/bsafdi/stellarWakes",
+	"content": "Python package for dark matter subhalo searches using stellar kinematic data"
 	},
-	"github/DMGW-Goethe/imripy": {
-	"id": "github/DMGW-Goethe/imripy",
-	"title": "github/DMGW-Goethe/imripy",
-	"url": " https://rseng.github.io/software/repository/github/DMGW-Goethe/imripy",
-	"content": "A python code able to simulate Intermediate Mass Ratio Inspirals (IMRI)"
+	"github/wcoulton/CompressedFisher": {
+	"id": "github/wcoulton/CompressedFisher",
+	"title": "github/wcoulton/CompressedFisher",
+	"url": " https://rseng.github.io/software/repository/github/wcoulton/CompressedFisher",
+	"content": "None"
 	},
-	"github/hrwakeford/ExoTiC-ISM": {
-	"id": "github/hrwakeford/ExoTiC-ISM",
-	"title": "github/hrwakeford/ExoTiC-ISM",
-	"url": " https://rseng.github.io/software/repository/github/hrwakeford/ExoTiC-ISM",
-	"content": "This is a repository for the reduction pipeline detailed in Wakeford, et al., 2016, ApJ. The method implements marginalization across a series of models to represent stochastic models for observatory and instrument systematics. This is primarily for HST WFC3, however, may be extened to STIS in the future. "
+	"github/FiorenSt/AutoSourceID-Light": {
+	"id": "github/FiorenSt/AutoSourceID-Light",
+	"title": "github/FiorenSt/AutoSourceID-Light",
+	"url": " https://rseng.github.io/software/repository/github/FiorenSt/AutoSourceID-Light",
+	"content": "None"
 	},
-	"github/etal/cnvkit": {
-	"id": "github/etal/cnvkit",
-	"title": "github/etal/cnvkit",
-	"url": " https://rseng.github.io/software/repository/github/etal/cnvkit",
-	"content": "a command-line toolkit and Python library for detecting copy number variants and alterations genome-wide from high-throughput sequencing."
+	"github/BogdanCiambur/PROFILER": {
+	"id": "github/BogdanCiambur/PROFILER",
+	"title": "github/BogdanCiambur/PROFILER",
+	"url": " https://rseng.github.io/software/repository/github/BogdanCiambur/PROFILER",
+	"content": "This repository contains the code Profiler, a Python program for decomposing galaxy light profiles in 1D"
 	},
-	"github/ClaraLage/Portfolio-Transition": {
-	"id": "github/ClaraLage/Portfolio-Transition",
-	"title": "github/ClaraLage/Portfolio-Transition",
-	"url": " https://rseng.github.io/software/repository/github/ClaraLage/Portfolio-Transition",
-	"content": "https://hal.archives-ouvertes.fr/hal-03423114/"
+	"github/dansarie/sboxgates": {
+	"id": "github/dansarie/sboxgates",
+	"title": "github/dansarie/sboxgates",
+	"url": " https://rseng.github.io/software/repository/github/dansarie/sboxgates",
+	"content": "Program for finding low gate count implementations of S-boxes."
 	},
-	"github/bessagroup/f3dasm": {
-	"id": "github/bessagroup/f3dasm",
-	"title": "github/bessagroup/f3dasm",
-	"url": " https://rseng.github.io/software/repository/github/bessagroup/f3dasm",
-	"content": "Framework for Data-Driven Design &amp; Analysis of Structures &amp; Materials (F3DASM)"
+	"github/nlppln/nlppln": {
+	"id": "github/nlppln/nlppln",
+	"title": "github/nlppln/nlppln",
+	"url": " https://rseng.github.io/software/repository/github/nlppln/nlppln",
+	"content": "NLP pipeline software using common workflow language"
 	},
-	"github/shenlab-sinai/ngsplot": {
-	"id": "github/shenlab-sinai/ngsplot",
-	"title": "github/shenlab-sinai/ngsplot",
-	"url": " https://rseng.github.io/software/repository/github/shenlab-sinai/ngsplot",
-	"content": "Quick mining and visualization of NGS data by integrating genomic databases"
+	"github/alexander-pastukhov/bistablehistory": {
+	"id": "github/alexander-pastukhov/bistablehistory",
+	"title": "github/alexander-pastukhov/bistablehistory",
+	"url": " https://rseng.github.io/software/repository/github/alexander-pastukhov/bistablehistory",
+	"content": "A package to compute a cumulative history for time-series of perceptual dominance in bistable displays."
 	},
-	"github/HaowenZhang/TRINITY": {
-	"id": "github/HaowenZhang/TRINITY",
-	"title": "github/HaowenZhang/TRINITY",
-	"url": " https://rseng.github.io/software/repository/github/HaowenZhang/TRINITY",
-	"content": "An empirical model that statistically connects dark matter halos, galaxies and supermassive black holes from z=0-10."
+	"github/Quantum-Dynamics-Hub/libra-code": {
+	"id": "github/Quantum-Dynamics-Hub/libra-code",
+	"title": "github/Quantum-Dynamics-Hub/libra-code",
+	"url": " https://rseng.github.io/software/repository/github/Quantum-Dynamics-Hub/libra-code",
+	"content": "None"
 	},
-	"github/szhorvat/IGraphM": {
-	"id": "github/szhorvat/IGraphM",
-	"title": "github/szhorvat/IGraphM",
-	"url": " https://rseng.github.io/software/repository/github/szhorvat/IGraphM",
-	"content": "IGraph/M is the igraph interface for Mathematica"
+	"github/pkgw/pwkit": {
+	"id": "github/pkgw/pwkit",
+	"title": "github/pkgw/pwkit",
+	"url": " https://rseng.github.io/software/repository/github/pkgw/pwkit",
+	"content": "Miscellaneous science/astronomy tools."
 	},
-	"github/EigenDev/simbi": {
-	"id": "github/EigenDev/simbi",
-	"title": "github/EigenDev/simbi",
-	"url": " https://rseng.github.io/software/repository/github/EigenDev/simbi",
-	"content": "SIMBI is a 3D Heterogeneous Relativistic Gas Dynamics Code using the Cython framework to blend together C++, CUDA, HIP, and Python."
+	"github/ejikeugba/serp": {
+	"id": "github/ejikeugba/serp",
+	"title": "github/ejikeugba/serp",
+	"url": " https://rseng.github.io/software/repository/github/ejikeugba/serp",
+	"content": "Smooth Effects on Response Penalty for CLM"
 	},
-	"github/herjy/SLIT": {
-	"id": "github/herjy/SLIT",
-	"title": "github/herjy/SLIT",
-	"url": " https://rseng.github.io/software/repository/github/herjy/SLIT",
-	"content": "SLIT is a python code that provides a method for invertion of lensed images in the frame of strong gravitational lensing"
+	"github/ejikeugba/gofcat": {
+	"id": "github/ejikeugba/gofcat",
+	"title": "github/ejikeugba/gofcat",
+	"url": " https://rseng.github.io/software/repository/github/ejikeugba/gofcat",
+	"content": "Goodness-of-fit tests for categorical response models"
 	},
-	"github/tcollett/LensPop": {
-	"id": "github/tcollett/LensPop",
-	"title": "github/tcollett/LensPop",
-	"url": " https://rseng.github.io/software/repository/github/tcollett/LensPop",
-	"content": "None"
+	"github/mjcarley/nbi": {
+	"id": "github/mjcarley/nbi",
+	"title": "github/mjcarley/nbi",
+	"url": " https://rseng.github.io/software/repository/github/mjcarley/nbi",
+	"content": "Nystrom Boundary Integral codes for Laplace and Helmholtz problems"
 	},
-	"github/combine-lab/salmon": {
-	"id": "github/combine-lab/salmon",
-	"title": "github/combine-lab/salmon",
-	"url": " https://rseng.github.io/software/repository/github/combine-lab/salmon",
-	"content": "🐟 🍣 🍱 Highly-accurate &amp; wicked fast transcript-level quantification from RNA-seq reads using selective alignment"
+	"github/rhenkin/visxhclust": {
+	"id": "github/rhenkin/visxhclust",
+	"title": "github/rhenkin/visxhclust",
+	"url": " https://rseng.github.io/software/repository/github/rhenkin/visxhclust",
+	"content": "A Shiny app and functions for visual exploration of hierarchical clustering."
 	},
-	"github/AarhusCosmology/prospect_public": {
-	"id": "github/AarhusCosmology/prospect_public",
-	"title": "github/AarhusCosmology/prospect_public",
-	"url": " https://rseng.github.io/software/repository/github/AarhusCosmology/prospect_public",
-	"content": "None"
+	"github/neslusan/BELTCROSS2": {
+	"id": "github/neslusan/BELTCROSS2",
+	"title": "github/neslusan/BELTCROSS2",
+	"url": " https://rseng.github.io/software/repository/github/neslusan/BELTCROSS2",
+	"content": "A computer program calculating the closest approaches of asteroid to the mean orbits of meteoroid streams, new version upploaded on January 15, 2024."
 	},
-	"github/AarhusCosmology/connect_public": {
-	"id": "github/AarhusCosmology/connect_public",
-	"title": "github/AarhusCosmology/connect_public",
-	"url": " https://rseng.github.io/software/repository/github/AarhusCosmology/connect_public",
-	"content": "Public branch of CONNECT"
+	"github/Shyentist/fish-r-man": {
+	"id": "github/Shyentist/fish-r-man",
+	"title": "github/Shyentist/fish-r-man",
+	"url": " https://rseng.github.io/software/repository/github/Shyentist/fish-r-man",
+	"content": "Open-Source Shiny R Dashboard to easily query, download, analyse and visualise Global Fishing Watch data on fishing effort."
 	},
-	"github/metagenlab/MeSS": {
-	"id": "github/metagenlab/MeSS",
-	"title": "github/metagenlab/MeSS",
-	"url": " https://rseng.github.io/software/repository/github/metagenlab/MeSS",
-	"content": "Snakemake pipeline for simulating shotgun metagenomic samples"
+	"github/pyamg/pyamg": {
+	"id": "github/pyamg/pyamg",
+	"title": "github/pyamg/pyamg",
+	"url": " https://rseng.github.io/software/repository/github/pyamg/pyamg",
+	"content": "Algebraic Multigrid Solvers in Python"
 	},
-	"github/metagenlab/assembly_finder": {
-	"id": "github/metagenlab/assembly_finder",
-	"title": "github/metagenlab/assembly_finder",
-	"url": " https://rseng.github.io/software/repository/github/metagenlab/assembly_finder",
-	"content": "snakemake-powered cli to download genomes using NCBI datasets"
+	"github/esandford/EightBitTransit": {
+	"id": "github/esandford/EightBitTransit",
+	"title": "github/esandford/EightBitTransit",
+	"url": " https://rseng.github.io/software/repository/github/esandford/EightBitTransit",
+	"content": "Calculate light curves from pixel grids, and recover shadow images from light curves."
 	},
-	"github/lu-yizhou/ClusterSeg": {
-	"id": "github/lu-yizhou/ClusterSeg",
-	"title": "github/lu-yizhou/ClusterSeg",
-	"url": " https://rseng.github.io/software/repository/github/lu-yizhou/ClusterSeg",
+	"github/QingyuLiaib/PLA-MoRe": {
+	"id": "github/QingyuLiaib/PLA-MoRe",
+	"title": "github/QingyuLiaib/PLA-MoRe",
+	"url": " https://rseng.github.io/software/repository/github/QingyuLiaib/PLA-MoRe",
 	"content": "None"
 	},
-	"github/lpfworld/DMPNet": {
-	"id": "github/lpfworld/DMPNet",
-	"title": "github/lpfworld/DMPNet",
-	"url": " https://rseng.github.io/software/repository/github/lpfworld/DMPNet",
-	"content": "DMPNet"
+	"github/cholla-hydro/cholla": {
+	"id": "github/cholla-hydro/cholla",
+	"title": "github/cholla-hydro/cholla",
+	"url": " https://rseng.github.io/software/repository/github/cholla-hydro/cholla",
+	"content": "A GPU-based hydro code"
 	},
-	"github/mzy2240/ESA": {
-	"id": "github/mzy2240/ESA",
-	"title": "github/mzy2240/ESA",
-	"url": " https://rseng.github.io/software/repository/github/mzy2240/ESA",
-	"content": "Easy SimAuto (ESA): An easy-to-use Python connector to PowerWorld Simulator Automation Server (SimAuto)"
+	"github/cnellington/Contextualized": {
+	"id": "github/cnellington/Contextualized",
+	"title": "github/cnellington/Contextualized",
+	"url": " https://rseng.github.io/software/repository/github/cnellington/Contextualized",
+	"content": "An SKLearn-style toolbox for estimating and analyzing models, distributions, and functions with context-specific parameters."
 	},
-	"github/ranieremenezes/easyspec": {
-	"id": "github/ranieremenezes/easyspec",
-	"title": "github/ranieremenezes/easyspec",
-	"url": " https://rseng.github.io/software/repository/github/ranieremenezes/easyspec",
-	"content": "The easiest way to do long-slit optical spectroscopy"
+	"github/lysovosyl/NanoDeep": {
+	"id": "github/lysovosyl/NanoDeep",
+	"title": "github/lysovosyl/NanoDeep",
+	"url": " https://rseng.github.io/software/repository/github/lysovosyl/NanoDeep",
+	"content": "None"
 	},
-	"github/ranieremenezes/easyFermi": {
-	"id": "github/ranieremenezes/easyFermi",
-	"title": "github/ranieremenezes/easyFermi",
-	"url": " https://rseng.github.io/software/repository/github/ranieremenezes/easyFermi",
-	"content": "The easiest way to analyze Fermi-LAT data"
+	"github/malonge/RagTag": {
+	"id": "github/malonge/RagTag",
+	"title": "github/malonge/RagTag",
+	"url": " https://rseng.github.io/software/repository/github/malonge/RagTag",
+	"content": "Tools for fast and flexible genome assembly scaffolding and improvement"
 	},
-	"github/alexfields/ORF-RATER": {
-	"id": "github/alexfields/ORF-RATER",
-	"title": "github/alexfields/ORF-RATER",
-	"url": " https://rseng.github.io/software/repository/github/alexfields/ORF-RATER",
-	"content": "Regression-based annotation of protein-coding sequences from ribosome profiling data"
+	"github/christophmschaefer/miluphcuda": {
+	"id": "github/christophmschaefer/miluphcuda",
+	"title": "github/christophmschaefer/miluphcuda",
+	"url": " https://rseng.github.io/software/repository/github/christophmschaefer/miluphcuda",
+	"content": "smooth particle hydrodynamics code"
 	},
-	"github/annajenul/UBayFS": {
-	"id": "github/annajenul/UBayFS",
-	"title": "github/annajenul/UBayFS",
-	"url": " https://rseng.github.io/software/repository/github/annajenul/UBayFS",
-	"content": "UBayFS implements the UBayFS feature selection framework, together with an interactive Shiny dashbord."
+	"github/MicGrasso/bigonlight": {
+	"id": "github/MicGrasso/bigonlight",
+	"title": "github/MicGrasso/bigonlight",
+	"url": " https://rseng.github.io/software/repository/github/MicGrasso/bigonlight",
+	"content": "The BiGONLight is a Mathematica package created by Michele Grasso to study light propagation in the geometric optics regime using the Bi-local Geodesic Operator formalism."
 	},
-	"github/rroyaute/h2_breeders_equation": {
-	"id": "github/rroyaute/h2_breeders_equation",
-	"title": "github/rroyaute/h2_breeders_equation",
-	"url": " https://rseng.github.io/software/repository/github/rroyaute/h2_breeders_equation",
-	"content": "Shiny application for interactive Evolution teaching activity on heritability and making use of the Breeder&#39;s equation"
+	"github/acbecker/hotpants": {
+	"id": "github/acbecker/hotpants",
+	"title": "github/acbecker/hotpants",
+	"url": " https://rseng.github.io/software/repository/github/acbecker/hotpants",
+	"content": "hotpants"
 	},
-	"github/cicirello/rho-mu": {
-	"id": "github/cicirello/rho-mu",
-	"title": "github/cicirello/rho-mu",
-	"url": " https://rseng.github.io/software/repository/github/cicirello/rho-mu",
-	"content": "ρμ - a Java library of Randomization enHancements and Other Math Utilities"
+	"github/fumi-github/omicwas": {
+	"id": "github/fumi-github/omicwas",
+	"title": "github/fumi-github/omicwas",
+	"url": " https://rseng.github.io/software/repository/github/fumi-github/omicwas",
+	"content": "Cell-Type-Specific Disease Association Testing in Bulk Omics Experiments"
 	},
-	"github/cicirello/Chips-n-Salsa": {
-	"id": "github/cicirello/Chips-n-Salsa",
-	"title": "github/cicirello/Chips-n-Salsa",
-	"url": " https://rseng.github.io/software/repository/github/cicirello/Chips-n-Salsa",
-	"content": "Chips-n-Salsa - A Java library of customizable, hybridizable, iterative, parallel, stochastic, and self-adaptive local search algorithms"
+	"github/cylammarco/ASPIRED": {
+	"id": "github/cylammarco/ASPIRED",
+	"title": "github/cylammarco/ASPIRED",
+	"url": " https://rseng.github.io/software/repository/github/cylammarco/ASPIRED",
+	"content": "Automated SpectroPhotometric Image REDuction (ASPIRED)"
 	},
-	"github/JDabringhausen/BiPoS1": {
-	"id": "github/JDabringhausen/BiPoS1",
-	"title": "github/JDabringhausen/BiPoS1",
-	"url": " https://rseng.github.io/software/repository/github/JDabringhausen/BiPoS1",
-	"content": "This is the first version of the Binary Population Synthesizer (BiPoS1)"
+	"github/cylammarco/WDPhotTools": {
+	"id": "github/cylammarco/WDPhotTools",
+	"title": "github/cylammarco/WDPhotTools",
+	"url": " https://rseng.github.io/software/repository/github/cylammarco/WDPhotTools",
+	"content": "The Python White Dwarf Photometric SED Fitter and Luminosity Function Builder"
 	},
-	"github/luxsrc/gray": {
-	"id": "github/luxsrc/gray",
-	"title": "github/luxsrc/gray",
-	"url": " https://rseng.github.io/software/repository/github/luxsrc/gray",
-	"content": "A general relativistic ray tracing code based on lux"
+	"github/JSB-UCLA/scPNMF": {
+	"id": "github/JSB-UCLA/scPNMF",
+	"title": "github/JSB-UCLA/scPNMF",
+	"url": " https://rseng.github.io/software/repository/github/JSB-UCLA/scPNMF",
+	"content": "None"
 	},
-	"github/basp-group/purify": {
-	"id": "github/basp-group/purify",
-	"title": "github/basp-group/purify",
-	"url": " https://rseng.github.io/software/repository/github/basp-group/purify",
-	"content": "Software for radio-interferometric imaging 1.0"
+	"github/YihanWangAstro/SpaceHub": {
+	"id": "github/YihanWangAstro/SpaceHub",
+	"title": "github/YihanWangAstro/SpaceHub",
+	"url": " https://rseng.github.io/software/repository/github/YihanWangAstro/SpaceHub",
+	"content": "SpaceHub"
 	},
-	"github/basp-group/Optical-Interferometry-Trilinear": {
-	"id": "github/basp-group/Optical-Interferometry-Trilinear",
-	"title": "github/basp-group/Optical-Interferometry-Trilinear",
-	"url": " https://rseng.github.io/software/repository/github/basp-group/Optical-Interferometry-Trilinear",
-	"content": "Nonconvex optimisation approach to optical-interferometric imaging"
+	"github/quadram-institute-bioscience/dadaist2": {
+	"id": "github/quadram-institute-bioscience/dadaist2",
+	"title": "github/quadram-institute-bioscience/dadaist2",
+	"url": " https://rseng.github.io/software/repository/github/quadram-institute-bioscience/dadaist2",
+	"content": "🎨 dadaist2 - Highway to R"
 	},
-	"github/basp-group/SARA-dimensionality-reduction": {
-	"id": "github/basp-group/SARA-dimensionality-reduction",
-	"title": "github/basp-group/SARA-dimensionality-reduction",
-	"url": " https://rseng.github.io/software/repository/github/basp-group/SARA-dimensionality-reduction",
-	"content": "SARA-dimensionality-reduction: Fourier Dimensionality Reduction for radio-interferometric imaging with SARA"
+	"github/bwvdnbro/CMacIonize": {
+	"id": "github/bwvdnbro/CMacIonize",
+	"title": "github/bwvdnbro/CMacIonize",
+	"url": " https://rseng.github.io/software/repository/github/bwvdnbro/CMacIonize",
+	"content": "C++ Monte Carlo photoionization and radiation hydrodynamics code."
 	},
-	"github/basp-group/SARA-PPD": {
-	"id": "github/basp-group/SARA-PPD",
-	"title": "github/basp-group/SARA-PPD",
-	"url": " https://rseng.github.io/software/repository/github/basp-group/SARA-PPD",
-	"content": "SARA-PPD: Preconditioned primal-dual algorithm for radio-interferometric imaging"
+	"github/bwvdnbro/HydroCode1D": {
+	"id": "github/bwvdnbro/HydroCode1D",
+	"title": "github/bwvdnbro/HydroCode1D",
+	"url": " https://rseng.github.io/software/repository/github/bwvdnbro/HydroCode1D",
+	"content": "Basic 1D finite volume code that can handle pure 1D problems and problems with 2D and 3D spherical symmetry."
 	},
-	"github/basp-group/sopt": {
-	"id": "github/basp-group/sopt",
-	"title": "github/basp-group/sopt",
-	"url": " https://rseng.github.io/software/repository/github/basp-group/sopt",
-	"content": "SOPT: Sparse OPTimisation."
+	"github/lime-rt/lime": {
+	"id": "github/lime-rt/lime",
+	"title": "github/lime-rt/lime",
+	"url": " https://rseng.github.io/software/repository/github/lime-rt/lime",
+	"content": "Line Modeling Engine"
 	},
-	"github/basp-group/faceted-hypersara": {
-	"id": "github/basp-group/faceted-hypersara",
-	"title": "github/basp-group/faceted-hypersara",
-	"url": " https://rseng.github.io/software/repository/github/basp-group/faceted-hypersara",
-	"content": "Faceted-HyperSARA"
+	"github/nicokurtovic/SIMIO": {
+	"id": "github/nicokurtovic/SIMIO",
+	"title": "github/nicokurtovic/SIMIO",
+	"url": " https://rseng.github.io/software/repository/github/nicokurtovic/SIMIO",
+	"content": "SIMIO: from SIMulatIons to Observations"
 	},
-	"github/basp-group/Puri-Psi": {
-	"id": "github/basp-group/Puri-Psi",
-	"title": "github/basp-group/Puri-Psi",
-	"url": " https://rseng.github.io/software/repository/github/basp-group/Puri-Psi",
-	"content": "Software platform for Scalable radio-interferometric imaging 2.0"
+	"github/RenneLab/hybkit": {
+	"id": "github/RenneLab/hybkit",
+	"title": "github/RenneLab/hybkit",
+	"url": " https://rseng.github.io/software/repository/github/RenneLab/hybkit",
+	"content": "Toolkit for analysis of &#34;.hyb&#34; format nucleotide sequence data from chimeric RNA experiments."
 	},
-	"github/basp-group/BUQO": {
-	"id": "github/basp-group/BUQO",
-	"title": "github/basp-group/BUQO",
-	"url": " https://rseng.github.io/software/repository/github/basp-group/BUQO",
-	"content": "BUQO: Bayesian Uncertainty Quantification by Optimisation"
+	"github/metagenopolis/CroCoDeEL": {
+	"id": "github/metagenopolis/CroCoDeEL",
+	"title": "github/metagenopolis/CroCoDeEL",
+	"url": " https://rseng.github.io/software/repository/github/metagenopolis/CroCoDeEL",
+	"content": "CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data"
 	},
-	"github/elsoroka/Satisfiability.jl": {
-	"id": "github/elsoroka/Satisfiability.jl",
-	"title": "github/elsoroka/Satisfiability.jl",
-	"url": " https://rseng.github.io/software/repository/github/elsoroka/Satisfiability.jl",
-	"content": "Specify satisfiability modulo theories problems in Julia and use the SMT-LIB format to interact with SMT solvers."
+	"github/yiwenstat/MCPCA_PopGen": {
+	"id": "github/yiwenstat/MCPCA_PopGen",
+	"title": "github/yiwenstat/MCPCA_PopGen",
+	"url": " https://rseng.github.io/software/repository/github/yiwenstat/MCPCA_PopGen",
+	"content": "None"
 	},
-	"github/CRG-CNAG/anubis": {
-	"id": "github/CRG-CNAG/anubis",
-	"title": "github/CRG-CNAG/anubis",
-	"url": " https://rseng.github.io/software/repository/github/CRG-CNAG/anubis",
-	"content": "Python package for the analysis of tn-seq data"
+	"github/roban/CosmoloPy": {
+	"id": "github/roban/CosmoloPy",
+	"title": "github/roban/CosmoloPy",
+	"url": " https://rseng.github.io/software/repository/github/roban/CosmoloPy",
+	"content": "a basic numpy/scipy-based cosmology package for python"
 	},
-	"github/esquivas/guacho": {
-	"id": "github/esquivas/guacho",
-	"title": "github/esquivas/guacho",
-	"url": " https://rseng.github.io/software/repository/github/esquivas/guacho",
-	"content": "A 3D uniform mesh parallel HD/MHD code for astrophysics"
+	"github/iopenshell/ezSpectrum": {
+	"id": "github/iopenshell/ezSpectrum",
+	"title": "github/iopenshell/ezSpectrum",
+	"url": " https://rseng.github.io/software/repository/github/iopenshell/ezSpectrum",
+	"content": "None"
 	},
-	"github/afd-illinois/grim": {
-	"id": "github/afd-illinois/grim",
-	"title": "github/afd-illinois/grim",
-	"url": " https://rseng.github.io/software/repository/github/afd-illinois/grim",
-	"content": "General Relativistic Implicit Magnetohydrodynamics"
+	"github/sterinaldi/FIGARO": {
+	"id": "github/sterinaldi/FIGARO",
+	"title": "github/sterinaldi/FIGARO",
+	"url": " https://rseng.github.io/software/repository/github/sterinaldi/FIGARO",
+	"content": "Fast Inference for GW Astronomy, Research and Observations"
 	},
-	"github/YaleTHz/nelly": {
-	"id": "github/YaleTHz/nelly",
-	"title": "github/YaleTHz/nelly",
-	"url": " https://rseng.github.io/software/repository/github/YaleTHz/nelly",
-	"content": "Nelly is a package for extracing refractice indices and conductivities from time-domain terahertz spectroscopy data"
+	"github/carlosandrepaes/GaPP": {
+	"id": "github/carlosandrepaes/GaPP",
+	"title": "github/carlosandrepaes/GaPP",
+	"url": " https://rseng.github.io/software/repository/github/carlosandrepaes/GaPP",
+	"content": "Gaussian Processes GaPP code auxiliary repository  "
 	},
-	"github/dipangwvu/SPEGID": {
-	"id": "github/dipangwvu/SPEGID",
-	"title": "github/dipangwvu/SPEGID",
-	"url": " https://rseng.github.io/software/repository/github/dipangwvu/SPEGID",
-	"content": "Single-pulse Search Approach"
+	"github/tesselle/aion": {
+	"id": "github/tesselle/aion",
+	"title": "github/tesselle/aion",
+	"url": " https://rseng.github.io/software/repository/github/tesselle/aion",
+	"content": ":stopwatch: Archaeological Time Series"
 	},
-	"github/CliMA/EnsembleKalmanProcesses.jl": {
-	"id": "github/CliMA/EnsembleKalmanProcesses.jl",
-	"title": "github/CliMA/EnsembleKalmanProcesses.jl",
-	"url": " https://rseng.github.io/software/repository/github/CliMA/EnsembleKalmanProcesses.jl",
-	"content": "Implements Optimization and approximate uncertainty quantification algorithms, Ensemble Kalman Inversion, and Ensemble Kalman Processes."
+	"github/jeetsukumaran/DendroPy": {
+	"id": "github/jeetsukumaran/DendroPy",
+	"title": "github/jeetsukumaran/DendroPy",
+	"url": " https://rseng.github.io/software/repository/github/jeetsukumaran/DendroPy",
+	"content": "A Python library for phylogenetic scripting, simulation, data processing and manipulation."
 	},
-	"github/CliMA/CalibrateEmulateSample.jl": {
-	"id": "github/CliMA/CalibrateEmulateSample.jl",
-	"title": "github/CliMA/CalibrateEmulateSample.jl",
-	"url": " https://rseng.github.io/software/repository/github/CliMA/CalibrateEmulateSample.jl",
-	"content": "Stochastic Optimization, Learning, Uncertainty and Sampling"
+	"github/CTU-Bern/presize": {
+	"id": "github/CTU-Bern/presize",
+	"title": "github/CTU-Bern/presize",
+	"url": " https://rseng.github.io/software/repository/github/CTU-Bern/presize",
+	"content": "Precision Based Sample Size Calculation"
 	},
-	"github/jboynyc/textnets": {
-	"id": "github/jboynyc/textnets",
-	"title": "github/jboynyc/textnets",
-	"url": " https://rseng.github.io/software/repository/github/jboynyc/textnets",
-	"content": "Text analysis with networks."
+	"github/CisnerosResearch/LICHEM": {
+	"id": "github/CisnerosResearch/LICHEM",
+	"title": "github/CisnerosResearch/LICHEM",
+	"url": " https://rseng.github.io/software/repository/github/CisnerosResearch/LICHEM",
+	"content": "This package is an open-source (GPLv3) interface between QM and MM software so that QM/MM calculations can be performed with polarizable and frozen electron density force fields. Functionality is also present for standard point-charge based force fields, pure MM, and pure QM calculations."
 	},
-	"github/h3abionet/genesis2": {
-	"id": "github/h3abionet/genesis2",
-	"title": "github/h3abionet/genesis2",
-	"url": " https://rseng.github.io/software/repository/github/h3abionet/genesis2",
-	"content": "Implementation of the Genesis 2 tool "
+	"github/lomereiter/sambamba": {
+	"id": "github/lomereiter/sambamba",
+	"title": "github/lomereiter/sambamba",
+	"url": " https://rseng.github.io/software/repository/github/lomereiter/sambamba",
+	"content": "Tools for working with SAM/BAM data"
 	},
-	"github/bioinfo-center-pasteur-fr/toppred": {
-	"id": "github/bioinfo-center-pasteur-fr/toppred",
-	"title": "github/bioinfo-center-pasteur-fr/toppred",
-	"url": " https://rseng.github.io/software/repository/github/bioinfo-center-pasteur-fr/toppred",
-	"content": "toppred :: Transmembrane topology prediction based on von Heijne, G. (1992) Membrane Protein Structure Prediction: Hydrophobicity Analysis and the &#39;Positive Inside&#39; (PMID: 1593632)"
+	"github/JLiangLab/TransVW": {
+	"id": "github/JLiangLab/TransVW",
+	"title": "github/JLiangLab/TransVW",
+	"url": " https://rseng.github.io/software/repository/github/JLiangLab/TransVW",
+	"content": "Official Keras &amp; PyTorch Implementation and Pre-trained Models for TransVW"
 	},
-	"github/SpectraCollab/ORMIR_XCT": {
-	"id": "github/SpectraCollab/ORMIR_XCT",
-	"title": "github/SpectraCollab/ORMIR_XCT",
-	"url": " https://rseng.github.io/software/repository/github/SpectraCollab/ORMIR_XCT",
-	"content": "Code developed at the 2022 ORMIR workshop in Maastricht, Netherlands"
+	"github/xzackli/WignerFamilies.jl": {
+	"id": "github/xzackli/WignerFamilies.jl",
+	"title": "github/xzackli/WignerFamilies.jl",
+	"url": " https://rseng.github.io/software/repository/github/xzackli/WignerFamilies.jl",
+	"content": "compute families of wigner symbols with recurrence relations"
 	},
-	"github/ValeevGroup/mpqc": {
-	"id": "github/ValeevGroup/mpqc",
-	"title": "github/ValeevGroup/mpqc",
-	"url": " https://rseng.github.io/software/repository/github/ValeevGroup/mpqc",
-	"content": "The Massively Parallel Quantum Chemistry program, MPQC, computes properties of atoms and molecules from first principles using the time independent Schrödinger equation."
+	"github/ofionnad/radiowinds": {
+	"id": "github/ofionnad/radiowinds",
+	"title": "github/ofionnad/radiowinds",
+	"url": " https://rseng.github.io/software/repository/github/ofionnad/radiowinds",
+	"content": "Calculate the thermal bremsstrahlung emission from stellar winds"
 	},
-	"github/SirSharpest/NarrowEscapeSimulator": {
-	"id": "github/SirSharpest/NarrowEscapeSimulator",
-	"title": "github/SirSharpest/NarrowEscapeSimulator",
-	"url": " https://rseng.github.io/software/repository/github/SirSharpest/NarrowEscapeSimulator",
-	"content": "Developed during my PhD at the John Innes Centre (Norwich Research Park, Doctoral Training Programme). "
+	"github/sjbeckett/localcovid19now": {
+	"id": "github/sjbeckett/localcovid19now",
+	"title": "github/sjbeckett/localcovid19now",
+	"url": " https://rseng.github.io/software/repository/github/sjbeckett/localcovid19now",
+	"content": "processing and mapping COVID-19 case data at subnational scales"
 	},
-	"github/cytham/nanovar": {
-	"id": "github/cytham/nanovar",
-	"title": "github/cytham/nanovar",
-	"url": " https://rseng.github.io/software/repository/github/cytham/nanovar",
-	"content": "Structural variant caller for low-depth long-read sequencing data"
+	"github/debian-tex/biber": {
+	"id": "github/debian-tex/biber",
+	"title": "github/debian-tex/biber",
+	"url": " https://rseng.github.io/software/repository/github/debian-tex/biber",
+	"content": "Much-augmented BibTeX replacement for BibLaTeX users"
 	},
-	"github/agordon/fastx_toolkit": {
-	"id": "github/agordon/fastx_toolkit",
-	"title": "github/agordon/fastx_toolkit",
-	"url": " https://rseng.github.io/software/repository/github/agordon/fastx_toolkit",
-	"content": "FASTA/FASTQ pre-processing programs"
+	"github/debian-tex/texlive-nonbin": {
+	"id": "github/debian-tex/texlive-nonbin",
+	"title": "github/debian-tex/texlive-nonbin",
+	"url": " https://rseng.github.io/software/repository/github/debian-tex/texlive-nonbin",
+	"content": "debian non-bin texlive pkgs"
 	},
-	"github/bxia888/CEFCIG": {
-	"id": "github/bxia888/CEFCIG",
-	"title": "github/bxia888/CEFCIG",
-	"url": " https://rseng.github.io/software/repository/github/bxia888/CEFCIG",
-	"content": "CEFCIG (Computational Epigenetic Framework for Cell Identity Gene Discovery)"
+	"github/jakeret/abcpmc": {
+	"id": "github/jakeret/abcpmc",
+	"title": "github/jakeret/abcpmc",
+	"url": " https://rseng.github.io/software/repository/github/jakeret/abcpmc",
+	"content": "Approximate Bayesian Computation Population Monte Carlo"
 	},
-	"github/Basvanstein/GSAreport": {
-	"id": "github/Basvanstein/GSAreport",
-	"title": "github/Basvanstein/GSAreport",
-	"url": " https://rseng.github.io/software/repository/github/Basvanstein/GSAreport",
-	"content": "Global Sensitivity reporting for Explainable AI"
+	"github/jakeret/tf_unet": {
+	"id": "github/jakeret/tf_unet",
+	"title": "github/jakeret/tf_unet",
+	"url": " https://rseng.github.io/software/repository/github/jakeret/tf_unet",
+	"content": "Generic U-Net Tensorflow implementation for image segmentation"
 	},
-	"github/jeffcsauer/arcos_arcospy_information": {
-	"id": "github/jeffcsauer/arcos_arcospy_information",
-	"title": "github/jeffcsauer/arcos_arcospy_information",
-	"url": " https://rseng.github.io/software/repository/github/jeffcsauer/arcos_arcospy_information",
-	"content": "This is an informational landing page for the R arcos and Python arcospy software"
+	"github/Martinsos/edlib": {
+	"id": "github/Martinsos/edlib",
+	"title": "github/Martinsos/edlib",
+	"url": " https://rseng.github.io/software/repository/github/Martinsos/edlib",
+	"content": "Lightweight, super fast C/C++ (&amp; Python) library for sequence alignment using edit (Levenshtein) distance."
 	},
-	"github/jstjohn/SeqPrep": {
-	"id": "github/jstjohn/SeqPrep",
-	"title": "github/jstjohn/SeqPrep",
-	"url": " https://rseng.github.io/software/repository/github/jstjohn/SeqPrep",
-	"content": "Tool for stripping adaptors and/or merging paired reads with overlap into single reads."
+	"github/glasgowlab/MAGPIE": {
+	"id": "github/glasgowlab/MAGPIE",
+	"title": "github/glasgowlab/MAGPIE",
+	"url": " https://rseng.github.io/software/repository/github/glasgowlab/MAGPIE",
+	"content": "MAGPIE"
 	},
-	"github/dengzhuo-AI/Real-Fundus": {
-	"id": "github/dengzhuo-AI/Real-Fundus",
-	"title": "github/dengzhuo-AI/Real-Fundus",
-	"url": " https://rseng.github.io/software/repository/github/dengzhuo-AI/Real-Fundus",
+	"github/kuanrongchan/COVID19-severity": {
+	"id": "github/kuanrongchan/COVID19-severity",
+	"title": "github/kuanrongchan/COVID19-severity",
+	"url": " https://rseng.github.io/software/repository/github/kuanrongchan/COVID19-severity",
 	"content": "None"
 	},
-	"github/APGG-Lab/APGG": {
-	"id": "github/APGG-Lab/APGG",
-	"title": "github/APGG-Lab/APGG",
-	"url": " https://rseng.github.io/software/repository/github/APGG-Lab/APGG",
-	"content": "A Modular Toolkit for Public Goods Game Computation"
-	},
-	"github/Music-and-Culture-Technology-Lab/omnizart": {
-	"id": "github/Music-and-Culture-Technology-Lab/omnizart",
-	"title": "github/Music-and-Culture-Technology-Lab/omnizart",
-	"url": " https://rseng.github.io/software/repository/github/Music-and-Culture-Technology-Lab/omnizart",
-	"content": "Omniscient Mozart, being able to transcribe everything in the music, including vocal, drum, chord, beat, instruments, and more."
+	"github/aztekas-code/aztekas-main": {
+	"id": "github/aztekas-code/aztekas-main",
+	"title": "github/aztekas-code/aztekas-main",
+	"url": " https://rseng.github.io/software/repository/github/aztekas-code/aztekas-main",
+	"content": "GRHD numerical code "
 	},
-	"github/asancpt/caffsim": {
-	"id": "github/asancpt/caffsim",
-	"title": "github/asancpt/caffsim",
-	"url": " https://rseng.github.io/software/repository/github/asancpt/caffsim",
-	"content": "R package for simulation of caffeine concentration &lt;doi:10.12793/tcp.2017.25.3.141&gt;. https://asancpt.github.io/caffsim"
+	"github/sybila/biodivine-aeon-py": {
+	"id": "github/sybila/biodivine-aeon-py",
+	"title": "github/sybila/biodivine-aeon-py",
+	"url": " https://rseng.github.io/software/repository/github/sybila/biodivine-aeon-py",
+	"content": "None"
 	},
-	"github/harvard-nrg/dwiqc": {
-	"id": "github/harvard-nrg/dwiqc",
-	"title": "github/harvard-nrg/dwiqc",
-	"url": " https://rseng.github.io/software/repository/github/harvard-nrg/dwiqc",
-	"content": "DWI QC Pipeline"
+	"github/MD-Studio/MDStudio": {
+	"id": "github/MD-Studio/MDStudio",
+	"title": "github/MD-Studio/MDStudio",
+	"url": " https://rseng.github.io/software/repository/github/MD-Studio/MDStudio",
+	"content": "A general framework for microservice based distributed applications"
 	},
-	"github/sieunhanbom04/support-exploration-matrix-factorization": {
-	"id": "github/sieunhanbom04/support-exploration-matrix-factorization",
-	"title": "github/sieunhanbom04/support-exploration-matrix-factorization",
-	"url": " https://rseng.github.io/software/repository/github/sieunhanbom04/support-exploration-matrix-factorization",
-	"content": "Code for the paper &#34;Structured support exploration for multi-layer sparse matrix factorization&#34; - ICASSP 2020"
+	"github/MD-Studio/cerulean": {
+	"id": "github/MD-Studio/cerulean",
+	"title": "github/MD-Studio/cerulean",
+	"url": " https://rseng.github.io/software/repository/github/MD-Studio/cerulean",
+	"content": "A Python 3 library for talking to HPC clusters and supercomputers"
 	},
-	"github/agreenbaum/gsgs": {
-	"id": "github/agreenbaum/gsgs",
-	"title": "github/agreenbaum/gsgs",
-	"url": " https://rseng.github.io/software/repository/github/agreenbaum/gsgs",
-	"content": "gsgs does phase retrieval on images given an estimate of the pupil phase, like one from a non-redundant mask "
+	"github/MD-Studio/cerise": {
+	"id": "github/MD-Studio/cerise",
+	"title": "github/MD-Studio/cerise",
+	"url": " https://rseng.github.io/software/repository/github/MD-Studio/cerise",
+	"content": "A REST service for running CWL workflows on remote clusters"
 	},
-	"github/agreenbaum/ImPlaneIA": {
-	"id": "github/agreenbaum/ImPlaneIA",
-	"title": "github/agreenbaum/ImPlaneIA",
-	"url": " https://rseng.github.io/software/repository/github/agreenbaum/ImPlaneIA",
-	"content": "Tools for fitting (image plane fringes), calibrating, and analyzing NRM data across multiple instruments and modes"
+	"github/HLasse/TextDescriptives": {
+	"id": "github/HLasse/TextDescriptives",
+	"title": "github/HLasse/TextDescriptives",
+	"url": " https://rseng.github.io/software/repository/github/HLasse/TextDescriptives",
+	"content": "A Python library for calculating a large variety of metrics from text"
 	},
-	"github/lengoctram/DustPOL-py": {
-	"id": "github/lengoctram/DustPOL-py",
-	"title": "github/lengoctram/DustPOL-py",
-	"url": " https://rseng.github.io/software/repository/github/lengoctram/DustPOL-py",
-	"content": "numerical modelling (source code)"
+	"github/pontoppi/radlite": {
+	"id": "github/pontoppi/radlite",
+	"title": "github/pontoppi/radlite",
+	"url": " https://rseng.github.io/software/repository/github/pontoppi/radlite",
+	"content": "RADLite is the fast 2D/3D raytracer for infrared lines"
 	},
-	"github/VirtualPlantLab/PlantSimEngine.jl": {
-	"id": "github/VirtualPlantLab/PlantSimEngine.jl",
-	"title": "github/VirtualPlantLab/PlantSimEngine.jl",
-	"url": " https://rseng.github.io/software/repository/github/VirtualPlantLab/PlantSimEngine.jl",
-	"content": "A simulation engine for models related to plants"
+	"github/Circuitscape/Omniscape.jl": {
+	"id": "github/Circuitscape/Omniscape.jl",
+	"title": "github/Circuitscape/Omniscape.jl",
+	"url": " https://rseng.github.io/software/repository/github/Circuitscape/Omniscape.jl",
+	"content": "Functions to compute omnidirectional landscape connectivity using circuit theory and the Omniscape algorithm."
 	},
-	"github/IPIS-XieLei/CNTSeg": {
-	"id": "github/IPIS-XieLei/CNTSeg",
-	"title": "github/IPIS-XieLei/CNTSeg",
-	"url": " https://rseng.github.io/software/repository/github/IPIS-XieLei/CNTSeg",
-	"content": "CNTSeg: A multimodal deep-learning-based network for cranial nerves tract segmentation"
+	"github/halomod/hmf": {
+	"id": "github/halomod/hmf",
+	"title": "github/halomod/hmf",
+	"url": " https://rseng.github.io/software/repository/github/halomod/hmf",
+	"content": "Python halo mass function calculator"
 	},
-	"github/OPUS-MaLab/opus_fold3": {
-	"id": "github/OPUS-MaLab/opus_fold3",
-	"title": "github/OPUS-MaLab/opus_fold3",
-	"url": " https://rseng.github.io/software/repository/github/OPUS-MaLab/opus_fold3",
-	"content": "None"
+	"github/halomod/halomod": {
+	"id": "github/halomod/halomod",
+	"title": "github/halomod/halomod",
+	"url": " https://rseng.github.io/software/repository/github/halomod/halomod",
+	"content": "Python package for dealing with the Halo Model"
 	},
-	"github/pytorch/vision": {
-	"id": "github/pytorch/vision",
-	"title": "github/pytorch/vision",
-	"url": " https://rseng.github.io/software/repository/github/pytorch/vision",
-	"content": "Datasets, Transforms and Models specific to Computer Vision"
+	"github/danxhuber/evolstate": {
+	"id": "github/danxhuber/evolstate",
+	"title": "github/danxhuber/evolstate",
+	"url": " https://rseng.github.io/software/repository/github/danxhuber/evolstate",
+	"content": "Assign simple evolutionary states to stars"
 	},
-	"github/renecotyfanboy/jaxspec": {
-	"id": "github/renecotyfanboy/jaxspec",
-	"title": "github/renecotyfanboy/jaxspec",
-	"url": " https://rseng.github.io/software/repository/github/renecotyfanboy/jaxspec",
-	"content": "jaxspec is an X-ray spectra Bayesian analysis package, relying on JAX to enable just in time compilation"
+	"github/danxhuber/galclassify": {
+	"id": "github/danxhuber/galclassify",
+	"title": "github/danxhuber/galclassify",
+	"url": " https://rseng.github.io/software/repository/github/danxhuber/galclassify",
+	"content": "Perform stellar classifications using a galactic population synthesis model"
 	},
-	"github/bodenlab/GRASP": {
-	"id": "github/bodenlab/GRASP",
-	"title": "github/bodenlab/GRASP",
-	"url": " https://rseng.github.io/software/repository/github/bodenlab/GRASP",
-	"content": "Graphical Representation of Ancestral Sequence Predictions"
+	"github/pipliggins/EVolve": {
+	"id": "github/pipliggins/EVolve",
+	"title": "github/pipliggins/EVolve",
+	"url": " https://rseng.github.io/software/repository/github/pipliggins/EVolve",
+	"content": "An atmospheric growth and evolution model based on the EVo degassing model and FastChem 2.0"
 	},
-	"github/RussellJurek/busy-function-fitting": {
-	"id": "github/RussellJurek/busy-function-fitting",
-	"title": "github/RussellJurek/busy-function-fitting",
-	"url": " https://rseng.github.io/software/repository/github/RussellJurek/busy-function-fitting",
-	"content": "A C/C++ library and Python module that allows users to fit the Busy Function (Westmeier, Jurek, Obreschkow, Koribalski &amp; Staveley-Smith 2013) to data. Previously available at code.google.com/p/busy-function-fitting"
+	"github/vedantchandra/wdtools": {
+	"id": "github/vedantchandra/wdtools",
+	"title": "github/vedantchandra/wdtools",
+	"url": " https://rseng.github.io/software/repository/github/vedantchandra/wdtools",
+	"content": "computational tools for the spectroscopic analysis of white dwarfs"
 	},
-	"github/murphycj/AGFusion": {
-	"id": "github/murphycj/AGFusion",
-	"title": "github/murphycj/AGFusion",
-	"url": " https://rseng.github.io/software/repository/github/murphycj/AGFusion",
-	"content": "Python package to annotate and visualize gene fusions."
+	"github/fogellab/multiWGCNA": {
+	"id": "github/fogellab/multiWGCNA",
+	"title": "github/fogellab/multiWGCNA",
+	"url": " https://rseng.github.io/software/repository/github/fogellab/multiWGCNA",
+	"content": "an R package for deep mining gene co-expression networks in multi-trait expression data"
 	},
-	"github/pyvisa/pyvisa": {
-	"id": "github/pyvisa/pyvisa",
-	"title": "github/pyvisa/pyvisa",
-	"url": " https://rseng.github.io/software/repository/github/pyvisa/pyvisa",
-	"content": "A Python package with bindings to the &#34;Virtual Instrument Software Architecture&#34; VISA library, in order to control measurement devices and test equipment via GPIB, RS232, or USB."
+	"github/ndaniyar/aphot": {
+	"id": "github/ndaniyar/aphot",
+	"title": "github/ndaniyar/aphot",
+	"url": " https://rseng.github.io/software/repository/github/ndaniyar/aphot",
+	"content": "Photon Asymmetry"
 	},
-	"github/kbarbary/nestle": {
-	"id": "github/kbarbary/nestle",
-	"title": "github/kbarbary/nestle",
-	"url": " https://rseng.github.io/software/repository/github/kbarbary/nestle",
-	"content": "Pure Python, MIT-licensed implementation of nested sampling algorithms for evaluating Bayesian evidence."
+	"github/multiply-org/sar-pre-processing": {
+	"id": "github/multiply-org/sar-pre-processing",
+	"title": "github/multiply-org/sar-pre-processing",
+	"url": " https://rseng.github.io/software/repository/github/multiply-org/sar-pre-processing",
+	"content": "This is the MULTIPLY repository containing the functionality for SAR pre processing."
 	},
-	"github/kbarbary/sep": {
-	"id": "github/kbarbary/sep",
-	"title": "github/kbarbary/sep",
-	"url": " https://rseng.github.io/software/repository/github/kbarbary/sep",
-	"content": "Python and C library for source extraction and photometry"
+	"github/hotokezaka/HeatingRate": {
+	"id": "github/hotokezaka/HeatingRate",
+	"title": "github/hotokezaka/HeatingRate",
+	"url": " https://rseng.github.io/software/repository/github/hotokezaka/HeatingRate",
+	"content": "None"
 	},
-	"github/kbarbary/extinction": {
-	"id": "github/kbarbary/extinction",
-	"title": "github/kbarbary/extinction",
-	"url": " https://rseng.github.io/software/repository/github/kbarbary/extinction",
-	"content": "Fast interstellar dust extinction laws in Python"
+	"github/PyPO-dev/PyPO": {
+	"id": "github/PyPO-dev/PyPO",
+	"title": "github/PyPO-dev/PyPO",
+	"url": " https://rseng.github.io/software/repository/github/PyPO-dev/PyPO",
+	"content": "📡 Open-source physical optics simulation package."
 	},
-	"github/phac-nml/mob-suite": {
-	"id": "github/phac-nml/mob-suite",
-	"title": "github/phac-nml/mob-suite",
-	"url": " https://rseng.github.io/software/repository/github/phac-nml/mob-suite",
-	"content": "MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies"
+	"github/amkozlov/raxml-ng": {
+	"id": "github/amkozlov/raxml-ng",
+	"title": "github/amkozlov/raxml-ng",
+	"url": " https://rseng.github.io/software/repository/github/amkozlov/raxml-ng",
+	"content": "RAxML Next Generation: faster, easier-to-use and more flexible"
 	},
-	"github/phac-nml/biohansel": {
-	"id": "github/phac-nml/biohansel",
-	"title": "github/phac-nml/biohansel",
-	"url": " https://rseng.github.io/software/repository/github/phac-nml/biohansel",
-	"content": "subtype microbial whole-genome sequencing (WGS) data using SNV targeting k-mer subtyping schemes."
+	"github/Bahler-Lab/pyphe": {
+	"id": "github/Bahler-Lab/pyphe",
+	"title": "github/Bahler-Lab/pyphe",
+	"url": " https://rseng.github.io/software/repository/github/Bahler-Lab/pyphe",
+	"content": "Python toolbox for phenotype analysis of arrayed microbial colonies"
 	},
-	"github/phac-nml/staramr": {
-	"id": "github/phac-nml/staramr",
-	"title": "github/phac-nml/staramr",
-	"url": " https://rseng.github.io/software/repository/github/phac-nml/staramr",
-	"content": "Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases."
+	"github/SchlossLab/mikropml": {
+	"id": "github/SchlossLab/mikropml",
+	"title": "github/SchlossLab/mikropml",
+	"url": " https://rseng.github.io/software/repository/github/SchlossLab/mikropml",
+	"content": "User-Friendly R Package for Supervised Machine Learning Pipelines"
 	},
-	"github/mgcooper/baseflow": {
-	"id": "github/mgcooper/baseflow",
-	"title": "github/mgcooper/baseflow",
-	"url": " https://rseng.github.io/software/repository/github/mgcooper/baseflow",
-	"content": "baseflow recession analysis toolbox"
+	"github/EnergyModelsX/EnergyModelsBase.jl": {
+	"id": "github/EnergyModelsX/EnergyModelsBase.jl",
+	"title": "github/EnergyModelsX/EnergyModelsBase.jl",
+	"url": " https://rseng.github.io/software/repository/github/EnergyModelsX/EnergyModelsBase.jl",
+	"content": "None"
 	},
-	"github/matplotlib/matplotlib": {
-	"id": "github/matplotlib/matplotlib",
-	"title": "github/matplotlib/matplotlib",
-	"url": " https://rseng.github.io/software/repository/github/matplotlib/matplotlib",
-	"content": "matplotlib: plotting with Python"
+	"github/lbcb-sci/racon": {
+	"id": "github/lbcb-sci/racon",
+	"title": "github/lbcb-sci/racon",
+	"url": " https://rseng.github.io/software/repository/github/lbcb-sci/racon",
+	"content": "Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads"
 	},
-	"github/miche-levi/pncbc-eftofpng": {
-	"id": "github/miche-levi/pncbc-eftofpng",
-	"title": "github/miche-levi/pncbc-eftofpng",
-	"url": " https://rseng.github.io/software/repository/github/miche-levi/pncbc-eftofpng",
-	"content": "None"
+	"github/lbcb-sci/raven": {
+	"id": "github/lbcb-sci/raven",
+	"title": "github/lbcb-sci/raven",
+	"url": " https://rseng.github.io/software/repository/github/lbcb-sci/raven",
+	"content": "De novo genome assembler for long uncorrected reads"
 	},
-	"github/ACEnglish/truvari": {
-	"id": "github/ACEnglish/truvari",
-	"title": "github/ACEnglish/truvari",
-	"url": " https://rseng.github.io/software/repository/github/ACEnglish/truvari",
-	"content": "Structural variant toolkit for VCFs"
+	"github/lbcb-sci/graphmap2": {
+	"id": "github/lbcb-sci/graphmap2",
+	"title": "github/lbcb-sci/graphmap2",
+	"url": " https://rseng.github.io/software/repository/github/lbcb-sci/graphmap2",
+	"content": "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html https://www.biorxiv.org/content/10.1101/720458v1"
 	},
-	"github/ydLiu-HIT/deSALT": {
-	"id": "github/ydLiu-HIT/deSALT",
-	"title": "github/ydLiu-HIT/deSALT",
-	"url": " https://rseng.github.io/software/repository/github/ydLiu-HIT/deSALT",
-	"content": "deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads"
+	"github/EGaraldi/corecon": {
+	"id": "github/EGaraldi/corecon",
+	"title": "github/EGaraldi/corecon",
+	"url": " https://rseng.github.io/software/repository/github/EGaraldi/corecon",
+	"content": "User-friendly collection of Reionization-related constraints"
 	},
-	"github/maize-genetics/rTASSEL": {
-	"id": "github/maize-genetics/rTASSEL",
-	"title": "github/maize-genetics/rTASSEL",
-	"url": " https://rseng.github.io/software/repository/github/maize-genetics/rTASSEL",
-	"content": "R front-end for TASSEL"
+	"github/EGaraldi/ZInCo": {
+	"id": "github/EGaraldi/ZInCo",
+	"title": "github/EGaraldi/ZInCo",
+	"url": " https://rseng.github.io/software/repository/github/EGaraldi/ZInCo",
+	"content": "The ZInCo code for manipulating GADGET initial conditions"
 	},
-	"github/HCGB-IGTP/XICRA": {
-	"id": "github/HCGB-IGTP/XICRA",
-	"title": "github/HCGB-IGTP/XICRA",
-	"url": " https://rseng.github.io/software/repository/github/HCGB-IGTP/XICRA",
-	"content": "Small RNAseq pipeline for paired-end reads"
+	"github/panoptes/POCS": {
+	"id": "github/panoptes/POCS",
+	"title": "github/panoptes/POCS",
+	"url": " https://rseng.github.io/software/repository/github/panoptes/POCS",
+	"content": "An Observatory Control System for the PANOPTES citizen-science project designed to help find transiting exoplanets! :telescope: :stars:"
 	},
-	"github/HCGB-IGTP/spaTyper": {
-	"id": "github/HCGB-IGTP/spaTyper",
-	"title": "github/HCGB-IGTP/spaTyper",
-	"url": " https://rseng.github.io/software/repository/github/HCGB-IGTP/spaTyper",
-	"content": "Computational method for finding spa types."
+	"github/CLARIAH/grlc": {
+	"id": "github/CLARIAH/grlc",
+	"title": "github/CLARIAH/grlc",
+	"url": " https://rseng.github.io/software/repository/github/CLARIAH/grlc",
+	"content": "grlc builds Web APIs using shared SPARQL queries"
 	},
-	"github/sidiwang/snSMART": {
-	"id": "github/sidiwang/snSMART",
-	"title": "github/sidiwang/snSMART",
-	"url": " https://rseng.github.io/software/repository/github/sidiwang/snSMART",
-	"content": "small n sequential multiple assignment randomized trial (snSMART)"
+	"github/wdpozzo/raynest": {
+	"id": "github/wdpozzo/raynest",
+	"title": "github/wdpozzo/raynest",
+	"url": " https://rseng.github.io/software/repository/github/wdpozzo/raynest",
+	"content": "Nested sampling algorithm parallelised through ray"
 	},
-	"github/yiwenstat/MCPCA_PopGen": {
-	"id": "github/yiwenstat/MCPCA_PopGen",
-	"title": "github/yiwenstat/MCPCA_PopGen",
-	"url": " https://rseng.github.io/software/repository/github/yiwenstat/MCPCA_PopGen",
+	"github/afukushima/DiffCorr": {
+	"id": "github/afukushima/DiffCorr",
+	"title": "github/afukushima/DiffCorr",
+	"url": " https://rseng.github.io/software/repository/github/afukushima/DiffCorr",
 	"content": "None"
 	},
-	"github/tcherninceline/PPInteractions": {
-	"id": "github/tcherninceline/PPInteractions",
-	"title": "github/tcherninceline/PPInteractions",
-	"url": " https://rseng.github.io/software/repository/github/tcherninceline/PPInteractions",
-	"content": "None"
+	"github/numba/numba": {
+	"id": "github/numba/numba",
+	"title": "github/numba/numba",
+	"url": " https://rseng.github.io/software/repository/github/numba/numba",
+	"content": "NumPy aware dynamic Python compiler using LLVM"
 	},
-	"github/nanograv/enterprise": {
-	"id": "github/nanograv/enterprise",
-	"title": "github/nanograv/enterprise",
-	"url": " https://rseng.github.io/software/repository/github/nanograv/enterprise",
-	"content": "ENTERPRISE (Enhanced Numerical Toolbox Enabling a Robust PulsaR Inference SuitE) is a pulsar timing analysis code, aimed at noise analysis, gravitational-wave searches, and timing model analysis."
+	"github/ChengF-Lab/AOPEDF": {
+	"id": "github/ChengF-Lab/AOPEDF",
+	"title": "github/ChengF-Lab/AOPEDF",
+	"url": " https://rseng.github.io/software/repository/github/ChengF-Lab/AOPEDF",
+	"content": "None"
 	},
-	"github/nanograv/PINT": {
-	"id": "github/nanograv/PINT",
-	"title": "github/nanograv/PINT",
-	"url": " https://rseng.github.io/software/repository/github/nanograv/PINT",
-	"content": "PINT is not TEMPO3 -- Software for high-precision pulsar timing"
+	"github/indrops/indrops": {
+	"id": "github/indrops/indrops",
+	"title": "github/indrops/indrops",
+	"url": " https://rseng.github.io/software/repository/github/indrops/indrops",
+	"content": "Pipeline for processing inDrops sequencing data"
 	},
-	"github/lwang-astro/PeTar": {
-	"id": "github/lwang-astro/PeTar",
-	"title": "github/lwang-astro/PeTar",
-	"url": " https://rseng.github.io/software/repository/github/lwang-astro/PeTar",
-	"content": "PeTar is a high-performance N-body code for modelling the evolution of star clusters and tidal streams, including the effect of galactic potential, dynamics of binary and hierarchical system, single and binary stellar evolution."
+	"github/ethicsai/ethical-smart-grid": {
+	"id": "github/ethicsai/ethical-smart-grid",
+	"title": "github/ethicsai/ethical-smart-grid",
+	"url": " https://rseng.github.io/software/repository/github/ethicsai/ethical-smart-grid",
+	"content": "Reinforcement learning environment for learning ethical behaviours in a SmartGrid use-case."
 	},
-	"github/lwang-astro/SDAR": {
-	"id": "github/lwang-astro/SDAR",
-	"title": "github/lwang-astro/SDAR",
-	"url": " https://rseng.github.io/software/repository/github/lwang-astro/SDAR",
-	"content": "Slow-down Algorithmic regularization (SDAR) code for solving few-body problems"
+	"github/gtonkinhill/fastbaps": {
+	"id": "github/gtonkinhill/fastbaps",
+	"title": "github/gtonkinhill/fastbaps",
+	"url": " https://rseng.github.io/software/repository/github/gtonkinhill/fastbaps",
+	"content": "A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data"
 	},
-	"github/hyosubkim/bayes-toolbox": {
-	"id": "github/hyosubkim/bayes-toolbox",
-	"title": "github/hyosubkim/bayes-toolbox",
-	"url": " https://rseng.github.io/software/repository/github/hyosubkim/bayes-toolbox",
-	"content": "bayes-toolbox"
+	"github/tidymess-code/tidymess": {
+	"id": "github/tidymess-code/tidymess",
+	"title": "github/tidymess-code/tidymess",
+	"url": " https://rseng.github.io/software/repository/github/tidymess-code/tidymess",
+	"content": "Tidal Dynamics of Multi-body ExtraSolar Systems"
 	},
-	"github/shirtsgroup/physical_validation": {
-	"id": "github/shirtsgroup/physical_validation",
-	"title": "github/shirtsgroup/physical_validation",
-	"url": " https://rseng.github.io/software/repository/github/shirtsgroup/physical_validation",
-	"content": "Physical validation of molecular simulations"
+	"github/tum-esm/pyra": {
+	"id": "github/tum-esm/pyra",
+	"title": "github/tum-esm/pyra",
+	"url": " https://rseng.github.io/software/repository/github/tum-esm/pyra",
+	"content": "Pyra: Automated EM27/SUN Greenhouse Gas Measurement Software"
 	},
-	"github/ageller/firefly": {
-	"id": "github/ageller/firefly",
-	"title": "github/ageller/firefly",
-	"url": " https://rseng.github.io/software/repository/github/ageller/firefly",
-	"content": "A WebGL interactive particle viewer"
+	"github/byuflowlab/GXBeam.jl": {
+	"id": "github/byuflowlab/GXBeam.jl",
+	"title": "github/byuflowlab/GXBeam.jl",
+	"url": " https://rseng.github.io/software/repository/github/byuflowlab/GXBeam.jl",
+	"content": "Pure Julia Implementation of Geometrically Exact Beam Theory"
 	},
-	"github/kcleal/gw": {
-	"id": "github/kcleal/gw",
-	"title": "github/kcleal/gw",
-	"url": " https://rseng.github.io/software/repository/github/kcleal/gw",
-	"content": "Genome browser and variant annotation"
+	"github/NeoGeographyToolkit/StereoPipeline": {
+	"id": "github/NeoGeographyToolkit/StereoPipeline",
+	"title": "github/NeoGeographyToolkit/StereoPipeline",
+	"url": " https://rseng.github.io/software/repository/github/NeoGeographyToolkit/StereoPipeline",
+	"content": "The NASA Ames Stereo Pipeline is a suite of automated geodesy &amp; stereogrammetry tools designed for processing planetary imagery captured from orbiting and landed robotic explorers on other planets."
 	},
-	"github/CEMeNT-PSAAP/MCDC": {
-	"id": "github/CEMeNT-PSAAP/MCDC",
-	"title": "github/CEMeNT-PSAAP/MCDC",
-	"url": " https://rseng.github.io/software/repository/github/CEMeNT-PSAAP/MCDC",
-	"content": "MC/DC: Monte Carlo Dynamic Code"
+	"github/AstroChem/VISIBLE": {
+	"id": "github/AstroChem/VISIBLE",
+	"title": "github/AstroChem/VISIBLE",
+	"url": " https://rseng.github.io/software/repository/github/AstroChem/VISIBLE",
+	"content": "VISIbility Based Line Extraction"
 	},
-	"github/multiscale/muscle3": {
-	"id": "github/multiscale/muscle3",
-	"title": "github/multiscale/muscle3",
-	"url": " https://rseng.github.io/software/repository/github/multiscale/muscle3",
-	"content": "The third major version of the MUltiScale Coupling Library and Environment"
+	"github/deepmind/alphafold": {
+	"id": "github/deepmind/alphafold",
+	"title": "github/deepmind/alphafold",
+	"url": " https://rseng.github.io/software/repository/github/deepmind/alphafold",
+	"content": "Open source code for AlphaFold."
 	},
-	"github/EvolBioInf/phylonium": {
-	"id": "github/EvolBioInf/phylonium",
-	"title": "github/EvolBioInf/phylonium",
-	"url": " https://rseng.github.io/software/repository/github/EvolBioInf/phylonium",
-	"content": "♥ Fast and Accurate Estimation of Evolutionary Distances"
+	"github/chenwuperth/rgz_rcnn": {
+	"id": "github/chenwuperth/rgz_rcnn",
+	"title": "github/chenwuperth/rgz_rcnn",
+	"url": " https://rseng.github.io/software/repository/github/chenwuperth/rgz_rcnn",
+	"content": "ClaRAN: A deep learning classifier for radio morphologies"
 	},
-	"github/EvolBioInf/andi": {
-	"id": "github/EvolBioInf/andi",
-	"title": "github/EvolBioInf/andi",
-	"url": " https://rseng.github.io/software/repository/github/EvolBioInf/andi",
-	"content": "♥ Efficient Estimation of Evolutionary Distances"
+	"github/dartoon/galight": {
+	"id": "github/dartoon/galight",
+	"title": "github/dartoon/galight",
+	"url": " https://rseng.github.io/software/repository/github/dartoon/galight",
+	"content": "A python package that decompose the light into PSF and Sersic, fitting based on lenstronomy"
 	},
-	"github/franpoz/SHERLOCK": {
-	"id": "github/franpoz/SHERLOCK",
-	"title": "github/franpoz/SHERLOCK",
-	"url": " https://rseng.github.io/software/repository/github/franpoz/SHERLOCK",
-	"content": "Easy and versatile open-source  code to explore Kepler, K2 and TESS data in the search for exoplanets"
+	"github/Mik3M4n/BaCoN": {
+	"id": "github/Mik3M4n/BaCoN",
+	"title": "github/Mik3M4n/BaCoN",
+	"url": " https://rseng.github.io/software/repository/github/Mik3M4n/BaCoN",
+	"content": "BAyesian COsmological Network - a bayesian neural network for classification of dark energy/modified gravity power spectra"
 	},
-	"github/mkplummer/Imber": {
-	"id": "github/mkplummer/Imber",
-	"title": "github/mkplummer/Imber",
-	"url": " https://rseng.github.io/software/repository/github/mkplummer/Imber",
-	"content": "Python module for both numerical simulation of stellar/substellar surfaces and fitting the resulting spectral line profiles and photometric light curves with analytical models."
+	"github/Mik3M4n/EF-TIGRE": {
+	"id": "github/Mik3M4n/EF-TIGRE",
+	"title": "github/Mik3M4n/EF-TIGRE",
+	"url": " https://rseng.github.io/software/repository/github/Mik3M4n/EF-TIGRE",
+	"content": "Effective Field Theory of Interacting dark energy with Gravitational REdshift"
 	},
-	"github/hsocasnavarro/NICOLE": {
-	"id": "github/hsocasnavarro/NICOLE",
-	"title": "github/hsocasnavarro/NICOLE",
-	"url": " https://rseng.github.io/software/repository/github/hsocasnavarro/NICOLE",
-	"content": "NLTE Stokes Synthesis/Inversion Code"
+	"github/barnesgroupICL/Driftfusion": {
+	"id": "github/barnesgroupICL/Driftfusion",
+	"title": "github/barnesgroupICL/Driftfusion",
+	"url": " https://rseng.github.io/software/repository/github/barnesgroupICL/Driftfusion",
+	"content": "An open source drift diffusion code based in MATLAB for simulating solar cells"
 	},
-	"github/rossfadely/star-galaxy-classification": {
-	"id": "github/rossfadely/star-galaxy-classification",
-	"title": "github/rossfadely/star-galaxy-classification",
-	"url": " https://rseng.github.io/software/repository/github/rossfadely/star-galaxy-classification",
-	"content": "Classification of astronomical objects using photometry"
+	"github/rhyspoulton/OrbWeaver": {
+	"id": "github/rhyspoulton/OrbWeaver",
+	"title": "github/rhyspoulton/OrbWeaver",
+	"url": " https://rseng.github.io/software/repository/github/rhyspoulton/OrbWeaver",
+	"content": "Galaxy/(sub)halo orbital processing tool"
 	},
-	"github/DistrictDataLabs/yellowbrick": {
-	"id": "github/DistrictDataLabs/yellowbrick",
-	"title": "github/DistrictDataLabs/yellowbrick",
-	"url": " https://rseng.github.io/software/repository/github/DistrictDataLabs/yellowbrick",
-	"content": "Visual analysis and diagnostic tools to facilitate machine learning model selection."
+	"github/rhyspoulton/WhereWolf": {
+	"id": "github/rhyspoulton/WhereWolf",
+	"title": "github/rhyspoulton/WhereWolf",
+	"url": " https://rseng.github.io/software/repository/github/rhyspoulton/WhereWolf",
+	"content": "Galaxy/(sub)Halo ghosting tool for N-body simulations"
 	},
-	"github/VincentAlcazer/StatAid": {
-	"id": "github/VincentAlcazer/StatAid",
-	"title": "github/VincentAlcazer/StatAid",
-	"url": " https://rseng.github.io/software/repository/github/VincentAlcazer/StatAid",
-	"content": "StatAid is a Shiny app built in an R package to guide researchers and clinicians through data analysis"
+	"github/cedrus-opensource/pyxid": {
+	"id": "github/cedrus-opensource/pyxid",
+	"title": "github/cedrus-opensource/pyxid",
+	"url": " https://rseng.github.io/software/repository/github/cedrus-opensource/pyxid",
+	"content": "Pure python library for communicating with Cedrus XID devices"
 	},
-	"github/kircherlab/ReMM": {
-	"id": "github/kircherlab/ReMM",
-	"title": "github/kircherlab/ReMM",
-	"url": " https://rseng.github.io/software/repository/github/kircherlab/ReMM",
-	"content": "ReMM score snakemake workflow "
+	"github/rroyaute/h2_breeders_equation": {
+	"id": "github/rroyaute/h2_breeders_equation",
+	"title": "github/rroyaute/h2_breeders_equation",
+	"url": " https://rseng.github.io/software/repository/github/rroyaute/h2_breeders_equation",
+	"content": "Shiny application for interactive Evolution teaching activity on heritability and making use of the Breeder&#39;s equation"
 	},
-	"github/kircherlab/cfDNA-UniFlow": {
-	"id": "github/kircherlab/cfDNA-UniFlow",
-	"title": "github/kircherlab/cfDNA-UniFlow",
-	"url": " https://rseng.github.io/software/repository/github/kircherlab/cfDNA-UniFlow",
-	"content": "Workflow for preprocessing cfDNA samples."
+	"github/eggnogdb/eggnog-mapper": {
+	"id": "github/eggnogdb/eggnog-mapper",
+	"title": "github/eggnogdb/eggnog-mapper",
+	"url": " https://rseng.github.io/software/repository/github/eggnogdb/eggnog-mapper",
+	"content": "Fast genome-wide functional annotation through orthology assignment."
 	},
-	"github/csbioinfopk/iSumoK-PseAAC": {
-	"id": "github/csbioinfopk/iSumoK-PseAAC",
-	"title": "github/csbioinfopk/iSumoK-PseAAC",
-	"url": " https://rseng.github.io/software/repository/github/csbioinfopk/iSumoK-PseAAC",
-	"content": "This is a GitHub repository page that is maintained by Bioinformatics Lab at the Department of Computer Science, University of Management and Technology, Lahore, Pakistan."
+	"github/HinodeXRT/xrtpy": {
+	"id": "github/HinodeXRT/xrtpy",
+	"title": "github/HinodeXRT/xrtpy",
+	"url": " https://rseng.github.io/software/repository/github/HinodeXRT/xrtpy",
+	"content": "None"
 	},
-	"github/CGATOxford/UMI-tools": {
-	"id": "github/CGATOxford/UMI-tools",
-	"title": "github/CGATOxford/UMI-tools",
-	"url": " https://rseng.github.io/software/repository/github/CGATOxford/UMI-tools",
-	"content": "Tools for handling Unique Molecular Identifiers in NGS data sets"
+	"github/herrsalmi/FConverter": {
+	"id": "github/herrsalmi/FConverter",
+	"title": "github/herrsalmi/FConverter",
+	"url": " https://rseng.github.io/software/repository/github/herrsalmi/FConverter",
+	"content": "File format converter for FImpute2"
 	},
-	"github/Alymantara/pydoppler": {
-	"id": "github/Alymantara/pydoppler",
-	"title": "github/Alymantara/pydoppler",
-	"url": " https://rseng.github.io/software/repository/github/Alymantara/pydoppler",
-	"content": "A python wrapper for Henk Spruit&#39;s doppler tomography software"
+	"github/athulpg007/AMAT": {
+	"id": "github/athulpg007/AMAT",
+	"title": "github/athulpg007/AMAT",
+	"url": " https://rseng.github.io/software/repository/github/athulpg007/AMAT",
+	"content": "Home of the Aerocapture Mission Analysis Tool (AMAT). For project documentation visit:"
 	},
-	"github/gheald/rmclean": {
-	"id": "github/gheald/rmclean",
-	"title": "github/gheald/rmclean",
-	"url": " https://rseng.github.io/software/repository/github/gheald/rmclean",
-	"content": "RM-CLEAN for miriad"
+	"github/bihealth/sodar_core": {
+	"id": "github/bihealth/sodar_core",
+	"title": "github/bihealth/sodar_core",
+	"url": " https://rseng.github.io/software/repository/github/bihealth/sodar_core",
+	"content": "Django-based framework for building scientific data management web apps."
 	},
-	"github/rohinkumar/correlcalc": {
-	"id": "github/rohinkumar/correlcalc",
-	"title": "github/rohinkumar/correlcalc",
-	"url": " https://rseng.github.io/software/repository/github/rohinkumar/correlcalc",
-	"content": "A Python package to calculate 2-point correlation function from galaxy redshift surveys for any generic model of Cosmology or geometry"
+	"github/davidsoergel/rtax": {
+	"id": "github/davidsoergel/rtax",
+	"title": "github/davidsoergel/rtax",
+	"url": " https://rseng.github.io/software/repository/github/davidsoergel/rtax",
+	"content": "Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene."
 	},
-	"github/astroML/gatspy": {
-	"id": "github/astroML/gatspy",
-	"title": "github/astroML/gatspy",
-	"url": " https://rseng.github.io/software/repository/github/astroML/gatspy",
-	"content": "General tools for Astronomical Time Series in Python"
+	"github/COMBINE-lab/alevin-fry": {
+	"id": "github/COMBINE-lab/alevin-fry",
+	"title": "github/COMBINE-lab/alevin-fry",
+	"url": " https://rseng.github.io/software/repository/github/COMBINE-lab/alevin-fry",
+	"content": "🐟 🔬🦀  alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding."
 	},
-	"github/peterjc/galaxy_blast": {
-	"id": "github/peterjc/galaxy_blast",
-	"title": "github/peterjc/galaxy_blast",
-	"url": " https://rseng.github.io/software/repository/github/peterjc/galaxy_blast",
-	"content": "Galaxy wrappers for NCBI BLAST+ and related BLAST tools."
+	"github/COMBINE-lab/pufferfish": {
+	"id": "github/COMBINE-lab/pufferfish",
+	"title": "github/COMBINE-lab/pufferfish",
+	"url": " https://rseng.github.io/software/repository/github/COMBINE-lab/pufferfish",
+	"content": "An efficient index for the colored, compacted, de Bruijn graph"
 	},
-	"github/biomed-AI/GraphBepi": {
-	"id": "github/biomed-AI/GraphBepi",
-	"title": "github/biomed-AI/GraphBepi",
-	"url": " https://rseng.github.io/software/repository/github/biomed-AI/GraphBepi",
-	"content": "None"
+	"github/COMBINE-lab/simpleaf": {
+	"id": "github/COMBINE-lab/simpleaf",
+	"title": "github/COMBINE-lab/simpleaf",
+	"url": " https://rseng.github.io/software/repository/github/COMBINE-lab/simpleaf",
+	"content": "A rust framework to make using alevin-fry even simpler"
 	},
-	"github/JianjunTan-Beijing/LPI-CSFFR": {
-	"id": "github/JianjunTan-Beijing/LPI-CSFFR",
-	"title": "github/JianjunTan-Beijing/LPI-CSFFR",
-	"url": " https://rseng.github.io/software/repository/github/JianjunTan-Beijing/LPI-CSFFR",
-	"content": "None"
+	"github/COMBINE-lab/cuttlefish": {
+	"id": "github/COMBINE-lab/cuttlefish",
+	"title": "github/COMBINE-lab/cuttlefish",
+	"url": " https://rseng.github.io/software/repository/github/COMBINE-lab/cuttlefish",
+	"content": "a fast, parallel, and very lightweight memory tool to construct the compacted de Bruijn graph from genome reference(s)."
 	},
-	"github/FRED-2/OptiType": {
-	"id": "github/FRED-2/OptiType",
-	"title": "github/FRED-2/OptiType",
-	"url": " https://rseng.github.io/software/repository/github/FRED-2/OptiType",
-	"content": "Precision HLA typing from next-generation sequencing data"
+	"github/COMBINE-lab/salmon": {
+	"id": "github/COMBINE-lab/salmon",
+	"title": "github/COMBINE-lab/salmon",
+	"url": " https://rseng.github.io/software/repository/github/COMBINE-lab/salmon",
+	"content": "🐟 🍣 🍱 Highly-accurate &amp; wicked fast transcript-level quantification from RNA-seq reads using selective alignment"
 	},
-	"github/isaackd/wcloud": {
-	"id": "github/isaackd/wcloud",
-	"title": "github/isaackd/wcloud",
-	"url": " https://rseng.github.io/software/repository/github/isaackd/wcloud",
-	"content": "Create word clouds"
+	"github/COMBINE-lab/libgff": {
+	"id": "github/COMBINE-lab/libgff",
+	"title": "github/COMBINE-lab/libgff",
+	"url": " https://rseng.github.io/software/repository/github/COMBINE-lab/libgff",
+	"content": "GFF/GTF parsing from cufflinks as a library"
 	},
-	"github/YangLab/RNAlight": {
-	"id": "github/YangLab/RNAlight",
-	"title": "github/YangLab/RNAlight",
-	"url": " https://rseng.github.io/software/repository/github/YangLab/RNAlight",
-	"content": "a machine learning model to identify nucleotide features determining RNA subcellular localization"
+	"github/COMBINE-lab/RapMap": {
+	"id": "github/COMBINE-lab/RapMap",
+	"title": "github/COMBINE-lab/RapMap",
+	"url": " https://rseng.github.io/software/repository/github/COMBINE-lab/RapMap",
+	"content": "Rapid sensitive and accurate read mapping via quasi-mapping"
 	},
-	"github/YangLab/CIRCexplorer2": {
-	"id": "github/YangLab/CIRCexplorer2",
-	"title": "github/YangLab/CIRCexplorer2",
-	"url": " https://rseng.github.io/software/repository/github/YangLab/CIRCexplorer2",
-	"content": "a comprehensive and integrative circular RNA analysis toolset."
+	"github/COMBINE-lab/terminus": {
+	"id": "github/COMBINE-lab/terminus",
+	"title": "github/COMBINE-lab/terminus",
+	"url": " https://rseng.github.io/software/repository/github/COMBINE-lab/terminus",
+	"content": "enables the discovery of data-driven, robust transcript groups from RNA-seq data."
 	},
-	"github/biolab/orange-bio": {
-	"id": "github/biolab/orange-bio",
-	"title": "github/biolab/orange-bio",
-	"url": " https://rseng.github.io/software/repository/github/biolab/orange-bio",
-	"content": "None"
+	"github/AngusWright/LAMBDAR": {
+	"id": "github/AngusWright/LAMBDAR",
+	"title": "github/AngusWright/LAMBDAR",
+	"url": " https://rseng.github.io/software/repository/github/AngusWright/LAMBDAR",
+	"content": "LAMBDAR: Lambda Adaptive Multi-Band Deblending Algorithm in R"
 	},
-	"github/biolab/orange3-network": {
-	"id": "github/biolab/orange3-network",
-	"title": "github/biolab/orange3-network",
-	"url": " https://rseng.github.io/software/repository/github/biolab/orange3-network",
-	"content": "🍊 🕸 Network analysis add-on for Orange data mining suite."
+	"github/GWang2022/iGDP": {
+	"id": "github/GWang2022/iGDP",
+	"title": "github/GWang2022/iGDP",
+	"url": " https://rseng.github.io/software/repository/github/GWang2022/iGDP",
+	"content": "An integrated Genome Decontamination Pipeline for wild ciliated microeukaryotes"
 	},
-	"github/biolab/orange3": {
-	"id": "github/biolab/orange3",
-	"title": "github/biolab/orange3",
-	"url": " https://rseng.github.io/software/repository/github/biolab/orange3",
-	"content": "🍊 :bar_chart: :bulb: Orange: Interactive data analysis https://orange.biolab.si"
+	"github/arviz-devs/preliz": {
+	"id": "github/arviz-devs/preliz",
+	"title": "github/arviz-devs/preliz",
+	"url": " https://rseng.github.io/software/repository/github/arviz-devs/preliz",
+	"content": "Tools to help you pick a prior"
 	},
-	"github/jordanlab/STing": {
-	"id": "github/jordanlab/STing",
-	"title": "github/jordanlab/STing",
-	"url": " https://rseng.github.io/software/repository/github/jordanlab/STing",
-	"content": "Ultrafast sequence typing and gene detection from NGS raw reads"
+	"github/arviz-devs/arviz": {
+	"id": "github/arviz-devs/arviz",
+	"title": "github/arviz-devs/arviz",
+	"url": " https://rseng.github.io/software/repository/github/arviz-devs/arviz",
+	"content": "Exploratory analysis of Bayesian models with Python"
 	},
-	"github/tbep-tech/tbeptools": {
-	"id": "github/tbep-tech/tbeptools",
-	"title": "github/tbep-tech/tbeptools",
-	"url": " https://rseng.github.io/software/repository/github/tbep-tech/tbeptools",
-	"content": "R package for Tampa Bay Estuary Program functions"
+	"github/christopher-vollmers/C3POa": {
+	"id": "github/christopher-vollmers/C3POa",
+	"title": "github/christopher-vollmers/C3POa",
+	"url": " https://rseng.github.io/software/repository/github/christopher-vollmers/C3POa",
+	"content": "(Concatemeric Consensus Caller with Partial Order alignments) is a computational pipeline for calling consensi on R2C2 nanopore data."
 	},
-	"github/mtakahiro/gsf": {
-	"id": "github/mtakahiro/gsf",
-	"title": "github/mtakahiro/gsf",
-	"url": " https://rseng.github.io/software/repository/github/mtakahiro/gsf",
-	"content": "Grism SED Fitting package"
+	"github/mjoppich/bioGUItools": {
+	"id": "github/mjoppich/bioGUItools",
+	"title": "github/mjoppich/bioGUItools",
+	"url": " https://rseng.github.io/software/repository/github/mjoppich/bioGUItools",
+	"content": "Tools for bioGUI (e.g. CWL Parser/argparse2biogui/...)"
 	},
-	"github/fdebras/ECLIPS3D": {
-	"id": "github/fdebras/ECLIPS3D",
-	"title": "github/fdebras/ECLIPS3D",
-	"url": " https://rseng.github.io/software/repository/github/fdebras/ECLIPS3D",
-	"content": "Public code for linear wave and circulation calculations, developed originally for planetary atmospheres."
+	"github/amueller/word_cloud": {
+	"id": "github/amueller/word_cloud",
+	"title": "github/amueller/word_cloud",
+	"url": " https://rseng.github.io/software/repository/github/amueller/word_cloud",
+	"content": "A little word cloud generator in Python"
 	},
-	"github/richteague/disksurf": {
-	"id": "github/richteague/disksurf",
-	"title": "github/richteague/disksurf",
-	"url": " https://rseng.github.io/software/repository/github/richteague/disksurf",
-	"content": "Measure the molecular emission surface of protoplanetary disks. Based on Pinte et al. (2018)."
+	"github/mlares/hearsay": {
+	"id": "github/mlares/hearsay",
+	"title": "github/mlares/hearsay",
+	"url": " https://rseng.github.io/software/repository/github/mlares/hearsay",
+	"content": "Simulations for the probability of alien contact"
 	},
-	"github/richteague/eddy": {
-	"id": "github/richteague/eddy",
-	"title": "github/richteague/eddy",
-	"url": " https://rseng.github.io/software/repository/github/richteague/eddy",
-	"content": "Python tools to recover precise rotation profiles of disks."
+	"github/citation-file-format/cff-initializer-javascript": {
+	"id": "github/citation-file-format/cff-initializer-javascript",
+	"title": "github/citation-file-format/cff-initializer-javascript",
+	"url": " https://rseng.github.io/software/repository/github/citation-file-format/cff-initializer-javascript",
+	"content": "Web form to initialize CITATION.cff files."
 	},
-	"github/richteague/bettermoments": {
-	"id": "github/richteague/bettermoments",
-	"title": "github/richteague/bettermoments",
-	"url": " https://rseng.github.io/software/repository/github/richteague/bettermoments",
-	"content": "A robust way to calculate line-of-sight velocities."
+	"github/citation-file-format/cff-converter-python": {
+	"id": "github/citation-file-format/cff-converter-python",
+	"title": "github/citation-file-format/cff-converter-python",
+	"url": " https://rseng.github.io/software/repository/github/citation-file-format/cff-converter-python",
+	"content": "Command line utility to read CITATION.cff file from a GitHub url or local file and convert it to BibTex and other formats."
 	},
-	"github/richteague/gofish": {
-	"id": "github/richteague/gofish",
-	"title": "github/richteague/gofish",
-	"url": " https://rseng.github.io/software/repository/github/richteague/gofish",
-	"content": "🎣    Fish for line detections by exploiting the known velocity structure of the disk."
+	"github/citation-file-format/citation-file-format": {
+	"id": "github/citation-file-format/citation-file-format",
+	"title": "github/citation-file-format/citation-file-format",
+	"url": " https://rseng.github.io/software/repository/github/citation-file-format/citation-file-format",
+	"content": "The Citation File Format lets you provide citation metadata for software or datasets in plaintext files that are easy to read by both humans and machines."
 	},
-	"github/ADThomas-astro/oxaf": {
-	"id": "github/ADThomas-astro/oxaf",
-	"title": "github/ADThomas-astro/oxaf",
-	"url": " https://rseng.github.io/software/repository/github/ADThomas-astro/oxaf",
-	"content": "None"
+	"github/citation-file-format/cffconvert-github-action": {
+	"id": "github/citation-file-format/cffconvert-github-action",
+	"title": "github/citation-file-format/cffconvert-github-action",
+	"url": " https://rseng.github.io/software/repository/github/citation-file-format/cffconvert-github-action",
+	"content": "GitHub action to validate CITATION.cff files, and convert to other citation formats."
 	},
-	"github/fpavogt/E0102-VR": {
-	"id": "github/fpavogt/E0102-VR",
-	"title": "github/fpavogt/E0102-VR",
-	"url": " https://rseng.github.io/software/repository/github/fpavogt/E0102-VR",
-	"content": "An experimental VR application to visualize the 3D map of the oxygen-bright ejecta in SNR 1E 0102.2-7219"
+	"github/luntergroup/octopus": {
+	"id": "github/luntergroup/octopus",
+	"title": "github/luntergroup/octopus",
+	"url": " https://rseng.github.io/software/repository/github/luntergroup/octopus",
+	"content": "Bayesian haplotype-based mutation calling"
 	},
-	"github/fpavogt/fcmaker": {
-	"id": "github/fpavogt/fcmaker",
-	"title": "github/fpavogt/fcmaker",
-	"url": " https://rseng.github.io/software/repository/github/fpavogt/fcmaker",
-	"content": "An automated finding-chart-making program for Observing Blocks on p2."
+	"github/mad-lab-fau/tpcp": {
+	"id": "github/mad-lab-fau/tpcp",
+	"title": "github/mad-lab-fau/tpcp",
+	"url": " https://rseng.github.io/software/repository/github/mad-lab-fau/tpcp",
+	"content": "Pipeline and Dataset helpers for complex algorithm evaluation."
 	},
-	"github/bioexcel/biobb_wf_flexdyn": {
-	"id": "github/bioexcel/biobb_wf_flexdyn",
-	"title": "github/bioexcel/biobb_wf_flexdyn",
-	"url": " https://rseng.github.io/software/repository/github/bioexcel/biobb_wf_flexdyn",
-	"content": "None"
+	"github/mad-lab-fau/imucal": {
+	"id": "github/mad-lab-fau/imucal",
+	"title": "github/mad-lab-fau/imucal",
+	"url": " https://rseng.github.io/software/repository/github/mad-lab-fau/imucal",
+	"content": "A Python library to calibrate 6 DOF IMUs"
 	},
-	"github/SCECcode/pycsep": {
-	"id": "github/SCECcode/pycsep",
-	"title": "github/SCECcode/pycsep",
-	"url": " https://rseng.github.io/software/repository/github/SCECcode/pycsep",
-	"content": "Tools to help earthquake forecast model developers build and evaluate their forecasts"
+	"github/MiguelEA/nudec_BSM": {
+	"id": "github/MiguelEA/nudec_BSM",
+	"title": "github/MiguelEA/nudec_BSM",
+	"url": " https://rseng.github.io/software/repository/github/MiguelEA/nudec_BSM",
+	"content": "Neutrino Decoupling Beyond the Standard Model"
 	},
-	"github/pw31/GGchem": {
-	"id": "github/pw31/GGchem",
-	"title": "github/pw31/GGchem",
-	"url": " https://rseng.github.io/software/repository/github/pw31/GGchem",
-	"content": "fast thermo-chemical equilibrium code with or without equilibrium condensation down to 100K "
+	"github/tariks/peakachu": {
+	"id": "github/tariks/peakachu",
+	"title": "github/tariks/peakachu",
+	"url": " https://rseng.github.io/software/repository/github/tariks/peakachu",
+	"content": "Genome-wide contact analysis using sklearn"
 	},
-	"github/CSUBioGroup/GraphLncLoc": {
-	"id": "github/CSUBioGroup/GraphLncLoc",
-	"title": "github/CSUBioGroup/GraphLncLoc",
-	"url": " https://rseng.github.io/software/repository/github/CSUBioGroup/GraphLncLoc",
+	"github/yogi-tud/space_gpu": {
+	"id": "github/yogi-tud/space_gpu",
+	"title": "github/yogi-tud/space_gpu",
+	"url": " https://rseng.github.io/software/repository/github/yogi-tud/space_gpu",
 	"content": "None"
 	},
-	"github/msalibian/RBF": {
-	"id": "github/msalibian/RBF",
-	"title": "github/msalibian/RBF",
-	"url": " https://rseng.github.io/software/repository/github/msalibian/RBF",
-	"content": "A Robust backfitting algorithm"
+	"github/BapMel/mesocalc": {
+	"id": "github/BapMel/mesocalc",
+	"title": "github/BapMel/mesocalc",
+	"url": " https://rseng.github.io/software/repository/github/BapMel/mesocalc",
+	"content": "MesoCalc is a Mesopotamian calculator."
 	},
-	"github/labsyspharm/minerva-story": {
-	"id": "github/labsyspharm/minerva-story",
-	"title": "github/labsyspharm/minerva-story",
-	"url": " https://rseng.github.io/software/repository/github/labsyspharm/minerva-story",
-	"content": "Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images."
+	"github/C-Briddon/SELCIE": {
+	"id": "github/C-Briddon/SELCIE",
+	"title": "github/C-Briddon/SELCIE",
+	"url": " https://rseng.github.io/software/repository/github/C-Briddon/SELCIE",
+	"content": "None"
 	},
-	"github/mindearth/mobilkit": {
-	"id": "github/mindearth/mobilkit",
-	"title": "github/mindearth/mobilkit",
-	"url": " https://rseng.github.io/software/repository/github/mindearth/mobilkit",
-	"content": "A Python Toolkit for Urban Resilience and Disaster Risk Management Analytics using High Frequency Human Mobility Data"
+	"github/eXtremeGravityInstitute/QuickCBC": {
+	"id": "github/eXtremeGravityInstitute/QuickCBC",
+	"title": "github/eXtremeGravityInstitute/QuickCBC",
+	"url": " https://rseng.github.io/software/repository/github/eXtremeGravityInstitute/QuickCBC",
+	"content": "Rapid and Reliable Inference for Binary Mergers"
 	},
-	"github/zhangjunpeng411/SCOM": {
-	"id": "github/zhangjunpeng411/SCOM",
-	"title": "github/zhangjunpeng411/SCOM",
-	"url": " https://rseng.github.io/software/repository/github/zhangjunpeng411/SCOM",
-	"content": "Pan-cancer characterization of ncRNA synergistic competition"
+	"github/eXtremeGravityInstitute/LISA-Massive-Black-Hole": {
+	"id": "github/eXtremeGravityInstitute/LISA-Massive-Black-Hole",
+	"title": "github/eXtremeGravityInstitute/LISA-Massive-Black-Hole",
+	"url": " https://rseng.github.io/software/repository/github/eXtremeGravityInstitute/LISA-Massive-Black-Hole",
+	"content": "None"
 	},
-	"github/zhangjunpeng411/Scan": {
-	"id": "github/zhangjunpeng411/Scan",
-	"title": "github/zhangjunpeng411/Scan",
-	"url": " https://rseng.github.io/software/repository/github/zhangjunpeng411/Scan",
-	"content": "Scanning sample-specific miRNA regulation from bulk and single-cell RNA-sequencing data"
+	"github/engyasin/Offline_MOT": {
+	"id": "github/engyasin/Offline_MOT",
+	"title": "github/engyasin/Offline_MOT",
+	"url": " https://rseng.github.io/software/repository/github/engyasin/Offline_MOT",
+	"content": "Multiple traffic entities detection and tracking from bird-view drone stationary  videos https://engyasin.github.io/Offline_MOT/"
 	},
-	"github/NathanSkene/EWCE": {
-	"id": "github/NathanSkene/EWCE",
-	"title": "github/NathanSkene/EWCE",
-	"url": " https://rseng.github.io/software/repository/github/NathanSkene/EWCE",
-	"content": "Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage."
+	"github/COBRAPROsimulator/COBRAPRO": {
+	"id": "github/COBRAPROsimulator/COBRAPRO",
+	"title": "github/COBRAPROsimulator/COBRAPRO",
+	"url": " https://rseng.github.io/software/repository/github/COBRAPROsimulator/COBRAPRO",
+	"content": "None"
 	},
-	"github/NathanSkene/MAGMA_Celltyping": {
-	"id": "github/NathanSkene/MAGMA_Celltyping",
-	"title": "github/NathanSkene/MAGMA_Celltyping",
-	"url": " https://rseng.github.io/software/repository/github/NathanSkene/MAGMA_Celltyping",
-	"content": "Find causal cell-types underlying complex trait genetics"
+	"github/bulik/ldsc": {
+	"id": "github/bulik/ldsc",
+	"title": "github/bulik/ldsc",
+	"url": " https://rseng.github.io/software/repository/github/bulik/ldsc",
+	"content": "LD Score Regression (LDSC)"
 	},
-	"github/fenderglass/Ragout": {
-	"id": "github/fenderglass/Ragout",
-	"title": "github/fenderglass/Ragout",
-	"url": " https://rseng.github.io/software/repository/github/fenderglass/Ragout",
-	"content": "Chromosome-level scaffolding using multiple references"
+	"github/pyspeckit/pyspeckit": {
+	"id": "github/pyspeckit/pyspeckit",
+	"title": "github/pyspeckit/pyspeckit",
+	"url": " https://rseng.github.io/software/repository/github/pyspeckit/pyspeckit",
+	"content": "Python Spectroscopic Toolkit"
+	},
+	"github/jean-pierreBoth/gsearch": {
+	"id": "github/jean-pierreBoth/gsearch",
+	"title": "github/jean-pierreBoth/gsearch",
+	"url": " https://rseng.github.io/software/repository/github/jean-pierreBoth/gsearch",
+	"content": "Approximate nearest neighbour search for microbial genomes based on hash metric"
 	},
-	"github/fenderglass/Flye": {
-	"id": "github/fenderglass/Flye",
-	"title": "github/fenderglass/Flye",
-	"url": " https://rseng.github.io/software/repository/github/fenderglass/Flye",
-	"content": "De novo assembler for single molecule sequencing reads using repeat graphs"
+	"github/getzlab/rnaseqc": {
+	"id": "github/getzlab/rnaseqc",
+	"title": "github/getzlab/rnaseqc",
+	"url": " https://rseng.github.io/software/repository/github/getzlab/rnaseqc",
+	"content": "Fast, efficient RNA-Seq metrics for quality control and process optimization"
 	},
-	"github/forrest-lab/scMatch": {
-	"id": "github/forrest-lab/scMatch",
-	"title": "github/forrest-lab/scMatch",
-	"url": " https://rseng.github.io/software/repository/github/forrest-lab/scMatch",
-	"content": "scMatch: a single-cell gene expression profile annotation tool using reference datasets"
+	"github/sonjageorgievska/CClusTera": {
+	"id": "github/sonjageorgievska/CClusTera",
+	"title": "github/sonjageorgievska/CClusTera",
+	"url": " https://rseng.github.io/software/repository/github/sonjageorgievska/CClusTera",
+	"content": "A javascript library for interactive hierarchical visualization of 3D points (suitable for large hierarchical datasets) . Based on graphosaurus.js (https://github.com/frewsxcv/graphosaurus), which runs on Three.js. "
 	},
-	"github/saezlab/PHONEMeS": {
-	"id": "github/saezlab/PHONEMeS",
-	"title": "github/saezlab/PHONEMeS",
-	"url": " https://rseng.github.io/software/repository/github/saezlab/PHONEMeS",
-	"content": " PHONEMeS (PHOsphorylation NEtworks for Mass Spectrometry) is an R package   to model signalling networks based on untargeted phosphoproteomics"
+	"github/gdalle/HiddenMarkovModels.jl": {
+	"id": "github/gdalle/HiddenMarkovModels.jl",
+	"title": "github/gdalle/HiddenMarkovModels.jl",
+	"url": " https://rseng.github.io/software/repository/github/gdalle/HiddenMarkovModels.jl",
+	"content": "A Julia package for simulation, inference and learning of Hidden Markov Models."
 	},
-	"github/dingyaozhang/Evitar": {
-	"id": "github/dingyaozhang/Evitar",
-	"title": "github/dingyaozhang/Evitar",
-	"url": " https://rseng.github.io/software/repository/github/dingyaozhang/Evitar",
+	"github/MaudeDavidLab/GMEmbeddings": {
+	"id": "github/MaudeDavidLab/GMEmbeddings",
+	"title": "github/MaudeDavidLab/GMEmbeddings",
+	"url": " https://rseng.github.io/software/repository/github/MaudeDavidLab/GMEmbeddings",
 	"content": "None"
 	},
-	"github/expressionanalysis/ea-utils": {
-	"id": "github/expressionanalysis/ea-utils",
-	"title": "github/expressionanalysis/ea-utils",
-	"url": " https://rseng.github.io/software/repository/github/expressionanalysis/ea-utils",
-	"content": "Automatically exported from code.google.com/p/ea-utils"
+	"github/EACcodes/TigerCI": {
+	"id": "github/EACcodes/TigerCI",
+	"title": "github/EACcodes/TigerCI",
+	"url": " https://rseng.github.io/software/repository/github/EACcodes/TigerCI",
+	"content": "None"
 	},
-	"github/cjbarrie/academictwitteR": {
-	"id": "github/cjbarrie/academictwitteR",
-	"title": "github/cjbarrie/academictwitteR",
-	"url": " https://rseng.github.io/software/repository/github/cjbarrie/academictwitteR",
-	"content": "Repo for academictwitteR package to query the Twitter Academic Research Product Track v2 API endpoint."
+	"github/justyncw/STAR_MELT": {
+	"id": "github/justyncw/STAR_MELT",
+	"title": "github/justyncw/STAR_MELT",
+	"url": " https://rseng.github.io/software/repository/github/justyncw/STAR_MELT",
+	"content": "Repository for the STAR-MELT emission line analysis Jupyter notebook and Python package"
 	},
-	"github/peterk87/sistr_cmd": {
-	"id": "github/peterk87/sistr_cmd",
-	"title": "github/peterk87/sistr_cmd",
-	"url": " https://rseng.github.io/software/repository/github/peterk87/sistr_cmd",
-	"content": "SISTR (Salmonella In Silico Typing Resource) command-line tool"
+	"github/CobayaSampler/cobaya": {
+	"id": "github/CobayaSampler/cobaya",
+	"title": "github/CobayaSampler/cobaya",
+	"url": " https://rseng.github.io/software/repository/github/CobayaSampler/cobaya",
+	"content": "Code for Bayesian Analysis"
 	},
-	"github/calebclass/Shiny-NanoTube": {
-	"id": "github/calebclass/Shiny-NanoTube",
-	"title": "github/calebclass/Shiny-NanoTube",
-	"url": " https://rseng.github.io/software/repository/github/calebclass/Shiny-NanoTube",
-	"content": "A web app for easier NanoString gene expression analysis"
+	"github/soraxas/sbp-env": {
+	"id": "github/soraxas/sbp-env",
+	"title": "github/soraxas/sbp-env",
+	"url": " https://rseng.github.io/software/repository/github/soraxas/sbp-env",
+	"content": "Motion planning environment for Sampling-based Planners"
 	},
-	"github/TRI-AMDD/GMP-featurizer": {
-	"id": "github/TRI-AMDD/GMP-featurizer",
-	"title": "github/TRI-AMDD/GMP-featurizer",
-	"url": " https://rseng.github.io/software/repository/github/TRI-AMDD/GMP-featurizer",
-	"content": "Feature calculator for GMP features"
+	"github/ntoles/tristan-mp-pitp": {
+	"id": "github/ntoles/tristan-mp-pitp",
+	"title": "github/ntoles/tristan-mp-pitp",
+	"url": " https://rseng.github.io/software/repository/github/ntoles/tristan-mp-pitp",
+	"content": "Particle-in-cell code TRISTAN-MP"
 	},
-	"github/pierrepo/autoclassweb": {
-	"id": "github/pierrepo/autoclassweb",
-	"title": "github/pierrepo/autoclassweb",
-	"url": " https://rseng.github.io/software/repository/github/pierrepo/autoclassweb",
-	"content": "AutoClassWeb: a web app to run AutoClass C Bayesian clustering :package:  :rocket:"
+	"github/MingBit/PySCNet": {
+	"id": "github/MingBit/PySCNet",
+	"title": "github/MingBit/PySCNet",
+	"url": " https://rseng.github.io/software/repository/github/MingBit/PySCNet",
+	"content": "A python package for single cell network analysis"
 	},
-	"github/eabaron/synow": {
-	"id": "github/eabaron/synow",
-	"title": "github/eabaron/synow",
-	"url": " https://rseng.github.io/software/repository/github/eabaron/synow",
+	"github/xfcui/onn4arg": {
+	"id": "github/xfcui/onn4arg",
+	"title": "github/xfcui/onn4arg",
+	"url": " https://rseng.github.io/software/repository/github/xfcui/onn4arg",
 	"content": "None"
 	},
-	"github/galizia-lab/pyview": {
-	"id": "github/galizia-lab/pyview",
-	"title": "github/galizia-lab/pyview",
-	"url": " https://rseng.github.io/software/repository/github/galizia-lab/pyview",
-	"content": "GUI + API for processing and visualizing Calcium imaging data.  Largely based on the IDL software &#34;VIEW&#34; developed by Giovanni Galizia. Implemented in Python by Ajayrama Kumaraswamy"
-	},
-	"github/cwinpy/cwinpy": {
-	"id": "github/cwinpy/cwinpy",
-	"title": "github/cwinpy/cwinpy",
-	"url": " https://rseng.github.io/software/repository/github/cwinpy/cwinpy",
-	"content": "CW Inference in Python"
+	"github/Martindelosrios/MeSsI": {
+	"id": "github/Martindelosrios/MeSsI",
+	"title": "github/Martindelosrios/MeSsI",
+	"url": " https://rseng.github.io/software/repository/github/Martindelosrios/MeSsI",
+	"content": "None"
 	},
-	"github/fulcrumgenomics/fgbio": {
-	"id": "github/fulcrumgenomics/fgbio",
-	"title": "github/fulcrumgenomics/fgbio",
-	"url": " https://rseng.github.io/software/repository/github/fulcrumgenomics/fgbio",
-	"content": "Tools for working with genomic and high throughput sequencing data."
+	"github/Martindelosrios/cosmic-kite": {
+	"id": "github/Martindelosrios/cosmic-kite",
+	"title": "github/Martindelosrios/cosmic-kite",
+	"url": " https://rseng.github.io/software/repository/github/Martindelosrios/cosmic-kite",
+	"content": "None"
 	},
-	"github/LucIJspeert/eclipsr": {
-	"id": "github/LucIJspeert/eclipsr",
-	"title": "github/LucIJspeert/eclipsr",
-	"url": " https://rseng.github.io/software/repository/github/LucIJspeert/eclipsr",
-	"content": "Recipe to fully automatically find individual eclipses in light curves, determine ephemerides and more"
+	"github/Martindelosrios/ROGER": {
+	"id": "github/Martindelosrios/ROGER",
+	"title": "github/Martindelosrios/ROGER",
+	"url": " https://rseng.github.io/software/repository/github/Martindelosrios/ROGER",
+	"content": "None"
 	},
-	"github/LucIJspeert/star_shadow": {
-	"id": "github/LucIJspeert/star_shadow",
-	"title": "github/LucIJspeert/star_shadow",
-	"url": " https://rseng.github.io/software/repository/github/LucIJspeert/star_shadow",
-	"content": "Recipe to fully automatically analyse eclipsing binary light curves and find eccentricity and more"
+	"github/bethgelab/foolbox": {
+	"id": "github/bethgelab/foolbox",
+	"title": "github/bethgelab/foolbox",
+	"url": " https://rseng.github.io/software/repository/github/bethgelab/foolbox",
+	"content": "A Python toolbox to create adversarial examples that fool neural networks in PyTorch, TensorFlow, and JAX"
 	},
-	"github/brandon-rhodes/python-jplephem": {
-	"id": "github/brandon-rhodes/python-jplephem",
-	"title": "github/brandon-rhodes/python-jplephem",
-	"url": " https://rseng.github.io/software/repository/github/brandon-rhodes/python-jplephem",
-	"content": "Python version of NASA DE4xx ephemerides, the basis for the Astronomical Alamanac"
+	"github/zhwm/SparsePro_Paper": {
+	"id": "github/zhwm/SparsePro_Paper",
+	"title": "github/zhwm/SparsePro_Paper",
+	"url": " https://rseng.github.io/software/repository/github/zhwm/SparsePro_Paper",
+	"content": "Code repo for SparsePro Paper"
 	},
-	"github/twesterhout/lattice-symmetries": {
-	"id": "github/twesterhout/lattice-symmetries",
-	"title": "github/twesterhout/lattice-symmetries",
-	"url": " https://rseng.github.io/software/repository/github/twesterhout/lattice-symmetries",
-	"content": "A package to simplify working with symmetry-adapted quantum many-body bases. Provides a good foundation for writing custom exact diagonalization and variational Monte Carlo software"
+	"github/lyf222/alpconv": {
+	"id": "github/lyf222/alpconv",
+	"title": "github/lyf222/alpconv",
+	"url": " https://rseng.github.io/software/repository/github/lyf222/alpconv",
+	"content": "calculating alp-photon conversion"
 	},
-	"github/rikenbit/nnTensor": {
-	"id": "github/rikenbit/nnTensor",
-	"title": "github/rikenbit/nnTensor",
-	"url": " https://rseng.github.io/software/repository/github/rikenbit/nnTensor",
-	"content": "R package for Non-negative Tensor Decomposition"
+	"github/vincentvaneylen/k2photometry": {
+	"id": "github/vincentvaneylen/k2photometry",
+	"title": "github/vincentvaneylen/k2photometry",
+	"url": " https://rseng.github.io/software/repository/github/vincentvaneylen/k2photometry",
+	"content": "Read, reduce and detrend K2 photometry and search for transiting planets"
 	},
-	"github/rikenbit/iTensor": {
-	"id": "github/rikenbit/iTensor",
-	"title": "github/rikenbit/iTensor",
-	"url": " https://rseng.github.io/software/repository/github/rikenbit/iTensor",
-	"content": "R package for ICA-based Matrix/Tensor Decomposition"
+	"github/ELELAB/cancermuts": {
+	"id": "github/ELELAB/cancermuts",
+	"title": "github/ELELAB/cancermuts",
+	"url": " https://rseng.github.io/software/repository/github/ELELAB/cancermuts",
+	"content": "Software for the automatic annotation of cancer mutations"
 	},
-	"github/rikenbit/dcTensor": {
-	"id": "github/rikenbit/dcTensor",
-	"title": "github/rikenbit/dcTensor",
-	"url": " https://rseng.github.io/software/repository/github/rikenbit/dcTensor",
-	"content": "R package for Discrete Matrix/Tensor Decomposition"
+	"github/ELELAB/LipidDyn": {
+	"id": "github/ELELAB/LipidDyn",
+	"title": "github/ELELAB/LipidDyn",
+	"url": " https://rseng.github.io/software/repository/github/ELELAB/LipidDyn",
+	"content": "repository associated to our pipeline for lipid dynamics"
 	},
-	"github/exosports/homer": {
-	"id": "github/exosports/homer",
-	"title": "github/exosports/homer",
-	"url": " https://rseng.github.io/software/repository/github/exosports/homer",
-	"content": "Helper Of My Eternal Retrievals"
+	"github/ELELAB/CAncer-bioMarker-Prediction-Pipeline-CAMPP": {
+	"id": "github/ELELAB/CAncer-bioMarker-Prediction-Pipeline-CAMPP",
+	"title": "github/ELELAB/CAncer-bioMarker-Prediction-Pipeline-CAMPP",
+	"url": " https://rseng.github.io/software/repository/github/ELELAB/CAncer-bioMarker-Prediction-Pipeline-CAMPP",
+	"content": "The Cancer bioMarker Prediction Pipeline (CAMPP) "
 	},
-	"github/exosports/BART": {
-	"id": "github/exosports/BART",
-	"title": "github/exosports/BART",
-	"url": " https://rseng.github.io/software/repository/github/exosports/BART",
-	"content": "Bayesian Atmospheric Radiative Transfer fitting code"
+	"github/ELELAB/RosettaDDGPrediction": {
+	"id": "github/ELELAB/RosettaDDGPrediction",
+	"title": "github/ELELAB/RosettaDDGPrediction",
+	"url": " https://rseng.github.io/software/repository/github/ELELAB/RosettaDDGPrediction",
+	"content": "None"
 	},
-	"github/exosports/MARGE": {
-	"id": "github/exosports/MARGE",
-	"title": "github/exosports/MARGE",
-	"url": " https://rseng.github.io/software/repository/github/exosports/MARGE",
-	"content": "Machine learning Algorithm for Radiative transfer of Generated Exoplanets"
+	"github/traja-team/traja": {
+	"id": "github/traja-team/traja",
+	"title": "github/traja-team/traja",
+	"url": " https://rseng.github.io/software/repository/github/traja-team/traja",
+	"content": "Python tools for spatial trajectory and time-series data analysis"
 	},
-	"github/exosports/transit": {
-	"id": "github/exosports/transit",
-	"title": "github/exosports/transit",
-	"url": " https://rseng.github.io/software/repository/github/exosports/transit",
-	"content": "Radiative-transfer code for planetary atmospheres"
+	"github/somefunAgba/NLSIG-COVID19Lab": {
+	"id": "github/somefunAgba/NLSIG-COVID19Lab",
+	"title": "github/somefunAgba/NLSIG-COVID19Lab",
+	"url": " https://rseng.github.io/software/repository/github/somefunAgba/NLSIG-COVID19Lab",
+	"content": "A nlogistic-sigmoid playground for modelling the COVID-19 pandemic growth"
 	},
-	"github/r-cas/caracas": {
-	"id": "github/r-cas/caracas",
-	"title": "github/r-cas/caracas",
-	"url": " https://rseng.github.io/software/repository/github/r-cas/caracas",
-	"content": "Computer algebra in R"
+	"github/ihmwg/python-modelcif": {
+	"id": "github/ihmwg/python-modelcif",
+	"title": "github/ihmwg/python-modelcif",
+	"url": " https://rseng.github.io/software/repository/github/ihmwg/python-modelcif",
+	"content": " Python package for handling ModelCIF mmCIF and BinaryCIF files "
 	},
-	"github/mbaes/SpheCow": {
-	"id": "github/mbaes/SpheCow",
-	"title": "github/mbaes/SpheCow",
-	"url": " https://rseng.github.io/software/repository/github/mbaes/SpheCow",
-	"content": "Flexible dynamical models for galaxies and dark matter haloes "
+	"github/duducosmos/pycosmicstar": {
+	"id": "github/duducosmos/pycosmicstar",
+	"title": "github/duducosmos/pycosmicstar",
+	"url": " https://rseng.github.io/software/repository/github/duducosmos/pycosmicstar",
+	"content": "The Cosmic Star Formation Rate Model"
 	},
-	"github/jaimerzp/limberjack.jl": {
-	"id": "github/jaimerzp/limberjack.jl",
-	"title": "github/jaimerzp/limberjack.jl",
-	"url": " https://rseng.github.io/software/repository/github/jaimerzp/limberjack.jl",
-	"content": "Auto-differentiable methods for Cosmology"
+	"github/Glogobyte/miRGalaxy": {
+	"id": "github/Glogobyte/miRGalaxy",
+	"title": "github/Glogobyte/miRGalaxy",
+	"url": " https://rseng.github.io/software/repository/github/Glogobyte/miRGalaxy",
+	"content": "miRGalaxy: a Galaxy‑based framework for interactive analysis of microRNA and isomiR sequencing data"
 	},
-	"github/sina-cb/Tn-seqExplorer": {
-	"id": "github/sina-cb/Tn-seqExplorer",
-	"title": "github/sina-cb/Tn-seqExplorer",
-	"url": " https://rseng.github.io/software/repository/github/sina-cb/Tn-seqExplorer",
-	"content": "Tn-seq Explorer allows users to explore and analyze Tn-seq data for prokaryotic (bacterial or archaeal) genomes. It implements two alternative methods for identification of essential genes and provides additional tools to investigate the Tn-seq data. The primary goal of the data analysis is to study fitness by identifying genes that are essential or beneficial under specific growth conditions."
+	"github/alexander-shen/rtest": {
+	"id": "github/alexander-shen/rtest",
+	"title": "github/alexander-shen/rtest",
+	"url": " https://rseng.github.io/software/repository/github/alexander-shen/rtest",
+	"content": "Robust tests of randomness adapted from different sources"
 	},
-	"github/tobiasrausch/lorax": {
-	"id": "github/tobiasrausch/lorax",
-	"title": "github/tobiasrausch/lorax",
-	"url": " https://rseng.github.io/software/repository/github/tobiasrausch/lorax",
-	"content": "A long-read analysis toolbox for cancer genomics"
+	"github/jboynyc/textnets": {
+	"id": "github/jboynyc/textnets",
+	"title": "github/jboynyc/textnets",
+	"url": " https://rseng.github.io/software/repository/github/jboynyc/textnets",
+	"content": "Text analysis with networks."
 	},
-	"github/tobiasrausch/alfred": {
-	"id": "github/tobiasrausch/alfred",
-	"title": "github/tobiasrausch/alfred",
-	"url": " https://rseng.github.io/software/repository/github/tobiasrausch/alfred",
-	"content": "BAM Statistics, Feature Counting and Annotation"
+	"github/CFSAN-Biostatistics/SeroTools": {
+	"id": "github/CFSAN-Biostatistics/SeroTools",
+	"title": "github/CFSAN-Biostatistics/SeroTools",
+	"url": " https://rseng.github.io/software/repository/github/CFSAN-Biostatistics/SeroTools",
+	"content": "A toolkit and repository for the White-Kauffmann-Le Minor scheme for Salmonella serotyping."
 	},
-	"github/tobiasrausch/wally": {
-	"id": "github/tobiasrausch/wally",
-	"title": "github/tobiasrausch/wally",
-	"url": " https://rseng.github.io/software/repository/github/tobiasrausch/wally",
-	"content": "Wally: Visualization of aligned sequencing reads and contigs"
+	"github/neurogeriatricskiel/NGMT": {
+	"id": "github/neurogeriatricskiel/NGMT",
+	"title": "github/neurogeriatricskiel/NGMT",
+	"url": " https://rseng.github.io/software/repository/github/neurogeriatricskiel/NGMT",
+	"content": "Python based toolbox for processing motion data"
 	},
-	"github/AWehrhahn/SME": {
-	"id": "github/AWehrhahn/SME",
-	"title": "github/AWehrhahn/SME",
-	"url": " https://rseng.github.io/software/repository/github/AWehrhahn/SME",
-	"content": "Spectroscopy Made Easy"
+	"github/Orin-beep/PlasGO": {
+	"id": "github/Orin-beep/PlasGO",
+	"title": "github/Orin-beep/PlasGO",
+	"url": " https://rseng.github.io/software/repository/github/Orin-beep/PlasGO",
+	"content": "None"
 	},
-	"github/bio-ontology-research-group/deepgoplus": {
-	"id": "github/bio-ontology-research-group/deepgoplus",
-	"title": "github/bio-ontology-research-group/deepgoplus",
-	"url": " https://rseng.github.io/software/repository/github/bio-ontology-research-group/deepgoplus",
-	"content": "DeepGO with GOPlus axioms"
+	"github/zhanghe9704/tpsa": {
+	"id": "github/zhanghe9704/tpsa",
+	"title": "github/zhanghe9704/tpsa",
+	"url": " https://rseng.github.io/software/repository/github/zhanghe9704/tpsa",
+	"content": "C++ and Python TPSA/DA codes"
 	},
-	"github/InsightSoftwareConsortium/ITK": {
-	"id": "github/InsightSoftwareConsortium/ITK",
-	"title": "github/InsightSoftwareConsortium/ITK",
-	"url": " https://rseng.github.io/software/repository/github/InsightSoftwareConsortium/ITK",
-	"content": "Insight Toolkit (ITK) -- Official Repository"
+	"github/RongquanWang/ELF-DPC": {
+	"id": "github/RongquanWang/ELF-DPC",
+	"title": "github/RongquanWang/ELF-DPC",
+	"url": " https://rseng.github.io/software/repository/github/RongquanWang/ELF-DPC",
+	"content": "An ensemble learning framework for detecting protein complexes from PPI networks"
 	},
-	"github/AFD-Illinois/ebhlight": {
-	"id": "github/AFD-Illinois/ebhlight",
-	"title": "github/AFD-Illinois/ebhlight",
-	"url": " https://rseng.github.io/software/repository/github/AFD-Illinois/ebhlight",
-	"content": "Two-temperature General Relativistic Radiation Magnetohydrodynamics"
+	"github/dingyaozhang/Evitar": {
+	"id": "github/dingyaozhang/Evitar",
+	"title": "github/dingyaozhang/Evitar",
+	"url": " https://rseng.github.io/software/repository/github/dingyaozhang/Evitar",
+	"content": "None"
 	},
-	"github/AFD-Illinois/iharm3d": {
-	"id": "github/AFD-Illinois/iharm3d",
-	"title": "github/AFD-Illinois/iharm3d",
-	"url": " https://rseng.github.io/software/repository/github/AFD-Illinois/iharm3d",
-	"content": "Hybrid MPI/OpenMP 3D HARM with vectorization"
+	"github/JuliaLang/julia": {
+	"id": "github/JuliaLang/julia",
+	"title": "github/JuliaLang/julia",
+	"url": " https://rseng.github.io/software/repository/github/JuliaLang/julia",
+	"content": "The Julia Language: A fresh approach to technical computing."
 	},
-	"github/astrostat/Automark": {
-	"id": "github/astrostat/Automark",
-	"title": "github/astrostat/Automark",
-	"url": " https://rseng.github.io/software/repository/github/astrostat/Automark",
-	"content": "Automatic marking of marked Poisson process in astronomical high-dimensional datasets"
+	"github/SpectraCollab/ORMIR_XCT": {
+	"id": "github/SpectraCollab/ORMIR_XCT",
+	"title": "github/SpectraCollab/ORMIR_XCT",
+	"url": " https://rseng.github.io/software/repository/github/SpectraCollab/ORMIR_XCT",
+	"content": "Code developed at the 2022 ORMIR workshop in Maastricht, Netherlands"
 	},
-	"github/astrostat/LIRA": {
-	"id": "github/astrostat/LIRA",
-	"title": "github/astrostat/LIRA",
-	"url": " https://rseng.github.io/software/repository/github/astrostat/LIRA",
-	"content": "Low-counts Image Reconstruction and Analysis"
+	"github/Libensemble/libensemble": {
+	"id": "github/Libensemble/libensemble",
+	"title": "github/Libensemble/libensemble",
+	"url": " https://rseng.github.io/software/repository/github/Libensemble/libensemble",
+	"content": "A Python toolkit for coordinating asynchronous and dynamic ensembles of calculations."
 	},
-	"github/astrostat/BASCS": {
-	"id": "github/astrostat/BASCS",
-	"title": "github/astrostat/BASCS",
-	"url": " https://rseng.github.io/software/repository/github/astrostat/BASCS",
-	"content": "Bayesian Separation of Close Sources"
+	"github/kambrian/SubGen": {
+	"id": "github/kambrian/SubGen",
+	"title": "github/kambrian/SubGen",
+	"url": " https://rseng.github.io/software/repository/github/kambrian/SubGen",
+	"content": "a fast subhalo sampler"
 	},
-	"github/CDSP-SCPO/dataverse-feed": {
-	"id": "github/CDSP-SCPO/dataverse-feed",
-	"title": "github/CDSP-SCPO/dataverse-feed",
-	"url": " https://rseng.github.io/software/repository/github/CDSP-SCPO/dataverse-feed",
-	"content": "Embed a feed of your Dataverse items (collections, datasets, files) in your webpage using the Dataverse search API. JavaScript module built with Svelte and Snowpack."
+	"github/matsen/pplacer": {
+	"id": "github/matsen/pplacer",
+	"title": "github/matsen/pplacer",
+	"url": " https://rseng.github.io/software/repository/github/matsen/pplacer",
+	"content": "Phylogenetic placement and downstream analysis"
 	},
-	"github/CDSP-SCPO/metadata-middleware": {
-	"id": "github/CDSP-SCPO/metadata-middleware",
-	"title": "github/CDSP-SCPO/metadata-middleware",
-	"url": " https://rseng.github.io/software/repository/github/CDSP-SCPO/metadata-middleware",
-	"content": "None"
+	"github/Balaje/iceFem": {
+	"id": "github/Balaje/iceFem",
+	"title": "github/Balaje/iceFem",
+	"url": " https://rseng.github.io/software/repository/github/Balaje/iceFem",
+	"content": "Contains FreeFem source codes for modelling wave induced ice-shelf vibrations"
 	},
-	"github/CDSP-SCPO/WPSS-for-ESS-webpanel": {
-	"id": "github/CDSP-SCPO/WPSS-for-ESS-webpanel",
-	"title": "github/CDSP-SCPO/WPSS-for-ESS-webpanel",
-	"url": " https://rseng.github.io/software/repository/github/CDSP-SCPO/WPSS-for-ESS-webpanel",
-	"content": "None"
+	"github/joshspeagle/dynesty": {
+	"id": "github/joshspeagle/dynesty",
+	"title": "github/joshspeagle/dynesty",
+	"url": " https://rseng.github.io/software/repository/github/joshspeagle/dynesty",
+	"content": "Dynamic Nested Sampling package for computing Bayesian posteriors and evidences"
 	},
-	"github/potassco/clingo": {
-	"id": "github/potassco/clingo",
-	"title": "github/potassco/clingo",
-	"url": " https://rseng.github.io/software/repository/github/potassco/clingo",
-	"content": "🤔 A grounder and solver for logic programs."
+	"github/BiaPyX/BiaPy": {
+	"id": "github/BiaPyX/BiaPy",
+	"title": "github/BiaPyX/BiaPy",
+	"url": " https://rseng.github.io/software/repository/github/BiaPyX/BiaPy",
+	"content": "Open source Python library for building bioimage analysis pipelines"
 	},
-	"github/tahirulqamar/Deep-HPI-pred": {
-	"id": "github/tahirulqamar/Deep-HPI-pred",
-	"title": "github/tahirulqamar/Deep-HPI-pred",
-	"url": " https://rseng.github.io/software/repository/github/tahirulqamar/Deep-HPI-pred",
-	"content": "None"
+	"github/fairdataihub/SPARClink": {
+	"id": "github/fairdataihub/SPARClink",
+	"title": "github/fairdataihub/SPARClink",
+	"url": " https://rseng.github.io/software/repository/github/fairdataihub/SPARClink",
+	"content": "SPARClink: Visualizing the Impact of SPARC"
 	},
-	"github/hetalang/heta-compiler": {
-	"id": "github/hetalang/heta-compiler",
-	"title": "github/hetalang/heta-compiler",
-	"url": " https://rseng.github.io/software/repository/github/hetalang/heta-compiler",
-	"content": "Software tool for the compilation of Heta-based QSP modeling platform"
+	"github/CederGroupHub/smol": {
+	"id": "github/CederGroupHub/smol",
+	"title": "github/CederGroupHub/smol",
+	"url": " https://rseng.github.io/software/repository/github/CederGroupHub/smol",
+	"content": "Statistical Mechanics on Lattices"
 	},
-	"github/ReGIS-org/regis-v2": {
-	"id": "github/ReGIS-org/regis-v2",
-	"title": "github/ReGIS-org/regis-v2",
-	"url": " https://rseng.github.io/software/repository/github/ReGIS-org/regis-v2",
-	"content": "Angular-4 and cesiumjs based."
+	"github/CederGroupHub/sparse-lm": {
+	"id": "github/CederGroupHub/sparse-lm",
+	"title": "github/CederGroupHub/sparse-lm",
+	"url": " https://rseng.github.io/software/repository/github/CederGroupHub/sparse-lm",
+	"content": "Sparse Linear Regression Models"
 	},
-	"github/mauropieroni/fastpta": {
-	"id": "github/mauropieroni/fastpta",
-	"title": "github/mauropieroni/fastpta",
-	"url": " https://rseng.github.io/software/repository/github/mauropieroni/fastpta",
-	"content": "A python code to forecast the sensitivity of future Pulsar Timing Array (PTA) configurations and assess the parameter estimation of Stochastic Gravitational Wave Background (SGWB)"
+	"github/smog-server/OpenSMOG": {
+	"id": "github/smog-server/OpenSMOG",
+	"title": "github/smog-server/OpenSMOG",
+	"url": " https://rseng.github.io/software/repository/github/smog-server/OpenSMOG",
+	"content": "OpenSMOG is a Python library for performing molecular dynamics simulations using Structure-Based Models. OpenSMOG uses OpenMM."
 	},
-	"github/mjcarley/nbi": {
-	"id": "github/mjcarley/nbi",
-	"title": "github/mjcarley/nbi",
-	"url": " https://rseng.github.io/software/repository/github/mjcarley/nbi",
-	"content": "Nystrom Boundary Integral codes for Laplace and Helmholtz problems"
+	"github/rhdtownsend/gyre": {
+	"id": "github/rhdtownsend/gyre",
+	"title": "github/rhdtownsend/gyre",
+	"url": " https://rseng.github.io/software/repository/github/rhdtownsend/gyre",
+	"content": "The GYRE Stellar Oscillation Code"
 	},
-	"github/ybillchen/particle_spray": {
-	"id": "github/ybillchen/particle_spray",
-	"title": "github/ybillchen/particle_spray",
-	"url": " https://rseng.github.io/software/repository/github/ybillchen/particle_spray",
-	"content": "Particle spray algorithm by Chen et al. (2024)."
+	"github/hippylib/soupy": {
+	"id": "github/hippylib/soupy",
+	"title": "github/hippylib/soupy",
+	"url": " https://rseng.github.io/software/repository/github/hippylib/soupy",
+	"content": "Stochastic Optimization under Uncertainty in Python."
 	},
-	"github/CmPA/iPic3D": {
-	"id": "github/CmPA/iPic3D",
-	"title": "github/CmPA/iPic3D",
-	"url": " https://rseng.github.io/software/repository/github/CmPA/iPic3D",
-	"content": "Particle-in-Cell code using the implicit moment method"
+	"github/JCGonzS/mechnetor": {
+	"id": "github/JCGonzS/mechnetor",
+	"title": "github/JCGonzS/mechnetor",
+	"url": " https://rseng.github.io/software/repository/github/JCGonzS/mechnetor",
+	"content": "Protein Interaction Visualization"
 	},
-	"github/mdlreyes/void-dwarf-analysis": {
-	"id": "github/mdlreyes/void-dwarf-analysis",
-	"title": "github/mdlreyes/void-dwarf-analysis",
-	"url": " https://rseng.github.io/software/repository/github/mdlreyes/void-dwarf-analysis",
-	"content": "Reduction and analysis code used to measure kinematics of void dwarf galaxies"
+	"github/ahmedmagds/GNUVID": {
+	"id": "github/ahmedmagds/GNUVID",
+	"title": "github/ahmedmagds/GNUVID",
+	"url": " https://rseng.github.io/software/repository/github/ahmedmagds/GNUVID",
+	"content": "Gene Novelty Unit-based Virus Identification for SARS-CoV-2"
 	},
-	"github/BradyAJohnston/MolecularNodes": {
-	"id": "github/BradyAJohnston/MolecularNodes",
-	"title": "github/BradyAJohnston/MolecularNodes",
-	"url": " https://rseng.github.io/software/repository/github/BradyAJohnston/MolecularNodes",
-	"content": "Toolbox for molecular animations in Blender, powered by Geometry Nodes."
+	"github/bfarr/exocartographer": {
+	"id": "github/bfarr/exocartographer",
+	"title": "github/bfarr/exocartographer",
+	"url": " https://rseng.github.io/software/repository/github/bfarr/exocartographer",
+	"content": "A forward-modeling tool for constraining surface maps orbital parameters of exoplanets from time-resolved photometry"
 	},
-	"github/ptriska/WavesDash": {
-	"id": "github/ptriska/WavesDash",
-	"title": "github/ptriska/WavesDash",
-	"url": " https://rseng.github.io/software/repository/github/ptriska/WavesDash",
-	"content": "A web application for visualization of wastewater sequencing results"
+	"github/bfarr/kombine": {
+	"id": "github/bfarr/kombine",
+	"title": "github/bfarr/kombine",
+	"url": " https://rseng.github.io/software/repository/github/bfarr/kombine",
+	"content": "A kernel-density-based, embarrassingly parallel ensemble sampler"
 	},
-	"github/koustavchandra/gwforge": {
-	"id": "github/koustavchandra/gwforge",
-	"title": "github/koustavchandra/gwforge",
-	"url": " https://rseng.github.io/software/repository/github/koustavchandra/gwforge",
-	"content": "A lightweight code to generate mock gravitational wave detector data using user-defined population and arbritary detector sensitivity."
+	"github/ec-jrc/nrt": {
+	"id": "github/ec-jrc/nrt",
+	"title": "github/ec-jrc/nrt",
+	"url": " https://rseng.github.io/software/repository/github/ec-jrc/nrt",
+	"content": "Near Real Time monitoring of satellite image time-series"
 	},
-	"github/jpmens/jo": {
-	"id": "github/jpmens/jo",
-	"title": "github/jpmens/jo",
-	"url": " https://rseng.github.io/software/repository/github/jpmens/jo",
-	"content": "JSON output from a shell"
+	"github/ChristopherWilks/megadepth": {
+	"id": "github/ChristopherWilks/megadepth",
+	"title": "github/ChristopherWilks/megadepth",
+	"url": " https://rseng.github.io/software/repository/github/ChristopherWilks/megadepth",
+	"content": "BigWig and BAM utilities"
 	},
-	"github/cb-geo/mpm": {
-	"id": "github/cb-geo/mpm",
-	"title": "github/cb-geo/mpm",
-	"url": " https://rseng.github.io/software/repository/github/cb-geo/mpm",
-	"content": "CB-Geo High-Performance Material Point Method"
+	"github/Dailer/RCausticMass": {
+	"id": "github/Dailer/RCausticMass",
+	"title": "github/Dailer/RCausticMass",
+	"url": " https://rseng.github.io/software/repository/github/Dailer/RCausticMass",
+	"content": "Caustic Mass Estimator for Galaxy Clusters"
 	},
-	"github/thomasdenecker/START-R": {
-	"id": "github/thomasdenecker/START-R",
-	"title": "github/thomasdenecker/START-R",
-	"url": " https://rseng.github.io/software/repository/github/thomasdenecker/START-R",
-	"content": "Simple Tool for Analysis of Replication Timing with R"
+	"github/genner-lab/meta-fish-lib": {
+	"id": "github/genner-lab/meta-fish-lib",
+	"title": "github/genner-lab/meta-fish-lib",
+	"url": " https://rseng.github.io/software/repository/github/genner-lab/meta-fish-lib",
+	"content": "A generalised, dynamic DNA reference library for metabarcoding of fishes"
 	},
-	"github/nnssa/gallumi_public": {
-	"id": "github/nnssa/gallumi_public",
-	"title": "github/nnssa/gallumi_public",
-	"url": " https://rseng.github.io/software/repository/github/nnssa/gallumi_public",
-	"content": "A Galaxy Luminosity Function Pipeline for Cosmology and Astrophysics"
+	"github/StingraySoftware/stingray": {
+	"id": "github/StingraySoftware/stingray",
+	"title": "github/StingraySoftware/stingray",
+	"url": " https://rseng.github.io/software/repository/github/StingraySoftware/stingray",
+	"content": "Anything can happen in the next half hour (including spectral timing made easy)!"
 	},
-	"github/skyfielders/python-skyfield": {
-	"id": "github/skyfielders/python-skyfield",
-	"title": "github/skyfielders/python-skyfield",
-	"url": " https://rseng.github.io/software/repository/github/skyfielders/python-skyfield",
-	"content": "Elegant astronomy for Python"
+	"github/StingraySoftware/HENDRICS": {
+	"id": "github/StingraySoftware/HENDRICS",
+	"title": "github/StingraySoftware/HENDRICS",
+	"url": " https://rseng.github.io/software/repository/github/StingraySoftware/HENDRICS",
+	"content": "Shell scripts for spectral-timing analysis of X-ray astronomical data."
 	},
-	"github/qpv-research-group/solcore5": {
-	"id": "github/qpv-research-group/solcore5",
-	"title": "github/qpv-research-group/solcore5",
-	"url": " https://rseng.github.io/software/repository/github/qpv-research-group/solcore5",
-	"content": "A multi-scale, python-based library for the modelling of solar cells and semiconductor materials"
+	"github/gdefazio/kMetaShot": {
+	"id": "github/gdefazio/kMetaShot",
+	"title": "github/gdefazio/kMetaShot",
+	"url": " https://rseng.github.io/software/repository/github/gdefazio/kMetaShot",
+	"content": "None"
 	},
-	"github/BitSeq/BitSeq": {
-	"id": "github/BitSeq/BitSeq",
-	"title": "github/BitSeq/BitSeq",
-	"url": " https://rseng.github.io/software/repository/github/BitSeq/BitSeq",
-	"content": "BitSeq code"
+	"github/standage/AEGeAn": {
+	"id": "github/standage/AEGeAn",
+	"title": "github/standage/AEGeAn",
+	"url": " https://rseng.github.io/software/repository/github/standage/AEGeAn",
+	"content": "Integrated toolkit for analysis and evaluation of annotated genomes"
 	},
-	"github/ska-sa/hibayes": {
-	"id": "github/ska-sa/hibayes",
-	"title": "github/ska-sa/hibayes",
-	"url": " https://rseng.github.io/software/repository/github/ska-sa/hibayes",
-	"content": "Reverend 21 work"
+	"github/youngjookim/sdr": {
+	"id": "github/youngjookim/sdr",
+	"title": "github/youngjookim/sdr",
+	"url": " https://rseng.github.io/software/repository/github/youngjookim/sdr",
+	"content": "None"
 	},
-	"github/ska-sa/katdal": {
-	"id": "github/ska-sa/katdal",
-	"title": "github/ska-sa/katdal",
-	"url": " https://rseng.github.io/software/repository/github/ska-sa/katdal",
-	"content": "Data access library for the MeerKAT radio telescope"
+	"github/mzkhalid039/DWBuilder": {
+	"id": "github/mzkhalid039/DWBuilder",
+	"title": "github/mzkhalid039/DWBuilder",
+	"url": " https://rseng.github.io/software/repository/github/mzkhalid039/DWBuilder",
+	"content": "Ferroelectric/Ferroelastic domain wall builder"
 	},
-	"github/cog-imperial/GPdoemd": {
-	"id": "github/cog-imperial/GPdoemd",
-	"title": "github/cog-imperial/GPdoemd",
-	"url": " https://rseng.github.io/software/repository/github/cog-imperial/GPdoemd",
-	"content": "Design of experiments for model discrimination using Gaussian process surrogate models"
+	"github/bpp/bpp": {
+	"id": "github/bpp/bpp",
+	"title": "github/bpp/bpp",
+	"url": " https://rseng.github.io/software/repository/github/bpp/bpp",
+	"content": "implements a versatile high-performance version of the BPP software"
 	},
-	"github/cog-imperial/galini": {
-	"id": "github/cog-imperial/galini",
-	"title": "github/cog-imperial/galini",
-	"url": " https://rseng.github.io/software/repository/github/cog-imperial/galini",
-	"content": "An extensible MINLP solver"
+	"github/nithyanandan/PRISim": {
+	"id": "github/nithyanandan/PRISim",
+	"title": "github/nithyanandan/PRISim",
+	"url": " https://rseng.github.io/software/repository/github/nithyanandan/PRISim",
+	"content": "Precision Radio Interferometry Simulator (for radio astronomy applications)"
 	},
-	"github/cog-imperial/entmoot": {
-	"id": "github/cog-imperial/entmoot",
-	"title": "github/cog-imperial/entmoot",
-	"url": " https://rseng.github.io/software/repository/github/cog-imperial/entmoot",
-	"content": "None"
+	"github/0x0f0f0f/Metatheory.jl": {
+	"id": "github/0x0f0f0f/Metatheory.jl",
+	"title": "github/0x0f0f0f/Metatheory.jl",
+	"url": " https://rseng.github.io/software/repository/github/0x0f0f0f/Metatheory.jl",
+	"content": "General purpose metaprogramming and algebraic computation library for the Julia programming language"
 	},
-	"github/cog-imperial/suspect": {
-	"id": "github/cog-imperial/suspect",
-	"title": "github/cog-imperial/suspect",
-	"url": " https://rseng.github.io/software/repository/github/cog-imperial/suspect",
-	"content": "Special Structure Detection for Pyomo"
+	"github/hoechenberger/questplus": {
+	"id": "github/hoechenberger/questplus",
+	"title": "github/hoechenberger/questplus",
+	"url": " https://rseng.github.io/software/repository/github/hoechenberger/questplus",
+	"content": "A QUEST+ implementation  in Python."
 	},
-	"github/JuliaSmoothOptimizers/PDENLPModels.jl": {
-	"id": "github/JuliaSmoothOptimizers/PDENLPModels.jl",
-	"title": "github/JuliaSmoothOptimizers/PDENLPModels.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaSmoothOptimizers/PDENLPModels.jl",
-	"content": "A NLPModel API for optimization problems with PDE-constraints"
+	"github/SamDuffield/bmm": {
+	"id": "github/SamDuffield/bmm",
+	"title": "github/SamDuffield/bmm",
+	"url": " https://rseng.github.io/software/repository/github/SamDuffield/bmm",
+	"content": "Map-matching using particle smoothing methods."
 	},
-	"github/JuliaSmoothOptimizers/DCISolver.jl": {
-	"id": "github/JuliaSmoothOptimizers/DCISolver.jl",
-	"title": "github/JuliaSmoothOptimizers/DCISolver.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaSmoothOptimizers/DCISolver.jl",
-	"content": "None"
+	"github/VNNikolaidis/nnlib2Rcpp": {
+	"id": "github/VNNikolaidis/nnlib2Rcpp",
+	"title": "github/VNNikolaidis/nnlib2Rcpp",
+	"url": " https://rseng.github.io/software/repository/github/VNNikolaidis/nnlib2Rcpp",
+	"content": "An R package for Neural Nets created using nnlib2"
 	},
-	"github/nutjunkie/IQmol": {
-	"id": "github/nutjunkie/IQmol",
-	"title": "github/nutjunkie/IQmol",
-	"url": " https://rseng.github.io/software/repository/github/nutjunkie/IQmol",
-	"content": "IQmol is an open source molecular editor and visualization package"
+	"github/openneuropet/PET2BIDS": {
+	"id": "github/openneuropet/PET2BIDS",
+	"title": "github/openneuropet/PET2BIDS",
+	"url": " https://rseng.github.io/software/repository/github/openneuropet/PET2BIDS",
+	"content": "PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side files like .e.g excel sheets -- paper @JOSS  https://doi.org/10.21105/joss.06067"
 	},
-	"github/smith-chem-wisc/ProteaseGuru": {
-	"id": "github/smith-chem-wisc/ProteaseGuru",
-	"title": "github/smith-chem-wisc/ProteaseGuru",
-	"url": " https://rseng.github.io/software/repository/github/smith-chem-wisc/ProteaseGuru",
+	"github/Dulab2020/ARMT": {
+	"id": "github/Dulab2020/ARMT",
+	"title": "github/Dulab2020/ARMT",
+	"url": " https://rseng.github.io/software/repository/github/Dulab2020/ARMT",
 	"content": "None"
 	},
-	"github/smith-chem-wisc/MetaMorpheus": {
-	"id": "github/smith-chem-wisc/MetaMorpheus",
-	"title": "github/smith-chem-wisc/MetaMorpheus",
-	"url": " https://rseng.github.io/software/repository/github/smith-chem-wisc/MetaMorpheus",
-	"content": "Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities"
+	"github/linuxscout/pyarabic": {
+	"id": "github/linuxscout/pyarabic",
+	"title": "github/linuxscout/pyarabic",
+	"url": " https://rseng.github.io/software/repository/github/linuxscout/pyarabic",
+	"content": "pyarabic"
 	},
-	"github/snek5000/snek5000": {
-	"id": "github/snek5000/snek5000",
-	"title": "github/snek5000/snek5000",
-	"url": " https://rseng.github.io/software/repository/github/snek5000/snek5000",
-	"content": ":snake: Python framework for Nek5000 :rocket:"
+	"github/c-martinez/BeyondTheBook": {
+	"id": "github/c-martinez/BeyondTheBook",
+	"title": "github/c-martinez/BeyondTheBook",
+	"url": " https://rseng.github.io/software/repository/github/c-martinez/BeyondTheBook",
+	"content": "Using Wikipedia to assess the translatability of text."
 	},
-	"github/Jacks0nJ/PyFPT": {
-	"id": "github/Jacks0nJ/PyFPT",
-	"title": "github/Jacks0nJ/PyFPT",
-	"url": " https://rseng.github.io/software/repository/github/Jacks0nJ/PyFPT",
-	"content": "Stochastic first-passage time (FPT) simulations using importance sampling."
+	"github/juzikong/photGalIMF": {
+	"id": "github/juzikong/photGalIMF",
+	"title": "github/juzikong/photGalIMF",
+	"url": " https://rseng.github.io/software/repository/github/juzikong/photGalIMF",
+	"content": "supplementary repository of the GalIMF galaxy chemical evolution code to calculate photometric luminosity of simulated galaxies"
 	},
-	"github/jgrembi/riskCommunicator": {
-	"id": "github/jgrembi/riskCommunicator",
-	"title": "github/jgrembi/riskCommunicator",
-	"url": " https://rseng.github.io/software/repository/github/jgrembi/riskCommunicator",
-	"content": "An R package for estimating risk differences and relative risk measures"
+	"github/nanograv/enterprise": {
+	"id": "github/nanograv/enterprise",
+	"title": "github/nanograv/enterprise",
+	"url": " https://rseng.github.io/software/repository/github/nanograv/enterprise",
+	"content": "ENTERPRISE (Enhanced Numerical Toolbox Enabling a Robust PulsaR Inference SuitE) is a pulsar timing analysis code, aimed at noise analysis, gravitational-wave searches, and timing model analysis."
 	},
-	"github/mdruett/COCOPLOT": {
-	"id": "github/mdruett/COCOPLOT",
-	"title": "github/mdruett/COCOPLOT",
-	"url": " https://rseng.github.io/software/repository/github/mdruett/COCOPLOT",
-	"content": "COlor COllapsed PLOTting quick-look and context image software is designed to convey spectral profile information from all of the spatial pixels in a 3D datacube as a single image, using color."
+	"github/nanograv/PINT": {
+	"id": "github/nanograv/PINT",
+	"title": "github/nanograv/PINT",
+	"url": " https://rseng.github.io/software/repository/github/nanograv/PINT",
+	"content": "PINT is not TEMPO3 -- Software for high-precision pulsar timing"
 	},
-	"github/conda-forge/conda-smithy": {
-	"id": "github/conda-forge/conda-smithy",
-	"title": "github/conda-forge/conda-smithy",
-	"url": " https://rseng.github.io/software/repository/github/conda-forge/conda-smithy",
-	"content": "The tool for managing conda-forge feedstocks."
+	"github/TianlaiProject/tlpipe": {
+	"id": "github/TianlaiProject/tlpipe",
+	"title": "github/TianlaiProject/tlpipe",
+	"url": " https://rseng.github.io/software/repository/github/TianlaiProject/tlpipe",
+	"content": "The Tianlai pipeline."
 	},
-	"github/yaml2sbml-dev/yaml2sbml": {
-	"id": "github/yaml2sbml-dev/yaml2sbml",
-	"title": "github/yaml2sbml-dev/yaml2sbml",
-	"url": " https://rseng.github.io/software/repository/github/yaml2sbml-dev/yaml2sbml",
-	"content": "Little tool to convert an ODE model specified in the YAML format to SBML."
+	"github/gymreklab/chips": {
+	"id": "github/gymreklab/chips",
+	"title": "github/gymreklab/chips",
+	"url": " https://rseng.github.io/software/repository/github/gymreklab/chips",
+	"content": "Simulation tool for ChIP- and other -seq experiments"
 	},
-	"github/bbfrederick/stabilitycalc": {
-	"id": "github/bbfrederick/stabilitycalc",
-	"title": "github/bbfrederick/stabilitycalc",
-	"url": " https://rseng.github.io/software/repository/github/bbfrederick/stabilitycalc",
-	"content": "Automatic QC processing for fMRI data"
+	"github/gymreklab/GangSTR": {
+	"id": "github/gymreklab/GangSTR",
+	"title": "github/gymreklab/GangSTR",
+	"url": " https://rseng.github.io/software/repository/github/gymreklab/GangSTR",
+	"content": "A tool for profiling long STRs from short reads"
 	},
-	"github/PapenfussLab/gridss": {
-	"id": "github/PapenfussLab/gridss",
-	"title": "github/PapenfussLab/gridss",
-	"url": " https://rseng.github.io/software/repository/github/PapenfussLab/gridss",
-	"content": "GRIDSS: the Genomic Rearrangement IDentification Software Suite"
+	"github/tongzhouxu/mashpit": {
+	"id": "github/tongzhouxu/mashpit",
+	"title": "github/tongzhouxu/mashpit",
+	"url": " https://rseng.github.io/software/repository/github/tongzhouxu/mashpit",
+	"content": ":pencil: Sketch-based surveillance platform"
 	},
-	"github/RadioAstronomySoftwareGroup/pyradiosky": {
-	"id": "github/RadioAstronomySoftwareGroup/pyradiosky",
-	"title": "github/RadioAstronomySoftwareGroup/pyradiosky",
-	"url": " https://rseng.github.io/software/repository/github/RadioAstronomySoftwareGroup/pyradiosky",
-	"content": "Python objects and interfaces for representing diffuse, extended and compact astrophysical radio sources"
+	"github/potree/PotreeConverter": {
+	"id": "github/potree/PotreeConverter",
+	"title": "github/potree/PotreeConverter",
+	"url": " https://rseng.github.io/software/repository/github/potree/PotreeConverter",
+	"content": "Create multi res point cloud to use with potree"
 	},
-	"github/RadioAstronomySoftwareGroup/pyuvdata": {
-	"id": "github/RadioAstronomySoftwareGroup/pyuvdata",
-	"title": "github/RadioAstronomySoftwareGroup/pyuvdata",
-	"url": " https://rseng.github.io/software/repository/github/RadioAstronomySoftwareGroup/pyuvdata",
-	"content": "A pythonic interface for radio astronomy interferometry data (uvfits, miriad, others)"
+	"github/eisascience/HISTA": {
+	"id": "github/eisascience/HISTA",
+	"title": "github/eisascience/HISTA",
+	"url": " https://rseng.github.io/software/repository/github/eisascience/HISTA",
+	"content": "Human Infertility Single-cell Testis Atlas"
 	},
-	"github/rcsb/mmtf-python": {
-	"id": "github/rcsb/mmtf-python",
-	"title": "github/rcsb/mmtf-python",
-	"url": " https://rseng.github.io/software/repository/github/rcsb/mmtf-python",
-	"content": "The python implementation of the MMTF API, decoder and encoder."
+	"github/ageorgakakis/StructureFunction": {
+	"id": "github/ageorgakakis/StructureFunction",
+	"title": "github/ageorgakakis/StructureFunction",
+	"url": " https://rseng.github.io/software/repository/github/ageorgakakis/StructureFunction",
+	"content": "None"
 	},
-	"github/BiodataAnalysisGroup/UMIc": {
-	"id": "github/BiodataAnalysisGroup/UMIc",
-	"title": "github/BiodataAnalysisGroup/UMIc",
-	"url": " https://rseng.github.io/software/repository/github/BiodataAnalysisGroup/UMIc",
-	"content": "A framework implementing a method for UMI deduplication and reads correction."
+	"github/oncoray/mirp": {
+	"id": "github/oncoray/mirp",
+	"title": "github/oncoray/mirp",
+	"url": " https://rseng.github.io/software/repository/github/oncoray/mirp",
+	"content": "Medical Image Radiomics Processor"
 	},
-	"github/BiodataAnalysisGroup/kmerAnalyzer": {
-	"id": "github/BiodataAnalysisGroup/kmerAnalyzer",
-	"title": "github/BiodataAnalysisGroup/kmerAnalyzer",
-	"url": " https://rseng.github.io/software/repository/github/BiodataAnalysisGroup/kmerAnalyzer",
-	"content": "An alignment-free method capable of processing and counting k-mers in a reasonable time, while evaluating multiple values of the k parameter concurrently."
+	"github/SirSharpest/NarrowEscapeSimulator": {
+	"id": "github/SirSharpest/NarrowEscapeSimulator",
+	"title": "github/SirSharpest/NarrowEscapeSimulator",
+	"url": " https://rseng.github.io/software/repository/github/SirSharpest/NarrowEscapeSimulator",
+	"content": "Developed during my PhD at the John Innes Centre (Norwich Research Park, Doctoral Training Programme). "
 	},
-	"github/BayraktarLab/cell2location": {
-	"id": "github/BayraktarLab/cell2location",
-	"title": "github/BayraktarLab/cell2location",
-	"url": " https://rseng.github.io/software/repository/github/BayraktarLab/cell2location",
-	"content": "Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)"
+	"github/ejmackrell/tidyproteomics-interactive": {
+	"id": "github/ejmackrell/tidyproteomics-interactive",
+	"title": "github/ejmackrell/tidyproteomics-interactive",
+	"url": " https://rseng.github.io/software/repository/github/ejmackrell/tidyproteomics-interactive",
+	"content": "Interactive Shiny application for tidyproteomics"
 	},
-	"github/jkrogager/VoigtFit": {
-	"id": "github/jkrogager/VoigtFit",
-	"title": "github/jkrogager/VoigtFit",
-	"url": " https://rseng.github.io/software/repository/github/jkrogager/VoigtFit",
-	"content": "Python code to fit absorption lines semi-interactively"
+	"github/dellytools/delly": {
+	"id": "github/dellytools/delly",
+	"title": "github/dellytools/delly",
+	"url": " https://rseng.github.io/software/repository/github/dellytools/delly",
+	"content": "DELLY2: Structural variant discovery by integrated paired-end and split-read analysis"
 	},
-	"github/CoLRev-Environment/bib-dedupe": {
-	"id": "github/CoLRev-Environment/bib-dedupe",
-	"title": "github/CoLRev-Environment/bib-dedupe",
-	"url": " https://rseng.github.io/software/repository/github/CoLRev-Environment/bib-dedupe",
-	"content": "None"
+	"github/dellytools/sansa": {
+	"id": "github/dellytools/sansa",
+	"title": "github/dellytools/sansa",
+	"url": " https://rseng.github.io/software/repository/github/dellytools/sansa",
+	"content": "Structural variant annotation"
 	},
-	"github/SchlossLab/mikropml": {
-	"id": "github/SchlossLab/mikropml",
-	"title": "github/SchlossLab/mikropml",
-	"url": " https://rseng.github.io/software/repository/github/SchlossLab/mikropml",
-	"content": "User-Friendly R Package for Supervised Machine Learning Pipelines"
+	"github/simpeg/aurora": {
+	"id": "github/simpeg/aurora",
+	"title": "github/simpeg/aurora",
+	"url": " https://rseng.github.io/software/repository/github/simpeg/aurora",
+	"content": "software for processing natural source electromagnetic data "
 	},
-	"github/dnonatar/Sequoia": {
-	"id": "github/dnonatar/Sequoia",
-	"title": "github/dnonatar/Sequoia",
-	"url": " https://rseng.github.io/software/repository/github/dnonatar/Sequoia",
-	"content": "None"
+	"github/aschafu/PSSH2": {
+	"id": "github/aschafu/PSSH2",
+	"title": "github/aschafu/PSSH2",
+	"url": " https://rseng.github.io/software/repository/github/aschafu/PSSH2",
+	"content": "Scripts for generating pssh2"
 	},
-	"github/elwinter/nnde": {
-	"id": "github/elwinter/nnde",
-	"title": "github/elwinter/nnde",
-	"url": " https://rseng.github.io/software/repository/github/elwinter/nnde",
-	"content": "nnde is a package of Python modules which implement a set of neural networks which solve ordinary and partial differential equations. This code is based on the previous package, nnode."
+	"github/xragua/xraybinaryorbit": {
+	"id": "github/xragua/xraybinaryorbit",
+	"title": "github/xragua/xraybinaryorbit",
+	"url": " https://rseng.github.io/software/repository/github/xragua/xraybinaryorbit",
+	"content": " A Python Package for Analyzing Orbital Modulations in X-ray Binaries"
 	},
-	"github/lmwalkowicz/Cheetah": {
-	"id": "github/lmwalkowicz/Cheetah",
-	"title": "github/lmwalkowicz/Cheetah",
-	"url": " https://rseng.github.io/software/repository/github/lmwalkowicz/Cheetah",
-	"content": "None"
+	"github/JannisHoch/copro": {
+	"id": "github/JannisHoch/copro",
+	"title": "github/JannisHoch/copro",
+	"url": " https://rseng.github.io/software/repository/github/JannisHoch/copro",
+	"content": "(ML) model for computing conflict risk from climate, environmental, and societal drivers."
 	},
-	"github/DrMarc/slab": {
-	"id": "github/DrMarc/slab",
-	"title": "github/DrMarc/slab",
-	"url": " https://rseng.github.io/software/repository/github/DrMarc/slab",
-	"content": "python classes for working with sounds and conducting psychoacoustic  experiments"
+	"github/gotsunami/Youpi": {
+	"id": "github/gotsunami/Youpi",
+	"title": "github/gotsunami/Youpi",
+	"url": " https://rseng.github.io/software/repository/github/gotsunami/Youpi",
+	"content": "A web application providing high level functionalities to perform data reduction on scientific FITS images."
 	},
-	"github/JoschaJ/mockFRBhosts": {
-	"id": "github/JoschaJ/mockFRBhosts",
-	"title": "github/JoschaJ/mockFRBhosts",
-	"url": " https://rseng.github.io/software/repository/github/JoschaJ/mockFRBhosts",
-	"content": "None"
+	"github/dzesmin/TEA": {
+	"id": "github/dzesmin/TEA",
+	"title": "github/dzesmin/TEA",
+	"url": " https://rseng.github.io/software/repository/github/dzesmin/TEA",
+	"content": "Thermochemical Equilibrium Abundances (TEA), a code to calculate gaseous molecular abundances under thermochemical equilibrium conditions"
 	},
-	"github/krober10nd/SeismicMesh": {
-	"id": "github/krober10nd/SeismicMesh",
-	"title": "github/krober10nd/SeismicMesh",
-	"url": " https://rseng.github.io/software/repository/github/krober10nd/SeismicMesh",
-	"content": "2D/3D serial and parallel triangular mesh generation tool for Finite Element Methods."
+	"github/justincfeng/PoMiN": {
+	"id": "github/justincfeng/PoMiN",
+	"title": "github/justincfeng/PoMiN",
+	"url": " https://rseng.github.io/software/repository/github/justincfeng/PoMiN",
+	"content": "PoMiN is a Post-Minkowskian N-Body Solver"
 	},
-	"github/phirling/pyc2ray": {
-	"id": "github/phirling/pyc2ray",
-	"title": "github/phirling/pyc2ray",
-	"url": " https://rseng.github.io/software/repository/github/phirling/pyc2ray",
-	"content": "Python interface to C2Ray, with GPU-acceleration"
+	"github/ypmen/PulsarX": {
+	"id": "github/ypmen/PulsarX",
+	"title": "github/ypmen/PulsarX",
+	"url": " https://rseng.github.io/software/repository/github/ypmen/PulsarX",
+	"content": "Pulsar searching"
 	},
-	"github/andrew-saydjari/CloudCovErr.jl": {
-	"id": "github/andrew-saydjari/CloudCovErr.jl",
-	"title": "github/andrew-saydjari/CloudCovErr.jl",
-	"url": " https://rseng.github.io/software/repository/github/andrew-saydjari/CloudCovErr.jl",
-	"content": "Pipeline for debiasing and improving error bar estimates for photometry on top of structured/filamentary background."
+	"github/cweniger/swordfish": {
+	"id": "github/cweniger/swordfish",
+	"title": "github/cweniger/swordfish",
+	"url": " https://rseng.github.io/software/repository/github/cweniger/swordfish",
+	"content": "A Python tool to study the information yield of counting experiments."
 	},
-	"github/hanyue36/nanoplexer": {
-	"id": "github/hanyue36/nanoplexer",
-	"title": "github/hanyue36/nanoplexer",
-	"url": " https://rseng.github.io/software/repository/github/hanyue36/nanoplexer",
-	"content": "Tool for demultiplexing Nanopore barcode sequence data"
+	"github/Pas-Kapli/mptp": {
+	"id": "github/Pas-Kapli/mptp",
+	"title": "github/Pas-Kapli/mptp",
+	"url": " https://rseng.github.io/software/repository/github/Pas-Kapli/mptp",
+	"content": "mPTP - a tool for single-locus species delimitation"
 	},
-	"github/ben-cassese/squishyplanet": {
-	"id": "github/ben-cassese/squishyplanet",
-	"title": "github/ben-cassese/squishyplanet",
-	"url": " https://rseng.github.io/software/repository/github/ben-cassese/squishyplanet",
-	"content": "Transits of non-spherical exoplanets"
+	"github/esquivas/guacho": {
+	"id": "github/esquivas/guacho",
+	"title": "github/esquivas/guacho",
+	"url": " https://rseng.github.io/software/repository/github/esquivas/guacho",
+	"content": "A 3D uniform mesh parallel HD/MHD code for astrophysics"
 	},
-	"github/andreyshabalin/TwinEQTL": {
-	"id": "github/andreyshabalin/TwinEQTL",
-	"title": "github/andreyshabalin/TwinEQTL",
-	"url": " https://rseng.github.io/software/repository/github/andreyshabalin/TwinEQTL",
-	"content": "TwinMeta: Fast and Powerful Association Analysis for eQTL and GWAS in Twin Studies"
+	"github/bokulich-lab/q2-fondue": {
+	"id": "github/bokulich-lab/q2-fondue",
+	"title": "github/bokulich-lab/q2-fondue",
+	"url": " https://rseng.github.io/software/repository/github/bokulich-lab/q2-fondue",
+	"content": "Functions for reproducibly Obtaining and Normalizing Data re-Used from Elsewhere"
 	},
-	"github/ArkajyotiSaha/RandomForestsGLS": {
-	"id": "github/ArkajyotiSaha/RandomForestsGLS",
-	"title": "github/ArkajyotiSaha/RandomForestsGLS",
-	"url": " https://rseng.github.io/software/repository/github/ArkajyotiSaha/RandomForestsGLS",
+	"github/YaleTHz/nelly": {
+	"id": "github/YaleTHz/nelly",
+	"title": "github/YaleTHz/nelly",
+	"url": " https://rseng.github.io/software/repository/github/YaleTHz/nelly",
+	"content": "Nelly is a package for extracing refractice indices and conductivities from time-domain terahertz spectroscopy data"
+	},
+	"github/sinc-lab/miRe2e": {
+	"id": "github/sinc-lab/miRe2e",
+	"title": "github/sinc-lab/miRe2e",
+	"url": " https://rseng.github.io/software/repository/github/sinc-lab/miRe2e",
 	"content": "None"
 	},
-	"github/kartheikiyer/dense_basis": {
-	"id": "github/kartheikiyer/dense_basis",
-	"title": "github/kartheikiyer/dense_basis",
-	"url": " https://rseng.github.io/software/repository/github/kartheikiyer/dense_basis",
-	"content": "Dense Basis SED fitting"
+	"github/CGAL/cgal": {
+	"id": "github/CGAL/cgal",
+	"title": "github/CGAL/cgal",
+	"url": " https://rseng.github.io/software/repository/github/CGAL/cgal",
+	"content": "The public CGAL repository, see the README below"
 	},
-	"github/soylentdeen/MoogStokes": {
-	"id": "github/soylentdeen/MoogStokes",
-	"title": "github/soylentdeen/MoogStokes",
-	"url": " https://rseng.github.io/software/repository/github/soylentdeen/MoogStokes",
-	"content": "Artisanal Zeeman Radiative Transfer"
+	"github/lutteropp/NetRAX": {
+	"id": "github/lutteropp/NetRAX",
+	"title": "github/lutteropp/NetRAX",
+	"url": " https://rseng.github.io/software/repository/github/lutteropp/NetRAX",
+	"content": "Phylogenetic Network Inference without ILS"
 	},
-	"github/soylentdeen/CounterPoint": {
-	"id": "github/soylentdeen/CounterPoint",
-	"title": "github/soylentdeen/CounterPoint",
-	"url": " https://rseng.github.io/software/repository/github/soylentdeen/CounterPoint",
-	"content": "Python Companion to MoogStokes"
+	"github/christopherlovell/sengi": {
+	"id": "github/christopherlovell/sengi",
+	"title": "github/christopherlovell/sengi",
+	"url": " https://rseng.github.io/software/repository/github/christopherlovell/sengi",
+	"content": "A small, fast, interactive viewer for SPS spectral outputs"
 	},
-	"github/mithun218/GiNaCDE": {
-	"id": "github/mithun218/GiNaCDE",
-	"title": "github/mithun218/GiNaCDE",
-	"url": " https://rseng.github.io/software/repository/github/mithun218/GiNaCDE",
-	"content": "GiNaC Differential Equation Solver"
+	"github/hongwanliu/DarkHistory": {
+	"id": "github/hongwanliu/DarkHistory",
+	"title": "github/hongwanliu/DarkHistory",
+	"url": " https://rseng.github.io/software/repository/github/hongwanliu/DarkHistory",
+	"content": "A code package for calculating modified cosmic ionization and thermal histories with dark matter and other exotic energy injections"
 	},
-	"github/SISPO-developers/sispo": {
-	"id": "github/SISPO-developers/sispo",
-	"title": "github/SISPO-developers/sispo",
-	"url": " https://rseng.github.io/software/repository/github/SISPO-developers/sispo",
-	"content": "Space Imaging Simulator for Proximity Operations (SISPO)"
+	"github/temken/DaMaSCUS-SUN": {
+	"id": "github/temken/DaMaSCUS-SUN",
+	"title": "github/temken/DaMaSCUS-SUN",
+	"url": " https://rseng.github.io/software/repository/github/temken/DaMaSCUS-SUN",
+	"content": "Dark Matter Simulation Code for Underground Scatterings - Sun Edition"
 	},
-	"github/roualdes/bridgestan": {
-	"id": "github/roualdes/bridgestan",
-	"title": "github/roualdes/bridgestan",
-	"url": " https://rseng.github.io/software/repository/github/roualdes/bridgestan",
-	"content": "BridgeStan provides efficient in-memory access through Python, Julia, and R to the methods of a Stan model."
+	"github/temken/obscura": {
+	"id": "github/temken/obscura",
+	"title": "github/temken/obscura",
+	"url": " https://rseng.github.io/software/repository/github/temken/obscura",
+	"content": "A modular C++ tool and library for dark matter direct detection computations for both nuclear and electron recoil experiments."
 	},
-	"github/Stuermer/EchelleSimulator": {
-	"id": "github/Stuermer/EchelleSimulator",
-	"title": "github/Stuermer/EchelleSimulator",
-	"url": " https://rseng.github.io/software/repository/github/Stuermer/EchelleSimulator",
-	"content": "None"
+	"github/temken/DaMaSCUS": {
+	"id": "github/temken/DaMaSCUS",
+	"title": "github/temken/DaMaSCUS",
+	"url": " https://rseng.github.io/software/repository/github/temken/DaMaSCUS",
+	"content": "Dark Matter Simulation Code for Underground Scatterings"
 	},
-	"github/mattpitkin/lintegrate": {
-	"id": "github/mattpitkin/lintegrate",
-	"title": "github/mattpitkin/lintegrate",
-	"url": " https://rseng.github.io/software/repository/github/mattpitkin/lintegrate",
-	"content": "A numerical integration routine that works for the natural logarithm of functions "
+	"github/temken/Dirac_vs_Majorana": {
+	"id": "github/temken/Dirac_vs_Majorana",
+	"title": "github/temken/Dirac_vs_Majorana",
+	"url": " https://rseng.github.io/software/repository/github/temken/Dirac_vs_Majorana",
+	"content": "Statistical discrimination of sub-GeV Majorana and Dirac dark matter at direct detection experiments."
 	},
-	"github/mattpitkin/psrqpy": {
-	"id": "github/mattpitkin/psrqpy",
-	"title": "github/mattpitkin/psrqpy",
-	"url": " https://rseng.github.io/software/repository/github/mattpitkin/psrqpy",
-	"content": "A python module to query the ATNF pulsar catalogue"
+	"github/temken/DaMaSCUS-CRUST": {
+	"id": "github/temken/DaMaSCUS-CRUST",
+	"title": "github/temken/DaMaSCUS-CRUST",
+	"url": " https://rseng.github.io/software/repository/github/temken/DaMaSCUS-CRUST",
+	"content": "Dark Matter Simulation Code for Underground Scatterings - Crust Edition"
 	},
-	"github/fabian-sp/GGLasso": {
-	"id": "github/fabian-sp/GGLasso",
-	"title": "github/fabian-sp/GGLasso",
-	"url": " https://rseng.github.io/software/repository/github/fabian-sp/GGLasso",
-	"content": "Implementations for solving the Group and Fused Graphical Lasso problem"
+	"github/temken/DarkARC": {
+	"id": "github/temken/DarkARC",
+	"title": "github/temken/DarkARC",
+	"url": " https://rseng.github.io/software/repository/github/temken/DarkARC",
+	"content": "Dark Matter-induced Atomic Response Code (DarkARC) - A python tool for the calculation and tabulation of atomic response functions for ionization via dark matter-electron scatterings."
 	},
-	"github/podondra/eidein": {
-	"id": "github/podondra/eidein",
-	"title": "github/podondra/eidein",
-	"url": " https://rseng.github.io/software/repository/github/podondra/eidein",
-	"content": "Interactive tool for dimensionality reduction of spectra and their visualisation"
+	"github/pavanvyn/triple-stability": {
+	"id": "github/pavanvyn/triple-stability",
+	"title": "github/pavanvyn/triple-stability",
+	"url": " https://rseng.github.io/software/repository/github/pavanvyn/triple-stability",
+	"content": "Code to check if a given configuration of a triple-star system is dynamically stable"
 	},
-	"github/podondra/bayesian-sznet": {
-	"id": "github/podondra/bayesian-sznet",
-	"title": "github/podondra/bayesian-sznet",
-	"url": " https://rseng.github.io/software/repository/github/podondra/bayesian-sznet",
-	"content": "Bayesian deep learning to predict redshift with uncertainty"
+	"github/NextGenCMB/lensitbiases": {
+	"id": "github/NextGenCMB/lensitbiases",
+	"title": "github/NextGenCMB/lensitbiases",
+	"url": " https://rseng.github.io/software/repository/github/NextGenCMB/lensitbiases",
+	"content": "rfft-based flat-sky CMB lensing tools"
 	},
-	"github/eggnogdb/eggnog-mapper": {
-	"id": "github/eggnogdb/eggnog-mapper",
-	"title": "github/eggnogdb/eggnog-mapper",
-	"url": " https://rseng.github.io/software/repository/github/eggnogdb/eggnog-mapper",
-	"content": "Fast genome-wide functional annotation through orthology assignment."
+	"github/pierrebarbera/epa-ng": {
+	"id": "github/pierrebarbera/epa-ng",
+	"title": "github/pierrebarbera/epa-ng",
+	"url": " https://rseng.github.io/software/repository/github/pierrebarbera/epa-ng",
+	"content": "Massively parallel phylogenetic placement of genetic sequences"
 	},
-	"github/NielsenBerkeleyLab/sconce": {
-	"id": "github/NielsenBerkeleyLab/sconce",
-	"title": "github/NielsenBerkeleyLab/sconce",
-	"url": " https://rseng.github.io/software/repository/github/NielsenBerkeleyLab/sconce",
-	"content": "None"
+	"github/bbfrederick/stabilitycalc": {
+	"id": "github/bbfrederick/stabilitycalc",
+	"title": "github/bbfrederick/stabilitycalc",
+	"url": " https://rseng.github.io/software/repository/github/bbfrederick/stabilitycalc",
+	"content": "Automatic QC processing for fMRI data"
 	},
-	"github/danielacarrasco/GLACiAR": {
-	"id": "github/danielacarrasco/GLACiAR",
-	"title": "github/danielacarrasco/GLACiAR",
-	"url": " https://rseng.github.io/software/repository/github/danielacarrasco/GLACiAR",
-	"content": "GLACiAR (GaLAxy survey Completeness AlgoRithm) is an open-source python tool for simulations of source recovery and completeness in galaxy surveys."
+	"github/ORNL/tx2": {
+	"id": "github/ORNL/tx2",
+	"title": "github/ORNL/tx2",
+	"url": " https://rseng.github.io/software/repository/github/ORNL/tx2",
+	"content": "Transformer eXplainability and eXploration"
 	},
-	"github/Qepanna/goFlux": {
-	"id": "github/Qepanna/goFlux",
-	"title": "github/Qepanna/goFlux",
-	"url": " https://rseng.github.io/software/repository/github/Qepanna/goFlux",
-	"content": "goFlux: A user-friendly way to calculate GHG fluxes yourself, regardless of user experience"
+	"github/ORNL/Equilipy": {
+	"id": "github/ORNL/Equilipy",
+	"title": "github/ORNL/Equilipy",
+	"url": " https://rseng.github.io/software/repository/github/ORNL/Equilipy",
+	"content": "Open-source python package for multicomponent multiphase equilibrium CALPHAD calculations"
 	},
-	"github/NGSolve/ngsPETSc": {
-	"id": "github/NGSolve/ngsPETSc",
-	"title": "github/NGSolve/ngsPETSc",
-	"url": " https://rseng.github.io/software/repository/github/NGSolve/ngsPETSc",
-	"content": "ngsPETSc Docs"
+	"github/ORNL/curifactory": {
+	"id": "github/ORNL/curifactory",
+	"title": "github/ORNL/curifactory",
+	"url": " https://rseng.github.io/software/repository/github/ORNL/curifactory",
+	"content": "An experiment workflow and organization tool."
 	},
-	"github/kathlandgren/SWAMPE": {
-	"id": "github/kathlandgren/SWAMPE",
-	"title": "github/kathlandgren/SWAMPE",
-	"url": " https://rseng.github.io/software/repository/github/kathlandgren/SWAMPE",
-	"content": "2D spectral-core shallow-water exoplanet atmosphere model"
+	"github/Novartis/torchsurv": {
+	"id": "github/Novartis/torchsurv",
+	"title": "github/Novartis/torchsurv",
+	"url": " https://rseng.github.io/software/repository/github/Novartis/torchsurv",
+	"content": "Deep survival analysis made easy "
 	},
-	"github/Rohit-Kundu/ET-NET_Covid-Detection": {
-	"id": "github/Rohit-Kundu/ET-NET_Covid-Detection",
-	"title": "github/Rohit-Kundu/ET-NET_Covid-Detection",
-	"url": " https://rseng.github.io/software/repository/github/Rohit-Kundu/ET-NET_Covid-Detection",
-	"content": "An Ensemble Transfer Learning Network for COVID-19 detection from lung CT-scan images."
+	"github/rafaeleufrasio/lightning": {
+	"id": "github/rafaeleufrasio/lightning",
+	"title": "github/rafaeleufrasio/lightning",
+	"url": " https://rseng.github.io/software/repository/github/rafaeleufrasio/lightning",
+	"content": "Lightning SED Fitting Package"
 	},
-	"github/aertslab/pySCENIC": {
-	"id": "github/aertslab/pySCENIC",
-	"title": "github/aertslab/pySCENIC",
-	"url": " https://rseng.github.io/software/repository/github/aertslab/pySCENIC",
-	"content": "pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data."
+	"github/FCS-analysis/multipletau": {
+	"id": "github/FCS-analysis/multipletau",
+	"title": "github/FCS-analysis/multipletau",
+	"url": " https://rseng.github.io/software/repository/github/FCS-analysis/multipletau",
+	"content": "python multiple-tau correlation algorithm"
 	},
-	"github/project-asgard/asgard": {
-	"id": "github/project-asgard/asgard",
-	"title": "github/project-asgard/asgard",
-	"url": " https://rseng.github.io/software/repository/github/project-asgard/asgard",
-	"content": "None"
+	"github/BiomedSciAI/fuse-med-ml": {
+	"id": "github/BiomedSciAI/fuse-med-ml",
+	"title": "github/BiomedSciAI/fuse-med-ml",
+	"url": " https://rseng.github.io/software/repository/github/BiomedSciAI/fuse-med-ml",
+	"content": "A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)"
 	},
-	"github/jvc2688/K2-CPM": {
-	"id": "github/jvc2688/K2-CPM",
-	"title": "github/jvc2688/K2-CPM",
-	"url": " https://rseng.github.io/software/repository/github/jvc2688/K2-CPM",
-	"content": "None"
+	"github/dsoave/JLS": {
+	"id": "github/dsoave/JLS",
+	"title": "github/dsoave/JLS",
+	"url": " https://rseng.github.io/software/repository/github/dsoave/JLS",
+	"content": "JLS"
 	},
-	"github/mcfrith/tandem-genotypes": {
-	"id": "github/mcfrith/tandem-genotypes",
-	"title": "github/mcfrith/tandem-genotypes",
-	"url": " https://rseng.github.io/software/repository/github/mcfrith/tandem-genotypes",
-	"content": "compare lengths of duplications in DNA sequences"
+	"github/InsightSoftwareConsortium/ITK": {
+	"id": "github/InsightSoftwareConsortium/ITK",
+	"title": "github/InsightSoftwareConsortium/ITK",
+	"url": " https://rseng.github.io/software/repository/github/InsightSoftwareConsortium/ITK",
+	"content": "Insight Toolkit (ITK) -- Official Repository"
 	},
-	"github/mcfrith/dnarrange": {
-	"id": "github/mcfrith/dnarrange",
-	"title": "github/mcfrith/dnarrange",
-	"url": " https://rseng.github.io/software/repository/github/mcfrith/dnarrange",
-	"content": "Method to find rearrangements in long DNA reads relative to a genome seq"
+	"github/yanzhanglab/Graph2GO": {
+	"id": "github/yanzhanglab/Graph2GO",
+	"title": "github/yanzhanglab/Graph2GO",
+	"url": " https://rseng.github.io/software/repository/github/yanzhanglab/Graph2GO",
+	"content": "Graph-based representation learning method for protein function prediction"
 	},
-	"github/esperlman/JetCurry": {
-	"id": "github/esperlman/JetCurry",
-	"title": "github/esperlman/JetCurry",
-	"url": " https://rseng.github.io/software/repository/github/esperlman/JetCurry",
-	"content": "None"
+	"github/VU-IVM/VineCopulas": {
+	"id": "github/VU-IVM/VineCopulas",
+	"title": "github/VU-IVM/VineCopulas",
+	"url": " https://rseng.github.io/software/repository/github/VU-IVM/VineCopulas",
+	"content": "A pure python implementation for vine copulas"
 	},
-	"github/NicOudart/PyBWE": {
-	"id": "github/NicOudart/PyBWE",
-	"title": "github/NicOudart/PyBWE",
-	"url": " https://rseng.github.io/software/repository/github/NicOudart/PyBWE",
-	"content": "Python library for radar Bandwidth Extrapolation (BWE)"
+	"github/BjoernBiltzinger/pyspi": {
+	"id": "github/BjoernBiltzinger/pyspi",
+	"title": "github/BjoernBiltzinger/pyspi",
+	"url": " https://rseng.github.io/software/repository/github/BjoernBiltzinger/pyspi",
+	"content": "Pure python tools for interfacing with INTEGRAL SPI data. It also provides a 3ML plugin for performing full forward folding spectral analysis of GRBs. The documentation with a few examples is available at https://pyspi.readthedocs.io/."
 	},
-	"github/WilliamLwj/PyXAB": {
-	"id": "github/WilliamLwj/PyXAB",
-	"title": "github/WilliamLwj/PyXAB",
-	"url": " https://rseng.github.io/software/repository/github/WilliamLwj/PyXAB",
-	"content": "PyXAB - A Python Library for X-Armed Bandit and Online Blackbox Optimization Algorithms"
+	"github/pedronachtigall/ToxCodAn-Genome": {
+	"id": "github/pedronachtigall/ToxCodAn-Genome",
+	"title": "github/pedronachtigall/ToxCodAn-Genome",
+	"url": " https://rseng.github.io/software/repository/github/pedronachtigall/ToxCodAn-Genome",
+	"content": "Toxin genes annotation in genome assembly"
 	},
-	"github/jcombs1/blasr": {
-	"id": "github/jcombs1/blasr",
-	"title": "github/jcombs1/blasr",
-	"url": " https://rseng.github.io/software/repository/github/jcombs1/blasr",
-	"content": "BLASR: The PacBio® long read aligner"
+	"github/redcap-tools/PyCap": {
+	"id": "github/redcap-tools/PyCap",
+	"title": "github/redcap-tools/PyCap",
+	"url": " https://rseng.github.io/software/repository/github/redcap-tools/PyCap",
+	"content": "REDCap in Python"
 	},
-	"github/twopin/CAMP": {
-	"id": "github/twopin/CAMP",
-	"title": "github/twopin/CAMP",
-	"url": " https://rseng.github.io/software/repository/github/twopin/CAMP",
-	"content": "predicting peptide-protein interactions"
+	"github/cjbarrie/academictwitteR": {
+	"id": "github/cjbarrie/academictwitteR",
+	"title": "github/cjbarrie/academictwitteR",
+	"url": " https://rseng.github.io/software/repository/github/cjbarrie/academictwitteR",
+	"content": "Repo for academictwitteR package to query the Twitter Academic Research Product Track v2 API endpoint."
 	},
-	"github/nabeelre/NIMBLE": {
-	"id": "github/nabeelre/NIMBLE",
-	"title": "github/nabeelre/NIMBLE",
-	"url": " https://rseng.github.io/software/repository/github/nabeelre/NIMBLE",
-	"content": "A spherical Jeans modeling tool to compute a system&#39;s cumulative mass distribution from (observationally biased) 6D phase space coordinates"
+	"github/cbio-astar-tools/GeneCloudOmics": {
+	"id": "github/cbio-astar-tools/GeneCloudOmics",
+	"title": "github/cbio-astar-tools/GeneCloudOmics",
+	"url": " https://rseng.github.io/software/repository/github/cbio-astar-tools/GeneCloudOmics",
+	"content": "A Biostatistical tool for Transcriptomics Analysis"
 	},
-	"github/nabeelre/BTSbot": {
-	"id": "github/nabeelre/BTSbot",
-	"title": "github/nabeelre/BTSbot",
-	"url": " https://rseng.github.io/software/repository/github/nabeelre/BTSbot",
-	"content": "Automated identification of supernovae with multi-modal deep learning"
+	"github/NIFTI-Imaging/nifti_clib": {
+	"id": "github/NIFTI-Imaging/nifti_clib",
+	"title": "github/NIFTI-Imaging/nifti_clib",
+	"url": " https://rseng.github.io/software/repository/github/NIFTI-Imaging/nifti_clib",
+	"content": "C libraries for NIFTI support"
 	},
-	"github/minaskar/zeus": {
-	"id": "github/minaskar/zeus",
-	"title": "github/minaskar/zeus",
-	"url": " https://rseng.github.io/software/repository/github/minaskar/zeus",
-	"content": "⚡️ zeus: Lightning Fast MCMC ⚡️"
+	"github/xmuyulab/DreamDIA-XMBD": {
+	"id": "github/xmuyulab/DreamDIA-XMBD",
+	"title": "github/xmuyulab/DreamDIA-XMBD",
+	"url": " https://rseng.github.io/software/repository/github/xmuyulab/DreamDIA-XMBD",
+	"content": "Software for data-independent acquisition (DIA) proteomic data processing with deep representation features."
 	},
-	"github/minaskar/pocomc": {
-	"id": "github/minaskar/pocomc",
-	"title": "github/minaskar/pocomc",
-	"url": " https://rseng.github.io/software/repository/github/minaskar/pocomc",
-	"content": "pocoMC: A Python implementation of Preconditioned Monte Carlo for accelerated Bayesian Computation"
+	"github/catboost/catboost": {
+	"id": "github/catboost/catboost",
+	"title": "github/catboost/catboost",
+	"url": " https://rseng.github.io/software/repository/github/catboost/catboost",
+	"content": "A fast, scalable, high performance Gradient Boosting on Decision Trees library, used for ranking, classification, regression and other machine learning tasks for Python, R, Java, C++. Supports computation on CPU and GPU."
 	},
-	"github/minaskar/hankl": {
-	"id": "github/minaskar/hankl",
-	"title": "github/minaskar/hankl",
-	"url": " https://rseng.github.io/software/repository/github/minaskar/hankl",
-	"content": "hankl is a lightweight Python implementation of the FFTLog algorithm for Cosmology"
+	"github/ocxtal/minialign": {
+	"id": "github/ocxtal/minialign",
+	"title": "github/ocxtal/minialign",
+	"url": " https://rseng.github.io/software/repository/github/ocxtal/minialign",
+	"content": "[IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long reads"
 	},
-	"github/GenomePathogenAnalysisService/read-it-and-keep": {
-	"id": "github/GenomePathogenAnalysisService/read-it-and-keep",
-	"title": "github/GenomePathogenAnalysisService/read-it-and-keep",
-	"url": " https://rseng.github.io/software/repository/github/GenomePathogenAnalysisService/read-it-and-keep",
-	"content": "Read contamination removal"
+	"github/Peppags/CNN-SVR": {
+	"id": "github/Peppags/CNN-SVR",
+	"title": "github/Peppags/CNN-SVR",
+	"url": " https://rseng.github.io/software/repository/github/Peppags/CNN-SVR",
+	"content": "CNN-SVR: A deep learning approach for predicting CRISPR/Cas9 guide RNA on-target activity"
 	},
-	"github/nla-group/fABBA": {
-	"id": "github/nla-group/fABBA",
-	"title": "github/nla-group/fABBA",
-	"url": " https://rseng.github.io/software/repository/github/nla-group/fABBA",
-	"content": "A Python library for the fast symbolic approximation of time series"
+	"github/Mulan-94/smops": {
+	"id": "github/Mulan-94/smops",
+	"title": "github/Mulan-94/smops",
+	"url": " https://rseng.github.io/software/repository/github/Mulan-94/smops",
+	"content": "Interpolate FITS model images over higher frequency intervals"
 	},
-	"github/anderslogg/geco": {
-	"id": "github/anderslogg/geco",
-	"title": "github/anderslogg/geco",
-	"url": " https://rseng.github.io/software/repository/github/anderslogg/geco",
-	"content": "A collection of solvers for the Einstein-Vlasov equations"
+	"github/snakemake/snakemake": {
+	"id": "github/snakemake/snakemake",
+	"title": "github/snakemake/snakemake",
+	"url": " https://rseng.github.io/software/repository/github/snakemake/snakemake",
+	"content": "This is the development home of the workflow management system Snakemake. For general information, see"
 	},
-	"github/Schulik/aiolos": {
-	"id": "github/Schulik/aiolos",
-	"title": "github/Schulik/aiolos",
-	"url": " https://rseng.github.io/software/repository/github/Schulik/aiolos",
-	"content": "1-D hydrodynamics code for planetary atmosphere accretion and escape simulations"
+	"github/Ruiz-HCI-Lab/ggMOB": {
+	"id": "github/Ruiz-HCI-Lab/ggMOB",
+	"title": "github/Ruiz-HCI-Lab/ggMOB",
+	"url": " https://rseng.github.io/software/repository/github/Ruiz-HCI-Lab/ggMOB",
+	"content": "None"
 	},
-	"github/Beuth-Erdelt/DBMS-Benchmarker": {
-	"id": "github/Beuth-Erdelt/DBMS-Benchmarker",
-	"title": "github/Beuth-Erdelt/DBMS-Benchmarker",
-	"url": " https://rseng.github.io/software/repository/github/Beuth-Erdelt/DBMS-Benchmarker",
-	"content": "DBMS-Benchmarker is a Python-based application-level blackbox benchmark tool for Database Management Systems (DBMS). It connects to a given list of DBMS (via JDBC) and runs a given list of parametrized and randomized (SQL) benchmark queries. Evaluations are available via a Python interface and on an interactive multi-dimensional dashboard."
+	"github/benhid/Sequoya": {
+	"id": "github/benhid/Sequoya",
+	"title": "github/benhid/Sequoya",
+	"url": " https://rseng.github.io/software/repository/github/benhid/Sequoya",
+	"content": "Solving Multiple Sequence Alignment (MSA) problems with multi-objective metaheuristics"
 	},
-	"github/annayqho/TheCannon": {
-	"id": "github/annayqho/TheCannon",
-	"title": "github/annayqho/TheCannon",
-	"url": " https://rseng.github.io/software/repository/github/annayqho/TheCannon",
-	"content": "a data-driven method for determining stellar parameters and abundances from stellar spectra"
+	"github/sachsmc/cosinor": {
+	"id": "github/sachsmc/cosinor",
+	"title": "github/sachsmc/cosinor",
+	"url": " https://rseng.github.io/software/repository/github/sachsmc/cosinor",
+	"content": "R package for estimation and prediction of the cosinor model for periodic data"
 	},
-	"github/HinodeXRT/xrtpy": {
-	"id": "github/HinodeXRT/xrtpy",
-	"title": "github/HinodeXRT/xrtpy",
-	"url": " https://rseng.github.io/software/repository/github/HinodeXRT/xrtpy",
+	"github/flosalbizziae/kataegis": {
+	"id": "github/flosalbizziae/kataegis",
+	"title": "github/flosalbizziae/kataegis",
+	"url": " https://rseng.github.io/software/repository/github/flosalbizziae/kataegis",
 	"content": "None"
 	},
-	"github/PyPSA/linopy": {
-	"id": "github/PyPSA/linopy",
-	"title": "github/PyPSA/linopy",
-	"url": " https://rseng.github.io/software/repository/github/PyPSA/linopy",
-	"content": "Linear optimization with N-D labeled arrays in Python"
+	"github/AprilYuge/ResPAN": {
+	"id": "github/AprilYuge/ResPAN",
+	"title": "github/AprilYuge/ResPAN",
+	"url": " https://rseng.github.io/software/repository/github/AprilYuge/ResPAN",
+	"content": "a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction"
 	},
-	"github/PyPSA/atlite": {
-	"id": "github/PyPSA/atlite",
-	"title": "github/PyPSA/atlite",
-	"url": " https://rseng.github.io/software/repository/github/PyPSA/atlite",
-	"content": "Atlite: Light-weight version of Aarhus RE Atlas for converting weather data to power systems data"
+	"github/tanner-trickle/EXCEED-DM": {
+	"id": "github/tanner-trickle/EXCEED-DM",
+	"title": "github/tanner-trickle/EXCEED-DM",
+	"url": " https://rseng.github.io/software/repository/github/tanner-trickle/EXCEED-DM",
+	"content": "EXCEED-DM: EXtended Calculation of Electronic Excitations for Direct detection of Dark Matter"
 	},
-	"github/PopGenClustering/Clumppling": {
-	"id": "github/PopGenClustering/Clumppling",
-	"title": "github/PopGenClustering/Clumppling",
-	"url": " https://rseng.github.io/software/repository/github/PopGenClustering/Clumppling",
-	"content": "None"
+	"github/tbronzwaer/raptor": {
+	"id": "github/tbronzwaer/raptor",
+	"title": "github/tbronzwaer/raptor",
+	"url": " https://rseng.github.io/software/repository/github/tbronzwaer/raptor",
+	"content": "Public version of the RAPTOR code for radiative transfer in arbitrary spacetimes. See README file for instructions and contact details."
 	},
-	"github/sheryl-ai/MetaPred": {
-	"id": "github/sheryl-ai/MetaPred",
-	"title": "github/sheryl-ai/MetaPred",
-	"url": " https://rseng.github.io/software/repository/github/sheryl-ai/MetaPred",
-	"content": "MetaPred: Meta-Learning for Clinical Risk Prediction with Limited Patient Electronic Health Records (KDD 2019)"
+	"github/takafumi291/ESSENCE": {
+	"id": "github/takafumi291/ESSENCE",
+	"title": "github/takafumi291/ESSENCE",
+	"url": " https://rseng.github.io/software/repository/github/takafumi291/ESSENCE",
+	"content": "A python package for evaluating the statistical significance of the image analysis and signal detection under correlated noise in the interferometric images (e.g., ALMA, NOEMA)."
 	},
-	"github/MJCliffe/PASCal": {
-	"id": "github/MJCliffe/PASCal",
-	"title": "github/MJCliffe/PASCal",
-	"url": " https://rseng.github.io/software/repository/github/MJCliffe/PASCal",
-	"content": "Codebase for PASCal strain calculator"
+	"github/creanero/locus": {
+	"id": "github/creanero/locus",
+	"title": "github/creanero/locus",
+	"url": " https://rseng.github.io/software/repository/github/creanero/locus",
+	"content": "code and script for Locus Algorithm"
 	},
-	"github/ksahlin/strobealign": {
-	"id": "github/ksahlin/strobealign",
-	"title": "github/ksahlin/strobealign",
-	"url": " https://rseng.github.io/software/repository/github/ksahlin/strobealign",
-	"content": "Aligns short reads using dynamic seed size with strobemers"
+	"github/lxvm/AutoBZ.jl": {
+	"id": "github/lxvm/AutoBZ.jl",
+	"title": "github/lxvm/AutoBZ.jl",
+	"url": " https://rseng.github.io/software/repository/github/lxvm/AutoBZ.jl",
+	"content": "Automatic and adaptive BZ integration for electronic properties"
 	},
-	"github/yjx1217/RecombineX": {
-	"id": "github/yjx1217/RecombineX",
-	"title": "github/yjx1217/RecombineX",
-	"url": " https://rseng.github.io/software/repository/github/yjx1217/RecombineX",
-	"content": "A computational framework for tetrad-based genotyping &amp; recombination landscape analysis"
+	"github/emossoux/LIFELINE": {
+	"id": "github/emossoux/LIFELINE",
+	"title": "github/emossoux/LIFELINE",
+	"url": " https://rseng.github.io/software/repository/github/emossoux/LIFELINE",
+	"content": "Program for the computation of line profile in colliding wind binaries"
 	},
-	"github/ropensci-org/pkgreviewr": {
-	"id": "github/ropensci-org/pkgreviewr",
-	"title": "github/ropensci-org/pkgreviewr",
-	"url": " https://rseng.github.io/software/repository/github/ropensci-org/pkgreviewr",
-	"content": "R package to facilitate rOpenSci package reviews."
+	"github/stevengj/nlopt": {
+	"id": "github/stevengj/nlopt",
+	"title": "github/stevengj/nlopt",
+	"url": " https://rseng.github.io/software/repository/github/stevengj/nlopt",
+	"content": "library for nonlinear optimization, wrapping many algorithms for global and local, constrained or unconstrained, optimization"
 	},
-	"github/ropensci-org/roblog": {
-	"id": "github/ropensci-org/roblog",
-	"title": "github/ropensci-org/roblog",
-	"url": " https://rseng.github.io/software/repository/github/ropensci-org/roblog",
-	"content": "rOpenSci&#39;s blog guidance"
+	"github/dawolfgang/MRrelation": {
+	"id": "github/dawolfgang/MRrelation",
+	"title": "github/dawolfgang/MRrelation",
+	"url": " https://rseng.github.io/software/repository/github/dawolfgang/MRrelation",
+	"content": "None"
 	},
-	"github/ropensci-org/rotemplate": {
-	"id": "github/ropensci-org/rotemplate",
-	"title": "github/ropensci-org/rotemplate",
-	"url": " https://rseng.github.io/software/repository/github/ropensci-org/rotemplate",
-	"content": "pkgdown template for rOpenSci packages :nail_care: :sparkles:"
+	"github/taehoryu/TDEmass": {
+	"id": "github/taehoryu/TDEmass",
+	"title": "github/taehoryu/TDEmass",
+	"url": " https://rseng.github.io/software/repository/github/taehoryu/TDEmass",
+	"content": "None"
 	},
-	"github/CadenArmstrong/simuTrans": {
-	"id": "github/CadenArmstrong/simuTrans",
-	"title": "github/CadenArmstrong/simuTrans",
-	"url": " https://rseng.github.io/software/repository/github/CadenArmstrong/simuTrans",
-	"content": "Exoplanet transit simulator."
+	"github/JCGoran/coffe": {
+	"id": "github/JCGoran/coffe",
+	"title": "github/JCGoran/coffe",
+	"url": " https://rseng.github.io/software/repository/github/JCGoran/coffe",
+	"content": "The public repository for the code COFFE"
+	},
+	"github/sPaMFouR/RedPipe": {
+	"id": "github/sPaMFouR/RedPipe",
+	"title": "github/sPaMFouR/RedPipe",
+	"url": " https://rseng.github.io/software/repository/github/sPaMFouR/RedPipe",
+	"content": "Python Scripts for Data Reduction and Analysis"
 	},
-	"github/tekpinar/correlationplus": {
-	"id": "github/tekpinar/correlationplus",
-	"title": "github/tekpinar/correlationplus",
-	"url": " https://rseng.github.io/software/repository/github/tekpinar/correlationplus",
-	"content": "A Python package to calculate, visualize and analyze dynamical correlations of proteins."
+	"github/ShaunFell/GRBoondi": {
+	"id": "github/ShaunFell/GRBoondi",
+	"title": "github/ShaunFell/GRBoondi",
+	"url": " https://rseng.github.io/software/repository/github/ShaunFell/GRBoondi",
+	"content": "An AMR-based open source code to evolve generalized Proca fields on arbitrary fixed backgrounds"
 	},
-	"github/zdelrosario/py_grama": {
-	"id": "github/zdelrosario/py_grama",
-	"title": "github/zdelrosario/py_grama",
-	"url": " https://rseng.github.io/software/repository/github/zdelrosario/py_grama",
-	"content": "Implementation of a grammar of model analysis"
+	"github/enveda/RPath": {
+	"id": "github/enveda/RPath",
+	"title": "github/enveda/RPath",
+	"url": " https://rseng.github.io/software/repository/github/enveda/RPath",
+	"content": "Source code and data for &#34;Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures for drug discovery&#34;"
 	},
-	"github/igmhub/baofit": {
-	"id": "github/igmhub/baofit",
-	"title": "github/igmhub/baofit",
-	"url": " https://rseng.github.io/software/repository/github/igmhub/baofit",
-	"content": "Fits cosmological data to measure baryon acoustic oscillations."
+	"github/v-morello/iqrm": {
+	"id": "github/v-morello/iqrm",
+	"title": "github/v-morello/iqrm",
+	"url": " https://rseng.github.io/software/repository/github/v-morello/iqrm",
+	"content": "A minimal implementation of the IQRM interference flagging algorithm for radio pulsar and transient searches"
 	},
-	"github/igmhub/ForestFlow": {
-	"id": "github/igmhub/ForestFlow",
-	"title": "github/igmhub/ForestFlow",
-	"url": " https://rseng.github.io/software/repository/github/igmhub/ForestFlow",
-	"content": "This code is a neural network emulator for the 3D flux power spectrum of the Lyman-alpha forest"
+	"github/v-morello/clfd": {
+	"id": "github/v-morello/clfd",
+	"title": "github/v-morello/clfd",
+	"url": " https://rseng.github.io/software/repository/github/v-morello/clfd",
+	"content": " Smart RFI removal algorithms to be used on folded pulsar search and timing data"
 	},
-	"github/igmhub/picca": {
-	"id": "github/igmhub/picca",
-	"title": "github/igmhub/picca",
-	"url": " https://rseng.github.io/software/repository/github/igmhub/picca",
-	"content": "set of tools for continuum fitting, correlation function calculation, cosmological fits..."
+	"github/v-morello/riptide": {
+	"id": "github/v-morello/riptide",
+	"title": "github/v-morello/riptide",
+	"url": " https://rseng.github.io/software/repository/github/v-morello/riptide",
+	"content": "Pulsar searching with the Fast Folding Algorithm (FFA)"
 	},
-	"github/igmhub/LyaCoLoRe": {
-	"id": "github/igmhub/LyaCoLoRe",
-	"title": "github/igmhub/LyaCoLoRe",
-	"url": " https://rseng.github.io/software/repository/github/igmhub/LyaCoLoRe",
-	"content": "Code development to use CoLoRe simulations for generating simulated Lyman alpha forest spectra"
+	"github/shergreen/SatGen": {
+	"id": "github/shergreen/SatGen",
+	"title": "github/shergreen/SatGen",
+	"url": " https://rseng.github.io/software/repository/github/shergreen/SatGen",
+	"content": "A semi-analytical satellite galaxy and dark matter halo generator"
 	},
-	"github/sbebo/joypy": {
-	"id": "github/sbebo/joypy",
-	"title": "github/sbebo/joypy",
-	"url": " https://rseng.github.io/software/repository/github/sbebo/joypy",
-	"content": "Joyplots in Python with matplotlib &amp; pandas :chart_with_upwards_trend:"
+	"github/octopus-sensing/octopus-sensing": {
+	"id": "github/octopus-sensing/octopus-sensing",
+	"title": "github/octopus-sensing/octopus-sensing",
+	"url": " https://rseng.github.io/software/repository/github/octopus-sensing/octopus-sensing",
+	"content": "None"
 	},
-	"github/yogi-tud/space_gpu": {
-	"id": "github/yogi-tud/space_gpu",
-	"title": "github/yogi-tud/space_gpu",
-	"url": " https://rseng.github.io/software/repository/github/yogi-tud/space_gpu",
+	"github/astrogilda/mirkwood": {
+	"id": "github/astrogilda/mirkwood",
+	"title": "github/astrogilda/mirkwood",
+	"url": " https://rseng.github.io/software/repository/github/astrogilda/mirkwood",
 	"content": "None"
 	},
-	"github/BIC-MNI/libminc": {
-	"id": "github/BIC-MNI/libminc",
-	"title": "github/BIC-MNI/libminc",
-	"url": " https://rseng.github.io/software/repository/github/BIC-MNI/libminc",
-	"content": "libminc is the core library and API of the MINC toolkit"
+	"github/bccp/nbodykit": {
+	"id": "github/bccp/nbodykit",
+	"title": "github/bccp/nbodykit",
+	"url": " https://rseng.github.io/software/repository/github/bccp/nbodykit",
+	"content": "Analysis kit for large-scale structure datasets, the massively parallel way"
 	},
-	"github/joshjchayes/TransitFit": {
-	"id": "github/joshjchayes/TransitFit",
-	"title": "github/joshjchayes/TransitFit",
-	"url": " https://rseng.github.io/software/repository/github/joshjchayes/TransitFit",
-	"content": "Transit light curve fitting using nested sampling"
+	"github/wdecoster/nanostat": {
+	"id": "github/wdecoster/nanostat",
+	"title": "github/wdecoster/nanostat",
+	"url": " https://rseng.github.io/software/repository/github/wdecoster/nanostat",
+	"content": "Create statistic summary of an Oxford Nanopore read dataset"
 	},
-	"github/nyusngroup/pyMCZ": {
-	"id": "github/nyusngroup/pyMCZ",
-	"title": "github/nyusngroup/pyMCZ",
-	"url": " https://rseng.github.io/software/repository/github/nyusngroup/pyMCZ",
-	"content": "montecarlo sampling method to calculate metalicity from flux data"
+	"github/wdecoster/nanoQC": {
+	"id": "github/wdecoster/nanoQC",
+	"title": "github/wdecoster/nanoQC",
+	"url": " https://rseng.github.io/software/repository/github/wdecoster/nanoQC",
+	"content": "Quality control tools for nanopore sequencing data"
 	},
-	"github/jdswinbank/Comet": {
-	"id": "github/jdswinbank/Comet",
-	"title": "github/jdswinbank/Comet",
-	"url": " https://rseng.github.io/software/repository/github/jdswinbank/Comet",
-	"content": "A complete VOEvent transport system"
+	"github/wdecoster/nanoget": {
+	"id": "github/wdecoster/nanoget",
+	"title": "github/wdecoster/nanoget",
+	"url": " https://rseng.github.io/software/repository/github/wdecoster/nanoget",
+	"content": "Functions to extract information from Oxford Nanopore sequencing data and alignments"
 	},
-	"github/pachterlab/kallisto": {
-	"id": "github/pachterlab/kallisto",
-	"title": "github/pachterlab/kallisto",
-	"url": " https://rseng.github.io/software/repository/github/pachterlab/kallisto",
-	"content": "Near-optimal RNA-Seq quantification"
+	"github/wdecoster/nano-snakemake": {
+	"id": "github/wdecoster/nano-snakemake",
+	"title": "github/wdecoster/nano-snakemake",
+	"url": " https://rseng.github.io/software/repository/github/wdecoster/nano-snakemake",
+	"content": "A snakemake pipeline for SV analysis from nanopore genome sequencing"
 	},
-	"github/CTU-Bern/presize": {
-	"id": "github/CTU-Bern/presize",
-	"title": "github/CTU-Bern/presize",
-	"url": " https://rseng.github.io/software/repository/github/CTU-Bern/presize",
-	"content": "Precision Based Sample Size Calculation"
+	"github/wdecoster/nanopack": {
+	"id": "github/wdecoster/nanopack",
+	"title": "github/wdecoster/nanopack",
+	"url": " https://rseng.github.io/software/repository/github/wdecoster/nanopack",
+	"content": "Easily install all nanopack scripts together"
 	},
-	"github/IMB-Computational-Genomics-Lab/scGPS": {
-	"id": "github/IMB-Computational-Genomics-Lab/scGPS",
-	"title": "github/IMB-Computational-Genomics-Lab/scGPS",
-	"url": " https://rseng.github.io/software/repository/github/IMB-Computational-Genomics-Lab/scGPS",
-	"content": "A framework for clustering (CORE) and estimation of relationship between pairs of clusters (scGPS) from single cell data "
+	"github/wdecoster/nanocomp": {
+	"id": "github/wdecoster/nanocomp",
+	"title": "github/wdecoster/nanocomp",
+	"url": " https://rseng.github.io/software/repository/github/wdecoster/nanocomp",
+	"content": "Comparison of multiple long read datasets"
 	},
-	"github/CatarinaMMarques/FisherCosmology": {
-	"id": "github/CatarinaMMarques/FisherCosmology",
-	"title": "github/CatarinaMMarques/FisherCosmology",
-	"url": " https://rseng.github.io/software/repository/github/CatarinaMMarques/FisherCosmology",
-	"content": "Forecasting Code for Redshift Drift and Alpha Measurements"
+	"github/wdecoster/chopper": {
+	"id": "github/wdecoster/chopper",
+	"title": "github/wdecoster/chopper",
+	"url": " https://rseng.github.io/software/repository/github/wdecoster/chopper",
+	"content": "Rust implementation of NanoFilt+NanoLyse, both originally written in Python. This tool, intended for long read sequencing such as PacBio or ONT, filters and trims a fastq file."
 	},
-	"github/pydata/xarray": {
-	"id": "github/pydata/xarray",
-	"title": "github/pydata/xarray",
-	"url": " https://rseng.github.io/software/repository/github/pydata/xarray",
-	"content": "N-D labeled arrays and datasets in Python"
+	"github/wdecoster/NanoPlot": {
+	"id": "github/wdecoster/NanoPlot",
+	"title": "github/wdecoster/NanoPlot",
+	"url": " https://rseng.github.io/software/repository/github/wdecoster/NanoPlot",
+	"content": "Plotting scripts for long read sequencing data"
 	},
-	"github/basehc/IPEV": {
-	"id": "github/basehc/IPEV",
-	"title": "github/basehc/IPEV",
-	"url": " https://rseng.github.io/software/repository/github/basehc/IPEV",
-	"content": "Software tool to identify prokaryotic and eukaryotic virus-derived sequences in virome using deep learning. Used to calculate a set of scores that reflect the probability that input sequence fragments are prokaryotic and eukaryotic viral sequences."
+	"github/wdecoster/NanoComp": {
+	"id": "github/wdecoster/NanoComp",
+	"title": "github/wdecoster/NanoComp",
+	"url": " https://rseng.github.io/software/repository/github/wdecoster/NanoComp",
+	"content": "Comparison of multiple long read datasets"
 	},
-	"github/lzkelley/kalepy": {
-	"id": "github/lzkelley/kalepy",
-	"title": "github/lzkelley/kalepy",
-	"url": " https://rseng.github.io/software/repository/github/lzkelley/kalepy",
-	"content": "Kernel Density Estimation and (re)sampling"
+	"github/wdecoster/nanolyse": {
+	"id": "github/wdecoster/nanolyse",
+	"title": "github/wdecoster/nanolyse",
+	"url": " https://rseng.github.io/software/repository/github/wdecoster/nanolyse",
+	"content": "Remove lambda phage reads from a fastq file"
 	},
-	"github/BoPeng/simuPOP": {
-	"id": "github/BoPeng/simuPOP",
-	"title": "github/BoPeng/simuPOP",
-	"url": " https://rseng.github.io/software/repository/github/BoPeng/simuPOP",
-	"content": "A general-purpose forward-time population genetics simulation environment."
+	"github/wdecoster/nanomath": {
+	"id": "github/wdecoster/nanomath",
+	"title": "github/wdecoster/nanomath",
+	"url": " https://rseng.github.io/software/repository/github/wdecoster/nanomath",
+	"content": "A few simple math function for other Oxford Nanopore processing scripts"
 	},
-	"github/SSAGESproject/SSAGES": {
-	"id": "github/SSAGESproject/SSAGES",
-	"title": "github/SSAGESproject/SSAGES",
-	"url": " https://rseng.github.io/software/repository/github/SSAGESproject/SSAGES",
-	"content": "Software Suite for Advanced General Ensemble Simulations"
+	"github/wdecoster/nanofilt": {
+	"id": "github/wdecoster/nanofilt",
+	"title": "github/wdecoster/nanofilt",
+	"url": " https://rseng.github.io/software/repository/github/wdecoster/nanofilt",
+	"content": "Filtering and trimming of long read sequencing data"
 	},
-	"github/lanzen/ampliconnoise": {
-	"id": "github/lanzen/ampliconnoise",
-	"title": "github/lanzen/ampliconnoise",
-	"url": " https://rseng.github.io/software/repository/github/lanzen/ampliconnoise",
-	"content": "Automatically exported from code.google.com/p/ampliconnoise"
+	"github/c-white/blacklight": {
+	"id": "github/c-white/blacklight",
+	"title": "github/c-white/blacklight",
+	"url": " https://rseng.github.io/software/repository/github/c-white/blacklight",
+	"content": "GR ray tracing code for post-processing Athena++ simulations"
 	},
-	"github/dipto4/falcon_dm": {
-	"id": "github/dipto4/falcon_dm",
-	"title": "github/dipto4/falcon_dm",
-	"url": " https://rseng.github.io/software/repository/github/dipto4/falcon_dm",
-	"content": "Codebase for Falcon-DM: N-body code specifically tuned for simulating intermediate mass ratio inspirals in DM spikes. "
+	"github/WGLab/LongReadSum": {
+	"id": "github/WGLab/LongReadSum",
+	"title": "github/WGLab/LongReadSum",
+	"url": " https://rseng.github.io/software/repository/github/WGLab/LongReadSum",
+	"content": "LongReadSum supports FASTA, FASTQ, BAM, FAST5, and sequencing_summary.txt file formats for quick generation of QC data in HTML and text format."
 	},
-	"github/rychallener/ThERESA": {
-	"id": "github/rychallener/ThERESA",
-	"title": "github/rychallener/ThERESA",
-	"url": " https://rseng.github.io/software/repository/github/rychallener/ThERESA",
-	"content": "3D Exoplanet Cartography"
+	"github/WGLab/LongGF": {
+	"id": "github/WGLab/LongGF",
+	"title": "github/WGLab/LongGF",
+	"url": " https://rseng.github.io/software/repository/github/WGLab/LongGF",
+	"content": "A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing"
 	},
-	"github/paulhjkelly/taskgraph-metaprogramming": {
-	"id": "github/paulhjkelly/taskgraph-metaprogramming",
-	"title": "github/paulhjkelly/taskgraph-metaprogramming",
-	"url": " https://rseng.github.io/software/repository/github/paulhjkelly/taskgraph-metaprogramming",
-	"content": "The TaskGraph Meta-programming Library is a C++ package that supports run-time code generation - programs that generate code on the fly, then execute it.  And having built a piece of code, you can apply various transformations to it (such as loop interchange and tiling)."
+	"github/WGLab/InterVar": {
+	"id": "github/WGLab/InterVar",
+	"title": "github/WGLab/InterVar",
+	"url": " https://rseng.github.io/software/repository/github/WGLab/InterVar",
+	"content": "A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline"
 	},
-	"github/poldracklab/nitransforms": {
-	"id": "github/poldracklab/nitransforms",
-	"title": "github/poldracklab/nitransforms",
-	"url": " https://rseng.github.io/software/repository/github/poldracklab/nitransforms",
-	"content": "a standalone fork of nipy/nibabel#656"
+	"github/ACCarnall/bagpipes": {
+	"id": "github/ACCarnall/bagpipes",
+	"title": "github/ACCarnall/bagpipes",
+	"url": " https://rseng.github.io/software/repository/github/ACCarnall/bagpipes",
+	"content": "Bagpipes is a state of the art code for generating realistic model galaxy spectra and fitting these to spectroscopic and photometric observations. Users should install with pip, not by cloning the repository."
 	},
-	"github/poldracklab/mriqc": {
-	"id": "github/poldracklab/mriqc",
-	"title": "github/poldracklab/mriqc",
-	"url": " https://rseng.github.io/software/repository/github/poldracklab/mriqc",
-	"content": "Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain"
+	"github/ACCarnall/SpectRes": {
+	"id": "github/ACCarnall/SpectRes",
+	"title": "github/ACCarnall/SpectRes",
+	"url": " https://rseng.github.io/software/repository/github/ACCarnall/SpectRes",
+	"content": "SpectRes is a Python module which efficiently resamples spectra and their associated uncertainties onto an arbitrary wavelength grid. Read the documentation at"
 	},
-	"github/BiocomputeLab/paraSBOLv": {
-	"id": "github/BiocomputeLab/paraSBOLv",
-	"title": "github/BiocomputeLab/paraSBOLv",
-	"url": " https://rseng.github.io/software/repository/github/BiocomputeLab/paraSBOLv",
-	"content": "A lightweight Python library designed to simplify the development of tools that render SBOL Visual diagrams."
+	"github/snugel/cas-offinder": {
+	"id": "github/snugel/cas-offinder",
+	"title": "github/snugel/cas-offinder",
+	"url": " https://rseng.github.io/software/repository/github/snugel/cas-offinder",
+	"content": "An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases."
 	},
-	"github/cajohare/NeutrinoFog": {
-	"id": "github/cajohare/NeutrinoFog",
-	"title": "github/cajohare/NeutrinoFog",
-	"url": " https://rseng.github.io/software/repository/github/cajohare/NeutrinoFog",
-	"content": "Neutrino fog and floor for direct dark matter searches"
+	"github/markusbonse/applefy": {
+	"id": "github/markusbonse/applefy",
+	"title": "github/markusbonse/applefy",
+	"url": " https://rseng.github.io/software/repository/github/markusbonse/applefy",
+	"content": "A Python package for calculating detection limits for exoplanet high contrast imaging (HCI) datasets."
 	},
-	"github/PEREGRINE-GW/saqqara": {
-	"id": "github/PEREGRINE-GW/saqqara",
-	"title": "github/PEREGRINE-GW/saqqara",
-	"url": " https://rseng.github.io/software/repository/github/PEREGRINE-GW/saqqara",
-	"content": " A simulation-based Inference (SBI) library designed for stochastic gravitational wave background data analysis"
+	"github/ckm3/Py-PDM": {
+	"id": "github/ckm3/Py-PDM",
+	"title": "github/ckm3/Py-PDM",
+	"url": " https://rseng.github.io/software/repository/github/ckm3/Py-PDM",
+	"content": "A Python wrapper of the Phase Dispersion Minimization (PDM), which is a C code written by Stellingwerf."
 	},
-	"github/PEREGRINE-GW/peregrine": {
-	"id": "github/PEREGRINE-GW/peregrine",
-	"title": "github/PEREGRINE-GW/peregrine",
-	"url": " https://rseng.github.io/software/repository/github/PEREGRINE-GW/peregrine",
-	"content": "A simulation-based Inference (SBI) library designed to perform analysis on a wide class of gravitational wave signals"
+	"github/libdynd/dynd-python": {
+	"id": "github/libdynd/dynd-python",
+	"title": "github/libdynd/dynd-python",
+	"url": " https://rseng.github.io/software/repository/github/libdynd/dynd-python",
+	"content": "Python exposure of dynd"
 	},
-	"github/studla/RYUTO": {
-	"id": "github/studla/RYUTO",
-	"title": "github/studla/RYUTO",
-	"url": " https://rseng.github.io/software/repository/github/studla/RYUTO",
-	"content": "Ryuto: Network-Flow based Transcriptome Reconstruction"
+	"github/yrjia1015/CRISPRCasStack": {
+	"id": "github/yrjia1015/CRISPRCasStack",
+	"title": "github/yrjia1015/CRISPRCasStack",
+	"url": " https://rseng.github.io/software/repository/github/yrjia1015/CRISPRCasStack",
+	"content": "A toolkit for automated identification of Cas proteins and CRISPR-Cas locus"
 	},
-	"github/SoFiA-Admin/SoFiA-2": {
-	"id": "github/SoFiA-Admin/SoFiA-2",
-	"title": "github/SoFiA-Admin/SoFiA-2",
-	"url": " https://rseng.github.io/software/repository/github/SoFiA-Admin/SoFiA-2",
-	"content": "Version 2 of the HI Source Finding Application (SoFiA)"
+	"github/N-BodyShop/fof": {
+	"id": "github/N-BodyShop/fof",
+	"title": "github/N-BodyShop/fof",
+	"url": " https://rseng.github.io/software/repository/github/N-BodyShop/fof",
+	"content": "Friends of Friends halo finder"
 	},
-	"github/OceanGenomics/mudskipper": {
-	"id": "github/OceanGenomics/mudskipper",
-	"title": "github/OceanGenomics/mudskipper",
-	"url": " https://rseng.github.io/software/repository/github/OceanGenomics/mudskipper",
-	"content": "A tool for projecting genomic alignments to transcriptomic coordinates"
+	"github/N-BodyShop/smooth": {
+	"id": "github/N-BodyShop/smooth",
+	"title": "github/N-BodyShop/smooth",
+	"url": " https://rseng.github.io/software/repository/github/N-BodyShop/smooth",
+	"content": "A Smoothing Program for N-body Simulations"
 	},
-	"github/JeffLCoughlin/skye": {
-	"id": "github/JeffLCoughlin/skye",
-	"title": "github/JeffLCoughlin/skye",
-	"url": " https://rseng.github.io/software/repository/github/JeffLCoughlin/skye",
-	"content": "The Kepler DR25 Skye Test"
+	"github/rychallener/ThERESA": {
+	"id": "github/rychallener/ThERESA",
+	"title": "github/rychallener/ThERESA",
+	"url": " https://rseng.github.io/software/repository/github/rychallener/ThERESA",
+	"content": "3D Exoplanet Cartography"
 	},
-	"github/JeffLCoughlin/EphemMatch": {
-	"id": "github/JeffLCoughlin/EphemMatch",
-	"title": "github/JeffLCoughlin/EphemMatch",
-	"url": " https://rseng.github.io/software/repository/github/JeffLCoughlin/EphemMatch",
-	"content": "Code to do ephemeris matching of DR25 TCEs, KOIs, and EBs for false positive identificaiton."
+	"github/cdw9bf/CompactGroup": {
+	"id": "github/cdw9bf/CompactGroup",
+	"title": "github/cdw9bf/CompactGroup",
+	"url": " https://rseng.github.io/software/repository/github/cdw9bf/CompactGroup",
+	"content": "Code to recreate the results of Wiens et al 2019 (https://authors.library.caltech.edu/93762/)"
 	},
-	"github/marinebon/obisindicators": {
-	"id": "github/marinebon/obisindicators",
-	"title": "github/marinebon/obisindicators",
-	"url": " https://rseng.github.io/software/repository/github/marinebon/obisindicators",
-	"content": "R package for generating indicators from OBIS"
+	"github/parsotat/batanalysis": {
+	"id": "github/parsotat/batanalysis",
+	"title": "github/parsotat/batanalysis",
+	"url": " https://rseng.github.io/software/repository/github/parsotat/batanalysis",
+	"content": "A python HEASOFT wrapper for processing Swift-BAT data."
 	},
-	"github/vgteam/vg": {
-	"id": "github/vgteam/vg",
-	"title": "github/vgteam/vg",
-	"url": " https://rseng.github.io/software/repository/github/vgteam/vg",
-	"content": "tools for working with genome variation graphs"
+	"github/nickelnine37/pykronecker": {
+	"id": "github/nickelnine37/pykronecker",
+	"title": "github/nickelnine37/pykronecker",
+	"url": " https://rseng.github.io/software/repository/github/nickelnine37/pykronecker",
+	"content": "A python library for creating Kronecker Product operators with efficient lazy computation"
 	},
-	"github/vgteam/vg#vg": {
-	"id": "github/vgteam/vg#vg",
-	"title": "github/vgteam/vg#vg",
-	"url": " https://rseng.github.io/software/repository/github/vgteam/vg#vg",
-	"content": "tools for working with genome variation graphs"
+	"github/bio-phys/BioEn": {
+	"id": "github/bio-phys/BioEn",
+	"title": "github/bio-phys/BioEn",
+	"url": " https://rseng.github.io/software/repository/github/bio-phys/BioEn",
+	"content": "BioEn - Bayesian Inference Of ENsembles"
 	},
-	"github/lxvm/AutoBZ.jl": {
-	"id": "github/lxvm/AutoBZ.jl",
-	"title": "github/lxvm/AutoBZ.jl",
-	"url": " https://rseng.github.io/software/repository/github/lxvm/AutoBZ.jl",
-	"content": "Automatic and adaptive BZ integration for electronic properties"
+	"github/bonsai-team/Porechop_ABI": {
+	"id": "github/bonsai-team/Porechop_ABI",
+	"title": "github/bonsai-team/Porechop_ABI",
+	"url": " https://rseng.github.io/software/repository/github/bonsai-team/Porechop_ABI",
+	"content": "Adapter trimmer for Oxford Nanopore reads using ab initio method"
 	},
-	"github/RenneLab/hybkit": {
-	"id": "github/RenneLab/hybkit",
-	"title": "github/RenneLab/hybkit",
-	"url": " https://rseng.github.io/software/repository/github/RenneLab/hybkit",
-	"content": "Toolkit for analysis of &#34;.hyb&#34; format nucleotide sequence data from chimeric RNA experiments."
+	"github/bonsai-team/matam": {
+	"id": "github/bonsai-team/matam",
+	"title": "github/bonsai-team/matam",
+	"url": " https://rseng.github.io/software/repository/github/bonsai-team/matam",
+	"content": "Mapping-Assisted Targeted-Assembly for Metagenomics"
 	},
-	"github/shankarpandala/lazypredict": {
-	"id": "github/shankarpandala/lazypredict",
-	"title": "github/shankarpandala/lazypredict",
-	"url": " https://rseng.github.io/software/repository/github/shankarpandala/lazypredict",
-	"content": "Lazy Predict help build a lot of basic models without much code and helps understand which models works better without any parameter tuning"
+	"github/dmentipl/plonk": {
+	"id": "github/dmentipl/plonk",
+	"title": "github/dmentipl/plonk",
+	"url": " https://rseng.github.io/software/repository/github/dmentipl/plonk",
+	"content": "Smoothed particle hydrodynamics analysis and visualization with Python."
 	},
-	"github/HannahMDoherty/ChemGAPP": {
-	"id": "github/HannahMDoherty/ChemGAPP",
-	"title": "github/HannahMDoherty/ChemGAPP",
-	"url": " https://rseng.github.io/software/repository/github/HannahMDoherty/ChemGAPP",
-	"content": "A package and series of Streamlit apps for analysing chemical genomic screen data"
+	"github/astrobrent/mappings": {
+	"id": "github/astrobrent/mappings",
+	"title": "github/astrobrent/mappings",
+	"url": " https://rseng.github.io/software/repository/github/astrobrent/mappings",
+	"content": "MAPPINGSIII repository"
 	},
-	"github/jcorbino/mole": {
-	"id": "github/jcorbino/mole",
-	"title": "github/jcorbino/mole",
-	"url": " https://rseng.github.io/software/repository/github/jcorbino/mole",
-	"content": "Mimetic Operators Library Enhanced"
+	"github/astrobrent/itera": {
+	"id": "github/astrobrent/itera",
+	"title": "github/astrobrent/itera",
+	"url": " https://rseng.github.io/software/repository/github/astrobrent/itera",
+	"content": "ITERA: IDL line ratio tool"
 	},
-	"github/smirik/resonances": {
-	"id": "github/smirik/resonances",
-	"title": "github/smirik/resonances",
-	"url": " https://rseng.github.io/software/repository/github/smirik/resonances",
-	"content": "A python package for identification of mean-motion resonances in the Solar system and other planetary systems."
+	"github/light-curve/light-curve": {
+	"id": "github/light-curve/light-curve",
+	"title": "github/light-curve/light-curve",
+	"url": " https://rseng.github.io/software/repository/github/light-curve/light-curve",
+	"content": "Collection of Rust packages for time-series analysis"
 	},
-	"github/jarvist/Julia-Phonons": {
-	"id": "github/jarvist/Julia-Phonons",
-	"title": "github/jarvist/Julia-Phonons",
-	"url": " https://rseng.github.io/software/repository/github/jarvist/Julia-Phonons",
-	"content": "Julia codes to play with Phonons"
+	"github/light-curve/light-curve-python": {
+	"id": "github/light-curve/light-curve-python",
+	"title": "github/light-curve/light-curve-python",
+	"url": " https://rseng.github.io/software/repository/github/light-curve/light-curve-python",
+	"content": "light-curve feature extraction library for Python"
 	},
-	"github/Heldenkombinat/Logodetect": {
-	"id": "github/Heldenkombinat/Logodetect",
-	"title": "github/Heldenkombinat/Logodetect",
-	"url": " https://rseng.github.io/software/repository/github/Heldenkombinat/Logodetect",
-	"content": "Find logos in images and videos in just one-shot. Never be embarrassed again to say that you have a small data situation!"
+	"github/phenology/cgc": {
+	"id": "github/phenology/cgc",
+	"title": "github/phenology/cgc",
+	"url": " https://rseng.github.io/software/repository/github/phenology/cgc",
+	"content": "A clustering tool for geospatial applications"
 	},
-	"github/geoelements/gns": {
-	"id": "github/geoelements/gns",
-	"title": "github/geoelements/gns",
-	"url": " https://rseng.github.io/software/repository/github/geoelements/gns",
-	"content": "Graph Network Simulator"
+	"github/casacore/casacore": {
+	"id": "github/casacore/casacore",
+	"title": "github/casacore/casacore",
+	"url": " https://rseng.github.io/software/repository/github/casacore/casacore",
+	"content": "Suite of C++ libraries for radio astronomy data processing"
 	},
-	"github/swiftbiosciences/primerclip": {
-	"id": "github/swiftbiosciences/primerclip",
-	"title": "github/swiftbiosciences/primerclip",
-	"url": " https://rseng.github.io/software/repository/github/swiftbiosciences/primerclip",
-	"content": "Swift Accel-Amplicon primer trimming tool for fast alignment-based primer trimming"
+	"github/dirac-institute/asterogap": {
+	"id": "github/dirac-institute/asterogap",
+	"title": "github/dirac-institute/asterogap",
+	"url": " https://rseng.github.io/software/repository/github/dirac-institute/asterogap",
+	"content": "A Bayesian-based Gaussian Process model set to fit sparsely-sampled asteroid light curves."
 	},
-	"github/cblakeastro/intensitypower": {
-	"id": "github/cblakeastro/intensitypower",
-	"title": "github/cblakeastro/intensitypower",
-	"url": " https://rseng.github.io/software/repository/github/cblakeastro/intensitypower",
-	"content": "None"
+	"github/renecotyfanboy/jaxspec": {
+	"id": "github/renecotyfanboy/jaxspec",
+	"title": "github/renecotyfanboy/jaxspec",
+	"url": " https://rseng.github.io/software/repository/github/renecotyfanboy/jaxspec",
+	"content": "jaxspec is an X-ray spectra Bayesian analysis package, relying on JAX to enable just in time compilation"
 	},
-	"github/r3w0p/bobocep": {
-	"id": "github/r3w0p/bobocep",
-	"title": "github/r3w0p/bobocep",
-	"url": " https://rseng.github.io/software/repository/github/r3w0p/bobocep",
-	"content": "A fault-tolerant Complex Event Processing engine designed for edge computing in Internet of Things systems."
+	"github/daniloceano/LorenzCycleToolkit": {
+	"id": "github/daniloceano/LorenzCycleToolkit",
+	"title": "github/daniloceano/LorenzCycleToolkit",
+	"url": " https://rseng.github.io/software/repository/github/daniloceano/LorenzCycleToolkit",
+	"content": "Program for computing the Lorenz Energy Cycle (LEC) in a closed region of the atmosphere."
 	},
-	"github/tud-hri/travia": {
-	"id": "github/tud-hri/travia",
-	"title": "github/tud-hri/travia",
-	"url": " https://rseng.github.io/software/repository/github/tud-hri/travia",
-	"content": "a Traffic data Visualization and Annotation tool"
+	"github/BayraktarLab/cell2location": {
+	"id": "github/BayraktarLab/cell2location",
+	"title": "github/BayraktarLab/cell2location",
+	"url": " https://rseng.github.io/software/repository/github/BayraktarLab/cell2location",
+	"content": "Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)"
 	},
-	"github/tud-hri/joan": {
-	"id": "github/tud-hri/joan",
-	"title": "github/tud-hri/joan",
-	"url": " https://rseng.github.io/software/repository/github/tud-hri/joan",
-	"content": "JOAN is an software package that allows to perform human-in-the loop experiments in the open source driving simulator CARLA. JOAN facilitates communication between human input devices and CARLA, the implementation of haptic feedback, systematically storing experiment data, and the automatic execution of experiments with multiple experimental conditions."
+	"github/weizhouUMICH/SAIGE": {
+	"id": "github/weizhouUMICH/SAIGE",
+	"title": "github/weizhouUMICH/SAIGE",
+	"url": " https://rseng.github.io/software/repository/github/weizhouUMICH/SAIGE",
+	"content": "None"
 	},
-	"github/jepegit/cellpy": {
-	"id": "github/jepegit/cellpy",
-	"title": "github/jepegit/cellpy",
-	"url": " https://rseng.github.io/software/repository/github/jepegit/cellpy",
-	"content": "extract and tweak data from electrochemical tests of cells"
+	"github/sgshulman/DGEM": {
+	"id": "github/sgshulman/DGEM",
+	"title": "github/sgshulman/DGEM",
+	"url": " https://rseng.github.io/software/repository/github/sgshulman/DGEM",
+	"content": "A simple three-dimensional dust continuum radiative transfer code for method comparison"
 	},
-	"github/gmrandazzo/libscientific": {
-	"id": "github/gmrandazzo/libscientific",
-	"title": "github/gmrandazzo/libscientific",
-	"url": " https://rseng.github.io/software/repository/github/gmrandazzo/libscientific",
-	"content": "Libscientific is a C framework  for multivariate and other statistical analysis"
+	"github/zhongqiu1245/CCS-Net": {
+	"id": "github/zhongqiu1245/CCS-Net",
+	"title": "github/zhongqiu1245/CCS-Net",
+	"url": " https://rseng.github.io/software/repository/github/zhongqiu1245/CCS-Net",
+	"content": "None"
 	},
-	"github/mh-skjelvareid/synaptus": {
-	"id": "github/mh-skjelvareid/synaptus",
-	"title": "github/mh-skjelvareid/synaptus",
-	"url": " https://rseng.github.io/software/repository/github/mh-skjelvareid/synaptus",
-	"content": "A Matlab/Octave toolbox for synthetic aperture ultrasound imaging"
+	"github/EliabCanul/nauyaca": {
+	"id": "github/EliabCanul/nauyaca",
+	"title": "github/EliabCanul/nauyaca",
+	"url": " https://rseng.github.io/software/repository/github/EliabCanul/nauyaca",
+	"content": "Nauyaca is a tool to determine planetary masses and orbital elements through the fitting of observed mid-transit times, from a N-body approach."
 	},
-	"github/sanctuuary/ape": {
-	"id": "github/sanctuuary/ape",
-	"title": "github/sanctuuary/ape",
-	"url": " https://rseng.github.io/software/repository/github/sanctuuary/ape",
-	"content": "APE (Automated Pipeline Explorer)"
+	"github/giswqs/leafmap": {
+	"id": "github/giswqs/leafmap",
+	"title": "github/giswqs/leafmap",
+	"url": " https://rseng.github.io/software/repository/github/giswqs/leafmap",
+	"content": "A Python package for interactive mapping and geospatial analysis  with minimal coding in a Jupyter environment"
 	},
-	"github/USNavalResearchLaboratory/eispac": {
-	"id": "github/USNavalResearchLaboratory/eispac",
-	"title": "github/USNavalResearchLaboratory/eispac",
-	"url": " https://rseng.github.io/software/repository/github/USNavalResearchLaboratory/eispac",
-	"content": "Read the Docs"
+	"github/giswqs/lidar": {
+	"id": "github/giswqs/lidar",
+	"title": "github/giswqs/lidar",
+	"url": " https://rseng.github.io/software/repository/github/giswqs/lidar",
+	"content": "A Python package for delineating nested surface depressions from digital elevation data."
 	},
-	"github/RasmussenLab/vamb": {
-	"id": "github/RasmussenLab/vamb",
-	"title": "github/RasmussenLab/vamb",
-	"url": " https://rseng.github.io/software/repository/github/RasmussenLab/vamb",
-	"content": "Variational autoencoder for metagenomic binning"
+	"github/giswqs/geemap": {
+	"id": "github/giswqs/geemap",
+	"title": "github/giswqs/geemap",
+	"url": " https://rseng.github.io/software/repository/github/giswqs/geemap",
+	"content": "A Python package for interactive mapping with Google Earth Engine, ipyleaflet, and ipywidgets"
 	},
-	"github/tdaylan/pcat": {
-	"id": "github/tdaylan/pcat",
-	"title": "github/tdaylan/pcat",
-	"url": " https://rseng.github.io/software/repository/github/tdaylan/pcat",
-	"content": "A transdimensional, hierarchical, Bayesian framework to sample from a metamodel"
+	"github/jeffcsauer/arcos_arcospy_information": {
+	"id": "github/jeffcsauer/arcos_arcospy_information",
+	"title": "github/jeffcsauer/arcos_arcospy_information",
+	"url": " https://rseng.github.io/software/repository/github/jeffcsauer/arcos_arcospy_information",
+	"content": "This is an informational landing page for the R arcos and Python arcospy software"
 	},
-	"github/MNGuenther/allesfitter": {
-	"id": "github/MNGuenther/allesfitter",
-	"title": "github/MNGuenther/allesfitter",
-	"url": " https://rseng.github.io/software/repository/github/MNGuenther/allesfitter",
-	"content": "allesfitter is a convenient wrapper around the packages ellc (light curve and RV models), dynesty (static and dynamic nested sampling) emcee (Markov Chain Monte Carlo sampling) and celerite (Gaussian Process models)."
+	"github/fusk-kpu/StressResponseGenesAtlas": {
+	"id": "github/fusk-kpu/StressResponseGenesAtlas",
+	"title": "github/fusk-kpu/StressResponseGenesAtlas",
+	"url": " https://rseng.github.io/software/repository/github/fusk-kpu/StressResponseGenesAtlas",
+	"content": "None"
 	},
-	"github/biod/sambamba": {
-	"id": "github/biod/sambamba",
-	"title": "github/biod/sambamba",
-	"url": " https://rseng.github.io/software/repository/github/biod/sambamba",
-	"content": "Tools for working with SAM/BAM data"
+	"github/1054/Crab.Toolkit.michi2": {
+	"id": "github/1054/Crab.Toolkit.michi2",
+	"title": "github/1054/Crab.Toolkit.michi2",
+	"url": " https://rseng.github.io/software/repository/github/1054/Crab.Toolkit.michi2",
+	"content": "crab minimum chi2 toolkit"
 	},
-	"github/silburt/DeepMoon": {
-	"id": "github/silburt/DeepMoon",
-	"title": "github/silburt/DeepMoon",
-	"url": " https://rseng.github.io/software/repository/github/silburt/DeepMoon",
-	"content": "Convolutional neural network code for extracting Lunar craters from Digital Elevation Maps (DEMs)."
+	"github/vbaliga/gaussplotR": {
+	"id": "github/vbaliga/gaussplotR",
+	"title": "github/vbaliga/gaussplotR",
+	"url": " https://rseng.github.io/software/repository/github/vbaliga/gaussplotR",
+	"content": "🔔 Fit, predict, and plot 2D Gaussians in R"
 	},
-	"github/walaj/svaba": {
-	"id": "github/walaj/svaba",
-	"title": "github/walaj/svaba",
-	"url": " https://rseng.github.io/software/repository/github/walaj/svaba",
-	"content": "Structural variation and indel detection by local assembly"
+	"github/LeonSong1995/gsMap": {
+	"id": "github/LeonSong1995/gsMap",
+	"title": "github/LeonSong1995/gsMap",
+	"url": " https://rseng.github.io/software/repository/github/LeonSong1995/gsMap",
+	"content": "gsMap (genetically informed spatial mapping of cells for complex traits) integrates spatial transcriptomics (ST) data with genome-wide association study (GWAS) summary statistics to map cells to human complex traits, including diseases, in a spatially resolved manner."
 	},
-	"github/walaj/SeqLib": {
-	"id": "github/walaj/SeqLib",
-	"title": "github/walaj/SeqLib",
-	"url": " https://rseng.github.io/software/repository/github/walaj/SeqLib",
-	"content": "C++ htslib/bwa-mem/fermi interface for interrogating sequence data"
+	"github/szpiech/selscan": {
+	"id": "github/szpiech/selscan",
+	"title": "github/szpiech/selscan",
+	"url": " https://rseng.github.io/software/repository/github/szpiech/selscan",
+	"content": "Haplotype based scans for selection"
 	},
-	"github/gadomski/antimeridian": {
-	"id": "github/gadomski/antimeridian",
-	"title": "github/gadomski/antimeridian",
-	"url": " https://rseng.github.io/software/repository/github/gadomski/antimeridian",
-	"content": "Correct GeoJSON geometries that cross the 180th meridian"
+	"github/SMTG-Bham/doped": {
+	"id": "github/SMTG-Bham/doped",
+	"title": "github/SMTG-Bham/doped",
+	"url": " https://rseng.github.io/software/repository/github/SMTG-Bham/doped",
+	"content": "doped is a Python software for the generation, pre-/post-processing and analysis of defect supercell calculations, implementing the defect simulation workflow in an efficient, reproducible, user-friendly yet powerful and fully-customisable manner."
 	},
-	"github/aksholokhov/pysr3": {
-	"id": "github/aksholokhov/pysr3",
-	"title": "github/aksholokhov/pysr3",
-	"url": " https://rseng.github.io/software/repository/github/aksholokhov/pysr3",
-	"content": "SciKit-Learn compatible library for training mixed-effects models."
+	"github/SMTG-Bham/ThermoParser": {
+	"id": "github/SMTG-Bham/ThermoParser",
+	"title": "github/SMTG-Bham/ThermoParser",
+	"url": " https://rseng.github.io/software/repository/github/SMTG-Bham/ThermoParser",
+	"content": "A tool for streamlining data analysis and visualisation for thermoelectrics and charge carrier transport in computational materials science."
 	},
-	"github/davidpamos/MultiModes": {
-	"id": "github/davidpamos/MultiModes",
-	"title": "github/davidpamos/MultiModes",
-	"url": " https://rseng.github.io/software/repository/github/davidpamos/MultiModes",
-	"content": "An efficient tool for the analysis of pulsating stars"
+	"github/jfwallin/JSPAM": {
+	"id": "github/jfwallin/JSPAM",
+	"title": "github/jfwallin/JSPAM",
+	"url": " https://rseng.github.io/software/repository/github/jfwallin/JSPAM",
+	"content": "Software for simulating interacting galaxies using a restricted three-body approximation"
 	},
-	"github/Qiskit/qiskit-experiments": {
-	"id": "github/Qiskit/qiskit-experiments",
-	"title": "github/Qiskit/qiskit-experiments",
-	"url": " https://rseng.github.io/software/repository/github/Qiskit/qiskit-experiments",
-	"content": "Qiskit Experiments"
+	"github/cbrnr/sigviewer": {
+	"id": "github/cbrnr/sigviewer",
+	"title": "github/cbrnr/sigviewer",
+	"url": " https://rseng.github.io/software/repository/github/cbrnr/sigviewer",
+	"content": "SigViewer is a viewing application for biosignals."
 	},
-	"github/Qiskit/rustworkx": {
-	"id": "github/Qiskit/rustworkx",
-	"title": "github/Qiskit/rustworkx",
-	"url": " https://rseng.github.io/software/repository/github/Qiskit/rustworkx",
-	"content": "A high performance Python graph library implemented in Rust."
+	"github/cytham/nanovar": {
+	"id": "github/cytham/nanovar",
+	"title": "github/cytham/nanovar",
+	"url": " https://rseng.github.io/software/repository/github/cytham/nanovar",
+	"content": "Structural variant caller for low-depth long-read sequencing data"
 	},
-	"github/robashaw/libecpint": {
-	"id": "github/robashaw/libecpint",
-	"title": "github/robashaw/libecpint",
-	"url": " https://rseng.github.io/software/repository/github/robashaw/libecpint",
-	"content": "A C++ library for the efficient evaluation of integrals over effective core potentials."
+	"github/netsiphd/netrd": {
+	"id": "github/netsiphd/netrd",
+	"title": "github/netsiphd/netrd",
+	"url": " https://rseng.github.io/software/repository/github/netsiphd/netrd",
+	"content": "A library for network {reconstruction, distances, dynamics}"
 	},
-	"github/ArtRand/signalAlign": {
-	"id": "github/ArtRand/signalAlign",
-	"title": "github/ArtRand/signalAlign",
-	"url": " https://rseng.github.io/software/repository/github/ArtRand/signalAlign",
-	"content": "HMM-HDP models for MinION signal alignments"
+	"github/glass-dev/glass": {
+	"id": "github/glass-dev/glass",
+	"title": "github/glass-dev/glass",
+	"url": " https://rseng.github.io/software/repository/github/glass-dev/glass",
+	"content": "Generator for Large Scale Structure"
 	},
-	"github/VMBoehm/MADLens": {
-	"id": "github/VMBoehm/MADLens",
-	"title": "github/VMBoehm/MADLens",
-	"url": " https://rseng.github.io/software/repository/github/VMBoehm/MADLens",
-	"content": "a differentiable lensing simulator"
+	"github/icb-dcm/pyabc": {
+	"id": "github/icb-dcm/pyabc",
+	"title": "github/icb-dcm/pyabc",
+	"url": " https://rseng.github.io/software/repository/github/icb-dcm/pyabc",
+	"content": "distributed, likelihood-free inference"
 	},
-	"github/ryokbys/nap": {
-	"id": "github/ryokbys/nap",
-	"title": "github/ryokbys/nap",
-	"url": " https://rseng.github.io/software/repository/github/ryokbys/nap",
-	"content": "Nagoya Atomistic-simulation Package (NAP). Why don&#39;t you take a NAP? ;)"
+	"github/demorest/nanopipe": {
+	"id": "github/demorest/nanopipe",
+	"title": "github/demorest/nanopipe",
+	"url": " https://rseng.github.io/software/repository/github/demorest/nanopipe",
+	"content": "Calibration and TOA generation scripts for NANOGrav data"
 	},
-	"github/fastpm/fastpm": {
-	"id": "github/fastpm/fastpm",
-	"title": "github/fastpm/fastpm",
-	"url": " https://rseng.github.io/software/repository/github/fastpm/fastpm",
-	"content": "fastPM - A N-body Particle Mesh solver that scales"
+	"github/tcollett/LensPop": {
+	"id": "github/tcollett/LensPop",
+	"title": "github/tcollett/LensPop",
+	"url": " https://rseng.github.io/software/repository/github/tcollett/LensPop",
+	"content": "None"
 	},
-	"github/EddyRivasLab/infernal": {
-	"id": "github/EddyRivasLab/infernal",
-	"title": "github/EddyRivasLab/infernal",
-	"url": " https://rseng.github.io/software/repository/github/EddyRivasLab/infernal",
-	"content": "RNA secondary structure/sequence profiles for homology search and alignment"
+	"github/mrvollger/fibertools-rs": {
+	"id": "github/mrvollger/fibertools-rs",
+	"title": "github/mrvollger/fibertools-rs",
+	"url": " https://rseng.github.io/software/repository/github/mrvollger/fibertools-rs",
+	"content": "Tools for fiberseq data written in rust. "
 	},
-	"github/EddyRivasLab/hmmer": {
-	"id": "github/EddyRivasLab/hmmer",
-	"title": "github/EddyRivasLab/hmmer",
-	"url": " https://rseng.github.io/software/repository/github/EddyRivasLab/hmmer",
-	"content": "HMMER: biological sequence analysis using profile HMMs"
+	"github/mrvollger/rustybam": {
+	"id": "github/mrvollger/rustybam",
+	"title": "github/mrvollger/rustybam",
+	"url": " https://rseng.github.io/software/repository/github/mrvollger/rustybam",
+	"content": "bioinformatics toolkit in rust"
 	},
-	"github/henry2004y/Vlasiator.jl": {
-	"id": "github/henry2004y/Vlasiator.jl",
-	"title": "github/henry2004y/Vlasiator.jl",
-	"url": " https://rseng.github.io/software/repository/github/henry2004y/Vlasiator.jl",
-	"content": "Data processor for Vlasiator"
+	"github/Hi-COLACode/Hi-COLA": {
+	"id": "github/Hi-COLACode/Hi-COLA",
+	"title": "github/Hi-COLACode/Hi-COLA",
+	"url": " https://rseng.github.io/software/repository/github/Hi-COLACode/Hi-COLA",
+	"content": "Hi-COLA simulates cosmological large-scale structure for a wide class of Horndeski theories. Built using a COLA solver forked from FML by HAWinther."
 	},
-	"github/remingtonsexton/BADASS3": {
-	"id": "github/remingtonsexton/BADASS3",
-	"title": "github/remingtonsexton/BADASS3",
-	"url": " https://rseng.github.io/software/repository/github/remingtonsexton/BADASS3",
-	"content": "Bayesian AGN Decomposition Analysis for SDSS Spectra"
+	"github/TheFischerLab/FLEXR": {
+	"id": "github/TheFischerLab/FLEXR",
+	"title": "github/TheFischerLab/FLEXR",
+	"url": " https://rseng.github.io/software/repository/github/TheFischerLab/FLEXR",
+	"content": "Multi-conformer modeling of crystallographic protein structures"
 	},
-	"github/FarnazFouladi/HashSeq_Manuscript": {
-	"id": "github/FarnazFouladi/HashSeq_Manuscript",
-	"title": "github/FarnazFouladi/HashSeq_Manuscript",
-	"url": " https://rseng.github.io/software/repository/github/FarnazFouladi/HashSeq_Manuscript",
+	"github/NielsenBerkeleyLab/sconce": {
+	"id": "github/NielsenBerkeleyLab/sconce",
+	"title": "github/NielsenBerkeleyLab/sconce",
+	"url": " https://rseng.github.io/software/repository/github/NielsenBerkeleyLab/sconce",
 	"content": "None"
 	},
-	"github/jrenaud90/TidalPy": {
-	"id": "github/jrenaud90/TidalPy",
-	"title": "github/jrenaud90/TidalPy",
-	"url": " https://rseng.github.io/software/repository/github/jrenaud90/TidalPy",
-	"content": "Software suite to perform solid-body tidal dissipation calculations for rocky and icy worlds"
+	"github/epic-astronomy/EPIC": {
+	"id": "github/epic-astronomy/EPIC",
+	"title": "github/epic-astronomy/EPIC",
+	"url": " https://rseng.github.io/software/repository/github/epic-astronomy/EPIC",
+	"content": "None"
 	},
-	"github/FraunhoferIWES/foxes": {
-	"id": "github/FraunhoferIWES/foxes",
-	"title": "github/FraunhoferIWES/foxes",
-	"url": " https://rseng.github.io/software/repository/github/FraunhoferIWES/foxes",
-	"content": "Farm Optimization and eXtended yield Evaluation Software"
+	"github/aqlaboratory/openfold": {
+	"id": "github/aqlaboratory/openfold",
+	"title": "github/aqlaboratory/openfold",
+	"url": " https://rseng.github.io/software/repository/github/aqlaboratory/openfold",
+	"content": "Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2"
 	},
-	"github/tinawunderlich/MultichannelGPR": {
-	"id": "github/tinawunderlich/MultichannelGPR",
-	"title": "github/tinawunderlich/MultichannelGPR",
-	"url": " https://rseng.github.io/software/repository/github/tinawunderlich/MultichannelGPR",
-	"content": "A collection of MATLAB scripts for proccesing and visualization of (Multichannel) GPR data"
+	"github/ABM4ALL/Melodie": {
+	"id": "github/ABM4ALL/Melodie",
+	"title": "github/ABM4ALL/Melodie",
+	"url": " https://rseng.github.io/software/repository/github/ABM4ALL/Melodie",
+	"content": "A general framework for developing agent-based models in Python."
 	},
-	"github/tmcclintock/AReconstructionTool": {
-	"id": "github/tmcclintock/AReconstructionTool",
-	"title": "github/tmcclintock/AReconstructionTool",
-	"url": " https://rseng.github.io/software/repository/github/tmcclintock/AReconstructionTool",
-	"content": "ART: A Reconstruction Tool. For reconstructing probability distributions using Gaussian processes."
+	"github/stevengiacalone/triceratops": {
+	"id": "github/stevengiacalone/triceratops",
+	"title": "github/stevengiacalone/triceratops",
+	"url": " https://rseng.github.io/software/repository/github/stevengiacalone/triceratops",
+	"content": "Tool for Rating Interesting Candidate Exoplanets and Reliability Analysis of Transits Originating from Proximate Stars"
 	},
-	"github/tmcclintock/cluster_toolkit": {
-	"id": "github/tmcclintock/cluster_toolkit",
-	"title": "github/tmcclintock/cluster_toolkit",
-	"url": " https://rseng.github.io/software/repository/github/tmcclintock/cluster_toolkit",
-	"content": "Tools for analyzing galaxy clusters."
+	"github/RealTimeGenomics/rtg-tools": {
+	"id": "github/RealTimeGenomics/rtg-tools",
+	"title": "github/RealTimeGenomics/rtg-tools",
+	"url": " https://rseng.github.io/software/repository/github/RealTimeGenomics/rtg-tools",
+	"content": "RTG Tools: Utilities for accurate VCF comparison and manipulation"
 	},
-	"github/humanfactors/FIPS": {
-	"id": "github/humanfactors/FIPS",
-	"title": "github/humanfactors/FIPS",
-	"url": " https://rseng.github.io/software/repository/github/humanfactors/FIPS",
-	"content": "The Fatigue Impairment Prediction Suite (for R)"
+	"github/mingzehuang/latentcor": {
+	"id": "github/mingzehuang/latentcor",
+	"title": "github/mingzehuang/latentcor",
+	"url": " https://rseng.github.io/software/repository/github/mingzehuang/latentcor",
+	"content": "latentcor is an R package provides estimation for latent correlation with mixed data types (continuous, binary, truncated and ternary)."
 	},
-	"github/jalombar/starsmasher": {
-	"id": "github/jalombar/starsmasher",
-	"title": "github/jalombar/starsmasher",
-	"url": " https://rseng.github.io/software/repository/github/jalombar/starsmasher",
-	"content": "A Smoothed Particle Hydrodynamics code for smashing stars (and planets)"
+	"github/sandialabs/pvOps": {
+	"id": "github/sandialabs/pvOps",
+	"title": "github/sandialabs/pvOps",
+	"url": " https://rseng.github.io/software/repository/github/sandialabs/pvOps",
+	"content": "A set of documented functions for supporting operations research of photovoltaic energy systems. "
 	},
-	"github/gmzsebastian/FLEET": {
-	"id": "github/gmzsebastian/FLEET",
-	"title": "github/gmzsebastian/FLEET",
-	"url": " https://rseng.github.io/software/repository/github/gmzsebastian/FLEET",
-	"content": "Finding Luminous and Exotic Extragalactic Transients"
+	"github/arumugamlab/msamtools": {
+	"id": "github/arumugamlab/msamtools",
+	"title": "github/arumugamlab/msamtools",
+	"url": " https://rseng.github.io/software/repository/github/arumugamlab/msamtools",
+	"content": "Metagenomics-related extended functionalities to samtools"
 	},
-	"github/ihmwg/python-modelcif": {
-	"id": "github/ihmwg/python-modelcif",
-	"title": "github/ihmwg/python-modelcif",
-	"url": " https://rseng.github.io/software/repository/github/ihmwg/python-modelcif",
-	"content": " Python package for handling ModelCIF mmCIF and BinaryCIF files "
+	"github/ZhaiLab-SUSTech/FLEPSeq": {
+	"id": "github/ZhaiLab-SUSTech/FLEPSeq",
+	"title": "github/ZhaiLab-SUSTech/FLEPSeq",
+	"url": " https://rseng.github.io/software/repository/github/ZhaiLab-SUSTech/FLEPSeq",
+	"content": "The analysis pipeline for FLEP-seq"
 	},
-	"github/PolymathicAI/AstroCLIP": {
-	"id": "github/PolymathicAI/AstroCLIP",
-	"title": "github/PolymathicAI/AstroCLIP",
-	"url": " https://rseng.github.io/software/repository/github/PolymathicAI/AstroCLIP",
-	"content": "Multimodal contrastive pretraining for astronomical data"
+	"github/baxmittens/OpenGeoSysUncertaintyQuantification.jl": {
+	"id": "github/baxmittens/OpenGeoSysUncertaintyQuantification.jl",
+	"title": "github/baxmittens/OpenGeoSysUncertaintyQuantification.jl",
+	"url": " https://rseng.github.io/software/repository/github/baxmittens/OpenGeoSysUncertaintyQuantification.jl",
+	"content": "An uncertainty quantification toolbox for OpenGeoSys 6"
 	},
-	"github/cosmo-ethz/seek": {
-	"id": "github/cosmo-ethz/seek",
-	"title": "github/cosmo-ethz/seek",
-	"url": " https://rseng.github.io/software/repository/github/cosmo-ethz/seek",
-	"content": "A flexible and easy-to-extend data processing pipeline for single dish radio telescopes"
+	"github/baxmittens/VTUFileHandler": {
+	"id": "github/baxmittens/VTUFileHandler",
+	"title": "github/baxmittens/VTUFileHandler",
+	"url": " https://rseng.github.io/software/repository/github/baxmittens/VTUFileHandler",
+	"content": "A VTU library in the Julia language that implements an algebra for basic mathematical operations on VTU data."
 	},
-	"github/cosmo-ethz/CosmoHammer": {
-	"id": "github/cosmo-ethz/CosmoHammer",
-	"title": "github/cosmo-ethz/CosmoHammer",
-	"url": " https://rseng.github.io/software/repository/github/cosmo-ethz/CosmoHammer",
-	"content": "Cosmological parameter estimation with the MCMC Hammer, please use https://cosmo-gitlab.phys.ethz.ch/cosmo/CosmoHammer, this repository is outdated ! Docs at http://cosmo-docs.phys.ethz.ch/cosmoHammer/"
+	"github/jgieseler/solarmach": {
+	"id": "github/jgieseler/solarmach",
+	"title": "github/jgieseler/solarmach",
+	"url": " https://rseng.github.io/software/repository/github/jgieseler/solarmach",
+	"content": "Python package of the multi-spacecraft longitudinal configuration plotter Solar-MACH"
 	},
-	"github/cosmo-ethz/hide": {
-	"id": "github/cosmo-ethz/hide",
-	"title": "github/cosmo-ethz/hide",
-	"url": " https://rseng.github.io/software/repository/github/cosmo-ethz/hide",
-	"content": "A package for simulating of a single dish radio telescope survey"
+	"github/FRBs/FRB": {
+	"id": "github/FRBs/FRB",
+	"title": "github/FRBs/FRB",
+	"url": " https://rseng.github.io/software/repository/github/FRBs/FRB",
+	"content": "Python code related to DM calculations, estimations, and analysis"
 	},
-	"github/aomlomics/tourmaline": {
-	"id": "github/aomlomics/tourmaline",
-	"title": "github/aomlomics/tourmaline",
-	"url": " https://rseng.github.io/software/repository/github/aomlomics/tourmaline",
-	"content": "Amplicon sequence processing workflow using QIIME 2 and Snakemake"
+	"github/ChenYangyao/hipp": {
+	"id": "github/ChenYangyao/hipp",
+	"title": "github/ChenYangyao/hipp",
+	"url": " https://rseng.github.io/software/repository/github/ChenYangyao/hipp",
+	"content": "HIPP: Modern C++ Toolkit for HPC"
 	},
-	"github/cmoestl/3DCORE": {
-	"id": "github/cmoestl/3DCORE",
-	"title": "github/cmoestl/3DCORE",
-	"url": " https://rseng.github.io/software/repository/github/cmoestl/3DCORE",
-	"content": "3D coronal mass ejection flux rope modeling"
+	"github/BioMeCIS-Lab/OpenOmics": {
+	"id": "github/BioMeCIS-Lab/OpenOmics",
+	"title": "github/BioMeCIS-Lab/OpenOmics",
+	"url": " https://rseng.github.io/software/repository/github/BioMeCIS-Lab/OpenOmics",
+	"content": "A bioinformatics API and web-app to integrate multi-omics datasets &amp; interface with public databases."
 	},
-	"github/YonghuiDong/RawHummus": {
-	"id": "github/YonghuiDong/RawHummus",
-	"title": "github/YonghuiDong/RawHummus",
-	"url": " https://rseng.github.io/software/repository/github/YonghuiDong/RawHummus",
-	"content": "QC Check Tool for Metabolomics"
+	"github/cpiaulet/smint": {
+	"id": "github/cpiaulet/smint",
+	"title": "github/cpiaulet/smint",
+	"url": " https://rseng.github.io/software/repository/github/cpiaulet/smint",
+	"content": "Planet structure model interpolator"
 	},
-	"github/aalhossary/pyemgpipeline": {
-	"id": "github/aalhossary/pyemgpipeline",
-	"title": "github/aalhossary/pyemgpipeline",
-	"url": " https://rseng.github.io/software/repository/github/aalhossary/pyemgpipeline",
+	"github/miguelzuma/hi_class_public": {
+	"id": "github/miguelzuma/hi_class_public",
+	"title": "github/miguelzuma/hi_class_public",
+	"url": " https://rseng.github.io/software/repository/github/miguelzuma/hi_class_public",
+	"content": "Public version of Horndeski in the Cosmic Linear Anisotropy Solving System"
+	},
+	"github/pepamengual/UEP": {
+	"id": "github/pepamengual/UEP",
+	"title": "github/pepamengual/UEP",
+	"url": " https://rseng.github.io/software/repository/github/pepamengual/UEP",
 	"content": "None"
 	},
-	"github/QuaCaTeam/quaca": {
-	"id": "github/QuaCaTeam/quaca",
-	"title": "github/QuaCaTeam/quaca",
-	"url": " https://rseng.github.io/software/repository/github/QuaCaTeam/quaca",
-	"content": "QuaCa is an open-source library which provides fast calculations of nonequilibrium atom-surface interactions."
+	"github/FarnazFouladi/HashSeq_Manuscript": {
+	"id": "github/FarnazFouladi/HashSeq_Manuscript",
+	"title": "github/FarnazFouladi/HashSeq_Manuscript",
+	"url": " https://rseng.github.io/software/repository/github/FarnazFouladi/HashSeq_Manuscript",
+	"content": "None"
 	},
-	"github/tjiangHIT/cuteSV": {
-	"id": "github/tjiangHIT/cuteSV",
-	"title": "github/tjiangHIT/cuteSV",
-	"url": " https://rseng.github.io/software/repository/github/tjiangHIT/cuteSV",
-	"content": "Long read based human genomic structural variation detection with cuteSV"
+	"github/mayuresh159/starsense_algorithms": {
+	"id": "github/mayuresh159/starsense_algorithms",
+	"title": "github/mayuresh159/starsense_algorithms",
+	"url": " https://rseng.github.io/software/repository/github/mayuresh159/starsense_algorithms",
+	"content": "This is a software package for testing and performance evaluation of different star sensors. The algorithms used for calculating quaternions from star field images are : centroiding, geometric voting and QUEST algorithms. The physical parameters of a star sensor are parametrized and by changing these parameters various performance estimators like sky coverage, memory requirement, timing requirements etc can be estimated for the selected star sensor. "
 	},
-	"github/ketch/RK-Opt": {
-	"id": "github/ketch/RK-Opt",
-	"title": "github/ketch/RK-Opt",
-	"url": " https://rseng.github.io/software/repository/github/ketch/RK-Opt",
-	"content": "A package for the design of numerical ODE solvers"
+	"github/recipy/recipy": {
+	"id": "github/recipy/recipy",
+	"title": "github/recipy/recipy",
+	"url": " https://rseng.github.io/software/repository/github/recipy/recipy",
+	"content": "Effortless method to record provenance in Python"
 	},
-	"github/ketch/nodepy": {
-	"id": "github/ketch/nodepy",
-	"title": "github/ketch/nodepy",
-	"url": " https://rseng.github.io/software/repository/github/ketch/nodepy",
-	"content": "Analysis of initial value ODE solvers"
+	"github/DICP1810/SpotLink": {
+	"id": "github/DICP1810/SpotLink",
+	"title": "github/DICP1810/SpotLink",
+	"url": " https://rseng.github.io/software/repository/github/DICP1810/SpotLink",
+	"content": "SpotLinkTest"
 	},
-	"github/sbird/GenPK": {
-	"id": "github/sbird/GenPK",
-	"title": "github/sbird/GenPK",
-	"url": " https://rseng.github.io/software/repository/github/sbird/GenPK",
-	"content": "Program for finding the matter power spectrum from Gadget format files. Uses FFTW3 and GadgetReader."
+	"github/DICP1810/ComMap": {
+	"id": "github/DICP1810/ComMap",
+	"title": "github/DICP1810/ComMap",
+	"url": " https://rseng.github.io/software/repository/github/DICP1810/ComMap",
+	"content": "CXMS generated cross-linking pairs mapping to structures"
 	},
-	"github/sbird/fake_spectra": {
-	"id": "github/sbird/fake_spectra",
-	"title": "github/sbird/fake_spectra",
-	"url": " https://rseng.github.io/software/repository/github/sbird/fake_spectra",
-	"content": "A code for generating fake spectra from a cosmological simulation"
+	"github/beagle-dev/beagle-lib": {
+	"id": "github/beagle-dev/beagle-lib",
+	"title": "github/beagle-dev/beagle-lib",
+	"url": " https://rseng.github.io/software/repository/github/beagle-dev/beagle-lib",
+	"content": "general purpose library for evaluating the likelihood of sequence evolution on trees"
 	},
-	"github/reggiebernardo/PTAfast": {
-	"id": "github/reggiebernardo/PTAfast",
-	"title": "github/reggiebernardo/PTAfast",
-	"url": " https://rseng.github.io/software/repository/github/reggiebernardo/PTAfast",
-	"content": "Fast code for PTA correlations from SGWB"
+	"github/dgerosa/surrkick": {
+	"id": "github/dgerosa/surrkick",
+	"title": "github/dgerosa/surrkick",
+	"url": " https://rseng.github.io/software/repository/github/dgerosa/surrkick",
+	"content": "Black-hole kicks from numerical-relativity surrogate models"
 	},
-	"github/rgmyr/corebreakout": {
-	"id": "github/rgmyr/corebreakout",
-	"title": "github/rgmyr/corebreakout",
-	"url": " https://rseng.github.io/software/repository/github/rgmyr/corebreakout",
-	"content": "Segmentation and depth-alignment of geological core sample image columns via Mask-RCNN"
+	"github/dgerosa/spops": {
+	"id": "github/dgerosa/spops",
+	"title": "github/dgerosa/spops",
+	"url": " https://rseng.github.io/software/repository/github/dgerosa/spops",
+	"content": "Spinning black-hole binary POPulation Synthesis"
 	},
-	"github/adamantine-sim/adamantine": {
-	"id": "github/adamantine-sim/adamantine",
-	"title": "github/adamantine-sim/adamantine",
-	"url": " https://rseng.github.io/software/repository/github/adamantine-sim/adamantine",
-	"content": "Software to simulate heat transfer for additive manufacturing"
+	"github/dgerosa/gwdet": {
+	"id": "github/dgerosa/gwdet",
+	"title": "github/dgerosa/gwdet",
+	"url": " https://rseng.github.io/software/repository/github/dgerosa/gwdet",
+	"content": "Detectability of gravitational-wave signals from compact binary coalescences"
 	},
-	"github/GalagaBits/JWST-FGS-Spelunker": {
-	"id": "github/GalagaBits/JWST-FGS-Spelunker",
-	"title": "github/GalagaBits/JWST-FGS-Spelunker",
-	"url": " https://rseng.github.io/software/repository/github/GalagaBits/JWST-FGS-Spelunker",
-	"content": "JWST FGS Spelunker is a package that assists and finds technical anomalies from the JWST and stellar properties from guidestars."
+	"github/markur4/plotastic": {
+	"id": "github/markur4/plotastic",
+	"title": "github/markur4/plotastic",
+	"url": " https://rseng.github.io/software/repository/github/markur4/plotastic",
+	"content": "Streamlining statistical analysis by using plotting keywords in Python."
 	},
-	"github/RiccardoBiondi/segmentation": {
-	"id": "github/RiccardoBiondi/segmentation",
-	"title": "github/RiccardoBiondi/segmentation",
-	"url": " https://rseng.github.io/software/repository/github/RiccardoBiondi/segmentation",
-	"content": "COVID-19 Lung Segmentation"
+	"github/chrisaberson/BetterReg": {
+	"id": "github/chrisaberson/BetterReg",
+	"title": "github/chrisaberson/BetterReg",
+	"url": " https://rseng.github.io/software/repository/github/chrisaberson/BetterReg",
+	"content": "Better statistics for regression (OLS and logistic)"
 	},
-	"github/husseinaluie/FlowSieve": {
-	"id": "github/husseinaluie/FlowSieve",
-	"title": "github/husseinaluie/FlowSieve",
-	"url": " https://rseng.github.io/software/repository/github/husseinaluie/FlowSieve",
-	"content": "FlowSieve coarse-graining code base"
+	"github/yatisht/usher": {
+	"id": "github/yatisht/usher",
+	"title": "github/yatisht/usher",
+	"url": " https://rseng.github.io/software/repository/github/yatisht/usher",
+	"content": "Ultrafast Sample Placement on Existing Trees"
 	},
-	"github/CavendishAstrophysics/postmortem": {
-	"id": "github/CavendishAstrophysics/postmortem",
-	"title": "github/CavendishAstrophysics/postmortem",
-	"url": " https://rseng.github.io/software/repository/github/CavendishAstrophysics/postmortem",
-	"content": " Visibility data reduction and map making package from MRAO"
+	"github/babinyurii/recan": {
+	"id": "github/babinyurii/recan",
+	"title": "github/babinyurii/recan",
+	"url": " https://rseng.github.io/software/repository/github/babinyurii/recan",
+	"content": "genetic distance plotting for recombination events analysis"
 	},
-	"github/CavendishAstrophysics/anmap": {
-	"id": "github/CavendishAstrophysics/anmap",
-	"title": "github/CavendishAstrophysics/anmap",
-	"url": " https://rseng.github.io/software/repository/github/CavendishAstrophysics/anmap",
-	"content": "MRAO image and data analysis system"
+	"github/Krona/wiki": {
+	"id": "github/Krona/wiki",
+	"title": "github/Krona/wiki",
+	"url": " https://rseng.github.io/software/repository/github/Krona/wiki",
+	"content": "is a set of scripts to create Krona charts from several Bioinformatics tools as well as from text and XML files."
 	},
-	"github/tribshms/tRIBS": {
-	"id": "github/tribshms/tRIBS",
-	"title": "github/tribshms/tRIBS",
-	"url": " https://rseng.github.io/software/repository/github/tribshms/tRIBS",
-	"content": "TIN-based Real-time Integrated Basin Simulator (tRIBS) Distributed Hydrological Model"
+	"github/trchudley/pdemtools": {
+	"id": "github/trchudley/pdemtools",
+	"title": "github/trchudley/pdemtools",
+	"url": " https://rseng.github.io/software/repository/github/trchudley/pdemtools",
+	"content": "Conveniently search, download, and process ArcticDEM and REMA products"
 	},
-	"github/gsuissa/hardCORE": {
-	"id": "github/gsuissa/hardCORE",
-	"title": "github/gsuissa/hardCORE",
-	"url": " https://rseng.github.io/software/repository/github/gsuissa/hardCORE",
-	"content": "None"
+	"github/ulilautenschlager/crimp": {
+	"id": "github/ulilautenschlager/crimp",
+	"title": "github/ulilautenschlager/crimp",
+	"url": " https://rseng.github.io/software/repository/github/ulilautenschlager/crimp",
+	"content": "Cluster relabeling based on impurity minimization"
 	},
-	"github/sunnyvagnozzi/Braneworld-extra-dimensions": {
-	"id": "github/sunnyvagnozzi/Braneworld-extra-dimensions",
-	"title": "github/sunnyvagnozzi/Braneworld-extra-dimensions",
-	"url": " https://rseng.github.io/software/repository/github/sunnyvagnozzi/Braneworld-extra-dimensions",
+	"github/BMILAB/scLINE": {
+	"id": "github/BMILAB/scLINE",
+	"title": "github/BMILAB/scLINE",
+	"url": " https://rseng.github.io/software/repository/github/BMILAB/scLINE",
 	"content": "None"
 	},
-	"github/iAART/aart": {
-	"id": "github/iAART/aart",
-	"title": "github/iAART/aart",
-	"url": " https://rseng.github.io/software/repository/github/iAART/aart",
-	"content": "An adaptive analytical ray-tracing code to study black hole photon rings"
-	},
-	"github/nmslib/hnswlib": {
-	"id": "github/nmslib/hnswlib",
-	"title": "github/nmslib/hnswlib",
-	"url": " https://rseng.github.io/software/repository/github/nmslib/hnswlib",
-	"content": "Header-only C++/python library for fast approximate nearest neighbors"
+	"github/rauschenberger/joinet": {
+	"id": "github/rauschenberger/joinet",
+	"title": "github/rauschenberger/joinet",
+	"url": " https://rseng.github.io/software/repository/github/rauschenberger/joinet",
+	"content": "Multivariate Elastic Net Regression"
 	},
-	"github/krab1k/ChargeFW2": {
-	"id": "github/krab1k/ChargeFW2",
-	"title": "github/krab1k/ChargeFW2",
-	"url": " https://rseng.github.io/software/repository/github/krab1k/ChargeFW2",
-	"content": "The core part of Atomic Charge Calculator II."
+	"github/rauschenberger/transreg": {
+	"id": "github/rauschenberger/transreg",
+	"title": "github/rauschenberger/transreg",
+	"url": " https://rseng.github.io/software/repository/github/rauschenberger/transreg",
+	"content": "Transfer learning"
 	},
-	"github/matteozennaro/reps": {
-	"id": "github/matteozennaro/reps",
-	"title": "github/matteozennaro/reps",
-	"url": " https://rseng.github.io/software/repository/github/matteozennaro/reps",
-	"content": "REPS - rescaled power spectra for initial conditions with massive neutrinos"
+	"github/theia-dev/Qiber3D": {
+	"id": "github/theia-dev/Qiber3D",
+	"title": "github/theia-dev/Qiber3D",
+	"url": " https://rseng.github.io/software/repository/github/theia-dev/Qiber3D",
+	"content": "Automated quantification of fibrous networks"
 	},
-	"github/Degiacomi-Lab/molearn": {
-	"id": "github/Degiacomi-Lab/molearn",
-	"title": "github/Degiacomi-Lab/molearn",
-	"url": " https://rseng.github.io/software/repository/github/Degiacomi-Lab/molearn",
-	"content": "protein conformational spaces meet machine learning"
+	"github/esteinig/nanoq": {
+	"id": "github/esteinig/nanoq",
+	"title": "github/esteinig/nanoq",
+	"url": " https://rseng.github.io/software/repository/github/esteinig/nanoq",
+	"content": "Minimal but speedy quality control for nanopore reads in Rust :bear:"
 	},
-	"github/mrteetoe/HOI": {
-	"id": "github/mrteetoe/HOI",
-	"title": "github/mrteetoe/HOI",
-	"url": " https://rseng.github.io/software/repository/github/mrteetoe/HOI",
-	"content": "None"
+	"github/cau-se/ARCHES-PiCar-X": {
+	"id": "github/cau-se/ARCHES-PiCar-X",
+	"title": "github/cau-se/ARCHES-PiCar-X",
+	"url": " https://rseng.github.io/software/repository/github/cau-se/ARCHES-PiCar-X",
+	"content": "Software for digital twin research"
 	},
-	"github/Pas-Kapli/mptp": {
-	"id": "github/Pas-Kapli/mptp",
-	"title": "github/Pas-Kapli/mptp",
-	"url": " https://rseng.github.io/software/repository/github/Pas-Kapli/mptp",
-	"content": "mPTP - a tool for single-locus species delimitation"
+	"github/BGPS/distance-omnibus": {
+	"id": "github/BGPS/distance-omnibus",
+	"title": "github/BGPS/distance-omnibus",
+	"url": " https://rseng.github.io/software/repository/github/BGPS/distance-omnibus",
+	"content": "Distance estimation method for molecular cloud clumps in the Milky Way"
 	},
-	"github/radiocosmology/draco": {
-	"id": "github/radiocosmology/draco",
-	"title": "github/radiocosmology/draco",
-	"url": " https://rseng.github.io/software/repository/github/radiocosmology/draco",
-	"content": "A pipeline for the analysis and simulation of drift scan radio data"
+	"github/SNOwGLoBES/snowglobes": {
+	"id": "github/SNOwGLoBES/snowglobes",
+	"title": "github/SNOwGLoBES/snowglobes",
+	"url": " https://rseng.github.io/software/repository/github/SNOwGLoBES/snowglobes",
+	"content": "SNOwGLoBES code:  SuperNova Observatories with GLoBES"
 	},
-	"github/radiocosmology/caput": {
-	"id": "github/radiocosmology/caput",
-	"title": "github/radiocosmology/caput",
-	"url": " https://rseng.github.io/software/repository/github/radiocosmology/caput",
-	"content": "Cluster Astronomical Python Utilities"
+	"github/bids-standard/bids-validator": {
+	"id": "github/bids-standard/bids-validator",
+	"title": "github/bids-standard/bids-validator",
+	"url": " https://rseng.github.io/software/repository/github/bids-standard/bids-validator",
+	"content": "Validator for the Brain Imaging Data Structure"
 	},
-	"github/radiocosmology/driftscan": {
-	"id": "github/radiocosmology/driftscan",
-	"title": "github/radiocosmology/driftscan",
-	"url": " https://rseng.github.io/software/repository/github/radiocosmology/driftscan",
-	"content": "Data analysis of transit radio interferometers, particularly for 21cm cosmology."
+	"github/siavashk/pycpd": {
+	"id": "github/siavashk/pycpd",
+	"title": "github/siavashk/pycpd",
+	"url": " https://rseng.github.io/software/repository/github/siavashk/pycpd",
+	"content": "Pure Numpy Implementation of the Coherent Point Drift Algorithm"
 	},
-	"github/ipython/ipython": {
-	"id": "github/ipython/ipython",
-	"title": "github/ipython/ipython",
-	"url": " https://rseng.github.io/software/repository/github/ipython/ipython",
-	"content": "Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc."
+	"github/ahwkuepper/mcluster": {
+	"id": "github/ahwkuepper/mcluster",
+	"title": "github/ahwkuepper/mcluster",
+	"url": " https://rseng.github.io/software/repository/github/ahwkuepper/mcluster",
+	"content": "McLuster - a tool to make a star cluster"
 	},
-	"github/GeodynamicWorldBuilder/WorldBuilder": {
-	"id": "github/GeodynamicWorldBuilder/WorldBuilder",
-	"title": "github/GeodynamicWorldBuilder/WorldBuilder",
-	"url": " https://rseng.github.io/software/repository/github/GeodynamicWorldBuilder/WorldBuilder",
-	"content": "World Builder: An initial conditions generator for geodynamic modeling"
+	"github/FrederickHuangLin/ANCOMBC": {
+	"id": "github/FrederickHuangLin/ANCOMBC",
+	"title": "github/FrederickHuangLin/ANCOMBC",
+	"url": " https://rseng.github.io/software/repository/github/FrederickHuangLin/ANCOMBC",
+	"content": "Differential abundance (DA) and correlation analyses for microbial absolute abundance data"
 	},
-	"github/ExaScience/elprep": {
-	"id": "github/ExaScience/elprep",
-	"title": "github/ExaScience/elprep",
-	"url": " https://rseng.github.io/software/repository/github/ExaScience/elprep",
-	"content": "a high-performance tool for analyzing .sam/.bam files (up to and including variant calling) in sequencing pipelines."
+	"github/alejostark/phase_space_cosmo_fisher": {
+	"id": "github/alejostark/phase_space_cosmo_fisher",
+	"title": "github/alejostark/phase_space_cosmo_fisher",
+	"url": " https://rseng.github.io/software/repository/github/alejostark/phase_space_cosmo_fisher",
+	"content": "Code used to produce Fisher matrix contours in Stark, Miller Huterer 2016"
 	},
-	"github/AOtools/aotools": {
-	"id": "github/AOtools/aotools",
-	"title": "github/AOtools/aotools",
-	"url": " https://rseng.github.io/software/repository/github/AOtools/aotools",
-	"content": "A useful set of tools for Adaptive Optics in Python"
+	"github/vgteam/vg#vg": {
+	"id": "github/vgteam/vg#vg",
+	"title": "github/vgteam/vg#vg",
+	"url": " https://rseng.github.io/software/repository/github/vgteam/vg#vg",
+	"content": "tools for working with genome variation graphs"
 	},
-	"github/jonas-fuchs/varVAMP": {
-	"id": "github/jonas-fuchs/varVAMP",
-	"title": "github/jonas-fuchs/varVAMP",
-	"url": " https://rseng.github.io/software/repository/github/jonas-fuchs/varVAMP",
-	"content": "Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses."
+	"github/vgteam/vg": {
+	"id": "github/vgteam/vg",
+	"title": "github/vgteam/vg",
+	"url": " https://rseng.github.io/software/repository/github/vgteam/vg",
+	"content": "tools for working with genome variation graphs"
 	},
-	"github/WSWUP/agweather-qaqc": {
-	"id": "github/WSWUP/agweather-qaqc",
-	"title": "github/WSWUP/agweather-qaqc",
-	"url": " https://rseng.github.io/software/repository/github/WSWUP/agweather-qaqc",
-	"content": "Visualized QA/QC of weather station data"
+	"github/odb9402/CNNPeaks": {
+	"id": "github/odb9402/CNNPeaks",
+	"title": "github/odb9402/CNNPeaks",
+	"url": " https://rseng.github.io/software/repository/github/odb9402/CNNPeaks",
+	"content": "The ChIP-Seq peak calling algorithm using convolution neural networks"
 	},
-	"github/fritzsedlazeck/Sniffles": {
-	"id": "github/fritzsedlazeck/Sniffles",
-	"title": "github/fritzsedlazeck/Sniffles",
-	"url": " https://rseng.github.io/software/repository/github/fritzsedlazeck/Sniffles",
-	"content": "Structural variation caller using third generation sequencing"
+	"github/jfoster17/extinction-distances": {
+	"id": "github/jfoster17/extinction-distances",
+	"title": "github/jfoster17/extinction-distances",
+	"url": " https://rseng.github.io/software/repository/github/jfoster17/extinction-distances",
+	"content": "Code to implement the blue star number count method from Foster et al. (2012) http://adsabs.harvard.edu/abs/2012ApJ...751..157F"
 	},
-	"github/fritzsedlazeck/SURVIVOR": {
-	"id": "github/fritzsedlazeck/SURVIVOR",
-	"title": "github/fritzsedlazeck/SURVIVOR",
-	"url": " https://rseng.github.io/software/repository/github/fritzsedlazeck/SURVIVOR",
-	"content": "Toolset for SV simulation, comparison and filtering"
+	"github/nsoranzo/sspace_basic": {
+	"id": "github/nsoranzo/sspace_basic",
+	"title": "github/nsoranzo/sspace_basic",
+	"url": " https://rseng.github.io/software/repository/github/nsoranzo/sspace_basic",
+	"content": "SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension"
 	},
-	"github/rkingsbury/pyEQL": {
-	"id": "github/rkingsbury/pyEQL",
-	"title": "github/rkingsbury/pyEQL",
-	"url": " https://rseng.github.io/software/repository/github/rkingsbury/pyEQL",
-	"content": "A Python library for solution chemistry"
+	"github/AndreNicolasChene/DRAGRACES": {
+	"id": "github/AndreNicolasChene/DRAGRACES",
+	"title": "github/AndreNicolasChene/DRAGRACES",
+	"url": " https://rseng.github.io/software/repository/github/AndreNicolasChene/DRAGRACES",
+	"content": "Reduction pipeline for GRACES spectra (Gemini spectrograph)"
 	},
-	"github/Jammy2211/PyAutoLens": {
-	"id": "github/Jammy2211/PyAutoLens",
-	"title": "github/Jammy2211/PyAutoLens",
-	"url": " https://rseng.github.io/software/repository/github/Jammy2211/PyAutoLens",
-	"content": "PyAutoLens: Open Source Strong Gravitational Lensing"
+	"github/bwoshea/ZEUS-MP_2": {
+	"id": "github/bwoshea/ZEUS-MP_2",
+	"title": "github/bwoshea/ZEUS-MP_2",
+	"url": " https://rseng.github.io/software/repository/github/bwoshea/ZEUS-MP_2",
+	"content": "This repository is the home of the ZEUS-MP 2.0 code, which was created by John Hayes and others at the Laboratory for Computational Astrophysics at UIUC and UCSD."
 	},
-	"github/Jammy2211/PyAutoGalaxy": {
-	"id": "github/Jammy2211/PyAutoGalaxy",
-	"title": "github/Jammy2211/PyAutoGalaxy",
-	"url": " https://rseng.github.io/software/repository/github/Jammy2211/PyAutoGalaxy",
-	"content": "PyAutoGalaxy: Open-Source Multiwavelength Galaxy Structure &amp; Morphology"
+	"github/purmortal/galcraft": {
+	"id": "github/purmortal/galcraft",
+	"title": "github/purmortal/galcraft",
+	"url": " https://rseng.github.io/software/repository/github/purmortal/galcraft",
+	"content": "Mocking IFS data cube of the Milky Way"
 	},
-	"github/Jammy2211/PyAutoCTI": {
-	"id": "github/Jammy2211/PyAutoCTI",
-	"title": "github/Jammy2211/PyAutoCTI",
-	"url": " https://rseng.github.io/software/repository/github/Jammy2211/PyAutoCTI",
-	"content": "PyAutoCTI: Charge Transfer Inefficiency Calibration"
+	"github/amoradinejad/limHaloPT": {
+	"id": "github/amoradinejad/limHaloPT",
+	"title": "github/amoradinejad/limHaloPT",
+	"url": " https://rseng.github.io/software/repository/github/amoradinejad/limHaloPT",
+	"content": "The public repository of limHaloPT (master for the most recent version of the code)"
 	},
-	"github/kwkx/IPRP": {
-	"id": "github/kwkx/IPRP",
-	"title": "github/kwkx/IPRP",
-	"url": " https://rseng.github.io/software/repository/github/kwkx/IPRP",
-	"content": "The implement of IPRP and related nomograms."
+	"github/akleroy/phangs_imaging_scripts": {
+	"id": "github/akleroy/phangs_imaging_scripts",
+	"title": "github/akleroy/phangs_imaging_scripts",
+	"url": " https://rseng.github.io/software/repository/github/akleroy/phangs_imaging_scripts",
+	"content": "CASA+python imaging and product creation scripts for PHANGS-ALMA"
 	},
-	"github/SESMG/SESMG": {
-	"id": "github/SESMG/SESMG",
-	"title": "github/SESMG/SESMG",
-	"url": " https://rseng.github.io/software/repository/github/SESMG/SESMG",
-	"content": "Model generator for the optimization of energy systems, based on the modeling framework oemof. No programming skills are required to use it, as the parameters are entered using spreadsheets (e.g. Excel, LibreOffice)."
+	"github/xinglunju/pyAmor": {
+	"id": "github/xinglunju/pyAmor",
+	"title": "github/xinglunju/pyAmor",
+	"url": " https://rseng.github.io/software/repository/github/xinglunju/pyAmor",
+	"content": "python code to derive temperatures using Ammonia spectral lines"
 	},
-	"github/dparkins/CosmoNest": {
-	"id": "github/dparkins/CosmoNest",
-	"title": "github/dparkins/CosmoNest",
-	"url": " https://rseng.github.io/software/repository/github/dparkins/CosmoNest",
-	"content": "Cosmological Nested Sampling (to be used with cosmomc)"
+	"github/saopicc/DDFacet": {
+	"id": "github/saopicc/DDFacet",
+	"title": "github/saopicc/DDFacet",
+	"url": " https://rseng.github.io/software/repository/github/saopicc/DDFacet",
+	"content": "DDFacet Imaging Project"
 	},
-	"github/idaholab/moose": {
-	"id": "github/idaholab/moose",
-	"title": "github/idaholab/moose",
-	"url": " https://rseng.github.io/software/repository/github/idaholab/moose",
-	"content": "Multiphysics Object Oriented Simulation Environment"
+	"github/saopicc/killMS": {
+	"id": "github/saopicc/killMS",
+	"title": "github/saopicc/killMS",
+	"url": " https://rseng.github.io/software/repository/github/saopicc/killMS",
+	"content": "Package for direction dependent calibration"
 	},
-	"github/TPI-Immunogenetics/igmat": {
-	"id": "github/TPI-Immunogenetics/igmat",
-	"title": "github/TPI-Immunogenetics/igmat",
-	"url": " https://rseng.github.io/software/repository/github/TPI-Immunogenetics/igmat",
-	"content": "Antibody Multispecies Annotation Tool"
+	"github/NorwegianVeterinaryInstitute/ALPPACA": {
+	"id": "github/NorwegianVeterinaryInstitute/ALPPACA",
+	"title": "github/NorwegianVeterinaryInstitute/ALPPACA",
+	"url": " https://rseng.github.io/software/repository/github/NorwegianVeterinaryInstitute/ALPPACA",
+	"content": "A tooL for Prokaryotic Phylogeny And Clustering Analysis"
 	},
-	"github/sfschen/velocileptors": {
-	"id": "github/sfschen/velocileptors",
-	"title": "github/sfschen/velocileptors",
-	"url": " https://rseng.github.io/software/repository/github/sfschen/velocileptors",
-	"content": "A code for velocity-based Lagrangian and Eulerian PT expansions of redshift-space distortions."
+	"github/azizka/IUCNN": {
+	"id": "github/azizka/IUCNN",
+	"title": "github/azizka/IUCNN",
+	"url": " https://rseng.github.io/software/repository/github/azizka/IUCNN",
+	"content": " Train neural networks based on geographic species occurrences, environmental data and existing IUCN Red List assessments to predict the conservation status of &#34;Not Evaluated&#34; or &#34;Data Deficient&#34; species, for any taxon or geographic region of interest. https://iucnn.github.io/IUCNN/"
 	},
-	"github/astroml/gatspy": {
-	"id": "github/astroml/gatspy",
-	"title": "github/astroml/gatspy",
-	"url": " https://rseng.github.io/software/repository/github/astroml/gatspy",
-	"content": "General tools for Astronomical Time Series in Python"
+	"github/Single-Cell-Graph-Learning/scSGL": {
+	"id": "github/Single-Cell-Graph-Learning/scSGL",
+	"title": "github/Single-Cell-Graph-Learning/scSGL",
+	"url": " https://rseng.github.io/software/repository/github/Single-Cell-Graph-Learning/scSGL",
+	"content": "Signed Graph Learning for single cell RNA-seq data"
 	},
-	"github/changliao1025/pyflowline": {
-	"id": "github/changliao1025/pyflowline",
-	"title": "github/changliao1025/pyflowline",
-	"url": " https://rseng.github.io/software/repository/github/changliao1025/pyflowline",
-	"content": "A mesh independent river network generator for hydrologic models"
+	"github/murphycj/AGFusion": {
+	"id": "github/murphycj/AGFusion",
+	"title": "github/murphycj/AGFusion",
+	"url": " https://rseng.github.io/software/repository/github/murphycj/AGFusion",
+	"content": "Python package to annotate and visualize gene fusions."
 	},
-	"github/rochoa85/NTDHealth_Forms": {
-	"id": "github/rochoa85/NTDHealth_Forms",
-	"title": "github/rochoa85/NTDHealth_Forms",
-	"url": " https://rseng.github.io/software/repository/github/rochoa85/NTDHealth_Forms",
-	"content": "Based on the OpenMRS HTML Form Entry module, you can find in this github repository a set of forms personalized for neglected tropical virus, including clinical assesment, personal history and epidemiological data. "
+	"github/silx-kit/pyFAI": {
+	"id": "github/silx-kit/pyFAI",
+	"title": "github/silx-kit/pyFAI",
+	"url": " https://rseng.github.io/software/repository/github/silx-kit/pyFAI",
+	"content": "Fast Azimuthal Integration in Python"
 	},
-	"github/RuthAngus/SIPK2": {
-	"id": "github/RuthAngus/SIPK2",
-	"title": "github/RuthAngus/SIPK2",
-	"url": " https://rseng.github.io/software/repository/github/RuthAngus/SIPK2",
-	"content": "Systematics-Insensitive Periodograms for K2"
+	"github/faircloth-lab/phyluce": {
+	"id": "github/faircloth-lab/phyluce",
+	"title": "github/faircloth-lab/phyluce",
+	"url": " https://rseng.github.io/software/repository/github/faircloth-lab/phyluce",
+	"content": "software for UCE (and general) phylogenomics"
 	},
-	"github/RuthAngus/gprotation": {
-	"id": "github/RuthAngus/gprotation",
-	"title": "github/RuthAngus/gprotation",
-	"url": " https://rseng.github.io/software/repository/github/RuthAngus/gprotation",
-	"content": "Measuring stellar rotation periods with Gaussian processes"
+	"github/mgcooper/baseflow": {
+	"id": "github/mgcooper/baseflow",
+	"title": "github/mgcooper/baseflow",
+	"url": " https://rseng.github.io/software/repository/github/mgcooper/baseflow",
+	"content": "baseflow recession analysis toolbox"
 	},
-	"github/RuthAngus/stardate": {
-	"id": "github/RuthAngus/stardate",
-	"title": "github/RuthAngus/stardate",
-	"url": " https://rseng.github.io/software/repository/github/RuthAngus/stardate",
-	"content": "Combining dating methods for better stellar ages"
+	"github/AstraZeneca/kallisto": {
+	"id": "github/AstraZeneca/kallisto",
+	"title": "github/AstraZeneca/kallisto",
+	"url": " https://rseng.github.io/software/repository/github/AstraZeneca/kallisto",
+	"content": "Efficiently calculate 3D-atomic/molecular features for quantitative structure-activity relationship approaches."
 	},
-	"github/kritiyer/AngioNet": {
-	"id": "github/kritiyer/AngioNet",
-	"title": "github/kritiyer/AngioNet",
-	"url": " https://rseng.github.io/software/repository/github/kritiyer/AngioNet",
-	"content": "Semantic segmentation network for X-ray angiography images, based on Deeplabv3+"
+	"github/Astroua/SCIMES": {
+	"id": "github/Astroua/SCIMES",
+	"title": "github/Astroua/SCIMES",
+	"url": " https://rseng.github.io/software/repository/github/Astroua/SCIMES",
+	"content": "Spectral Clustering for Interstellar Molecular Emission Segmentation"
 	},
-	"github/bulik/ldsc": {
-	"id": "github/bulik/ldsc",
-	"title": "github/bulik/ldsc",
-	"url": " https://rseng.github.io/software/repository/github/bulik/ldsc",
-	"content": "LD Score Regression (LDSC)"
+	"github/Astroua/TurbuStat": {
+	"id": "github/Astroua/TurbuStat",
+	"title": "github/Astroua/TurbuStat",
+	"url": " https://rseng.github.io/software/repository/github/Astroua/TurbuStat",
+	"content": "Statistics of Turbulence Python Package"
 	},
-	"github/PMBio/peer": {
-	"id": "github/PMBio/peer",
-	"title": "github/PMBio/peer",
-	"url": " https://rseng.github.io/software/repository/github/PMBio/peer",
-	"content": "A factor analysis package"
+	"github/ClapeyronThermo/GCIdentifier.jl": {
+	"id": "github/ClapeyronThermo/GCIdentifier.jl",
+	"title": "github/ClapeyronThermo/GCIdentifier.jl",
+	"url": " https://rseng.github.io/software/repository/github/ClapeyronThermo/GCIdentifier.jl",
+	"content": "tools to perform group contribution (GC) identification, given the SMILES of a compound"
 	},
-	"github/PMBio/spatialde2-paper": {
-	"id": "github/PMBio/spatialde2-paper",
-	"title": "github/PMBio/spatialde2-paper",
-	"url": " https://rseng.github.io/software/repository/github/PMBio/spatialde2-paper",
-	"content": "Code to reproduce the figures (data not included)"
+	"github/Starfish-develop/Starfish": {
+	"id": "github/Starfish-develop/Starfish",
+	"title": "github/Starfish-develop/Starfish",
+	"url": " https://rseng.github.io/software/repository/github/Starfish-develop/Starfish",
+	"content": "Tools for Flexible Spectroscopic Inference"
 	},
-	"github/grburgess/popsynth": {
-	"id": "github/grburgess/popsynth",
-	"title": "github/grburgess/popsynth",
-	"url": " https://rseng.github.io/software/repository/github/grburgess/popsynth",
-	"content": "A generic flux/parameter population synthesis code"
+	"github/rabrahm/zaspe": {
+	"id": "github/rabrahm/zaspe",
+	"title": "github/rabrahm/zaspe",
+	"url": " https://rseng.github.io/software/repository/github/rabrahm/zaspe",
+	"content": "A Code to Measure Stellar Atmospheric Parameters and their Covariance from Spectra"
 	},
-	"github/grburgess/ronswanson": {
-	"id": "github/grburgess/ronswanson",
-	"title": "github/grburgess/ronswanson",
-	"url": " https://rseng.github.io/software/repository/github/grburgess/ronswanson",
-	"content": "Ron Swanson builds tables for 3ML"
+	"github/rabrahm/ceres": {
+	"id": "github/rabrahm/ceres",
+	"title": "github/rabrahm/ceres",
+	"url": " https://rseng.github.io/software/repository/github/rabrahm/ceres",
+	"content": "A set of pipelines and routines for echelle spectrographs"
 	},
-	"github/ahmedmoustafa/JAligner": {
-	"id": "github/ahmedmoustafa/JAligner",
-	"title": "github/ahmedmoustafa/JAligner",
-	"url": " https://rseng.github.io/software/repository/github/ahmedmoustafa/JAligner",
-	"content": "Biological Sequence Alignment"
+	"github/matiscke/lcps": {
+	"id": "github/matiscke/lcps",
+	"title": "github/matiscke/lcps",
+	"url": " https://rseng.github.io/software/repository/github/matiscke/lcps",
+	"content": "A tool for pre-selecting light curves with possible transit signatures"
 	},
-	"github/BirkhoffG/jax-relax": {
-	"id": "github/BirkhoffG/jax-relax",
-	"title": "github/BirkhoffG/jax-relax",
-	"url": " https://rseng.github.io/software/repository/github/BirkhoffG/jax-relax",
-	"content": "Recourse Explanation Library in JAX"
+	"github/jtschindler/sculptor": {
+	"id": "github/jtschindler/sculptor",
+	"title": "github/jtschindler/sculptor",
+	"url": " https://rseng.github.io/software/repository/github/jtschindler/sculptor",
+	"content": "Sculptor - Interactive modeling of (electromagnetic) astronomical spectra."
 	},
-	"github/dutilh/CAT": {
-	"id": "github/dutilh/CAT",
-	"title": "github/dutilh/CAT",
-	"url": " https://rseng.github.io/software/repository/github/dutilh/CAT",
-	"content": "CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)"
+	"github/trivnguyen/florah": {
+	"id": "github/trivnguyen/florah",
+	"title": "github/trivnguyen/florah",
+	"url": " https://rseng.github.io/software/repository/github/trivnguyen/florah",
+	"content": "Generate galaxy merger tree with machine learning"
 	},
-	"github/scrm/scrmhub.io": {
-	"id": "github/scrm/scrmhub.io",
-	"title": "github/scrm/scrmhub.io",
-	"url": " https://rseng.github.io/software/repository/github/scrm/scrmhub.io",
-	"content": "a coalescent simulator for biological sequences."
+	"github/pysat/pysat": {
+	"id": "github/pysat/pysat",
+	"title": "github/pysat/pysat",
+	"url": " https://rseng.github.io/software/repository/github/pysat/pysat",
+	"content": "Generalized satellite and space science data processing and file management. "
 	},
-	"github/mne-tools/mne-icalabel": {
-	"id": "github/mne-tools/mne-icalabel",
-	"title": "github/mne-tools/mne-icalabel",
-	"url": " https://rseng.github.io/software/repository/github/mne-tools/mne-icalabel",
-	"content": "Automatic labeling of ICA components in Python."
+	"github/NeotomaDB/neotoma2": {
+	"id": "github/NeotomaDB/neotoma2",
+	"title": "github/NeotomaDB/neotoma2",
+	"url": " https://rseng.github.io/software/repository/github/NeotomaDB/neotoma2",
+	"content": "Repository for the updated neotoma R package."
 	},
-	"github/mne-tools/mne-python": {
-	"id": "github/mne-tools/mne-python",
-	"title": "github/mne-tools/mne-python",
-	"url": " https://rseng.github.io/software/repository/github/mne-tools/mne-python",
-	"content": "MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python"
+	"github/ttgump/scDeepCluster_pytorch": {
+	"id": "github/ttgump/scDeepCluster_pytorch",
+	"title": "github/ttgump/scDeepCluster_pytorch",
+	"url": " https://rseng.github.io/software/repository/github/ttgump/scDeepCluster_pytorch",
+	"content": "Pytorch implementation of scDeepCluster for Single Cell RNA-seq data"
 	},
-	"github/GeoffDuniam/FITS-Code-Examples": {
-	"id": "github/GeoffDuniam/FITS-Code-Examples",
-	"title": "github/GeoffDuniam/FITS-Code-Examples",
-	"url": " https://rseng.github.io/software/repository/github/GeoffDuniam/FITS-Code-Examples",
-	"content": "Jupyter notes books and code examples for the FITS data modelling paper"
+	"github/ttgump/scDHMap": {
+	"id": "github/ttgump/scDHMap",
+	"title": "github/ttgump/scDHMap",
+	"url": " https://rseng.github.io/software/repository/github/ttgump/scDHMap",
+	"content": "Model-based deep hyperbolic manifold learning for visualizing complex hierarchical structures in single-cell genomics data"
 	},
-	"github/moble/GWFrames": {
-	"id": "github/moble/GWFrames",
-	"title": "github/moble/GWFrames",
-	"url": " https://rseng.github.io/software/repository/github/moble/GWFrames",
-	"content": "Manipulate gravitational waveforms—changing frames, and so on."
+	"github/benedictpaten/marginPhase": {
+	"id": "github/benedictpaten/marginPhase",
+	"title": "github/benedictpaten/marginPhase",
+	"url": " https://rseng.github.io/software/repository/github/benedictpaten/marginPhase",
+	"content": "simultaneous haplotyping and genotyping"
 	},
-	"github/moble/scri": {
-	"id": "github/moble/scri",
-	"title": "github/moble/scri",
-	"url": " https://rseng.github.io/software/repository/github/moble/scri",
-	"content": "Python/numba code for manipulating time-dependent functions of spin-weighted spherical harmonics"
+	"github/ChrisBeaumont/brut": {
+	"id": "github/ChrisBeaumont/brut",
+	"title": "github/ChrisBeaumont/brut",
+	"url": " https://rseng.github.io/software/repository/github/ChrisBeaumont/brut",
+	"content": "Machine Learning on the Milky Way Project DR1"
 	},
-	"github/vcflib/bio-vcf": {
-	"id": "github/vcflib/bio-vcf",
-	"title": "github/vcflib/bio-vcf",
-	"url": " https://rseng.github.io/software/repository/github/vcflib/bio-vcf",
-	"content": "Smart VCF parser DSL"
+	"github/dmey/synthia": {
+	"id": "github/dmey/synthia",
+	"title": "github/dmey/synthia",
+	"url": " https://rseng.github.io/software/repository/github/dmey/synthia",
+	"content": "📈 🐍 Multidimensional synthetic data generation in Python"
 	},
-	"github/vcflib/vcflib": {
-	"id": "github/vcflib/vcflib",
-	"title": "github/vcflib/vcflib",
-	"url": " https://rseng.github.io/software/repository/github/vcflib/vcflib",
-	"content": " C++ library and cmdline tools for parsing and manipulating VCF files"
+	"github/cdfortenbach/JET": {
+	"id": "github/cdfortenbach/JET",
+	"title": "github/cdfortenbach/JET",
+	"url": " https://rseng.github.io/software/repository/github/cdfortenbach/JET",
+	"content": "Computer tool that can be used to optimize lists of exoplanet targets for atmospheric characterization by JWST."
 	},
-	"github/deezer/spleeter": {
-	"id": "github/deezer/spleeter",
-	"title": "github/deezer/spleeter",
-	"url": " https://rseng.github.io/software/repository/github/deezer/spleeter",
-	"content": "Deezer source separation library including pretrained models."
+	"github/sisl/PyroRL": {
+	"id": "github/sisl/PyroRL",
+	"title": "github/sisl/PyroRL",
+	"url": " https://rseng.github.io/software/repository/github/sisl/PyroRL",
+	"content": "An RL environment made for wildfire evacuation."
 	},
-	"github/Bahler-Lab/pyphe": {
-	"id": "github/Bahler-Lab/pyphe",
-	"title": "github/Bahler-Lab/pyphe",
-	"url": " https://rseng.github.io/software/repository/github/Bahler-Lab/pyphe",
-	"content": "Python toolbox for phenotype analysis of arrayed microbial colonies"
+	"github/sisl/ExpFamilyPCA.jl": {
+	"id": "github/sisl/ExpFamilyPCA.jl",
+	"title": "github/sisl/ExpFamilyPCA.jl",
+	"url": " https://rseng.github.io/software/repository/github/sisl/ExpFamilyPCA.jl",
+	"content": "A Julia package for exponential family principal component analysis (EPCA)."
 	},
-	"github/koszullab/pareidolia": {
-	"id": "github/koszullab/pareidolia",
-	"title": "github/koszullab/pareidolia",
-	"url": " https://rseng.github.io/software/repository/github/koszullab/pareidolia",
-	"content": "Multi-sample change detection in Hi-C patterns"
+	"github/sisl/POMDPStressTesting.jl": {
+	"id": "github/sisl/POMDPStressTesting.jl",
+	"title": "github/sisl/POMDPStressTesting.jl",
+	"url": " https://rseng.github.io/software/repository/github/sisl/POMDPStressTesting.jl",
+	"content": "Adaptive stress testing of black-box systems within POMDPs.jl"
 	},
-	"github/henrikju/resolve": {
-	"id": "github/henrikju/resolve",
-	"title": "github/henrikju/resolve",
-	"url": " https://rseng.github.io/software/repository/github/henrikju/resolve",
-	"content": "A Bayesian radio aperture synthesis algorithm."
+	"github/WMD-group/Eris": {
+	"id": "github/WMD-group/Eris",
+	"title": "github/WMD-group/Eris",
+	"url": " https://rseng.github.io/software/repository/github/WMD-group/Eris",
+	"content": "Monte Carlo codes to simulate cation disorder in kesterite semiconductors"
 	},
-	"github/HuttleyLab/scitrack": {
-	"id": "github/HuttleyLab/scitrack",
-	"title": "github/HuttleyLab/scitrack",
-	"url": " https://rseng.github.io/software/repository/github/HuttleyLab/scitrack",
-	"content": "library aimed at scientists who want a simple tool to help log research computations"
+	"github/WMD-group/CarrierCapture.jl": {
+	"id": "github/WMD-group/CarrierCapture.jl",
+	"title": "github/WMD-group/CarrierCapture.jl",
+	"url": " https://rseng.github.io/software/repository/github/WMD-group/CarrierCapture.jl",
+	"content": "Package to compute trap-assisted electron and hole capture in semiconducting compounds"
 	},
-	"github/stermzsofi/TiDE": {
-	"id": "github/stermzsofi/TiDE",
-	"title": "github/stermzsofi/TiDE",
-	"url": " https://rseng.github.io/software/repository/github/stermzsofi/TiDE",
-	"content": "None"
+	"github/WMD-group/SMACT": {
+	"id": "github/WMD-group/SMACT",
+	"title": "github/WMD-group/SMACT",
+	"url": " https://rseng.github.io/software/repository/github/WMD-group/SMACT",
+	"content": "Python package to aid materials design"
 	},
-	"github/HERA-Team/matvis": {
-	"id": "github/HERA-Team/matvis",
-	"title": "github/HERA-Team/matvis",
-	"url": " https://rseng.github.io/software/repository/github/HERA-Team/matvis",
-	"content": "Fast matrix-based visibility simulator"
+	"github/WMD-group/hybrid-perovskites": {
+	"id": "github/WMD-group/hybrid-perovskites",
+	"title": "github/WMD-group/hybrid-perovskites",
+	"url": " https://rseng.github.io/software/repository/github/WMD-group/hybrid-perovskites",
+	"content": "DFT optimised crystal structures of inorganic and hybrid halide perovskites"
 	},
-	"github/HERA-Team/hera_opm": {
-	"id": "github/HERA-Team/hera_opm",
-	"title": "github/HERA-Team/hera_opm",
-	"url": " https://rseng.github.io/software/repository/github/HERA-Team/hera_opm",
-	"content": "Online processing of HERA data"
+	"github/WMD-group/MacroDensity": {
+	"id": "github/WMD-group/MacroDensity",
+	"title": "github/WMD-group/MacroDensity",
+	"url": " https://rseng.github.io/software/repository/github/WMD-group/MacroDensity",
+	"content": "Analyse electron density &amp; potential grids using Python"
 	},
-	"github/HERA-Team/aipy": {
-	"id": "github/HERA-Team/aipy",
-	"title": "github/HERA-Team/aipy",
-	"url": " https://rseng.github.io/software/repository/github/HERA-Team/aipy",
-	"content": "Astronomical Interferometry in PYthon (AIPY)"
+	"github/WMD-group/StarryNight": {
+	"id": "github/WMD-group/StarryNight",
+	"title": "github/WMD-group/StarryNight",
+	"url": " https://rseng.github.io/software/repository/github/WMD-group/StarryNight",
+	"content": "Monte Carlo codes to simulate polar domains in hybrid perovskite solar cells"
 	},
-	"github/vocalpy/crowsetta": {
-	"id": "github/vocalpy/crowsetta",
-	"title": "github/vocalpy/crowsetta",
-	"url": " https://rseng.github.io/software/repository/github/vocalpy/crowsetta",
-	"content": "A tool to work with any format for annotating vocalizations"
+	"github/Merck/BioPhi": {
+	"id": "github/Merck/BioPhi",
+	"title": "github/Merck/BioPhi",
+	"url": " https://rseng.github.io/software/repository/github/Merck/BioPhi",
+	"content": "BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design."
 	},
-	"github/statgen/popscle": {
-	"id": "github/statgen/popscle",
-	"title": "github/statgen/popscle",
-	"url": " https://rseng.github.io/software/repository/github/statgen/popscle",
-	"content": "A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools"
+	"github/Merck/pkglite": {
+	"id": "github/Merck/pkglite",
+	"title": "github/Merck/pkglite",
+	"url": " https://rseng.github.io/software/repository/github/Merck/pkglite",
+	"content": "Compact Package Representations"
 	},
-	"github/statgen/Minimac4": {
-	"id": "github/statgen/Minimac4",
-	"title": "github/statgen/Minimac4",
-	"url": " https://rseng.github.io/software/repository/github/statgen/Minimac4",
-	"content": "a lower memory and more computationally efficient implementation of the genotype imputation algorithms in minimac/mininac2/minimac3."
+	"github/datalad/datalad": {
+	"id": "github/datalad/datalad",
+	"title": "github/datalad/datalad",
+	"url": " https://rseng.github.io/software/repository/github/datalad/datalad",
+	"content": "Keep code, data, containers under control with git  and git-annex"
 	},
-	"github/statgen/demuxlet": {
-	"id": "github/statgen/demuxlet",
-	"title": "github/statgen/demuxlet",
-	"url": " https://rseng.github.io/software/repository/github/statgen/demuxlet",
-	"content": "Genetic multiplexing of barcoded single cell RNA-seq"
+	"github/mgieles/limepy": {
+	"id": "github/mgieles/limepy",
+	"title": "github/mgieles/limepy",
+	"url": " https://rseng.github.io/software/repository/github/mgieles/limepy",
+	"content": "Lowered Isothermal Model Explorer in Python"
 	},
-	"github/vijayvarma392/binaryBHexp": {
-	"id": "github/vijayvarma392/binaryBHexp",
-	"title": "github/vijayvarma392/binaryBHexp",
-	"url": " https://rseng.github.io/software/repository/github/vijayvarma392/binaryBHexp",
-	"content": "The binary Black Hole explorer (visualizations)"
+	"github/solislemuslab/minaa": {
+	"id": "github/solislemuslab/minaa",
+	"title": "github/solislemuslab/minaa",
+	"url": " https://rseng.github.io/software/repository/github/solislemuslab/minaa",
+	"content": "MiNAA aligns a pair of networks based their topologies and biologies."
 	},
-	"github/HWang-Summit/HCGrid": {
-	"id": "github/HWang-Summit/HCGrid",
-	"title": "github/HWang-Summit/HCGrid",
-	"url": " https://rseng.github.io/software/repository/github/HWang-Summit/HCGrid",
-	"content": "HCGrid is a convolution-based gridding framework for radio astronomy on hybrid computing environments"
+	"github/jlenain/flaapluc": {
+	"id": "github/jlenain/flaapluc",
+	"title": "github/jlenain/flaapluc",
+	"url": " https://rseng.github.io/software/repository/github/jlenain/flaapluc",
+	"content": "Dirty but quick Fermi-LAT analysis"
 	},
-	"github/AndreaCaldiroli/ATES-Code": {
-	"id": "github/AndreaCaldiroli/ATES-Code",
-	"title": "github/AndreaCaldiroli/ATES-Code",
-	"url": " https://rseng.github.io/software/repository/github/AndreaCaldiroli/ATES-Code",
-	"content": "The ATES hydrodynamics code computes the temperature, density, velocity and ionization fraction profiles of highly irradiated planetary atmospheres, along with the current, steady-state mass loss rate. ATES solves the one-dimensional Euler, mass and energy conservation equations in radial coordinates through a finite-volume scheme. The hydrodynamics module is paired with a photoionization equilibrium solver that includes cooling via bremsstrahlung, recombination and collisional excitation/ionization for the case of an atmosphere of primordial composition (i.e., pure atomic hydrogen-helium), while also accounting for advection of the different ion species."
+	"github/wuzhenao/CPPLS-MLP": {
+	"id": "github/wuzhenao/CPPLS-MLP",
+	"title": "github/wuzhenao/CPPLS-MLP",
+	"url": " https://rseng.github.io/software/repository/github/wuzhenao/CPPLS-MLP",
+	"content": "None"
 	},
-	"github/tschad/pycelp": {
-	"id": "github/tschad/pycelp",
-	"title": "github/tschad/pycelp",
-	"url": " https://rseng.github.io/software/repository/github/tschad/pycelp",
-	"content": "a Python package for Coronal Emission Line Polarization "
+	"github/SwissClinicalTrialOrganisation/secuTrialR": {
+	"id": "github/SwissClinicalTrialOrganisation/secuTrialR",
+	"title": "github/SwissClinicalTrialOrganisation/secuTrialR",
+	"url": " https://rseng.github.io/software/repository/github/SwissClinicalTrialOrganisation/secuTrialR",
+	"content": "Handling of data from the clinical data management system secuTrial"
 	},
-	"github/aaryapatil/tapify": {
-	"id": "github/aaryapatil/tapify",
-	"title": "github/aaryapatil/tapify",
-	"url": " https://rseng.github.io/software/repository/github/aaryapatil/tapify",
-	"content": "Multitaper spectrum for time-series analysis"
+	"github/brainglobe/bg-atlasapi": {
+	"id": "github/brainglobe/bg-atlasapi",
+	"title": "github/brainglobe/bg-atlasapi",
+	"url": " https://rseng.github.io/software/repository/github/brainglobe/bg-atlasapi",
+	"content": "A lightweight python module to interact with atlases for systems neuroscience"
 	},
-	"github/GijsMulders/epos": {
-	"id": "github/GijsMulders/epos",
-	"title": "github/GijsMulders/epos",
-	"url": " https://rseng.github.io/software/repository/github/GijsMulders/epos",
-	"content": "Exoplanet Population Observation Simulator"
+	"github/zgazak/TAP": {
+	"id": "github/zgazak/TAP",
+	"title": "github/zgazak/TAP",
+	"url": " https://rseng.github.io/software/repository/github/zgazak/TAP",
+	"content": "Transit Analysis Package for IDL"
 	},
-	"github/FabioRigamonti/pyADfit": {
-	"id": "github/FabioRigamonti/pyADfit",
-	"title": "github/FabioRigamonti/pyADfit",
-	"url": " https://rseng.github.io/software/repository/github/FabioRigamonti/pyADfit",
-	"content": "A nested sampling approach to QSO accretion disc fitting."
+	"github/CoLRev-Environment/bib-dedupe": {
+	"id": "github/CoLRev-Environment/bib-dedupe",
+	"title": "github/CoLRev-Environment/bib-dedupe",
+	"url": " https://rseng.github.io/software/repository/github/CoLRev-Environment/bib-dedupe",
+	"content": "None"
 	},
-	"github/vidakris/flatwrm": {
-	"id": "github/vidakris/flatwrm",
-	"title": "github/vidakris/flatwrm",
-	"url": " https://rseng.github.io/software/repository/github/vidakris/flatwrm",
-	"content": "Python-based machine learning code for detecting and analyzing flares"
+	"github/SebOliver/PCA": {
+	"id": "github/SebOliver/PCA",
+	"title": "github/SebOliver/PCA",
+	"url": " https://rseng.github.io/software/repository/github/SebOliver/PCA",
+	"content": "The folders in this file are those discussed in the paper: &#34;Principal Component Analysis and Radiative Transfer modelling of Spitzer IRS Spectra of Ultra Luminous Infrared Galaxies &#34; Hurley et al. 2012 Monthly Notices of the Royal Astronomical Society, 424 (3). pp. 2069-2078. ISSN 0035-8711 "
 	},
-	"github/moldyn/msmhelper": {
-	"id": "github/moldyn/msmhelper",
-	"title": "github/moldyn/msmhelper",
-	"url": " https://rseng.github.io/software/repository/github/moldyn/msmhelper",
-	"content": "Helper function for Markov State Models"
+	"github/wanpinglee/MOSAIK": {
+	"id": "github/wanpinglee/MOSAIK",
+	"title": "github/wanpinglee/MOSAIK",
+	"url": " https://rseng.github.io/software/repository/github/wanpinglee/MOSAIK",
+	"content": "reference-guided aligner for next-generation sequencing technologies"
 	},
-	"github/JustinYKC/FEPOPS": {
-	"id": "github/JustinYKC/FEPOPS",
-	"title": "github/JustinYKC/FEPOPS",
-	"url": " https://rseng.github.io/software/repository/github/JustinYKC/FEPOPS",
-	"content": "Python implementation of the FEPOPS molecular descriptors"
+	"github/yongsukyee/uncertain_blackholemass": {
+	"id": "github/yongsukyee/uncertain_blackholemass",
+	"title": "github/yongsukyee/uncertain_blackholemass",
+	"url": " https://rseng.github.io/software/repository/github/yongsukyee/uncertain_blackholemass",
+	"content": "Uncertainty quantification of black hole mass estimation"
 	},
-	"github/ShaunFell/GRBoondi": {
-	"id": "github/ShaunFell/GRBoondi",
-	"title": "github/ShaunFell/GRBoondi",
-	"url": " https://rseng.github.io/software/repository/github/ShaunFell/GRBoondi",
-	"content": "An AMR-based open source code to evolve generalized Proca fields on arbitrary fixed backgrounds"
+	"github/igvteam/igv-reports": {
+	"id": "github/igvteam/igv-reports",
+	"title": "github/igvteam/igv-reports",
+	"url": " https://rseng.github.io/software/repository/github/igvteam/igv-reports",
+	"content": "Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files."
 	},
-	"github/BioHPC/MegaD": {
-	"id": "github/BioHPC/MegaD",
-	"title": "github/BioHPC/MegaD",
-	"url": " https://rseng.github.io/software/repository/github/BioHPC/MegaD",
-	"content": "Deep learning for metagenomic sample classification"
+	"github/jmejia8/Metaheuristics.jl": {
+	"id": "github/jmejia8/Metaheuristics.jl",
+	"title": "github/jmejia8/Metaheuristics.jl",
+	"url": " https://rseng.github.io/software/repository/github/jmejia8/Metaheuristics.jl",
+	"content": "High-performance metaheuristics for optimization coded purely in Julia."
 	},
-	"github/flemingtonlab/SpliceV": {
-	"id": "github/flemingtonlab/SpliceV",
-	"title": "github/flemingtonlab/SpliceV",
-	"url": " https://rseng.github.io/software/repository/github/flemingtonlab/SpliceV",
-	"content": "Visualize coverage, canonical, and backsplice junctions."
+	"github/graphnet-team/graphnet": {
+	"id": "github/graphnet-team/graphnet",
+	"title": "github/graphnet-team/graphnet",
+	"url": " https://rseng.github.io/software/repository/github/graphnet-team/graphnet",
+	"content": "Graph neural networks for neutrino telescope event reconstruction"
 	},
-	"github/schochastics/signnet": {
-	"id": "github/schochastics/signnet",
-	"title": "github/schochastics/signnet",
-	"url": " https://rseng.github.io/software/repository/github/schochastics/signnet",
-	"content": "R package for signed networks"
+	"github/FergusDonnan/PyROA": {
+	"id": "github/FergusDonnan/PyROA",
+	"title": "github/FergusDonnan/PyROA",
+	"url": " https://rseng.github.io/software/repository/github/FergusDonnan/PyROA",
+	"content": "None"
 	},
-	"github/schochastics/graphlayouts": {
-	"id": "github/schochastics/graphlayouts",
-	"title": "github/schochastics/graphlayouts",
-	"url": " https://rseng.github.io/software/repository/github/schochastics/graphlayouts",
-	"content": "new layout algorithms for network visualizations in R"
+	"github/FergusDonnan/PAHDecomp": {
+	"id": "github/FergusDonnan/PAHDecomp",
+	"title": "github/FergusDonnan/PAHDecomp",
+	"url": " https://rseng.github.io/software/repository/github/FergusDonnan/PAHDecomp",
+	"content": "None"
 	},
-	"github/schochastics/netrankr": {
-	"id": "github/schochastics/netrankr",
-	"title": "github/schochastics/netrankr",
-	"url": " https://rseng.github.io/software/repository/github/schochastics/netrankr",
-	"content": "An R package for network centrality"
+	"github/FergusDonnan/Running-Optimal-Average": {
+	"id": "github/FergusDonnan/Running-Optimal-Average",
+	"title": "github/FergusDonnan/Running-Optimal-Average",
+	"url": " https://rseng.github.io/software/repository/github/FergusDonnan/Running-Optimal-Average",
+	"content": "None"
 	},
-	"github/tgrimes/SeqNet": {
-	"id": "github/tgrimes/SeqNet",
-	"title": "github/tgrimes/SeqNet",
-	"url": " https://rseng.github.io/software/repository/github/tgrimes/SeqNet",
-	"content": "An R package for simulating RNA-sequence datasets from regulatory networks"
+	"github/madysonb/EVA": {
+	"id": "github/madysonb/EVA",
+	"title": "github/madysonb/EVA",
+	"url": " https://rseng.github.io/software/repository/github/madysonb/EVA",
+	"content": "Calculate group age using Gaia excess uncertainties"
 	},
-	"github/henrycousins/gspa": {
-	"id": "github/henrycousins/gspa",
-	"title": "github/henrycousins/gspa",
-	"url": " https://rseng.github.io/software/repository/github/henrycousins/gspa",
-	"content": "Python implementation of gene set proximity analysis"
+	"github/ants-project/ANTs": {
+	"id": "github/ants-project/ANTs",
+	"title": "github/ants-project/ANTs",
+	"url": " https://rseng.github.io/software/repository/github/ants-project/ANTs",
+	"content": "None"
 	},
-	"github/mrc-ide/ring": {
-	"id": "github/mrc-ide/ring",
-	"title": "github/mrc-ide/ring",
-	"url": " https://rseng.github.io/software/repository/github/mrc-ide/ring",
-	"content": ":ring: Ring buffers"
+	"github/raredd/kmdata": {
+	"id": "github/raredd/kmdata",
+	"title": "github/raredd/kmdata",
+	"url": " https://rseng.github.io/software/repository/github/raredd/kmdata",
+	"content": "kmdata: A Database of Reconstructed Individual Patient Level Data from 153 Oncology Clinical trials"
 	},
-	"github/mrc-ide/covid-sim": {
-	"id": "github/mrc-ide/covid-sim",
-	"title": "github/mrc-ide/covid-sim",
-	"url": " https://rseng.github.io/software/repository/github/mrc-ide/covid-sim",
-	"content": "This is the COVID-19 CovidSim microsimulation model developed by the MRC Centre for Global Infectious Disease Analysis hosted at Imperial College, London."
+	"github/valboz/VBBinaryLensing": {
+	"id": "github/valboz/VBBinaryLensing",
+	"title": "github/valboz/VBBinaryLensing",
+	"url": " https://rseng.github.io/software/repository/github/valboz/VBBinaryLensing",
+	"content": "Microlensing light curve calculation"
 	},
-	"github/mrc-ide/sircovid": {
-	"id": "github/mrc-ide/sircovid",
-	"title": "github/mrc-ide/sircovid",
-	"url": " https://rseng.github.io/software/repository/github/mrc-ide/sircovid",
-	"content": "None"
+	"github/OFFIS-DAI/Mango.jl": {
+	"id": "github/OFFIS-DAI/Mango.jl",
+	"title": "github/OFFIS-DAI/Mango.jl",
+	"url": " https://rseng.github.io/software/repository/github/OFFIS-DAI/Mango.jl",
+	"content": "Modular Julia-based agent framework to implement multi-agent systems"
 	},
-	"github/mrc-ide/cinterpolate": {
-	"id": "github/mrc-ide/cinterpolate",
-	"title": "github/mrc-ide/cinterpolate",
-	"url": " https://rseng.github.io/software/repository/github/mrc-ide/cinterpolate",
-	"content": ":bar_chart::arrow_right::wavy_dash: Interpolating functions from C, in R"
+	"github/samb8s/PsrPopPy": {
+	"id": "github/samb8s/PsrPopPy",
+	"title": "github/samb8s/PsrPopPy",
+	"url": " https://rseng.github.io/software/repository/github/samb8s/PsrPopPy",
+	"content": "Python implementation of PSRPOP, designed to be run from the command line or from Python scripts/interpreter"
 	},
-	"github/mrc-ide/PhyDyn": {
-	"id": "github/mrc-ide/PhyDyn",
-	"title": "github/mrc-ide/PhyDyn",
-	"url": " https://rseng.github.io/software/repository/github/mrc-ide/PhyDyn",
-	"content": "PhyDyn: Epidemiological modelling in BEAST"
+	"github/AnitaPetzler/AMOEBA": {
+	"id": "github/AnitaPetzler/AMOEBA",
+	"title": "github/AnitaPetzler/AMOEBA",
+	"url": " https://rseng.github.io/software/repository/github/AnitaPetzler/AMOEBA",
+	"content": "Automated Molecular Excitation Bayesian line-fitting Algorithm"
 	},
-	"github/mrc-ide/covid19-forecasts-orderly": {
-	"id": "github/mrc-ide/covid19-forecasts-orderly",
-	"title": "github/mrc-ide/covid19-forecasts-orderly",
-	"url": " https://rseng.github.io/software/repository/github/mrc-ide/covid19-forecasts-orderly",
-	"content": "None"
+	"github/agordon/fastx_toolkit": {
+	"id": "github/agordon/fastx_toolkit",
+	"title": "github/agordon/fastx_toolkit",
+	"url": " https://rseng.github.io/software/repository/github/agordon/fastx_toolkit",
+	"content": "FASTA/FASTQ pre-processing programs"
 	},
-	"github/mrc-ide/provisionr": {
-	"id": "github/mrc-ide/provisionr",
-	"title": "github/mrc-ide/provisionr",
-	"url": " https://rseng.github.io/software/repository/github/mrc-ide/provisionr",
-	"content": ":package::package::arrow_right::classical_building: Provision a library of R packages"
+	"github/PrincetonUniversity/athena": {
+	"id": "github/PrincetonUniversity/athena",
+	"title": "github/PrincetonUniversity/athena",
+	"url": " https://rseng.github.io/software/repository/github/PrincetonUniversity/athena",
+	"content": "Athena++ GRMHD code and adaptive mesh refinement (AMR) framework"
 	},
-	"github/mrc-ide/dde": {
-	"id": "github/mrc-ide/dde",
-	"title": "github/mrc-ide/dde",
-	"url": " https://rseng.github.io/software/repository/github/mrc-ide/dde",
-	"content": ":clock1130::soon::clock9: Delay differential equation solver"
+	"github/PrincetonUniversity/Athena-Cversion": {
+	"id": "github/PrincetonUniversity/Athena-Cversion",
+	"title": "github/PrincetonUniversity/Athena-Cversion",
+	"url": " https://rseng.github.io/software/repository/github/PrincetonUniversity/Athena-Cversion",
+	"content": "None"
 	},
-	"github/mrc-ide/PlasmoMAPI": {
-	"id": "github/mrc-ide/PlasmoMAPI",
-	"title": "github/mrc-ide/PlasmoMAPI",
-	"url": " https://rseng.github.io/software/repository/github/mrc-ide/PlasmoMAPI",
-	"content": "Mapping Plasmodium Spatial Connectivity from Genetic Data"
+	"github/PrincetonUniversity/FastTemplatePeriodogram": {
+	"id": "github/PrincetonUniversity/FastTemplatePeriodogram",
+	"title": "github/PrincetonUniversity/FastTemplatePeriodogram",
+	"url": " https://rseng.github.io/software/repository/github/PrincetonUniversity/FastTemplatePeriodogram",
+	"content": "NlogN algorithm for least-squares fitting of periodic templates to noisy, non-equispaced time-series data."
 	},
-	"github/mrc-ide/EpiEstim": {
-	"id": "github/mrc-ide/EpiEstim",
-	"title": "github/mrc-ide/EpiEstim",
-	"url": " https://rseng.github.io/software/repository/github/mrc-ide/EpiEstim",
-	"content": "A tool to estimate time varying instantaneous reproduction number during epidemics"
+	"github/pytorch/vision": {
+	"id": "github/pytorch/vision",
+	"title": "github/pytorch/vision",
+	"url": " https://rseng.github.io/software/repository/github/pytorch/vision",
+	"content": "Datasets, Transforms and Models specific to Computer Vision"
 	},
-	"github/mrc-ide/individual": {
-	"id": "github/mrc-ide/individual",
-	"title": "github/mrc-ide/individual",
-	"url": " https://rseng.github.io/software/repository/github/mrc-ide/individual",
-	"content": "R Package for individual based epidemiological models"
+	"github/mjuric/galfast": {
+	"id": "github/mjuric/galfast",
+	"title": "github/mjuric/galfast",
+	"url": " https://rseng.github.io/software/repository/github/mjuric/galfast",
+	"content": "Milky Way Mock Catalog Generator"
 	},
-	"github/mrc-ide/global-lmic-reports-orderly": {
-	"id": "github/mrc-ide/global-lmic-reports-orderly",
-	"title": "github/mrc-ide/global-lmic-reports-orderly",
-	"url": " https://rseng.github.io/software/repository/github/mrc-ide/global-lmic-reports-orderly",
-	"content": "COVID-19 forecast reports for LMICs"
+	"github/RavenGan/GR2D2": {
+	"id": "github/RavenGan/GR2D2",
+	"title": "github/RavenGan/GR2D2",
+	"url": " https://rseng.github.io/software/repository/github/RavenGan/GR2D2",
+	"content": "Take Monte Carlo samples from the posterior distribution based on the graphical R2D2 prior, to estimate the precision matrix for multivariate Gaussian data"
 	},
-	"github/mrc-ide/squire": {
-	"id": "github/mrc-ide/squire",
-	"title": "github/mrc-ide/squire",
-	"url": " https://rseng.github.io/software/repository/github/mrc-ide/squire",
-	"content": "SEIR transmission model of COVID-19. Documentation at:"
+	"github/lgrcia/prose": {
+	"id": "github/lgrcia/prose",
+	"title": "github/lgrcia/prose",
+	"url": " https://rseng.github.io/software/repository/github/lgrcia/prose",
+	"content": "A python framework to process FITS images. Built for Astronomy."
 	},
-	"github/mrc-ide/rrq": {
-	"id": "github/mrc-ide/rrq",
-	"title": "github/mrc-ide/rrq",
-	"url": " https://rseng.github.io/software/repository/github/mrc-ide/rrq",
-	"content": ":runner::runner::runner: Lightweight Redis queues"
+	"github/Punzo/SlicerAstro": {
+	"id": "github/Punzo/SlicerAstro",
+	"title": "github/Punzo/SlicerAstro",
+	"url": " https://rseng.github.io/software/repository/github/Punzo/SlicerAstro",
+	"content": "Astronomy (HI) extension for 3DSlicer (https://www.slicer.org/)"
 	},
-	"github/mrc-ide/drjacoby": {
-	"id": "github/mrc-ide/drjacoby",
-	"title": "github/mrc-ide/drjacoby",
-	"url": " https://rseng.github.io/software/repository/github/mrc-ide/drjacoby",
-	"content": "Flexible Markov chain monte carlo via reparameterization"
+	"github/Biomedical-Imaging-Group/Steer-n-Detect": {
+	"id": "github/Biomedical-Imaging-Group/Steer-n-Detect",
+	"title": "github/Biomedical-Imaging-Group/Steer-n-Detect",
+	"url": " https://rseng.github.io/software/repository/github/Biomedical-Imaging-Group/Steer-n-Detect",
+	"content": "ImageJ plugin - Steerable Template Detector"
 	},
-	"github/mrc-ide/odin": {
-	"id": "github/mrc-ide/odin",
-	"title": "github/mrc-ide/odin",
-	"url": " https://rseng.github.io/software/repository/github/mrc-ide/odin",
-	"content": "ᚩ A DSL for describing and solving differential equations in R"
+	"github/RussellJurek/busy-function-fitting": {
+	"id": "github/RussellJurek/busy-function-fitting",
+	"title": "github/RussellJurek/busy-function-fitting",
+	"url": " https://rseng.github.io/software/repository/github/RussellJurek/busy-function-fitting",
+	"content": "A C/C++ library and Python module that allows users to fit the Busy Function (Westmeier, Jurek, Obreschkow, Koribalski &amp; Staveley-Smith 2013) to data. Previously available at code.google.com/p/busy-function-fitting"
 	},
-	"github/mrc-ide/dust": {
-	"id": "github/mrc-ide/dust",
-	"title": "github/mrc-ide/dust",
-	"url": " https://rseng.github.io/software/repository/github/mrc-ide/dust",
-	"content": ":sparkles::sparkles::sparkles: Iterate multiple realisations of stochastic models"
+	"github/mauropieroni/fastpta": {
+	"id": "github/mauropieroni/fastpta",
+	"title": "github/mauropieroni/fastpta",
+	"url": " https://rseng.github.io/software/repository/github/mauropieroni/fastpta",
+	"content": "A python code to forecast the sensitivity of future Pulsar Timing Array (PTA) configurations and assess the parameter estimation of Stochastic Gravitational Wave Background (SGWB)"
 	},
-	"github/BritishGeologicalSurvey/pyvolcans": {
-	"id": "github/BritishGeologicalSurvey/pyvolcans",
-	"title": "github/BritishGeologicalSurvey/pyvolcans",
-	"url": " https://rseng.github.io/software/repository/github/BritishGeologicalSurvey/pyvolcans",
-	"content": "Python tool to identify analogue volcanoes via VOLCANS (https://doi.org/10.1007/s00445-019-1336-3)"
+	"github/PabloMSanAla/fabada": {
+	"id": "github/PabloMSanAla/fabada",
+	"title": "github/PabloMSanAla/fabada",
+	"url": " https://rseng.github.io/software/repository/github/PabloMSanAla/fabada",
+	"content": "Fully Adaptive Bayesian Algorithm for Data Analysis (FABADA) is a new approach of noise reduction methods. In this repository is shown the package developed for this new method based on \citepaper."
 	},
-	"github/google/caliban": {
-	"id": "github/google/caliban",
-	"title": "github/google/caliban",
-	"url": " https://rseng.github.io/software/repository/github/google/caliban",
-	"content": "Research workflows made easy, locally and in the Cloud."
+	"github/ianfhunter/GNOLL": {
+	"id": "github/ianfhunter/GNOLL",
+	"title": "github/ianfhunter/GNOLL",
+	"url": " https://rseng.github.io/software/repository/github/ianfhunter/GNOLL",
+	"content": "GNOLL is an efficient dice notation parser for multiple programming languages that supports a wide set of dice notation"
 	},
-	"github/google/best": {
-	"id": "github/google/best",
-	"title": "github/google/best",
-	"url": " https://rseng.github.io/software/repository/github/google/best",
-	"content": "Bam Error Stats Tool (best): analysis of error types in aligned reads."
+	"github/adamgayoso/totalVI_reproducibility": {
+	"id": "github/adamgayoso/totalVI_reproducibility",
+	"title": "github/adamgayoso/totalVI_reproducibility",
+	"url": " https://rseng.github.io/software/repository/github/adamgayoso/totalVI_reproducibility",
+	"content": "None"
 	},
-	"github/google/jax": {
-	"id": "github/google/jax",
-	"title": "github/google/jax",
-	"url": " https://rseng.github.io/software/repository/github/google/jax",
-	"content": "Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more"
+	"github/ClaudioZandonella/PRDA": {
+	"id": "github/ClaudioZandonella/PRDA",
+	"title": "github/ClaudioZandonella/PRDA",
+	"url": " https://rseng.github.io/software/repository/github/ClaudioZandonella/PRDA",
+	"content": "Prospective and Retrospective Design Analysis"
 	},
-	"github/INCEPTdk/adaptr": {
-	"id": "github/INCEPTdk/adaptr",
-	"title": "github/INCEPTdk/adaptr",
-	"url": " https://rseng.github.io/software/repository/github/INCEPTdk/adaptr",
-	"content": "Adaptive Trial Simulator"
+	"github/FourierFlows/GeophysicalFlows.jl": {
+	"id": "github/FourierFlows/GeophysicalFlows.jl",
+	"title": "github/FourierFlows/GeophysicalFlows.jl",
+	"url": " https://rseng.github.io/software/repository/github/FourierFlows/GeophysicalFlows.jl",
+	"content": "Geophysical fluid dynamics pseudospectral solvers with Julia and FourierFlows.jl."
 	},
-	"github/MESAHub/mesa": {
-	"id": "github/MESAHub/mesa",
-	"title": "github/MESAHub/mesa",
-	"url": " https://rseng.github.io/software/repository/github/MESAHub/mesa",
-	"content": "Modules for Experiments in Stellar Astrophysics"
+	"github/jamesaird/FAST": {
+	"id": "github/jamesaird/FAST",
+	"title": "github/jamesaird/FAST",
+	"url": " https://rseng.github.io/software/repository/github/jamesaird/FAST",
+	"content": "Fitting and Assessment of Synthetic Templates  - an IDL-based code that fits stellar population synthesis templates to broadband photometry and/or spectra."
 	},
-	"github/cgobat/asymmetric_uncertainty": {
-	"id": "github/cgobat/asymmetric_uncertainty",
-	"title": "github/cgobat/asymmetric_uncertainty",
-	"url": " https://rseng.github.io/software/repository/github/cgobat/asymmetric_uncertainty",
-	"content": "A package that implements a class to represent numeric quantities with asymmetric uncertainties."
+	"github/LabTranslationalArchitectomics/riboWaltz": {
+	"id": "github/LabTranslationalArchitectomics/riboWaltz",
+	"title": "github/LabTranslationalArchitectomics/riboWaltz",
+	"url": " https://rseng.github.io/software/repository/github/LabTranslationalArchitectomics/riboWaltz",
+	"content": "optimization of ribosome P-site positioning in ribosome profiling data"
 	},
-	"github/ITA-Solar/rh": {
-	"id": "github/ITA-Solar/rh",
-	"title": "github/ITA-Solar/rh",
-	"url": " https://rseng.github.io/software/repository/github/ITA-Solar/rh",
-	"content": "RH 1.5D"
+	"github/esa/NIDN": {
+	"id": "github/esa/NIDN",
+	"title": "github/esa/NIDN",
+	"url": " https://rseng.github.io/software/repository/github/esa/NIDN",
+	"content": "Neural Inverse Design of Nanostructures"
 	},
-	"github/FofanovLab/mtsv_tools": {
-	"id": "github/FofanovLab/mtsv_tools",
-	"title": "github/FofanovLab/mtsv_tools",
-	"url": " https://rseng.github.io/software/repository/github/FofanovLab/mtsv_tools",
-	"content": "Core metagenomic binning tools for mtsv"
+	"github/esa/pagmo2-paper": {
+	"id": "github/esa/pagmo2-paper",
+	"title": "github/esa/pagmo2-paper",
+	"url": " https://rseng.github.io/software/repository/github/esa/pagmo2-paper",
+	"content": "paper for JOSS on pagmo and pygmo"
 	},
-	"github/interactivereport/OmicsView0": {
-	"id": "github/interactivereport/OmicsView0",
-	"title": "github/interactivereport/OmicsView0",
-	"url": " https://rseng.github.io/software/repository/github/interactivereport/OmicsView0",
-	"content": "None"
+	"github/esa/polyhedral-gravity-model": {
+	"id": "github/esa/polyhedral-gravity-model",
+	"title": "github/esa/polyhedral-gravity-model",
+	"url": " https://rseng.github.io/software/repository/github/esa/polyhedral-gravity-model",
+	"content": "Implementation of a polyhedral gravity model in C++17 with a Python Binding"
 	},
-	"github/interactivereport/scRNASequest": {
-	"id": "github/interactivereport/scRNASequest",
-	"title": "github/interactivereport/scRNASequest",
-	"url": " https://rseng.github.io/software/repository/github/interactivereport/scRNASequest",
-	"content": "scRNASequest: an ecosystem of scRNA-seq analysis, visualization and publishing"
+	"github/nexml/nexml.java": {
+	"id": "github/nexml/nexml.java",
+	"title": "github/nexml/nexml.java",
+	"url": " https://rseng.github.io/software/repository/github/nexml/nexml.java",
+	"content": "Java API for NeXML."
 	},
-	"github/michaelhb/superplot": {
-	"id": "github/michaelhb/superplot",
-	"title": "github/michaelhb/superplot",
-	"url": " https://rseng.github.io/software/repository/github/michaelhb/superplot",
-	"content": "GUI for making high-quality plots from data from MultiNest or BAYES-X"
+	"github/voutcn/megahit": {
+	"id": "github/voutcn/megahit",
+	"title": "github/voutcn/megahit",
+	"url": " https://rseng.github.io/software/repository/github/voutcn/megahit",
+	"content": "Ultra-fast and memory-efficient (meta-)genome assembler"
 	},
-	"github/drzeeshanahmed/JWES-Visual": {
-	"id": "github/drzeeshanahmed/JWES-Visual",
-	"title": "github/drzeeshanahmed/JWES-Visual",
-	"url": " https://rseng.github.io/software/repository/github/drzeeshanahmed/JWES-Visual",
+	"github/astro-group-bristol/Gradus.jl": {
+	"id": "github/astro-group-bristol/Gradus.jl",
+	"title": "github/astro-group-bristol/Gradus.jl",
+	"url": " https://rseng.github.io/software/repository/github/astro-group-bristol/Gradus.jl",
+	"content": "Extensible spacetime agnostic general relativistic ray-tracing (GRRT)."
+	},
+	"github/kolikem/loma": {
+	"id": "github/kolikem/loma",
+	"title": "github/kolikem/loma",
+	"url": " https://rseng.github.io/software/repository/github/kolikem/loma",
 	"content": "None"
 	},
-	"github/bmvdgeijn/WASP": {
-	"id": "github/bmvdgeijn/WASP",
-	"title": "github/bmvdgeijn/WASP",
-	"url": " https://rseng.github.io/software/repository/github/bmvdgeijn/WASP",
-	"content": "WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery"
+	"github/Hegghammer/daiR": {
+	"id": "github/Hegghammer/daiR",
+	"title": "github/Hegghammer/daiR",
+	"url": " https://rseng.github.io/software/repository/github/Hegghammer/daiR",
+	"content": "R package for Google Document AI "
 	},
-	"github/sahasuparna/DeMoS": {
-	"id": "github/sahasuparna/DeMoS",
-	"title": "github/sahasuparna/DeMoS",
-	"url": " https://rseng.github.io/software/repository/github/sahasuparna/DeMoS",
-	"content": "None"
+	"github/open2c/pairtools": {
+	"id": "github/open2c/pairtools",
+	"title": "github/open2c/pairtools",
+	"url": " https://rseng.github.io/software/repository/github/open2c/pairtools",
+	"content": "CLI tools to process mapped Hi-C data"
 	},
-	"github/brinckmann/montepython_public": {
-	"id": "github/brinckmann/montepython_public",
-	"title": "github/brinckmann/montepython_public",
-	"url": " https://rseng.github.io/software/repository/github/brinckmann/montepython_public",
-	"content": "Public repository for the Monte Python Code"
+	"github/Exo-TiC/ExoTiC-LD": {
+	"id": "github/Exo-TiC/ExoTiC-LD",
+	"title": "github/Exo-TiC/ExoTiC-LD",
+	"url": " https://rseng.github.io/software/repository/github/Exo-TiC/ExoTiC-LD",
+	"content": "Limb-darkening package to calculate the coefficients for specific instruments, stars, and wavelength ranges"
 	},
-	"github/MultiQC/MultiQC": {
-	"id": "github/MultiQC/MultiQC",
-	"title": "github/MultiQC/MultiQC",
-	"url": " https://rseng.github.io/software/repository/github/MultiQC/MultiQC",
-	"content": "Aggregate results from bioinformatics analyses across many samples into a single report."
+	"github/METHODS-Group/DRDMannTurb": {
+	"id": "github/METHODS-Group/DRDMannTurb",
+	"title": "github/METHODS-Group/DRDMannTurb",
+	"url": " https://rseng.github.io/software/repository/github/METHODS-Group/DRDMannTurb",
+	"content": "None"
 	},
-	"github/GreycLab/gmic": {
-	"id": "github/GreycLab/gmic",
-	"title": "github/GreycLab/gmic",
-	"url": " https://rseng.github.io/software/repository/github/GreycLab/gmic",
-	"content": "GREYC&#39;s Magic for Image Computing: A Full-Featured Open-Source Framework for Image Processing"
+	"github/benlansdell/ethome": {
+	"id": "github/benlansdell/ethome",
+	"title": "github/benlansdell/ethome",
+	"url": " https://rseng.github.io/software/repository/github/benlansdell/ethome",
+	"content": "Tools for machine learning of animal behavior"
 	},
-	"github/pjedge/longshot": {
-	"id": "github/pjedge/longshot",
-	"title": "github/pjedge/longshot",
-	"url": " https://rseng.github.io/software/repository/github/pjedge/longshot",
-	"content": "diploid SNV caller for error-prone reads"
+	"github/JKoblitz/DSMZCellDive": {
+	"id": "github/JKoblitz/DSMZCellDive",
+	"title": "github/JKoblitz/DSMZCellDive",
+	"url": " https://rseng.github.io/software/repository/github/JKoblitz/DSMZCellDive",
+	"content": "None"
 	},
-	"github/kowallus/mbgc": {
-	"id": "github/kowallus/mbgc",
-	"title": "github/kowallus/mbgc",
-	"url": " https://rseng.github.io/software/repository/github/kowallus/mbgc",
-	"content": "Multiple Bacteria Genome Compressor (MBGC)"
+	"github/santeripuranen/SpydrPick": {
+	"id": "github/santeripuranen/SpydrPick",
+	"title": "github/santeripuranen/SpydrPick",
+	"url": " https://rseng.github.io/software/repository/github/santeripuranen/SpydrPick",
+	"content": "SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure."
 	},
-	"github/bow/fsnviz": {
-	"id": "github/bow/fsnviz",
-	"title": "github/bow/fsnviz",
-	"url": " https://rseng.github.io/software/repository/github/bow/fsnviz",
-	"content": "Tool for plotting gene fusion events using Circos."
+	"github/mzy2240/ESA": {
+	"id": "github/mzy2240/ESA",
+	"title": "github/mzy2240/ESA",
+	"url": " https://rseng.github.io/software/repository/github/mzy2240/ESA",
+	"content": "Easy SimAuto (ESA): An easy-to-use Python connector to PowerWorld Simulator Automation Server (SimAuto)"
 	},
-	"github/bow/crimson": {
-	"id": "github/bow/crimson",
-	"title": "github/bow/crimson",
-	"url": " https://rseng.github.io/software/repository/github/bow/crimson",
-	"content": "Bioinformatics tool outputs converter to JSON or YAML"
+	"github/johentsch/ms3": {
+	"id": "github/johentsch/ms3",
+	"title": "github/johentsch/ms3",
+	"url": " https://rseng.github.io/software/repository/github/johentsch/ms3",
+	"content": "A parser for annotated MuseScore 3 files."
 	},
-	"github/CyclotronResearchCentre/bidsme": {
-	"id": "github/CyclotronResearchCentre/bidsme",
-	"title": "github/CyclotronResearchCentre/bidsme",
-	"url": " https://rseng.github.io/software/repository/github/CyclotronResearchCentre/bidsme",
-	"content": "Flexible bidsificator for multimodal datasets"
+	"github/gijut/gnucash": {
+	"id": "github/gijut/gnucash",
+	"title": "github/gijut/gnucash",
+	"url": " https://rseng.github.io/software/repository/github/gijut/gnucash",
+	"content": "Public Mirror of code.gnucash.org/gnucash"
 	},
-	"github/alekseyzimin/ufasta": {
-	"id": "github/alekseyzimin/ufasta",
-	"title": "github/alekseyzimin/ufasta",
-	"url": " https://rseng.github.io/software/repository/github/alekseyzimin/ufasta",
-	"content": "Utility to manipulate fasta files"
+	"github/elwinter/nnde": {
+	"id": "github/elwinter/nnde",
+	"title": "github/elwinter/nnde",
+	"url": " https://rseng.github.io/software/repository/github/elwinter/nnde",
+	"content": "nnde is a package of Python modules which implement a set of neural networks which solve ordinary and partial differential equations. This code is based on the previous package, nnode."
 	},
-	"github/isoverse/isoreader": {
-	"id": "github/isoverse/isoreader",
-	"title": "github/isoverse/isoreader",
-	"url": " https://rseng.github.io/software/repository/github/isoverse/isoreader",
-	"content": "Read IRMS (Isotope Ratio Mass Spectrometry) data files into R"
+	"github/johncwok/CategoricalTimeSeries.jl": {
+	"id": "github/johncwok/CategoricalTimeSeries.jl",
+	"title": "github/johncwok/CategoricalTimeSeries.jl",
+	"url": " https://rseng.github.io/software/repository/github/johncwok/CategoricalTimeSeries.jl",
+	"content": "Toolbox for categorical time-series analysis."
 	},
-	"github/CFSAN-Biostatistics/SeroTools": {
-	"id": "github/CFSAN-Biostatistics/SeroTools",
-	"title": "github/CFSAN-Biostatistics/SeroTools",
-	"url": " https://rseng.github.io/software/repository/github/CFSAN-Biostatistics/SeroTools",
-	"content": "A toolkit and repository for the White-Kauffmann-Le Minor scheme for Salmonella serotyping."
+	"github/aconley/simple_cosfitter": {
+	"id": "github/aconley/simple_cosfitter",
+	"title": "github/aconley/simple_cosfitter",
+	"url": " https://rseng.github.io/software/repository/github/aconley/simple_cosfitter",
+	"content": "Grid based SN cosmology fitting code"
 	},
-	"github/homerjed/sbiax": {
-	"id": "github/homerjed/sbiax",
-	"title": "github/homerjed/sbiax",
-	"url": " https://rseng.github.io/software/repository/github/homerjed/sbiax",
-	"content": "Fast, lightweight and parallelised simulation-based inference in JAX."
+	"github/aconley/mbb_emcee": {
+	"id": "github/aconley/mbb_emcee",
+	"title": "github/aconley/mbb_emcee",
+	"url": " https://rseng.github.io/software/repository/github/aconley/mbb_emcee",
+	"content": "Modified blackbody MCMC code"
 	},
-	"github/carlodev/SyntheticEddyMethod.jl": {
-	"id": "github/carlodev/SyntheticEddyMethod.jl",
-	"title": "github/carlodev/SyntheticEddyMethod.jl",
-	"url": " https://rseng.github.io/software/repository/github/carlodev/SyntheticEddyMethod.jl",
+	"github/lu-yizhou/ClusterSeg": {
+	"id": "github/lu-yizhou/ClusterSeg",
+	"title": "github/lu-yizhou/ClusterSeg",
+	"url": " https://rseng.github.io/software/repository/github/lu-yizhou/ClusterSeg",
 	"content": "None"
 	},
-	"github/xenon-middleware/pyxenon": {
-	"id": "github/xenon-middleware/pyxenon",
-	"title": "github/xenon-middleware/pyxenon",
-	"url": " https://rseng.github.io/software/repository/github/xenon-middleware/pyxenon",
-	"content": "Python bindings for the Xenon API"
+	"github/sib-swiss/glittr": {
+	"id": "github/sib-swiss/glittr",
+	"title": "github/sib-swiss/glittr",
+	"url": " https://rseng.github.io/software/repository/github/sib-swiss/glittr",
+	"content": "A web application for finding and comparing bioinformatics training materials on GitHub and GitLab"
 	},
-	"github/xenon-middleware/xenon": {
-	"id": "github/xenon-middleware/xenon",
-	"title": "github/xenon-middleware/xenon",
-	"url": " https://rseng.github.io/software/repository/github/xenon-middleware/xenon",
-	"content": "A middleware abstraction library that provides a simple programming interface to various compute and storage resources."
+	"github/sib-swiss/pftools3": {
+	"id": "github/sib-swiss/pftools3",
+	"title": "github/sib-swiss/pftools3",
+	"url": " https://rseng.github.io/software/repository/github/sib-swiss/pftools3",
+	"content": "A  suite of tools to build and search generalized profiles"
 	},
-	"github/wtraylor/modular_megafauna_model": {
-	"id": "github/wtraylor/modular_megafauna_model",
-	"title": "github/wtraylor/modular_megafauna_model",
-	"url": " https://rseng.github.io/software/repository/github/wtraylor/modular_megafauna_model",
-	"content": "Extendable, dynamic, process-based herbivore simulator that can be integrated into a dynamic vegetation model. Written as a C++ library."
+	"github/hall-lab/speedseq": {
+	"id": "github/hall-lab/speedseq",
+	"title": "github/hall-lab/speedseq",
+	"url": " https://rseng.github.io/software/repository/github/hall-lab/speedseq",
+	"content": "A flexible framework for rapid genome analysis and interpretation"
 	},
-	"github/thachnguyen/CRISPRnano": {
-	"id": "github/thachnguyen/CRISPRnano",
-	"title": "github/thachnguyen/CRISPRnano",
-	"url": " https://rseng.github.io/software/repository/github/thachnguyen/CRISPRnano",
-	"content": "A simple website analyzes CRISPR experiment for Oxford Nanopore Sequencing data."
+	"github/hall-lab/bamkit": {
+	"id": "github/hall-lab/bamkit",
+	"title": "github/hall-lab/bamkit",
+	"url": " https://rseng.github.io/software/repository/github/hall-lab/bamkit",
+	"content": "Tools for common BAM file manipulations"
 	},
-	"github/ot483/NetCom": {
-	"id": "github/ot483/NetCom",
-	"title": "github/ot483/NetCom",
-	"url": " https://rseng.github.io/software/repository/github/ot483/NetCom",
-	"content": "None"
+	"github/oleksulkowski/Syn-CpG-Spacer": {
+	"id": "github/oleksulkowski/Syn-CpG-Spacer",
+	"title": "github/oleksulkowski/Syn-CpG-Spacer",
+	"url": " https://rseng.github.io/software/repository/github/oleksulkowski/Syn-CpG-Spacer",
+	"content": "A Panel progressive web app for synonymous recoding of viral genomes with CpG dinucleotides"
 	},
-	"github/ants-project/ANTs": {
-	"id": "github/ants-project/ANTs",
-	"title": "github/ants-project/ANTs",
-	"url": " https://rseng.github.io/software/repository/github/ants-project/ANTs",
-	"content": "None"
+	"github/zclaytor/kiauhoku": {
+	"id": "github/zclaytor/kiauhoku",
+	"title": "github/zclaytor/kiauhoku",
+	"url": " https://rseng.github.io/software/repository/github/zclaytor/kiauhoku",
+	"content": "Python utilities for stellar model grid interpolation"
 	},
-	"github/ratt-ru/breizorro": {
-	"id": "github/ratt-ru/breizorro",
-	"title": "github/ratt-ru/breizorro",
-	"url": " https://rseng.github.io/software/repository/github/ratt-ru/breizorro",
-	"content": "Image masking tool(s) possibly of Breton spiritual origin"
+	"github/zclaytor/butterpy": {
+	"id": "github/zclaytor/butterpy",
+	"title": "github/zclaytor/butterpy",
+	"url": " https://rseng.github.io/software/repository/github/zclaytor/butterpy",
+	"content": "Python simulations of stellar butterfly diagrams and rotational light curves"
 	},
-	"github/ratt-ru/codex-africanus": {
-	"id": "github/ratt-ru/codex-africanus",
-	"title": "github/ratt-ru/codex-africanus",
-	"url": " https://rseng.github.io/software/repository/github/ratt-ru/codex-africanus",
-	"content": "Radio Astronomy Algorithms Library"
+	"github/dcjones/quip": {
+	"id": "github/dcjones/quip",
+	"title": "github/dcjones/quip",
+	"url": " https://rseng.github.io/software/repository/github/dcjones/quip",
+	"content": "Compressing next-generation sequencing data with extreme prejudice."
 	},
-	"github/ratt-ru/dask-ms": {
-	"id": "github/ratt-ru/dask-ms",
-	"title": "github/ratt-ru/dask-ms",
-	"url": " https://rseng.github.io/software/repository/github/ratt-ru/dask-ms",
-	"content": "Implementation of a dask/xarray dataset backed by a CASA MS"
+	"github/naonori/hitomi": {
+	"id": "github/naonori/hitomi",
+	"title": "github/naonori/hitomi",
+	"url": " https://rseng.github.io/software/repository/github/naonori/hitomi",
+	"content": "Public repository for the Hitomi Code"
 	},
-	"github/ratt-ru/QuartiCal": {
-	"id": "github/ratt-ru/QuartiCal",
-	"title": "github/ratt-ru/QuartiCal",
-	"url": " https://rseng.github.io/software/repository/github/ratt-ru/QuartiCal",
-	"content": "CubiCal, but with greater power."
+	"github/RECeSS-EU-Project/stanscofi": {
+	"id": "github/RECeSS-EU-Project/stanscofi",
+	"title": "github/RECeSS-EU-Project/stanscofi",
+	"url": " https://rseng.github.io/software/repository/github/RECeSS-EU-Project/stanscofi",
+	"content": "Package for STANdard drug Screening by COllaborative FIltering. Performs benchmarks against datasets and SotA algorithms, and implements training, validation and testing procedures."
 	},
-	"github/ratt-ru/PyMORESANE": {
-	"id": "github/ratt-ru/PyMORESANE",
-	"title": "github/ratt-ru/PyMORESANE",
-	"url": " https://rseng.github.io/software/repository/github/ratt-ru/PyMORESANE",
-	"content": "Repository for the Python version of the MORESANE deconvolution algorithm"
+	"github/ska-sa/hibayes": {
+	"id": "github/ska-sa/hibayes",
+	"title": "github/ska-sa/hibayes",
+	"url": " https://rseng.github.io/software/repository/github/ska-sa/hibayes",
+	"content": "Reverend 21 work"
 	},
-	"github/ratt-ru/rodrigues": {
-	"id": "github/ratt-ru/rodrigues",
-	"title": "github/ratt-ru/rodrigues",
-	"url": " https://rseng.github.io/software/repository/github/ratt-ru/rodrigues",
-	"content": "web based radio telescope calibration simulation"
+	"github/ska-sa/katdal": {
+	"id": "github/ska-sa/katdal",
+	"title": "github/ska-sa/katdal",
+	"url": " https://rseng.github.io/software/repository/github/ska-sa/katdal",
+	"content": "Data access library for the MeerKAT radio telescope"
 	},
-	"github/ratt-ru/eidos": {
-	"id": "github/ratt-ru/eidos",
-	"title": "github/ratt-ru/eidos",
-	"url": " https://rseng.github.io/software/repository/github/ratt-ru/eidos",
-	"content": "Modelling primary beams of radio astronomy antennas"
+	"github/SNEWS2/snewpy": {
+	"id": "github/SNEWS2/snewpy",
+	"title": "github/SNEWS2/snewpy",
+	"url": " https://rseng.github.io/software/repository/github/SNEWS2/snewpy",
+	"content": "collection of models from the community in common format for use by the SNEWS teams"
 	},
-	"github/ratt-ru/CubiCal": {
-	"id": "github/ratt-ru/CubiCal",
-	"title": "github/ratt-ru/CubiCal",
-	"url": " https://rseng.github.io/software/repository/github/ratt-ru/CubiCal",
-	"content": "A fast radio interferometric calibration suite."
+	"github/rbrthogan/GAz": {
+	"id": "github/rbrthogan/GAz",
+	"title": "github/rbrthogan/GAz",
+	"url": " https://rseng.github.io/software/repository/github/rbrthogan/GAz",
+	"content": "A genetic algorithm that finds optimal polynomial form to fit to data. "
 	},
-	"github/ratt-ru/Stimela-classic": {
-	"id": "github/ratt-ru/Stimela-classic",
-	"title": "github/ratt-ru/Stimela-classic",
-	"url": " https://rseng.github.io/software/repository/github/ratt-ru/Stimela-classic",
-	"content": "Containerized radio interferometry scripting framework -- NB: Classic version is no longer in active development, use stimela 2! See README for details."
+	"github/PRIS-CV/DS-UI": {
+	"id": "github/PRIS-CV/DS-UI",
+	"title": "github/PRIS-CV/DS-UI",
+	"url": " https://rseng.github.io/software/repository/github/PRIS-CV/DS-UI",
+	"content": "DS-UI: Dual-Supervised Mixture of Gaussian Mixture Models for Uncertainty Inference in Image Recognition (IEEE TIP 2021)"
+	},
+	"github/koszullab/pareidolia": {
+	"id": "github/koszullab/pareidolia",
+	"title": "github/koszullab/pareidolia",
+	"url": " https://rseng.github.io/software/repository/github/koszullab/pareidolia",
+	"content": "Multi-sample change detection in Hi-C patterns"
 	},
-	"github/ratt-ru/Stimela": {
-	"id": "github/ratt-ru/Stimela",
-	"title": "github/ratt-ru/Stimela",
-	"url": " https://rseng.github.io/software/repository/github/ratt-ru/Stimela",
-	"content": "A containerized radio interferometry scripting framework"
+	"github/caimeng2/seesus": {
+	"id": "github/caimeng2/seesus",
+	"title": "github/caimeng2/seesus",
+	"url": " https://rseng.github.io/software/repository/github/caimeng2/seesus",
+	"content": "A Python package that identifies 17 Sustainable Development Goals and their 169 Targets in text, and classifies into social, environmental, and economic sustainability."
 	},
-	"github/ratt-ru/solarkat": {
-	"id": "github/ratt-ru/solarkat",
-	"title": "github/ratt-ru/solarkat",
-	"url": " https://rseng.github.io/software/repository/github/ratt-ru/solarkat",
-	"content": "MeerKAT as a solar telescope"
+	"github/iontorrent/TS": {
+	"id": "github/iontorrent/TS",
+	"title": "github/iontorrent/TS",
+	"url": " https://rseng.github.io/software/repository/github/iontorrent/TS",
+	"content": "Torrent Suite"
 	},
-	"github/ratt-ru/montblanc": {
-	"id": "github/ratt-ru/montblanc",
-	"title": "github/ratt-ru/montblanc",
-	"url": " https://rseng.github.io/software/repository/github/ratt-ru/montblanc",
-	"content": "GPU-accelerated RIME implementations. An offshoot of the BIRO projects, and one of the foothills of Mt Exaflop."
+	"github/rajewsky-lab/novosparc": {
+	"id": "github/rajewsky-lab/novosparc",
+	"title": "github/rajewsky-lab/novosparc",
+	"url": " https://rseng.github.io/software/repository/github/rajewsky-lab/novosparc",
+	"content": "None"
 	},
-	"github/ratt-ru/smops": {
-	"id": "github/ratt-ru/smops",
-	"title": "github/ratt-ru/smops",
-	"url": " https://rseng.github.io/software/repository/github/ratt-ru/smops",
-	"content": "Interpolate FITS model images over higher frequency intervals"
+	"github/rajewsky-lab/dropbead": {
+	"id": "github/rajewsky-lab/dropbead",
+	"title": "github/rajewsky-lab/dropbead",
+	"url": " https://rseng.github.io/software/repository/github/rajewsky-lab/dropbead",
+	"content": "Basic Exploration and Analysis of Drop-seq Data"
 	},
-	"github/jw-lin/cbeam": {
-	"id": "github/jw-lin/cbeam",
-	"title": "github/jw-lin/cbeam",
-	"url": " https://rseng.github.io/software/repository/github/jw-lin/cbeam",
+	"github/rajewsky-lab/spacemake": {
+	"id": "github/rajewsky-lab/spacemake",
+	"title": "github/rajewsky-lab/spacemake",
+	"url": " https://rseng.github.io/software/repository/github/rajewsky-lab/spacemake",
 	"content": "None"
 	},
-	"github/jw-lin/lightbeam": {
-	"id": "github/jw-lin/lightbeam",
-	"title": "github/jw-lin/lightbeam",
-	"url": " https://rseng.github.io/software/repository/github/jw-lin/lightbeam",
-	"content": "simulate light through weakly-guiding waveguides using the finite-differences beam propagation method on an adaptive mesh"
+	"github/Rocsg/FijiRelax": {
+	"id": "github/Rocsg/FijiRelax",
+	"title": "github/Rocsg/FijiRelax",
+	"url": " https://rseng.github.io/software/repository/github/Rocsg/FijiRelax",
+	"content": "FijiRelax: 3D+t multi-echo spin-echo sequences MRI analysis"
 	},
-	"github/agsreejith/CONTROL": {
-	"id": "github/agsreejith/CONTROL",
-	"title": "github/agsreejith/CONTROL",
-	"url": " https://rseng.github.io/software/repository/github/agsreejith/CONTROL",
-	"content": "V1.0 of CUTE data reduction pipeline"
+	"github/WSWUP/gridwxcomp": {
+	"id": "github/WSWUP/gridwxcomp",
+	"title": "github/WSWUP/gridwxcomp",
+	"url": " https://rseng.github.io/software/repository/github/WSWUP/gridwxcomp",
+	"content": "Comparison of weather station and gridded climate datasets"
 	},
-	"github/trinotate/trinotatehub.io": {
-	"id": "github/trinotate/trinotatehub.io",
-	"title": "github/trinotate/trinotatehub.io",
-	"url": " https://rseng.github.io/software/repository/github/trinotate/trinotatehub.io",
-	"content": "a comprehensive annotation suite designed for automatic functional annotation of transcriptomes, particularly de novo assembled transcriptomes, from model or non-model organisms."
+	"github/WSWUP/agweather-qaqc": {
+	"id": "github/WSWUP/agweather-qaqc",
+	"title": "github/WSWUP/agweather-qaqc",
+	"url": " https://rseng.github.io/software/repository/github/WSWUP/agweather-qaqc",
+	"content": "Visualized QA/QC of weather station data"
 	},
-	"github/fitbenchmarking/fitbenchmarking": {
-	"id": "github/fitbenchmarking/fitbenchmarking",
-	"title": "github/fitbenchmarking/fitbenchmarking",
-	"url": " https://rseng.github.io/software/repository/github/fitbenchmarking/fitbenchmarking",
-	"content": "Tool for comparing the run time and accuracy of minimizers on fit benchmarking problems"
+	"github/axgoujon/convex_ridge_regularizers": {
+	"id": "github/axgoujon/convex_ridge_regularizers",
+	"title": "github/axgoujon/convex_ridge_regularizers",
+	"url": " https://rseng.github.io/software/repository/github/axgoujon/convex_ridge_regularizers",
+	"content": "None"
 	},
-	"github/SevgiAkten/pycellga": {
-	"id": "github/SevgiAkten/pycellga",
-	"title": "github/SevgiAkten/pycellga",
-	"url": " https://rseng.github.io/software/repository/github/SevgiAkten/pycellga",
-	"content": "Cellular Genetic Algorithms in Python."
+	"github/aikubo/LinkingLines": {
+	"id": "github/aikubo/LinkingLines",
+	"title": "github/aikubo/LinkingLines",
+	"url": " https://rseng.github.io/software/repository/github/aikubo/LinkingLines",
+	"content": "Link and Cluster Cartesian Line Segments"
 	},
-	"github/pandas-dev/pandas": {
-	"id": "github/pandas-dev/pandas",
-	"title": "github/pandas-dev/pandas",
-	"url": " https://rseng.github.io/software/repository/github/pandas-dev/pandas",
-	"content": "Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more"
+	"github/cbalbin-FIU/Epitopedia": {
+	"id": "github/cbalbin-FIU/Epitopedia",
+	"title": "github/cbalbin-FIU/Epitopedia",
+	"url": " https://rseng.github.io/software/repository/github/cbalbin-FIU/Epitopedia",
+	"content": "Epitopedia: identifying molecular mimicry of known immune epitopes"
 	},
-	"github/vmalnathnambiar/exfilms": {
-	"id": "github/vmalnathnambiar/exfilms",
-	"title": "github/vmalnathnambiar/exfilms",
-	"url": " https://rseng.github.io/software/repository/github/vmalnathnambiar/exfilms",
-	"content": "A cross-platform, command line interface tool to extract mass spectrometry data from mzML formatted files, with filtering capabilities."
+	"github/csj607/STaRS": {
+	"id": "github/csj607/STaRS",
+	"title": "github/csj607/STaRS",
+	"url": " https://rseng.github.io/software/repository/github/csj607/STaRS",
+	"content": "Sejong Radiative Transfer through Raman and Rayleigh Scattering with atomic hydrogen"
 	},
-	"github/CornellLabofOrnithology/auk": {
-	"id": "github/CornellLabofOrnithology/auk",
-	"title": "github/CornellLabofOrnithology/auk",
-	"url": " https://rseng.github.io/software/repository/github/CornellLabofOrnithology/auk",
-	"content": "Working with eBird data in R"
+	"github/ysekig/GPMsDB-dbtk": {
+	"id": "github/ysekig/GPMsDB-dbtk",
+	"title": "github/ysekig/GPMsDB-dbtk",
+	"url": " https://rseng.github.io/software/repository/github/ysekig/GPMsDB-dbtk",
+	"content": "toolkits for GPMsDB-tk to modify its database with user-provided bacterial and archaeal genome/metagenome-assembled genome (MAG) sequences"
 	},
-	"github/GabrieleParimbelli/COLIBRI": {
-	"id": "github/GabrieleParimbelli/COLIBRI",
-	"title": "github/GabrieleParimbelli/COLIBRI",
-	"url": " https://rseng.github.io/software/repository/github/GabrieleParimbelli/COLIBRI",
-	"content": "Cosmology libraries in Python"
+	"github/ysekig/GPMsDB-tk": {
+	"id": "github/ysekig/GPMsDB-tk",
+	"title": "github/ysekig/GPMsDB-tk",
+	"url": " https://rseng.github.io/software/repository/github/ysekig/GPMsDB-tk",
+	"content": "Genomically predicted protein mass database (GPMsDB) toolkits for assigning taxonomic identification of bacterial and archaeal cells with user-provided MALDI-TOF mass spectrometry profiles"
 	},
-	"github/mmollina/viewpoly": {
-	"id": "github/mmollina/viewpoly",
-	"title": "github/mmollina/viewpoly",
-	"url": " https://rseng.github.io/software/repository/github/mmollina/viewpoly",
-	"content": "R package to visualize genetic maps and QTL analysis."
+	"github/jendelel/PrankWebApp": {
+	"id": "github/jendelel/PrankWebApp",
+	"title": "github/jendelel/PrankWebApp",
+	"url": " https://rseng.github.io/software/repository/github/jendelel/PrankWebApp",
+	"content": "Web application for protein-ligand binding sites analysis and visualization"
 	},
-	"github/mpi4jax/mpi4jax": {
-	"id": "github/mpi4jax/mpi4jax",
-	"title": "github/mpi4jax/mpi4jax",
-	"url": " https://rseng.github.io/software/repository/github/mpi4jax/mpi4jax",
-	"content": "Zero-copy MPI communication of JAX arrays, for turbo-charged HPC applications in Python :zap:"
+	"github/pierfied/karmma": {
+	"id": "github/pierfied/karmma",
+	"title": "github/pierfied/karmma",
+	"url": " https://rseng.github.io/software/repository/github/pierfied/karmma",
+	"content": "KaRMMa - Kappa Reconstruction for Mass Mapping"
 	},
-	"github/pjcigan/obsplanning": {
-	"id": "github/pjcigan/obsplanning",
-	"title": "github/pjcigan/obsplanning",
-	"url": " https://rseng.github.io/software/repository/github/pjcigan/obsplanning",
-	"content": "Python tools for planning astronomical observations"
+	"github/franpoz/SHERLOCK": {
+	"id": "github/franpoz/SHERLOCK",
+	"title": "github/franpoz/SHERLOCK",
+	"url": " https://rseng.github.io/software/repository/github/franpoz/SHERLOCK",
+	"content": "Easy and versatile open-source  code to explore Kepler, K2 and TESS data in the search for exoplanets"
 	},
-	"github/pjcigan/multicolorfits": {
-	"id": "github/pjcigan/multicolorfits",
-	"title": "github/pjcigan/multicolorfits",
-	"url": " https://rseng.github.io/software/repository/github/pjcigan/multicolorfits",
-	"content": "Python tool for colorizing and combining fits images."
+	"github/VChristiaens/special": {
+	"id": "github/VChristiaens/special",
+	"title": "github/VChristiaens/special",
+	"url": " https://rseng.github.io/software/repository/github/VChristiaens/special",
+	"content": "Package for spectral characterization of (sub-)stellar objects"
 	},
-	"github/pjcigan/pysymlog": {
-	"id": "github/pjcigan/pysymlog",
-	"title": "github/pjcigan/pysymlog",
-	"url": " https://rseng.github.io/software/repository/github/pjcigan/pysymlog",
-	"content": "Utilities for plotting in matplotlib, plotly, etc. using a symmetric or signed log transform. This allows the plotting of positive and negative data with a pseudo-log axis scale or stretch. "
+	"github/VChristiaens/vcal_sphere": {
+	"id": "github/VChristiaens/vcal_sphere",
+	"title": "github/VChristiaens/vcal_sphere",
+	"url": " https://rseng.github.io/software/repository/github/VChristiaens/vcal_sphere",
+	"content": "Pipeline for calibration, pre-processing and post-processing of SPHERE IRDIS and IFS data, based on VIP routines.."
 	},
-	"github/medema-group/bigslice": {
-	"id": "github/medema-group/bigslice",
-	"title": "github/medema-group/bigslice",
-	"url": " https://rseng.github.io/software/repository/github/medema-group/bigslice",
-	"content": "A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data"
+	"github/VChristiaens/MINDS": {
+	"id": "github/VChristiaens/MINDS",
+	"title": "github/VChristiaens/MINDS",
+	"url": " https://rseng.github.io/software/repository/github/VChristiaens/MINDS",
+	"content": "MINDS pipeline for the reduction of MIRI-MRS data"
 	},
-	"github/younglab/origami": {
-	"id": "github/younglab/origami",
-	"title": "github/younglab/origami",
-	"url": " https://rseng.github.io/software/repository/github/younglab/origami",
-	"content": "Statistical Modeling of ChIA-PET interactions"
+	"github/radiocosmology/draco": {
+	"id": "github/radiocosmology/draco",
+	"title": "github/radiocosmology/draco",
+	"url": " https://rseng.github.io/software/repository/github/radiocosmology/draco",
+	"content": "A pipeline for the analysis and simulation of drift scan radio data"
 	},
-	"github/hablabx/rfast": {
-	"id": "github/hablabx/rfast",
-	"title": "github/hablabx/rfast",
-	"url": " https://rseng.github.io/software/repository/github/hablabx/rfast",
-	"content": "A fast tool for planetary spectral forward and inverse modeling."
+	"github/radiocosmology/driftscan": {
+	"id": "github/radiocosmology/driftscan",
+	"title": "github/radiocosmology/driftscan",
+	"url": " https://rseng.github.io/software/repository/github/radiocosmology/driftscan",
+	"content": "Data analysis of transit radio interferometers, particularly for 21cm cosmology."
 	},
-	"github/chocoteam/choco-solver": {
-	"id": "github/chocoteam/choco-solver",
-	"title": "github/chocoteam/choco-solver",
-	"url": " https://rseng.github.io/software/repository/github/chocoteam/choco-solver",
-	"content": "An open-source Java library for Constraint Programming"
+	"github/radiocosmology/caput": {
+	"id": "github/radiocosmology/caput",
+	"title": "github/radiocosmology/caput",
+	"url": " https://rseng.github.io/software/repository/github/radiocosmology/caput",
+	"content": "Cluster Astronomical Python Utilities"
 	},
-	"github/sonwell/biotools": {
-	"id": "github/sonwell/biotools",
-	"title": "github/sonwell/biotools",
-	"url": " https://rseng.github.io/software/repository/github/sonwell/biotools",
-	"content": "A bunch of bioinformatics tools."
+	"github/artefactory/choice-learn": {
+	"id": "github/artefactory/choice-learn",
+	"title": "github/artefactory/choice-learn",
+	"url": " https://rseng.github.io/software/repository/github/artefactory/choice-learn",
+	"content": "Discrete choice modeling in Python with large datasets &amp; models - Assortment &amp; Pricing Optimization ."
 	},
-	"github/epic-astronomy/EPIC": {
-	"id": "github/epic-astronomy/EPIC",
-	"title": "github/epic-astronomy/EPIC",
-	"url": " https://rseng.github.io/software/repository/github/epic-astronomy/EPIC",
-	"content": "None"
+	"github/IAMconsortium/pyam": {
+	"id": "github/IAMconsortium/pyam",
+	"title": "github/IAMconsortium/pyam",
+	"url": " https://rseng.github.io/software/repository/github/IAMconsortium/pyam",
+	"content": "Analysis &amp; visualization of energy &amp; climate scenarios"
 	},
-	"github/BasilioRuiz/SIR-code": {
-	"id": "github/BasilioRuiz/SIR-code",
-	"title": "github/BasilioRuiz/SIR-code",
-	"url": " https://rseng.github.io/software/repository/github/BasilioRuiz/SIR-code",
-	"content": "None"
+	"github/AWehrhahn/SME": {
+	"id": "github/AWehrhahn/SME",
+	"title": "github/AWehrhahn/SME",
+	"url": " https://rseng.github.io/software/repository/github/AWehrhahn/SME",
+	"content": "Spectroscopy Made Easy"
 	},
-	"github/tpapp/MCMCDiagnostics.jl": {
-	"id": "github/tpapp/MCMCDiagnostics.jl",
-	"title": "github/tpapp/MCMCDiagnostics.jl",
-	"url": " https://rseng.github.io/software/repository/github/tpapp/MCMCDiagnostics.jl",
-	"content": "Markov Chain Monte Carlo convergence diagnostics in Julia"
+	"github/pymatting/pymatting": {
+	"id": "github/pymatting/pymatting",
+	"title": "github/pymatting/pymatting",
+	"url": " https://rseng.github.io/software/repository/github/pymatting/pymatting",
+	"content": "A Python library for alpha matting"
 	},
-	"github/sap218/jabberwocky": {
-	"id": "github/sap218/jabberwocky",
-	"title": "github/sap218/jabberwocky",
-	"url": " https://rseng.github.io/software/repository/github/sap218/jabberwocky",
-	"content": "toolkit for those nonsensical ontologies"
+	"github/ginolhac/mapDamage": {
+	"id": "github/ginolhac/mapDamage",
+	"title": "github/ginolhac/mapDamage",
+	"url": " https://rseng.github.io/software/repository/github/ginolhac/mapDamage",
+	"content": "mapDamage: tracking and quantifying damage patterns in ancient DNA sequences"
 	},
-	"github/ekerrison/RadioSED": {
-	"id": "github/ekerrison/RadioSED",
-	"title": "github/ekerrison/RadioSED",
-	"url": " https://rseng.github.io/software/repository/github/ekerrison/RadioSED",
-	"content": "Radio SED fitting for AGN"
+	"github/gogetdata/ggd-utils": {
+	"id": "github/gogetdata/ggd-utils",
+	"title": "github/gogetdata/ggd-utils",
+	"url": " https://rseng.github.io/software/repository/github/gogetdata/ggd-utils",
+	"content": "programs for use in ggd"
 	},
-	"github/j-faria/kima": {
-	"id": "github/j-faria/kima",
-	"title": "github/j-faria/kima",
-	"url": " https://rseng.github.io/software/repository/github/j-faria/kima",
-	"content": "Exoplanet detection in RVs with DNest4 and GPs"
+	"github/agorajs/agora-forbid": {
+	"id": "github/agorajs/agora-forbid",
+	"title": "github/agorajs/agora-forbid",
+	"url": " https://rseng.github.io/software/repository/github/agorajs/agora-forbid",
+	"content": "None"
 	},
-	"github/davidsoergel/rtax": {
-	"id": "github/davidsoergel/rtax",
-	"title": "github/davidsoergel/rtax",
-	"url": " https://rseng.github.io/software/repository/github/davidsoergel/rtax",
-	"content": "Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene."
+	"github/agorajs/agora-vpsc": {
+	"id": "github/agorajs/agora-vpsc",
+	"title": "github/agorajs/agora-vpsc",
+	"url": " https://rseng.github.io/software/repository/github/agorajs/agora-vpsc",
+	"content": "VPSC adapter for agora-framework"
 	},
-	"github/Via-Appia/via-appia-online-viewer": {
-	"id": "github/Via-Appia/via-appia-online-viewer",
-	"title": "github/Via-Appia/via-appia-online-viewer",
-	"url": " https://rseng.github.io/software/repository/github/Via-Appia/via-appia-online-viewer",
-	"content": "Via Appia viewer application"
+	"github/paulhjkelly/taskgraph-metaprogramming": {
+	"id": "github/paulhjkelly/taskgraph-metaprogramming",
+	"title": "github/paulhjkelly/taskgraph-metaprogramming",
+	"url": " https://rseng.github.io/software/repository/github/paulhjkelly/taskgraph-metaprogramming",
+	"content": "The TaskGraph Meta-programming Library is a C++ package that supports run-time code generation - programs that generate code on the fly, then execute it.  And having built a piece of code, you can apply various transformations to it (such as loop interchange and tiling)."
 	},
-	"github/kjschmidlab/GGoutlieR": {
-	"id": "github/kjschmidlab/GGoutlieR",
-	"title": "github/kjschmidlab/GGoutlieR",
-	"url": " https://rseng.github.io/software/repository/github/kjschmidlab/GGoutlieR",
-	"content": "None"
+	"github/manzt/anywidget": {
+	"id": "github/manzt/anywidget",
+	"title": "github/manzt/anywidget",
+	"url": " https://rseng.github.io/software/repository/github/manzt/anywidget",
+	"content": "reusable widgets made easy"
 	},
-	"github/dokkum/maskfill": {
-	"id": "github/dokkum/maskfill",
-	"title": "github/dokkum/maskfill",
-	"url": " https://rseng.github.io/software/repository/github/dokkum/maskfill",
-	"content": "Fill in masked values in an image"
+	"github/NREL/G2Aero": {
+	"id": "github/NREL/G2Aero",
+	"title": "github/NREL/G2Aero",
+	"url": " https://rseng.github.io/software/repository/github/NREL/G2Aero",
+	"content": "Separable shape tensors for aerodynamic design"
 	},
-	"github/UCD4IDS/WaveletsExt.jl": {
-	"id": "github/UCD4IDS/WaveletsExt.jl",
-	"title": "github/UCD4IDS/WaveletsExt.jl",
-	"url": " https://rseng.github.io/software/repository/github/UCD4IDS/WaveletsExt.jl",
-	"content": "A Julia extension package to Wavelets.jl"
+	"github/NREL/OpenOA": {
+	"id": "github/NREL/OpenOA",
+	"title": "github/NREL/OpenOA",
+	"url": " https://rseng.github.io/software/repository/github/NREL/OpenOA",
+	"content": "This library provides a framework for working with large timeseries data from wind plants, such as SCADA. Its development has been motivated by the WP3 Benchmarking (PRUF) project, which aims to provide a reference implementation for plant-level performance assessment."
 	},
-	"github/AMReX-Astro/MAESTROeX": {
-	"id": "github/AMReX-Astro/MAESTROeX",
-	"title": "github/AMReX-Astro/MAESTROeX",
-	"url": " https://rseng.github.io/software/repository/github/AMReX-Astro/MAESTROeX",
-	"content": "A C++ low Mach number stellar hydrodynamics code"
+	"github/NREL/graph-env": {
+	"id": "github/NREL/graph-env",
+	"title": "github/NREL/graph-env",
+	"url": " https://rseng.github.io/software/repository/github/NREL/graph-env",
+	"content": "Reinforcement learning for combinatorial optimization over directed graphs"
 	},
-	"github/AMReX-Astro/Nyx": {
-	"id": "github/AMReX-Astro/Nyx",
-	"title": "github/AMReX-Astro/Nyx",
-	"url": " https://rseng.github.io/software/repository/github/AMReX-Astro/Nyx",
-	"content": "An adaptive mesh, N-body hydro cosmological simulation code"
+	"github/TeamPerie/CellDestiny": {
+	"id": "github/TeamPerie/CellDestiny",
+	"title": "github/TeamPerie/CellDestiny",
+	"url": " https://rseng.github.io/software/repository/github/TeamPerie/CellDestiny",
+	"content": "None"
 	},
-	"github/AMReX-Astro/Castro": {
-	"id": "github/AMReX-Astro/Castro",
-	"title": "github/AMReX-Astro/Castro",
-	"url": " https://rseng.github.io/software/repository/github/AMReX-Astro/Castro",
-	"content": "Castro (Compressible Astrophysics): An adaptive mesh, astrophysical compressible (radiation-, magneto-)  hydrodynamics simulation code for massively parallel CPU and GPU architectures."
+	"github/Extraweich/homopy": {
+	"id": "github/Extraweich/homopy",
+	"title": "github/Extraweich/homopy",
+	"url": " https://rseng.github.io/software/repository/github/Extraweich/homopy",
+	"content": "Your solution for stiffness problems"
 	},
-	"github/AMReX-Astro/wdmerger": {
-	"id": "github/AMReX-Astro/wdmerger",
-	"title": "github/AMReX-Astro/wdmerger",
-	"url": " https://rseng.github.io/software/repository/github/AMReX-Astro/wdmerger",
-	"content": "A software package for simulating white dwarf mergers with CASTRO"
+	"github/ndaniel/fusioncatcher": {
+	"id": "github/ndaniel/fusioncatcher",
+	"title": "github/ndaniel/fusioncatcher",
+	"url": " https://rseng.github.io/software/repository/github/ndaniel/fusioncatcher",
+	"content": "Finder of Somatic Fusion Genes in RNA-seq data"
 	},
-	"github/vwesselkamp/ernie-extension": {
-	"id": "github/vwesselkamp/ernie-extension",
-	"title": "github/vwesselkamp/ernie-extension",
-	"url": " https://rseng.github.io/software/repository/github/vwesselkamp/ernie-extension",
-	"content": "Contains the source code of the extension ERNIE from the WPES 2021 paper &#34;In-Depth Technical and Legal Analysis of Tracking on Health Related Websites with ERNIE Extension&#34;"
+	"github/genomehubs/goat-cli": {
+	"id": "github/genomehubs/goat-cli",
+	"title": "github/genomehubs/goat-cli",
+	"url": " https://rseng.github.io/software/repository/github/genomehubs/goat-cli",
+	"content": "Command Line Interface for Genomes on a Tree."
 	},
-	"github/FDPS/FDPS": {
-	"id": "github/FDPS/FDPS",
-	"title": "github/FDPS/FDPS",
-	"url": " https://rseng.github.io/software/repository/github/FDPS/FDPS",
-	"content": "Github repository for FDPS"
+	"github/AStcherbinine/omegapy": {
+	"id": "github/AStcherbinine/omegapy",
+	"title": "github/AStcherbinine/omegapy",
+	"url": " https://rseng.github.io/software/repository/github/AStcherbinine/omegapy",
+	"content": "Python tools for OMEGA/MEx observation data (importation/correction/display)."
 	},
-	"github/smeingast/PNICER": {
-	"id": "github/smeingast/PNICER",
-	"title": "github/smeingast/PNICER",
-	"url": " https://rseng.github.io/software/repository/github/smeingast/PNICER",
+	"github/sevimcengiz/Oryx-MRSI": {
+	"id": "github/sevimcengiz/Oryx-MRSI",
+	"title": "github/sevimcengiz/Oryx-MRSI",
+	"url": " https://rseng.github.io/software/repository/github/sevimcengiz/Oryx-MRSI",
 	"content": "None"
 	},
-	"github/lkmklsmn/DrivAER": {
-	"id": "github/lkmklsmn/DrivAER",
-	"title": "github/lkmklsmn/DrivAER",
-	"url": " https://rseng.github.io/software/repository/github/lkmklsmn/DrivAER",
-	"content": "DrivAER: Identification of Driving transcriptional programs using AutoEncoder based Relevance scores"
+	"github/Electrostatics/apbs": {
+	"id": "github/Electrostatics/apbs",
+	"title": "github/Electrostatics/apbs",
+	"url": " https://rseng.github.io/software/repository/github/Electrostatics/apbs",
+	"content": "Software for biomolecular electrostatics and solvation calculations"
 	},
-	"github/AstroVPK/kali": {
-	"id": "github/AstroVPK/kali",
-	"title": "github/AstroVPK/kali",
-	"url": " https://rseng.github.io/software/repository/github/AstroVPK/kali",
-	"content": "A library to model a time series as a Continuous-time ARMA process"
+	"github/research-software-directory/research-software-directory": {
+	"id": "github/research-software-directory/research-software-directory",
+	"title": "github/research-software-directory/research-software-directory",
+	"url": " https://rseng.github.io/software/repository/github/research-software-directory/research-software-directory",
+	"content": "The Research Software Directory is a content management system that is tailored to software."
 	},
-	"github/onnela-lab/beiwe-backend": {
-	"id": "github/onnela-lab/beiwe-backend",
-	"title": "github/onnela-lab/beiwe-backend",
-	"url": " https://rseng.github.io/software/repository/github/onnela-lab/beiwe-backend",
-	"content": "Beiwe is a smartphone-based digital phenotyping research platform. This is the Beiwe backend code"
+	"github/dmnfarrell/epitopepredict": {
+	"id": "github/dmnfarrell/epitopepredict",
+	"title": "github/dmnfarrell/epitopepredict",
+	"url": " https://rseng.github.io/software/repository/github/dmnfarrell/epitopepredict",
+	"content": "Python package  and command line tool for epitope prediction"
 	},
-	"github/atzberg/mlmod": {
-	"id": "github/atzberg/mlmod",
-	"title": "github/atzberg/mlmod",
-	"url": " https://rseng.github.io/software/repository/github/atzberg/mlmod",
-	"content": "Machine learning package for data-driven modeling and simulation in LAMMPs."
+	"github/dmnfarrell/snpgenie": {
+	"id": "github/dmnfarrell/snpgenie",
+	"title": "github/dmnfarrell/snpgenie",
+	"url": " https://rseng.github.io/software/repository/github/dmnfarrell/snpgenie",
+	"content": "command line and desktop tool for microbial variant calling"
 	},
-	"github/EACcodes/TigerCI": {
-	"id": "github/EACcodes/TigerCI",
-	"title": "github/EACcodes/TigerCI",
-	"url": " https://rseng.github.io/software/repository/github/EACcodes/TigerCI",
-	"content": "None"
+	"github/ColdThunder/NR-code": {
+	"id": "github/ColdThunder/NR-code",
+	"title": "github/ColdThunder/NR-code",
+	"url": " https://rseng.github.io/software/repository/github/ColdThunder/NR-code",
+	"content": "Nonlinear reconstruction code"
 	},
-	"github/jteutenberg/downpore": {
-	"id": "github/jteutenberg/downpore",
-	"title": "github/jteutenberg/downpore",
-	"url": " https://rseng.github.io/software/repository/github/jteutenberg/downpore",
-	"content": "a suite of tools for use in genome assembly and consensus."
+	"github/FraunhoferIWES/foxes": {
+	"id": "github/FraunhoferIWES/foxes",
+	"title": "github/FraunhoferIWES/foxes",
+	"url": " https://rseng.github.io/software/repository/github/FraunhoferIWES/foxes",
+	"content": "Farm Optimization and eXtended yield Evaluation Software"
 	},
-	"github/Goobley/Radynversion": {
-	"id": "github/Goobley/Radynversion",
-	"title": "github/Goobley/Radynversion",
-	"url": " https://rseng.github.io/software/repository/github/Goobley/Radynversion",
-	"content": "Inverting Solar Flare Observations with Invertible Neural Nets (with RADYN physics) "
+	"github/ryanhausen/fitsmap": {
+	"id": "github/ryanhausen/fitsmap",
+	"title": "github/ryanhausen/fitsmap",
+	"url": " https://rseng.github.io/software/repository/github/ryanhausen/fitsmap",
+	"content": "FitsMap: A Simple, Lightweight Tool For Displaying Interactive Astronomical Image and Catalog Data"
 	},
-	"github/ECSHackWeek/impedance.py": {
-	"id": "github/ECSHackWeek/impedance.py",
-	"title": "github/ECSHackWeek/impedance.py",
-	"url": " https://rseng.github.io/software/repository/github/ECSHackWeek/impedance.py",
-	"content": "A Python package for working with electrochemical impedance data"
+	"github/debbiemarkslab/plmc": {
+	"id": "github/debbiemarkslab/plmc",
+	"title": "github/debbiemarkslab/plmc",
+	"url": " https://rseng.github.io/software/repository/github/debbiemarkslab/plmc",
+	"content": "Inference of couplings in proteins and RNAs from sequence variation"
 	},
-	"github/shergreen/SatGen": {
-	"id": "github/shergreen/SatGen",
-	"title": "github/shergreen/SatGen",
-	"url": " https://rseng.github.io/software/repository/github/shergreen/SatGen",
-	"content": "A semi-analytical satellite galaxy and dark matter halo generator"
+	"github/churchmanlab/genewalk": {
+	"id": "github/churchmanlab/genewalk",
+	"title": "github/churchmanlab/genewalk",
+	"url": " https://rseng.github.io/software/repository/github/churchmanlab/genewalk",
+	"content": "GeneWalk identifies relevant gene functions for a biological context using network representation learning"
 	},
-	"github/Planet-AI-GmbH/tfaip": {
-	"id": "github/Planet-AI-GmbH/tfaip",
-	"title": "github/Planet-AI-GmbH/tfaip",
-	"url": " https://rseng.github.io/software/repository/github/Planet-AI-GmbH/tfaip",
-	"content": "Python-based research framework for developing, organizing, and deploying Deep Learning models powered by Tensorflow."
+	"github/perfanalytics/pose2sim": {
+	"id": "github/perfanalytics/pose2sim",
+	"title": "github/perfanalytics/pose2sim",
+	"url": " https://rseng.github.io/software/repository/github/perfanalytics/pose2sim",
+	"content": "Markerless kinematics, from OpenPose to OpenSim"
 	},
-	"github/cloudflex-project/cloudflex": {
-	"id": "github/cloudflex-project/cloudflex",
-	"title": "github/cloudflex-project/cloudflex",
-	"url": " https://rseng.github.io/software/repository/github/cloudflex-project/cloudflex",
-	"content": "None"
+	"github/mfem/mfem": {
+	"id": "github/mfem/mfem",
+	"title": "github/mfem/mfem",
+	"url": " https://rseng.github.io/software/repository/github/mfem/mfem",
+	"content": "Lightweight, general, scalable C++ library for finite element methods"
 	},
-	"github/abschneider/StrainHub": {
-	"id": "github/abschneider/StrainHub",
-	"title": "github/abschneider/StrainHub",
-	"url": " https://rseng.github.io/software/repository/github/abschneider/StrainHub",
-	"content": "Welcome to the StrainHub Repo - Files and Data - StrainHub Online:"
+	"github/sciapp/sampledb": {
+	"id": "github/sciapp/sampledb",
+	"title": "github/sciapp/sampledb",
+	"url": " https://rseng.github.io/software/repository/github/sciapp/sampledb",
+	"content": "Sample and Measurement Metadata Database"
 	},
-	"github/automl/amltk": {
-	"id": "github/automl/amltk",
-	"title": "github/automl/amltk",
-	"url": " https://rseng.github.io/software/repository/github/automl/amltk",
-	"content": "A build-it-yourself AutoML Framework"
+	"github/epruesse/SINA": {
+	"id": "github/epruesse/SINA",
+	"title": "github/epruesse/SINA",
+	"url": " https://rseng.github.io/software/repository/github/epruesse/SINA",
+	"content": "SINA - Reference based multiple sequence alignment"
+	},
+	"github/davideamato/NAPLES": {
+	"id": "github/davideamato/NAPLES",
+	"title": "github/davideamato/NAPLES",
+	"url": " https://rseng.github.io/software/repository/github/davideamato/NAPLES",
+	"content": "NAPLES (Numerical Analysis of PLanetary EncounterS) is a Fortran code for the numerical analysis of close encounters in the Circular, Restricted Three-Body Problem using regularized formulations."
 	},
 	"github/kadyb/rgugik": {
 	"id": "github/kadyb/rgugik",
@@ -31317,11 +31275,47 @@
 	"url": " https://rseng.github.io/software/repository/github/kadyb/rgugik",
 	"content": "Download datasets from Polish Head Office of Geodesy and Cartography"
 	},
-	"github/churchmanlab/genewalk": {
-	"id": "github/churchmanlab/genewalk",
-	"title": "github/churchmanlab/genewalk",
-	"url": " https://rseng.github.io/software/repository/github/churchmanlab/genewalk",
-	"content": "GeneWalk identifies relevant gene functions for a biological context using network representation learning"
+	"github/choosehappy/HoverFast": {
+	"id": "github/choosehappy/HoverFast",
+	"title": "github/choosehappy/HoverFast",
+	"url": " https://rseng.github.io/software/repository/github/choosehappy/HoverFast",
+	"content": "Blazing fast nuclei segmentation for brightfield Whole Slide Images"
+	},
+	"github/cosmostat/pmclib": {
+	"id": "github/cosmostat/pmclib",
+	"title": "github/cosmostat/pmclib",
+	"url": " https://rseng.github.io/software/repository/github/cosmostat/pmclib",
+	"content": "Population Monte Carlo (PMC) library"
+	},
+	"github/cosmostat/nicaea": {
+	"id": "github/cosmostat/nicaea",
+	"title": "github/cosmostat/nicaea",
+	"url": " https://rseng.github.io/software/repository/github/cosmostat/nicaea",
+	"content": "Numerical routines to calculate cosmology and weak-lensing quantities."
+	},
+	"github/cosmostat/CosmoPMC": {
+	"id": "github/cosmostat/CosmoPMC",
+	"title": "github/cosmostat/CosmoPMC",
+	"url": " https://rseng.github.io/software/repository/github/cosmostat/CosmoPMC",
+	"content": "Cosmology sampling with Population Monte Carlo (PMC)"
+	},
+	"github/SCECcode/pycsep": {
+	"id": "github/SCECcode/pycsep",
+	"title": "github/SCECcode/pycsep",
+	"url": " https://rseng.github.io/software/repository/github/SCECcode/pycsep",
+	"content": "Tools to help earthquake forecast model developers build and evaluate their forecasts"
+	},
+	"github/rossfadely/star-galaxy-classification": {
+	"id": "github/rossfadely/star-galaxy-classification",
+	"title": "github/rossfadely/star-galaxy-classification",
+	"url": " https://rseng.github.io/software/repository/github/rossfadely/star-galaxy-classification",
+	"content": "Classification of astronomical objects using photometry"
+	},
+	"github/tronsgaard/barycorr": {
+	"id": "github/tronsgaard/barycorr",
+	"title": "github/tronsgaard/barycorr",
+	"url": " https://rseng.github.io/software/repository/github/tronsgaard/barycorr",
+	"content": "Python interface for barycentric correction web applets"
 	},
 	"github/flatironinstitute/nifty-ls": {
 	"id": "github/flatironinstitute/nifty-ls",
@@ -31329,1679 +31323,1691 @@
 	"url": " https://rseng.github.io/software/repository/github/flatironinstitute/nifty-ls",
 	"content": "A fast Lomb-Scargle periodogram. It&#39;s nifty, and uses a NUFFT!"
 	},
-	"github/ClaudioZandonella/PRDA": {
-	"id": "github/ClaudioZandonella/PRDA",
-	"title": "github/ClaudioZandonella/PRDA",
-	"url": " https://rseng.github.io/software/repository/github/ClaudioZandonella/PRDA",
-	"content": "Prospective and Retrospective Design Analysis"
-	},
-	"github/vedantchandra/wdtools": {
-	"id": "github/vedantchandra/wdtools",
-	"title": "github/vedantchandra/wdtools",
-	"url": " https://rseng.github.io/software/repository/github/vedantchandra/wdtools",
-	"content": "computational tools for the spectroscopic analysis of white dwarfs"
-	},
-	"github/orbisgis/lczexplore": {
-	"id": "github/orbisgis/lczexplore",
-	"title": "github/orbisgis/lczexplore",
-	"url": " https://rseng.github.io/software/repository/github/orbisgis/lczexplore",
-	"content": "None"
+	"github/nhcrisp/ADBSat": {
+	"id": "github/nhcrisp/ADBSat",
+	"title": "github/nhcrisp/ADBSat",
+	"url": " https://rseng.github.io/software/repository/github/nhcrisp/ADBSat",
+	"content": "Aerodynamic Database for Satellites"
 	},
-	"github/josegit88/SCORPIO": {
-	"id": "github/josegit88/SCORPIO",
-	"title": "github/josegit88/SCORPIO",
-	"url": " https://rseng.github.io/software/repository/github/josegit88/SCORPIO",
-	"content": "Sky COllector of galaxy Pairs and Image Output"
+	"github/Singh-Lab/DeMaSk": {
+	"id": "github/Singh-Lab/DeMaSk",
+	"title": "github/Singh-Lab/DeMaSk",
+	"url": " https://rseng.github.io/software/repository/github/Singh-Lab/DeMaSk",
+	"content": "Prediction of protein substitution impact using a directional substitution matrix and homolog alignments"
 	},
-	"github/mary77/scQcut": {
-	"id": "github/mary77/scQcut",
-	"title": "github/mary77/scQcut",
-	"url": " https://rseng.github.io/software/repository/github/mary77/scQcut",
-	"content": "A completely parameter-free method for graph-based single cell RNA-seq clustering"
+	"github/Singh-Lab/uKIN": {
+	"id": "github/Singh-Lab/uKIN",
+	"title": "github/Singh-Lab/uKIN",
+	"url": " https://rseng.github.io/software/repository/github/Singh-Lab/uKIN",
+	"content": "Using Knowledge In Networks"
 	},
-	"github/marieBvr/virAnnot": {
-	"id": "github/marieBvr/virAnnot",
-	"title": "github/marieBvr/virAnnot",
-	"url": " https://rseng.github.io/software/repository/github/marieBvr/virAnnot",
-	"content": "None"
+	"github/galizia-lab/pyview": {
+	"id": "github/galizia-lab/pyview",
+	"title": "github/galizia-lab/pyview",
+	"url": " https://rseng.github.io/software/repository/github/galizia-lab/pyview",
+	"content": "GUI + API for processing and visualizing Calcium imaging data.  Largely based on the IDL software &#34;VIEW&#34; developed by Giovanni Galizia. Implemented in Python by Ajayrama Kumaraswamy"
 	},
-	"github/xoopR/set6": {
-	"id": "github/xoopR/set6",
-	"title": "github/xoopR/set6",
-	"url": " https://rseng.github.io/software/repository/github/xoopR/set6",
-	"content": "R6 object-oriented interface for mathematical sets."
+	"github/ajosephy/Clustering": {
+	"id": "github/ajosephy/Clustering",
+	"title": "github/ajosephy/Clustering",
+	"url": " https://rseng.github.io/software/repository/github/ajosephy/Clustering",
+	"content": "Modified RRATrap + new DBSCAN codes to cluster single pulse events."
 	},
-	"github/nand1155/CausNet": {
-	"id": "github/nand1155/CausNet",
-	"title": "github/nand1155/CausNet",
-	"url": " https://rseng.github.io/software/repository/github/nand1155/CausNet",
-	"content": "Generational orderings based search for optimal Bayesian networks via dynamic programming with parent set constraints"
+	"github/ImperialCollegeLondon/rcs-pacemakers": {
+	"id": "github/ImperialCollegeLondon/rcs-pacemakers",
+	"title": "github/ImperialCollegeLondon/rcs-pacemakers",
+	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/rcs-pacemakers",
+	"content": "Example of GPU-accelerated machine learning on the RCS compute cluster using Jupyter and conda"
 	},
-	"github/pkestene/ramsesGPU": {
-	"id": "github/pkestene/ramsesGPU",
-	"title": "github/pkestene/ramsesGPU",
-	"url": " https://rseng.github.io/software/repository/github/pkestene/ramsesGPU",
-	"content": "Astrophysics MHD simulation code optimized for large cluster of GPU"
+	"github/ImperialCollegeLondon/R2T2": {
+	"id": "github/ImperialCollegeLondon/R2T2",
+	"title": "github/ImperialCollegeLondon/R2T2",
+	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/R2T2",
+	"content": "Research References Tracking Tool"
 	},
-	"github/pkestene/xsmurf": {
-	"id": "github/pkestene/xsmurf",
-	"title": "github/pkestene/xsmurf",
-	"url": " https://rseng.github.io/software/repository/github/pkestene/xsmurf",
-	"content": "a wavelet-based multifractal image analysis tool implementing the WTMM (Wavelet Transform Modulus Maxima) method."
+	"github/ImperialCollegeLondon/covid19model": {
+	"id": "github/ImperialCollegeLondon/covid19model",
+	"title": "github/ImperialCollegeLondon/covid19model",
+	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/covid19model",
+	"content": "Code for modelling estimated deaths and cases for COVID19. "
 	},
-	"github/ks905383/xagg": {
-	"id": "github/ks905383/xagg",
-	"title": "github/ks905383/xagg",
-	"url": " https://rseng.github.io/software/repository/github/ks905383/xagg",
-	"content": "Aggregating gridded data (xarray) to polygons"
+	"github/ImperialCollegeLondon/WInc3D": {
+	"id": "github/ImperialCollegeLondon/WInc3D",
+	"title": "github/ImperialCollegeLondon/WInc3D",
+	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/WInc3D",
+	"content": "Wind Farm Simulator"
 	},
-	"github/abonaldi/TRECS": {
-	"id": "github/abonaldi/TRECS",
-	"title": "github/abonaldi/TRECS",
-	"url": " https://rseng.github.io/software/repository/github/abonaldi/TRECS",
-	"content": "This repository contains the code used to produce the Tiered Radio Extragalactic Continuum Simulation (T-RECS, Bonaldi et al. 2018)"
+	"github/ImperialCollegeLondon/safedata": {
+	"id": "github/ImperialCollegeLondon/safedata",
+	"title": "github/ImperialCollegeLondon/safedata",
+	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/safedata",
+	"content": "An R package for discovering and using data from the SAFE Project"
 	},
-	"github/sevenstarknight/SSMM": {
-	"id": "github/sevenstarknight/SSMM",
-	"title": "github/sevenstarknight/SSMM",
-	"url": " https://rseng.github.io/software/repository/github/sevenstarknight/SSMM",
-	"content": "Variable Star Signature Classification using Slotted Symbolic Markov Modeling"
+	"github/ImperialCollegeLondon/magda_tools": {
+	"id": "github/ImperialCollegeLondon/magda_tools",
+	"title": "github/ImperialCollegeLondon/magda_tools",
+	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/magda_tools",
+	"content": "A collection of tools for working with MAGDA data files"
 	},
-	"github/sevenstarknight/LINEARSupervisedClassification": {
-	"id": "github/sevenstarknight/LINEARSupervisedClassification",
-	"title": "github/sevenstarknight/LINEARSupervisedClassification",
-	"url": " https://rseng.github.io/software/repository/github/sevenstarknight/LINEARSupervisedClassification",
-	"content": "The initial analysis of LINEAR data using supervised classification methods."
+	"github/ImperialCollegeLondon/sap-voicebox": {
+	"id": "github/ImperialCollegeLondon/sap-voicebox",
+	"title": "github/ImperialCollegeLondon/sap-voicebox",
+	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/sap-voicebox",
+	"content": "Speech Processing Toolbox for MATLAB"
 	},
-	"github/sevenstarknight/OCDetector": {
-	"id": "github/sevenstarknight/OCDetector",
-	"title": "github/sevenstarknight/OCDetector",
-	"url": " https://rseng.github.io/software/repository/github/sevenstarknight/OCDetector",
-	"content": "O&#39;Connell Effect Detector using Push-Pull Learning"
+	"github/ImperialCollegeLondon/adam": {
+	"id": "github/ImperialCollegeLondon/adam",
+	"title": "github/ImperialCollegeLondon/adam",
+	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/adam",
+	"content": "None"
 	},
-	"github/sevenstarknight/VariableStarAnalysis": {
-	"id": "github/sevenstarknight/VariableStarAnalysis",
-	"title": "github/sevenstarknight/VariableStarAnalysis",
-	"url": " https://rseng.github.io/software/repository/github/sevenstarknight/VariableStarAnalysis",
+	"github/ImperialCollegeLondon/champ": {
+	"id": "github/ImperialCollegeLondon/champ",
+	"title": "github/ImperialCollegeLondon/champ",
+	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/champ",
 	"content": "None"
 	},
-	"github/AndreyTavleev/DiscVerSt": {
-	"id": "github/AndreyTavleev/DiscVerSt",
-	"title": "github/AndreyTavleev/DiscVerSt",
-	"url": " https://rseng.github.io/software/repository/github/AndreyTavleev/DiscVerSt",
-	"content": "Code calculates vertical structure of accretion discs around neutron stars and black holes."
+	"github/ImperialCollegeLondon/django-drf-filepond": {
+	"id": "github/ImperialCollegeLondon/django-drf-filepond",
+	"title": "github/ImperialCollegeLondon/django-drf-filepond",
+	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/django-drf-filepond",
+	"content": "A Django app providing a server implemention for the Filepond file upload library"
 	},
-	"github/vincentlab/PyFR": {
-	"id": "github/vincentlab/PyFR",
-	"title": "github/vincentlab/PyFR",
-	"url": " https://rseng.github.io/software/repository/github/vincentlab/PyFR",
-	"content": "PyFR"
+	"github/ImperialCollegeLondon/pytest_template_application": {
+	"id": "github/ImperialCollegeLondon/pytest_template_application",
+	"title": "github/ImperialCollegeLondon/pytest_template_application",
+	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/pytest_template_application",
+	"content": "Python application template with automated QA and Docker image publishing"
 	},
-	"github/nextflow-io/nextflow": {
-	"id": "github/nextflow-io/nextflow",
-	"title": "github/nextflow-io/nextflow",
-	"url": " https://rseng.github.io/software/repository/github/nextflow-io/nextflow",
-	"content": "A DSL for data-driven computational pipelines"
+	"github/ImperialCollegeLondon/research-software-directory-data": {
+	"id": "github/ImperialCollegeLondon/research-software-directory-data",
+	"title": "github/ImperialCollegeLondon/research-software-directory-data",
+	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/research-software-directory-data",
+	"content": "Imperial College Research Software Directory"
 	},
-	"github/pyFFTW/pyFFTW": {
-	"id": "github/pyFFTW/pyFFTW",
-	"title": "github/pyFFTW/pyFFTW",
-	"url": " https://rseng.github.io/software/repository/github/pyFFTW/pyFFTW",
-	"content": "A pythonic python wrapper around FFTW"
+	"github/ImperialCollegeLondon/rcs_cluster_scripts": {
+	"id": "github/ImperialCollegeLondon/rcs_cluster_scripts",
+	"title": "github/ImperialCollegeLondon/rcs_cluster_scripts",
+	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/rcs_cluster_scripts",
+	"content": "A collection of handy scripts for use with the Imperial College Research Computing Service cluster"
 	},
-	"github/mariakotouza/TRIP-Tool": {
-	"id": "github/mariakotouza/TRIP-Tool",
-	"title": "github/mariakotouza/TRIP-Tool",
-	"url": " https://rseng.github.io/software/repository/github/mariakotouza/TRIP-Tool",
-	"content": "Antigen receptor gene profiler: A software framework that provides analytics services on NGS Data"
+	"github/ImperialCollegeLondon/EpiCollectplus": {
+	"id": "github/ImperialCollegeLondon/EpiCollectplus",
+	"title": "github/ImperialCollegeLondon/EpiCollectplus",
+	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/EpiCollectplus",
+	"content": "The next generation of EpiCollect, multiple forms, more fields and more control. We recommend using Apache 2.2 or later, PHP 5.3 or later and MySQL 5.5 or later."
 	},
-	"github/SchmollerLab/Cell_ACDC": {
-	"id": "github/SchmollerLab/Cell_ACDC",
-	"title": "github/SchmollerLab/Cell_ACDC",
-	"url": " https://rseng.github.io/software/repository/github/SchmollerLab/Cell_ACDC",
-	"content": "A Python GUI-based framework for segmentation, tracking and cell cycle annotations of micrscopy data"
+	"github/ImperialCollegeLondon/sharpy": {
+	"id": "github/ImperialCollegeLondon/sharpy",
+	"title": "github/ImperialCollegeLondon/sharpy",
+	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/sharpy",
+	"content": "Simulation of High Aspect Ratio aeroplanes and wind turbines in Python: a nonlinear aeroelastic code"
 	},
-	"github/RWTH-EBC/AixCaliBuHA": {
-	"id": "github/RWTH-EBC/AixCaliBuHA",
-	"title": "github/RWTH-EBC/AixCaliBuHA",
-	"url": " https://rseng.github.io/software/repository/github/RWTH-EBC/AixCaliBuHA",
-	"content": "Wield this tool to be King Arthur of your models."
+	"github/ImperialCollegeLondon/UVLM": {
+	"id": "github/ImperialCollegeLondon/UVLM",
+	"title": "github/ImperialCollegeLondon/UVLM",
+	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/UVLM",
+	"content": "Unsteady Vortex Lattice Method for Aeroelasticity in C++"
 	},
-	"github/RWTH-EBC/FiLiP": {
-	"id": "github/RWTH-EBC/FiLiP",
-	"title": "github/RWTH-EBC/FiLiP",
-	"url": " https://rseng.github.io/software/repository/github/RWTH-EBC/FiLiP",
-	"content": "FIWARE Library for Python (FiLiP) to work with FIWARE API"
+	"github/ImperialCollegeLondon/epidemia": {
+	"id": "github/ImperialCollegeLondon/epidemia",
+	"title": "github/ImperialCollegeLondon/epidemia",
+	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/epidemia",
+	"content": "epidemia package"
 	},
-	"github/bengeof/QPoweredCompound2DeNovoDrugPropMax": {
-	"id": "github/bengeof/QPoweredCompound2DeNovoDrugPropMax",
-	"title": "github/bengeof/QPoweredCompound2DeNovoDrugPropMax",
-	"url": " https://rseng.github.io/software/repository/github/bengeof/QPoweredCompound2DeNovoDrugPropMax",
-	"content": "None"
+	"github/ImperialCollegeLondon/fractalgenetics": {
+	"id": "github/ImperialCollegeLondon/fractalgenetics",
+	"title": "github/ImperialCollegeLondon/fractalgenetics",
+	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/fractalgenetics",
+	"content": "Analysis of the genomic architecture and functional role of myocardial trabeculae"
 	},
-	"github/INRS-France/predicting_alarm_audibility": {
-	"id": "github/INRS-France/predicting_alarm_audibility",
-	"title": "github/INRS-France/predicting_alarm_audibility",
-	"url": " https://rseng.github.io/software/repository/github/INRS-France/predicting_alarm_audibility",
-	"content": "This Python code is derived from the research article &#34;Evaluating and Predicting the Audibility of Acoustic Alarms in the Workplace Using Experimental Methods and Deep Learning&#34; published in the journal Applied Acoustics. It provides a framework for predicting the audibility of acoustic alarms in noise, and includes scripts to reproduce the results"
+	"github/ImperialCollegeLondon/hcga": {
+	"id": "github/ImperialCollegeLondon/hcga",
+	"title": "github/ImperialCollegeLondon/hcga",
+	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/hcga",
+	"content": "Highly Comparative Graph Analysis - Code for network phenotyping "
 	},
-	"github/baoxingsong/AnchorWave": {
-	"id": "github/baoxingsong/AnchorWave",
-	"title": "github/baoxingsong/AnchorWave",
-	"url": " https://rseng.github.io/software/repository/github/baoxingsong/AnchorWave",
-	"content": "Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation"
+	"github/ImperialCollegeLondon/ICLOCS": {
+	"id": "github/ImperialCollegeLondon/ICLOCS",
+	"title": "github/ImperialCollegeLondon/ICLOCS",
+	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/ICLOCS",
+	"content": "Imperial College London Optimal Control Software (ICLOCS)"
 	},
-	"github/jhayer/baargin": {
-	"id": "github/jhayer/baargin",
-	"title": "github/jhayer/baargin",
-	"url": " https://rseng.github.io/software/repository/github/jhayer/baargin",
-	"content": "Bacterial Assembly and Antimicrobial Resistance Genes In NextFlow"
+	"github/tbisbas/PDFchem": {
+	"id": "github/tbisbas/PDFchem",
+	"title": "github/tbisbas/PDFchem",
+	"url": " https://rseng.github.io/software/repository/github/tbisbas/PDFchem",
+	"content": "Estimate the average abundance of species from Av-PDFs"
 	},
-	"github/alastair-droop/fqtools": {
-	"id": "github/alastair-droop/fqtools",
-	"title": "github/alastair-droop/fqtools",
-	"url": " https://rseng.github.io/software/repository/github/alastair-droop/fqtools",
-	"content": "An efficient FASTQ manipulation suite"
+	"github/Effective-Quadratures/Effective-Quadratures": {
+	"id": "github/Effective-Quadratures/Effective-Quadratures",
+	"title": "github/Effective-Quadratures/Effective-Quadratures",
+	"url": " https://rseng.github.io/software/repository/github/Effective-Quadratures/Effective-Quadratures",
+	"content": "None"
 	},
-	"github/jacksund/simmate": {
-	"id": "github/jacksund/simmate",
-	"title": "github/jacksund/simmate",
-	"url": " https://rseng.github.io/software/repository/github/jacksund/simmate",
-	"content": "The Simulated Materials Ecosystem (Simmate) is a toolbox and framework for computational materials research."
+	"github/GenomicParisCentre/toulligQC": {
+	"id": "github/GenomicParisCentre/toulligQC",
+	"title": "github/GenomicParisCentre/toulligQC",
+	"url": " https://rseng.github.io/software/repository/github/GenomicParisCentre/toulligQC",
+	"content": "A post sequencing QC tool for Oxford Nanopore sequencers"
 	},
-	"github/Markusjsommer/BalrogCPP": {
-	"id": "github/Markusjsommer/BalrogCPP",
-	"title": "github/Markusjsommer/BalrogCPP",
-	"url": " https://rseng.github.io/software/repository/github/Markusjsommer/BalrogCPP",
-	"content": "A universal protein model for prokaryotic gene prediction"
+	"github/biswajitmb/DarpanX": {
+	"id": "github/biswajitmb/DarpanX",
+	"title": "github/biswajitmb/DarpanX",
+	"url": " https://rseng.github.io/software/repository/github/biswajitmb/DarpanX",
+	"content": "DarpanX is a Python 3 package that provides functionality to compute reflectivity and other specular optical functions of a multilayer or single layer mirror for different energy and angles as well as to fit the XRR measurements of the mirrors."
 	},
-	"github/Multiversario/satcand": {
-	"id": "github/Multiversario/satcand",
-	"title": "github/Multiversario/satcand",
-	"url": " https://rseng.github.io/software/repository/github/Multiversario/satcand",
-	"content": "Tools to apply theoretical constraints of orbital stability and tidal migration to KOI exomoon candidates. "
+	"github/mdshw5/pyfaidx": {
+	"id": "github/mdshw5/pyfaidx",
+	"title": "github/mdshw5/pyfaidx",
+	"url": " https://rseng.github.io/software/repository/github/mdshw5/pyfaidx",
+	"content": "Efficient pythonic random access to fasta subsequences"
 	},
-	"github/fjankowsk/scatfit": {
-	"id": "github/fjankowsk/scatfit",
-	"title": "github/fjankowsk/scatfit",
-	"url": " https://rseng.github.io/software/repository/github/fjankowsk/scatfit",
-	"content": "Scattering fits of Fast Radio Burst and pulsar data."
+	"github/yaml2sbml-dev/yaml2sbml": {
+	"id": "github/yaml2sbml-dev/yaml2sbml",
+	"title": "github/yaml2sbml-dev/yaml2sbml",
+	"url": " https://rseng.github.io/software/repository/github/yaml2sbml-dev/yaml2sbml",
+	"content": "Little tool to convert an ODE model specified in the YAML format to SBML."
 	},
-	"github/abrupt-climate/hyper-canny": {
-	"id": "github/abrupt-climate/hyper-canny",
-	"title": "github/abrupt-climate/hyper-canny",
-	"url": " https://rseng.github.io/software/repository/github/abrupt-climate/hyper-canny",
-	"content": "High dimensional Canny edge detection"
+	"github/alexriss/SpmImageTycoon.jl": {
+	"id": "github/alexriss/SpmImageTycoon.jl",
+	"title": "github/alexriss/SpmImageTycoon.jl",
+	"url": " https://rseng.github.io/software/repository/github/alexriss/SpmImageTycoon.jl",
+	"content": "Organize Scanning Probe Microscopy (SPM, STM, AFM) Images and Spectra."
 	},
-	"github/Ramialison-Lab-ARMI/3DCardiomics": {
-	"id": "github/Ramialison-Lab-ARMI/3DCardiomics",
-	"title": "github/Ramialison-Lab-ARMI/3DCardiomics",
-	"url": " https://rseng.github.io/software/repository/github/Ramialison-Lab-ARMI/3DCardiomics",
-	"content": "A visual system for the exploration of cardiac transcriptome data"
+	"github/Rohit-Kundu/ET-NET_Covid-Detection": {
+	"id": "github/Rohit-Kundu/ET-NET_Covid-Detection",
+	"title": "github/Rohit-Kundu/ET-NET_Covid-Detection",
+	"url": " https://rseng.github.io/software/repository/github/Rohit-Kundu/ET-NET_Covid-Detection",
+	"content": "An Ensemble Transfer Learning Network for COVID-19 detection from lung CT-scan images."
 	},
-	"github/DLTK/DLTK": {
-	"id": "github/DLTK/DLTK",
-	"title": "github/DLTK/DLTK",
-	"url": " https://rseng.github.io/software/repository/github/DLTK/DLTK",
-	"content": "Deep Learning Toolkit for Medical Image Analysis"
+	"github/rezeebe/orbitN": {
+	"id": "github/rezeebe/orbitN",
+	"title": "github/rezeebe/orbitN",
+	"url": " https://rseng.github.io/software/repository/github/rezeebe/orbitN",
+	"content": "Symplectic integrator for near-Keplerian planetary systems"
 	},
-	"github/drupke/ifsred": {
-	"id": "github/drupke/ifsred",
-	"title": "github/drupke/ifsred",
-	"url": " https://rseng.github.io/software/repository/github/drupke/ifsred",
-	"content": "Astronomy software tools for reducing data from an integral field spectrograph (IFS)."
+	"github/Muhammad-Arif-NUST/BVP_Pred_Unb": {
+	"id": "github/Muhammad-Arif-NUST/BVP_Pred_Unb",
+	"title": "github/Muhammad-Arif-NUST/BVP_Pred_Unb",
+	"url": " https://rseng.github.io/software/repository/github/Muhammad-Arif-NUST/BVP_Pred_Unb",
+	"content": "None"
 	},
-	"github/drupke/ifsfit": {
-	"id": "github/drupke/ifsfit",
-	"title": "github/drupke/ifsfit",
-	"url": " https://rseng.github.io/software/repository/github/drupke/ifsfit",
-	"content": "Astronomy spectral fitting software optimized for integral field spectroscopy (IFS)."
+	"github/FlowModelingControl/flowtorch": {
+	"id": "github/FlowModelingControl/flowtorch",
+	"title": "github/FlowModelingControl/flowtorch",
+	"url": " https://rseng.github.io/software/repository/github/FlowModelingControl/flowtorch",
+	"content": "flowTorch - a Python library for analysis and reduced-order modeling of fluid flows"
 	},
-	"github/drupke/questfit": {
-	"id": "github/drupke/questfit",
-	"title": "github/drupke/questfit",
-	"url": " https://rseng.github.io/software/repository/github/drupke/questfit",
-	"content": "fitter for mid-infrared galaxy spectra"
+	"github/lnferris/ocean_data_tools": {
+	"id": "github/lnferris/ocean_data_tools",
+	"title": "github/lnferris/ocean_data_tools",
+	"url": " https://rseng.github.io/software/repository/github/lnferris/ocean_data_tools",
+	"content": "A MATLAB toolbox for interacting with bulk freely-available oceanographic data."
 	},
-	"github/Johannes-Sahlmann/pygacs": {
-	"id": "github/Johannes-Sahlmann/pygacs",
-	"title": "github/Johannes-Sahlmann/pygacs",
-	"url": " https://rseng.github.io/software/repository/github/Johannes-Sahlmann/pygacs",
-	"content": "Toolkit to manipulate Gaia catalogue tables hosted at ESAC archive."
+	"github/bmoster/emerge": {
+	"id": "github/bmoster/emerge",
+	"title": "github/bmoster/emerge",
+	"url": " https://rseng.github.io/software/repository/github/bmoster/emerge",
+	"content": "Emerge - the smooth empirical model for galaxy formation"
 	},
-	"github/ImperialCollegeLondon/rcs_cluster_scripts": {
-	"id": "github/ImperialCollegeLondon/rcs_cluster_scripts",
-	"title": "github/ImperialCollegeLondon/rcs_cluster_scripts",
-	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/rcs_cluster_scripts",
-	"content": "A collection of handy scripts for use with the Imperial College Research Computing Service cluster"
+	"github/martinlackner/abcvoting": {
+	"id": "github/martinlackner/abcvoting",
+	"title": "github/martinlackner/abcvoting",
+	"url": " https://rseng.github.io/software/repository/github/martinlackner/abcvoting",
+	"content": "Python implementations of approval-based committee (multi-winner) voting rules"
 	},
-	"github/ImperialCollegeLondon/fractalgenetics": {
-	"id": "github/ImperialCollegeLondon/fractalgenetics",
-	"title": "github/ImperialCollegeLondon/fractalgenetics",
-	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/fractalgenetics",
-	"content": "Analysis of the genomic architecture and functional role of myocardial trabeculae"
+	"github/mtakahiro/gsf": {
+	"id": "github/mtakahiro/gsf",
+	"title": "github/mtakahiro/gsf",
+	"url": " https://rseng.github.io/software/repository/github/mtakahiro/gsf",
+	"content": "Grism SED Fitting package"
 	},
-	"github/ImperialCollegeLondon/pytest_template_application": {
-	"id": "github/ImperialCollegeLondon/pytest_template_application",
-	"title": "github/ImperialCollegeLondon/pytest_template_application",
-	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/pytest_template_application",
-	"content": "Python application template with automated QA and Docker image publishing"
+	"github/portsmouth/cmbview": {
+	"id": "github/portsmouth/cmbview",
+	"title": "github/portsmouth/cmbview",
+	"url": " https://rseng.github.io/software/repository/github/portsmouth/cmbview",
+	"content": "Automatically exported from code.google.com/p/cmbview"
 	},
-	"github/ImperialCollegeLondon/EpiCollectplus": {
-	"id": "github/ImperialCollegeLondon/EpiCollectplus",
-	"title": "github/ImperialCollegeLondon/EpiCollectplus",
-	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/EpiCollectplus",
-	"content": "The next generation of EpiCollect, multiple forms, more fields and more control. We recommend using Apache 2.2 or later, PHP 5.3 or later and MySQL 5.5 or later."
+	"github/gtayana/CVRMS": {
+	"id": "github/gtayana/CVRMS",
+	"title": "github/gtayana/CVRMS",
+	"url": " https://rseng.github.io/software/repository/github/gtayana/CVRMS",
+	"content": "Marker selection for genome-wide prediction"
 	},
-	"github/ImperialCollegeLondon/hcga": {
-	"id": "github/ImperialCollegeLondon/hcga",
-	"title": "github/ImperialCollegeLondon/hcga",
-	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/hcga",
-	"content": "Highly Comparative Graph Analysis - Code for network phenotyping "
+	"github/SWE-UniStuttgart/Qlunc": {
+	"id": "github/SWE-UniStuttgart/Qlunc",
+	"title": "github/SWE-UniStuttgart/Qlunc",
+	"url": " https://rseng.github.io/software/repository/github/SWE-UniStuttgart/Qlunc",
+	"content": "A numerical framework to estimate hardware and data processing uncertainties of a lidar device"
 	},
-	"github/ImperialCollegeLondon/sharpy": {
-	"id": "github/ImperialCollegeLondon/sharpy",
-	"title": "github/ImperialCollegeLondon/sharpy",
-	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/sharpy",
-	"content": "Simulation of High Aspect Ratio aeroplanes and wind turbines in Python: a nonlinear aeroelastic code"
+	"github/cheginit/HyRiver": {
+	"id": "github/cheginit/HyRiver",
+	"title": "github/cheginit/HyRiver",
+	"url": " https://rseng.github.io/software/repository/github/cheginit/HyRiver",
+	"content": "A Python software stack for retrieving hydroclimate data from web services."
 	},
-	"github/ImperialCollegeLondon/epidemia": {
-	"id": "github/ImperialCollegeLondon/epidemia",
-	"title": "github/ImperialCollegeLondon/epidemia",
-	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/epidemia",
-	"content": "epidemia package"
+	"github/eead-csic-compbio/get_homologues": {
+	"id": "github/eead-csic-compbio/get_homologues",
+	"title": "github/eead-csic-compbio/get_homologues",
+	"url": " https://rseng.github.io/software/repository/github/eead-csic-compbio/get_homologues",
+	"content": "GET_HOMOLOGUES: a versatile software package for pan-genome analysis"
 	},
-	"github/ImperialCollegeLondon/django-drf-filepond": {
-	"id": "github/ImperialCollegeLondon/django-drf-filepond",
-	"title": "github/ImperialCollegeLondon/django-drf-filepond",
-	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/django-drf-filepond",
-	"content": "A Django app providing a server implemention for the Filepond file upload library"
+	"github/herjy/SLIT": {
+	"id": "github/herjy/SLIT",
+	"title": "github/herjy/SLIT",
+	"url": " https://rseng.github.io/software/repository/github/herjy/SLIT",
+	"content": "SLIT is a python code that provides a method for invertion of lensed images in the frame of strong gravitational lensing"
 	},
-	"github/ImperialCollegeLondon/R2T2": {
-	"id": "github/ImperialCollegeLondon/R2T2",
-	"title": "github/ImperialCollegeLondon/R2T2",
-	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/R2T2",
-	"content": "Research References Tracking Tool"
+	"github/drzeeshanahmed/JWES-Visual": {
+	"id": "github/drzeeshanahmed/JWES-Visual",
+	"title": "github/drzeeshanahmed/JWES-Visual",
+	"url": " https://rseng.github.io/software/repository/github/drzeeshanahmed/JWES-Visual",
+	"content": "None"
 	},
-	"github/ImperialCollegeLondon/covid19model": {
-	"id": "github/ImperialCollegeLondon/covid19model",
-	"title": "github/ImperialCollegeLondon/covid19model",
-	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/covid19model",
-	"content": "Code for modelling estimated deaths and cases for COVID19. "
+	"github/sjforeman/StringFast": {
+	"id": "github/sjforeman/StringFast",
+	"title": "github/sjforeman/StringFast",
+	"url": " https://rseng.github.io/software/repository/github/sjforeman/StringFast",
+	"content": "A fast code to compute CMB power spectra induced by a network of cosmic strings"
 	},
-	"github/ImperialCollegeLondon/WInc3D": {
-	"id": "github/ImperialCollegeLondon/WInc3D",
-	"title": "github/ImperialCollegeLondon/WInc3D",
-	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/WInc3D",
-	"content": "Wind Farm Simulator"
+	"github/sjforeman/bskit": {
+	"id": "github/sjforeman/bskit",
+	"title": "github/sjforeman/bskit",
+	"url": " https://rseng.github.io/software/repository/github/sjforeman/bskit",
+	"content": "Code for measuring bispectra from cosmological simulation snapshots"
 	},
-	"github/ImperialCollegeLondon/UVLM": {
-	"id": "github/ImperialCollegeLondon/UVLM",
-	"title": "github/ImperialCollegeLondon/UVLM",
-	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/UVLM",
-	"content": "Unsteady Vortex Lattice Method for Aeroelasticity in C++"
+	"github/reznik-lab/MIRTH": {
+	"id": "github/reznik-lab/MIRTH",
+	"title": "github/reznik-lab/MIRTH",
+	"url": " https://rseng.github.io/software/repository/github/reznik-lab/MIRTH",
+	"content": "Metabolite Imputation via Rank Transformation and Harmonization"
 	},
-	"github/ImperialCollegeLondon/safedata": {
-	"id": "github/ImperialCollegeLondon/safedata",
-	"title": "github/ImperialCollegeLondon/safedata",
-	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/safedata",
-	"content": "An R package for discovering and using data from the SAFE Project"
+	"github/n-claes/legolas": {
+	"id": "github/n-claes/legolas",
+	"title": "github/n-claes/legolas",
+	"url": " https://rseng.github.io/software/repository/github/n-claes/legolas",
+	"content": "Legolas: a modern tool for MHD spectroscopy"
 	},
-	"github/ImperialCollegeLondon/sap-voicebox": {
-	"id": "github/ImperialCollegeLondon/sap-voicebox",
-	"title": "github/ImperialCollegeLondon/sap-voicebox",
-	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/sap-voicebox",
-	"content": "Speech Processing Toolbox for MATLAB"
+	"github/kusmic/pycosie": {
+	"id": "github/kusmic/pycosie",
+	"title": "github/kusmic/pycosie",
+	"url": " https://rseng.github.io/software/repository/github/kusmic/pycosie",
+	"content": "pycosie (pie cozy) is a complimentary suite of analyses software written in Python meant to be analyzed on Technicolor Dawn and quasarcosie outputs. It is the Pyhton derivative of ARCOSIE."
 	},
-	"github/ImperialCollegeLondon/research-software-directory-data": {
-	"id": "github/ImperialCollegeLondon/research-software-directory-data",
-	"title": "github/ImperialCollegeLondon/research-software-directory-data",
-	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/research-software-directory-data",
-	"content": "Imperial College Research Software Directory"
+	"github/AusSRC/SoFiAX": {
+	"id": "github/AusSRC/SoFiAX",
+	"title": "github/AusSRC/SoFiAX",
+	"url": " https://rseng.github.io/software/repository/github/AusSRC/SoFiAX",
+	"content": "Source finding application executor"
 	},
-	"github/ImperialCollegeLondon/adam": {
-	"id": "github/ImperialCollegeLondon/adam",
-	"title": "github/ImperialCollegeLondon/adam",
-	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/adam",
+	"github/abaleato/CARDiAC": {
+	"id": "github/abaleato/CARDiAC",
+	"title": "github/abaleato/CARDiAC",
+	"url": " https://rseng.github.io/software/repository/github/abaleato/CARDiAC",
+	"content": "Code for Anisotropic Redshift Distributions in Angular Clustering"
+	},
+	"github/UM-KevinHe/surtvep": {
+	"id": "github/UM-KevinHe/surtvep",
+	"title": "github/UM-KevinHe/surtvep",
+	"url": " https://rseng.github.io/software/repository/github/UM-KevinHe/surtvep",
 	"content": "None"
 	},
-	"github/ImperialCollegeLondon/magda_tools": {
-	"id": "github/ImperialCollegeLondon/magda_tools",
-	"title": "github/ImperialCollegeLondon/magda_tools",
-	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/magda_tools",
-	"content": "A collection of tools for working with MAGDA data files"
+	"github/sstadick/perbase": {
+	"id": "github/sstadick/perbase",
+	"title": "github/sstadick/perbase",
+	"url": " https://rseng.github.io/software/repository/github/sstadick/perbase",
+	"content": "Per-base per-nucleotide depth analysis"
 	},
-	"github/ImperialCollegeLondon/rcs-pacemakers": {
-	"id": "github/ImperialCollegeLondon/rcs-pacemakers",
-	"title": "github/ImperialCollegeLondon/rcs-pacemakers",
-	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/rcs-pacemakers",
-	"content": "Example of GPU-accelerated machine learning on the RCS compute cluster using Jupyter and conda"
+	"github/saphir746/BiobankRead-Bash": {
+	"id": "github/saphir746/BiobankRead-Bash",
+	"title": "github/saphir746/BiobankRead-Bash",
+	"url": " https://rseng.github.io/software/repository/github/saphir746/BiobankRead-Bash",
+	"content": "Python scripts to extract and pre-process UKB data"
 	},
-	"github/ImperialCollegeLondon/champ": {
-	"id": "github/ImperialCollegeLondon/champ",
-	"title": "github/ImperialCollegeLondon/champ",
-	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/champ",
-	"content": "None"
+	"github/kreshuklab/plant-seg": {
+	"id": "github/kreshuklab/plant-seg",
+	"title": "github/kreshuklab/plant-seg",
+	"url": " https://rseng.github.io/software/repository/github/kreshuklab/plant-seg",
+	"content": " A tool for cell instance aware segmentation in densely packed 3D volumetric images "
 	},
-	"github/ImperialCollegeLondon/ICLOCS": {
-	"id": "github/ImperialCollegeLondon/ICLOCS",
-	"title": "github/ImperialCollegeLondon/ICLOCS",
-	"url": " https://rseng.github.io/software/repository/github/ImperialCollegeLondon/ICLOCS",
-	"content": "Imperial College London Optimal Control Software (ICLOCS)"
+	"github/Jane110111107/IsoTree": {
+	"id": "github/Jane110111107/IsoTree",
+	"title": "github/Jane110111107/IsoTree",
+	"url": " https://rseng.github.io/software/repository/github/Jane110111107/IsoTree",
+	"content": "an efficient de novo trascriptome assembler for RNA-Seq data. It can assemble transcripts from RNA-Seq reads (in fasta format). Unlike most of de novo assembly methods that build de Bruijn graph or splicing graph by connecting k-mers which are sets of overlapping substrings generated from reads, IsoTree constructs splicing graph by connecting reads directly. For each splicing graph, IsoTree applies an iterative scheme of …"
 	},
-	"github/liniguez/Insplico_simulations": {
-	"id": "github/liniguez/Insplico_simulations",
-	"title": "github/liniguez/Insplico_simulations",
-	"url": " https://rseng.github.io/software/repository/github/liniguez/Insplico_simulations",
-	"content": "None"
+	"github/dazhwu/pydynpd": {
+	"id": "github/dazhwu/pydynpd",
+	"title": "github/dazhwu/pydynpd",
+	"url": " https://rseng.github.io/software/repository/github/dazhwu/pydynpd",
+	"content": "This python package estimates dynamic panel data model using difference GMM and system GMM."
 	},
-	"github/equipeGST/RiboDoc": {
-	"id": "github/equipeGST/RiboDoc",
-	"title": "github/equipeGST/RiboDoc",
-	"url": " https://rseng.github.io/software/repository/github/equipeGST/RiboDoc",
-	"content": "Docker based tool for ribosome profiling (RiboSeq) analysis"
+	"github/aadya940/chainopy": {
+	"id": "github/aadya940/chainopy",
+	"title": "github/aadya940/chainopy",
+	"url": " https://rseng.github.io/software/repository/github/aadya940/chainopy",
+	"content": "ChainoPy: A Python Library for Discrete Time Markov Chain based stochastic analysis"
 	},
-	"github/viromelab/tracespipe": {
-	"id": "github/viromelab/tracespipe",
-	"title": "github/viromelab/tracespipe",
-	"url": " https://rseng.github.io/software/repository/github/viromelab/tracespipe",
-	"content": "Reconstruction and analysis of viral and host genomes at multi-organ level"
+	"github/VeinsOfTheEarth/rabpro": {
+	"id": "github/VeinsOfTheEarth/rabpro",
+	"title": "github/VeinsOfTheEarth/rabpro",
+	"url": " https://rseng.github.io/software/repository/github/VeinsOfTheEarth/rabpro",
+	"content": "River and basin profiler"
 	},
-	"github/spglib/spgrep": {
-	"id": "github/spglib/spgrep",
-	"title": "github/spglib/spgrep",
-	"url": " https://rseng.github.io/software/repository/github/spglib/spgrep",
-	"content": "On-the-fly generator of space-group irreducible representations"
+	"github/mlaparie/sigh": {
+	"id": "github/mlaparie/sigh",
+	"title": "github/mlaparie/sigh",
+	"url": " https://rseng.github.io/software/repository/github/mlaparie/sigh",
+	"content": "sigh, a program to cure optimism and automatically scrape worldwide data about reported disaster and perturbation events."
 	},
-	"github/ecological-cities/home2park": {
-	"id": "github/ecological-cities/home2park",
-	"title": "github/ecological-cities/home2park",
-	"url": " https://rseng.github.io/software/repository/github/ecological-cities/home2park",
-	"content": "home2park: Assess the spatial provision of urban parks"
+	"github/mlaparie/phidget-tools": {
+	"id": "github/mlaparie/phidget-tools",
+	"title": "github/mlaparie/phidget-tools",
+	"url": " https://rseng.github.io/software/repository/github/mlaparie/phidget-tools",
+	"content": "Terminal tools to record/monitor from Phidget 1048_1B USB-thermocouple devices"
 	},
-	"github/floodlight-sports/floodlight": {
-	"id": "github/floodlight-sports/floodlight",
-	"title": "github/floodlight-sports/floodlight",
-	"url": " https://rseng.github.io/software/repository/github/floodlight-sports/floodlight",
-	"content": "Python package for streamlined analysis of sports data."
+	"github/WhaleConnect/whaleconnect": {
+	"id": "github/WhaleConnect/whaleconnect",
+	"title": "github/WhaleConnect/whaleconnect",
+	"url": " https://rseng.github.io/software/repository/github/WhaleConnect/whaleconnect",
+	"content": "Cross-platform network communication software"
 	},
-	"github/qMRLab/qMRLab": {
-	"id": "github/qMRLab/qMRLab",
-	"title": "github/qMRLab/qMRLab",
-	"url": " https://rseng.github.io/software/repository/github/qMRLab/qMRLab",
-	"content": "Quantitative Magnetic Resonance Imaging Made Easy with qMRLab: a Software for Data Simulation, Analysis and Visualization"
+	"github/mommermi/photometrypipeline": {
+	"id": "github/mommermi/photometrypipeline",
+	"title": "github/mommermi/photometrypipeline",
+	"url": " https://rseng.github.io/software/repository/github/mommermi/photometrypipeline",
+	"content": "automated photometry pipeline for small to medium-sized observatories"
 	},
-	"github/RTIInternational/gobbli": {
-	"id": "github/RTIInternational/gobbli",
-	"title": "github/RTIInternational/gobbli",
-	"url": " https://rseng.github.io/software/repository/github/RTIInternational/gobbli",
-	"content": "Deep learning with text doesn&#39;t have to be scary."
+	"github/swiftsim/swiftsimio": {
+	"id": "github/swiftsim/swiftsimio",
+	"title": "github/swiftsim/swiftsimio",
+	"url": " https://rseng.github.io/software/repository/github/swiftsim/swiftsimio",
+	"content": "Python library for reading SWIFT data. Uses unyt and h5py."
 	},
-	"github/Astro-Sean/escatter": {
-	"id": "github/Astro-Sean/escatter",
-	"title": "github/Astro-Sean/escatter",
-	"url": " https://rseng.github.io/software/repository/github/Astro-Sean/escatter",
-	"content": "Python script to perform Monte Carlo simulations of electron scattering events in interacting supernovae."
+	"github/dsavransky/EXOSIMS": {
+	"id": "github/dsavransky/EXOSIMS",
+	"title": "github/dsavransky/EXOSIMS",
+	"url": " https://rseng.github.io/software/repository/github/dsavransky/EXOSIMS",
+	"content": "Simulator for exoplanet direct imaging space missions"
 	},
-	"github/Astro-Sean/autophot": {
-	"id": "github/Astro-Sean/autophot",
-	"title": "github/Astro-Sean/autophot",
-	"url": " https://rseng.github.io/software/repository/github/Astro-Sean/autophot",
-	"content": "The AUTOmated Photometry Of Transients (AutoPhOT) is a novel automated pipeline that is designed for rapid, publication-quality photometry of transients."
+	"github/SJTU-CGM/ivTerm": {
+	"id": "github/SJTU-CGM/ivTerm",
+	"title": "github/SJTU-CGM/ivTerm",
+	"url": " https://rseng.github.io/software/repository/github/SJTU-CGM/ivTerm",
+	"content": "None"
 	},
-	"github/GaryBAYLOR/mixR": {
-	"id": "github/GaryBAYLOR/mixR",
-	"title": "github/GaryBAYLOR/mixR",
-	"url": " https://rseng.github.io/software/repository/github/GaryBAYLOR/mixR",
-	"content": "R package for fitting finite mixture models for both raw and binned data"
+	"github/QEF/q-e": {
+	"id": "github/QEF/q-e",
+	"title": "github/QEF/q-e",
+	"url": " https://rseng.github.io/software/repository/github/QEF/q-e",
+	"content": "Mirror of the Quantum ESPRESSO repository. Please do not post Issues or pull requests here. Use gitlab.com/QEF/q-e instead."
 	},
-	"github/vprusso/toqito": {
-	"id": "github/vprusso/toqito",
-	"title": "github/vprusso/toqito",
-	"url": " https://rseng.github.io/software/repository/github/vprusso/toqito",
-	"content": "|toqito&gt; (Theory of Quantum Information Toolkit) in Python :snake:"
+	"github/BonsonW/slow5curl": {
+	"id": "github/BonsonW/slow5curl",
+	"title": "github/BonsonW/slow5curl",
+	"url": " https://rseng.github.io/software/repository/github/BonsonW/slow5curl",
+	"content": "A library and tool for accessing remote BLOW5 files."
 	},
-	"github/ci-for-research/self-hosted-runners": {
-	"id": "github/ci-for-research/self-hosted-runners",
-	"title": "github/ci-for-research/self-hosted-runners",
-	"url": " https://rseng.github.io/software/repository/github/ci-for-research/self-hosted-runners",
-	"content": "Recipe to install and configure a GitHub action runner using Ansible"
+	"github/taoliu/MACS": {
+	"id": "github/taoliu/MACS",
+	"title": "github/taoliu/MACS",
+	"url": " https://rseng.github.io/software/repository/github/taoliu/MACS",
+	"content": "MACS -- Model-based Analysis of ChIP-Seq"
 	},
-	"github/JPenuchot/ctbench": {
-	"id": "github/JPenuchot/ctbench",
-	"title": "github/JPenuchot/ctbench",
-	"url": " https://rseng.github.io/software/repository/github/JPenuchot/ctbench",
-	"content": "Compiler-assisted variable size benchmarking for the study of C++ metaprogram compile times."
+	"github/simon-smart88/shinyscholar": {
+	"id": "github/simon-smart88/shinyscholar",
+	"title": "github/simon-smart88/shinyscholar",
+	"url": " https://rseng.github.io/software/repository/github/simon-smart88/shinyscholar",
+	"content": "A template for creating modular shiny applications that meet academic standards and are reproducible"
 	},
-	"github/thorstone25/qups": {
-	"id": "github/thorstone25/qups",
-	"title": "github/thorstone25/qups",
-	"url": " https://rseng.github.io/software/repository/github/thorstone25/qups",
-	"content": "A MATLAB toolbox for prototyping and simulating diagnostic ultrasound imaging systems"
+	"github/yqiuu/spectuner": {
+	"id": "github/yqiuu/spectuner",
+	"title": "github/yqiuu/spectuner",
+	"url": " https://rseng.github.io/software/repository/github/yqiuu/spectuner",
+	"content": "A tool for automated line identification of interstellar molecules."
 	},
-	"github/OrlandoLam/SAMT": {
-	"id": "github/OrlandoLam/SAMT",
-	"title": "github/OrlandoLam/SAMT",
-	"url": " https://rseng.github.io/software/repository/github/OrlandoLam/SAMT",
-	"content": "South Australian Macrobenthic Traits database "
+	"github/yqiuu/starduster": {
+	"id": "github/yqiuu/starduster",
+	"title": "github/yqiuu/starduster",
+	"url": " https://rseng.github.io/software/repository/github/yqiuu/starduster",
+	"content": "A multi-wavelength SED model based on radiative transfer and deep learning."
 	},
-	"github/easybuilders/easybuild": {
-	"id": "github/easybuilders/easybuild",
-	"title": "github/easybuilders/easybuild",
-	"url": " https://rseng.github.io/software/repository/github/easybuilders/easybuild",
-	"content": "EasyBuild - building software with ease"
+	"github/awsteiner/o2scl": {
+	"id": "github/awsteiner/o2scl",
+	"title": "github/awsteiner/o2scl",
+	"url": " https://rseng.github.io/software/repository/github/awsteiner/o2scl",
+	"content": "Object-oriented Scientific Computing Library"
 	},
-	"github/jeremysanders/xspec_emcee": {
-	"id": "github/jeremysanders/xspec_emcee",
-	"title": "github/jeremysanders/xspec_emcee",
-	"url": " https://rseng.github.io/software/repository/github/jeremysanders/xspec_emcee",
-	"content": "Use EMCEE to do MCMC analyses of spectra in XSPEC"
+	"github/awsteiner/bamr": {
+	"id": "github/awsteiner/bamr",
+	"title": "github/awsteiner/bamr",
+	"url": " https://rseng.github.io/software/repository/github/awsteiner/bamr",
+	"content": "Bayesian Analysis of neutron star Mass and Radius observations"
 	},
-	"github/jeremysanders/mbproj2": {
-	"id": "github/jeremysanders/mbproj2",
-	"title": "github/jeremysanders/mbproj2",
-	"url": " https://rseng.github.io/software/repository/github/jeremysanders/mbproj2",
-	"content": "Multi-Band x-ray surface brightness PROJector 2"
+	"github/LindaNab/mecor": {
+	"id": "github/LindaNab/mecor",
+	"title": "github/LindaNab/mecor",
+	"url": " https://rseng.github.io/software/repository/github/LindaNab/mecor",
+	"content": "measurement error correction"
 	},
-	"github/jeremysanders/spex_to_xspec": {
-	"id": "github/jeremysanders/spex_to_xspec",
-	"title": "github/jeremysanders/spex_to_xspec",
-	"url": " https://rseng.github.io/software/repository/github/jeremysanders/spex_to_xspec",
-	"content": "Tool to dump SPEX spectral models into APEC-format tables"
+	"github/exoclam/gaspery": {
+	"id": "github/exoclam/gaspery",
+	"title": "github/exoclam/gaspery",
+	"url": " https://rseng.github.io/software/repository/github/exoclam/gaspery",
+	"content": "None"
 	},
-	"github/jeremysanders/ggm": {
-	"id": "github/jeremysanders/ggm",
-	"title": "github/jeremysanders/ggm",
-	"url": " https://rseng.github.io/software/repository/github/jeremysanders/ggm",
-	"content": "Gaussian gradient magnitude filtering of astronomical images"
+	"github/lanzen/ampliconnoise": {
+	"id": "github/lanzen/ampliconnoise",
+	"title": "github/lanzen/ampliconnoise",
+	"url": " https://rseng.github.io/software/repository/github/lanzen/ampliconnoise",
+	"content": "Automatically exported from code.google.com/p/ampliconnoise"
 	},
-	"github/jeremysanders/contbin": {
-	"id": "github/jeremysanders/contbin",
-	"title": "github/jeremysanders/contbin",
-	"url": " https://rseng.github.io/software/repository/github/jeremysanders/contbin",
-	"content": "Contour binning code"
+	"github/dokester/BayesicFitting": {
+	"id": "github/dokester/BayesicFitting",
+	"title": "github/dokester/BayesicFitting",
+	"url": " https://rseng.github.io/software/repository/github/dokester/BayesicFitting",
+	"content": "Bayesian fitting package"
 	},
-	"github/jeremysanders/dsdeproj": {
-	"id": "github/jeremysanders/dsdeproj",
-	"title": "github/jeremysanders/dsdeproj",
-	"url": " https://rseng.github.io/software/repository/github/jeremysanders/dsdeproj",
-	"content": "Direct Spectral Deprojection code"
+	"github/amkrajewski/nimCSO": {
+	"id": "github/amkrajewski/nimCSO",
+	"title": "github/amkrajewski/nimCSO",
+	"url": " https://rseng.github.io/software/repository/github/amkrajewski/nimCSO",
+	"content": "nim Composition Space Optimization is a high-performance tool leveraging metaprogramming to implement several methods for selecting components (data dimensions) in compositional datasets, as to optimize the data availability and density for applications such as machine learning."
 	},
-	"github/riatelab/osrm": {
-	"id": "github/riatelab/osrm",
-	"title": "github/riatelab/osrm",
-	"url": " https://rseng.github.io/software/repository/github/riatelab/osrm",
-	"content": "Shortest Paths and Travel Time from OpenStreetMap with R"
+	"github/spjuhel/BoARIO": {
+	"id": "github/spjuhel/BoARIO",
+	"title": "github/spjuhel/BoARIO",
+	"url": " https://rseng.github.io/software/repository/github/spjuhel/BoARIO",
+	"content": "Python implementation of ARIO model"
 	},
-	"github/egpbos/barcode": {
-	"id": "github/egpbos/barcode",
-	"title": "github/egpbos/barcode",
-	"url": " https://rseng.github.io/software/repository/github/egpbos/barcode",
-	"content": "Bayesian reconstruction of cosmic density fields"
+	"github/markheckmann/OpenRepGrid.ic": {
+	"id": "github/markheckmann/OpenRepGrid.ic",
+	"title": "github/markheckmann/OpenRepGrid.ic",
+	"url": " https://rseng.github.io/software/repository/github/markheckmann/OpenRepGrid.ic",
+	"content": "shiny app for interpretive clustering of repgrids:"
 	},
-	"github/rhyspoulton/OrbWeaver": {
-	"id": "github/rhyspoulton/OrbWeaver",
-	"title": "github/rhyspoulton/OrbWeaver",
-	"url": " https://rseng.github.io/software/repository/github/rhyspoulton/OrbWeaver",
-	"content": "Galaxy/(sub)halo orbital processing tool"
+	"github/molgenis/vibe-suppl": {
+	"id": "github/molgenis/vibe-suppl",
+	"title": "github/molgenis/vibe-suppl",
+	"url": " https://rseng.github.io/software/repository/github/molgenis/vibe-suppl",
+	"content": "Variant Interpretation using Biological Evidence - supplemental files"
 	},
-	"github/rhyspoulton/WhereWolf": {
-	"id": "github/rhyspoulton/WhereWolf",
-	"title": "github/rhyspoulton/WhereWolf",
-	"url": " https://rseng.github.io/software/repository/github/rhyspoulton/WhereWolf",
-	"content": "Galaxy/(sub)Halo ghosting tool for N-body simulations"
+	"github/molgenis/graph2vr": {
+	"id": "github/molgenis/graph2vr",
+	"title": "github/molgenis/graph2vr",
+	"url": " https://rseng.github.io/software/repository/github/molgenis/graph2vr",
+	"content": "Visualising / Exploring Linked Data (SPARQL Construct queries) in Virtual Reality."
 	},
-	"github/shadden/celmech": {
-	"id": "github/shadden/celmech",
-	"title": "github/shadden/celmech",
-	"url": " https://rseng.github.io/software/repository/github/shadden/celmech",
-	"content": "Sandbox for celestial mechanics calculations"
+	"github/lucianolorenti/ceruleo": {
+	"id": "github/lucianolorenti/ceruleo",
+	"title": "github/lucianolorenti/ceruleo",
+	"url": " https://rseng.github.io/software/repository/github/lucianolorenti/ceruleo",
+	"content": "CeRULEo: Comprehensive utilitiEs for Remaining Useful Life Estimation methOds"
 	},
-	"github/ParkvilleData/MetaGenePipe": {
-	"id": "github/ParkvilleData/MetaGenePipe",
-	"title": "github/ParkvilleData/MetaGenePipe",
-	"url": " https://rseng.github.io/software/repository/github/ParkvilleData/MetaGenePipe",
-	"content": "MGP"
+	"github/elnjensen/Tapir": {
+	"id": "github/elnjensen/Tapir",
+	"title": "github/elnjensen/Tapir",
+	"url": " https://rseng.github.io/software/repository/github/elnjensen/Tapir",
+	"content": "Tools for planning astronomical observations (transit visibility, airmass plots, finding charts)"
 	},
-	"github/jobovy/gaia_tools": {
-	"id": "github/jobovy/gaia_tools",
-	"title": "github/jobovy/gaia_tools",
-	"url": " https://rseng.github.io/software/repository/github/jobovy/gaia_tools",
-	"content": "Tools for working with the @ESAGaia data and related data sets"
+	"github/jGetMove/jGetMove": {
+	"id": "github/jGetMove/jGetMove",
+	"title": "github/jGetMove/jGetMove",
+	"url": " https://rseng.github.io/software/repository/github/jGetMove/jGetMove",
+	"content": "GetMove algorithm in java"
 	},
-	"github/jobovy/galpy": {
-	"id": "github/jobovy/galpy",
-	"title": "github/jobovy/galpy",
-	"url": " https://rseng.github.io/software/repository/github/jobovy/galpy",
-	"content": "Galactic Dynamics in python"
+	"github/tofflemire/saphires": {
+	"id": "github/tofflemire/saphires",
+	"title": "github/tofflemire/saphires",
+	"url": " https://rseng.github.io/software/repository/github/tofflemire/saphires",
+	"content": "Analysis tools for stellar spectroscopy"
 	},
-	"github/jobovy/apogee": {
-	"id": "github/jobovy/apogee",
-	"title": "github/jobovy/apogee",
-	"url": " https://rseng.github.io/software/repository/github/jobovy/apogee",
-	"content": "Tools for dealing with APOGEE data"
+	"github/liangcheng-hrbmu/EnrichDO": {
+	"id": "github/liangcheng-hrbmu/EnrichDO",
+	"title": "github/liangcheng-hrbmu/EnrichDO",
+	"url": " https://rseng.github.io/software/repository/github/liangcheng-hrbmu/EnrichDO",
+	"content": "a Bioinformatics Tool for Annotating and Enrichment Analysis with Disease Ontology"
 	},
-	"github/jobovy/segueSelect": {
-	"id": "github/jobovy/segueSelect",
-	"title": "github/jobovy/segueSelect",
-	"url": " https://rseng.github.io/software/repository/github/jobovy/segueSelect",
-	"content": "Selection function for the SDSS/SEGUE survey (G and K star samples)"
+	"github/EigenDev/simbi": {
+	"id": "github/EigenDev/simbi",
+	"title": "github/EigenDev/simbi",
+	"url": " https://rseng.github.io/software/repository/github/EigenDev/simbi",
+	"content": "SIMBI is a 3D Heterogeneous Relativistic Gas Dynamics Code using the Cython framework to blend together C++, CUDA, HIP, and Python."
 	},
-	"github/jobovy/simple-m2m": {
-	"id": "github/jobovy/simple-m2m",
-	"title": "github/jobovy/simple-m2m",
-	"url": " https://rseng.github.io/software/repository/github/jobovy/simple-m2m",
-	"content": "Simple M2M setup to explore some new ideas"
+	"github/rjtanner/StarburstPy": {
+	"id": "github/rjtanner/StarburstPy",
+	"title": "github/rjtanner/StarburstPy",
+	"url": " https://rseng.github.io/software/repository/github/rjtanner/StarburstPy",
+	"content": "Python Wrapper for Starburst99"
 	},
-	"github/jobovy/stream-stream": {
-	"id": "github/jobovy/stream-stream",
-	"title": "github/jobovy/stream-stream",
-	"url": " https://rseng.github.io/software/repository/github/jobovy/stream-stream",
-	"content": "Investigation of the interaction between stellar and dark-matter streams"
+	"github/JuliaQX/QXTools.jl": {
+	"id": "github/JuliaQX/QXTools.jl",
+	"title": "github/JuliaQX/QXTools.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaQX/QXTools.jl",
+	"content": "Julia package for quantum circuit simulation using tensor networks"
+	},
+	"github/rossjturner/RAiSERed": {
+	"id": "github/rossjturner/RAiSERed",
+	"title": "github/rossjturner/RAiSERed",
+	"url": " https://rseng.github.io/software/repository/github/rossjturner/RAiSERed",
+	"content": "None"
 	},
-	"github/jobovy/streamgap-pepper": {
-	"id": "github/jobovy/streamgap-pepper",
-	"title": "github/jobovy/streamgap-pepper",
-	"url": " https://rseng.github.io/software/repository/github/jobovy/streamgap-pepper",
-	"content": "Code exploring the effect of peppering of streams with many small impacts"
+	"github/SIOSlab/exodetbox": {
+	"id": "github/SIOSlab/exodetbox",
+	"title": "github/SIOSlab/exodetbox",
+	"url": " https://rseng.github.io/software/repository/github/SIOSlab/exodetbox",
+	"content": "Methods for finding planets sharing a common (s,dmag)"
 	},
-	"github/jobovy/extreme-deconvolution": {
-	"id": "github/jobovy/extreme-deconvolution",
-	"title": "github/jobovy/extreme-deconvolution",
-	"url": " https://rseng.github.io/software/repository/github/jobovy/extreme-deconvolution",
-	"content": "Density estimation using Gaussian mixtures in the presence of noisy, heterogeneous and incomplete data"
+	"github/jiujiezz/tsnad": {
+	"id": "github/jiujiezz/tsnad",
+	"title": "github/jiujiezz/tsnad",
+	"url": " https://rseng.github.io/software/repository/github/jiujiezz/tsnad",
+	"content": "Detecting somatic mutations and predicting tumor-specific neo-antigens"
 	},
-	"github/NLeSC/lokum": {
-	"id": "github/NLeSC/lokum",
-	"title": "github/NLeSC/lokum",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/lokum",
-	"content": "Deploy GlusterFS, Docker, Spark and JupyterHub services on bare-metal cluster."
+	"github/theonefromnowhere/FitCov": {
+	"id": "github/theonefromnowhere/FitCov",
+	"title": "github/theonefromnowhere/FitCov",
+	"url": " https://rseng.github.io/software/repository/github/theonefromnowhere/FitCov",
+	"content": "The code for the Fitted Covariance generation based on %paper link%"
 	},
-	"github/NLeSC/PattyAnalytics": {
-	"id": "github/NLeSC/PattyAnalytics",
-	"title": "github/NLeSC/PattyAnalytics",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/PattyAnalytics",
-	"content": "Reusable point cloud analytics software. Includes segmentation, registration, file format conversion. "
+	"github/davidechicco/geneExpressionFromGEO": {
+	"id": "github/davidechicco/geneExpressionFromGEO",
+	"title": "github/davidechicco/geneExpressionFromGEO",
+	"url": " https://rseng.github.io/software/repository/github/davidechicco/geneExpressionFromGEO",
+	"content": "geneExpressionFromGEO"
 	},
-	"github/NLeSC/pycoeman": {
-	"id": "github/NLeSC/pycoeman",
-	"title": "github/NLeSC/pycoeman",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/pycoeman",
-	"content": "Python Commands Execution Manager"
+	"github/cbg-ethz/shorah": {
+	"id": "github/cbg-ethz/shorah",
+	"title": "github/cbg-ethz/shorah",
+	"url": " https://rseng.github.io/software/repository/github/cbg-ethz/shorah",
+	"content": "Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)"
 	},
-	"github/NLeSC/ExtJS-DateTime": {
-	"id": "github/NLeSC/ExtJS-DateTime",
-	"title": "github/NLeSC/ExtJS-DateTime",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/ExtJS-DateTime",
-	"content": "DateTime input field for Ext JS"
+	"github/cbg-ethz/V-pipe": {
+	"id": "github/cbg-ethz/V-pipe",
+	"title": "github/cbg-ethz/V-pipe",
+	"url": " https://rseng.github.io/software/repository/github/cbg-ethz/V-pipe",
+	"content": "V-pipe is a pipeline designed for analysing NGS data of short viral genomes"
 	},
-	"github/NLeSC/fairdatapoint": {
-	"id": "github/NLeSC/fairdatapoint",
-	"title": "github/NLeSC/fairdatapoint",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/fairdatapoint",
-	"content": "Provide machine-readable descriptions of your data assets"
+	"github/cbg-ethz/LolliPop": {
+	"id": "github/cbg-ethz/LolliPop",
+	"title": "github/cbg-ethz/LolliPop",
+	"url": " https://rseng.github.io/software/repository/github/cbg-ethz/LolliPop",
+	"content": "Deconvolution for Wastewater Genomics"
 	},
-	"github/NLeSC/pattyvis": {
-	"id": "github/NLeSC/pattyvis",
-	"title": "github/NLeSC/pattyvis",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/pattyvis",
-	"content": "Webgl pointcloud visualization of the Via Appia based on potree"
+	"github/cbg-ethz/smallgenomeutilities": {
+	"id": "github/cbg-ethz/smallgenomeutilities",
+	"title": "github/cbg-ethz/smallgenomeutilities",
+	"url": " https://rseng.github.io/software/repository/github/cbg-ethz/smallgenomeutilities",
+	"content": "smallgenomeutilities is a collection of Python scripts to convert alignments between different reference genomes."
 	},
-	"github/NLeSC/esibayes": {
-	"id": "github/NLeSC/esibayes",
-	"title": "github/NLeSC/esibayes",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/esibayes",
-	"content": "Optimization and state estimation of dynamic models"
+	"github/cbg-ethz/PredictHaplo": {
+	"id": "github/cbg-ethz/PredictHaplo",
+	"title": "github/cbg-ethz/PredictHaplo",
+	"url": " https://rseng.github.io/software/repository/github/cbg-ethz/PredictHaplo",
+	"content": "This software aims at reconstructing haplotypes from next-generation sequencing data."
 	},
-	"github/NLeSC/eAstroViz": {
-	"id": "github/NLeSC/eAstroViz",
-	"title": "github/NLeSC/eAstroViz",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/eAstroViz",
-	"content": "None"
+	"github/jameschapman19/cca_zoo": {
+	"id": "github/jameschapman19/cca_zoo",
+	"title": "github/jameschapman19/cca_zoo",
+	"url": " https://rseng.github.io/software/repository/github/jameschapman19/cca_zoo",
+	"content": "Canonical Correlation Analysis Zoo: A collection of Regularized, Deep Learning based, Kernel, and Probabilistic methods in a scikit-learn style framework"
 	},
-	"github/NLeSC/Massive-PotreeConverter": {
-	"id": "github/NLeSC/Massive-PotreeConverter",
-	"title": "github/NLeSC/Massive-PotreeConverter",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/Massive-PotreeConverter",
-	"content": "Convert massive pointcloud, for example ahn2 (640 Billion points) to potree format."
+	"github/palaimon/ipyannotator": {
+	"id": "github/palaimon/ipyannotator",
+	"title": "github/palaimon/ipyannotator",
+	"url": " https://rseng.github.io/software/repository/github/palaimon/ipyannotator",
+	"content": "the infinitely hackable annotation framework"
 	},
-	"github/NLeSC/cptm": {
-	"id": "github/NLeSC/cptm",
-	"title": "github/NLeSC/cptm",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/cptm",
-	"content": "Cross-Perspective Topic Modeling"
+	"github/conda/pycosat": {
+	"id": "github/conda/pycosat",
+	"title": "github/conda/pycosat",
+	"url": " https://rseng.github.io/software/repository/github/conda/pycosat",
+	"content": "Python bindings to picosat (a SAT solver)"
 	},
-	"github/NLeSC/MAGMa": {
-	"id": "github/NLeSC/MAGMa",
-	"title": "github/NLeSC/MAGMa",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/MAGMa",
-	"content": "eMetabolomics project: Mass Annotation based on in silico Generated Metabolites"
+	"github/conda/conda-package-handling": {
+	"id": "github/conda/conda-package-handling",
+	"title": "github/conda/conda-package-handling",
+	"url": " https://rseng.github.io/software/repository/github/conda/conda-package-handling",
+	"content": "Create and extract conda packages of various formats"
 	},
-	"github/NLeSC/xtas": {
-	"id": "github/NLeSC/xtas",
-	"title": "github/NLeSC/xtas",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/xtas",
-	"content": "Distributed text analysis suite based on Celery"
+	"github/conda/conda": {
+	"id": "github/conda/conda",
+	"title": "github/conda/conda",
+	"url": " https://rseng.github.io/software/repository/github/conda/conda",
+	"content": "OS-agnostic, system-level binary package manager and ecosystem"
 	},
-	"github/NLeSC/hadrianus-scripts": {
-	"id": "github/NLeSC/hadrianus-scripts",
-	"title": "github/NLeSC/hadrianus-scripts",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/hadrianus-scripts",
-	"content": "Scripts used for the Hadrianus project"
+	"github/achael/eht-imaging": {
+	"id": "github/achael/eht-imaging",
+	"title": "github/achael/eht-imaging",
+	"url": " https://rseng.github.io/software/repository/github/achael/eht-imaging",
+	"content": "Imaging, analysis, and simulation software for radio interferometry"
 	},
-	"github/NLeSC/SalientDetector-python": {
-	"id": "github/NLeSC/SalientDetector-python",
-	"title": "github/NLeSC/SalientDetector-python",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/SalientDetector-python",
-	"content": "Python package for Large Scale Imaging research @ NLeSC"
+	"github/lemene/PECAT": {
+	"id": "github/lemene/PECAT",
+	"title": "github/lemene/PECAT",
+	"url": " https://rseng.github.io/software/repository/github/lemene/PECAT",
+	"content": "PECAT, a phased error correct and assembly tool"
 	},
-	"github/NLeSC/boatswain": {
-	"id": "github/NLeSC/boatswain",
-	"title": "github/NLeSC/boatswain",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/boatswain",
-	"content": "A simple build system for docker images"
+	"github/mpound/pdrtpy": {
+	"id": "github/mpound/pdrtpy",
+	"title": "github/mpound/pdrtpy",
+	"url": " https://rseng.github.io/software/repository/github/mpound/pdrtpy",
+	"content": "PhotoDissociation Region Toolbox Python module"
 	},
-	"github/NLeSC/SalientDetector-matlab": {
-	"id": "github/NLeSC/SalientDetector-matlab",
-	"title": "github/NLeSC/SalientDetector-matlab",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/SalientDetector-matlab",
-	"content": "MATLAB Software for Large Scale Imaging research @ NLeSc"
+	"github/mpound/comb": {
+	"id": "github/mpound/comb",
+	"title": "github/mpound/comb",
+	"url": " https://rseng.github.io/software/repository/github/mpound/comb",
+	"content": "The AT&amp;T Bell labs singledish radio astronomy data reduction package"
 	},
-	"github/NLeSC/OCTSegmentation": {
-	"id": "github/NLeSC/OCTSegmentation",
-	"title": "github/NLeSC/OCTSegmentation",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/OCTSegmentation",
-	"content": "EYR4-OCTSEG "
+	"github/Alymantara/pydoppler": {
+	"id": "github/Alymantara/pydoppler",
+	"title": "github/Alymantara/pydoppler",
+	"url": " https://rseng.github.io/software/repository/github/Alymantara/pydoppler",
+	"content": "A python wrapper for Henk Spruit&#39;s doppler tomography software"
 	},
-	"github/NLeSC/mcfly": {
-	"id": "github/NLeSC/mcfly",
-	"title": "github/NLeSC/mcfly",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/mcfly",
-	"content": "A deep learning tool for time series classification"
+	"github/PopMedNet-Team/popmednet": {
+	"id": "github/PopMedNet-Team/popmednet",
+	"title": "github/PopMedNet-Team/popmednet",
+	"url": " https://rseng.github.io/software/repository/github/PopMedNet-Team/popmednet",
+	"content": "This is the repository for the open source code of the distributed data network platform PopMedNet"
 	},
-	"github/NLeSC/eEcology-script-wrapper": {
-	"id": "github/NLeSC/eEcology-script-wrapper",
-	"title": "github/NLeSC/eEcology-script-wrapper",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/eEcology-script-wrapper",
-	"content": "Web application to make Matlab, R scripts available."
+	"github/dentalfloss1/transients-simulations": {
+	"id": "github/dentalfloss1/transients-simulations",
+	"title": "github/dentalfloss1/transients-simulations",
+	"url": " https://rseng.github.io/software/repository/github/dentalfloss1/transients-simulations",
+	"content": "None"
 	},
-	"github/NLeSC/baklava": {
-	"id": "github/NLeSC/baklava",
-	"title": "github/NLeSC/baklava",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/baklava",
-	"content": "Deploy a Kubernetes cluster and big data services on the cloud."
+	"github/bic-nirrh/precocity": {
+	"id": "github/bic-nirrh/precocity",
+	"title": "github/bic-nirrh/precocity",
+	"url": " https://rseng.github.io/software/repository/github/bic-nirrh/precocity",
+	"content": "Database and enrichment analysis of genes associated with precocious puberty"
 	},
-	"github/NLeSC/eEcology-SMS-reciever": {
-	"id": "github/NLeSC/eEcology-SMS-reciever",
-	"title": "github/NLeSC/eEcology-SMS-reciever",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/eEcology-SMS-reciever",
-	"content": "Webservice to store SMS messages into a database table"
+	"github/LucaJRossi/NIGO": {
+	"id": "github/LucaJRossi/NIGO",
+	"title": "github/LucaJRossi/NIGO",
+	"url": " https://rseng.github.io/software/repository/github/LucaJRossi/NIGO",
+	"content": "NIGO: a Numerical Integrator of Galactic Orbits"
 	},
-	"github/NLeSC/compressing-the-sky": {
-	"id": "github/NLeSC/compressing-the-sky",
-	"title": "github/NLeSC/compressing-the-sky",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/compressing-the-sky",
-	"content": "Compressing the Sky project with CWI DA"
+	"github/buschlab/fhirspark": {
+	"id": "github/buschlab/fhirspark",
+	"title": "github/buschlab/fhirspark",
+	"url": " https://rseng.github.io/software/repository/github/buschlab/fhirspark",
+	"content": "None"
 	},
-	"github/NLeSC/DiVE": {
-	"id": "github/NLeSC/DiVE",
-	"title": "github/NLeSC/DiVE",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/DiVE",
-	"content": "An interactive 3D web viewer of up to million points on one screen that represent data. Provides interaction for viewing high-dimensional data that has been previously embedded in 3D or 2D. Based on graphosaurus.js and three.js. For a Linux release of a complete embedding+visualization pipeline please visit https://github.com/sonjageorgievska/Embed-Dive."
+	"github/rvalieris/parallel-fastq-dump": {
+	"id": "github/rvalieris/parallel-fastq-dump",
+	"title": "github/rvalieris/parallel-fastq-dump",
+	"url": " https://rseng.github.io/software/repository/github/rvalieris/parallel-fastq-dump",
+	"content": "parallel fastq-dump wrapper"
 	},
-	"github/NLeSC/Chemical-Analytics-Platform": {
-	"id": "github/NLeSC/Chemical-Analytics-Platform",
-	"title": "github/NLeSC/Chemical-Analytics-Platform",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/Chemical-Analytics-Platform",
-	"content": "Scripts to create chemical analytics platform based on Knime"
+	"github/MJTemple/qsogen": {
+	"id": "github/MJTemple/qsogen",
+	"title": "github/MJTemple/qsogen",
+	"url": " https://rseng.github.io/software/repository/github/MJTemple/qsogen",
+	"content": "Model quasar SEDs"
 	},
-	"github/NLeSC/spot": {
-	"id": "github/NLeSC/spot",
-	"title": "github/NLeSC/spot",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/spot",
-	"content": "Try the demo"
+	"github/rasg-affiliates/healvis": {
+	"id": "github/rasg-affiliates/healvis",
+	"title": "github/rasg-affiliates/healvis",
+	"url": " https://rseng.github.io/software/repository/github/rasg-affiliates/healvis",
+	"content": "Visibility simulation off of HEALPix shells."
 	},
-	"github/NLeSC/SalientDescriptor-matlab": {
-	"id": "github/NLeSC/SalientDescriptor-matlab",
-	"title": "github/NLeSC/SalientDescriptor-matlab",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/SalientDescriptor-matlab",
-	"content": "None"
+	"github/rasg-affiliates/21cmSense": {
+	"id": "github/rasg-affiliates/21cmSense",
+	"title": "github/rasg-affiliates/21cmSense",
+	"url": " https://rseng.github.io/software/repository/github/rasg-affiliates/21cmSense",
+	"content": "Code for calculating the sensitivity of 21cm experiments to the EoR power spectrum"
 	},
-	"github/NLeSC/eEcology-Annotation-WS": {
-	"id": "github/NLeSC/eEcology-Annotation-WS",
-	"title": "github/NLeSC/eEcology-Annotation-WS",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/eEcology-Annotation-WS",
-	"content": "Webservice for eEcology Annotation project."
+	"github/Kaixhin/dockerfiles": {
+	"id": "github/Kaixhin/dockerfiles",
+	"title": "github/Kaixhin/dockerfiles",
+	"url": " https://rseng.github.io/software/repository/github/Kaixhin/dockerfiles",
+	"content": "Compilation of Dockerfiles with automated builds enabled on the Docker Registry"
 	},
-	"github/NLeSC/osmium": {
-	"id": "github/NLeSC/osmium",
-	"title": "github/NLeSC/osmium",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/osmium",
-	"content": "Xenon Job Webservice"
+	"github/Kaixhin/spinning-up-basic": {
+	"id": "github/Kaixhin/spinning-up-basic",
+	"title": "github/Kaixhin/spinning-up-basic",
+	"url": " https://rseng.github.io/software/repository/github/Kaixhin/spinning-up-basic",
+	"content": "Basic versions of agents from Spinning Up in Deep RL written in PyTorch"
 	},
-	"github/NLeSC/xenon-cli": {
-	"id": "github/NLeSC/xenon-cli",
-	"title": "github/NLeSC/xenon-cli",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/xenon-cli",
-	"content": "Perform files and jobs operations with Xenon library from command line"
+	"github/Kaixhin/Atari": {
+	"id": "github/Kaixhin/Atari",
+	"title": "github/Kaixhin/Atari",
+	"url": " https://rseng.github.io/software/repository/github/Kaixhin/Atari",
+	"content": "Persistent advantage learning dueling double DQN for the Arcade Learning Environment"
 	},
-	"github/NLeSC/ShiCo": {
-	"id": "github/NLeSC/ShiCo",
-	"title": "github/NLeSC/ShiCo",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/ShiCo",
-	"content": "Netherlands eScience Center - Shifting Concepts Through Time project"
+	"github/Kaixhin/FGMachine": {
+	"id": "github/Kaixhin/FGMachine",
+	"title": "github/Kaixhin/FGMachine",
+	"url": " https://rseng.github.io/software/repository/github/Kaixhin/FGMachine",
+	"content": "Future Gadget Machine"
 	},
-	"github/NLeSC/EEG-epilepsy-diagnosis": {
-	"id": "github/NLeSC/EEG-epilepsy-diagnosis",
-	"title": "github/NLeSC/EEG-epilepsy-diagnosis",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/EEG-epilepsy-diagnosis",
-	"content": "Detection of Epilepsy from EEG data (14 channel x 5 minutes)"
+	"github/Kaixhin/PlaNet": {
+	"id": "github/Kaixhin/PlaNet",
+	"title": "github/Kaixhin/PlaNet",
+	"url": " https://rseng.github.io/software/repository/github/Kaixhin/PlaNet",
+	"content": "Deep Planning Network: Control from pixels by latent planning with learned dynamics"
 	},
-	"github/NLeSC/noodles": {
-	"id": "github/NLeSC/noodles",
-	"title": "github/NLeSC/noodles",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/noodles",
-	"content": "Computational workflow engine, making distributed computing in Python easy!"
+	"github/Kaixhin/FGLab": {
+	"id": "github/Kaixhin/FGLab",
+	"title": "github/Kaixhin/FGLab",
+	"url": " https://rseng.github.io/software/repository/github/Kaixhin/FGLab",
+	"content": "Future Gadget Laboratory"
 	},
-	"github/NLeSC/PattyData": {
-	"id": "github/NLeSC/PattyData",
-	"title": "github/NLeSC/PattyData",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/PattyData",
-	"content": "None"
+	"github/Kaixhin/Autoencoders": {
+	"id": "github/Kaixhin/Autoencoders",
+	"title": "github/Kaixhin/Autoencoders",
+	"url": " https://rseng.github.io/software/repository/github/Kaixhin/Autoencoders",
+	"content": "Torch implementations of various types of autoencoders"
 	},
-	"github/NLeSC/nlesc-serverless-boilerplate": {
-	"id": "github/NLeSC/nlesc-serverless-boilerplate",
-	"title": "github/NLeSC/nlesc-serverless-boilerplate",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/nlesc-serverless-boilerplate",
-	"content": "An AWS amplify boilerplate web application"
+	"github/Kaixhin/Rainbow": {
+	"id": "github/Kaixhin/Rainbow",
+	"title": "github/Kaixhin/Rainbow",
+	"url": " https://rseng.github.io/software/repository/github/Kaixhin/Rainbow",
+	"content": "Rainbow: Combining Improvements in Deep Reinforcement Learning"
 	},
-	"github/NLeSC/ahn-pointcloud-viewer-ws": {
-	"id": "github/NLeSC/ahn-pointcloud-viewer-ws",
-	"title": "github/NLeSC/ahn-pointcloud-viewer-ws",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/ahn-pointcloud-viewer-ws",
-	"content": "Webservice for ahn pointcloud viewer"
+	"github/lazzati-astro/MCRaT": {
+	"id": "github/lazzati-astro/MCRaT",
+	"title": "github/lazzati-astro/MCRaT",
+	"url": " https://rseng.github.io/software/repository/github/lazzati-astro/MCRaT",
+	"content": "Monte Carlo Radiation Transfer Through an Astrophysical Jet"
 	},
-	"github/NLeSC/eEcology-Classification": {
-	"id": "github/NLeSC/eEcology-Classification",
-	"title": "github/NLeSC/eEcology-Classification",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/eEcology-Classification",
-	"content": "Classification tool"
+	"github/svi-opensource/libics": {
+	"id": "github/svi-opensource/libics",
+	"title": "github/svi-opensource/libics",
+	"url": " https://rseng.github.io/software/repository/github/svi-opensource/libics",
+	"content": "Image Cytometry Standard file reading and writing."
 	},
-	"github/NLeSC/eSalsa-MPI": {
-	"id": "github/NLeSC/eSalsa-MPI",
-	"title": "github/NLeSC/eSalsa-MPI",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/eSalsa-MPI",
-	"content": "This project contains the wide area MPI used in the eSalsa project"
+	"github/saberyoung/haffet": {
+	"id": "github/saberyoung/haffet",
+	"title": "github/saberyoung/haffet",
+	"url": " https://rseng.github.io/software/repository/github/saberyoung/haffet",
+	"content": "Repository to analyze SN photometric and spectroscopic data"
 	},
-	"github/NLeSC/UncertaintyVisualization": {
-	"id": "github/NLeSC/UncertaintyVisualization",
-	"title": "github/NLeSC/UncertaintyVisualization",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/UncertaintyVisualization",
-	"content": "None"
+	"github/swiss-armed-forces/openburst": {
+	"id": "github/swiss-armed-forces/openburst",
+	"title": "github/swiss-armed-forces/openburst",
+	"url": " https://rseng.github.io/software/repository/github/swiss-armed-forces/openburst",
+	"content": "Software framework for the development and testing of sensor coverage and real-time air target detection analysis."
 	},
-	"github/NLeSC/litstudy": {
-	"id": "github/NLeSC/litstudy",
-	"title": "github/NLeSC/litstudy",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/litstudy",
-	"content": "Using the power of Python and Jupyter notebooks to automate analysis of scientific literature"
+	"github/HARMONI-ELT/HSIM": {
+	"id": "github/HARMONI-ELT/HSIM",
+	"title": "github/HARMONI-ELT/HSIM",
+	"url": " https://rseng.github.io/software/repository/github/HARMONI-ELT/HSIM",
+	"content": "HSIM: HARMONI simulation pipeline"
 	},
-	"github/NLeSC/structure-from-motion": {
-	"id": "github/NLeSC/structure-from-motion",
-	"title": "github/NLeSC/structure-from-motion",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/structure-from-motion",
-	"content": "Structure from Motion Pipeline"
+	"github/symmy596/Polypy": {
+	"id": "github/symmy596/Polypy",
+	"title": "github/symmy596/Polypy",
+	"url": " https://rseng.github.io/software/repository/github/symmy596/Polypy",
+	"content": "polypy - Analysis Tools for Solid State Molecular Dynamics and Monte Carlo Trajectories"
 	},
-	"github/NLeSC/python-template": {
-	"id": "github/NLeSC/python-template",
-	"title": "github/NLeSC/python-template",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/python-template",
-	"content": "Netherlands eScience Center Python Template"
+	"github/symmy596/SurfinPy": {
+	"id": "github/symmy596/SurfinPy",
+	"title": "github/symmy596/SurfinPy",
+	"url": " https://rseng.github.io/software/repository/github/symmy596/SurfinPy",
+	"content": "Thermodynamic Phase Diagram Generator"
 	},
-	"github/NLeSC/xenon-grpc": {
-	"id": "github/NLeSC/xenon-grpc",
-	"title": "github/NLeSC/xenon-grpc",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/xenon-grpc",
-	"content": "Xenon grpc based server"
+	"github/lczech/gappa": {
+	"id": "github/lczech/gappa",
+	"title": "github/lczech/gappa",
+	"url": " https://rseng.github.io/software/repository/github/lczech/gappa",
+	"content": "A toolkit for analyzing and visualizing phylogenetic (placement) data"
 	},
-	"github/NLeSC/xenon-flow": {
-	"id": "github/NLeSC/xenon-flow",
-	"title": "github/NLeSC/xenon-flow",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/xenon-flow",
-	"content": "Run CWL workflows using Xenon"
+	"github/UNSW-CEEM/NEMSEER": {
+	"id": "github/UNSW-CEEM/NEMSEER",
+	"title": "github/UNSW-CEEM/NEMSEER",
+	"url": " https://rseng.github.io/software/repository/github/UNSW-CEEM/NEMSEER",
+	"content": "A package for downloading and handling forecasts for the National Electricity Market (NEM) from the Australian Energy Market Operator (AEMO)."
 	},
-	"github/NLeSC/docker-couch-admin": {
-	"id": "github/NLeSC/docker-couch-admin",
-	"title": "github/NLeSC/docker-couch-admin",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/docker-couch-admin",
-	"content": "Configures a web service using angular-schema-form and CouchDB"
+	"github/UNSW-CEEM/nempy": {
+	"id": "github/UNSW-CEEM/nempy",
+	"title": "github/UNSW-CEEM/nempy",
+	"url": " https://rseng.github.io/software/repository/github/UNSW-CEEM/nempy",
+	"content": "A flexible tool kit for modelling Australia&#39;s National Electricity Market dispatch procedure."
 	},
-	"github/NLeSC/root-conda-recipes": {
-	"id": "github/NLeSC/root-conda-recipes",
-	"title": "github/NLeSC/root-conda-recipes",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/root-conda-recipes",
-	"content": "Conda recipes for building ROOT 5 and ROOT 6 binaries, root_numpy, rootpy, root_pandas, with both Python 2 and Python 3 support."
+	"github/TPI-Immunogenetics/igmat": {
+	"id": "github/TPI-Immunogenetics/igmat",
+	"title": "github/TPI-Immunogenetics/igmat",
+	"url": " https://rseng.github.io/software/repository/github/TPI-Immunogenetics/igmat",
+	"content": "Antibody Multispecies Annotation Tool"
 	},
-	"github/NLeSC/case-law-app": {
-	"id": "github/NLeSC/case-law-app",
-	"title": "github/NLeSC/case-law-app",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/case-law-app",
-	"content": "None"
+	"github/fatmasevinck/enetLTS": {
+	"id": "github/fatmasevinck/enetLTS",
+	"title": "github/fatmasevinck/enetLTS",
+	"url": " https://rseng.github.io/software/repository/github/fatmasevinck/enetLTS",
+	"content": "Robust and sparse methods for high diemnsional data including gaussian, binomial and multinomial families"
 	},
-	"github/NLeSC/python-pcl": {
-	"id": "github/NLeSC/python-pcl",
-	"title": "github/NLeSC/python-pcl",
-	"url": " https://rseng.github.io/software/repository/github/NLeSC/python-pcl",
-	"content": "Python bindings to the pointcloud library (pcl)"
+	"github/dfujim/bfit": {
+	"id": "github/dfujim/bfit",
+	"title": "github/dfujim/bfit",
+	"url": " https://rseng.github.io/software/repository/github/dfujim/bfit",
+	"content": "A Python application for the analysis of β-NMR and β-NQR data taken at TRIUMF."
 	},
-	"github/HalHaggard/EARL": {
-	"id": "github/HalHaggard/EARL",
-	"title": "github/HalHaggard/EARL",
-	"url": " https://rseng.github.io/software/repository/github/HalHaggard/EARL",
-	"content": "Exoplanet Analytic Reflected Lightcurves (EARL): This Mathematica code allows you to compute the analytic form of a reflected lightcurve given a spherical harmonic decomposition of the planet albedo map and the viewing and orbital geometries. The theoretical foundation for this code is laid out in the paper &#34;Analytic Reflected Lightcurves for Exoplanets&#34; by Hal M. Haggard and Nicolas B. Cowan, which can be found the arXiv."
+	"github/BarquistLab/mason_paper": {
+	"id": "github/BarquistLab/mason_paper",
+	"title": "github/BarquistLab/mason_paper",
+	"url": " https://rseng.github.io/software/repository/github/BarquistLab/mason_paper",
+	"content": "Code and analysis for MASON paper"
 	},
-	"github/puregome/notebooks": {
-	"id": "github/puregome/notebooks",
-	"title": "github/puregome/notebooks",
-	"url": " https://rseng.github.io/software/repository/github/puregome/notebooks",
-	"content": "Notebooks of the PuReGoMe Project of the Netherlands eScience Center and Utrecht University."
+	"github/mlr-org/mcboost": {
+	"id": "github/mlr-org/mcboost",
+	"title": "github/mlr-org/mcboost",
+	"url": " https://rseng.github.io/software/repository/github/mlr-org/mcboost",
+	"content": "Multi-Calibration &amp; Multi-Accuracy Boosting for R"
 	},
-	"github/RECETOX/recetox-msfinder": {
-	"id": "github/RECETOX/recetox-msfinder",
-	"title": "github/RECETOX/recetox-msfinder",
-	"url": " https://rseng.github.io/software/repository/github/RECETOX/recetox-msfinder",
-	"content": "None"
+	"github/ArgoCanada/argodata": {
+	"id": "github/ArgoCanada/argodata",
+	"title": "github/ArgoCanada/argodata",
+	"url": " https://rseng.github.io/software/repository/github/ArgoCanada/argodata",
+	"content": "Download Argo Ocean Float Data"
 	},
-	"github/RECETOX/RIAssigner": {
-	"id": "github/RECETOX/RIAssigner",
-	"title": "github/RECETOX/RIAssigner",
-	"url": " https://rseng.github.io/software/repository/github/RECETOX/RIAssigner",
-	"content": "RIAssigner is a python tool for retention index (RI) computation for GC-MS data."
+	"github/younglab/origami": {
+	"id": "github/younglab/origami",
+	"title": "github/younglab/origami",
+	"url": " https://rseng.github.io/software/repository/github/younglab/origami",
+	"content": "Statistical Modeling of ChIA-PET interactions"
 	},
-	"github/RECETOX/MSMetaEnhancer": {
-	"id": "github/RECETOX/MSMetaEnhancer",
-	"title": "github/RECETOX/MSMetaEnhancer",
-	"url": " https://rseng.github.io/software/repository/github/RECETOX/MSMetaEnhancer",
-	"content": "Tool for mass spectra metadata annotation."
+	"github/NIFTy-PPL/JAXbind": {
+	"id": "github/NIFTy-PPL/JAXbind",
+	"title": "github/NIFTy-PPL/JAXbind",
+	"url": " https://rseng.github.io/software/repository/github/NIFTy-PPL/JAXbind",
+	"content": "Bind any function written in another language to JAX with support for JVP/VJP/batching/jit compilation"
 	},
-	"github/BioDepot/biodepot-launcher": {
-	"id": "github/BioDepot/biodepot-launcher",
-	"title": "github/BioDepot/biodepot-launcher",
-	"url": " https://rseng.github.io/software/repository/github/BioDepot/biodepot-launcher",
-	"content": "None"
+	"github/LDEO-CREW/Pythonic-DISORT": {
+	"id": "github/LDEO-CREW/Pythonic-DISORT",
+	"title": "github/LDEO-CREW/Pythonic-DISORT",
+	"url": " https://rseng.github.io/software/repository/github/LDEO-CREW/Pythonic-DISORT",
+	"content": "Discrete Ordinates Solver for the (1D) Radiative Transfer Equation in a single or multi-layer plane-parallel atmosphere. Coded entirely in Python 3. Based on Stamnes&#39; FORTRAN DISORT (see references in the Jupyter Notebook) and has its main features."
 	},
-	"github/RamanLab/iCOMIC": {
-	"id": "github/RamanLab/iCOMIC",
-	"title": "github/RamanLab/iCOMIC",
-	"url": " https://rseng.github.io/software/repository/github/RamanLab/iCOMIC",
-	"content": "None"
+	"github/mwaskom/seaborn": {
+	"id": "github/mwaskom/seaborn",
+	"title": "github/mwaskom/seaborn",
+	"url": " https://rseng.github.io/software/repository/github/mwaskom/seaborn",
+	"content": "Statistical data visualization in Python"
 	},
-	"github/wen-jams/bsavi": {
-	"id": "github/wen-jams/bsavi",
-	"title": "github/wen-jams/bsavi",
-	"url": " https://rseng.github.io/software/repository/github/wen-jams/bsavi",
-	"content": "Interactive visualizer for high-dimensional datasets and observables."
+	"github/aarondotter/iso": {
+	"id": "github/aarondotter/iso",
+	"title": "github/aarondotter/iso",
+	"url": " https://rseng.github.io/software/repository/github/aarondotter/iso",
+	"content": "MESA isochrone code"
 	},
-	"github/firefly-cpp/NiaARM": {
-	"id": "github/firefly-cpp/NiaARM",
-	"title": "github/firefly-cpp/NiaARM",
-	"url": " https://rseng.github.io/software/repository/github/firefly-cpp/NiaARM",
-	"content": "A minimalistic framework for Numerical Association Rule Mining"
+	"github/artis-mcrt/artis": {
+	"id": "github/artis-mcrt/artis",
+	"title": "github/artis-mcrt/artis",
+	"url": " https://rseng.github.io/software/repository/github/artis-mcrt/artis",
+	"content": "3D Monte Carlo radiative transfer code for supernovae"
 	},
-	"github/demorest/nanopipe": {
-	"id": "github/demorest/nanopipe",
-	"title": "github/demorest/nanopipe",
-	"url": " https://rseng.github.io/software/repository/github/demorest/nanopipe",
-	"content": "Calibration and TOA generation scripts for NANOGrav data"
+	"github/bbercovici/SBGAT": {
+	"id": "github/bbercovici/SBGAT",
+	"title": "github/bbercovici/SBGAT",
+	"url": " https://rseng.github.io/software/repository/github/bbercovici/SBGAT",
+	"content": "The implementation of the Small Bodies Geophysical Analysis Tool (SBGAT)"
 	},
-	"github/hytrac/amber": {
-	"id": "github/hytrac/amber",
-	"title": "github/hytrac/amber",
-	"url": " https://rseng.github.io/software/repository/github/hytrac/amber",
-	"content": "The Abundance Matching Box for the Epoch of Reionization (AMBER) is a semi-numerical code for modeling the cosmic dawn and reionization."
+	"github/DataBiosphere/wdl-parsers": {
+	"id": "github/DataBiosphere/wdl-parsers",
+	"title": "github/DataBiosphere/wdl-parsers",
+	"url": " https://rseng.github.io/software/repository/github/DataBiosphere/wdl-parsers",
+	"content": "A package that provides the generated ANTLR4 WDL parsers for Python."
 	},
-	"github/franciscovillaescusa/Pylians3": {
-	"id": "github/franciscovillaescusa/Pylians3",
-	"title": "github/franciscovillaescusa/Pylians3",
-	"url": " https://rseng.github.io/software/repository/github/franciscovillaescusa/Pylians3",
-	"content": "Libraries to analyze numerical simulations (python3)"
+	"github/locasto/libdisorder": {
+	"id": "github/locasto/libdisorder",
+	"title": "github/locasto/libdisorder",
+	"url": " https://rseng.github.io/software/repository/github/locasto/libdisorder",
+	"content": "A simple C library for entropy measurement of byte streams and other data."
 	},
-	"github/franciscovillaescusa/Pylians": {
-	"id": "github/franciscovillaescusa/Pylians",
-	"title": "github/franciscovillaescusa/Pylians",
-	"url": " https://rseng.github.io/software/repository/github/franciscovillaescusa/Pylians",
-	"content": "Libraries to analyze numerical simulations"
+	"github/intelligent-soft-robots/o80": {
+	"id": "github/intelligent-soft-robots/o80",
+	"title": "github/intelligent-soft-robots/o80",
+	"url": " https://rseng.github.io/software/repository/github/intelligent-soft-robots/o80",
+	"content": "synchronization of c++ processes via a custom python API"
 	},
-	"github/XuhanLiu/DrugEx": {
-	"id": "github/XuhanLiu/DrugEx",
-	"title": "github/XuhanLiu/DrugEx",
-	"url": " https://rseng.github.io/software/repository/github/XuhanLiu/DrugEx",
-	"content": "Deep learning toolkit for Drug Design with Pareto-based Multi-Objective optimization in Polypharmacology"
+	"github/bioinfodlsu/PHIStruct": {
+	"id": "github/bioinfodlsu/PHIStruct",
+	"title": "github/bioinfodlsu/PHIStruct",
+	"url": " https://rseng.github.io/software/repository/github/bioinfodlsu/PHIStruct",
+	"content": "Published in Bioinformatics. Phage-host interaction prediction tool that incorporates protein structure information in representing receptor-binding proteins (RBPs). It improves performance especially for phages with RBPs that have low sequence similarity to those of known phages"
 	},
-	"github/volkamerlab/opencadd": {
-	"id": "github/volkamerlab/opencadd",
-	"title": "github/volkamerlab/opencadd",
-	"url": " https://rseng.github.io/software/repository/github/volkamerlab/opencadd",
-	"content": "A Python library for structural cheminformatics"
+	"github/bioinfodlsu/phage-host-prediction": {
+	"id": "github/bioinfodlsu/phage-host-prediction",
+	"title": "github/bioinfodlsu/phage-host-prediction",
+	"url": " https://rseng.github.io/software/repository/github/bioinfodlsu/phage-host-prediction",
+	"content": "Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding proteins of phages. It presents improvements over using handcrafted sequence properties and eliminates the need to manually extract and select features from phage sequences"
 	},
-	"github/wdecoster/nanoQC": {
-	"id": "github/wdecoster/nanoQC",
-	"title": "github/wdecoster/nanoQC",
-	"url": " https://rseng.github.io/software/repository/github/wdecoster/nanoQC",
-	"content": "Quality control tools for nanopore sequencing data"
+	"github/Sudaraka88/LDWeaver": {
+	"id": "github/Sudaraka88/LDWeaver",
+	"title": "github/Sudaraka88/LDWeaver",
+	"url": " https://rseng.github.io/software/repository/github/Sudaraka88/LDWeaver",
+	"content": "Genomewide Epistasis Analysis on Bacteria"
 	},
-	"github/wdecoster/nanopack": {
-	"id": "github/wdecoster/nanopack",
-	"title": "github/wdecoster/nanopack",
-	"url": " https://rseng.github.io/software/repository/github/wdecoster/nanopack",
-	"content": "Easily install all nanopack scripts together"
+	"github/mrtommyb/ktransit": {
+	"id": "github/mrtommyb/ktransit",
+	"title": "github/mrtommyb/ktransit",
+	"url": " https://rseng.github.io/software/repository/github/mrtommyb/ktransit",
+	"content": "A simple exoplanet transit modeling tool in python"
 	},
-	"github/wdecoster/NanoPlot": {
-	"id": "github/wdecoster/NanoPlot",
-	"title": "github/wdecoster/NanoPlot",
-	"url": " https://rseng.github.io/software/repository/github/wdecoster/NanoPlot",
-	"content": "Plotting scripts for long read sequencing data"
+	"github/etempel/Bisous": {
+	"id": "github/etempel/Bisous",
+	"title": "github/etempel/Bisous",
+	"url": " https://rseng.github.io/software/repository/github/etempel/Bisous",
+	"content": "None"
 	},
-	"github/wdecoster/nanofilt": {
-	"id": "github/wdecoster/nanofilt",
-	"title": "github/wdecoster/nanofilt",
-	"url": " https://rseng.github.io/software/repository/github/wdecoster/nanofilt",
-	"content": "Filtering and trimming of long read sequencing data"
+	"github/AnkitBarik/planetMagFields": {
+	"id": "github/AnkitBarik/planetMagFields",
+	"title": "github/AnkitBarik/planetMagFields",
+	"url": " https://rseng.github.io/software/repository/github/AnkitBarik/planetMagFields",
+	"content": "Routines to plot magnetic fields of planets in our solar system"
 	},
-	"github/wdecoster/chopper": {
-	"id": "github/wdecoster/chopper",
-	"title": "github/wdecoster/chopper",
-	"url": " https://rseng.github.io/software/repository/github/wdecoster/chopper",
-	"content": "Rust implementation of NanoFilt+NanoLyse, both originally written in Python. This tool, intended for long read sequencing such as PacBio or ONT, filters and trims a fastq file."
+	"github/twinl/website": {
+	"id": "github/twinl/website",
+	"title": "github/twinl/website",
+	"url": " https://rseng.github.io/software/repository/github/twinl/website",
+	"content": "TwiNL: website code"
 	},
-	"github/wdecoster/nanoget": {
-	"id": "github/wdecoster/nanoget",
-	"title": "github/wdecoster/nanoget",
-	"url": " https://rseng.github.io/software/repository/github/wdecoster/nanoget",
-	"content": "Functions to extract information from Oxford Nanopore sequencing data and alignments"
+	"github/lmcinnes/umap": {
+	"id": "github/lmcinnes/umap",
+	"title": "github/lmcinnes/umap",
+	"url": " https://rseng.github.io/software/repository/github/lmcinnes/umap",
+	"content": "Uniform Manifold Approximation and Projection"
 	},
-	"github/wdecoster/nano-snakemake": {
-	"id": "github/wdecoster/nano-snakemake",
-	"title": "github/wdecoster/nano-snakemake",
-	"url": " https://rseng.github.io/software/repository/github/wdecoster/nano-snakemake",
-	"content": "A snakemake pipeline for SV analysis from nanopore genome sequencing"
+	"github/pierrehoudayer/RUBIS": {
+	"id": "github/pierrehoudayer/RUBIS",
+	"title": "github/pierrehoudayer/RUBIS",
+	"url": " https://rseng.github.io/software/repository/github/pierrehoudayer/RUBIS",
+	"content": "Rotation code Using Barotropy conservation over Isopotential Surfaces (RUBIS)"
 	},
-	"github/wdecoster/nanomath": {
-	"id": "github/wdecoster/nanomath",
-	"title": "github/wdecoster/nanomath",
-	"url": " https://rseng.github.io/software/repository/github/wdecoster/nanomath",
-	"content": "A few simple math function for other Oxford Nanopore processing scripts"
+	"github/learningsimulator/learningsimulator": {
+	"id": "github/learningsimulator/learningsimulator",
+	"title": "github/learningsimulator/learningsimulator",
+	"url": " https://rseng.github.io/software/repository/github/learningsimulator/learningsimulator",
+	"content": "Learning Simulator: A simulation software for animal and human learning"
 	},
-	"github/wdecoster/nanocomp": {
-	"id": "github/wdecoster/nanocomp",
-	"title": "github/wdecoster/nanocomp",
-	"url": " https://rseng.github.io/software/repository/github/wdecoster/nanocomp",
-	"content": "Comparison of multiple long read datasets"
+	"github/czbiohub-sf/Rapid-QC-MS": {
+	"id": "github/czbiohub-sf/Rapid-QC-MS",
+	"title": "github/czbiohub-sf/Rapid-QC-MS",
+	"url": " https://rseng.github.io/software/repository/github/czbiohub-sf/Rapid-QC-MS",
+	"content": "Realtime quality control for mass spectrometry data acquisition"
 	},
-	"github/wdecoster/NanoComp": {
-	"id": "github/wdecoster/NanoComp",
-	"title": "github/wdecoster/NanoComp",
-	"url": " https://rseng.github.io/software/repository/github/wdecoster/NanoComp",
-	"content": "Comparison of multiple long read datasets"
+	"github/alexrhowe/APOLLO": {
+	"id": "github/alexrhowe/APOLLO",
+	"title": "github/alexrhowe/APOLLO",
+	"url": " https://rseng.github.io/software/repository/github/alexrhowe/APOLLO",
+	"content": "Atmosphere retrieval code for exoplanets"
 	},
-	"github/wdecoster/nanostat": {
-	"id": "github/wdecoster/nanostat",
-	"title": "github/wdecoster/nanostat",
-	"url": " https://rseng.github.io/software/repository/github/wdecoster/nanostat",
-	"content": "Create statistic summary of an Oxford Nanopore read dataset"
+	"github/Acellera/htmd": {
+	"id": "github/Acellera/htmd",
+	"title": "github/Acellera/htmd",
+	"url": " https://rseng.github.io/software/repository/github/Acellera/htmd",
+	"content": "HTMD: Programming Environment for Molecular Discovery"
 	},
-	"github/wdecoster/nanolyse": {
-	"id": "github/wdecoster/nanolyse",
-	"title": "github/wdecoster/nanolyse",
-	"url": " https://rseng.github.io/software/repository/github/wdecoster/nanolyse",
-	"content": "Remove lambda phage reads from a fastq file"
+	"github/lantunes/cellpylib": {
+	"id": "github/lantunes/cellpylib",
+	"title": "github/lantunes/cellpylib",
+	"url": " https://rseng.github.io/software/repository/github/lantunes/cellpylib",
+	"content": "A library for working with Cellular Automata, for Python."
 	},
-	"github/thetisproject/thetis": {
-	"id": "github/thetisproject/thetis",
-	"title": "github/thetisproject/thetis",
-	"url": " https://rseng.github.io/software/repository/github/thetisproject/thetis",
-	"content": "Finite element flow solver for simulating coastal and estuarine flows."
+	"github/gxiaolab/scAllele": {
+	"id": "github/gxiaolab/scAllele",
+	"title": "github/gxiaolab/scAllele",
+	"url": " https://rseng.github.io/software/repository/github/gxiaolab/scAllele",
+	"content": "scAllele is a versatile tool to detect and analyze nucleotide variants in scRNA-seq."
 	},
-	"github/theonefromnowhere/FitCov": {
-	"id": "github/theonefromnowhere/FitCov",
-	"title": "github/theonefromnowhere/FitCov",
-	"url": " https://rseng.github.io/software/repository/github/theonefromnowhere/FitCov",
-	"content": "The code for the Fitted Covariance generation based on %paper link%"
+	"github/astroml/gatspy": {
+	"id": "github/astroml/gatspy",
+	"title": "github/astroml/gatspy",
+	"url": " https://rseng.github.io/software/repository/github/astroml/gatspy",
+	"content": "General tools for Astronomical Time Series in Python"
 	},
-	"github/phpuech/OT_Analysis": {
-	"id": "github/phpuech/OT_Analysis",
-	"title": "github/phpuech/OT_Analysis",
-	"url": " https://rseng.github.io/software/repository/github/phpuech/OT_Analysis",
-	"content": "Software for optical data force analysis / JPK Nanowizard"
+	"github/inpefess/gym-saturation": {
+	"id": "github/inpefess/gym-saturation",
+	"title": "github/inpefess/gym-saturation",
+	"url": " https://rseng.github.io/software/repository/github/inpefess/gym-saturation",
+	"content": "an OpenAI Gym environment for saturation provers"
 	},
-	"github/denglab/SeqSero": {
-	"id": "github/denglab/SeqSero",
-	"title": "github/denglab/SeqSero",
-	"url": " https://rseng.github.io/software/repository/github/denglab/SeqSero",
-	"content": "Salmonella serotyping from genome sequencing data"
+	"github/SihaoCheng/WD_models": {
+	"id": "github/SihaoCheng/WD_models",
+	"title": "github/SihaoCheng/WD_models",
+	"url": " https://rseng.github.io/software/repository/github/SihaoCheng/WD_models",
+	"content": "I provide a python package for transformations between WD photometry (Gaia, SDSS, WISE, and many more) and physical parameters, based on interpolation of existing atmosphere grid and cooling models. If you use this tool, please cite this website and the corresponding papers of atmosphere grid (synthetic colors) and cooling models. "
 	},
-	"github/lsncibb/microbiomeGWAS": {
-	"id": "github/lsncibb/microbiomeGWAS",
-	"title": "github/lsncibb/microbiomeGWAS",
-	"url": " https://rseng.github.io/software/repository/github/lsncibb/microbiomeGWAS",
-	"content": "None"
+	"github/Kuifje02/vrpy": {
+	"id": "github/Kuifje02/vrpy",
+	"title": "github/Kuifje02/vrpy",
+	"url": " https://rseng.github.io/software/repository/github/Kuifje02/vrpy",
+	"content": "A python framework for solving the VRP and its variants with column generation."
 	},
-	"github/garrelt/C2-Ray1D": {
-	"id": "github/garrelt/C2-Ray1D",
-	"title": "github/garrelt/C2-Ray1D",
-	"url": " https://rseng.github.io/software/repository/github/garrelt/C2-Ray1D",
-	"content": "1D version of C2-Ray"
+	"github/keatonb/Pyriod": {
+	"id": "github/keatonb/Pyriod",
+	"title": "github/keatonb/Pyriod",
+	"url": " https://rseng.github.io/software/repository/github/keatonb/Pyriod",
+	"content": "Python implementation of basic period detection and fitting routines for astronomical time series."
 	},
-	"github/garrelt/C2-Ray3Dm1D_Helium": {
-	"id": "github/garrelt/C2-Ray3Dm1D_Helium",
-	"title": "github/garrelt/C2-Ray3Dm1D_Helium",
-	"url": " https://rseng.github.io/software/repository/github/garrelt/C2-Ray3Dm1D_Helium",
-	"content": "C2-Ray radiative transfer / photo-ionziation code, version with helium, combining 1D and 3D"
+	"github/keatonb/TESS_PRF": {
+	"id": "github/keatonb/TESS_PRF",
+	"title": "github/keatonb/TESS_PRF",
+	"url": " https://rseng.github.io/software/repository/github/keatonb/TESS_PRF",
+	"content": "Tools to display the TESS pixel response function (PRF) at any location on the detector"
 	},
-	"github/sebhaan/geobo": {
-	"id": "github/sebhaan/geobo",
-	"title": "github/sebhaan/geobo",
-	"url": " https://rseng.github.io/software/repository/github/sebhaan/geobo",
-	"content": "Python package for Multi-Objective Bayesian Optimisation and Joint Inversion"
+	"github/hyperopt/hyperopt": {
+	"id": "github/hyperopt/hyperopt",
+	"title": "github/hyperopt/hyperopt",
+	"url": " https://rseng.github.io/software/repository/github/hyperopt/hyperopt",
+	"content": "Distributed Asynchronous Hyperparameter Optimization in Python"
 	},
-	"github/rega-cev/virulign": {
-	"id": "github/rega-cev/virulign",
-	"title": "github/rega-cev/virulign",
-	"url": " https://rseng.github.io/software/repository/github/rega-cev/virulign",
-	"content": "VIRULIGN: fast codon-correct alignment and annotation of viral genomes"
+	"github/Illumina/ExpansionHunterDenovo": {
+	"id": "github/Illumina/ExpansionHunterDenovo",
+	"title": "github/Illumina/ExpansionHunterDenovo",
+	"url": " https://rseng.github.io/software/repository/github/Illumina/ExpansionHunterDenovo",
+	"content": "(EHdn) is a suite of tools for detecting novel expansions of short tandem repeats (STRs)."
 	},
-	"github/luinix/pesco": {
-	"id": "github/luinix/pesco",
-	"title": "github/luinix/pesco",
-	"url": " https://rseng.github.io/software/repository/github/luinix/pesco",
-	"content": "Cognitive stimulation tool for elderly or cognitively impaired"
+	"github/Illumina/akt": {
+	"id": "github/Illumina/akt",
+	"title": "github/Illumina/akt",
+	"url": " https://rseng.github.io/software/repository/github/Illumina/akt",
+	"content": "Ancestry and Kinship Tools"
 	},
-	"github/bethgelab/foolbox": {
-	"id": "github/bethgelab/foolbox",
-	"title": "github/bethgelab/foolbox",
-	"url": " https://rseng.github.io/software/repository/github/bethgelab/foolbox",
-	"content": "A Python toolbox to create adversarial examples that fool neural networks in PyTorch, TensorFlow, and JAX"
+	"github/Illumina/MarViN": {
+	"id": "github/Illumina/MarViN",
+	"title": "github/Illumina/MarViN",
+	"url": " https://rseng.github.io/software/repository/github/Illumina/MarViN",
+	"content": "a method for rapid genotype refinement for whole-genome sequencing data using multi-variate normal distribution.  Whole-genome low-coverage sequencing has been combined with linkage-disequilibrium (LD) based genotype refinement to accurately and cost-effectively infer genotypes in large cohorts of individuals."
 	},
-	"github/ukoethe/vigra": {
-	"id": "github/ukoethe/vigra",
-	"title": "github/ukoethe/vigra",
-	"url": " https://rseng.github.io/software/repository/github/ukoethe/vigra",
-	"content": "a generic C++ library for image analysis"
+	"github/Illumina/SpliceAI": {
+	"id": "github/Illumina/SpliceAI",
+	"title": "github/Illumina/SpliceAI",
+	"url": " https://rseng.github.io/software/repository/github/Illumina/SpliceAI",
+	"content": "A deep learning-based tool to identify splice variants"
 	},
-	"github/ismaelpessa/PyMUSE": {
-	"id": "github/ismaelpessa/PyMUSE",
-	"title": "github/ismaelpessa/PyMUSE",
-	"url": " https://rseng.github.io/software/repository/github/ismaelpessa/PyMUSE",
-	"content": "None"
+	"github/Illumina/strelka": {
+	"id": "github/Illumina/strelka",
+	"title": "github/Illumina/strelka",
+	"url": " https://rseng.github.io/software/repository/github/Illumina/strelka",
+	"content": "Strelka2 germline and somatic small variant caller"
 	},
-	"github/MarcNeveu/IcyDwarf": {
-	"id": "github/MarcNeveu/IcyDwarf",
-	"title": "github/MarcNeveu/IcyDwarf",
-	"url": " https://rseng.github.io/software/repository/github/MarcNeveu/IcyDwarf",
-	"content": "Coupled geophysical-geochemical-orbital evolution model of icy worlds."
+	"github/Illumina/manta": {
+	"id": "github/Illumina/manta",
+	"title": "github/Illumina/manta",
+	"url": " https://rseng.github.io/software/repository/github/Illumina/manta",
+	"content": "Structural variant and indel caller for mapped sequencing data"
 	},
-	"github/sihanjiao/j-comb": {
-	"id": "github/sihanjiao/j-comb",
-	"title": "github/sihanjiao/j-comb",
-	"url": " https://rseng.github.io/software/repository/github/sihanjiao/j-comb",
-	"content": "None"
+	"github/Illumina/canvas": {
+	"id": "github/Illumina/canvas",
+	"title": "github/Illumina/canvas",
+	"url": " https://rseng.github.io/software/repository/github/Illumina/canvas",
+	"content": "a tool for calling copy number variants (CNVs) from human DNA sequencing data."
 	},
-	"github/Adamtaranto/Yanagiba": {
-	"id": "github/Adamtaranto/Yanagiba",
-	"title": "github/Adamtaranto/Yanagiba",
-	"url": " https://rseng.github.io/software/repository/github/Adamtaranto/Yanagiba",
-	"content": "Filter and slice Nanopore reads which have been basecalled with Albacore."
+	"github/NMBU-Data-Science/RENT": {
+	"id": "github/NMBU-Data-Science/RENT",
+	"title": "github/NMBU-Data-Science/RENT",
+	"url": " https://rseng.github.io/software/repository/github/NMBU-Data-Science/RENT",
+	"content": "Feature selection method based on repeated elastic net."
 	},
-	"github/steineggerlab/foldmason": {
-	"id": "github/steineggerlab/foldmason",
-	"title": "github/steineggerlab/foldmason",
-	"url": " https://rseng.github.io/software/repository/github/steineggerlab/foldmason",
-	"content": "Multiple Protein Structure Alignment at Scale with FoldMason"
+	"github/desmid/mview": {
+	"id": "github/desmid/mview",
+	"title": "github/desmid/mview",
+	"url": " https://rseng.github.io/software/repository/github/desmid/mview",
+	"content": "MView extracts and reformats the results of a sequence database search or multiple alignment."
 	},
-	"github/steineggerlab/foldseek": {
-	"id": "github/steineggerlab/foldseek",
-	"title": "github/steineggerlab/foldseek",
-	"url": " https://rseng.github.io/software/repository/github/steineggerlab/foldseek",
-	"content": "Foldseek enables fast and sensitive comparisons of large structure sets."
+	"github/wmalab/EnHiC": {
+	"id": "github/wmalab/EnHiC",
+	"title": "github/wmalab/EnHiC",
+	"url": " https://rseng.github.io/software/repository/github/wmalab/EnHiC",
+	"content": "Enhancing Hi-C matrix resolution"
 	},
-	"github/timkartar/RNAscape": {
-	"id": "github/timkartar/RNAscape",
-	"title": "github/timkartar/RNAscape",
-	"url": " https://rseng.github.io/software/repository/github/timkartar/RNAscape",
-	"content": "Geometry faithful 2D RNA visualization"
+	"github/KVSlab/turtleFSI": {
+	"id": "github/KVSlab/turtleFSI",
+	"title": "github/KVSlab/turtleFSI",
+	"url": " https://rseng.github.io/software/repository/github/KVSlab/turtleFSI",
+	"content": "Monolithic Fluid-Structure Interaction (FSI) solver"
 	},
-	"github/Sheng-Qi-Yang/HIILines": {
-	"id": "github/Sheng-Qi-Yang/HIILines",
-	"title": "github/Sheng-Qi-Yang/HIILines",
-	"url": " https://rseng.github.io/software/repository/github/Sheng-Qi-Yang/HIILines",
-	"content": "An analytical ionized ISM emission line model. "
+	"github/KVSlab/VaMPy": {
+	"id": "github/KVSlab/VaMPy",
+	"title": "github/KVSlab/VaMPy",
+	"url": " https://rseng.github.io/software/repository/github/KVSlab/VaMPy",
+	"content": "A collection of tools for pre-processing, simulating, and post-processing vascular morphologies."
 	},
-	"github/SPARTA-dev/SPARTA": {
-	"id": "github/SPARTA-dev/SPARTA",
-	"title": "github/SPARTA-dev/SPARTA",
-	"url": " https://rseng.github.io/software/repository/github/SPARTA-dev/SPARTA",
+	"github/sahasuparna/DeMoS": {
+	"id": "github/sahasuparna/DeMoS",
+	"title": "github/sahasuparna/DeMoS",
+	"url": " https://rseng.github.io/software/repository/github/sahasuparna/DeMoS",
 	"content": "None"
 	},
-	"github/stillwater-sc/universal": {
-	"id": "github/stillwater-sc/universal",
-	"title": "github/stillwater-sc/universal",
-	"url": " https://rseng.github.io/software/repository/github/stillwater-sc/universal",
-	"content": "Large collection of number systems providing custom arithmetic and mixed-precision algorithms for AI, Machine Learning, Computer Vision, Signal Processing, CAE, EDA, control, optimization, estimation, and approximation."
-	},
-	"github/rx-li/EasyCellType": {
-	"id": "github/rx-li/EasyCellType",
-	"title": "github/rx-li/EasyCellType",
-	"url": " https://rseng.github.io/software/repository/github/rx-li/EasyCellType",
+	"github/MolecularAI/DockStreamCommunity": {
+	"id": "github/MolecularAI/DockStreamCommunity",
+	"title": "github/MolecularAI/DockStreamCommunity",
+	"url": " https://rseng.github.io/software/repository/github/MolecularAI/DockStreamCommunity",
 	"content": "None"
 	},
-	"github/dnarayanan/powderday": {
-	"id": "github/dnarayanan/powderday",
-	"title": "github/dnarayanan/powderday",
-	"url": " https://rseng.github.io/software/repository/github/dnarayanan/powderday",
-	"content": "powderday dust radiative transfer"
+	"github/rudolffu/pyfosc": {
+	"id": "github/rudolffu/pyfosc",
+	"title": "github/rudolffu/pyfosc",
+	"url": " https://rseng.github.io/software/repository/github/rudolffu/pyfosc",
+	"content": "PyFOSC is a pipeline toolbox for spectroscopic data reduction written in Python. It can be used for FOSC data from Xinglong/Lijiang 2-meter telescopes."
 	},
-	"github/kidusasfaw/spatPomp": {
-	"id": "github/kidusasfaw/spatPomp",
-	"title": "github/kidusasfaw/spatPomp",
-	"url": " https://rseng.github.io/software/repository/github/kidusasfaw/spatPomp",
-	"content": "R package for statistical inference of spatiotemporal partially observed Markov processes"
+	"github/glotzerlab/freud": {
+	"id": "github/glotzerlab/freud",
+	"title": "github/glotzerlab/freud",
+	"url": " https://rseng.github.io/software/repository/github/glotzerlab/freud",
+	"content": "Powerful, efficient particle trajectory analysis in scientific Python."
+	},
+	"github/glotzerlab/coxeter": {
+	"id": "github/glotzerlab/coxeter",
+	"title": "github/glotzerlab/coxeter",
+	"url": " https://rseng.github.io/software/repository/github/glotzerlab/coxeter",
+	"content": "Collection of tools to help initialize and manipulate shapes."
+	},
+	"github/glotzerlab/hoomd-blue": {
+	"id": "github/glotzerlab/hoomd-blue",
+	"title": "github/glotzerlab/hoomd-blue",
+	"url": " https://rseng.github.io/software/repository/github/glotzerlab/hoomd-blue",
+	"content": "Molecular dynamics and Monte Carlo soft matter simulation on GPUs."
+	},
+	"github/DataIntellSystLab/KARGA": {
+	"id": "github/DataIntellSystLab/KARGA",
+	"title": "github/DataIntellSystLab/KARGA",
+	"url": " https://rseng.github.io/software/repository/github/DataIntellSystLab/KARGA",
+	"content": "Multi-platform Toolkit for k-mer-based Antibiotic Resistance Gene Analysis of High-throughput Sequencing Data"
 	},
-	"github/cole-trapnell-lab/monocle3": {
-	"id": "github/cole-trapnell-lab/monocle3",
-	"title": "github/cole-trapnell-lab/monocle3",
-	"url": " https://rseng.github.io/software/repository/github/cole-trapnell-lab/monocle3",
-	"content": "An analysis toolkit for single-cell RNA-seq."
+	"github/shahmoradi/grb_world": {
+	"id": "github/shahmoradi/grb_world",
+	"title": "github/shahmoradi/grb_world",
+	"url": " https://rseng.github.io/software/repository/github/shahmoradi/grb_world",
+	"content": "Containing codes for the SGRB and LGRB world models"
 	},
-	"github/cole-trapnell-lab/cufflinks": {
-	"id": "github/cole-trapnell-lab/cufflinks",
-	"title": "github/cole-trapnell-lab/cufflinks",
-	"url": " https://rseng.github.io/software/repository/github/cole-trapnell-lab/cufflinks",
-	"content": "a reference-guided assembler that assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples."
+	"github/jordanflitter/21cmFirstCLASS": {
+	"id": "github/jordanflitter/21cmFirstCLASS",
+	"title": "github/jordanflitter/21cmFirstCLASS",
+	"url": " https://rseng.github.io/software/repository/github/jordanflitter/21cmFirstCLASS",
+	"content": "This is an extension of the popular 21cmFAST code that interfaces with CLASS to generate initial conditions at recombination that are consistent with the input cosmological model"
 	},
-	"github/SophieMLV/axionHMcode": {
-	"id": "github/SophieMLV/axionHMcode",
-	"title": "github/SophieMLV/axionHMcode",
-	"url": " https://rseng.github.io/software/repository/github/SophieMLV/axionHMcode",
-	"content": "A fully expanded halo model to calculate the non-linear power spectrum in a mixed dark matter cosmology with ultra-light axions"
+	"github/koenderks/jaspAudit": {
+	"id": "github/koenderks/jaspAudit",
+	"title": "github/koenderks/jaspAudit",
+	"url": " https://rseng.github.io/software/repository/github/koenderks/jaspAudit",
+	"content": "The Audit module is developed to facilitate statistical auditing in both Bayesian and classical manifestations. The main feature is a workflow that helps guide auditors through the sampling process. Additionally, there are stand-alone analyses for planning, selecting, and evaluating a sample. The module is based on the R package jfa."
 	},
-	"github/snowformatics/macrobot": {
-	"id": "github/snowformatics/macrobot",
-	"title": "github/snowformatics/macrobot",
-	"url": " https://rseng.github.io/software/repository/github/snowformatics/macrobot",
-	"content": "Macrobot is an open source image analysis software for studying plant-pathogen interactions on macroscopic level."
+	"github/AlanPearl/diffopt": {
+	"id": "github/AlanPearl/diffopt",
+	"title": "github/AlanPearl/diffopt",
+	"url": " https://rseng.github.io/software/repository/github/AlanPearl/diffopt",
+	"content": "Collection of packages aiding in parallelization and optimization of differentiable and many-parameter models"
 	},
-	"github/SAIL-Labs/AMICAL": {
-	"id": "github/SAIL-Labs/AMICAL",
-	"title": "github/SAIL-Labs/AMICAL",
-	"url": " https://rseng.github.io/software/repository/github/SAIL-Labs/AMICAL",
-	"content": "Extraction pipeline and analysis tools for Aperture Masking Interferometry mode of the last generation of instruments (ground-based and space)."
+	"github/iraf-community/pyraf": {
+	"id": "github/iraf-community/pyraf",
+	"title": "github/iraf-community/pyraf",
+	"url": " https://rseng.github.io/software/repository/github/iraf-community/pyraf",
+	"content": "Command language for IRAF based on Python."
 	},
-	"github/3d-pli/fastpli": {
-	"id": "github/3d-pli/fastpli",
-	"title": "github/3d-pli/fastpli",
-	"url": " https://rseng.github.io/software/repository/github/3d-pli/fastpli",
-	"content": "Fiber Architecture Simulation Toolbox for 3D Polarized Light Imaging"
+	"github/iraf-community/iraf": {
+	"id": "github/iraf-community/iraf",
+	"title": "github/iraf-community/iraf",
+	"url": " https://rseng.github.io/software/repository/github/iraf-community/iraf",
+	"content": "IRAF - Image Reduction and Analysis Facility"
 	},
-	"github/precice/micro-manager": {
-	"id": "github/precice/micro-manager",
-	"title": "github/precice/micro-manager",
-	"url": " https://rseng.github.io/software/repository/github/precice/micro-manager",
-	"content": "A manager tool to facilitate two-scale coupling in multi-physics simulations using preCICE."
+	"github/virgesmith/neworder": {
+	"id": "github/virgesmith/neworder",
+	"title": "github/virgesmith/neworder",
+	"url": " https://rseng.github.io/software/repository/github/virgesmith/neworder",
+	"content": "A dynamic microsimulation framework for python"
 	},
-	"github/precice/aste": {
-	"id": "github/precice/aste",
-	"title": "github/precice/aste",
-	"url": " https://rseng.github.io/software/repository/github/precice/aste",
-	"content": "Artificial Solver Testing Environment"
+	"github/Johannes-Sahlmann/pygacs": {
+	"id": "github/Johannes-Sahlmann/pygacs",
+	"title": "github/Johannes-Sahlmann/pygacs",
+	"url": " https://rseng.github.io/software/repository/github/Johannes-Sahlmann/pygacs",
+	"content": "Toolkit to manipulate Gaia catalogue tables hosted at ESAC archive."
 	},
-	"github/smog-server/OpenSMOG": {
-	"id": "github/smog-server/OpenSMOG",
-	"title": "github/smog-server/OpenSMOG",
-	"url": " https://rseng.github.io/software/repository/github/smog-server/OpenSMOG",
-	"content": "OpenSMOG is a Python library for performing molecular dynamics simulations using Structure-Based Models. OpenSMOG uses OpenMM."
+	"github/conda-forge/conda-smithy": {
+	"id": "github/conda-forge/conda-smithy",
+	"title": "github/conda-forge/conda-smithy",
+	"url": " https://rseng.github.io/software/repository/github/conda-forge/conda-smithy",
+	"content": "The tool for managing conda-forge feedstocks."
 	},
-	"github/rhenkin/visxhclust": {
-	"id": "github/rhenkin/visxhclust",
-	"title": "github/rhenkin/visxhclust",
-	"url": " https://rseng.github.io/software/repository/github/rhenkin/visxhclust",
-	"content": "A Shiny app and functions for visual exploration of hierarchical clustering."
+	"github/upb-lea/gym-electric-motor": {
+	"id": "github/upb-lea/gym-electric-motor",
+	"title": "github/upb-lea/gym-electric-motor",
+	"url": " https://rseng.github.io/software/repository/github/upb-lea/gym-electric-motor",
+	"content": "Gym Electric Motor (GEM): An OpenAI Gym Environment for Electric Motors"
 	},
-	"github/vergauwenthomas/MetObs_toolkit": {
-	"id": "github/vergauwenthomas/MetObs_toolkit",
-	"title": "github/vergauwenthomas/MetObs_toolkit",
-	"url": " https://rseng.github.io/software/repository/github/vergauwenthomas/MetObs_toolkit",
-	"content": "A toolkit for using non-traditional meteorological observations"
+	"github/upb-lea/ElectricGrid.jl": {
+	"id": "github/upb-lea/ElectricGrid.jl",
+	"title": "github/upb-lea/ElectricGrid.jl",
+	"url": " https://rseng.github.io/software/repository/github/upb-lea/ElectricGrid.jl",
+	"content": "A time domain electrical energy grid modeling and simulation tool with a focus on the control of power electronics converters"
 	},
-	"github/damocles-code/damocles": {
-	"id": "github/damocles-code/damocles",
-	"title": "github/damocles-code/damocles",
-	"url": " https://rseng.github.io/software/repository/github/damocles-code/damocles",
+	"github/upb-lea/openmodelica-microgrid-gym": {
+	"id": "github/upb-lea/openmodelica-microgrid-gym",
+	"title": "github/upb-lea/openmodelica-microgrid-gym",
+	"url": " https://rseng.github.io/software/repository/github/upb-lea/openmodelica-microgrid-gym",
+	"content": "OpenModelica Microgrid Gym (OMG): An OpenAI Gym Environment for Microgrids"
+	},
+	"github/dmvandamt/beyonce": {
+	"id": "github/dmvandamt/beyonce",
+	"title": "github/dmvandamt/beyonce",
+	"url": " https://rseng.github.io/software/repository/github/dmvandamt/beyonce",
 	"content": "None"
 	},
-	"github/GRIT-RBSim/GRIT": {
-	"id": "github/GRIT-RBSim/GRIT",
-	"title": "github/GRIT-RBSim/GRIT",
-	"url": " https://rseng.github.io/software/repository/github/GRIT-RBSim/GRIT",
-	"content": "Gravitational Rigid-body InTegrators, for simulating the coupled dynamics of both spin and orbit."
+	"github/ByrumLab/proteoDA": {
+	"id": "github/ByrumLab/proteoDA",
+	"title": "github/ByrumLab/proteoDA",
+	"url": " https://rseng.github.io/software/repository/github/ByrumLab/proteoDA",
+	"content": "None"
 	},
-	"github/KiranLDA/PAMLr": {
-	"id": "github/KiranLDA/PAMLr",
-	"title": "github/KiranLDA/PAMLr",
-	"url": " https://rseng.github.io/software/repository/github/KiranLDA/PAMLr",
-	"content": "Pressure, Activity, Magnetism and Light data analysis in R"
+	"github/pencil-code/pencil-code": {
+	"id": "github/pencil-code/pencil-code",
+	"title": "github/pencil-code/pencil-code",
+	"url": " https://rseng.github.io/software/repository/github/pencil-code/pencil-code",
+	"content": "A high-order finite-difference code for compressible hydrodynamic flows with magnetic fields and particles"
 	},
-	"github/dshawul/NebulaSEM": {
-	"id": "github/dshawul/NebulaSEM",
-	"title": "github/dshawul/NebulaSEM",
-	"url": " https://rseng.github.io/software/repository/github/dshawul/NebulaSEM",
-	"content": "Finite Volume (FV) and high-order Discontinuous Galerkin (DG) solver"
+	"github/agombolay/ribose-map": {
+	"id": "github/agombolay/ribose-map",
+	"title": "github/agombolay/ribose-map",
+	"url": " https://rseng.github.io/software/repository/github/agombolay/ribose-map",
+	"content": "None"
 	},
-	"github/SMI/SmiServices": {
-	"id": "github/SMI/SmiServices",
-	"title": "github/SMI/SmiServices",
-	"url": " https://rseng.github.io/software/repository/github/SMI/SmiServices",
-	"content": "Scale-able loading, linking and anonymisation of DICOM images for healthcare research environments (e.g. Safe Havens)"
+	"github/statgen/popscle": {
+	"id": "github/statgen/popscle",
+	"title": "github/statgen/popscle",
+	"url": " https://rseng.github.io/software/repository/github/statgen/popscle",
+	"content": "A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools"
 	},
-	"github/TRASAL/AMBER": {
-	"id": "github/TRASAL/AMBER",
-	"title": "github/TRASAL/AMBER",
-	"url": " https://rseng.github.io/software/repository/github/TRASAL/AMBER",
-	"content": "A many-core transient searching pipeline, designed to search in real-time for Fast Radio Bursts."
+	"github/statgen/Minimac4": {
+	"id": "github/statgen/Minimac4",
+	"title": "github/statgen/Minimac4",
+	"url": " https://rseng.github.io/software/repository/github/statgen/Minimac4",
+	"content": "a lower memory and more computationally efficient implementation of the genotype imputation algorithms in minimac/mininac2/minimac3."
 	},
-	"github/TRASAL/psrdada-python": {
-	"id": "github/TRASAL/psrdada-python",
-	"title": "github/TRASAL/psrdada-python",
-	"url": " https://rseng.github.io/software/repository/github/TRASAL/psrdada-python",
-	"content": "Python bindings to the PSRDada ringbuffer implementation"
+	"github/statgen/demuxlet": {
+	"id": "github/statgen/demuxlet",
+	"title": "github/statgen/demuxlet",
+	"url": " https://rseng.github.io/software/repository/github/statgen/demuxlet",
+	"content": "Genetic multiplexing of barcoded single cell RNA-seq"
 	},
-	"github/exobssim/rapoc-public": {
-	"id": "github/exobssim/rapoc-public",
-	"title": "github/exobssim/rapoc-public",
-	"url": " https://rseng.github.io/software/repository/github/exobssim/rapoc-public",
-	"content": "Rapoc uses molecular absorption measurements (i.e. wavelength-dependent opacities) to calculate Rosseland and Planck mean opacities that are commonly used in atmospheric modelling."
+	"github/GRChombo/GRFolres": {
+	"id": "github/GRChombo/GRFolres",
+	"title": "github/GRChombo/GRFolres",
+	"url": " https://rseng.github.io/software/repository/github/GRChombo/GRFolres",
+	"content": "Extension to GRChombo for Modified Gravity simulations"
 	},
-	"github/eggplantbren/RJObject": {
-	"id": "github/eggplantbren/RJObject",
-	"title": "github/eggplantbren/RJObject",
-	"url": " https://rseng.github.io/software/repository/github/eggplantbren/RJObject",
-	"content": "General code for birth/death stuff within DNest3"
+	"github/GRChombo/GRChombo": {
+	"id": "github/GRChombo/GRChombo",
+	"title": "github/GRChombo/GRChombo",
+	"url": " https://rseng.github.io/software/repository/github/GRChombo/GRChombo",
+	"content": "An AMR based open-source code for numerical relativity simulations."
 	},
-	"github/eggplantbren/Exoplanet": {
-	"id": "github/eggplantbren/Exoplanet",
-	"title": "github/eggplantbren/Exoplanet",
-	"url": " https://rseng.github.io/software/repository/github/eggplantbren/Exoplanet",
-	"content": "Exoplanet stuff with RJObject and lookup tables"
+	"github/GRChombo/GRDzhadzha": {
+	"id": "github/GRChombo/GRDzhadzha",
+	"title": "github/GRChombo/GRDzhadzha",
+	"url": " https://rseng.github.io/software/repository/github/GRChombo/GRDzhadzha",
+	"content": "A code to evolve matter on curved spacetimes with an analytic time and space dependence, e.g. black holes"
 	},
-	"github/eggplantbren/DNest4": {
-	"id": "github/eggplantbren/DNest4",
-	"title": "github/eggplantbren/DNest4",
-	"url": " https://rseng.github.io/software/repository/github/eggplantbren/DNest4",
-	"content": "Diffusive Nested Sampling"
+	"github/sebastien-plutniak/archeoviz": {
+	"id": "github/sebastien-plutniak/archeoviz",
+	"title": "github/sebastien-plutniak/archeoviz",
+	"url": " https://rseng.github.io/software/repository/github/sebastien-plutniak/archeoviz",
+	"content": "Visualisation, Exploration, and Web Communication of Archaeological Spatial Data"
 	},
-	"github/eggplantbren/DNest3": {
-	"id": "github/eggplantbren/DNest3",
-	"title": "github/eggplantbren/DNest3",
-	"url": " https://rseng.github.io/software/repository/github/eggplantbren/DNest3",
-	"content": "Diffusive Nested Sampling"
+	"github/sebastien-plutniak/archeofrag": {
+	"id": "github/sebastien-plutniak/archeofrag",
+	"title": "github/sebastien-plutniak/archeofrag",
+	"url": " https://rseng.github.io/software/repository/github/sebastien-plutniak/archeofrag",
+	"content": "R package for Refitting and Spatial Analysis in Archaeology"
 	},
-	"github/eggplantbren/RMHB": {
-	"id": "github/eggplantbren/RMHB",
-	"title": "github/eggplantbren/RMHB",
-	"url": " https://rseng.github.io/software/repository/github/eggplantbren/RMHB",
-	"content": "Source code for &#39;hierarchical reverberation mapping&#39;"
+	"github/zjupgx/modig": {
+	"id": "github/zjupgx/modig",
+	"title": "github/zjupgx/modig",
+	"url": " https://rseng.github.io/software/repository/github/zjupgx/modig",
+	"content": "MODIG: Integrating Multi-Omics and Multi-Dimensional Gene Network for Cancer Driver Gene Identification based on Graph Attention Network Model"
 	},
-	"github/ChengF-Lab/AOPEDF": {
-	"id": "github/ChengF-Lab/AOPEDF",
-	"title": "github/ChengF-Lab/AOPEDF",
-	"url": " https://rseng.github.io/software/repository/github/ChengF-Lab/AOPEDF",
-	"content": "None"
+	"github/CarlosCoba/XookSuut-code": {
+	"id": "github/CarlosCoba/XookSuut-code",
+	"title": "github/CarlosCoba/XookSuut-code",
+	"url": " https://rseng.github.io/software/repository/github/CarlosCoba/XookSuut-code",
+	"content": "XookSuut is a python tool for modeling non-circular flows in galaxies with resolved velocity maps."
 	},
-	"github/Natsiopoulos/ARDL": {
-	"id": "github/Natsiopoulos/ARDL",
-	"title": "github/Natsiopoulos/ARDL",
-	"url": " https://rseng.github.io/software/repository/github/Natsiopoulos/ARDL",
-	"content": "ARDL, ECM and Bounds-Test for Cointegration"
+	"github/ELeeAstro/gCMCRT": {
+	"id": "github/ELeeAstro/gCMCRT",
+	"title": "github/ELeeAstro/gCMCRT",
+	"url": " https://rseng.github.io/software/repository/github/ELeeAstro/gCMCRT",
+	"content": "3D Monte Carlo Radiative Transfer for exoplanet atmospheres using GPUs."
 	},
-	"github/thieu1995/permetrics": {
-	"id": "github/thieu1995/permetrics",
-	"title": "github/thieu1995/permetrics",
-	"url": " https://rseng.github.io/software/repository/github/thieu1995/permetrics",
-	"content": "Artificial intelligence (AI, ML, DL) performance metrics implemented in Python"
+	"github/RoelofBerg/limereg": {
+	"id": "github/RoelofBerg/limereg",
+	"title": "github/RoelofBerg/limereg",
+	"url": " https://rseng.github.io/software/repository/github/RoelofBerg/limereg",
+	"content": "Lightweight, derivative based, rigid, 2D Image Registration"
 	},
-	"github/sparks-baird/xtal2png": {
-	"id": "github/sparks-baird/xtal2png",
-	"title": "github/sparks-baird/xtal2png",
-	"url": " https://rseng.github.io/software/repository/github/sparks-baird/xtal2png",
-	"content": "Encode/decode a crystal structure to/from a grayscale PNG image for direct use with image-based machine learning models such as Palette."
+	"github/mateidavid/fast5": {
+	"id": "github/mateidavid/fast5",
+	"title": "github/mateidavid/fast5",
+	"url": " https://rseng.github.io/software/repository/github/mateidavid/fast5",
+	"content": "A C++ header-only library for reading Oxford Nanopore Fast5 files"
 	},
-	"github/GrainLearning/grainLearning": {
-	"id": "github/GrainLearning/grainLearning",
-	"title": "github/GrainLearning/grainLearning",
-	"url": " https://rseng.github.io/software/repository/github/GrainLearning/grainLearning",
-	"content": "A Bayesian uncertainty quantification toolbox for discrete and continuum numerical models of granular materials, developed by various projects of the University of Twente (NL), the Netherlands eScience Center (NL), University of Newcastle (AU), and Hiroshima University (JP)."
+	"github/mateidavid/nanocall": {
+	"id": "github/mateidavid/nanocall",
+	"title": "github/mateidavid/nanocall",
+	"url": " https://rseng.github.io/software/repository/github/mateidavid/nanocall",
+	"content": "An Oxford Nanopore Basecaller"
 	},
-	"github/jmschrei/pomegranate": {
-	"id": "github/jmschrei/pomegranate",
-	"title": "github/jmschrei/pomegranate",
-	"url": " https://rseng.github.io/software/repository/github/jmschrei/pomegranate",
-	"content": "Fast, flexible and easy to use probabilistic modelling in Python."
+	"github/thom991/MSIQuickView": {
+	"id": "github/thom991/MSIQuickView",
+	"title": "github/thom991/MSIQuickView",
+	"url": " https://rseng.github.io/software/repository/github/thom991/MSIQuickView",
+	"content": "None"
 	},
-	"github/OpenMD/OpenMD": {
-	"id": "github/OpenMD/OpenMD",
-	"title": "github/OpenMD/OpenMD",
-	"url": " https://rseng.github.io/software/repository/github/OpenMD/OpenMD",
-	"content": "Molecular Dynamics in the Open"
+	"github/rudeboybert/forestecology": {
+	"id": "github/rudeboybert/forestecology",
+	"title": "github/rudeboybert/forestecology",
+	"url": " https://rseng.github.io/software/repository/github/rudeboybert/forestecology",
+	"content": "forestecology R package of Methods and Data for Forest Ecology Model Fitting and Assessment"
 	},
-	"github/ckarako/RRATtrap": {
-	"id": "github/ckarako/RRATtrap",
-	"title": "github/ckarako/RRATtrap",
-	"url": " https://rseng.github.io/software/repository/github/ckarako/RRATtrap",
-	"content": "A single-pulse sifting algorithm to identify RRATs and transients using output from Scott Ransom&#39;s PRESTO single_pulse_search.py . Code described and applied in Karako-Argaman et al. 2015: http://adsabs.harvard.edu/abs/2015ApJ...809...67K"
+	"github/jorisparet/partycls": {
+	"id": "github/jorisparet/partycls",
+	"title": "github/jorisparet/partycls",
+	"url": " https://rseng.github.io/software/repository/github/jorisparet/partycls",
+	"content": "Unsupervised learning of structure in systems of interacting particles."
 	},
-	"github/dvallesp/vortex-p": {
-	"id": "github/dvallesp/vortex-p",
-	"title": "github/dvallesp/vortex-p",
-	"url": " https://rseng.github.io/software/repository/github/dvallesp/vortex-p",
-	"content": "Implements a Helmholtz-Hodge decomposition and a Reynolds decomposition for the velocity field of general particle-based simulation outputs"
+	"github/panoptes-organization/panoptes": {
+	"id": "github/panoptes-organization/panoptes",
+	"title": "github/panoptes-organization/panoptes",
+	"url": " https://rseng.github.io/software/repository/github/panoptes-organization/panoptes",
+	"content": "Monitor computational workflows in real time"
 	},
-	"github/dvallesp/vortex": {
-	"id": "github/dvallesp/vortex",
-	"title": "github/dvallesp/vortex",
-	"url": " https://rseng.github.io/software/repository/github/dvallesp/vortex",
-	"content": "Implements Helmholtz-Hodge decomposition for an AMR velocity field"
+	"github/InfOmics/PanDelos-frags": {
+	"id": "github/InfOmics/PanDelos-frags",
+	"title": "github/InfOmics/PanDelos-frags",
+	"url": " https://rseng.github.io/software/repository/github/InfOmics/PanDelos-frags",
+	"content": "A version of PanDelos that discovers pangenomic content in fragmented genomes"
 	},
-	"github/dvallesp/asohf": {
-	"id": "github/dvallesp/asohf",
-	"title": "github/dvallesp/asohf",
-	"url": " https://rseng.github.io/software/repository/github/dvallesp/asohf",
-	"content": "Adaptive Spherical Overdensity Halo Finder (Planelles &amp; Quilis, 2010. A&amp;A, 519:A94; Vallés-Pérez, Planelles &amp; Quilis, 2022. A&amp;A in press)"
+	"github/seawander/DebrisDiskFM": {
+	"id": "github/seawander/DebrisDiskFM",
+	"title": "github/seawander/DebrisDiskFM",
+	"url": " https://rseng.github.io/software/repository/github/seawander/DebrisDiskFM",
+	"content": "Debris Disk Forward Modeling"
 	},
-	"github/low-sky/cprops": {
-	"id": "github/low-sky/cprops",
-	"title": "github/low-sky/cprops",
-	"url": " https://rseng.github.io/software/repository/github/low-sky/cprops",
-	"content": "Rosolowsky and Leroy (2006) Algorithm"
+	"github/seawander/centerRadon": {
+	"id": "github/seawander/centerRadon",
+	"title": "github/seawander/centerRadon",
+	"url": " https://rseng.github.io/software/repository/github/seawander/centerRadon",
+	"content": "Center determination code based on Radon Transform"
 	},
-	"github/astrosupriyo/pyTANSPEC": {
-	"id": "github/astrosupriyo/pyTANSPEC",
-	"title": "github/astrosupriyo/pyTANSPEC",
-	"url": " https://rseng.github.io/software/repository/github/astrosupriyo/pyTANSPEC",
-	"content": "Python tool for extracting 1D TANSPEC spectra from 2D image"
+	"github/cython/cython": {
+	"id": "github/cython/cython",
+	"title": "github/cython/cython",
+	"url": " https://rseng.github.io/software/repository/github/cython/cython",
+	"content": "The most widely used Python to C compiler"
 	},
-	"github/odlomax/spamcart-dev": {
-	"id": "github/odlomax/spamcart-dev",
-	"title": "github/odlomax/spamcart-dev",
-	"url": " https://rseng.github.io/software/repository/github/odlomax/spamcart-dev",
-	"content": "Development repository for SPAMCART radiative transfer code"
+	"github/qpv-research-group/solcore5": {
+	"id": "github/qpv-research-group/solcore5",
+	"title": "github/qpv-research-group/solcore5",
+	"url": " https://rseng.github.io/software/repository/github/qpv-research-group/solcore5",
+	"content": "A multi-scale, python-based library for the modelling of solar cells and semiconductor materials"
 	},
-	"github/muctadir/lama": {
-	"id": "github/muctadir/lama",
-	"title": "github/muctadir/lama",
-	"url": " https://rseng.github.io/software/repository/github/muctadir/lama",
-	"content": "LaMa, short for Labelling Machine, is an web application developed for aiding in thematic analysis of qualitative data. "
+	"github/storyofthewolf/ExoRT": {
+	"id": "github/storyofthewolf/ExoRT",
+	"title": "github/storyofthewolf/ExoRT",
+	"url": " https://rseng.github.io/software/repository/github/storyofthewolf/ExoRT",
+	"content": "radiative transfer code, designed for use with CESM/CAM"
 	},
-	"github/mikesmitka/truvot": {
-	"id": "github/mikesmitka/truvot",
-	"title": "github/mikesmitka/truvot",
-	"url": " https://rseng.github.io/software/repository/github/mikesmitka/truvot",
+	"github/storyofthewolf/ExoCAM": {
+	"id": "github/storyofthewolf/ExoCAM",
+	"title": "github/storyofthewolf/ExoCAM",
+	"url": " https://rseng.github.io/software/repository/github/storyofthewolf/ExoCAM",
 	"content": "None"
 	},
-	"github/nexml/nexml.java": {
-	"id": "github/nexml/nexml.java",
-	"title": "github/nexml/nexml.java",
-	"url": " https://rseng.github.io/software/repository/github/nexml/nexml.java",
-	"content": "Java API for NeXML."
-	},
-	"github/jczarnowski/DeepFactors": {
-	"id": "github/jczarnowski/DeepFactors",
-	"title": "github/jczarnowski/DeepFactors",
-	"url": " https://rseng.github.io/software/repository/github/jczarnowski/DeepFactors",
-	"content": "Real-Time Probabilistic Dense Monocular SLAM Using Compact Code Representation"
-	},
-	"github/MIAnalyzer/MIA": {
-	"id": "github/MIAnalyzer/MIA",
-	"title": "github/MIAnalyzer/MIA",
-	"url": " https://rseng.github.io/software/repository/github/MIAnalyzer/MIA",
-	"content": "Microsopic Image Analyzer (MIA)"
+	"github/karllark/DIRTY_dustrt": {
+	"id": "github/karllark/DIRTY_dustrt",
+	"title": "github/karllark/DIRTY_dustrt",
+	"url": " https://rseng.github.io/software/repository/github/karllark/DIRTY_dustrt",
+	"content": "DIRTY: 3D dust radiative transfer for dusty astrophysical sources"
 	},
-	"github/AlexMikes/AutoFunc": {
-	"id": "github/AlexMikes/AutoFunc",
-	"title": "github/AlexMikes/AutoFunc",
-	"url": " https://rseng.github.io/software/repository/github/AlexMikes/AutoFunc",
-	"content": "Data Mining for Automated Functional Representations"
+	"github/karllark/measure_extinction": {
+	"id": "github/karllark/measure_extinction",
+	"title": "github/karllark/measure_extinction",
+	"url": " https://rseng.github.io/software/repository/github/karllark/measure_extinction",
+	"content": "Measure interstellar dust extinction using pair method"
 	},
-	"github/athob/py-ananke": {
-	"id": "github/athob/py-ananke",
-	"title": "github/athob/py-ananke",
-	"url": " https://rseng.github.io/software/repository/github/athob/py-ananke",
-	"content": "Python pipeline to generate mock astrometric and photometric catalogs of synthetic stars derived from particle-based simulated star populations"
+	"github/karllark/dust_extinction": {
+	"id": "github/karllark/dust_extinction",
+	"title": "github/karllark/dust_extinction",
+	"url": " https://rseng.github.io/software/repository/github/karllark/dust_extinction",
+	"content": "Astronomical Dust Extinction"
 	},
-	"github/sdnjly/WSDL-AD": {
-	"id": "github/sdnjly/WSDL-AD",
-	"title": "github/sdnjly/WSDL-AD",
-	"url": " https://rseng.github.io/software/repository/github/sdnjly/WSDL-AD",
-	"content": "None"
+	"github/neherlab/nextalign": {
+	"id": "github/neherlab/nextalign",
+	"title": "github/neherlab/nextalign",
+	"url": " https://rseng.github.io/software/repository/github/neherlab/nextalign",
+	"content": "🧬 Viral genome reference alignment"
 	},
-	"github/kno10/python-kmedoids": {
-	"id": "github/kno10/python-kmedoids",
-	"title": "github/kno10/python-kmedoids",
-	"url": " https://rseng.github.io/software/repository/github/kno10/python-kmedoids",
-	"content": "Fast K-Medoids clustering in Python with FasterPAM"
+	"github/meixichen/SpatialGEV": {
+	"id": "github/meixichen/SpatialGEV",
+	"title": "github/meixichen/SpatialGEV",
+	"url": " https://rseng.github.io/software/repository/github/meixichen/SpatialGEV",
+	"content": "An efficient computational method for fitting spatial extreme value models"
 	},
-	"github/rust-bio/rust-bio-tools": {
-	"id": "github/rust-bio/rust-bio-tools",
-	"title": "github/rust-bio/rust-bio-tools",
-	"url": " https://rseng.github.io/software/repository/github/rust-bio/rust-bio-tools",
-	"content": "A set of command line utilities based on Rust-Bio."
+	"github/VirtualPlanetaryLaboratory/vplanet": {
+	"id": "github/VirtualPlanetaryLaboratory/vplanet",
+	"title": "github/VirtualPlanetaryLaboratory/vplanet",
+	"url": " https://rseng.github.io/software/repository/github/VirtualPlanetaryLaboratory/vplanet",
+	"content": "The Virtual Planet Simulator"
 	},
-	"github/mikessh/oncofuse": {
-	"id": "github/mikessh/oncofuse",
-	"title": "github/mikessh/oncofuse",
-	"url": " https://rseng.github.io/software/repository/github/mikessh/oncofuse",
-	"content": "Predicting oncogenic potential of gene fusions"
+	"github/VirtualPlanetaryLaboratory/atmos": {
+	"id": "github/VirtualPlanetaryLaboratory/atmos",
+	"title": "github/VirtualPlanetaryLaboratory/atmos",
+	"url": " https://rseng.github.io/software/repository/github/VirtualPlanetaryLaboratory/atmos",
+	"content": "None"
 	},
-	"github/mikessh/vdjtools": {
-	"id": "github/mikessh/vdjtools",
-	"title": "github/mikessh/vdjtools",
-	"url": " https://rseng.github.io/software/repository/github/mikessh/vdjtools",
-	"content": "Post-analysis of immune repertoire sequencing data"
+	"github/sczesla/PyAstronomy": {
+	"id": "github/sczesla/PyAstronomy",
+	"title": "github/sczesla/PyAstronomy",
+	"url": " https://rseng.github.io/software/repository/github/sczesla/PyAstronomy",
+	"content": "A collection of astronomy-related routines in Python"
 	},
-	"github/agorajs/agora-vpsc": {
-	"id": "github/agorajs/agora-vpsc",
-	"title": "github/agorajs/agora-vpsc",
-	"url": " https://rseng.github.io/software/repository/github/agorajs/agora-vpsc",
-	"content": "VPSC adapter for agora-framework"
+	"github/EvolBioInf/phylonium": {
+	"id": "github/EvolBioInf/phylonium",
+	"title": "github/EvolBioInf/phylonium",
+	"url": " https://rseng.github.io/software/repository/github/EvolBioInf/phylonium",
+	"content": "♥ Fast and Accurate Estimation of Evolutionary Distances"
 	},
-	"github/agorajs/agora-forbid": {
-	"id": "github/agorajs/agora-forbid",
-	"title": "github/agorajs/agora-forbid",
-	"url": " https://rseng.github.io/software/repository/github/agorajs/agora-forbid",
-	"content": "None"
+	"github/EvolBioInf/andi": {
+	"id": "github/EvolBioInf/andi",
+	"title": "github/EvolBioInf/andi",
+	"url": " https://rseng.github.io/software/repository/github/EvolBioInf/andi",
+	"content": "♥ Efficient Estimation of Evolutionary Distances"
 	},
-	"github/kusmic/pycosie": {
-	"id": "github/kusmic/pycosie",
-	"title": "github/kusmic/pycosie",
-	"url": " https://rseng.github.io/software/repository/github/kusmic/pycosie",
-	"content": "pycosie (pie cozy) is a complimentary suite of analyses software written in Python meant to be analyzed on Technicolor Dawn and quasarcosie outputs. It is the Pyhton derivative of ARCOSIE."
+	"github/timstaley/chimenea": {
+	"id": "github/timstaley/chimenea",
+	"title": "github/timstaley/chimenea",
+	"url": " https://rseng.github.io/software/repository/github/timstaley/chimenea",
+	"content": "Automated image-synthesis of multi-epoch radio-telescope data."
 	},
-	"github/ictr/covid19-outbreak-simulator": {
-	"id": "github/ictr/covid19-outbreak-simulator",
-	"title": "github/ictr/covid19-outbreak-simulator",
-	"url": " https://rseng.github.io/software/repository/github/ictr/covid19-outbreak-simulator",
-	"content": "Population-based Forward-time Simulator for the Outbreak of COVID-19"
+	"github/timstaley/voevent-parse": {
+	"id": "github/timstaley/voevent-parse",
+	"title": "github/timstaley/voevent-parse",
+	"url": " https://rseng.github.io/software/repository/github/timstaley/voevent-parse",
+	"content": "VOEvent parsing and manipulation routines built on lxml.objectify."
 	},
-	"github/kdeck/TTVFast": {
-	"id": "github/kdeck/TTVFast",
-	"title": "github/kdeck/TTVFast",
-	"url": " https://rseng.github.io/software/repository/github/kdeck/TTVFast",
-	"content": "TTVFast efficiently calculates transit times for n-planet systems and the corresponding radial velocities."
+	"github/timstaley/amisurvey": {
+	"id": "github/timstaley/amisurvey",
+	"title": "github/timstaley/amisurvey",
+	"url": " https://rseng.github.io/software/repository/github/timstaley/amisurvey",
+	"content": "End-to-end calibration and imaging of AMI-LA data."
 	},
-	"github/VasuLab/rgfrosh": {
-	"id": "github/VasuLab/rgfrosh",
-	"title": "github/VasuLab/rgfrosh",
-	"url": " https://rseng.github.io/software/repository/github/VasuLab/rgfrosh",
-	"content": "A frozen shock solver for ideal and real gas equations of state."
+	"github/ericagol/TTVFaster": {
+	"id": "github/ericagol/TTVFaster",
+	"title": "github/ericagol/TTVFaster",
+	"url": " https://rseng.github.io/software/repository/github/ericagol/TTVFaster",
+	"content": "First order eccentricity transit timing variations computed in Agol &amp; Deck (2015)"
 	},
-	"github/TingMAC/FrMLNet": {
-	"id": "github/TingMAC/FrMLNet",
-	"title": "github/TingMAC/FrMLNet",
-	"url": " https://rseng.github.io/software/repository/github/TingMAC/FrMLNet",
-	"content": "This is a implementation of training code of this paper “FrMLNet: Framelet-based Multi-level Network for Pansharpening”"
+	"github/Jonathanfreundlich/CuspCore": {
+	"id": "github/Jonathanfreundlich/CuspCore",
+	"title": "github/Jonathanfreundlich/CuspCore",
+	"url": " https://rseng.github.io/software/repository/github/Jonathanfreundlich/CuspCore",
+	"content": "A model for core formation in dark matter haloes and ultra-diffuse galaxies by outflow episodes"
 	},
-	"github/fcs-analysis/PyCorrFit": {
-	"id": "github/fcs-analysis/PyCorrFit",
-	"title": "github/fcs-analysis/PyCorrFit",
-	"url": " https://rseng.github.io/software/repository/github/fcs-analysis/PyCorrFit",
-	"content": "data analysis and fitting software for fluorescence correlation spectroscopy (FCS)"
+	"github/candebellavita/vkompth": {
+	"id": "github/candebellavita/vkompth",
+	"title": "github/candebellavita/vkompth",
+	"url": " https://rseng.github.io/software/repository/github/candebellavita/vkompth",
+	"content": "None"
 	},
-	"github/fcs-analysis/PyScanFCS": {
-	"id": "github/fcs-analysis/PyScanFCS",
-	"title": "github/fcs-analysis/PyScanFCS",
-	"url": " https://rseng.github.io/software/repository/github/fcs-analysis/PyScanFCS",
-	"content": "data evaluation in perpendicular line scanning FCS"
+	"github/Music-and-Culture-Technology-Lab/omnizart": {
+	"id": "github/Music-and-Culture-Technology-Lab/omnizart",
+	"title": "github/Music-and-Culture-Technology-Lab/omnizart",
+	"url": " https://rseng.github.io/software/repository/github/Music-and-Culture-Technology-Lab/omnizart",
+	"content": "Omniscient Mozart, being able to transcribe everything in the music, including vocal, drum, chord, beat, instruments, and more."
 	},
-	"github/dpalmasan/TRUNAJOD2.0": {
-	"id": "github/dpalmasan/TRUNAJOD2.0",
-	"title": "github/dpalmasan/TRUNAJOD2.0",
-	"url": " https://rseng.github.io/software/repository/github/dpalmasan/TRUNAJOD2.0",
-	"content": "An easy-to-use library to extract indices from texts."
+	"github/cmelab/flowerMD": {
+	"id": "github/cmelab/flowerMD",
+	"title": "github/cmelab/flowerMD",
+	"url": " https://rseng.github.io/software/repository/github/cmelab/flowerMD",
+	"content": "Flexible Library of Organic Workflows and Extensible Recipes for Molecular Dynamics."
 	},
-	"github/JoeMcEwen/FAST-PT": {
-	"id": "github/JoeMcEwen/FAST-PT",
-	"title": "github/JoeMcEwen/FAST-PT",
-	"url": " https://rseng.github.io/software/repository/github/JoeMcEwen/FAST-PT",
-	"content": "None"
+	"github/GalagaBits/JWST-FGS-Spelunker": {
+	"id": "github/GalagaBits/JWST-FGS-Spelunker",
+	"title": "github/GalagaBits/JWST-FGS-Spelunker",
+	"url": " https://rseng.github.io/software/repository/github/GalagaBits/JWST-FGS-Spelunker",
+	"content": "JWST FGS Spelunker is a package that assists and finds technical anomalies from the JWST and stellar properties from guidestars."
 	},
-	"github/bwkeller/PASTA": {
-	"id": "github/bwkeller/PASTA",
-	"title": "github/bwkeller/PASTA",
-	"url": " https://rseng.github.io/software/repository/github/bwkeller/PASTA",
-	"content": "Python Astronomical Stacking Tool Array"
+	"github/DamynChipman/EllipticForest": {
+	"id": "github/DamynChipman/EllipticForest",
+	"title": "github/DamynChipman/EllipticForest",
+	"url": " https://rseng.github.io/software/repository/github/DamynChipman/EllipticForest",
+	"content": "A Direct Solver for Elliptic Partial Differential Equations on a Forest of Quadtree Meshes"
 	},
-	"github/lucabaldini/ixpeobssim": {
-	"id": "github/lucabaldini/ixpeobssim",
-	"title": "github/lucabaldini/ixpeobssim",
-	"url": " https://rseng.github.io/software/repository/github/lucabaldini/ixpeobssim",
-	"content": "Simulation and analysis framework for the Imaging X-ray Polarimetry Explorer"
+	"github/Keck-DataReductionPipelines/KcwiDRP": {
+	"id": "github/Keck-DataReductionPipelines/KcwiDRP",
+	"title": "github/Keck-DataReductionPipelines/KcwiDRP",
+	"url": " https://rseng.github.io/software/repository/github/Keck-DataReductionPipelines/KcwiDRP",
+	"content": "KCWI data reduction pipeline. Developers: Don Neill, Matt Matuszewski, Chris Martin (Caltech)"
 	},
-	"github/pwry/lextes": {
-	"id": "github/pwry/lextes",
-	"title": "github/pwry/lextes",
-	"url": " https://rseng.github.io/software/repository/github/pwry/lextes",
-	"content": "PDF link scraper/tester for Schroedinger&#39;s Code paper"
+	"github/Keck-DataReductionPipelines/KCWI_DRP": {
+	"id": "github/Keck-DataReductionPipelines/KCWI_DRP",
+	"title": "github/Keck-DataReductionPipelines/KCWI_DRP",
+	"url": " https://rseng.github.io/software/repository/github/Keck-DataReductionPipelines/KCWI_DRP",
+	"content": "KCWI python DRP"
 	},
-	"github/mlhutchins/LWPC": {
-	"id": "github/mlhutchins/LWPC",
-	"title": "github/mlhutchins/LWPC",
-	"url": " https://rseng.github.io/software/repository/github/mlhutchins/LWPC",
-	"content": "Version 2.1 of the U.S. Navy Long Wave Propagation Capability code with alterations for running as a MATLAB function. The altered version has most warning and error reporting removed."
+	"github/cdominik/optool": {
+	"id": "github/cdominik/optool",
+	"title": "github/cdominik/optool",
+	"url": " https://rseng.github.io/software/repository/github/cdominik/optool",
+	"content": "Command-line driven tool to create dust opacities"
 	},
-	"github/fforster/delight": {
-	"id": "github/fforster/delight",
-	"title": "github/fforster/delight",
-	"url": " https://rseng.github.io/software/repository/github/fforster/delight",
-	"content": "Deep Learning Identification of Galaxy Hosts in Transients"
+	"github/gsuissa/hardCORE": {
+	"id": "github/gsuissa/hardCORE",
+	"title": "github/gsuissa/hardCORE",
+	"url": " https://rseng.github.io/software/repository/github/gsuissa/hardCORE",
+	"content": "None"
 	},
-	"github/cire-thk/BifacialSimu": {
-	"id": "github/cire-thk/BifacialSimu",
-	"title": "github/cire-thk/BifacialSimu",
-	"url": " https://rseng.github.io/software/repository/github/cire-thk/BifacialSimu",
-	"content": "Simulation of bifacial PV"
+	"github/ridgelab/ExtRampOnline": {
+	"id": "github/ridgelab/ExtRampOnline",
+	"title": "github/ridgelab/ExtRampOnline",
+	"url": " https://rseng.github.io/software/repository/github/ridgelab/ExtRampOnline",
+	"content": "None"
 	},
-	"github/justincfeng/PoMiN": {
-	"id": "github/justincfeng/PoMiN",
-	"title": "github/justincfeng/PoMiN",
-	"url": " https://rseng.github.io/software/repository/github/justincfeng/PoMiN",
-	"content": "PoMiN is a Post-Minkowskian N-Body Solver"
+	"github/ridgelab/rampAtlas": {
+	"id": "github/ridgelab/rampAtlas",
+	"title": "github/ridgelab/rampAtlas",
+	"url": " https://rseng.github.io/software/repository/github/ridgelab/rampAtlas",
+	"content": "Code used to retrieve, organize, and analyze data for the Ramp Atlas"
 	},
-	"github/seamplex/feenox": {
-	"id": "github/seamplex/feenox",
-	"title": "github/seamplex/feenox",
-	"url": " https://rseng.github.io/software/repository/github/seamplex/feenox",
-	"content": "Cloud-first free no-fee no-X uniX-like finite-element(ish) computational engineering tool"
+	"github/daissi/thesias": {
+	"id": "github/daissi/thesias",
+	"title": "github/daissi/thesias",
+	"url": " https://rseng.github.io/software/repository/github/daissi/thesias",
+	"content": "THESIAS: Testing Haplotype Effects In Association Studies"
 	},
-	"github/rezeebe/orbitN": {
-	"id": "github/rezeebe/orbitN",
-	"title": "github/rezeebe/orbitN",
-	"url": " https://rseng.github.io/software/repository/github/rezeebe/orbitN",
-	"content": "Symplectic integrator for near-Keplerian planetary systems"
+	"github/tkchafin/autostreamtree": {
+	"id": "github/tkchafin/autostreamtree",
+	"title": "github/tkchafin/autostreamtree",
+	"url": " https://rseng.github.io/software/repository/github/tkchafin/autostreamtree",
+	"content": "Stream trees for SNP datasets"
 	},
-	"github/zhoulinumass/ML-wPBE": {
-	"id": "github/zhoulinumass/ML-wPBE",
-	"title": "github/zhoulinumass/ML-wPBE",
-	"url": " https://rseng.github.io/software/repository/github/zhoulinumass/ML-wPBE",
+	"github/putonti/virmine": {
+	"id": "github/putonti/virmine",
+	"title": "github/putonti/virmine",
+	"url": " https://rseng.github.io/software/repository/github/putonti/virmine",
 	"content": "None"
 	},
-	"github/CLARIAH/grlc": {
-	"id": "github/CLARIAH/grlc",
-	"title": "github/CLARIAH/grlc",
-	"url": " https://rseng.github.io/software/repository/github/CLARIAH/grlc",
-	"content": "grlc builds Web APIs using shared SPARQL queries"
+	"github/Pithikos/C-Thread-Pool": {
+	"id": "github/Pithikos/C-Thread-Pool",
+	"title": "github/Pithikos/C-Thread-Pool",
+	"url": " https://rseng.github.io/software/repository/github/Pithikos/C-Thread-Pool",
+	"content": "A minimal but powerful thread pool in ANSI C"
 	},
-	"github/Yingjie4Science/SDGdetector": {
-	"id": "github/Yingjie4Science/SDGdetector",
-	"title": "github/Yingjie4Science/SDGdetector",
-	"url": " https://rseng.github.io/software/repository/github/Yingjie4Science/SDGdetector",
-	"content": "A novel R package that can identify and visualize 17 Sustainable Development Goals and associated 169 Targets in text"
+	"github/jupyter/notebook": {
+	"id": "github/jupyter/notebook",
+	"title": "github/jupyter/notebook",
+	"url": " https://rseng.github.io/software/repository/github/jupyter/notebook",
+	"content": "Jupyter Interactive Notebook"
 	},
-	"github/EISy-as-Py/hardy": {
-	"id": "github/EISy-as-Py/hardy",
-	"title": "github/EISy-as-Py/hardy",
-	"url": " https://rseng.github.io/software/repository/github/EISy-as-Py/hardy",
-	"content": "Handling Arbitrary Recognition of Data! y not?"
+	"github/dipangwvu/SPEGID": {
+	"id": "github/dipangwvu/SPEGID",
+	"title": "github/dipangwvu/SPEGID",
+	"url": " https://rseng.github.io/software/repository/github/dipangwvu/SPEGID",
+	"content": "Single-pulse Search Approach"
 	},
-	"github/nickrodd/HDMSpectra": {
-	"id": "github/nickrodd/HDMSpectra",
-	"title": "github/nickrodd/HDMSpectra",
-	"url": " https://rseng.github.io/software/repository/github/nickrodd/HDMSpectra",
-	"content": "Dark Matter Spectra from the Electroweak to the Planck Scale"
+	"github/rsnemmen/BCES": {
+	"id": "github/rsnemmen/BCES",
+	"title": "github/rsnemmen/BCES",
+	"url": " https://rseng.github.io/software/repository/github/rsnemmen/BCES",
+	"content": "Python module for performing linear regression for data with measurement errors and intrinsic scatter"
 	},
-	"github/ronnyerrmann/HiFLEx": {
-	"id": "github/ronnyerrmann/HiFLEx",
-	"title": "github/ronnyerrmann/HiFLEx",
-	"url": " https://rseng.github.io/software/repository/github/ronnyerrmann/HiFLEx",
-	"content": "Pipeline to reduce echelle data (taken with a single or bifurcated fiber input)"
+	"github/SeamusClarke/FragMent": {
+	"id": "github/SeamusClarke/FragMent",
+	"title": "github/SeamusClarke/FragMent",
+	"url": " https://rseng.github.io/software/repository/github/SeamusClarke/FragMent",
+	"content": "A collection of fragmentation techniques for studying filaments"
 	},
-	"github/iopenshell/ezSpectrum": {
-	"id": "github/iopenshell/ezSpectrum",
-	"title": "github/iopenshell/ezSpectrum",
-	"url": " https://rseng.github.io/software/repository/github/iopenshell/ezSpectrum",
-	"content": "None"
+	"github/SeamusClarke/BTS": {
+	"id": "github/SeamusClarke/BTS",
+	"title": "github/SeamusClarke/BTS",
+	"url": " https://rseng.github.io/software/repository/github/SeamusClarke/BTS",
+	"content": "Behind The Spectrum (BTS) fitter "
 	},
-	"github/rksyouyou/SASOM-analysis": {
-	"id": "github/rksyouyou/SASOM-analysis",
-	"title": "github/rksyouyou/SASOM-analysis",
-	"url": " https://rseng.github.io/software/repository/github/rksyouyou/SASOM-analysis",
-	"content": "code and data for real data analysis in SASOM paper"
+	"github/SoFiA-Admin/SoFiA-2": {
+	"id": "github/SoFiA-Admin/SoFiA-2",
+	"title": "github/SoFiA-Admin/SoFiA-2",
+	"url": " https://rseng.github.io/software/repository/github/SoFiA-Admin/SoFiA-2",
+	"content": "Version 2 of the HI Source Finding Application (SoFiA)"
 	},
-	"github/margudo/LSSGALPY": {
-	"id": "github/margudo/LSSGALPY",
-	"title": "github/margudo/LSSGALPY",
-	"url": " https://rseng.github.io/software/repository/github/margudo/LSSGALPY",
-	"content": "Python tool for the interactive visualization of the large-scale environment around galaxies on the 3D space "
+	"github/mwalmsley/zoobot": {
+	"id": "github/mwalmsley/zoobot",
+	"title": "github/mwalmsley/zoobot",
+	"url": " https://rseng.github.io/software/repository/github/mwalmsley/zoobot",
+	"content": "Classifies galaxy morphology with Bayesian CNN"
 	},
-	"github/wf4ever/astrotaverna": {
-	"id": "github/wf4ever/astrotaverna",
-	"title": "github/wf4ever/astrotaverna",
-	"url": " https://rseng.github.io/software/repository/github/wf4ever/astrotaverna",
-	"content": "Astronomy plugins for Taverna Workbench"
+	"github/mneeleman/qubefit": {
+	"id": "github/mneeleman/qubefit",
+	"title": "github/mneeleman/qubefit",
+	"url": " https://rseng.github.io/software/repository/github/mneeleman/qubefit",
+	"content": "None"
 	},
-	"github/qiime2/q2-vsearch": {
-	"id": "github/qiime2/q2-vsearch",
-	"title": "github/qiime2/q2-vsearch",
-	"url": " https://rseng.github.io/software/repository/github/qiime2/q2-vsearch",
-	"content": "vsearch plugin for QIIME 2"
+	"github/dipol-uf/DIPOL-UF": {
+	"id": "github/dipol-uf/DIPOL-UF",
+	"title": "github/dipol-uf/DIPOL-UF",
+	"url": " https://rseng.github.io/software/repository/github/dipol-uf/DIPOL-UF",
+	"content": "DIPOL-3"
 	},
-	"github/vidarsko/ComFiT": {
-	"id": "github/vidarsko/ComFiT",
-	"title": "github/vidarsko/ComFiT",
-	"url": " https://rseng.github.io/software/repository/github/vidarsko/ComFiT",
-	"content": "A python library for simulating field theories with topological defects"
+	"github/surhudm/aum": {
+	"id": "github/surhudm/aum",
+	"title": "github/surhudm/aum",
+	"url": " https://rseng.github.io/software/repository/github/surhudm/aum",
+	"content": "aum"
 	},
-	"github/cbib/decontaminator": {
-	"id": "github/cbib/decontaminator",
-	"title": "github/cbib/decontaminator",
-	"url": " https://rseng.github.io/software/repository/github/cbib/decontaminator",
-	"content": "deep learning contamination filtering tool"
+	"github/surhudm/savitzky_golay_with_errors": {
+	"id": "github/surhudm/savitzky_golay_with_errors",
+	"title": "github/surhudm/savitzky_golay_with_errors",
+	"url": " https://rseng.github.io/software/repository/github/surhudm/savitzky_golay_with_errors",
+	"content": "Improving the Savitzky-Golay filtering in the presence of noisy data"
+	},
+	"github/liulizhi1996/HPODNets": {
+	"id": "github/liulizhi1996/HPODNets",
+	"title": "github/liulizhi1996/HPODNets",
+	"url": " https://rseng.github.io/software/repository/github/liulizhi1996/HPODNets",
+	"content": "HPODNets: deep graph convolutional networks for predicting human protein-phenotype associations"
 	},
 	"github/jiahecui/SenAOReFoc": {
 	"id": "github/jiahecui/SenAOReFoc",
@@ -33009,4391 +33015,4475 @@
 	"url": " https://rseng.github.io/software/repository/github/jiahecui/SenAOReFoc",
 	"content": "A closed-loop sensorbased adaptive optics and remote focusing control software that works with a deformable mirror and a Shack-Hartmann wavefront sensor."
 	},
-	"github/spedas/pyspedas": {
-	"id": "github/spedas/pyspedas",
-	"title": "github/spedas/pyspedas",
-	"url": " https://rseng.github.io/software/repository/github/spedas/pyspedas",
-	"content": "Python-based Space Physics Environment Data Analysis Software"
-	},
-	"github/McMahonCosmologyGroup/holosim-ml": {
-	"id": "github/McMahonCosmologyGroup/holosim-ml",
-	"title": "github/McMahonCosmologyGroup/holosim-ml",
-	"url": " https://rseng.github.io/software/repository/github/McMahonCosmologyGroup/holosim-ml",
-	"content": "machine learning applied to the efficient analysis of radio holography measurements of complex optical systems"
-	},
-	"github/biomedia-mira/blast-ct": {
-	"id": "github/biomedia-mira/blast-ct",
-	"title": "github/biomedia-mira/blast-ct",
-	"url": " https://rseng.github.io/software/repository/github/biomedia-mira/blast-ct",
-	"content": "Brain Lesion Analysis and Segmentation Tool for Computed Tomography"
+	"github/nvalimak/fsm-lite": {
+	"id": "github/nvalimak/fsm-lite",
+	"title": "github/nvalimak/fsm-lite",
+	"url": " https://rseng.github.io/software/repository/github/nvalimak/fsm-lite",
+	"content": "frequency-based string mining (lite)"
 	},
-	"github/biomedia-mira/deepscm": {
-	"id": "github/biomedia-mira/deepscm",
-	"title": "github/biomedia-mira/deepscm",
-	"url": " https://rseng.github.io/software/repository/github/biomedia-mira/deepscm",
-	"content": "Repository for Deep Structural Causal Models for Tractable Counterfactual Inference"
+	"github/ngbusca/QuasarNET": {
+	"id": "github/ngbusca/QuasarNET",
+	"title": "github/ngbusca/QuasarNET",
+	"url": " https://rseng.github.io/software/repository/github/ngbusca/QuasarNET",
+	"content": "None"
 	},
-	"github/biomedia-mira/drop2": {
-	"id": "github/biomedia-mira/drop2",
-	"title": "github/biomedia-mira/drop2",
-	"url": " https://rseng.github.io/software/repository/github/biomedia-mira/drop2",
-	"content": "drop2 - intensity-based image registration"
+	"github/kavir1698/EvoDynamics.jl": {
+	"id": "github/kavir1698/EvoDynamics.jl",
+	"title": "github/kavir1698/EvoDynamics.jl",
+	"url": " https://rseng.github.io/software/repository/github/kavir1698/EvoDynamics.jl",
+	"content": "Simulation of eco-evolutionary dynamics on multi-trait networks"
 	},
-	"github/biomedia-mira/masf": {
-	"id": "github/biomedia-mira/masf",
-	"title": "github/biomedia-mira/masf",
-	"url": " https://rseng.github.io/software/repository/github/biomedia-mira/masf",
-	"content": "Domain Generalization via Model-Agnostic Learning of Semantic Features"
+	"github/dh4gan/grapus": {
+	"id": "github/dh4gan/grapus",
+	"title": "github/dh4gan/grapus",
+	"url": " https://rseng.github.io/software/repository/github/dh4gan/grapus",
+	"content": "Population synthesis of self-gravitating disc fragmentation and tidal downsizing in protostellar discs"
 	},
-	"github/biomedia-mira/istn": {
-	"id": "github/biomedia-mira/istn",
-	"title": "github/biomedia-mira/istn",
-	"url": " https://rseng.github.io/software/repository/github/biomedia-mira/istn",
-	"content": "Image-and-Spatial Transformer Networks"
+	"github/dh4gan/taktent": {
+	"id": "github/dh4gan/taktent",
+	"title": "github/dh4gan/taktent",
+	"url": " https://rseng.github.io/software/repository/github/dh4gan/taktent",
+	"content": "A Python framework for agent-based simulations of (radio) SETI observations"
 	},
-	"github/DavidT3/DAXA": {
-	"id": "github/DavidT3/DAXA",
-	"title": "github/DavidT3/DAXA",
-	"url": " https://rseng.github.io/software/repository/github/DavidT3/DAXA",
-	"content": "Democratising Archival X-ray Astronomy (DAXA) is an easy-to-use Python module for downloading multi-mission X-ray telescope data and processing it into usable archives. Users can acquire entire archives, or filter observations based on ID/positions/time. Supports XMM; partial support eROSITA, Chandra, NuSTAR, Swift, Suzaku, ASCA, ROSAT, INTEGRAL"
+	"github/dh4gan/oberon": {
+	"id": "github/dh4gan/oberon",
+	"title": "github/dh4gan/oberon",
+	"url": " https://rseng.github.io/software/repository/github/dh4gan/oberon",
+	"content": "This C++ code models the climate of Earthlike planets under the effects of an arbitrary number and arrangement of other bodies, such as stars, planets and moons."
 	},
-	"github/DavidT3/XGA": {
-	"id": "github/DavidT3/XGA",
-	"title": "github/DavidT3/XGA",
-	"url": " https://rseng.github.io/software/repository/github/DavidT3/XGA",
-	"content": "X-ray: Generate and Analyse is a module designed to make the analysis of XMM observations simple and efficient. It provides an interface with SAS for the creation of XMM data products, as well as a way to easily perform fits (scalable for multiple observations) and retrieve information about an object, all within a Python package. "
+	"github/dh4gan/tache": {
+	"id": "github/dh4gan/tache",
+	"title": "github/dh4gan/tache",
+	"url": " https://rseng.github.io/software/repository/github/dh4gan/tache",
+	"content": "TensoriAl Classification of Hydrodynamic Elements"
 	},
-	"github/CGAL/cgal": {
-	"id": "github/CGAL/cgal",
-	"title": "github/CGAL/cgal",
-	"url": " https://rseng.github.io/software/repository/github/CGAL/cgal",
-	"content": "The public CGAL repository, see the README below"
+	"github/2decomp-fft/2decomp-fft": {
+	"id": "github/2decomp-fft/2decomp-fft",
+	"title": "github/2decomp-fft/2decomp-fft",
+	"url": " https://rseng.github.io/software/repository/github/2decomp-fft/2decomp-fft",
+	"content": "The 2DECOMP&amp;FFT library provides access to a slabs and pencil decompositions as well as FFTs. "
 	},
-	"github/MetaCell/scicrunch-antibody-registry": {
-	"id": "github/MetaCell/scicrunch-antibody-registry",
-	"title": "github/MetaCell/scicrunch-antibody-registry",
-	"url": " https://rseng.github.io/software/repository/github/MetaCell/scicrunch-antibody-registry",
-	"content": "A repo for the SciCrunch antibody registry portal "
+	"github/kjschmidlab/GGoutlieR": {
+	"id": "github/kjschmidlab/GGoutlieR",
+	"title": "github/kjschmidlab/GGoutlieR",
+	"url": " https://rseng.github.io/software/repository/github/kjschmidlab/GGoutlieR",
+	"content": "None"
 	},
-	"github/pysal/spopt": {
-	"id": "github/pysal/spopt",
-	"title": "github/pysal/spopt",
-	"url": " https://rseng.github.io/software/repository/github/pysal/spopt",
-	"content": "Spatial Optimization"
+	"github/DKMS/hapl-o-Mat_WinBin": {
+	"id": "github/DKMS/hapl-o-Mat_WinBin",
+	"title": "github/DKMS/hapl-o-Mat_WinBin",
+	"url": " https://rseng.github.io/software/repository/github/DKMS/hapl-o-Mat_WinBin",
+	"content": "Windows binary version of the Graphical User Interface to Hapl-o-Mat. Includes also a binary version of the command line interface."
 	},
-	"github/pysal/pysal": {
-	"id": "github/pysal/pysal",
-	"title": "github/pysal/pysal",
-	"url": " https://rseng.github.io/software/repository/github/pysal/pysal",
-	"content": "PySAL: Python Spatial Analysis Library Meta-Package"
+	"github/geodynamics/Rayleigh": {
+	"id": "github/geodynamics/Rayleigh",
+	"title": "github/geodynamics/Rayleigh",
+	"url": " https://rseng.github.io/software/repository/github/geodynamics/Rayleigh",
+	"content": "Rayleigh: Pseudo-spectral MHD"
 	},
-	"github/pysal/spaghetti": {
-	"id": "github/pysal/spaghetti",
-	"title": "github/pysal/spaghetti",
-	"url": " https://rseng.github.io/software/repository/github/pysal/spaghetti",
-	"content": "SPAtial GrapHs: nETworks, Topology, &amp; Inference"
+	"github/geodynamics/burnman": {
+	"id": "github/geodynamics/burnman",
+	"title": "github/geodynamics/burnman",
+	"url": " https://rseng.github.io/software/repository/github/geodynamics/burnman",
+	"content": "BurnMan is a library for modeling mantle thermodynamics and thermoelasticity constrained by mineral physics experiments."
 	},
-	"github/mroosmalen/nanosv": {
-	"id": "github/mroosmalen/nanosv",
-	"title": "github/mroosmalen/nanosv",
-	"url": " https://rseng.github.io/software/repository/github/mroosmalen/nanosv",
-	"content": "SV caller for nanopore data"
+	"github/scottgigante/picopore": {
+	"id": "github/scottgigante/picopore",
+	"title": "github/scottgigante/picopore",
+	"url": " https://rseng.github.io/software/repository/github/scottgigante/picopore",
+	"content": "A tool to reduce the size of Oxford Nanopore Technologies&#39; datasets without losing information"
 	},
-	"github/tanhevg/GpABC.jl": {
-	"id": "github/tanhevg/GpABC.jl",
-	"title": "github/tanhevg/GpABC.jl",
-	"url": " https://rseng.github.io/software/repository/github/tanhevg/GpABC.jl",
+	"github/LeandroOrdonez/explora-vr-dash-client": {
+	"id": "github/LeandroOrdonez/explora-vr-dash-client",
+	"title": "github/LeandroOrdonez/explora-vr-dash-client",
+	"url": " https://rseng.github.io/software/repository/github/LeandroOrdonez/explora-vr-dash-client",
 	"content": "None"
 	},
-	"github/philbull/RadioFisher": {
-	"id": "github/philbull/RadioFisher",
-	"title": "github/philbull/RadioFisher",
-	"url": " https://rseng.github.io/software/repository/github/philbull/RadioFisher",
-	"content": "Fisher forecasting for 21cm intensity mapping and spectroscopic galaxy surveys"
+	"github/egpbos/barcode": {
+	"id": "github/egpbos/barcode",
+	"title": "github/egpbos/barcode",
+	"url": " https://rseng.github.io/software/repository/github/egpbos/barcode",
+	"content": "Bayesian reconstruction of cosmic density fields"
 	},
-	"github/gtayana/CVRMS": {
-	"id": "github/gtayana/CVRMS",
-	"title": "github/gtayana/CVRMS",
-	"url": " https://rseng.github.io/software/repository/github/gtayana/CVRMS",
-	"content": "Marker selection for genome-wide prediction"
+	"github/taranu/AllStarFit": {
+	"id": "github/taranu/AllStarFit",
+	"title": "github/taranu/AllStarFit",
+	"url": " https://rseng.github.io/software/repository/github/taranu/AllStarFit",
+	"content": "Experimental R package for source detection, PSF and multi-component galaxy fitting"
 	},
-	"github/OpenMDAO/dymos": {
-	"id": "github/OpenMDAO/dymos",
-	"title": "github/OpenMDAO/dymos",
-	"url": " https://rseng.github.io/software/repository/github/OpenMDAO/dymos",
-	"content": "Open Source Optimization of Dynamic Multidisciplinary Systems"
+	"github/mrempel/geohexviz": {
+	"id": "github/mrempel/geohexviz",
+	"title": "github/mrempel/geohexviz",
+	"url": " https://rseng.github.io/software/repository/github/mrempel/geohexviz",
+	"content": "GeoHexViz - generating publication-quality geospatical visualization of hexagonally binned data"
 	},
-	"github/kimberg/voxbo": {
-	"id": "github/kimberg/voxbo",
-	"title": "github/kimberg/voxbo",
-	"url": " https://rseng.github.io/software/repository/github/kimberg/voxbo",
-	"content": "free software for brain image analysis"
+	"github/equipeGST/RiboDoc": {
+	"id": "github/equipeGST/RiboDoc",
+	"title": "github/equipeGST/RiboDoc",
+	"url": " https://rseng.github.io/software/repository/github/equipeGST/RiboDoc",
+	"content": "Docker based tool for ribosome profiling (RiboSeq) analysis"
+	},
+	"github/varlociraptor/varlociraptorhub.io": {
+	"id": "github/varlociraptor/varlociraptorhub.io",
+	"title": "github/varlociraptor/varlociraptorhub.io",
+	"url": " https://rseng.github.io/software/repository/github/varlociraptor/varlociraptorhub.io",
+	"content": "flexible, arbitrary-scenario, uncertainty-aware variant calling with parameter free filtration via FDR control."
 	},
-	"github/desResLab/LINFA": {
-	"id": "github/desResLab/LINFA",
-	"title": "github/desResLab/LINFA",
-	"url": " https://rseng.github.io/software/repository/github/desResLab/LINFA",
-	"content": "A Python library for variational inference with normalizing flow and annealing"
+	"github/UK-Digital-Heart-Project/4Dsurvival": {
+	"id": "github/UK-Digital-Heart-Project/4Dsurvival",
+	"title": "github/UK-Digital-Heart-Project/4Dsurvival",
+	"url": " https://rseng.github.io/software/repository/github/UK-Digital-Heart-Project/4Dsurvival",
+	"content": "Deep learning cardiac motion analysis for survival prediction"
 	},
-	"github/ERA-URBAN/fm128_radar": {
-	"id": "github/ERA-URBAN/fm128_radar",
-	"title": "github/ERA-URBAN/fm128_radar",
-	"url": " https://rseng.github.io/software/repository/github/ERA-URBAN/fm128_radar",
+	"github/UK-Digital-Heart-Project/4Dsegment": {
+	"id": "github/UK-Digital-Heart-Project/4Dsegment",
+	"title": "github/UK-Digital-Heart-Project/4Dsegment",
+	"url": " https://rseng.github.io/software/repository/github/UK-Digital-Heart-Project/4Dsegment",
 	"content": "None"
 	},
-	"github/ERA-URBAN/netcdf2littler": {
-	"id": "github/ERA-URBAN/netcdf2littler",
-	"title": "github/ERA-URBAN/netcdf2littler",
-	"url": " https://rseng.github.io/software/repository/github/ERA-URBAN/netcdf2littler",
-	"content": "An application to convert NetCDF files to the Little-R format. The Little-R format is the accepted input format for the WRF data assimilation system (WRFDA) preprocessor (obsproc). Currently only the conversion of synoptical weather stations are supported by this application."
-	},
-	"github/vals/umis": {
-	"id": "github/vals/umis",
-	"title": "github/vals/umis",
-	"url": " https://rseng.github.io/software/repository/github/vals/umis",
-	"content": "Tools for processing UMI RNA-tag data"
+	"github/chandra-marx/marxs": {
+	"id": "github/chandra-marx/marxs",
+	"title": "github/chandra-marx/marxs",
+	"url": " https://rseng.github.io/software/repository/github/chandra-marx/marxs",
+	"content": "Multi-Architecture-Raytrace-Xraymission-Simulator"
 	},
-	"github/Rocsg/FijiRelax": {
-	"id": "github/Rocsg/FijiRelax",
-	"title": "github/Rocsg/FijiRelax",
-	"url": " https://rseng.github.io/software/repository/github/Rocsg/FijiRelax",
-	"content": "FijiRelax: 3D+t multi-echo spin-echo sequences MRI analysis"
+	"github/ahcm/ffindex": {
+	"id": "github/ahcm/ffindex",
+	"title": "github/ahcm/ffindex",
+	"url": " https://rseng.github.io/software/repository/github/ahcm/ffindex",
+	"content": "simple index/database for huge amounts of small files"
 	},
-	"github/MichaelCretignier/Rassine_public": {
-	"id": "github/MichaelCretignier/Rassine_public",
-	"title": "github/MichaelCretignier/Rassine_public",
-	"url": " https://rseng.github.io/software/repository/github/MichaelCretignier/Rassine_public",
-	"content": "RASSINE is a code using alpha shape to normalise 1d spectra"
+	"github/rkingsbury/pyEQL": {
+	"id": "github/rkingsbury/pyEQL",
+	"title": "github/rkingsbury/pyEQL",
+	"url": " https://rseng.github.io/software/repository/github/rkingsbury/pyEQL",
+	"content": "A Python library for solution chemistry"
 	},
-	"github/NorwegianVeterinaryInstitute/ALPPACA": {
-	"id": "github/NorwegianVeterinaryInstitute/ALPPACA",
-	"title": "github/NorwegianVeterinaryInstitute/ALPPACA",
-	"url": " https://rseng.github.io/software/repository/github/NorwegianVeterinaryInstitute/ALPPACA",
-	"content": "A tooL for Prokaryotic Phylogeny And Clustering Analysis"
+	"github/cov-ert/gofasta": {
+	"id": "github/cov-ert/gofasta",
+	"title": "github/cov-ert/gofasta",
+	"url": " https://rseng.github.io/software/repository/github/cov-ert/gofasta",
+	"content": "provides functions for working on alignments in fasta format."
 	},
-	"github/bbercovici/SBGAT": {
-	"id": "github/bbercovici/SBGAT",
-	"title": "github/bbercovici/SBGAT",
-	"url": " https://rseng.github.io/software/repository/github/bbercovici/SBGAT",
-	"content": "The implementation of the Small Bodies Geophysical Analysis Tool (SBGAT)"
+	"github/etal/cnvkit": {
+	"id": "github/etal/cnvkit",
+	"title": "github/etal/cnvkit",
+	"url": " https://rseng.github.io/software/repository/github/etal/cnvkit",
+	"content": "a command-line toolkit and Python library for detecting copy number variants and alterations genome-wide from high-throughput sequencing."
 	},
-	"github/rae-holcomb/SpinSpotter": {
-	"id": "github/rae-holcomb/SpinSpotter",
-	"title": "github/rae-holcomb/SpinSpotter",
-	"url": " https://rseng.github.io/software/repository/github/rae-holcomb/SpinSpotter",
-	"content": "An automated algorithm to calculate stellar rotation periods from high-cadence photometry."
+	"github/IMS-MAXIMS/openMAXIMS": {
+	"id": "github/IMS-MAXIMS/openMAXIMS",
+	"title": "github/IMS-MAXIMS/openMAXIMS",
+	"url": " https://rseng.github.io/software/repository/github/IMS-MAXIMS/openMAXIMS",
+	"content": "Home of the openMAXIMS PAS and EPR"
 	},
-	"github/seamusclarke/rjplots": {
-	"id": "github/seamusclarke/rjplots",
-	"title": "github/seamusclarke/rjplots",
-	"url": " https://rseng.github.io/software/repository/github/seamusclarke/rjplots",
-	"content": "A Python package allowing for the automated and objective classification of 2D structures using a moments of inertia based method. This method is a further development of J-plots (https://github.com/SJaffa/Jplots)"
+	"github/RemieJanssen/phylox": {
+	"id": "github/RemieJanssen/phylox",
+	"title": "github/RemieJanssen/phylox",
+	"url": " https://rseng.github.io/software/repository/github/RemieJanssen/phylox",
+	"content": "A python package with tools for constructing, manipulating, and analyzing phylogenetic networks."
 	},
-	"github/NLESC-JCER/QMCblip": {
-	"id": "github/NLESC-JCER/QMCblip",
-	"title": "github/NLESC-JCER/QMCblip",
-	"url": " https://rseng.github.io/software/repository/github/NLESC-JCER/QMCblip",
-	"content": "None"
+	"github/micahvista/MAMnet": {
+	"id": "github/micahvista/MAMnet",
+	"title": "github/micahvista/MAMnet",
+	"url": " https://rseng.github.io/software/repository/github/micahvista/MAMnet",
+	"content": "MAMnet uses a deep learning network to call genetic variants from third generation DNA sequencing data."
 	},
-	"github/NLESC-JCER/EigenCuda": {
-	"id": "github/NLESC-JCER/EigenCuda",
-	"title": "github/NLESC-JCER/EigenCuda",
-	"url": " https://rseng.github.io/software/repository/github/NLESC-JCER/EigenCuda",
-	"content": "Offload Eigen operations to GPUs"
+	"github/scotthgn/AGNvar": {
+	"id": "github/scotthgn/AGNvar",
+	"title": "github/scotthgn/AGNvar",
+	"url": " https://rseng.github.io/software/repository/github/scotthgn/AGNvar",
+	"content": "Python code for modelling spectral timing properties in AGN. Performs calculations of fully time-dependent SEDs following an input variable X-ray light-curve (See Hagen &amp; Done (2023a)"
 	},
-	"github/NLESC-JCER/Fortran_Davidson": {
-	"id": "github/NLESC-JCER/Fortran_Davidson",
-	"title": "github/NLESC-JCER/Fortran_Davidson",
-	"url": " https://rseng.github.io/software/repository/github/NLESC-JCER/Fortran_Davidson",
-	"content": "Davidson eigensolver implemented in Fortran"
+	"github/scotthgn/relagn": {
+	"id": "github/scotthgn/relagn",
+	"title": "github/scotthgn/relagn",
+	"url": " https://rseng.github.io/software/repository/github/scotthgn/relagn",
+	"content": "AGN SED model based off AGNSED (Kubota &amp; Done 2018), but taking into account full GR ray tracing. These relativistic correction are calculated by doing the convolution with the relativistic transfer code KYCONV (Dovciak, Karas &amp; Yaqoob 2004) at each radial annulus"
 	},
-	"github/NLESC-JCER/QMCTorch": {
-	"id": "github/NLESC-JCER/QMCTorch",
-	"title": "github/NLESC-JCER/QMCTorch",
-	"url": " https://rseng.github.io/software/repository/github/NLESC-JCER/QMCTorch",
-	"content": "Pytorch Implementation of Real Space Quantum Monte Carlo Simulations of Molecular Systems"
+	"github/Higgins00/TESS-Localize": {
+	"id": "github/Higgins00/TESS-Localize",
+	"title": "github/Higgins00/TESS-Localize",
+	"url": " https://rseng.github.io/software/repository/github/Higgins00/TESS-Localize",
+	"content": "Code for localizing variable star signatures in TESS Photometry"
 	},
-	"github/xszhu-lab/AGImpute": {
-	"id": "github/xszhu-lab/AGImpute",
-	"title": "github/xszhu-lab/AGImpute",
-	"url": " https://rseng.github.io/software/repository/github/xszhu-lab/AGImpute",
-	"content": "A composite structure model for single-cell RNA-seq imputation"
+	"github/tuoyl/tat-pulsar": {
+	"id": "github/tuoyl/tat-pulsar",
+	"title": "github/tuoyl/tat-pulsar",
+	"url": " https://rseng.github.io/software/repository/github/tuoyl/tat-pulsar",
+	"content": "A Python based pulsar timing analysis tools (TAT)."
 	},
-	"github/mwvgroup/pwv_kpno": {
-	"id": "github/mwvgroup/pwv_kpno",
-	"title": "github/mwvgroup/pwv_kpno",
-	"url": " https://rseng.github.io/software/repository/github/mwvgroup/pwv_kpno",
-	"content": "GPS modeling of the H20 atmospheric transmission at user customizable sites"
+	"github/ConorMacBride/mcalf": {
+	"id": "github/ConorMacBride/mcalf",
+	"title": "github/ConorMacBride/mcalf",
+	"url": " https://rseng.github.io/software/repository/github/ConorMacBride/mcalf",
+	"content": "MCALF: Multi-Component Atmospheric Line Fitting"
 	},
-	"github/jdidion/atropos": {
-	"id": "github/jdidion/atropos",
-	"title": "github/jdidion/atropos",
-	"url": " https://rseng.github.io/software/repository/github/jdidion/atropos",
-	"content": "An NGS read trimming tool that is specific, sensitive, and speedy. (production)"
+	"github/napakalas/casbert": {
+	"id": "github/napakalas/casbert",
+	"title": "github/napakalas/casbert",
+	"url": " https://rseng.github.io/software/repository/github/napakalas/casbert",
+	"content": "None"
 	},
-	"github/wangsiwei2010/FPMVS-CAG": {
-	"id": "github/wangsiwei2010/FPMVS-CAG",
-	"title": "github/wangsiwei2010/FPMVS-CAG",
-	"url": " https://rseng.github.io/software/repository/github/wangsiwei2010/FPMVS-CAG",
-	"content": "code of &#34;Fast Parameter-free Multi-view Subspace Clustering with Consensus Anchor Guidance &#34; published in IEEE TIP2022"
+	"github/tensorlayer/tensorlayer": {
+	"id": "github/tensorlayer/tensorlayer",
+	"title": "github/tensorlayer/tensorlayer",
+	"url": " https://rseng.github.io/software/repository/github/tensorlayer/tensorlayer",
+	"content": "Deep Learning and Reinforcement Learning Library for Scientists and Engineers "
 	},
-	"github/cosimameyer/overviewR": {
-	"id": "github/cosimameyer/overviewR",
-	"title": "github/cosimameyer/overviewR",
-	"url": " https://rseng.github.io/software/repository/github/cosimameyer/overviewR",
-	"content": "Easily Extracting Information About Your Data"
+	"github/NiallJeffrey/DeepMass": {
+	"id": "github/NiallJeffrey/DeepMass",
+	"title": "github/NiallJeffrey/DeepMass",
+	"url": " https://rseng.github.io/software/repository/github/NiallJeffrey/DeepMass",
+	"content": "Cosmological map inference with deep learning"
 	},
-	"github/jeffzhen/omnical": {
-	"id": "github/jeffzhen/omnical",
-	"title": "github/jeffzhen/omnical",
-	"url": " https://rseng.github.io/software/repository/github/jeffzhen/omnical",
-	"content": "Redundant calibration code for low frequency radio interferometers, managed by Jeff Zheng"
+	"github/NiallJeffrey/BornRaytrace": {
+	"id": "github/NiallJeffrey/BornRaytrace",
+	"title": "github/NiallJeffrey/BornRaytrace",
+	"url": " https://rseng.github.io/software/repository/github/NiallJeffrey/BornRaytrace",
+	"content": "BornRaytrace: simulating weak gravitational lensing effects"
 	},
-	"github/alstat/ALUES": {
-	"id": "github/alstat/ALUES",
-	"title": "github/alstat/ALUES",
-	"url": " https://rseng.github.io/software/repository/github/alstat/ALUES",
-	"content": "Agricultural Land Use Evaluation System"
+	"github/plumed/plumed2": {
+	"id": "github/plumed/plumed2",
+	"title": "github/plumed/plumed2",
+	"url": " https://rseng.github.io/software/repository/github/plumed/plumed2",
+	"content": "Development version of plumed 2"
 	},
-	"github/pec27/lizard": {
-	"id": "github/pec27/lizard",
-	"title": "github/pec27/lizard",
-	"url": " https://rseng.github.io/software/repository/github/pec27/lizard",
-	"content": "lizard is an open-source code for the creation of particle initial conditions for cosmological simulations"
+	"github/tobiasrausch/wally": {
+	"id": "github/tobiasrausch/wally",
+	"title": "github/tobiasrausch/wally",
+	"url": " https://rseng.github.io/software/repository/github/tobiasrausch/wally",
+	"content": "Wally: Visualization of aligned sequencing reads and contigs"
 	},
-	"github/pec27/smerfs": {
-	"id": "github/pec27/smerfs",
-	"title": "github/pec27/smerfs",
-	"url": " https://rseng.github.io/software/repository/github/pec27/smerfs",
-	"content": "Creating large realisations of random fields on the sphere"
+	"github/tobiasrausch/alfred": {
+	"id": "github/tobiasrausch/alfred",
+	"title": "github/tobiasrausch/alfred",
+	"url": " https://rseng.github.io/software/repository/github/tobiasrausch/alfred",
+	"content": "BAM Statistics, Feature Counting and Annotation"
 	},
-	"github/pec27/hfof": {
-	"id": "github/pec27/hfof",
-	"title": "github/pec27/hfof",
-	"url": " https://rseng.github.io/software/repository/github/pec27/hfof",
-	"content": "Friends-of-Friends via spatial hashing"
+	"github/tobiasrausch/lorax": {
+	"id": "github/tobiasrausch/lorax",
+	"title": "github/tobiasrausch/lorax",
+	"url": " https://rseng.github.io/software/repository/github/tobiasrausch/lorax",
+	"content": "A long-read analysis toolbox for cancer genomics"
 	},
-	"github/BASTAcode/BASTA": {
-	"id": "github/BASTAcode/BASTA",
-	"title": "github/BASTAcode/BASTA",
-	"url": " https://rseng.github.io/software/repository/github/BASTAcode/BASTA",
-	"content": "BASTA: The BAyesian STellar Algorithm"
+	"github/mms-fcul/PypKa": {
+	"id": "github/mms-fcul/PypKa",
+	"title": "github/mms-fcul/PypKa",
+	"url": " https://rseng.github.io/software/repository/github/mms-fcul/PypKa",
+	"content": "A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism"
 	},
-	"github/twosixlabs/magicwand-datatool": {
-	"id": "github/twosixlabs/magicwand-datatool",
-	"title": "github/twosixlabs/magicwand-datatool",
-	"url": " https://rseng.github.io/software/repository/github/twosixlabs/magicwand-datatool",
-	"content": "Magicwand tool to generate tcp traffic data"
+	"github/manodeep/Corrfunc": {
+	"id": "github/manodeep/Corrfunc",
+	"title": "github/manodeep/Corrfunc",
+	"url": " https://rseng.github.io/software/repository/github/manodeep/Corrfunc",
+	"content": "⚡️⚡️⚡️Blazing fast correlation functions on the CPU."
 	},
-	"github/GOVS-pack/GOVS": {
-	"id": "github/GOVS-pack/GOVS",
-	"title": "github/GOVS-pack/GOVS",
-	"url": " https://rseng.github.io/software/repository/github/GOVS-pack/GOVS",
-	"content": "Genome optimization via virtual simulation"
+	"github/manodeep/TesseRACt": {
+	"id": "github/manodeep/TesseRACt",
+	"title": "github/manodeep/TesseRACt",
+	"url": " https://rseng.github.io/software/repository/github/manodeep/TesseRACt",
+	"content": "None"
 	},
-	"github/ifilot/edp": {
-	"id": "github/ifilot/edp",
-	"title": "github/ifilot/edp",
-	"url": " https://rseng.github.io/software/repository/github/ifilot/edp",
-	"content": "Electron Density Plotter"
+	"github/CollinErickson/GauPro": {
+	"id": "github/CollinErickson/GauPro",
+	"title": "github/CollinErickson/GauPro",
+	"url": " https://rseng.github.io/software/repository/github/CollinErickson/GauPro",
+	"content": "R package for Gaussian process modeling"
 	},
-	"github/SMTG-UCL/surfaxe": {
-	"id": "github/SMTG-UCL/surfaxe",
-	"title": "github/SMTG-UCL/surfaxe",
-	"url": " https://rseng.github.io/software/repository/github/SMTG-UCL/surfaxe",
-	"content": "Dealing with slabs for first principles calculations of surfaces"
+	"github/adriancorrendo/metrica": {
+	"id": "github/adriancorrendo/metrica",
+	"title": "github/adriancorrendo/metrica",
+	"url": " https://rseng.github.io/software/repository/github/adriancorrendo/metrica",
+	"content": "Prediction Performance Metrics"
 	},
-	"github/SMTG-UCL/ShakeNBreak": {
-	"id": "github/SMTG-UCL/ShakeNBreak",
-	"title": "github/SMTG-UCL/ShakeNBreak",
-	"url": " https://rseng.github.io/software/repository/github/SMTG-UCL/ShakeNBreak",
-	"content": "Defect structure-searching method employing chemically-guided bond distortions to locate ground-state and metastable structures of point defects in solid materials."
+	"github/Hoecker-Lab/atligator": {
+	"id": "github/Hoecker-Lab/atligator",
+	"title": "github/Hoecker-Lab/atligator",
+	"url": " https://rseng.github.io/software/repository/github/Hoecker-Lab/atligator",
+	"content": "Analysis and design of protein-protein or protein-peptide interactions based on atlas database."
 	},
-	"github/jakobherpich/pyICs": {
-	"id": "github/jakobherpich/pyICs",
-	"title": "github/jakobherpich/pyICs",
-	"url": " https://rseng.github.io/software/repository/github/jakobherpich/pyICs",
-	"content": "An initial conditions creator for isolated galaxy formation simulations."
+	"github/abinit/abinit": {
+	"id": "github/abinit/abinit",
+	"title": "github/abinit/abinit",
+	"url": " https://rseng.github.io/software/repository/github/abinit/abinit",
+	"content": "The official github mirror of the Abinit repository. We welcome bug fixes and improvements. Note that most of the active developments are hosted on our https://gitlab.abinit.org/ server.  Before embarking on making significant changes, please contact the Abinit group."
 	},
-	"github/musoke/ultradark.jl": {
-	"id": "github/musoke/ultradark.jl",
-	"title": "github/musoke/ultradark.jl",
-	"url": " https://rseng.github.io/software/repository/github/musoke/ultradark.jl",
-	"content": "Simulations of cosmological scalar fields"
+	"github/lilyminium/psiresp": {
+	"id": "github/lilyminium/psiresp",
+	"title": "github/lilyminium/psiresp",
+	"url": " https://rseng.github.io/software/repository/github/lilyminium/psiresp",
+	"content": "RESP with inter- and intra-molecular constraints in Psi4."
 	},
-	"github/musoke/UltraDark.jl": {
-	"id": "github/musoke/UltraDark.jl",
-	"title": "github/musoke/UltraDark.jl",
-	"url": " https://rseng.github.io/software/repository/github/musoke/UltraDark.jl",
-	"content": "Simulations of cosmological scalar fields"
+	"github/auckland-cosmo/PyUltraLight": {
+	"id": "github/auckland-cosmo/PyUltraLight",
+	"title": "github/auckland-cosmo/PyUltraLight",
+	"url": " https://rseng.github.io/software/repository/github/auckland-cosmo/PyUltraLight",
+	"content": "Pseudo-spectral Python code to compute ultralight dark matter dynamics.  "
 	},
-	"github/johnh2o2/cuvarbase": {
-	"id": "github/johnh2o2/cuvarbase",
-	"title": "github/johnh2o2/cuvarbase",
-	"url": " https://rseng.github.io/software/repository/github/johnh2o2/cuvarbase",
-	"content": "Python library for fast time-series analysis on CUDA GPUs"
+	"github/auckland-cosmo/interp-mc": {
+	"id": "github/auckland-cosmo/interp-mc",
+	"title": "github/auckland-cosmo/interp-mc",
+	"url": " https://rseng.github.io/software/repository/github/auckland-cosmo/interp-mc",
+	"content": "Archival patch to CosmoMC for &#34;interp-mc&#34; paper"
 	},
-	"github/migp11/pyfastcore": {
-	"id": "github/migp11/pyfastcore",
-	"title": "github/migp11/pyfastcore",
-	"url": " https://rseng.github.io/software/repository/github/migp11/pyfastcore",
-	"content": "A python implementation of the context-specific model extraction method FastCore by Vlassis et al. (2014)."
+	"github/auckland-cosmo/defrost-mpi": {
+	"id": "github/auckland-cosmo/defrost-mpi",
+	"title": "github/auckland-cosmo/defrost-mpi",
+	"url": " https://rseng.github.io/software/repository/github/auckland-cosmo/defrost-mpi",
+	"content": "MPI version of the defrost code "
 	},
-	"github/meta-logic/sequoia": {
-	"id": "github/meta-logic/sequoia",
-	"title": "github/meta-logic/sequoia",
-	"url": " https://rseng.github.io/software/repository/github/meta-logic/sequoia",
-	"content": "Design, play with, and analyze sequent calculus proof systems."
+	"github/radio-astro-tools/spectral-cube": {
+	"id": "github/radio-astro-tools/spectral-cube",
+	"title": "github/radio-astro-tools/spectral-cube",
+	"url": " https://rseng.github.io/software/repository/github/radio-astro-tools/spectral-cube",
+	"content": "Library for reading and analyzing astrophysical spectral data cubes"
 	},
-	"github/ijuric/MAPS": {
-	"id": "github/ijuric/MAPS",
-	"title": "github/ijuric/MAPS",
-	"url": " https://rseng.github.io/software/repository/github/ijuric/MAPS",
-	"content": "MAPS (Model-based Analysis of PLAC-Seq data) pipeline is a a set of multiple scripts used to analyze PLAC-Seq and HiChIP data."
+	"github/radio-astro-tools/uvcombine": {
+	"id": "github/radio-astro-tools/uvcombine",
+	"title": "github/radio-astro-tools/uvcombine",
+	"url": " https://rseng.github.io/software/repository/github/radio-astro-tools/uvcombine",
+	"content": "Combine images made with different resolutions, including the &#34;feathering&#34; technique for interferometry data."
 	},
-	"github/jonas/tig": {
-	"id": "github/jonas/tig",
-	"title": "github/jonas/tig",
-	"url": " https://rseng.github.io/software/repository/github/jonas/tig",
-	"content": "Text-mode interface for git"
+	"github/radio-astro-tools/pvextractor": {
+	"id": "github/radio-astro-tools/pvextractor",
+	"title": "github/radio-astro-tools/pvextractor",
+	"url": " https://rseng.github.io/software/repository/github/radio-astro-tools/pvextractor",
+	"content": "Position-Velocity diagram extract (but it can slice out other things too)"
 	},
-	"github/rmaphoh/AutoMorph": {
-	"id": "github/rmaphoh/AutoMorph",
-	"title": "github/rmaphoh/AutoMorph",
-	"url": " https://rseng.github.io/software/repository/github/rmaphoh/AutoMorph",
-	"content": "vessel segmentation, artery and vein, optic disc, vascular feature analysis"
+	"github/brocklab/pycashier": {
+	"id": "github/brocklab/pycashier",
+	"title": "github/brocklab/pycashier",
+	"url": " https://rseng.github.io/software/repository/github/brocklab/pycashier",
+	"content": "cash in on DNA barcode tags"
 	},
-	"github/artefactory/choice-learn": {
-	"id": "github/artefactory/choice-learn",
-	"title": "github/artefactory/choice-learn",
-	"url": " https://rseng.github.io/software/repository/github/artefactory/choice-learn",
-	"content": "Discrete choice modeling in Python with large datasets &amp; models - Assortment &amp; Pricing Optimization ."
+	"github/SietzeN/glottospace": {
+	"id": "github/SietzeN/glottospace",
+	"title": "github/SietzeN/glottospace",
+	"url": " https://rseng.github.io/software/repository/github/SietzeN/glottospace",
+	"content": "Geospatial analysis of linguistic data"
 	},
-	"github/libdynd/dynd-python": {
-	"id": "github/libdynd/dynd-python",
-	"title": "github/libdynd/dynd-python",
-	"url": " https://rseng.github.io/software/repository/github/libdynd/dynd-python",
-	"content": "Python exposure of dynd"
+	"github/margudo/LSSGALPY": {
+	"id": "github/margudo/LSSGALPY",
+	"title": "github/margudo/LSSGALPY",
+	"url": " https://rseng.github.io/software/repository/github/margudo/LSSGALPY",
+	"content": "Python tool for the interactive visualization of the large-scale environment around galaxies on the 3D space "
 	},
-	"github/rvalieris/parallel-fastq-dump": {
-	"id": "github/rvalieris/parallel-fastq-dump",
-	"title": "github/rvalieris/parallel-fastq-dump",
-	"url": " https://rseng.github.io/software/repository/github/rvalieris/parallel-fastq-dump",
-	"content": "parallel fastq-dump wrapper"
+	"github/daeken/Emokit": {
+	"id": "github/daeken/Emokit",
+	"title": "github/daeken/Emokit",
+	"url": " https://rseng.github.io/software/repository/github/daeken/Emokit",
+	"content": "Python library for the Emotiv EPOC headset"
 	},
-	"github/SWAT-Sheffield/SAC": {
-	"id": "github/SWAT-Sheffield/SAC",
-	"title": "github/SWAT-Sheffield/SAC",
-	"url": " https://rseng.github.io/software/repository/github/SWAT-Sheffield/SAC",
-	"content": "The Sheffield Advanced Code"
+	"github/variomes/sibtm-variomes": {
+	"id": "github/variomes/sibtm-variomes",
+	"title": "github/variomes/sibtm-variomes",
+	"url": " https://rseng.github.io/software/repository/github/variomes/sibtm-variomes",
+	"content": "None"
 	},
-	"github/lnferris/ocean_data_tools": {
-	"id": "github/lnferris/ocean_data_tools",
-	"title": "github/lnferris/ocean_data_tools",
-	"url": " https://rseng.github.io/software/repository/github/lnferris/ocean_data_tools",
-	"content": "A MATLAB toolbox for interacting with bulk freely-available oceanographic data."
+	"github/pmeier/pystiche": {
+	"id": "github/pmeier/pystiche",
+	"title": "github/pmeier/pystiche",
+	"url": " https://rseng.github.io/software/repository/github/pmeier/pystiche",
+	"content": "Framework for Neural Style Transfer (NST) built upon PyTorch"
 	},
-	"github/akashdhruv/BoxKit": {
-	"id": "github/akashdhruv/BoxKit",
-	"title": "github/akashdhruv/BoxKit",
-	"url": " https://rseng.github.io/software/repository/github/akashdhruv/BoxKit",
-	"content": "A Python library to manage analysis of block-structured simulation datasets."
+	"github/jaschers/damspi": {
+	"id": "github/jaschers/damspi",
+	"title": "github/jaschers/damspi",
+	"url": " https://rseng.github.io/software/repository/github/jaschers/damspi",
+	"content": "None"
 	},
-	"github/simon-prunet/defringe": {
-	"id": "github/simon-prunet/defringe",
-	"title": "github/simon-prunet/defringe",
-	"url": " https://rseng.github.io/software/repository/github/simon-prunet/defringe",
-	"content": "CCD infrared image defringing code in python, using cupy for GPU acceleration. Based on matrix completion of noisy matrix with low-rank regularization via nuclear norm."
+	"github/MAnalytics/opitools": {
+	"id": "github/MAnalytics/opitools",
+	"title": "github/MAnalytics/opitools",
+	"url": " https://rseng.github.io/software/repository/github/MAnalytics/opitools",
+	"content": "An R-package for opinion analysis of social media data"
 	},
-	"github/flaminiafortuni/FORECAST": {
-	"id": "github/flaminiafortuni/FORECAST",
-	"title": "github/flaminiafortuni/FORECAST",
-	"url": " https://rseng.github.io/software/repository/github/flaminiafortuni/FORECAST",
-	"content": "None"
+	"github/MAnalytics/akmedoids": {
+	"id": "github/MAnalytics/akmedoids",
+	"title": "github/MAnalytics/akmedoids",
+	"url": " https://rseng.github.io/software/repository/github/MAnalytics/akmedoids",
+	"content": "akmedoids for longitudinal clustering"
 	},
-	"github/XSLiuLab/Seq2Neo": {
-	"id": "github/XSLiuLab/Seq2Neo",
-	"title": "github/XSLiuLab/Seq2Neo",
-	"url": " https://rseng.github.io/software/repository/github/XSLiuLab/Seq2Neo",
-	"content": "Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction"
+	"github/bc3LC/gcamreport": {
+	"id": "github/bc3LC/gcamreport",
+	"title": "github/bc3LC/gcamreport",
+	"url": " https://rseng.github.io/software/repository/github/bc3LC/gcamreport",
+	"content": "Package to process GCAM results and standardize the format"
 	},
-	"github/nrao/UniPOPS": {
-	"id": "github/nrao/UniPOPS",
-	"title": "github/nrao/UniPOPS",
-	"url": " https://rseng.github.io/software/repository/github/nrao/UniPOPS",
-	"content": "Archive of final NRAO UniPOPS source code distribution (version 3.5)"
+	"github/milkschen/leviosam2": {
+	"id": "github/milkschen/leviosam2",
+	"title": "github/milkschen/leviosam2",
+	"url": " https://rseng.github.io/software/repository/github/milkschen/leviosam2",
+	"content": "Fast and accurate coordinate conversion between assemblies"
 	},
-	"github/BioSTEAMDevelopmentGroup/thermosteam": {
-	"id": "github/BioSTEAMDevelopmentGroup/thermosteam",
-	"title": "github/BioSTEAMDevelopmentGroup/thermosteam",
-	"url": " https://rseng.github.io/software/repository/github/BioSTEAMDevelopmentGroup/thermosteam",
-	"content": "BioSTEAM&#39;s Premier Thermodynamic Engine"
+	"github/kd0kfo/cosmology": {
+	"id": "github/kd0kfo/cosmology",
+	"title": "github/kd0kfo/cosmology",
+	"url": " https://rseng.github.io/software/repository/github/kd0kfo/cosmology",
+	"content": "Applications to simulate gravitational lensing, through ray tracing and shear calculation. See http://research.davecoss.com for more details."
 	},
-	"github/akcochrane/TEfits": {
-	"id": "github/akcochrane/TEfits",
-	"title": "github/akcochrane/TEfits",
-	"url": " https://rseng.github.io/software/repository/github/akcochrane/TEfits",
-	"content": "R package for streamlined nonlinear regression"
+	"github/hugoledoux/startinpy": {
+	"id": "github/hugoledoux/startinpy",
+	"title": "github/hugoledoux/startinpy",
+	"url": " https://rseng.github.io/software/repository/github/hugoledoux/startinpy",
+	"content": "A Python library for modelling and processing 2.5D terrains using a (2D) Delaunay triangulation."
 	},
-	"github/amkrajewski/nimCSO": {
-	"id": "github/amkrajewski/nimCSO",
-	"title": "github/amkrajewski/nimCSO",
-	"url": " https://rseng.github.io/software/repository/github/amkrajewski/nimCSO",
-	"content": "nim Composition Space Optimization is a high-performance tool leveraging metaprogramming to implement several methods for selecting components (data dimensions) in compositional datasets, as to optimize the data availability and density for applications such as machine learning."
+	"github/villano-lab/nrCascadeSim": {
+	"id": "github/villano-lab/nrCascadeSim",
+	"title": "github/villano-lab/nrCascadeSim",
+	"url": " https://rseng.github.io/software/repository/github/villano-lab/nrCascadeSim",
+	"content": "calculating the NR spectrum resulting from neutron-capture cascades."
 	},
-	"github/MREYE-LUMC/ZOSPy": {
-	"id": "github/MREYE-LUMC/ZOSPy",
-	"title": "github/MREYE-LUMC/ZOSPy",
-	"url": " https://rseng.github.io/software/repository/github/MREYE-LUMC/ZOSPy",
-	"content": "Wrapper around the Zemax OpticStudio API. Provides a more pythonic and intuitive way to interact with the ZOS-API through python using a .NET connection. "
+	"github/cblakeastro/intensitypower": {
+	"id": "github/cblakeastro/intensitypower",
+	"title": "github/cblakeastro/intensitypower",
+	"url": " https://rseng.github.io/software/repository/github/cblakeastro/intensitypower",
+	"content": "None"
 	},
-	"github/AgrDataSci/climatrends": {
-	"id": "github/AgrDataSci/climatrends",
-	"title": "github/AgrDataSci/climatrends",
-	"url": " https://rseng.github.io/software/repository/github/AgrDataSci/climatrends",
-	"content": "Climate Variability Indices for Ecological Modelling"
+	"github/quanted/esat": {
+	"id": "github/quanted/esat",
+	"title": "github/quanted/esat",
+	"url": " https://rseng.github.io/software/repository/github/quanted/esat",
+	"content": "EPA&#39;s Environmental Source Apportionment Toolkit (ESAT)  python package"
 	},
-	"github/imcgreer/simqso": {
-	"id": "github/imcgreer/simqso",
-	"title": "github/imcgreer/simqso",
-	"url": " https://rseng.github.io/software/repository/github/imcgreer/simqso",
-	"content": "Module for generating simulated quasar spectra"
+	"github/moble/scri": {
+	"id": "github/moble/scri",
+	"title": "github/moble/scri",
+	"url": " https://rseng.github.io/software/repository/github/moble/scri",
+	"content": "Python/numba code for manipulating time-dependent functions of spin-weighted spherical harmonics"
 	},
-	"github/HofstadterTools/HofstadterTools": {
-	"id": "github/HofstadterTools/HofstadterTools",
-	"title": "github/HofstadterTools/HofstadterTools",
-	"url": " https://rseng.github.io/software/repository/github/HofstadterTools/HofstadterTools",
-	"content": "A Python package for analyzing the Hofstadter model."
+	"github/moble/GWFrames": {
+	"id": "github/moble/GWFrames",
+	"title": "github/moble/GWFrames",
+	"url": " https://rseng.github.io/software/repository/github/moble/GWFrames",
+	"content": "Manipulate gravitational waveforms—changing frames, and so on."
 	},
-	"github/Zafiirah13/meercrab": {
-	"id": "github/Zafiirah13/meercrab",
-	"title": "github/Zafiirah13/meercrab",
-	"url": " https://rseng.github.io/software/repository/github/Zafiirah13/meercrab",
-	"content": "MeerLICHT Classification of Real And Bogus using deep learning"
+	"github/e-merlin/eMERLIN_CASA_pipeline": {
+	"id": "github/e-merlin/eMERLIN_CASA_pipeline",
+	"title": "github/e-merlin/eMERLIN_CASA_pipeline",
+	"url": " https://rseng.github.io/software/repository/github/e-merlin/eMERLIN_CASA_pipeline",
+	"content": "This is CASA eMERLIN pipeline to calibrate data from the e-MERLIN array. Please fork the repository before making any changes and read the Coding Practices page in the wiki. Please add issues with the pipeline in the issues tab."
 	},
-	"github/elixir-luxembourg/daisy": {
-	"id": "github/elixir-luxembourg/daisy",
-	"title": "github/elixir-luxembourg/daisy",
-	"url": " https://rseng.github.io/software/repository/github/elixir-luxembourg/daisy",
-	"content": "Data Information System (DAISY) is a data bookkeeping application designed to help Biomedical Research  institutions with their GDPR compliance."
+	"github/mindearth/mobilkit": {
+	"id": "github/mindearth/mobilkit",
+	"title": "github/mindearth/mobilkit",
+	"url": " https://rseng.github.io/software/repository/github/mindearth/mobilkit",
+	"content": "A Python Toolkit for Urban Resilience and Disaster Risk Management Analytics using High Frequency Human Mobility Data"
 	},
-	"github/LindleyLentati/Cobra": {
-	"id": "github/LindleyLentati/Cobra",
-	"title": "github/LindleyLentati/Cobra",
-	"url": " https://rseng.github.io/software/repository/github/LindleyLentati/Cobra",
-	"content": "Bayesian Pulsar Searching"
+	"github/SSAGESproject/SSAGES": {
+	"id": "github/SSAGESproject/SSAGES",
+	"title": "github/SSAGESproject/SSAGES",
+	"url": " https://rseng.github.io/software/repository/github/SSAGESproject/SSAGES",
+	"content": "Software Suite for Advanced General Ensemble Simulations"
 	},
-	"github/MaceKuailv/seaduck": {
-	"id": "github/MaceKuailv/seaduck",
-	"title": "github/MaceKuailv/seaduck",
-	"url": " https://rseng.github.io/software/repository/github/MaceKuailv/seaduck",
-	"content": "A python package that interpolates data from ocean dataset from both Eulerian and Lagrangian perspective."
+	"github/opencobra/cobrapy": {
+	"id": "github/opencobra/cobrapy",
+	"title": "github/opencobra/cobrapy",
+	"url": " https://rseng.github.io/software/repository/github/opencobra/cobrapy",
+	"content": "COBRApy is a package for constraint-based modeling of metabolic networks."
 	},
-	"github/Hegghammer/daiR": {
-	"id": "github/Hegghammer/daiR",
-	"title": "github/Hegghammer/daiR",
-	"url": " https://rseng.github.io/software/repository/github/Hegghammer/daiR",
-	"content": "R package for Google Document AI "
+	"github/CmPA/iPic3D": {
+	"id": "github/CmPA/iPic3D",
+	"title": "github/CmPA/iPic3D",
+	"url": " https://rseng.github.io/software/repository/github/CmPA/iPic3D",
+	"content": "Particle-in-Cell code using the implicit moment method"
 	},
-	"github/panoptes/POCS": {
-	"id": "github/panoptes/POCS",
-	"title": "github/panoptes/POCS",
-	"url": " https://rseng.github.io/software/repository/github/panoptes/POCS",
-	"content": "An Observatory Control System for the PANOPTES citizen-science project designed to help find transiting exoplanets! :telescope: :stars:"
+	"github/spyder-ide/spyder": {
+	"id": "github/spyder-ide/spyder",
+	"title": "github/spyder-ide/spyder",
+	"url": " https://rseng.github.io/software/repository/github/spyder-ide/spyder",
+	"content": "Official repository for Spyder - The Scientific Python Development Environment"
 	},
-	"github/cosimoNigro/agnpy": {
-	"id": "github/cosimoNigro/agnpy",
-	"title": "github/cosimoNigro/agnpy",
-	"url": " https://rseng.github.io/software/repository/github/cosimoNigro/agnpy",
-	"content": "Modelling jetted Active Galactic Nuclei radiative processes with python"
+	"github/anugrahjo/PySLSQP": {
+	"id": "github/anugrahjo/PySLSQP",
+	"title": "github/anugrahjo/PySLSQP",
+	"url": " https://rseng.github.io/software/repository/github/anugrahjo/PySLSQP",
+	"content": "A transparent Python interface to the SLSQP optimization algorithm, with advanced features and visualization capabilities."
 	},
-	"github/candebellavita/vkompth": {
-	"id": "github/candebellavita/vkompth",
-	"title": "github/candebellavita/vkompth",
-	"url": " https://rseng.github.io/software/repository/github/candebellavita/vkompth",
-	"content": "None"
+	"github/amberbiology/scribl": {
+	"id": "github/amberbiology/scribl",
+	"title": "github/amberbiology/scribl",
+	"url": " https://rseng.github.io/software/repository/github/amberbiology/scribl",
+	"content": "Semantic Capture of Relationships In Biological Literature (scribl) "
 	},
-	"github/cgre-aachen/gemgis": {
-	"id": "github/cgre-aachen/gemgis",
-	"title": "github/cgre-aachen/gemgis",
-	"url": " https://rseng.github.io/software/repository/github/cgre-aachen/gemgis",
-	"content": "Spatial data processing for geomodeling"
+	"github/ZhaoXM-Lab/metaMIC": {
+	"id": "github/ZhaoXM-Lab/metaMIC",
+	"title": "github/ZhaoXM-Lab/metaMIC",
+	"url": " https://rseng.github.io/software/repository/github/ZhaoXM-Lab/metaMIC",
+	"content": "Assessing and Improving the quality of metagenomic assemblies"
 	},
-	"github/tensorlayer/tensorlayer": {
-	"id": "github/tensorlayer/tensorlayer",
-	"title": "github/tensorlayer/tensorlayer",
-	"url": " https://rseng.github.io/software/repository/github/tensorlayer/tensorlayer",
-	"content": "Deep Learning and Reinforcement Learning Library for Scientists and Engineers "
+	"github/DariaGangardt/pAGN": {
+	"id": "github/DariaGangardt/pAGN",
+	"title": "github/DariaGangardt/pAGN",
+	"url": " https://rseng.github.io/software/repository/github/DariaGangardt/pAGN",
+	"content": "Python package to solve AGN disk model equations."
 	},
-	"github/toddy15/medicalterms": {
-	"id": "github/toddy15/medicalterms",
-	"title": "github/toddy15/medicalterms",
-	"url": " https://rseng.github.io/software/repository/github/toddy15/medicalterms",
-	"content": "German medical dictionary words"
+	"github/Parsl/parsl": {
+	"id": "github/Parsl/parsl",
+	"title": "github/Parsl/parsl",
+	"url": " https://rseng.github.io/software/repository/github/Parsl/parsl",
+	"content": "Parsl - Parallel Scripting Library"
 	},
-	"github/ssadedin/bazam": {
-	"id": "github/ssadedin/bazam",
-	"title": "github/ssadedin/bazam",
-	"url": " https://rseng.github.io/software/repository/github/ssadedin/bazam",
-	"content": "A read extraction and realignment tool for next generation sequencing data"
+	"github/ch-var/SMART": {
+	"id": "github/ch-var/SMART",
+	"title": "github/ch-var/SMART",
+	"url": " https://rseng.github.io/software/repository/github/ch-var/SMART",
+	"content": "SMART (Spectral energy distributions Markov chain Analysis with Radiative Transfer models) is an open-source tool that implements a Bayesian Markov chain Monte Carlo (MCMC) method to fit the ultraviolet to millimetre spectral energy distributions (SEDs) of galaxies exclusively with radiative transfer models."
 	},
-	"github/meenakshi-kushwaha/mmaqshiny": {
-	"id": "github/meenakshi-kushwaha/mmaqshiny",
-	"title": "github/meenakshi-kushwaha/mmaqshiny",
-	"url": " https://rseng.github.io/software/repository/github/meenakshi-kushwaha/mmaqshiny",
-	"content": "R-Shiny package to explore Air-Pollution Mobile Monitoring data "
+	"github/RichardObi/medigan": {
+	"id": "github/RichardObi/medigan",
+	"title": "github/RichardObi/medigan",
+	"url": " https://rseng.github.io/software/repository/github/RichardObi/medigan",
+	"content": "medigan - A Python Library of Pretrained Generative Models for Medical Image Synthesis"
 	},
-	"github/tool-bin/ukbcc": {
-	"id": "github/tool-bin/ukbcc",
-	"title": "github/tool-bin/ukbcc",
-	"url": " https://rseng.github.io/software/repository/github/tool-bin/ukbcc",
-	"content": "UKBB Cohort Curator. "
+	"github/pelahi/VELOCIraptor-STF": {
+	"id": "github/pelahi/VELOCIraptor-STF",
+	"title": "github/pelahi/VELOCIraptor-STF",
+	"url": " https://rseng.github.io/software/repository/github/pelahi/VELOCIraptor-STF",
+	"content": "Galaxy/(sub)Halo finder for N-body simulations"
 	},
-	"github/stamatak/AxPcoords.dist": {
-	"id": "github/stamatak/AxPcoords.dist",
-	"title": "github/stamatak/AxPcoords.dist",
-	"url": " https://rseng.github.io/software/repository/github/stamatak/AxPcoords.dist",
-	"content": "AxPcoords implementation "
+	"github/pelahi/TreeFrog": {
+	"id": "github/pelahi/TreeFrog",
+	"title": "github/pelahi/TreeFrog",
+	"url": " https://rseng.github.io/software/repository/github/pelahi/TreeFrog",
+	"content": "Software to build Halo Merger Trees/compare halo catalogs"
 	},
-	"github/stamatak/ExaML": {
-	"id": "github/stamatak/ExaML",
-	"title": "github/stamatak/ExaML",
-	"url": " https://rseng.github.io/software/repository/github/stamatak/ExaML",
-	"content": "Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI"
+	"github/steven-murray/pydftools": {
+	"id": "github/steven-murray/pydftools",
+	"title": "github/steven-murray/pydftools",
+	"url": " https://rseng.github.io/software/repository/github/steven-murray/pydftools",
+	"content": "A pure-python port of the R dftools package"
 	},
-	"github/huiwenke/MineProt": {
-	"id": "github/huiwenke/MineProt",
-	"title": "github/huiwenke/MineProt",
-	"url": " https://rseng.github.io/software/repository/github/huiwenke/MineProt",
-	"content": "Modern application for custom protein curation"
+	"github/steven-murray/mrpy": {
+	"id": "github/steven-murray/mrpy",
+	"title": "github/steven-murray/mrpy",
+	"url": " https://rseng.github.io/software/repository/github/steven-murray/mrpy",
+	"content": "A Python package for calculations with the MRP parameterisation of the Halo Mass Function."
 	},
-	"github/mgckind/SparsePz": {
-	"id": "github/mgckind/SparsePz",
-	"title": "github/mgckind/SparsePz",
-	"url": " https://rseng.github.io/software/repository/github/mgckind/SparsePz",
-	"content": "Sparse Representation of Photometric Redshift PDFs"
+	"github/steven-murray/powerbox": {
+	"id": "github/steven-murray/powerbox",
+	"title": "github/steven-murray/powerbox",
+	"url": " https://rseng.github.io/software/repository/github/steven-murray/powerbox",
+	"content": "A python package for making arbitrarily structured, arbitrary-dimension boxes"
 	},
-	"github/mgckind/easyaccess": {
-	"id": "github/mgckind/easyaccess",
-	"title": "github/mgckind/easyaccess",
-	"url": " https://rseng.github.io/software/repository/github/mgckind/easyaccess",
-	"content": "SQL command line interpreter for astronomical surveys"
+	"github/IKNL/vantage6": {
+	"id": "github/IKNL/vantage6",
+	"title": "github/IKNL/vantage6",
+	"url": " https://rseng.github.io/software/repository/github/IKNL/vantage6",
+	"content": "Docker CLI package for the vantage6 infrastructure"
 	},
-	"github/bioinform/somaticseq": {
-	"id": "github/bioinform/somaticseq",
-	"title": "github/bioinform/somaticseq",
-	"url": " https://rseng.github.io/software/repository/github/bioinform/somaticseq",
-	"content": "An ensemble approach to accurately detect somatic mutations using SomaticSeq"
+	"github/mpi4py/shmem4py": {
+	"id": "github/mpi4py/shmem4py",
+	"title": "github/mpi4py/shmem4py",
+	"url": " https://rseng.github.io/software/repository/github/mpi4py/shmem4py",
+	"content": "None"
 	},
-	"github/vmplacco/linemake": {
-	"id": "github/vmplacco/linemake",
-	"title": "github/vmplacco/linemake",
-	"url": " https://rseng.github.io/software/repository/github/vmplacco/linemake",
-	"content": "linelist generator"
+	"github/kushaltirumala/WaldoInSky": {
+	"id": "github/kushaltirumala/WaldoInSky",
+	"title": "github/kushaltirumala/WaldoInSky",
+	"url": " https://rseng.github.io/software/repository/github/kushaltirumala/WaldoInSky",
+	"content": "Code Repository for `Where is Waldo (and his friends)? A comparison of anomaly detection algorithms for time-domain astronomy`"
 	},
-	"github/ShixiangWang/sigminer": {
-	"id": "github/ShixiangWang/sigminer",
-	"title": "github/ShixiangWang/sigminer",
-	"url": " https://rseng.github.io/software/repository/github/ShixiangWang/sigminer",
-	"content": "🌲 An easy-to-use and scalable toolkit for genomic alteration (mutational) signature analysis and visualization in R"
+	"github/lnasellentin/DALI": {
+	"id": "github/lnasellentin/DALI",
+	"title": "github/lnasellentin/DALI",
+	"url": " https://rseng.github.io/software/repository/github/lnasellentin/DALI",
+	"content": "Non-Gaussian Likelihood Approximations"
 	},
-	"github/nekokoe/Plasmer": {
-	"id": "github/nekokoe/Plasmer",
-	"title": "github/nekokoe/Plasmer",
-	"url": " https://rseng.github.io/software/repository/github/nekokoe/Plasmer",
-	"content": "An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features."
+	"github/mpiersonsmela/SeqVerify": {
+	"id": "github/mpiersonsmela/SeqVerify",
+	"title": "github/mpiersonsmela/SeqVerify",
+	"url": " https://rseng.github.io/software/repository/github/mpiersonsmela/SeqVerify",
+	"content": "Analyzes whole genome sequencing data for gene-editing verification"
 	},
-	"github/LTLA/basilisk": {
-	"id": "github/LTLA/basilisk",
-	"title": "github/LTLA/basilisk",
-	"url": " https://rseng.github.io/software/repository/github/LTLA/basilisk",
-	"content": "Clone of the Bioconductor repository for the basilisk package."
+	"github/bretthandrews/flexCE": {
+	"id": "github/bretthandrews/flexCE",
+	"title": "github/bretthandrews/flexCE",
+	"url": " https://rseng.github.io/software/repository/github/bretthandrews/flexCE",
+	"content": "A flexible Chemical Evolution model in python"
 	},
-	"github/LTLA/gesel.js": {
-	"id": "github/LTLA/gesel.js",
-	"title": "github/LTLA/gesel.js",
-	"url": " https://rseng.github.io/software/repository/github/LTLA/gesel.js",
-	"content": "Client-side gene set queries."
+	"github/simple-crypto/SCALib": {
+	"id": "github/simple-crypto/SCALib",
+	"title": "github/simple-crypto/SCALib",
+	"url": " https://rseng.github.io/software/repository/github/simple-crypto/SCALib",
+	"content": "Side-Channel Analysis Library"
 	},
-	"github/sbraden/circle-craters": {
-	"id": "github/sbraden/circle-craters",
-	"title": "github/sbraden/circle-craters",
-	"url": " https://rseng.github.io/software/repository/github/sbraden/circle-craters",
-	"content": "A planetary science crater-counting plugin for QGIS "
+	"github/mkplummer/Imber": {
+	"id": "github/mkplummer/Imber",
+	"title": "github/mkplummer/Imber",
+	"url": " https://rseng.github.io/software/repository/github/mkplummer/Imber",
+	"content": "Python module for both numerical simulation of stellar/substellar surfaces and fitting the resulting spectral line profiles and photometric light curves with analytical models."
 	},
-	"github/hpgem/nanomesh": {
-	"id": "github/hpgem/nanomesh",
-	"title": "github/hpgem/nanomesh",
-	"url": " https://rseng.github.io/software/repository/github/hpgem/nanomesh",
-	"content": "Python workflow tool for generating meshes from 2D and 3D microscopy image data"
+	"github/mpievolbio-scicomp/cancer_sim": {
+	"id": "github/mpievolbio-scicomp/cancer_sim",
+	"title": "github/mpievolbio-scicomp/cancer_sim",
+	"url": " https://rseng.github.io/software/repository/github/mpievolbio-scicomp/cancer_sim",
+	"content": "CancerSim: A python3 package for stochastic cancer simulation in 2D."
 	},
-	"github/JiangFangzhou/SIDM": {
-	"id": "github/JiangFangzhou/SIDM",
-	"title": "github/JiangFangzhou/SIDM",
-	"url": " https://rseng.github.io/software/repository/github/JiangFangzhou/SIDM",
-	"content": "analytical model for the density profiles of self-interacting dark-matter halos with inhabitant galaxies"
+	"github/matplotlib/matplotlib": {
+	"id": "github/matplotlib/matplotlib",
+	"title": "github/matplotlib/matplotlib",
+	"url": " https://rseng.github.io/software/repository/github/matplotlib/matplotlib",
+	"content": "matplotlib: plotting with Python"
 	},
-	"github/fuyw-aisw/GALA": {
-	"id": "github/fuyw-aisw/GALA",
-	"title": "github/fuyw-aisw/GALA",
-	"url": " https://rseng.github.io/software/repository/github/fuyw-aisw/GALA",
+	"github/CosmoTool/ECLIPSE": {
+	"id": "github/CosmoTool/ECLIPSE",
+	"title": "github/CosmoTool/ECLIPSE",
+	"url": " https://rseng.github.io/software/repository/github/CosmoTool/ECLIPSE",
 	"content": "None"
 	},
-	"github/oleksulkowski/Syn-CpG-Spacer": {
-	"id": "github/oleksulkowski/Syn-CpG-Spacer",
-	"title": "github/oleksulkowski/Syn-CpG-Spacer",
-	"url": " https://rseng.github.io/software/repository/github/oleksulkowski/Syn-CpG-Spacer",
-	"content": "A Panel progressive web app for synonymous recoding of viral genomes with CpG dinucleotides"
+	"github/astropatel/twinkle": {
+	"id": "github/astropatel/twinkle",
+	"title": "github/astropatel/twinkle",
+	"url": " https://rseng.github.io/software/repository/github/astropatel/twinkle",
+	"content": "Calculate and plot spectral energy distribution of main-sequence stars with additional option of blackbody/greybody calculation from mid-IR excess"
 	},
-	"github/mkelley/zchecker": {
-	"id": "github/mkelley/zchecker",
-	"title": "github/mkelley/zchecker",
-	"url": " https://rseng.github.io/software/repository/github/mkelley/zchecker",
-	"content": "ZTF moving target checker for short lists of moving targets"
+	"github/arq5x/poretools": {
+	"id": "github/arq5x/poretools",
+	"title": "github/arq5x/poretools",
+	"url": " https://rseng.github.io/software/repository/github/arq5x/poretools",
+	"content": "a toolkit for working with Oxford nanopore data"
 	},
-	"github/mkelley/calviacat": {
-	"id": "github/mkelley/calviacat",
-	"title": "github/mkelley/calviacat",
-	"url": " https://rseng.github.io/software/repository/github/mkelley/calviacat",
-	"content": "Calibrate star photometry by comparison to a catalog."
+	"github/arq5x/bedtools2": {
+	"id": "github/arq5x/bedtools2",
+	"title": "github/arq5x/bedtools2",
+	"url": " https://rseng.github.io/software/repository/github/arq5x/bedtools2",
+	"content": "bedtools - the swiss army knife for genome arithmetic"
 	},
-	"github/AnkitBarik/planetMagFields": {
-	"id": "github/AnkitBarik/planetMagFields",
-	"title": "github/AnkitBarik/planetMagFields",
-	"url": " https://rseng.github.io/software/repository/github/AnkitBarik/planetMagFields",
-	"content": "Routines to plot magnetic fields of planets in our solar system"
+	"github/arq5x/lumpy-sv": {
+	"id": "github/arq5x/lumpy-sv",
+	"title": "github/arq5x/lumpy-sv",
+	"url": " https://rseng.github.io/software/repository/github/arq5x/lumpy-sv",
+	"content": "lumpy: a general probabilistic framework for structural variant discovery"
 	},
-	"github/MariaTsantaki/FASMA-synthesis": {
-	"id": "github/MariaTsantaki/FASMA-synthesis",
-	"title": "github/MariaTsantaki/FASMA-synthesis",
-	"url": " https://rseng.github.io/software/repository/github/MariaTsantaki/FASMA-synthesis",
-	"content": "Python code for stellar spectral analysis"
+	"github/arq5x/grabix": {
+	"id": "github/arq5x/grabix",
+	"title": "github/arq5x/grabix",
+	"url": " https://rseng.github.io/software/repository/github/arq5x/grabix",
+	"content": " a wee tool for random access into BGZF files."
 	},
-	"github/raghuastro/GRIZZLY": {
-	"id": "github/raghuastro/GRIZZLY",
-	"title": "github/raghuastro/GRIZZLY",
-	"url": " https://rseng.github.io/software/repository/github/raghuastro/GRIZZLY",
-	"content": "None"
+	"github/Aminsinichi/wearable-hrv": {
+	"id": "github/Aminsinichi/wearable-hrv",
+	"title": "github/Aminsinichi/wearable-hrv",
+	"url": " https://rseng.github.io/software/repository/github/Aminsinichi/wearable-hrv",
+	"content": "A Python package for the validation of heart rate and heart rate variability in wearables"
 	},
-	"github/xxsds/DYNAMIC": {
-	"id": "github/xxsds/DYNAMIC",
-	"title": "github/xxsds/DYNAMIC",
-	"url": " https://rseng.github.io/software/repository/github/xxsds/DYNAMIC",
-	"content": "Dynamic succinct/compressed data structures"
+	"github/marco-oliva/pfp": {
+	"id": "github/marco-oliva/pfp",
+	"title": "github/marco-oliva/pfp",
+	"url": " https://rseng.github.io/software/repository/github/marco-oliva/pfp",
+	"content": "Prefix Free Parsing"
 	},
-	"github/baiyueh/PANINIpy": {
-	"id": "github/baiyueh/PANINIpy",
-	"title": "github/baiyueh/PANINIpy",
-	"url": " https://rseng.github.io/software/repository/github/baiyueh/PANINIpy",
-	"content": "PANINIpy: Package of Algorithms for Nonparametric Inference with Networks in Python"
+	"github/will-rowe/groot": {
+	"id": "github/will-rowe/groot",
+	"title": "github/will-rowe/groot",
+	"url": " https://rseng.github.io/software/repository/github/will-rowe/groot",
+	"content": "A resistome profiler for Graphing Resistance Out Of meTagenomes"
 	},
-	"github/bcalden/ClusterPyXT": {
-	"id": "github/bcalden/ClusterPyXT",
-	"title": "github/bcalden/ClusterPyXT",
-	"url": " https://rseng.github.io/software/repository/github/bcalden/ClusterPyXT",
-	"content": "The Galaxy Cluster ‘Pypeline’ for X-ray Temperature Maps"
+	"github/will-rowe/hulk": {
+	"id": "github/will-rowe/hulk",
+	"title": "github/will-rowe/hulk",
+	"url": " https://rseng.github.io/software/repository/github/will-rowe/hulk",
+	"content": "Histosketching Using Little Kmers"
 	},
-	"github/retostauffer/python-colorspace": {
-	"id": "github/retostauffer/python-colorspace",
-	"title": "github/retostauffer/python-colorspace",
-	"url": " https://rseng.github.io/software/repository/github/retostauffer/python-colorspace",
-	"content": "Python colorspace implementation. Documentation available on https://retostauffer.github.io/python-colorspace/. The latest release is available via the Python Package Index (PyPI) via https://pypi.org/project/colorspace/"
+	"github/ComparativeGenomicsToolkit/cactus": {
+	"id": "github/ComparativeGenomicsToolkit/cactus",
+	"title": "github/ComparativeGenomicsToolkit/cactus",
+	"url": " https://rseng.github.io/software/repository/github/ComparativeGenomicsToolkit/cactus",
+	"content": "Official home of genome aligner based upon notion of Cactus graphs"
 	},
-	"github/tbronzwaer/raptor": {
-	"id": "github/tbronzwaer/raptor",
-	"title": "github/tbronzwaer/raptor",
-	"url": " https://rseng.github.io/software/repository/github/tbronzwaer/raptor",
-	"content": "Public version of the RAPTOR code for radiative transfer in arbitrary spacetimes. See README file for instructions and contact details."
+	"github/shenwei356/csvtk": {
+	"id": "github/shenwei356/csvtk",
+	"title": "github/shenwei356/csvtk",
+	"url": " https://rseng.github.io/software/repository/github/shenwei356/csvtk",
+	"content": "a set of tools for manipulation of CSV/TSV files. It is convenient for rapid data investigation and integration into analysis pipelines."
 	},
-	"github/keckert7/codes": {
-	"id": "github/keckert7/codes",
-	"title": "github/keckert7/codes",
-	"url": " https://rseng.github.io/software/repository/github/keckert7/codes",
-	"content": "None"
+	"github/shenwei356/seqkit": {
+	"id": "github/shenwei356/seqkit",
+	"title": "github/shenwei356/seqkit",
+	"url": " https://rseng.github.io/software/repository/github/shenwei356/seqkit",
+	"content": "A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang"
 	},
-	"github/DidierMurilloF/FielDHub": {
-	"id": "github/DidierMurilloF/FielDHub",
-	"title": "github/DidierMurilloF/FielDHub",
-	"url": " https://rseng.github.io/software/repository/github/DidierMurilloF/FielDHub",
-	"content": "FielDHub is an R Shiny design of experiments (DOE) app that aids in the creation of traditional, unreplicated, augmented and partially-replicated designs applied to agriculture, plant breeding, forestry, animal and biological sciences."
+	"github/shenwei356/unikmer": {
+	"id": "github/shenwei356/unikmer",
+	"title": "github/shenwei356/unikmer",
+	"url": " https://rseng.github.io/software/repository/github/shenwei356/unikmer",
+	"content": "Toolkit for k-mer with taxonomic information"
 	},
-	"github/AlanPearl/diffopt": {
-	"id": "github/AlanPearl/diffopt",
-	"title": "github/AlanPearl/diffopt",
-	"url": " https://rseng.github.io/software/repository/github/AlanPearl/diffopt",
-	"content": "Collection of packages aiding in parallelization and optimization of differentiable and many-parameter models"
+	"github/shenwei356/kmcp": {
+	"id": "github/shenwei356/kmcp",
+	"title": "github/shenwei356/kmcp",
+	"url": " https://rseng.github.io/software/repository/github/shenwei356/kmcp",
+	"content": "Accurate metagenomic profiling &amp;&amp; Fast large-scale sequence/genome searching"
 	},
-	"github/Pinlyu3/LRLoop": {
-	"id": "github/Pinlyu3/LRLoop",
-	"title": "github/Pinlyu3/LRLoop",
-	"url": " https://rseng.github.io/software/repository/github/Pinlyu3/LRLoop",
-	"content": "LRLoop"
+	"github/parmoo/parmoo": {
+	"id": "github/parmoo/parmoo",
+	"title": "github/parmoo/parmoo",
+	"url": " https://rseng.github.io/software/repository/github/parmoo/parmoo",
+	"content": "Python library for parallel multiobjective simulation optimization"
 	},
-	"github/dirac-institute/asterogap": {
-	"id": "github/dirac-institute/asterogap",
-	"title": "github/dirac-institute/asterogap",
-	"url": " https://rseng.github.io/software/repository/github/dirac-institute/asterogap",
-	"content": "A Bayesian-based Gaussian Process model set to fit sparsely-sampled asteroid light curves."
+	"github/INCEPTdk/adaptr": {
+	"id": "github/INCEPTdk/adaptr",
+	"title": "github/INCEPTdk/adaptr",
+	"url": " https://rseng.github.io/software/repository/github/INCEPTdk/adaptr",
+	"content": "Adaptive Trial Simulator"
 	},
-	"github/gkulkarni/QLF": {
-	"id": "github/gkulkarni/QLF",
-	"title": "github/gkulkarni/QLF",
-	"url": " https://rseng.github.io/software/repository/github/gkulkarni/QLF",
-	"content": "None"
+	"github/imr-framework/OCTOPUS": {
+	"id": "github/imr-framework/OCTOPUS",
+	"title": "github/imr-framework/OCTOPUS",
+	"url": " https://rseng.github.io/software/repository/github/imr-framework/OCTOPUS",
+	"content": "Off-resonance Correction OPen soUrce Software"
 	},
-	"github/cosmicrays/DRAGON": {
-	"id": "github/cosmicrays/DRAGON",
-	"title": "github/cosmicrays/DRAGON",
-	"url": " https://rseng.github.io/software/repository/github/cosmicrays/DRAGON",
-	"content": "First version of the code - last update Dec 2015"
+	"github/planck-npipe/hillipop": {
+	"id": "github/planck-npipe/hillipop",
+	"title": "github/planck-npipe/hillipop",
+	"url": " https://rseng.github.io/software/repository/github/planck-npipe/hillipop",
+	"content": "A cobaya high-ell likelihood polarized for planck 2020 data (NPIPE release)"
+	},
+	"github/planck-npipe/lollipop": {
+	"id": "github/planck-npipe/lollipop",
+	"title": "github/planck-npipe/lollipop",
+	"url": " https://rseng.github.io/software/repository/github/planck-npipe/lollipop",
+	"content": "A cobaya low-ell likelihood polarized for planck 2020 data (NPIPE release)"
 	},
-	"github/cosmicrays/hermes": {
-	"id": "github/cosmicrays/hermes",
-	"title": "github/cosmicrays/hermes",
-	"url": " https://rseng.github.io/software/repository/github/cosmicrays/hermes",
-	"content": "HERMES is a publicly available computational framework for the line of sight integration over galactic radiative processes which creates sky maps in the HEALPix-compatibile format."
+	"github/AllenInstitute/bmtk": {
+	"id": "github/AllenInstitute/bmtk",
+	"title": "github/AllenInstitute/bmtk",
+	"url": " https://rseng.github.io/software/repository/github/AllenInstitute/bmtk",
+	"content": "Brain Modeling Toolkit"
 	},
-	"github/AbbasAlameer/geoCancerPrognosticDatasetsRetriever": {
-	"id": "github/AbbasAlameer/geoCancerPrognosticDatasetsRetriever",
-	"title": "github/AbbasAlameer/geoCancerPrognosticDatasetsRetriever",
-	"url": " https://rseng.github.io/software/repository/github/AbbasAlameer/geoCancerPrognosticDatasetsRetriever",
-	"content": "GEO Cancer Prognostic Datasets Retriever is a bioinformatics tool for cancer prognostic dataset retrieval from the GEO website."
+	"github/RemoteSensingTools/vSmartMOM.jl": {
+	"id": "github/RemoteSensingTools/vSmartMOM.jl",
+	"title": "github/RemoteSensingTools/vSmartMOM.jl",
+	"url": " https://rseng.github.io/software/repository/github/RemoteSensingTools/vSmartMOM.jl",
+	"content": "A full end-to-end modular software suite for radiative transfer and related atmospheric analysis"
 	},
-	"github/nickelnine37/pykronecker": {
-	"id": "github/nickelnine37/pykronecker",
-	"title": "github/nickelnine37/pykronecker",
-	"url": " https://rseng.github.io/software/repository/github/nickelnine37/pykronecker",
-	"content": "A python library for creating Kronecker Product operators with efficient lazy computation"
+	"github/tinawunderlich/MultichannelGPR": {
+	"id": "github/tinawunderlich/MultichannelGPR",
+	"title": "github/tinawunderlich/MultichannelGPR",
+	"url": " https://rseng.github.io/software/repository/github/tinawunderlich/MultichannelGPR",
+	"content": "A collection of MATLAB scripts for proccesing and visualization of (Multichannel) GPR data"
 	},
-	"github/kgullikson88/Telluric-Fitter": {
-	"id": "github/kgullikson88/Telluric-Fitter",
-	"title": "github/kgullikson88/Telluric-Fitter",
-	"url": " https://rseng.github.io/software/repository/github/kgullikson88/Telluric-Fitter",
-	"content": "Telluric fitting made easy"
+	"github/maxpumperla/hyperas": {
+	"id": "github/maxpumperla/hyperas",
+	"title": "github/maxpumperla/hyperas",
+	"url": " https://rseng.github.io/software/repository/github/maxpumperla/hyperas",
+	"content": "Keras + Hyperopt: A very simple wrapper for convenient hyperparameter optimization"
 	},
-	"github/kgullikson88/Companion-Finder": {
-	"id": "github/kgullikson88/Companion-Finder",
-	"title": "github/kgullikson88/Companion-Finder",
-	"url": " https://rseng.github.io/software/repository/github/kgullikson88/Companion-Finder",
-	"content": "A set of scripts for looking for planets and binary companions in time series spectra"
+	"github/keflavich/HiGal_SEDfitter": {
+	"id": "github/keflavich/HiGal_SEDfitter",
+	"title": "github/keflavich/HiGal_SEDfitter",
+	"url": " https://rseng.github.io/software/repository/github/keflavich/HiGal_SEDfitter",
+	"content": "SED fitting tools for Herschel Hi-Gal data"
 	},
-	"github/gerthmicha/wolbachia-mlst": {
-	"id": "github/gerthmicha/wolbachia-mlst",
-	"title": "github/gerthmicha/wolbachia-mlst",
-	"url": " https://rseng.github.io/software/repository/github/gerthmicha/wolbachia-mlst",
-	"content": "Data from Bleidorn &amp; Gerth (2017) A critical re-evaluation of multilocus sequence typing (MLST) efforts in Wolbachia. https://doi.org/10.1093/femsec/fix163"
+	"github/jspsych/jspsych": {
+	"id": "github/jspsych/jspsych",
+	"title": "github/jspsych/jspsych",
+	"url": " https://rseng.github.io/software/repository/github/jspsych/jspsych",
+	"content": "Create behavioral experiments in a browser using JavaScript"
 	},
-	"github/tiberioap/grav_waldo": {
-	"id": "github/tiberioap/grav_waldo",
-	"title": "github/tiberioap/grav_waldo",
-	"url": " https://rseng.github.io/software/repository/github/tiberioap/grav_waldo",
-	"content": "Waveform anomaly detector"
+	"github/mgm8/pyngham": {
+	"id": "github/mgm8/pyngham",
+	"title": "github/mgm8/pyngham",
+	"url": " https://rseng.github.io/software/repository/github/mgm8/pyngham",
+	"content": "Python library of the NGHam protocol"
 	},
-	"github/andersen-lab/ivar": {
-	"id": "github/andersen-lab/ivar",
-	"title": "github/andersen-lab/ivar",
-	"url": " https://rseng.github.io/software/repository/github/andersen-lab/ivar",
-	"content": "iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing."
+	"github/arvados/arvados": {
+	"id": "github/arvados/arvados",
+	"title": "github/arvados/arvados",
+	"url": " https://rseng.github.io/software/repository/github/arvados/arvados",
+	"content": "An open source platform for managing and analyzing biomedical big data"
 	},
-	"github/andersen-lab/html": {
-	"id": "github/andersen-lab/html",
-	"title": "github/andersen-lab/html",
-	"url": " https://rseng.github.io/software/repository/github/andersen-lab/html",
-	"content": "is a computational package that contains functions broadly useful for viral amplicon-based sequencing."
+	"github/codidact/qpixel": {
+	"id": "github/codidact/qpixel",
+	"title": "github/codidact/qpixel",
+	"url": " https://rseng.github.io/software/repository/github/codidact/qpixel",
+	"content": "Q&amp;A-based community knowledge-sharing software"
 	},
-	"github/andersen-lab/Freyja": {
-	"id": "github/andersen-lab/Freyja",
-	"title": "github/andersen-lab/Freyja",
-	"url": " https://rseng.github.io/software/repository/github/andersen-lab/Freyja",
-	"content": "Depth-weighted De-Mixing "
+	"github/b-pardi/BraTaDio": {
+	"id": "github/b-pardi/BraTaDio",
+	"title": "github/b-pardi/BraTaDio",
+	"url": " https://rseng.github.io/software/repository/github/b-pardi/BraTaDio",
+	"content": "Python based computational for for analyzing quartz crystal microbalance with dissipation (QCM-D) experimental data"
 	},
-	"github/pirl-unc/ace": {
-	"id": "github/pirl-unc/ace",
-	"title": "github/pirl-unc/ace",
-	"url": " https://rseng.github.io/software/repository/github/pirl-unc/ace",
+	"github/spicy-oil/hfs_fit": {
+	"id": "github/spicy-oil/hfs_fit",
+	"title": "github/spicy-oil/hfs_fit",
+	"url": " https://rseng.github.io/software/repository/github/spicy-oil/hfs_fit",
 	"content": "None"
 	},
-	"github/MFaymon/spINAR": {
-	"id": "github/MFaymon/spINAR",
-	"title": "github/MFaymon/spINAR",
-	"url": " https://rseng.github.io/software/repository/github/MFaymon/spINAR",
-	"content": "Semiparametric and parametric estimation and bootstrapping of integer-valued autoregressive (INAR) models."
+	"github/nyusngroup/pyMCZ": {
+	"id": "github/nyusngroup/pyMCZ",
+	"title": "github/nyusngroup/pyMCZ",
+	"url": " https://rseng.github.io/software/repository/github/nyusngroup/pyMCZ",
+	"content": "montecarlo sampling method to calculate metalicity from flux data"
 	},
-	"github/gbouras13/plassembler": {
-	"id": "github/gbouras13/plassembler",
-	"title": "github/gbouras13/plassembler",
-	"url": " https://rseng.github.io/software/repository/github/gbouras13/plassembler",
-	"content": "Program to quickly and accurately assemble plasmids in hybrid sequenced bacterial isolates"
+	"github/jts/sga": {
+	"id": "github/jts/sga",
+	"title": "github/jts/sga",
+	"url": " https://rseng.github.io/software/repository/github/jts/sga",
+	"content": "de novo sequence assembler using string graphs"
 	},
-	"github/sarrvesh/cuFFS": {
-	"id": "github/sarrvesh/cuFFS",
-	"title": "github/sarrvesh/cuFFS",
-	"url": " https://rseng.github.io/software/repository/github/sarrvesh/cuFFS",
-	"content": "A GPU-accelerated Rotation Measure Synthesis code"
+	"github/jts/nanopolish": {
+	"id": "github/jts/nanopolish",
+	"title": "github/jts/nanopolish",
+	"url": " https://rseng.github.io/software/repository/github/jts/nanopolish",
+	"content": "Signal-level algorithms for MinION data"
 	},
-	"github/sgshulman/DGEM": {
-	"id": "github/sgshulman/DGEM",
-	"title": "github/sgshulman/DGEM",
-	"url": " https://rseng.github.io/software/repository/github/sgshulman/DGEM",
-	"content": "A simple three-dimensional dust continuum radiative transfer code for method comparison"
+	"github/RECETOX/recetox-msfinder": {
+	"id": "github/RECETOX/recetox-msfinder",
+	"title": "github/RECETOX/recetox-msfinder",
+	"url": " https://rseng.github.io/software/repository/github/RECETOX/recetox-msfinder",
+	"content": "None"
 	},
-	"github/ajosephy/Clustering": {
-	"id": "github/ajosephy/Clustering",
-	"title": "github/ajosephy/Clustering",
-	"url": " https://rseng.github.io/software/repository/github/ajosephy/Clustering",
-	"content": "Modified RRATrap + new DBSCAN codes to cluster single pulse events."
+	"github/RECETOX/MSMetaEnhancer": {
+	"id": "github/RECETOX/MSMetaEnhancer",
+	"title": "github/RECETOX/MSMetaEnhancer",
+	"url": " https://rseng.github.io/software/repository/github/RECETOX/MSMetaEnhancer",
+	"content": "Tool for mass spectra metadata annotation."
 	},
-	"github/cbrueffer/tophat-recondition": {
-	"id": "github/cbrueffer/tophat-recondition",
-	"title": "github/cbrueffer/tophat-recondition",
-	"url": " https://rseng.github.io/software/repository/github/cbrueffer/tophat-recondition",
-	"content": "Post-processor for TopHat unmapped.bam files making them useable by downstream software."
+	"github/RECETOX/RIAssigner": {
+	"id": "github/RECETOX/RIAssigner",
+	"title": "github/RECETOX/RIAssigner",
+	"url": " https://rseng.github.io/software/repository/github/RECETOX/RIAssigner",
+	"content": "RIAssigner is a python tool for retention index (RI) computation for GC-MS data."
 	},
-	"github/canimus/cuallee": {
-	"id": "github/canimus/cuallee",
-	"title": "github/canimus/cuallee",
-	"url": " https://rseng.github.io/software/repository/github/canimus/cuallee",
-	"content": "Possibly the fastest DataFrame-agnostic quality check library in town."
+	"github/circuitgraph/circuitgraph": {
+	"id": "github/circuitgraph/circuitgraph",
+	"title": "github/circuitgraph/circuitgraph",
+	"url": " https://rseng.github.io/software/repository/github/circuitgraph/circuitgraph",
+	"content": "Tools for working with circuits as graphs in python"
 	},
-	"github/CosmoStatGW/MGCosmoPop": {
-	"id": "github/CosmoStatGW/MGCosmoPop",
-	"title": "github/CosmoStatGW/MGCosmoPop",
-	"url": " https://rseng.github.io/software/repository/github/CosmoStatGW/MGCosmoPop",
-	"content": "Modified Gravity and Cosmology with Binary Black Holes&#39; Population models : hierarchical bayesian method for constraining modified GW propagation and BBH population models with GWs."
+	"github/snystrom/memes": {
+	"id": "github/snystrom/memes",
+	"title": "github/snystrom/memes",
+	"url": " https://rseng.github.io/software/repository/github/snystrom/memes",
+	"content": "An R interface to the MEME Suite"
 	},
-	"github/CosmoStatGW/WF4Py": {
-	"id": "github/CosmoStatGW/WF4Py",
-	"title": "github/CosmoStatGW/WF4Py",
-	"url": " https://rseng.github.io/software/repository/github/CosmoStatGW/WF4Py",
-	"content": "Gravitational waves waveform models in pure Python language"
+	"github/ahmedmoustafa/JAligner": {
+	"id": "github/ahmedmoustafa/JAligner",
+	"title": "github/ahmedmoustafa/JAligner",
+	"url": " https://rseng.github.io/software/repository/github/ahmedmoustafa/JAligner",
+	"content": "Biological Sequence Alignment"
 	},
-	"github/CosmoStatGW/DarkSirensStat": {
-	"id": "github/CosmoStatGW/DarkSirensStat",
-	"title": "github/CosmoStatGW/DarkSirensStat",
-	"url": " https://rseng.github.io/software/repository/github/CosmoStatGW/DarkSirensStat",
-	"content": "Statistical method for measuring modified GW propagation and Hubble parameter with dark sirens and galaxy catalogues"
+	"github/szhorvat/IGraphM": {
+	"id": "github/szhorvat/IGraphM",
+	"title": "github/szhorvat/IGraphM",
+	"url": " https://rseng.github.io/software/repository/github/szhorvat/IGraphM",
+	"content": "IGraph/M is the igraph interface for Mathematica"
 	},
-	"github/CosmoStatGW/gwfast": {
-	"id": "github/CosmoStatGW/gwfast",
-	"title": "github/CosmoStatGW/gwfast",
-	"url": " https://rseng.github.io/software/repository/github/CosmoStatGW/gwfast",
-	"content": "A Fisher information matrix python package for GW detector networks."
+	"github/cheerfuluser/tessreduce": {
+	"id": "github/cheerfuluser/tessreduce",
+	"title": "github/cheerfuluser/tessreduce",
+	"url": " https://rseng.github.io/software/repository/github/cheerfuluser/tessreduce",
+	"content": "Transient focused reduction for TESS data"
 	},
-	"github/hpparvi/ldtk": {
-	"id": "github/hpparvi/ldtk",
-	"title": "github/hpparvi/ldtk",
-	"url": " https://rseng.github.io/software/repository/github/hpparvi/ldtk",
-	"content": "Python toolkit for calculating stellar limb darkening profiles and model-specific coefficients using the stellar atmosphere spectrum library by Husser et al. (2013). Described in Parviainen &amp; Aigrain, MNRAS 453, 3821–3826 (2015)."
+	"github/GeoffDuniam/FITS-Code-Examples": {
+	"id": "github/GeoffDuniam/FITS-Code-Examples",
+	"title": "github/GeoffDuniam/FITS-Code-Examples",
+	"url": " https://rseng.github.io/software/repository/github/GeoffDuniam/FITS-Code-Examples",
+	"content": "Jupyter notes books and code examples for the FITS data modelling paper"
 	},
-	"github/hpparvi/opents": {
-	"id": "github/hpparvi/opents",
-	"title": "github/hpparvi/opents",
-	"url": " https://rseng.github.io/software/repository/github/hpparvi/opents",
-	"content": "Open exoplanet transit search pipeline"
+	"github/spacepy/spacepy": {
+	"id": "github/spacepy/spacepy",
+	"title": "github/spacepy/spacepy",
+	"url": " https://rseng.github.io/software/repository/github/spacepy/spacepy",
+	"content": "Space Science library for Python - contains superposed epoch classes, drift shell tracing, access to magnetic field models, streamline tracing, bootstrap confidence limits, time and coordinate conversions, etc."
 	},
-	"github/hpparvi/PyTransit": {
-	"id": "github/hpparvi/PyTransit",
-	"title": "github/hpparvi/PyTransit",
-	"url": " https://rseng.github.io/software/repository/github/hpparvi/PyTransit",
-	"content": "Fast and easy exoplanet transit light curve modelling."
+	"github/CIRADA-Tools/RM-Tools": {
+	"id": "github/CIRADA-Tools/RM-Tools",
+	"title": "github/CIRADA-Tools/RM-Tools",
+	"url": " https://rseng.github.io/software/repository/github/CIRADA-Tools/RM-Tools",
+	"content": "RM-synthesis, RM-clean and QU-fitting on polarised radio spectra"
 	},
-	"github/hpparvi/MuSCAT2_transit_pipeline": {
-	"id": "github/hpparvi/MuSCAT2_transit_pipeline",
-	"title": "github/hpparvi/MuSCAT2_transit_pipeline",
-	"url": " https://rseng.github.io/software/repository/github/hpparvi/MuSCAT2_transit_pipeline",
-	"content": "MuSCAT2 transit analysis pipeline"
+	"github/COINtoolbox/DRACULA": {
+	"id": "github/COINtoolbox/DRACULA",
+	"title": "github/COINtoolbox/DRACULA",
+	"url": " https://rseng.github.io/software/repository/github/COINtoolbox/DRACULA",
+	"content": "None"
 	},
-	"github/EdgeVPNio/evio": {
-	"id": "github/EdgeVPNio/evio",
-	"title": "github/EdgeVPNio/evio",
-	"url": " https://rseng.github.io/software/repository/github/EdgeVPNio/evio",
-	"content": "Virtualized overlay networking for the fog. The Evio network spans the continuum, from the cloud to the edge, providing a virtual private layer 2 network suitable for edge devices in IoT workloads."
+	"github/COINtoolbox/CosmoPhotoz": {
+	"id": "github/COINtoolbox/CosmoPhotoz",
+	"title": "github/COINtoolbox/CosmoPhotoz",
+	"url": " https://rseng.github.io/software/repository/github/COINtoolbox/CosmoPhotoz",
+	"content": "Photometric redshift estimator utilising Generalized Linear Models."
 	},
-	"github/aboucaud/pypher": {
-	"id": "github/aboucaud/pypher",
-	"title": "github/aboucaud/pypher",
-	"url": " https://rseng.github.io/software/repository/github/aboucaud/pypher",
-	"content": "PSF Homogenization kERnels"
+	"github/COINtoolbox/ActSNClass": {
+	"id": "github/COINtoolbox/ActSNClass",
+	"title": "github/COINtoolbox/ActSNClass",
+	"url": " https://rseng.github.io/software/repository/github/COINtoolbox/ActSNClass",
+	"content": "Active Learning for SN photometric classification"
 	},
-	"github/dsavransky/EXOSIMS": {
-	"id": "github/dsavransky/EXOSIMS",
-	"title": "github/dsavransky/EXOSIMS",
-	"url": " https://rseng.github.io/software/repository/github/dsavransky/EXOSIMS",
-	"content": "Simulator for exoplanet direct imaging space missions"
+	"github/telatin/covtobed": {
+	"id": "github/telatin/covtobed",
+	"title": "github/telatin/covtobed",
+	"url": " https://rseng.github.io/software/repository/github/telatin/covtobed",
+	"content": "⛰ covtobed | Convert the coverage track from a BAM file into a BED file"
 	},
-	"github/matchms/ms2deepscore": {
-	"id": "github/matchms/ms2deepscore",
-	"title": "github/matchms/ms2deepscore",
-	"url": " https://rseng.github.io/software/repository/github/matchms/ms2deepscore",
-	"content": "Deep learning similarity measure for comparing MS/MS spectra with respect to their chemical similarity"
+	"github/telatin/bamtocov": {
+	"id": "github/telatin/bamtocov",
+	"title": "github/telatin/bamtocov",
+	"url": " https://rseng.github.io/software/repository/github/telatin/bamtocov",
+	"content": "🏔  coverage extraction from BAM/CRAM files, supporting targets 📊   "
 	},
-	"github/matchms/matchms": {
-	"id": "github/matchms/matchms",
-	"title": "github/matchms/matchms",
-	"url": " https://rseng.github.io/software/repository/github/matchms/matchms",
-	"content": "Python library for fuzzy comparison of mass spectrum data and other Python objects"
+	"github/telatin/seqfu2": {
+	"id": "github/telatin/seqfu2",
+	"title": "github/telatin/seqfu2",
+	"url": " https://rseng.github.io/software/repository/github/telatin/seqfu2",
+	"content": ":rocket: seqfu - Sequece Fastx Utilities"
 	},
-	"github/markur4/plotastic": {
-	"id": "github/markur4/plotastic",
-	"title": "github/markur4/plotastic",
-	"url": " https://rseng.github.io/software/repository/github/markur4/plotastic",
-	"content": "Streamlining statistical analysis by using plotting keywords in Python."
+	"github/telatin/qax": {
+	"id": "github/telatin/qax",
+	"title": "github/telatin/qax",
+	"url": " https://rseng.github.io/software/repository/github/telatin/qax",
+	"content": "Qiime2 Artifact eXtractor"
 	},
-	"github/joacoh/wise2mbh": {
-	"id": "github/joacoh/wise2mbh",
-	"title": "github/joacoh/wise2mbh",
-	"url": " https://rseng.github.io/software/repository/github/joacoh/wise2mbh",
-	"content": "WISE2MBH is a simple an effective algorithm that uses infrared cataloged data from the Wide-field Infrared Survey Explorer (WISE) to estimate the mass of super massive black holes (SMBH)"
+	"github/ProSolo/prosolo": {
+	"id": "github/ProSolo/prosolo",
+	"title": "github/ProSolo/prosolo",
+	"url": " https://rseng.github.io/software/repository/github/ProSolo/prosolo",
+	"content": "ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos."
 	},
-	"github/0xCoto/Virgo": {
-	"id": "github/0xCoto/Virgo",
-	"title": "github/0xCoto/Virgo",
-	"url": " https://rseng.github.io/software/repository/github/0xCoto/Virgo",
-	"content": "📡 Virgo: A Versatile Spectrometer for Radio Astronomy"
+	"github/HannahMDoherty/ChemGAPP": {
+	"id": "github/HannahMDoherty/ChemGAPP",
+	"title": "github/HannahMDoherty/ChemGAPP",
+	"url": " https://rseng.github.io/software/repository/github/HannahMDoherty/ChemGAPP",
+	"content": "A package and series of Streamlit apps for analysing chemical genomic screen data"
 	},
-	"github/matthiaslee/Xmatch": {
-	"id": "github/matthiaslee/Xmatch",
-	"title": "github/matthiaslee/Xmatch",
-	"url": " https://rseng.github.io/software/repository/github/matthiaslee/Xmatch",
-	"content": "a GPU accelerated astronomic catalog cross-matching tool"
+	"github/OpenBioLink/Explorer": {
+	"id": "github/OpenBioLink/Explorer",
+	"title": "github/OpenBioLink/Explorer",
+	"url": " https://rseng.github.io/software/repository/github/OpenBioLink/Explorer",
+	"content": "None"
 	},
-	"github/liulei/volks2": {
-	"id": "github/liulei/volks2",
-	"title": "github/liulei/volks2",
-	"url": " https://rseng.github.io/software/repository/github/liulei/volks2",
-	"content": "VLBI Observation for single pulse Localization Keen Searcher, 2nd release"
+	"github/JuliaManifolds/Manopt.jl": {
+	"id": "github/JuliaManifolds/Manopt.jl",
+	"title": "github/JuliaManifolds/Manopt.jl",
+	"url": " https://rseng.github.io/software/repository/github/JuliaManifolds/Manopt.jl",
+	"content": "Optimization on Manifolds in Julia"
 	},
-	"github/mfem/mfem": {
-	"id": "github/mfem/mfem",
-	"title": "github/mfem/mfem",
-	"url": " https://rseng.github.io/software/repository/github/mfem/mfem",
-	"content": "Lightweight, general, scalable C++ library for finite element methods"
+	"github/IRCAD/camp": {
+	"id": "github/IRCAD/camp",
+	"title": "github/IRCAD/camp",
+	"url": " https://rseng.github.io/software/repository/github/IRCAD/camp",
+	"content": "C++ multi-purpose reflection library"
 	},
-	"github/EpiVec/TDLM": {
-	"id": "github/EpiVec/TDLM",
-	"title": "github/EpiVec/TDLM",
-	"url": " https://rseng.github.io/software/repository/github/EpiVec/TDLM",
-	"content": ":package: Systematic comparison of trip distribution laws and models"
+	"github/yangyanli/DO-Conv": {
+	"id": "github/yangyanli/DO-Conv",
+	"title": "github/yangyanli/DO-Conv",
+	"url": " https://rseng.github.io/software/repository/github/yangyanli/DO-Conv",
+	"content": "Depthwise Over-parameterized Convolutional Layer"
 	},
-	"github/hishamhm/htop": {
-	"id": "github/hishamhm/htop",
-	"title": "github/hishamhm/htop",
-	"url": " https://rseng.github.io/software/repository/github/hishamhm/htop",
-	"content": "htop is an interactive text-mode process viewer for Unix systems. It aims to be a better &#39;top&#39;."
+	"github/astroboylrx/PLAN": {
+	"id": "github/astroboylrx/PLAN",
+	"title": "github/astroboylrx/PLAN",
+	"url": " https://rseng.github.io/software/repository/github/astroboylrx/PLAN",
+	"content": "PLAN: PLanetesimal ANalyzer"
 	},
-	"github/epiforecasts/covidregionaldata": {
-	"id": "github/epiforecasts/covidregionaldata",
-	"title": "github/epiforecasts/covidregionaldata",
-	"url": " https://rseng.github.io/software/repository/github/epiforecasts/covidregionaldata",
-	"content": "An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wherever available we also provide data on deaths, hospitalisations, and tests. National level data is also supported using a range of data sources as well as linelist data and links to intervention data sets."
+	"github/astroboylrx/Rubble": {
+	"id": "github/astroboylrx/Rubble",
+	"title": "github/astroboylrx/Rubble",
+	"url": " https://rseng.github.io/software/repository/github/astroboylrx/Rubble",
+	"content": "Rubble: an implicit coagulation code for simulating solid size distribution evolution in protoplanetary disks"
 	},
-	"github/ggobi/ggobi": {
-	"id": "github/ggobi/ggobi",
-	"title": "github/ggobi/ggobi",
-	"url": " https://rseng.github.io/software/repository/github/ggobi/ggobi",
-	"content": "High dimensional data vis"
+	"github/bodenlab/GRASP": {
+	"id": "github/bodenlab/GRASP",
+	"title": "github/bodenlab/GRASP",
+	"url": " https://rseng.github.io/software/repository/github/bodenlab/GRASP",
+	"content": "Graphical Representation of Ancestral Sequence Predictions"
 	},
-	"github/yrjia1015/CRISPRCasStack": {
-	"id": "github/yrjia1015/CRISPRCasStack",
-	"title": "github/yrjia1015/CRISPRCasStack",
-	"url": " https://rseng.github.io/software/repository/github/yrjia1015/CRISPRCasStack",
-	"content": "A toolkit for automated identification of Cas proteins and CRISPR-Cas locus"
+	"github/marius311/pypico": {
+	"id": "github/marius311/pypico",
+	"title": "github/marius311/pypico",
+	"url": " https://rseng.github.io/software/repository/github/marius311/pypico",
+	"content": "Quickly compute the CMB powerspectra and matter transfer functions."
 	},
-	"github/ElectionDataAnalysis/electiondata": {
-	"id": "github/ElectionDataAnalysis/electiondata",
-	"title": "github/ElectionDataAnalysis/electiondata",
-	"url": " https://rseng.github.io/software/repository/github/ElectionDataAnalysis/electiondata",
-	"content": "Tools for consolidation and analysis of raw election results from the most reliable sources -- the election agencies themselves."
+	"github/marius311/cosmoslik": {
+	"id": "github/marius311/cosmoslik",
+	"title": "github/marius311/cosmoslik",
+	"url": " https://rseng.github.io/software/repository/github/marius311/cosmoslik",
+	"content": "Cosmology Sampler of LIKelihoods"
 	},
-	"github/isovic/graphmap": {
-	"id": "github/isovic/graphmap",
-	"title": "github/isovic/graphmap",
-	"url": " https://rseng.github.io/software/repository/github/isovic/graphmap",
-	"content": "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:"
+	"github/psi4/psi4": {
+	"id": "github/psi4/psi4",
+	"title": "github/psi4/psi4",
+	"url": " https://rseng.github.io/software/repository/github/psi4/psi4",
+	"content": "Open-Source Quantum Chemistry – an electronic structure package in C++ driven by Python"
 	},
-	"github/ntoles/tristan-mp-pitp": {
-	"id": "github/ntoles/tristan-mp-pitp",
-	"title": "github/ntoles/tristan-mp-pitp",
-	"url": " https://rseng.github.io/software/repository/github/ntoles/tristan-mp-pitp",
-	"content": "Particle-in-cell code TRISTAN-MP"
+	"github/UoMMIB/TFBMiner": {
+	"id": "github/UoMMIB/TFBMiner",
+	"title": "github/UoMMIB/TFBMiner",
+	"url": " https://rseng.github.io/software/repository/github/UoMMIB/TFBMiner",
+	"content": "TFBMiner is a data acquisition and analysis pipeline for the rapid identification of putative transcription factor-based biosensors."
 	},
-	"github/NctuICLab/PredCRP": {
-	"id": "github/NctuICLab/PredCRP",
-	"title": "github/NctuICLab/PredCRP",
-	"url": " https://rseng.github.io/software/repository/github/NctuICLab/PredCRP",
-	"content": "Predicting the regulatory role of CRP transcription factor in Escherichia coli "
+	"github/Yida-Lin/libxdf": {
+	"id": "github/Yida-Lin/libxdf",
+	"title": "github/Yida-Lin/libxdf",
+	"url": " https://rseng.github.io/software/repository/github/Yida-Lin/libxdf",
+	"content": "C++ library for loading XDF files"
 	},
-	"github/jameschapman19/cca_zoo": {
-	"id": "github/jameschapman19/cca_zoo",
-	"title": "github/jameschapman19/cca_zoo",
-	"url": " https://rseng.github.io/software/repository/github/jameschapman19/cca_zoo",
-	"content": "Canonical Correlation Analysis Zoo: A collection of Regularized, Deep Learning based, Kernel, and Probabilistic methods in a scikit-learn style framework"
+	"github/samhforbes/PupillometryR": {
+	"id": "github/samhforbes/PupillometryR",
+	"title": "github/samhforbes/PupillometryR",
+	"url": " https://rseng.github.io/software/repository/github/samhforbes/PupillometryR",
+	"content": "An R package for preparing and analysing pupillometry data"
 	},
-	"github/minkailin/stratsi": {
-	"id": "github/minkailin/stratsi",
-	"title": "github/minkailin/stratsi",
-	"url": " https://rseng.github.io/software/repository/github/minkailin/stratsi",
-	"content": "stratified streaming instability"
+	"github/scikit-image/scikit-image": {
+	"id": "github/scikit-image/scikit-image",
+	"title": "github/scikit-image/scikit-image",
+	"url": " https://rseng.github.io/software/repository/github/scikit-image/scikit-image",
+	"content": "Image processing in Python"
 	},
-	"github/jiujiezz/tsnad": {
-	"id": "github/jiujiezz/tsnad",
-	"title": "github/jiujiezz/tsnad",
-	"url": " https://rseng.github.io/software/repository/github/jiujiezz/tsnad",
-	"content": "Detecting somatic mutations and predicting tumor-specific neo-antigens"
+	"github/EhsanGharibNezhad/TelescopeML": {
+	"id": "github/EhsanGharibNezhad/TelescopeML",
+	"title": "github/EhsanGharibNezhad/TelescopeML",
+	"url": " https://rseng.github.io/software/repository/github/EhsanGharibNezhad/TelescopeML",
+	"content": "Deep Convolutional Neural Networks and Machine Learning Models for Analyzing Stellar and Exoplanetary Telescope Spectra"
 	},
-	"github/cdanielmachado/carveme": {
-	"id": "github/cdanielmachado/carveme",
-	"title": "github/cdanielmachado/carveme",
-	"url": " https://rseng.github.io/software/repository/github/cdanielmachado/carveme",
-	"content": "CarveMe: genome-scale metabolic model reconstruction"
+	"github/biolab-unige/nifti2dicom": {
+	"id": "github/biolab-unige/nifti2dicom",
+	"title": "github/biolab-unige/nifti2dicom",
+	"url": " https://rseng.github.io/software/repository/github/biolab-unige/nifti2dicom",
+	"content": "Convert 3D NIfTI images (and other formats supported by ITK) to DICOM 2D series"
+	},
+	"github/nwchemgit/nwchem": {
+	"id": "github/nwchemgit/nwchem",
+	"title": "github/nwchemgit/nwchem",
+	"url": " https://rseng.github.io/software/repository/github/nwchemgit/nwchem",
+	"content": "NWChem: Open Source High-Performance Computational Chemistry"
+	},
+	"github/felixbosco/KeplerFit": {
+	"id": "github/felixbosco/KeplerFit",
+	"title": "github/felixbosco/KeplerFit",
+	"url": " https://rseng.github.io/software/repository/github/felixbosco/KeplerFit",
+	"content": "A small piece of code to fit a Keplerian velocity distribution model to position-velocity data"
 	},
-	"github/cdanielmachado/reframed": {
-	"id": "github/cdanielmachado/reframed",
-	"title": "github/cdanielmachado/reframed",
-	"url": " https://rseng.github.io/software/repository/github/cdanielmachado/reframed",
-	"content": "ReFramed: metabolic modeling package"
+	"github/mirochaj/sedop": {
+	"id": "github/mirochaj/sedop",
+	"title": "github/mirochaj/sedop",
+	"url": " https://rseng.github.io/software/repository/github/mirochaj/sedop",
+	"content": "Code for optimizing discrete versions of common SEDs."
 	},
-	"github/blankhaar/PORTAL": {
-	"id": "github/blankhaar/PORTAL",
-	"title": "github/blankhaar/PORTAL",
-	"url": " https://rseng.github.io/software/repository/github/blankhaar/PORTAL",
-	"content": "POlarized Radiative Transfer Adapted to Lines"
+	"github/mirochaj/ares": {
+	"id": "github/mirochaj/ares",
+	"title": "github/mirochaj/ares",
+	"url": " https://rseng.github.io/software/repository/github/mirochaj/ares",
+	"content": "Accelerated Reionization Era Simulations"
 	},
-	"github/venkateshgopinath/FAlCon-DNS": {
-	"id": "github/venkateshgopinath/FAlCon-DNS",
-	"title": "github/venkateshgopinath/FAlCon-DNS",
-	"url": " https://rseng.github.io/software/repository/github/venkateshgopinath/FAlCon-DNS",
-	"content": "FAlCon-DNS (Framework of time schemes for Direct Numerical Simulation of Annular Convection) is a code to solve 2D thermal convection in an annulus. It has a suite of IMEX time integration schemes."
+	"github/grburgess/ronswanson": {
+	"id": "github/grburgess/ronswanson",
+	"title": "github/grburgess/ronswanson",
+	"url": " https://rseng.github.io/software/repository/github/grburgess/ronswanson",
+	"content": "Ron Swanson builds tables for 3ML"
 	},
-	"github/nbellomo/Multi_CLASS": {
-	"id": "github/nbellomo/Multi_CLASS",
-	"title": "github/nbellomo/Multi_CLASS",
-	"url": " https://rseng.github.io/software/repository/github/nbellomo/Multi_CLASS",
-	"content": "Public repository of the Multi_CLASS code"
+	"github/grburgess/popsynth": {
+	"id": "github/grburgess/popsynth",
+	"title": "github/grburgess/popsynth",
+	"url": " https://rseng.github.io/software/repository/github/grburgess/popsynth",
+	"content": "A generic flux/parameter population synthesis code"
 	},
-	"github/eScatter/pyelsepa": {
-	"id": "github/eScatter/pyelsepa",
-	"title": "github/eScatter/pyelsepa",
-	"url": " https://rseng.github.io/software/repository/github/eScatter/pyelsepa",
-	"content": "A Python wrapper for ELSEPA"
+	"github/canimus/cuallee": {
+	"id": "github/canimus/cuallee",
+	"title": "github/canimus/cuallee",
+	"url": " https://rseng.github.io/software/repository/github/canimus/cuallee",
+	"content": "Possibly the fastest DataFrame-agnostic quality check library in town."
 	},
-	"github/mlower/rmnest": {
-	"id": "github/mlower/rmnest",
-	"title": "github/mlower/rmnest",
-	"url": " https://rseng.github.io/software/repository/github/mlower/rmnest",
-	"content": "A standard (and generalised) rotation measures fitting package written in Python."
+	"github/mdruett/COCOPLOT": {
+	"id": "github/mdruett/COCOPLOT",
+	"title": "github/mdruett/COCOPLOT",
+	"url": " https://rseng.github.io/software/repository/github/mdruett/COCOPLOT",
+	"content": "COlor COllapsed PLOTting quick-look and context image software is designed to convey spectral profile information from all of the spatial pixels in a 3D datacube as a single image, using color."
 	},
-	"github/GreiffLab/immuneREF": {
-	"id": "github/GreiffLab/immuneREF",
-	"title": "github/GreiffLab/immuneREF",
-	"url": " https://rseng.github.io/software/repository/github/GreiffLab/immuneREF",
-	"content": "None"
+	"github/soedinglab/mmseqs2": {
+	"id": "github/soedinglab/mmseqs2",
+	"title": "github/soedinglab/mmseqs2",
+	"url": " https://rseng.github.io/software/repository/github/soedinglab/mmseqs2",
+	"content": "MMseqs2: ultra fast and sensitive search and clustering suite"
 	},
-	"github/paulmorio/gincco": {
-	"id": "github/paulmorio/gincco",
-	"title": "github/paulmorio/gincco",
-	"url": " https://rseng.github.io/software/repository/github/paulmorio/gincco",
-	"content": "Source code for GINCCo Paper"
+	"github/soedinglab/metaeuk": {
+	"id": "github/soedinglab/metaeuk",
+	"title": "github/soedinglab/metaeuk",
+	"url": " https://rseng.github.io/software/repository/github/soedinglab/metaeuk",
+	"content": "MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics"
 	},
-	"github/keck-datareductionpipelines/MosfireDRP": {
-	"id": "github/keck-datareductionpipelines/MosfireDRP",
-	"title": "github/keck-datareductionpipelines/MosfireDRP",
-	"url": " https://rseng.github.io/software/repository/github/keck-datareductionpipelines/MosfireDRP",
-	"content": "None"
+	"github/soedinglab/plass": {
+	"id": "github/soedinglab/plass",
+	"title": "github/soedinglab/plass",
+	"url": " https://rseng.github.io/software/repository/github/soedinglab/plass",
+	"content": "Protein-Level ASSembler (PLASS): sensitive and precise protein assembler"
 	},
-	"github/fakedrtom/oncogemini": {
-	"id": "github/fakedrtom/oncogemini",
-	"title": "github/fakedrtom/oncogemini",
-	"url": " https://rseng.github.io/software/repository/github/fakedrtom/oncogemini",
-	"content": "None"
+	"github/soedinglab/hh-suite": {
+	"id": "github/soedinglab/hh-suite",
+	"title": "github/soedinglab/hh-suite",
+	"url": " https://rseng.github.io/software/repository/github/soedinglab/hh-suite",
+	"content": "Remote protein homology detection suite."
 	},
-	"github/pyro-ppl/pyro": {
-	"id": "github/pyro-ppl/pyro",
-	"title": "github/pyro-ppl/pyro",
-	"url": " https://rseng.github.io/software/repository/github/pyro-ppl/pyro",
-	"content": "Deep universal probabilistic programming with Python and PyTorch"
+	"github/soedinglab/spacepharer": {
+	"id": "github/soedinglab/spacepharer",
+	"title": "github/soedinglab/spacepharer",
+	"url": " https://rseng.github.io/software/repository/github/soedinglab/spacepharer",
+	"content": "SpacePHARER CRISPR Spacer Phage-Host pAiRs findER"
 	},
-	"github/maximewack/viroCapt": {
-	"id": "github/maximewack/viroCapt",
-	"title": "github/maximewack/viroCapt",
-	"url": " https://rseng.github.io/software/repository/github/maximewack/viroCapt",
-	"content": "None"
+	"github/soedinglab/MMseqs2": {
+	"id": "github/soedinglab/MMseqs2",
+	"title": "github/soedinglab/MMseqs2",
+	"url": " https://rseng.github.io/software/repository/github/soedinglab/MMseqs2",
+	"content": "MMseqs2: ultra fast and sensitive search and clustering suite"
 	},
-	"github/tomasstolker/ARTES": {
-	"id": "github/tomasstolker/ARTES",
-	"title": "github/tomasstolker/ARTES",
-	"url": " https://rseng.github.io/software/repository/github/tomasstolker/ARTES",
-	"content": "Radiative transfer of polarized light in 3D exoplanet atmospheres"
+	"github/JulianKarlBauer/mechkit": {
+	"id": "github/JulianKarlBauer/mechkit",
+	"title": "github/JulianKarlBauer/mechkit",
+	"url": " https://rseng.github.io/software/repository/github/JulianKarlBauer/mechkit",
+	"content": "Continuum mechanics toolkit"
 	},
-	"github/tomasstolker/pycrires": {
-	"id": "github/tomasstolker/pycrires",
-	"title": "github/tomasstolker/pycrires",
-	"url": " https://rseng.github.io/software/repository/github/tomasstolker/pycrires",
-	"content": "Data reduction pipeline for VLT/CRIRES+"
+	"github/msolpera/pyUPMASK": {
+	"id": "github/msolpera/pyUPMASK",
+	"title": "github/msolpera/pyUPMASK",
+	"url": " https://rseng.github.io/software/repository/github/msolpera/pyUPMASK",
+	"content": "Unsupervised clustering method for stellar clusters."
 	},
-	"github/tomasstolker/species": {
-	"id": "github/tomasstolker/species",
-	"title": "github/tomasstolker/species",
-	"url": " https://rseng.github.io/software/repository/github/tomasstolker/species",
-	"content": "Toolkit for atmospheric characterization of directly imaged exoplanets"
+	"github/phenomecentre/nPYc-Toolbox": {
+	"id": "github/phenomecentre/nPYc-Toolbox",
+	"title": "github/phenomecentre/nPYc-Toolbox",
+	"url": " https://rseng.github.io/software/repository/github/phenomecentre/nPYc-Toolbox",
+	"content": "The nPYc-Toolbox defines objects for representing, and implements functions to manipulate and display, metabolic profiling datasets."
 	},
-	"github/ELeeAstro/gCMCRT": {
-	"id": "github/ELeeAstro/gCMCRT",
-	"title": "github/ELeeAstro/gCMCRT",
-	"url": " https://rseng.github.io/software/repository/github/ELeeAstro/gCMCRT",
-	"content": "3D Monte Carlo Radiative Transfer for exoplanet atmospheres using GPUs."
+	"github/interactivereport/OmicsView0": {
+	"id": "github/interactivereport/OmicsView0",
+	"title": "github/interactivereport/OmicsView0",
+	"url": " https://rseng.github.io/software/repository/github/interactivereport/OmicsView0",
+	"content": "None"
 	},
-	"github/FabianPlum/OmniTrax": {
-	"id": "github/FabianPlum/OmniTrax",
-	"title": "github/FabianPlum/OmniTrax",
-	"url": " https://rseng.github.io/software/repository/github/FabianPlum/OmniTrax",
-	"content": "Deep learning-driven multi animal tracking and pose estimation add-on for Blender"
+	"github/interactivereport/scRNASequest": {
+	"id": "github/interactivereport/scRNASequest",
+	"title": "github/interactivereport/scRNASequest",
+	"url": " https://rseng.github.io/software/repository/github/interactivereport/scRNASequest",
+	"content": "scRNASequest: an ecosystem of scRNA-seq analysis, visualization and publishing"
 	},
-	"github/graphnet-team/graphnet": {
-	"id": "github/graphnet-team/graphnet",
-	"title": "github/graphnet-team/graphnet",
-	"url": " https://rseng.github.io/software/repository/github/graphnet-team/graphnet",
-	"content": "Graph neural networks for neutrino telescope event reconstruction"
+	"github/jakelangham/kestrel": {
+	"id": "github/jakelangham/kestrel",
+	"title": "github/jakelangham/kestrel",
+	"url": " https://rseng.github.io/software/repository/github/jakelangham/kestrel",
+	"content": "Software for simulations of sediment-laden Earth surface flows"
 	},
-	"github/AstroAccelerateOrg/astro-accelerate": {
-	"id": "github/AstroAccelerateOrg/astro-accelerate",
-	"title": "github/AstroAccelerateOrg/astro-accelerate",
-	"url": " https://rseng.github.io/software/repository/github/AstroAccelerateOrg/astro-accelerate",
-	"content": "AstroAccelerate is a many-core accelerated software package for processing time-domain radio-astronomy data."
+	"github/EdgeVPNio/evio": {
+	"id": "github/EdgeVPNio/evio",
+	"title": "github/EdgeVPNio/evio",
+	"url": " https://rseng.github.io/software/repository/github/EdgeVPNio/evio",
+	"content": "Virtualized overlay networking for the fog. The Evio network spans the continuum, from the cloud to the edge, providing a virtual private layer 2 network suitable for edge devices in IoT workloads."
 	},
-	"github/aviadpi/SparseBLS": {
-	"id": "github/aviadpi/SparseBLS",
-	"title": "github/aviadpi/SparseBLS",
-	"url": " https://rseng.github.io/software/repository/github/aviadpi/SparseBLS",
-	"content": "BoxFitting Least Squares - Implementation for Sparse data"
+	"github/ParaFly/ParaFly": {
+	"id": "github/ParaFly/ParaFly",
+	"title": "github/ParaFly/ParaFly",
+	"url": " https://rseng.github.io/software/repository/github/ParaFly/ParaFly",
+	"content": "ParaFly - parallel cmd processing utility"
 	},
-	"github/seisman/HinetPy": {
-	"id": "github/seisman/HinetPy",
-	"title": "github/seisman/HinetPy",
-	"url": " https://rseng.github.io/software/repository/github/seisman/HinetPy",
-	"content": "A Python package for accessing and processing NIED Hi-net seismic data."
+	"github/VicidominiLab/BrightEyes-MCS": {
+	"id": "github/VicidominiLab/BrightEyes-MCS",
+	"title": "github/VicidominiLab/BrightEyes-MCS",
+	"url": " https://rseng.github.io/software/repository/github/VicidominiLab/BrightEyes-MCS",
+	"content": "BrightEyes Microscope Control Suite"
 	},
-	"github/abs-tudelft/variant-calling-at-scale": {
-	"id": "github/abs-tudelft/variant-calling-at-scale",
-	"title": "github/abs-tudelft/variant-calling-at-scale",
-	"url": " https://rseng.github.io/software/repository/github/abs-tudelft/variant-calling-at-scale",
-	"content": "Scalable and Efficient Variant Calling on Apache Spark cluster"
+	"github/agreenbaum/ImPlaneIA": {
+	"id": "github/agreenbaum/ImPlaneIA",
+	"title": "github/agreenbaum/ImPlaneIA",
+	"url": " https://rseng.github.io/software/repository/github/agreenbaum/ImPlaneIA",
+	"content": "Tools for fitting (image plane fringes), calibrating, and analyzing NRM data across multiple instruments and modes"
 	},
-	"github/mtholder/ncl": {
-	"id": "github/mtholder/ncl",
-	"title": "github/mtholder/ncl",
-	"url": " https://rseng.github.io/software/repository/github/mtholder/ncl",
-	"content": "Nexus Class Library "
+	"github/agreenbaum/gsgs": {
+	"id": "github/agreenbaum/gsgs",
+	"title": "github/agreenbaum/gsgs",
+	"url": " https://rseng.github.io/software/repository/github/agreenbaum/gsgs",
+	"content": "gsgs does phase retrieval on images given an estimate of the pupil phase, like one from a non-redundant mask "
 	},
-	"github/alphaparrot/ExoPlaSim": {
-	"id": "github/alphaparrot/ExoPlaSim",
-	"title": "github/alphaparrot/ExoPlaSim",
-	"url": " https://rseng.github.io/software/repository/github/alphaparrot/ExoPlaSim",
-	"content": "Exoplanet Planet Simulator (PlaSim extended for different planet types (including tidally-locked) and evolution on geological timescales--glaciers and carbon cycle)"
+	"github/STOmics/EAGS": {
+	"id": "github/STOmics/EAGS",
+	"title": "github/STOmics/EAGS",
+	"url": " https://rseng.github.io/software/repository/github/STOmics/EAGS",
+	"content": "EAGS:efficient and adaptive Gaussian smoothing"
 	},
-	"github/gpertea/cdbfasta": {
-	"id": "github/gpertea/cdbfasta",
-	"title": "github/gpertea/cdbfasta",
-	"url": " https://rseng.github.io/software/repository/github/gpertea/cdbfasta",
-	"content": "Constant DataBase tools for indexing and retrieving records from multi-FASTA or similarly structured files"
+	"github/Weeks-UNC/RingMapper": {
+	"id": "github/Weeks-UNC/RingMapper",
+	"title": "github/Weeks-UNC/RingMapper",
+	"url": " https://rseng.github.io/software/repository/github/Weeks-UNC/RingMapper",
+	"content": "Code for performing RING-MaP and PAIR-MaP analysis"
 	},
-	"github/gpertea/gclib": {
-	"id": "github/gpertea/gclib",
-	"title": "github/gpertea/gclib",
-	"url": " https://rseng.github.io/software/repository/github/gpertea/gclib",
-	"content": "GCLib - Genomic C++ library of reusable code for bioinformatics projects"
+	"github/LCOGT/banzai": {
+	"id": "github/LCOGT/banzai",
+	"title": "github/LCOGT/banzai",
+	"url": " https://rseng.github.io/software/repository/github/LCOGT/banzai",
+	"content": "Beautiful Algorithms to Normalize Zillions of Astronomical Images"
 	},
-	"github/AnthonyOfSeattle/pyAscoreValidation": {
-	"id": "github/AnthonyOfSeattle/pyAscoreValidation",
-	"title": "github/AnthonyOfSeattle/pyAscoreValidation",
-	"url": " https://rseng.github.io/software/repository/github/AnthonyOfSeattle/pyAscoreValidation",
-	"content": "Validation experiments for the pyAscore python package."
+	"github/LCOGT/banzai-nres": {
+	"id": "github/LCOGT/banzai-nres",
+	"title": "github/LCOGT/banzai-nres",
+	"url": " https://rseng.github.io/software/repository/github/LCOGT/banzai-nres",
+	"content": "BANZAI Data Reduction Pipeline for NRES"
 	},
-	"github/JuliaHEP/UnROOT.jl": {
-	"id": "github/JuliaHEP/UnROOT.jl",
-	"title": "github/JuliaHEP/UnROOT.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaHEP/UnROOT.jl",
-	"content": "Native Julia I/O package to work with CERN ROOT files"
+	"github/LCOGT/neoexchange": {
+	"id": "github/LCOGT/neoexchange",
+	"title": "github/LCOGT/neoexchange",
+	"url": " https://rseng.github.io/software/repository/github/LCOGT/neoexchange",
+	"content": "NEO observing portal"
 	},
-	"github/hongwanliu/DarkHistory": {
-	"id": "github/hongwanliu/DarkHistory",
-	"title": "github/hongwanliu/DarkHistory",
-	"url": " https://rseng.github.io/software/repository/github/hongwanliu/DarkHistory",
-	"content": "A code package for calculating modified cosmic ionization and thermal histories with dark matter and other exotic energy injections"
+	"github/tdrobinson/coronagraph_noise": {
+	"id": "github/tdrobinson/coronagraph_noise",
+	"title": "github/tdrobinson/coronagraph_noise",
+	"url": " https://rseng.github.io/software/repository/github/tdrobinson/coronagraph_noise",
+	"content": "Coronagraph noise modeling routines"
 	},
-	"github/YihanWangAstro/SpaceHub": {
-	"id": "github/YihanWangAstro/SpaceHub",
-	"title": "github/YihanWangAstro/SpaceHub",
-	"url": " https://rseng.github.io/software/repository/github/YihanWangAstro/SpaceHub",
-	"content": "SpaceHub"
+	"github/hiddenSymmetries/simsopt": {
+	"id": "github/hiddenSymmetries/simsopt",
+	"title": "github/hiddenSymmetries/simsopt",
+	"url": " https://rseng.github.io/software/repository/github/hiddenSymmetries/simsopt",
+	"content": "Simons Stellarator Optimizer Code"
 	},
-	"github/LoganAMorrison/Hazma": {
-	"id": "github/LoganAMorrison/Hazma",
-	"title": "github/LoganAMorrison/Hazma",
-	"url": " https://rseng.github.io/software/repository/github/LoganAMorrison/Hazma",
-	"content": "Python package for computing indirect detection constraints on sub-GeV dark matter."
+	"github/jacobblum/simDRIFT": {
+	"id": "github/jacobblum/simDRIFT",
+	"title": "github/jacobblum/simDRIFT",
+	"url": " https://rseng.github.io/software/repository/github/jacobblum/simDRIFT",
+	"content": "simDRIFT - A software package for massively parallel forward simulation of Pulsed Gradient Spin Echo diffusion weighted MRI experiments on biophysically accurate tissue systems. "
 	},
-	"github/LoganAMorrison/blackthorn": {
-	"id": "github/LoganAMorrison/blackthorn",
-	"title": "github/LoganAMorrison/blackthorn",
-	"url": " https://rseng.github.io/software/repository/github/LoganAMorrison/blackthorn",
-	"content": "Project for computing spectra from right-handed neutrino decays"
+	"github/winger/hawking_net": {
+	"id": "github/winger/hawking_net",
+	"title": "github/winger/hawking_net",
+	"url": " https://rseng.github.io/software/repository/github/winger/hawking_net",
+	"content": "None"
 	},
-	"github/dmey/synthia": {
-	"id": "github/dmey/synthia",
-	"title": "github/dmey/synthia",
-	"url": " https://rseng.github.io/software/repository/github/dmey/synthia",
-	"content": "📈 🐍 Multidimensional synthetic data generation in Python"
+	"github/alexander-mead/HMcode": {
+	"id": "github/alexander-mead/HMcode",
+	"title": "github/alexander-mead/HMcode",
+	"url": " https://rseng.github.io/software/repository/github/alexander-mead/HMcode",
+	"content": "Augmented halo model for accurate non-linear matter power spectrum calculations"
 	},
-	"github/mommermi/photometrypipeline": {
-	"id": "github/mommermi/photometrypipeline",
-	"title": "github/mommermi/photometrypipeline",
-	"url": " https://rseng.github.io/software/repository/github/mommermi/photometrypipeline",
-	"content": "automated photometry pipeline for small to medium-sized observatories"
+	"github/alexander-mead/collapse": {
+	"id": "github/alexander-mead/collapse",
+	"title": "github/alexander-mead/collapse",
+	"url": " https://rseng.github.io/software/repository/github/alexander-mead/collapse",
+	"content": "Spherical-collapse model code"
 	},
-	"github/jradcliffe5/multi_self_cal": {
-	"id": "github/jradcliffe5/multi_self_cal",
-	"title": "github/jradcliffe5/multi_self_cal",
-	"url": " https://rseng.github.io/software/repository/github/jradcliffe5/multi_self_cal",
-	"content": "Multi-Source Self-Calibration is a Parseltongue (Kettenis et al. 2012) script which provides an extra calibration for VLBI data sets that image multiple target source within one observation. More information is in the README &amp; paper Radcliffe et. al 2016. If you use this script please reference Radcliffe et al. 2016 which is the paper that accompanies this release."
+	"github/alexander-mead/pyhalomodel": {
+	"id": "github/alexander-mead/pyhalomodel",
+	"title": "github/alexander-mead/pyhalomodel",
+	"url": " https://rseng.github.io/software/repository/github/alexander-mead/pyhalomodel",
+	"content": "A pure Python halo-model implementation for power spectra of any large-scale structure tracer combination."
 	},
-	"github/Cosmoglobe/zodipy": {
-	"id": "github/Cosmoglobe/zodipy",
-	"title": "github/Cosmoglobe/zodipy",
-	"url": " https://rseng.github.io/software/repository/github/Cosmoglobe/zodipy",
-	"content": "Zodiacal emission simulations in timestreams or HEALPix for solar system observers."
+	"github/zhoux85/scAdapt": {
+	"id": "github/zhoux85/scAdapt",
+	"title": "github/zhoux85/scAdapt",
+	"url": " https://rseng.github.io/software/repository/github/zhoux85/scAdapt",
+	"content": "None"
 	},
-	"github/BiaPyX/BiaPy": {
-	"id": "github/BiaPyX/BiaPy",
-	"title": "github/BiaPyX/BiaPy",
-	"url": " https://rseng.github.io/software/repository/github/BiaPyX/BiaPy",
-	"content": "Open source Python library for building bioimage analysis pipelines"
+	"github/ITA-Solar/rh": {
+	"id": "github/ITA-Solar/rh",
+	"title": "github/ITA-Solar/rh",
+	"url": " https://rseng.github.io/software/repository/github/ITA-Solar/rh",
+	"content": "RH 1.5D"
 	},
-	"github/Vini2/GraphBin": {
-	"id": "github/Vini2/GraphBin",
-	"title": "github/Vini2/GraphBin",
-	"url": " https://rseng.github.io/software/repository/github/Vini2/GraphBin",
-	"content": "GraphBin: Refined binning of metagenomic contigs using assembly graphs"
+	"github/daniel-muthukrishna/astrodash": {
+	"id": "github/daniel-muthukrishna/astrodash",
+	"title": "github/daniel-muthukrishna/astrodash",
+	"url": " https://rseng.github.io/software/repository/github/daniel-muthukrishna/astrodash",
+	"content": "Deep learning for the automated spectral classification of supernovae"
 	},
-	"github/mwalmsley/zoobot": {
-	"id": "github/mwalmsley/zoobot",
-	"title": "github/mwalmsley/zoobot",
-	"url": " https://rseng.github.io/software/repository/github/mwalmsley/zoobot",
-	"content": "Classifies galaxy morphology with Bayesian CNN"
+	"github/copasi/basico": {
+	"id": "github/copasi/basico",
+	"title": "github/copasi/basico",
+	"url": " https://rseng.github.io/software/repository/github/copasi/basico",
+	"content": "A simplified python interface to COPASI."
 	},
-	"github/eWaterCycle/jupyterlab_thredds": {
-	"id": "github/eWaterCycle/jupyterlab_thredds",
-	"title": "github/eWaterCycle/jupyterlab_thredds",
-	"url": " https://rseng.github.io/software/repository/github/eWaterCycle/jupyterlab_thredds",
-	"content": "JupyterLab dataset browser for THREDDS catalog"
+	"github/copasi/COPASI": {
+	"id": "github/copasi/COPASI",
+	"title": "github/copasi/COPASI",
+	"url": " https://rseng.github.io/software/repository/github/copasi/COPASI",
+	"content": "COPASI is a software application for simulation and analysis of biochemical networks and their dynamics."
 	},
-	"github/eWaterCycle/eWaterleaf": {
-	"id": "github/eWaterCycle/eWaterleaf",
-	"title": "github/eWaterCycle/eWaterleaf",
-	"url": " https://rseng.github.io/software/repository/github/eWaterCycle/eWaterleaf",
-	"content": "Simple leaflet-based visualization for the eWaterCycle project"
+	"github/mathopt/DynamicOED.jl": {
+	"id": "github/mathopt/DynamicOED.jl",
+	"title": "github/mathopt/DynamicOED.jl",
+	"url": " https://rseng.github.io/software/repository/github/mathopt/DynamicOED.jl",
+	"content": "Optimal experimental design of ODE and DAE systems in julia"
 	},
-	"github/eWaterCycle/experiment-launcher": {
-	"id": "github/eWaterCycle/experiment-launcher",
-	"title": "github/eWaterCycle/experiment-launcher",
-	"url": " https://rseng.github.io/software/repository/github/eWaterCycle/experiment-launcher",
-	"content": "eWaterCycle Experiment Launcher"
+	"github/dcouvin/CRISPRCasFinder": {
+	"id": "github/dcouvin/CRISPRCasFinder",
+	"title": "github/dcouvin/CRISPRCasFinder",
+	"url": " https://rseng.github.io/software/repository/github/dcouvin/CRISPRCasFinder",
+	"content": "A Perl script allowing to identify CRISPR arrays and associated Cas proteins from DNA sequences"
 	},
-	"github/eWaterCycle/setup-grpc": {
-	"id": "github/eWaterCycle/setup-grpc",
-	"title": "github/eWaterCycle/setup-grpc",
-	"url": " https://rseng.github.io/software/repository/github/eWaterCycle/setup-grpc",
-	"content": "GitHub Action to setup gRPC C++ environment"
+	"github/kbarbary/sep": {
+	"id": "github/kbarbary/sep",
+	"title": "github/kbarbary/sep",
+	"url": " https://rseng.github.io/software/repository/github/kbarbary/sep",
+	"content": "Python and C library for source extraction and photometry"
 	},
-	"github/eWaterCycle/grpc4bmi": {
-	"id": "github/eWaterCycle/grpc4bmi",
-	"title": "github/eWaterCycle/grpc4bmi",
-	"url": " https://rseng.github.io/software/repository/github/eWaterCycle/grpc4bmi",
-	"content": "gRPC wrapper for model with a Basic modeling interface"
+	"github/kbarbary/nestle": {
+	"id": "github/kbarbary/nestle",
+	"title": "github/kbarbary/nestle",
+	"url": " https://rseng.github.io/software/repository/github/kbarbary/nestle",
+	"content": "Pure Python, MIT-licensed implementation of nested sampling algorithms for evaluating Bayesian evidence."
 	},
-	"github/eWaterCycle/ewatercycle": {
-	"id": "github/eWaterCycle/ewatercycle",
-	"title": "github/eWaterCycle/ewatercycle",
-	"url": " https://rseng.github.io/software/repository/github/eWaterCycle/ewatercycle",
-	"content": "Python utilities for running hydrological models"
+	"github/kbarbary/extinction": {
+	"id": "github/kbarbary/extinction",
+	"title": "github/kbarbary/extinction",
+	"url": " https://rseng.github.io/software/repository/github/kbarbary/extinction",
+	"content": "Fast interstellar dust extinction laws in Python"
 	},
-	"github/eWaterCycle/setup-singularity": {
-	"id": "github/eWaterCycle/setup-singularity",
-	"title": "github/eWaterCycle/setup-singularity",
-	"url": " https://rseng.github.io/software/repository/github/eWaterCycle/setup-singularity",
-	"content": "GitHub action to setup singularity"
+	"github/philbull/RadioFisher": {
+	"id": "github/philbull/RadioFisher",
+	"title": "github/philbull/RadioFisher",
+	"url": " https://rseng.github.io/software/repository/github/philbull/RadioFisher",
+	"content": "Fisher forecasting for 21cm intensity mapping and spectroscopic galaxy surveys"
 	},
-	"github/eWaterCycle/Cesium-NcWMS": {
-	"id": "github/eWaterCycle/Cesium-NcWMS",
-	"title": "github/eWaterCycle/Cesium-NcWMS",
-	"url": " https://rseng.github.io/software/repository/github/eWaterCycle/Cesium-NcWMS",
-	"content": "Cesium angular directive with ncwms integration to display netcdf datasets"
+	"github/wvanzeist/riroriro": {
+	"id": "github/wvanzeist/riroriro",
+	"title": "github/wvanzeist/riroriro",
+	"url": " https://rseng.github.io/software/repository/github/wvanzeist/riroriro",
+	"content": "A code for simulating gravitational waves and evaluating their detectability."
 	},
-	"github/bio-phys/BioEn": {
-	"id": "github/bio-phys/BioEn",
-	"title": "github/bio-phys/BioEn",
-	"url": " https://rseng.github.io/software/repository/github/bio-phys/BioEn",
-	"content": "BioEn - Bayesian Inference Of ENsembles"
+	"github/bigraph-toolkit-suite/bigraphs.grgen-bigraphs": {
+	"id": "github/bigraph-toolkit-suite/bigraphs.grgen-bigraphs",
+	"title": "github/bigraph-toolkit-suite/bigraphs.grgen-bigraphs",
+	"url": " https://rseng.github.io/software/repository/github/bigraph-toolkit-suite/bigraphs.grgen-bigraphs",
+	"content": "BiGGer is a transformation tool and library that translates bigraphical models and rules to GrGen.NET-compatible files. It enables bigraph rewriting using GrGen.NET."
 	},
-	"github/quanted/esat": {
-	"id": "github/quanted/esat",
-	"title": "github/quanted/esat",
-	"url": " https://rseng.github.io/software/repository/github/quanted/esat",
-	"content": "EPA&#39;s Environmental Source Apportionment Toolkit (ESAT)  python package"
+	"github/dsheward-astro/pynaple": {
+	"id": "github/dsheward-astro/pynaple",
+	"title": "github/dsheward-astro/pynaple",
+	"url": " https://rseng.github.io/software/repository/github/dsheward-astro/pynaple",
+	"content": "Python NAC Automated Pair Lunar Evaluator"
 	},
-	"github/NathanSandford/Chem-I-Calc": {
-	"id": "github/NathanSandford/Chem-I-Calc",
-	"title": "github/NathanSandford/Chem-I-Calc",
-	"url": " https://rseng.github.io/software/repository/github/NathanSandford/Chem-I-Calc",
-	"content": "Chemical information calculator for resolved stellar spectroscopy"
+	"github/TransDecoder/wiki": {
+	"id": "github/TransDecoder/wiki",
+	"title": "github/TransDecoder/wiki",
+	"url": " https://rseng.github.io/software/repository/github/TransDecoder/wiki",
+	"content": "identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks."
 	},
-	"github/jmsdsouzaPhD/GWDALI": {
-	"id": "github/jmsdsouzaPhD/GWDALI",
-	"title": "github/jmsdsouzaPhD/GWDALI",
-	"url": " https://rseng.github.io/software/repository/github/jmsdsouzaPhD/GWDALI",
-	"content": "A Fisher-Based Software for Parameter Estimation from Gravitational Waves"
+	"github/IPESE/REHO": {
+	"id": "github/IPESE/REHO",
+	"title": "github/IPESE/REHO",
+	"url": " https://rseng.github.io/software/repository/github/IPESE/REHO",
+	"content": "Decision Support Tool for Renewable Energy Communities"
 	},
-	"github/sxs-collaboration/spectre": {
-	"id": "github/sxs-collaboration/spectre",
-	"title": "github/sxs-collaboration/spectre",
-	"url": " https://rseng.github.io/software/repository/github/sxs-collaboration/spectre",
-	"content": "SpECTRE is a code for multi-scale, multi-physics problems in astrophysics and gravitational physics."
+	"github/eWaterCycle/Cesium-NcWMS": {
+	"id": "github/eWaterCycle/Cesium-NcWMS",
+	"title": "github/eWaterCycle/Cesium-NcWMS",
+	"url": " https://rseng.github.io/software/repository/github/eWaterCycle/Cesium-NcWMS",
+	"content": "Cesium angular directive with ncwms integration to display netcdf datasets"
 	},
-	"github/sxs-collaboration/gwsurrogate": {
-	"id": "github/sxs-collaboration/gwsurrogate",
-	"title": "github/sxs-collaboration/gwsurrogate",
-	"url": " https://rseng.github.io/software/repository/github/sxs-collaboration/gwsurrogate",
-	"content": "An easy to use interface to gravitational wave surrogate models"
+	"github/eWaterCycle/ewatercycle": {
+	"id": "github/eWaterCycle/ewatercycle",
+	"title": "github/eWaterCycle/ewatercycle",
+	"url": " https://rseng.github.io/software/repository/github/eWaterCycle/ewatercycle",
+	"content": "Python utilities for running hydrological models"
 	},
-	"github/Leo-Simpson/c-lasso": {
-	"id": "github/Leo-Simpson/c-lasso",
-	"title": "github/Leo-Simpson/c-lasso",
-	"url": " https://rseng.github.io/software/repository/github/Leo-Simpson/c-lasso",
-	"content": "c-lasso: a Python package for constrained sparse regression and classification"
+	"github/eWaterCycle/eWaterleaf": {
+	"id": "github/eWaterCycle/eWaterleaf",
+	"title": "github/eWaterCycle/eWaterleaf",
+	"url": " https://rseng.github.io/software/repository/github/eWaterCycle/eWaterleaf",
+	"content": "Simple leaflet-based visualization for the eWaterCycle project"
 	},
-	"github/discsim/frank": {
-	"id": "github/discsim/frank",
-	"title": "github/discsim/frank",
-	"url": " https://rseng.github.io/software/repository/github/discsim/frank",
-	"content": "1D radial brightness profile reconstruction for interferometric sources"
+	"github/eWaterCycle/jupyterlab_thredds": {
+	"id": "github/eWaterCycle/jupyterlab_thredds",
+	"title": "github/eWaterCycle/jupyterlab_thredds",
+	"url": " https://rseng.github.io/software/repository/github/eWaterCycle/jupyterlab_thredds",
+	"content": "JupyterLab dataset browser for THREDDS catalog"
 	},
-	"github/alejostark/phase_space_cosmo_fisher": {
-	"id": "github/alejostark/phase_space_cosmo_fisher",
-	"title": "github/alejostark/phase_space_cosmo_fisher",
-	"url": " https://rseng.github.io/software/repository/github/alejostark/phase_space_cosmo_fisher",
-	"content": "Code used to produce Fisher matrix contours in Stark, Miller Huterer 2016"
+	"github/eWaterCycle/setup-singularity": {
+	"id": "github/eWaterCycle/setup-singularity",
+	"title": "github/eWaterCycle/setup-singularity",
+	"url": " https://rseng.github.io/software/repository/github/eWaterCycle/setup-singularity",
+	"content": "GitHub action to setup singularity"
 	},
-	"github/bezuidenhoutmc/SeeKAT": {
-	"id": "github/bezuidenhoutmc/SeeKAT",
-	"title": "github/bezuidenhoutmc/SeeKAT",
-	"url": " https://rseng.github.io/software/repository/github/bezuidenhoutmc/SeeKAT",
-	"content": "A code for localising a single pulse detected in multiple interferometer beams."
+	"github/eWaterCycle/setup-grpc": {
+	"id": "github/eWaterCycle/setup-grpc",
+	"title": "github/eWaterCycle/setup-grpc",
+	"url": " https://rseng.github.io/software/repository/github/eWaterCycle/setup-grpc",
+	"content": "GitHub Action to setup gRPC C++ environment"
 	},
-	"github/stinefm/relsad": {
-	"id": "github/stinefm/relsad",
-	"title": "github/stinefm/relsad",
-	"url": " https://rseng.github.io/software/repository/github/stinefm/relsad",
-	"content": "A Python package for reliability assessment of modern distribution systems."
+	"github/eWaterCycle/experiment-launcher": {
+	"id": "github/eWaterCycle/experiment-launcher",
+	"title": "github/eWaterCycle/experiment-launcher",
+	"url": " https://rseng.github.io/software/repository/github/eWaterCycle/experiment-launcher",
+	"content": "eWaterCycle Experiment Launcher"
 	},
-	"github/MintonGroup/swiftest": {
-	"id": "github/MintonGroup/swiftest",
-	"title": "github/MintonGroup/swiftest",
-	"url": " https://rseng.github.io/software/repository/github/MintonGroup/swiftest",
-	"content": "Swiftest is a software packaged designed to model the long-term dynamical dynamics of n-body systems with a dominant central body, like the solar system. "
+	"github/eWaterCycle/grpc4bmi": {
+	"id": "github/eWaterCycle/grpc4bmi",
+	"title": "github/eWaterCycle/grpc4bmi",
+	"url": " https://rseng.github.io/software/repository/github/eWaterCycle/grpc4bmi",
+	"content": "gRPC wrapper for model with a Basic modeling interface"
 	},
-	"github/MolecularAI/DockStreamCommunity": {
-	"id": "github/MolecularAI/DockStreamCommunity",
-	"title": "github/MolecularAI/DockStreamCommunity",
-	"url": " https://rseng.github.io/software/repository/github/MolecularAI/DockStreamCommunity",
-	"content": "None"
+	"github/ugovaretto/molekel": {
+	"id": "github/ugovaretto/molekel",
+	"title": "github/ugovaretto/molekel",
+	"url": " https://rseng.github.io/software/repository/github/ugovaretto/molekel",
+	"content": "molekel"
 	},
-	"github/xavierdidelot/ClonalFrameML": {
-	"id": "github/xavierdidelot/ClonalFrameML",
-	"title": "github/xavierdidelot/ClonalFrameML",
-	"url": " https://rseng.github.io/software/repository/github/xavierdidelot/ClonalFrameML",
-	"content": "ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes"
+	"github/deepskies/deeplenstronomy": {
+	"id": "github/deepskies/deeplenstronomy",
+	"title": "github/deepskies/deeplenstronomy",
+	"url": " https://rseng.github.io/software/repository/github/deepskies/deeplenstronomy",
+	"content": "A pipeline for versatile strong lens sample simulations"
 	},
-	"github/xavierdidelot/clonalorigin": {
-	"id": "github/xavierdidelot/clonalorigin",
-	"title": "github/xavierdidelot/clonalorigin",
-	"url": " https://rseng.github.io/software/repository/github/xavierdidelot/clonalorigin",
-	"content": "Inference of homologous recombination in bacteria using whole genome sequences"
+	"github/fjdu/rac-2d": {
+	"id": "github/fjdu/rac-2d",
+	"title": "github/fjdu/rac-2d",
+	"url": " https://rseng.github.io/software/repository/github/fjdu/rac-2d",
+	"content": "Radiative transfer and chemistry"
 	},
-	"github/HajimeKawahara/exojax": {
-	"id": "github/HajimeKawahara/exojax",
-	"title": "github/HajimeKawahara/exojax",
-	"url": " https://rseng.github.io/software/repository/github/HajimeKawahara/exojax",
-	"content": "🐈 Automatic differentiable spectrum modeling of exoplanets/brown dwarfs using JAX, compatible with NumPyro and JAXopt"
+	"github/fjdu/myRadex": {
+	"id": "github/fjdu/myRadex",
+	"title": "github/fjdu/myRadex",
+	"url": " https://rseng.github.io/software/repository/github/fjdu/myRadex",
+	"content": "Similar to radex, with a different way to solve the statistical equilibrium problem"
 	},
-	"github/HajimeKawahara/juwvid": {
-	"id": "github/HajimeKawahara/juwvid",
-	"title": "github/HajimeKawahara/juwvid",
-	"url": " https://rseng.github.io/software/repository/github/HajimeKawahara/juwvid",
-	"content": "Julia code for the time-frequency analysis"
+	"github/FSEC-Photovoltaics/pvrpm-lcoe": {
+	"id": "github/FSEC-Photovoltaics/pvrpm-lcoe",
+	"title": "github/FSEC-Photovoltaics/pvrpm-lcoe",
+	"url": " https://rseng.github.io/software/repository/github/FSEC-Photovoltaics/pvrpm-lcoe",
+	"content": "PV Simulation using SAM and Python"
 	},
-	"github/HajimeKawahara/sot": {
-	"id": "github/HajimeKawahara/sot",
-	"title": "github/HajimeKawahara/sot",
-	"url": " https://rseng.github.io/software/repository/github/HajimeKawahara/sot",
-	"content": "Python package for taking a photo and movie of an exo Earth"
+	"github/fzi-forschungszentrum-informatik/TSInterpret": {
+	"id": "github/fzi-forschungszentrum-informatik/TSInterpret",
+	"title": "github/fzi-forschungszentrum-informatik/TSInterpret",
+	"url": " https://rseng.github.io/software/repository/github/fzi-forschungszentrum-informatik/TSInterpret",
+	"content": "An Open-Source Library for the interpretability of time series classifiers"
 	},
-	"github/mbillingr/libgdf": {
-	"id": "github/mbillingr/libgdf",
-	"title": "github/mbillingr/libgdf",
-	"url": " https://rseng.github.io/software/repository/github/mbillingr/libgdf",
-	"content": "C++ implementation of GDF - &#34;a general dataformat for biosignals&#34; version V2.20."
+	"github/DGtal-team/DGtal": {
+	"id": "github/DGtal-team/DGtal",
+	"title": "github/DGtal-team/DGtal",
+	"url": " https://rseng.github.io/software/repository/github/DGtal-team/DGtal",
+	"content": "Digital Geometry Tools and Algorithm Library"
 	},
-	"github/atchekho/harmpi": {
-	"id": "github/atchekho/harmpi",
-	"title": "github/atchekho/harmpi",
-	"url": " https://rseng.github.io/software/repository/github/atchekho/harmpi",
-	"content": "3D massively parallel general relativictic MHD code HARMPI"
+	"github/BIMSBbioinfo/pigx_scrnaseq": {
+	"id": "github/BIMSBbioinfo/pigx_scrnaseq",
+	"title": "github/BIMSBbioinfo/pigx_scrnaseq",
+	"url": " https://rseng.github.io/software/repository/github/BIMSBbioinfo/pigx_scrnaseq",
+	"content": "Pipeline for analysis of Dropseq single cell data"
 	},
-	"github/BioMedIA/MIRTK": {
-	"id": "github/BioMedIA/MIRTK",
-	"title": "github/BioMedIA/MIRTK",
-	"url": " https://rseng.github.io/software/repository/github/BioMedIA/MIRTK",
-	"content": "The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core libraries, and basic command-line tools. Extension packages are hosted by the MIRTK GitHub group at"
+	"github/BIMSBbioinfo/pigx_rnaseq": {
+	"id": "github/BIMSBbioinfo/pigx_rnaseq",
+	"title": "github/BIMSBbioinfo/pigx_rnaseq",
+	"url": " https://rseng.github.io/software/repository/github/BIMSBbioinfo/pigx_rnaseq",
+	"content": "Pipeline for RNAseq"
 	},
-	"github/rathnakumars/difference-smoothing": {
-	"id": "github/rathnakumars/difference-smoothing",
-	"title": "github/rathnakumars/difference-smoothing",
-	"url": " https://rseng.github.io/software/repository/github/rathnakumars/difference-smoothing",
-	"content": "MATLAB implementation of difference-smoothing algorithm and detailed results obtained by testing the codes on a large sample of simulated light curves from TDC1, described in an article published in MNRAS (arXiv:1704.00706)"
+	"github/daiqile96/OTTERS_paper": {
+	"id": "github/daiqile96/OTTERS_paper",
+	"title": "github/daiqile96/OTTERS_paper",
+	"url": " https://rseng.github.io/software/repository/github/daiqile96/OTTERS_paper",
+	"content": "None"
 	},
-	"github/robdjeff/eagles": {
-	"id": "github/robdjeff/eagles",
-	"title": "github/robdjeff/eagles",
-	"url": " https://rseng.github.io/software/repository/github/robdjeff/eagles",
-	"content": "Estimating AGes from Lithium Equivalent widthS"
+	"github/jumphone/inferloop": {
+	"id": "github/jumphone/inferloop",
+	"title": "github/jumphone/inferloop",
+	"url": " https://rseng.github.io/software/repository/github/jumphone/inferloop",
+	"content": "InferLoop: leveraging single-cell chromatin accessibility for the signal of chromatin loop"
 	},
-	"github/ni1o1/transbigdata": {
-	"id": "github/ni1o1/transbigdata",
-	"title": "github/ni1o1/transbigdata",
-	"url": " https://rseng.github.io/software/repository/github/ni1o1/transbigdata",
-	"content": "A Python package develop for transportation spatio-temporal big data processing, analysis and visualization."
+	"github/exafmm/exafmm-t": {
+	"id": "github/exafmm/exafmm-t",
+	"title": "github/exafmm/exafmm-t",
+	"url": " https://rseng.github.io/software/repository/github/exafmm/exafmm-t",
+	"content": "A kernel-independent fast multipole method library with Python interface."
 	},
-	"github/bwvdnbro/HydroCode1D": {
-	"id": "github/bwvdnbro/HydroCode1D",
-	"title": "github/bwvdnbro/HydroCode1D",
-	"url": " https://rseng.github.io/software/repository/github/bwvdnbro/HydroCode1D",
-	"content": "Basic 1D finite volume code that can handle pure 1D problems and problems with 2D and 3D spherical symmetry."
+	"github/editeodoro/Bbarolo": {
+	"id": "github/editeodoro/Bbarolo",
+	"title": "github/editeodoro/Bbarolo",
+	"url": " https://rseng.github.io/software/repository/github/editeodoro/Bbarolo",
+	"content": "Bbarolo is a 3D fitting tool to derive the kinematics of galaxies from emission-line observations."
 	},
-	"github/bwvdnbro/CMacIonize": {
-	"id": "github/bwvdnbro/CMacIonize",
-	"title": "github/bwvdnbro/CMacIonize",
-	"url": " https://rseng.github.io/software/repository/github/bwvdnbro/CMacIonize",
-	"content": "C++ Monte Carlo photoionization and radiation hydrodynamics code."
+	"github/anderslogg/geco": {
+	"id": "github/anderslogg/geco",
+	"title": "github/anderslogg/geco",
+	"url": " https://rseng.github.io/software/repository/github/anderslogg/geco",
+	"content": "A collection of solvers for the Einstein-Vlasov equations"
 	},
-	"github/the-rccg/hw2d": {
-	"id": "github/the-rccg/hw2d",
-	"title": "github/the-rccg/hw2d",
-	"url": " https://rseng.github.io/software/repository/github/the-rccg/hw2d",
-	"content": "Reference implementation for the Hasegawa-Wakatani model of plasma turbulence inside nuclear fusion reactors in two dimensions"
+	"github/auranic/ClinTrajan": {
+	"id": "github/auranic/ClinTrajan",
+	"title": "github/auranic/ClinTrajan",
+	"url": " https://rseng.github.io/software/repository/github/auranic/ClinTrajan",
+	"content": "Finding trajectories, bifurcations and quantifying pseudotime in large clinical datasets"
 	},
-	"github/emhuff/Balrog": {
-	"id": "github/emhuff/Balrog",
-	"title": "github/emhuff/Balrog",
-	"url": " https://rseng.github.io/software/repository/github/emhuff/Balrog",
-	"content": "DES image simulation software: We dug too deeply and too greedily"
+	"github/PieterjanRobbe/GaussianRandomFields.jl": {
+	"id": "github/PieterjanRobbe/GaussianRandomFields.jl",
+	"title": "github/PieterjanRobbe/GaussianRandomFields.jl",
+	"url": " https://rseng.github.io/software/repository/github/PieterjanRobbe/GaussianRandomFields.jl",
+	"content": "A package for Gaussian random field generation in Julia"
 	},
-	"github/timoast/signac": {
-	"id": "github/timoast/signac",
-	"title": "github/timoast/signac",
-	"url": " https://rseng.github.io/software/repository/github/timoast/signac",
-	"content": "R toolkit for the analysis of single-cell chromatin data"
+	"github/pawni/BayesByHypernet": {
+	"id": "github/pawni/BayesByHypernet",
+	"title": "github/pawni/BayesByHypernet",
+	"url": " https://rseng.github.io/software/repository/github/pawni/BayesByHypernet",
+	"content": "Code for the paper Implicit Weight Uncertainty in Neural Networks"
 	},
-	"github/BobAubouin/Python_Anesthesia_Simulator": {
-	"id": "github/BobAubouin/Python_Anesthesia_Simulator",
-	"title": "github/BobAubouin/Python_Anesthesia_Simulator",
-	"url": " https://rseng.github.io/software/repository/github/BobAubouin/Python_Anesthesia_Simulator",
-	"content": "Simulate the effect of drugs during total intrevenous anesthesia"
+	"github/cmateu/galstreams": {
+	"id": "github/cmateu/galstreams",
+	"title": "github/cmateu/galstreams",
+	"url": " https://rseng.github.io/software/repository/github/cmateu/galstreams",
+	"content": "Milky Way Streams Footprint Library and Toolkit for Python"
 	},
-	"github/nanoporetech/tombo": {
-	"id": "github/nanoporetech/tombo",
-	"title": "github/nanoporetech/tombo",
-	"url": " https://rseng.github.io/software/repository/github/nanoporetech/tombo",
-	"content": "Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data. "
+	"github/cmateu/PyMGC3": {
+	"id": "github/cmateu/PyMGC3",
+	"title": "github/cmateu/PyMGC3",
+	"url": " https://rseng.github.io/software/repository/github/cmateu/PyMGC3",
+	"content": "Python toolkit for mGC3 method"
 	},
-	"github/nanoporetech/pychopper": {
-	"id": "github/nanoporetech/pychopper",
-	"title": "github/nanoporetech/pychopper",
-	"url": " https://rseng.github.io/software/repository/github/nanoporetech/pychopper",
-	"content": "A tool to identify, orient, trim and rescue full length cDNA reads"
+	"github/hope-data-science/tidyfst": {
+	"id": "github/hope-data-science/tidyfst",
+	"title": "github/hope-data-science/tidyfst",
+	"url": " https://rseng.github.io/software/repository/github/hope-data-science/tidyfst",
+	"content": "Tidy Verbs for Fast Data Manipulation"
 	},
-	"github/nanoporetech/qcat": {
-	"id": "github/nanoporetech/qcat",
-	"title": "github/nanoporetech/qcat",
-	"url": " https://rseng.github.io/software/repository/github/nanoporetech/qcat",
-	"content": " qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files."
+	"github/PMBio/peer": {
+	"id": "github/PMBio/peer",
+	"title": "github/PMBio/peer",
+	"url": " https://rseng.github.io/software/repository/github/PMBio/peer",
+	"content": "A factor analysis package"
 	},
-	"github/nanoporetech/index.html#": {
-	"id": "github/nanoporetech/index.html#",
-	"title": "github/nanoporetech/index.html#",
-	"url": " https://rseng.github.io/software/repository/github/nanoporetech/index.html#",
-	"content": "a suite of tools primarily for the identification of modified nucleotides from nanopore sequencing data."
+	"github/PMBio/spatialde2-paper": {
+	"id": "github/PMBio/spatialde2-paper",
+	"title": "github/PMBio/spatialde2-paper",
+	"url": " https://rseng.github.io/software/repository/github/PMBio/spatialde2-paper",
+	"content": "Code to reproduce the figures (data not included)"
 	},
-	"github/nanoporetech/megalodon": {
-	"id": "github/nanoporetech/megalodon",
-	"title": "github/nanoporetech/megalodon",
-	"url": " https://rseng.github.io/software/repository/github/nanoporetech/megalodon",
-	"content": " Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome."
+	"github/radifar/PyPLIF-HIPPOS": {
+	"id": "github/radifar/PyPLIF-HIPPOS",
+	"title": "github/radifar/PyPLIF-HIPPOS",
+	"url": " https://rseng.github.io/software/repository/github/radifar/PyPLIF-HIPPOS",
+	"content": "HIPPOS Is PyPLIF On Steroids. A Molecular Interaction Fingerprinting Tool for Docking Results of Autodock Vina and PLANTS"
 	},
-	"github/nanoporetech/dorado": {
-	"id": "github/nanoporetech/dorado",
-	"title": "github/nanoporetech/dorado",
-	"url": " https://rseng.github.io/software/repository/github/nanoporetech/dorado",
-	"content": "Oxford Nanopore&#39;s Basecaller"
+	"github/NickMilsonPhysics/BinaryStarSolver": {
+	"id": "github/NickMilsonPhysics/BinaryStarSolver",
+	"title": "github/NickMilsonPhysics/BinaryStarSolver",
+	"url": " https://rseng.github.io/software/repository/github/NickMilsonPhysics/BinaryStarSolver",
+	"content": "BinaryStarSolver is a Python 3 program which solves for the orbital elements of binary stars, given radial velocity time series"
 	},
-	"github/nanoporetech/pomoxis": {
-	"id": "github/nanoporetech/pomoxis",
-	"title": "github/nanoporetech/pomoxis",
-	"url": " https://rseng.github.io/software/repository/github/nanoporetech/pomoxis",
-	"content": "Analysis components from Oxford Nanopore Research"
+	"github/dmilakovic/QSOSIM10": {
+	"id": "github/dmilakovic/QSOSIM10",
+	"title": "github/dmilakovic/QSOSIM10",
+	"url": " https://rseng.github.io/software/repository/github/dmilakovic/QSOSIM10",
+	"content": "Fortran code to generate artificial QSO spectra"
 	},
-	"github/nanoporetech/pinfish": {
-	"id": "github/nanoporetech/pinfish",
-	"title": "github/nanoporetech/pinfish",
-	"url": " https://rseng.github.io/software/repository/github/nanoporetech/pinfish",
-	"content": "Tools to annotate genomes using long read transcriptomics data"
+	"github/optimusmoose/jsms": {
+	"id": "github/optimusmoose/jsms",
+	"title": "github/optimusmoose/jsms",
+	"url": " https://rseng.github.io/software/repository/github/optimusmoose/jsms",
+	"content": "A modular JavaScript viewer for mass spectrometry data"
 	},
-	"github/nanoporetech/medaka": {
-	"id": "github/nanoporetech/medaka",
-	"title": "github/nanoporetech/medaka",
-	"url": " https://rseng.github.io/software/repository/github/nanoporetech/medaka",
-	"content": "Sequence correction provided by ONT Research"
+	"github/SciML/DataInterpolations.jl": {
+	"id": "github/SciML/DataInterpolations.jl",
+	"title": "github/SciML/DataInterpolations.jl",
+	"url": " https://rseng.github.io/software/repository/github/SciML/DataInterpolations.jl",
+	"content": "A library of data interpolation and smoothing functions"
 	},
-	"github/nanoporetech/ont_fast5_api": {
-	"id": "github/nanoporetech/ont_fast5_api",
-	"title": "github/nanoporetech/ont_fast5_api",
-	"url": " https://rseng.github.io/software/repository/github/nanoporetech/ont_fast5_api",
-	"content": "Oxford Nanopore Technologies fast5 API software"
+	"github/SciML/GlobalSensitivity.jl": {
+	"id": "github/SciML/GlobalSensitivity.jl",
+	"title": "github/SciML/GlobalSensitivity.jl",
+	"url": " https://rseng.github.io/software/repository/github/SciML/GlobalSensitivity.jl",
+	"content": "None"
 	},
-	"github/nanoporetech/flappie": {
-	"id": "github/nanoporetech/flappie",
-	"title": "github/nanoporetech/flappie",
-	"url": " https://rseng.github.io/software/repository/github/nanoporetech/flappie",
-	"content": "Flip-flop basecaller for Oxford Nanopore reads"
+	"github/dunnkers/fseval": {
+	"id": "github/dunnkers/fseval",
+	"title": "github/dunnkers/fseval",
+	"url": " https://rseng.github.io/software/repository/github/dunnkers/fseval",
+	"content": "Benchmarking framework for Feature Selection and Feature Ranking algorithms 🚀"
 	},
-	"github/nanoporetech/scrappie": {
-	"id": "github/nanoporetech/scrappie",
-	"title": "github/nanoporetech/scrappie",
-	"url": " https://rseng.github.io/software/repository/github/nanoporetech/scrappie",
-	"content": "Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group"
+	"github/johnpaulett/python-hl7": {
+	"id": "github/johnpaulett/python-hl7",
+	"title": "github/johnpaulett/python-hl7",
+	"url": " https://rseng.github.io/software/repository/github/johnpaulett/python-hl7",
+	"content": "A simple library for parsing messages of Health Level 7 (HL7) version 2.x into Python objects."
 	},
-	"github/jamescasbon/PyVCF": {
-	"id": "github/jamescasbon/PyVCF",
-	"title": "github/jamescasbon/PyVCF",
-	"url": " https://rseng.github.io/software/repository/github/jamescasbon/PyVCF",
-	"content": "A Variant Call Format reader for Python."
+	"github/plotly/dash": {
+	"id": "github/plotly/dash",
+	"title": "github/plotly/dash",
+	"url": " https://rseng.github.io/software/repository/github/plotly/dash",
+	"content": "Analytical Web Apps for Python, R, Julia, and Jupyter. No JavaScript Required."
 	},
-	"github/LucyMcGowan/tipr": {
-	"id": "github/LucyMcGowan/tipr",
-	"title": "github/LucyMcGowan/tipr",
-	"url": " https://rseng.github.io/software/repository/github/LucyMcGowan/tipr",
-	"content": "An R package for conducting sensitivity analyses for unmeasured confounders"
+	"github/jranalli/solartoolbox": {
+	"id": "github/jranalli/solartoolbox",
+	"title": "github/jranalli/solartoolbox",
+	"url": " https://rseng.github.io/software/repository/github/jranalli/solartoolbox",
+	"content": "Library of tools used to support spatial analyses of solar energy"
 	},
-	"github/research-software-directory/research-software-directory": {
-	"id": "github/research-software-directory/research-software-directory",
-	"title": "github/research-software-directory/research-software-directory",
-	"url": " https://rseng.github.io/software/repository/github/research-software-directory/research-software-directory",
-	"content": "The Research Software Directory is a content management system that is tailored to software."
+	"github/labcbb/SqueezeCall": {
+	"id": "github/labcbb/SqueezeCall",
+	"title": "github/labcbb/SqueezeCall",
+	"url": " https://rseng.github.io/software/repository/github/labcbb/SqueezeCall",
+	"content": "None"
 	},
-	"github/alessiospuriomancini/cosmopower": {
-	"id": "github/alessiospuriomancini/cosmopower",
-	"title": "github/alessiospuriomancini/cosmopower",
-	"url": " https://rseng.github.io/software/repository/github/alessiospuriomancini/cosmopower",
-	"content": "Machine Learning - accelerated Bayesian inference"
+	"github/bioturing/hera": {
+	"id": "github/bioturing/hera",
+	"title": "github/bioturing/hera",
+	"url": " https://rseng.github.io/software/repository/github/bioturing/hera",
+	"content": "a bioinformatics tool that helps analyze RNA-seq data, providing base-to-base alignment BAM files, transcript abundance estimation, and fusion gene detection."
 	},
-	"github/hsci-r/finnish-media-scrapers": {
-	"id": "github/hsci-r/finnish-media-scrapers",
-	"title": "github/hsci-r/finnish-media-scrapers",
-	"url": " https://rseng.github.io/software/repository/github/hsci-r/finnish-media-scrapers",
-	"content": "Scrapers for extracting articles from major Finnish journalistic media outlets"
+	"github/n8thangreen/BCEA": {
+	"id": "github/n8thangreen/BCEA",
+	"title": "github/n8thangreen/BCEA",
+	"url": " https://rseng.github.io/software/repository/github/n8thangreen/BCEA",
+	"content": "Bayesian Cost Effectiveness Analysis. Given the results of a Bayesian model (possibly based on MCMC) in the form of simulations from the posterior distributions of suitable variables of costs and clinical benefits for two or more interventions, produces a health economic evaluation. Compares one of the interventions (the &#34;reference&#34;) to the others (&#34;comparators&#34;). Produces many summary and plots to analyse the results"
 	},
-	"github/chombo-discharge/chombo-discharge": {
-	"id": "github/chombo-discharge/chombo-discharge",
-	"title": "github/chombo-discharge/chombo-discharge",
-	"url": " https://rseng.github.io/software/repository/github/chombo-discharge/chombo-discharge",
-	"content": "Beta release of chombo-discharge, a research code for low-temperature plasma which uses a Cartesian cut-cell formalism."
+	"github/evanoconnor/GR1D": {
+	"id": "github/evanoconnor/GR1D",
+	"title": "github/evanoconnor/GR1D",
+	"url": " https://rseng.github.io/software/repository/github/evanoconnor/GR1D",
+	"content": "General Relativistic, Spherically Symmetry, Neutrino Transport Code for Stellar Collapse"
 	},
-	"github/gtw2i/GA-Galaxy": {
-	"id": "github/gtw2i/GA-Galaxy",
-	"title": "github/gtw2i/GA-Galaxy",
-	"url": " https://rseng.github.io/software/repository/github/gtw2i/GA-Galaxy",
-	"content": "None"
+	"github/cas-bioinf/rboAnalyzer": {
+	"id": "github/cas-bioinf/rboAnalyzer",
+	"title": "github/cas-bioinf/rboAnalyzer",
+	"url": " https://rseng.github.io/software/repository/github/cas-bioinf/rboAnalyzer",
+	"content": "Tool for analysing BLAST output for ncRNA sequences"
 	},
-	"github/pennsignals/chime": {
-	"id": "github/pennsignals/chime",
-	"title": "github/pennsignals/chime",
-	"url": " https://rseng.github.io/software/repository/github/pennsignals/chime",
-	"content": "COVID-19 Hospital Impact Model for Epidemics"
+	"github/sibirrer/psfr": {
+	"id": "github/sibirrer/psfr",
+	"title": "github/sibirrer/psfr",
+	"url": " https://rseng.github.io/software/repository/github/sibirrer/psfr",
+	"content": "Point Spread Function reconstruction"
 	},
-	"github/sandialabs/pvOps": {
-	"id": "github/sandialabs/pvOps",
-	"title": "github/sandialabs/pvOps",
-	"url": " https://rseng.github.io/software/repository/github/sandialabs/pvOps",
-	"content": "A set of documented functions for supporting operations research of photovoltaic energy systems. "
+	"github/sibirrer/hierArc": {
+	"id": "github/sibirrer/hierArc",
+	"title": "github/sibirrer/hierArc",
+	"url": " https://rseng.github.io/software/repository/github/sibirrer/hierArc",
+	"content": "Hierarchical inference of cosmological parameters from a set of strong lensing systems"
 	},
-	"github/reizio/reiz.io": {
-	"id": "github/reizio/reiz.io",
-	"title": "github/reizio/reiz.io",
-	"url": " https://rseng.github.io/software/repository/github/reizio/reiz.io",
-	"content": "Structural Source Code Search Engine"
+	"github/sibirrer/lenstronomy": {
+	"id": "github/sibirrer/lenstronomy",
+	"title": "github/sibirrer/lenstronomy",
+	"url": " https://rseng.github.io/software/repository/github/sibirrer/lenstronomy",
+	"content": "multi-purpose lens modeling software package"
 	},
-	"github/ablab/spades": {
-	"id": "github/ablab/spades",
-	"title": "github/ablab/spades",
-	"url": " https://rseng.github.io/software/repository/github/ablab/spades",
-	"content": "SPAdes Genome Assembler"
+	"github/spack/spack": {
+	"id": "github/spack/spack",
+	"title": "github/spack/spack",
+	"url": " https://rseng.github.io/software/repository/github/spack/spack",
+	"content": "A flexible package manager that supports multiple versions, configurations, platforms, and compilers."
 	},
-	"github/ablab/nerpa": {
-	"id": "github/ablab/nerpa",
-	"title": "github/ablab/nerpa",
-	"url": " https://rseng.github.io/software/repository/github/ablab/nerpa",
-	"content": "None"
+	"github/MIC-DKFZ/HD-BET": {
+	"id": "github/MIC-DKFZ/HD-BET",
+	"title": "github/MIC-DKFZ/HD-BET",
+	"url": " https://rseng.github.io/software/repository/github/MIC-DKFZ/HD-BET",
+	"content": "MRI brain extraction tool"
 	},
-	"github/ablab/TandemTools": {
-	"id": "github/ablab/TandemTools",
-	"title": "github/ablab/TandemTools",
-	"url": " https://rseng.github.io/software/repository/github/ablab/TandemTools",
-	"content": "Tool for assessing/improving assembly quality in extra-long tandem repeats"
+	"github/MIC-DKFZ/TractSeg": {
+	"id": "github/MIC-DKFZ/TractSeg",
+	"title": "github/MIC-DKFZ/TractSeg",
+	"url": " https://rseng.github.io/software/repository/github/MIC-DKFZ/TractSeg",
+	"content": "Automatic White Matter Bundle Segmentation"
 	},
-	"github/justyncw/STAR_MELT": {
-	"id": "github/justyncw/STAR_MELT",
-	"title": "github/justyncw/STAR_MELT",
-	"url": " https://rseng.github.io/software/repository/github/justyncw/STAR_MELT",
-	"content": "Repository for the STAR-MELT emission line analysis Jupyter notebook and Python package"
+	"github/chanzuckerberg/idseq-dag": {
+	"id": "github/chanzuckerberg/idseq-dag",
+	"title": "github/chanzuckerberg/idseq-dag",
+	"url": " https://rseng.github.io/software/repository/github/chanzuckerberg/idseq-dag",
+	"content": "Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows."
 	},
-	"github/sidchaini/DistClassiPy": {
-	"id": "github/sidchaini/DistClassiPy",
-	"title": "github/sidchaini/DistClassiPy",
-	"url": " https://rseng.github.io/software/repository/github/sidchaini/DistClassiPy",
-	"content": "A python package for a distance-based classifier which can use several different distance metrics."
+	"github/chanzuckerberg/shasta": {
+	"id": "github/chanzuckerberg/shasta",
+	"title": "github/chanzuckerberg/shasta",
+	"url": " https://rseng.github.io/software/repository/github/chanzuckerberg/shasta",
+	"content": "De novo assembly from Oxford Nanopore reads."
 	},
-	"github/rrwick/Unicycler": {
-	"id": "github/rrwick/Unicycler",
-	"title": "github/rrwick/Unicycler",
-	"url": " https://rseng.github.io/software/repository/github/rrwick/Unicycler",
-	"content": "hybrid assembly pipeline for bacterial genomes"
+	"github/chanzuckerberg/cellxgene": {
+	"id": "github/chanzuckerberg/cellxgene",
+	"title": "github/chanzuckerberg/cellxgene",
+	"url": " https://rseng.github.io/software/repository/github/chanzuckerberg/cellxgene",
+	"content": "an interactive explorer for single-cell transcriptomics data"
 	},
-	"github/rrwick/Filtlong": {
-	"id": "github/rrwick/Filtlong",
-	"title": "github/rrwick/Filtlong",
-	"url": " https://rseng.github.io/software/repository/github/rrwick/Filtlong",
-	"content": "quality filtering tool for long reads"
+	"github/palumbom/grass": {
+	"id": "github/palumbom/grass",
+	"title": "github/palumbom/grass",
+	"url": " https://rseng.github.io/software/repository/github/palumbom/grass",
+	"content": "A testbed for stellar granulation in exoplanet RV searches. "
 	},
-	"github/rrwick/Deepbinner": {
-	"id": "github/rrwick/Deepbinner",
-	"title": "github/rrwick/Deepbinner",
-	"url": " https://rseng.github.io/software/repository/github/rrwick/Deepbinner",
-	"content": "a signal-level demultiplexer for Oxford Nanopore reads"
+	"github/lmfit/lmfit-py": {
+	"id": "github/lmfit/lmfit-py",
+	"title": "github/lmfit/lmfit-py",
+	"url": " https://rseng.github.io/software/repository/github/lmfit/lmfit-py",
+	"content": "Non-Linear Least Squares Minimization, with flexible Parameter settings, based on scipy.optimize, and with many additional classes and methods for curve fitting. "
 	},
-	"github/rrwick/Bandage": {
-	"id": "github/rrwick/Bandage",
-	"title": "github/rrwick/Bandage",
-	"url": " https://rseng.github.io/software/repository/github/rrwick/Bandage",
-	"content": "a Bioinformatics Application for Navigating De novo Assembly Graphs Easily"
+	"github/cboursnell/crb-blast": {
+	"id": "github/cboursnell/crb-blast",
+	"title": "github/cboursnell/crb-blast",
+	"url": " https://rseng.github.io/software/repository/github/cboursnell/crb-blast",
+	"content": "Conditional Reciprocal Best Blast"
 	},
-	"github/rrwick/Porechop": {
-	"id": "github/rrwick/Porechop",
-	"title": "github/rrwick/Porechop",
-	"url": " https://rseng.github.io/software/repository/github/rrwick/Porechop",
-	"content": "adapter trimmer for Oxford Nanopore reads"
+	"github/IMB-Computational-Genomics-Lab/scGPS": {
+	"id": "github/IMB-Computational-Genomics-Lab/scGPS",
+	"title": "github/IMB-Computational-Genomics-Lab/scGPS",
+	"url": " https://rseng.github.io/software/repository/github/IMB-Computational-Genomics-Lab/scGPS",
+	"content": "A framework for clustering (CORE) and estimation of relationship between pairs of clusters (scGPS) from single cell data "
 	},
-	"github/Exo-TiC/ExoTiC-LD": {
-	"id": "github/Exo-TiC/ExoTiC-LD",
-	"title": "github/Exo-TiC/ExoTiC-LD",
-	"url": " https://rseng.github.io/software/repository/github/Exo-TiC/ExoTiC-LD",
-	"content": "Limb-darkening package to calculate the coefficients for specific instruments, stars, and wavelength ranges"
+	"github/ekiefl/pooltool": {
+	"id": "github/ekiefl/pooltool",
+	"title": "github/ekiefl/pooltool",
+	"url": " https://rseng.github.io/software/repository/github/ekiefl/pooltool",
+	"content": "A sandbox billiards game that emphasizes realistic physics"
 	},
-	"github/lucian-ilie/DELPHI": {
-	"id": "github/lucian-ilie/DELPHI",
-	"title": "github/lucian-ilie/DELPHI",
-	"url": " https://rseng.github.io/software/repository/github/lucian-ilie/DELPHI",
-	"content": "Deep learning protein-protein binding sites prediction"
+	"github/ronnyerrmann/HiFLEx": {
+	"id": "github/ronnyerrmann/HiFLEx",
+	"title": "github/ronnyerrmann/HiFLEx",
+	"url": " https://rseng.github.io/software/repository/github/ronnyerrmann/HiFLEx",
+	"content": "Pipeline to reduce echelle data (taken with a single or bifurcated fiber input)"
 	},
-	"github/Lbalkenhol/candl": {
-	"id": "github/Lbalkenhol/candl",
-	"title": "github/Lbalkenhol/candl",
-	"url": " https://rseng.github.io/software/repository/github/Lbalkenhol/candl",
-	"content": "Differentiable Likelihood for CMB Analysis"
+	"github/NKI-CCB/PRECISE": {
+	"id": "github/NKI-CCB/PRECISE",
+	"title": "github/NKI-CCB/PRECISE",
+	"url": " https://rseng.github.io/software/repository/github/NKI-CCB/PRECISE",
+	"content": "None"
 	},
-	"github/BigDataBiology/argNorm": {
-	"id": "github/BigDataBiology/argNorm",
-	"title": "github/BigDataBiology/argNorm",
-	"url": " https://rseng.github.io/software/repository/github/BigDataBiology/argNorm",
-	"content": "ARG normalization by mapping to the ARO ontology."
+	"github/siriobelli/flame": {
+	"id": "github/siriobelli/flame",
+	"title": "github/siriobelli/flame",
+	"url": " https://rseng.github.io/software/repository/github/siriobelli/flame",
+	"content": "Flame data reduction pipeline"
 	},
-	"github/rhayes777/PyAutoFit": {
-	"id": "github/rhayes777/PyAutoFit",
-	"title": "github/rhayes777/PyAutoFit",
-	"url": " https://rseng.github.io/software/repository/github/rhayes777/PyAutoFit",
+	"github/meinardmueller/libfmp": {
+	"id": "github/meinardmueller/libfmp",
+	"title": "github/meinardmueller/libfmp",
+	"url": " https://rseng.github.io/software/repository/github/meinardmueller/libfmp",
 	"content": "None"
 	},
-	"github/FridleyLab/spatialGE": {
-	"id": "github/FridleyLab/spatialGE",
-	"title": "github/FridleyLab/spatialGE",
-	"url": " https://rseng.github.io/software/repository/github/FridleyLab/spatialGE",
-	"content": "Methods for visualization and analysis of spatially-resolved gene expression"
+	"github/meinardmueller/synctoolbox": {
+	"id": "github/meinardmueller/synctoolbox",
+	"title": "github/meinardmueller/synctoolbox",
+	"url": " https://rseng.github.io/software/repository/github/meinardmueller/synctoolbox",
+	"content": "Sync Toolbox - Python package with reference implementations for efficient, robust, and accurate music synchronization based on dynamic time warping (DTW)"
 	},
-	"github/HillLab/SomaticSiMu": {
-	"id": "github/HillLab/SomaticSiMu",
-	"title": "github/HillLab/SomaticSiMu",
-	"url": " https://rseng.github.io/software/repository/github/HillLab/SomaticSiMu",
-	"content": "SomaticSiMu generates single and double base pair substitutions, and single base pair insertions and deletions of biologically representative mutation signature probabilities and combinations."
+	"github/hyosubkim/bayes-toolbox": {
+	"id": "github/hyosubkim/bayes-toolbox",
+	"title": "github/hyosubkim/bayes-toolbox",
+	"url": " https://rseng.github.io/software/repository/github/hyosubkim/bayes-toolbox",
+	"content": "bayes-toolbox"
 	},
-	"github/FSEC-Photovoltaics/pvrpm-lcoe": {
-	"id": "github/FSEC-Photovoltaics/pvrpm-lcoe",
-	"title": "github/FSEC-Photovoltaics/pvrpm-lcoe",
-	"url": " https://rseng.github.io/software/repository/github/FSEC-Photovoltaics/pvrpm-lcoe",
-	"content": "PV Simulation using SAM and Python"
+	"github/mathjax/MathJax": {
+	"id": "github/mathjax/MathJax",
+	"title": "github/mathjax/MathJax",
+	"url": " https://rseng.github.io/software/repository/github/mathjax/MathJax",
+	"content": "Beautiful math in all browsers"
 	},
-	"github/mifumagalli/cluster-cloc": {
-	"id": "github/mifumagalli/cluster-cloc",
-	"title": "github/mifumagalli/cluster-cloc",
-	"url": " https://rseng.github.io/software/repository/github/mifumagalli/cluster-cloc",
-	"content": "Automatically exported from code.google.com/p/cluster-cloc"
+	"github/EC-Earth/ece2cmor3": {
+	"id": "github/EC-Earth/ece2cmor3",
+	"title": "github/EC-Earth/ece2cmor3",
+	"url": " https://rseng.github.io/software/repository/github/EC-Earth/ece2cmor3",
+	"content": "Post-processing and cmorization of ec-earth output"
 	},
-	"github/JuliaPlots/Makie.jl": {
-	"id": "github/JuliaPlots/Makie.jl",
-	"title": "github/JuliaPlots/Makie.jl",
-	"url": " https://rseng.github.io/software/repository/github/JuliaPlots/Makie.jl",
-	"content": "High level plotting on the GPU."
+	"github/sbird/GenPK": {
+	"id": "github/sbird/GenPK",
+	"title": "github/sbird/GenPK",
+	"url": " https://rseng.github.io/software/repository/github/sbird/GenPK",
+	"content": "Program for finding the matter power spectrum from Gadget format files. Uses FFTW3 and GadgetReader."
 	},
-	"github/loosolab/TOBIAS": {
-	"id": "github/loosolab/TOBIAS",
-	"title": "github/loosolab/TOBIAS",
-	"url": " https://rseng.github.io/software/repository/github/loosolab/TOBIAS",
-	"content": "Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal "
+	"github/sbird/fake_spectra": {
+	"id": "github/sbird/fake_spectra",
+	"title": "github/sbird/fake_spectra",
+	"url": " https://rseng.github.io/software/repository/github/sbird/fake_spectra",
+	"content": "A code for generating fake spectra from a cosmological simulation"
 	},
-	"github/aineniamh/snipit": {
-	"id": "github/aineniamh/snipit",
-	"title": "github/aineniamh/snipit",
-	"url": " https://rseng.github.io/software/repository/github/aineniamh/snipit",
-	"content": "snipit: summarise snps relative to your reference sequence"
+	"github/wfondrie/mokapot": {
+	"id": "github/wfondrie/mokapot",
+	"title": "github/wfondrie/mokapot",
+	"url": " https://rseng.github.io/software/repository/github/wfondrie/mokapot",
+	"content": "Fast and flexible semi-supervised learning for peptide detection in Python"
 	},
-	"github/jfowkes/pycutest": {
-	"id": "github/jfowkes/pycutest",
-	"title": "github/jfowkes/pycutest",
-	"url": " https://rseng.github.io/software/repository/github/jfowkes/pycutest",
-	"content": "Python interface to CUTEst"
+	"github/SWIFTSIM/emulator": {
+	"id": "github/SWIFTSIM/emulator",
+	"title": "github/SWIFTSIM/emulator",
+	"url": " https://rseng.github.io/software/repository/github/SWIFTSIM/emulator",
+	"content": "The SWIFT simulation cosmological emulator (swift-emulator)"
 	},
-	"github/ZhaoXM-Lab/metaMIC": {
-	"id": "github/ZhaoXM-Lab/metaMIC",
-	"title": "github/ZhaoXM-Lab/metaMIC",
-	"url": " https://rseng.github.io/software/repository/github/ZhaoXM-Lab/metaMIC",
-	"content": "Assessing and Improving the quality of metagenomic assemblies"
+	"github/joe-antognini/kozai": {
+	"id": "github/joe-antognini/kozai",
+	"title": "github/joe-antognini/kozai",
+	"url": " https://rseng.github.io/software/repository/github/joe-antognini/kozai",
+	"content": "A Python package to evolve hierarchical triples in the secular approximation"
 	},
-	"github/devanshkv/fetch": {
-	"id": "github/devanshkv/fetch",
-	"title": "github/devanshkv/fetch",
-	"url": " https://rseng.github.io/software/repository/github/devanshkv/fetch",
-	"content": "A set of deep learning models for FRB/RFI binary classification. "
+	"github/dlinssen/sunbather": {
+	"id": "github/dlinssen/sunbather",
+	"title": "github/dlinssen/sunbather",
+	"url": " https://rseng.github.io/software/repository/github/dlinssen/sunbather",
+	"content": "Python/Cloudy package for simulating escaping exoplanet atmospheres and their transit spectra."
 	},
-	"github/sing-group/seda": {
-	"id": "github/sing-group/seda",
-	"title": "github/sing-group/seda",
-	"url": " https://rseng.github.io/software/repository/github/sing-group/seda",
-	"content": "SEquence DAtaset builder"
+	"github/QuantumPlasma/SFQEDtoolkit": {
+	"id": "github/QuantumPlasma/SFQEDtoolkit",
+	"title": "github/QuantumPlasma/SFQEDtoolkit",
+	"url": " https://rseng.github.io/software/repository/github/QuantumPlasma/SFQEDtoolkit",
+	"content": "None"
 	},
-	"github/sing-group/my-brain-seq": {
-	"id": "github/sing-group/my-brain-seq",
-	"title": "github/sing-group/my-brain-seq",
-	"url": " https://rseng.github.io/software/repository/github/sing-group/my-brain-seq",
-	"content": "myBrain-Seq: a Compi pipeline for miRNA-Seq data analysis in neuropsychiatry"
+	"github/csb-toolbox/CSB": {
+	"id": "github/csb-toolbox/CSB",
+	"title": "github/csb-toolbox/CSB",
+	"url": " https://rseng.github.io/software/repository/github/csb-toolbox/CSB",
+	"content": "A Python framework for structural bioinformatics."
 	},
-	"github/adcameron/ffancy": {
-	"id": "github/adcameron/ffancy",
-	"title": "github/adcameron/ffancy",
-	"url": " https://rseng.github.io/software/repository/github/adcameron/ffancy",
-	"content": "Software package for testing of the Fast Folding Algorithm (FFA)"
+	"github/luispinos/Exploring-the-interest-for-specific-courses-bias-in-course-effect-modelling": {
+	"id": "github/luispinos/Exploring-the-interest-for-specific-courses-bias-in-course-effect-modelling",
+	"title": "github/luispinos/Exploring-the-interest-for-specific-courses-bias-in-course-effect-modelling",
+	"url": " https://rseng.github.io/software/repository/github/luispinos/Exploring-the-interest-for-specific-courses-bias-in-course-effect-modelling",
+	"content": "This project contains the R scripts needed to replicate the results for the conference paper: Modelling the effect of courses over soft skills: A simulation study, presented at AERA 2023 Chicago by Pinos Ullauri L.A., Fleury A., Van den Noortgate W., Lebis A., Vermeulen M., Karami A."
 	},
-	"github/Samreay/Barry": {
-	"id": "github/Samreay/Barry",
-	"title": "github/Samreay/Barry",
-	"url": " https://rseng.github.io/software/repository/github/Samreay/Barry",
-	"content": "BAO Model Fitting Made Easy"
+	"github/lazear/sage": {
+	"id": "github/lazear/sage",
+	"title": "github/lazear/sage",
+	"url": " https://rseng.github.io/software/repository/github/lazear/sage",
+	"content": "Proteomics search &amp; quantification so fast that it feels like magic"
 	},
-	"github/Samreay/ChainConsumer": {
-	"id": "github/Samreay/ChainConsumer",
-	"title": "github/Samreay/ChainConsumer",
-	"url": " https://rseng.github.io/software/repository/github/Samreay/ChainConsumer",
-	"content": "Corner plots, LaTeX tables and plotting walks."
+	"github/kennethcarrell/ATARRI": {
+	"id": "github/kennethcarrell/ATARRI",
+	"title": "github/kennethcarrell/ATARRI",
+	"url": " https://rseng.github.io/software/repository/github/kennethcarrell/ATARRI",
+	"content": "A TESS Archive RR Lyrae Classifier"
 	},
-	"github/Samreay/Marz": {
-	"id": "github/Samreay/Marz",
-	"title": "github/Samreay/Marz",
-	"url": " https://rseng.github.io/software/repository/github/Samreay/Marz",
-	"content": "The Marz redshifting program is intended for use in cosmology surveys, specifically for the OzDES team."
+	"github/zengzhenhuan/GFNet": {
+	"id": "github/zengzhenhuan/GFNet",
+	"title": "github/zengzhenhuan/GFNet",
+	"url": " https://rseng.github.io/software/repository/github/zengzhenhuan/GFNet",
+	"content": "None"
 	},
-	"github/pyxnat/pyxnat": {
-	"id": "github/pyxnat/pyxnat",
-	"title": "github/pyxnat/pyxnat",
-	"url": " https://rseng.github.io/software/repository/github/pyxnat/pyxnat",
-	"content": "XNAT in Python"
+	"github/zarr-developers/zarr-python": {
+	"id": "github/zarr-developers/zarr-python",
+	"title": "github/zarr-developers/zarr-python",
+	"url": " https://rseng.github.io/software/repository/github/zarr-developers/zarr-python",
+	"content": "An implementation of chunked, compressed, N-dimensional arrays for Python."
 	},
-	"github/daler/pybedtools": {
-	"id": "github/daler/pybedtools",
-	"title": "github/daler/pybedtools",
-	"url": " https://rseng.github.io/software/repository/github/daler/pybedtools",
-	"content": "Python wrapper -- and more -- for BEDTools (bioinformatics tools for &#34;genome arithmetic&#34;)"
+	"github/EnricoCorsaro/DIAMONDS": {
+	"id": "github/EnricoCorsaro/DIAMONDS",
+	"title": "github/EnricoCorsaro/DIAMONDS",
+	"url": " https://rseng.github.io/software/repository/github/EnricoCorsaro/DIAMONDS",
+	"content": "DIAMONDS (high-DImensional And multi-MOdal NesteD Sampling) - Bayesian Inference Software"
 	},
-	"github/daler/gffutils": {
-	"id": "github/daler/gffutils",
-	"title": "github/daler/gffutils",
-	"url": " https://rseng.github.io/software/repository/github/daler/gffutils",
-	"content": "GFF and GTF file manipulation and interconversion"
+	"github/EnricoCorsaro/FAMED": {
+	"id": "github/EnricoCorsaro/FAMED",
+	"title": "github/EnricoCorsaro/FAMED",
+	"url": " https://rseng.github.io/software/repository/github/EnricoCorsaro/FAMED",
+	"content": "FAMED (Fast and AutoMated pEak bagging with DIAMONDS) - Pipeline"
 	},
-	"github/esplint/IRACpm": {
-	"id": "github/esplint/IRACpm",
-	"title": "github/esplint/IRACpm",
-	"url": " https://rseng.github.io/software/repository/github/esplint/IRACpm",
-	"content": "IRACpm R Package: Applies a 7-8 order distortion correction to IRAC astrometric data from the Spitzer Space Telescope"
+	"github/OSeMOSYS/otoole": {
+	"id": "github/OSeMOSYS/otoole",
+	"title": "github/OSeMOSYS/otoole",
+	"url": " https://rseng.github.io/software/repository/github/OSeMOSYS/otoole",
+	"content": "OSeMOSYS Tools for Energy"
 	},
-	"github/galkintool/galkin": {
-	"id": "github/galkintool/galkin",
-	"title": "github/galkintool/galkin",
-	"url": " https://rseng.github.io/software/repository/github/galkintool/galkin",
-	"content": "None"
+	"github/cbielow/PTXQC": {
+	"id": "github/cbielow/PTXQC",
+	"title": "github/cbielow/PTXQC",
+	"url": " https://rseng.github.io/software/repository/github/cbielow/PTXQC",
+	"content": "A Quality Control (QC) pipeline for Proteomics (PTX) results generated by MaxQuant"
 	},
-	"github/ZjuLiangsl/mmkp": {
-	"id": "github/ZjuLiangsl/mmkp",
-	"title": "github/ZjuLiangsl/mmkp",
-	"url": " https://rseng.github.io/software/repository/github/ZjuLiangsl/mmkp",
-	"content": "A Mind Mapping Knowledgebase Prototyping Tool for Precision Medicine"
+	"github/nespinoza/mc-spam": {
+	"id": "github/nespinoza/mc-spam",
+	"title": "github/nespinoza/mc-spam",
+	"url": " https://rseng.github.io/software/repository/github/nespinoza/mc-spam",
+	"content": "MC-SPAM is an algorithm to generate limb-darkening coefficients from models that are comparable to transit photometry according to the formalism described in Espinoza &amp; Jordan (2015)"
 	},
-	"github/devitocodes/devito": {
-	"id": "github/devitocodes/devito",
-	"title": "github/devitocodes/devito",
-	"url": " https://rseng.github.io/software/repository/github/devitocodes/devito",
-	"content": "Code generation framework for automated finite difference computation"
+	"github/nespinoza/juliet": {
+	"id": "github/nespinoza/juliet",
+	"title": "github/nespinoza/juliet",
+	"url": " https://rseng.github.io/software/repository/github/nespinoza/juliet",
+	"content": "A versatile modelling tool for transiting and non-transiting (single and multiple) exoplanetary systems"
 	},
-	"github/devitocodes/pyrevolve": {
-	"id": "github/devitocodes/pyrevolve",
-	"title": "github/devitocodes/pyrevolve",
-	"url": " https://rseng.github.io/software/repository/github/devitocodes/pyrevolve",
-	"content": "Python library to manage checkpointing for adjoints"
+	"github/nespinoza/limb-darkening": {
+	"id": "github/nespinoza/limb-darkening",
+	"title": "github/nespinoza/limb-darkening",
+	"url": " https://rseng.github.io/software/repository/github/nespinoza/limb-darkening",
+	"content": "Codes to generate limb-darkening coefficients using arbitrary response functions as explained in Espinoza &amp; Jordan (2015)"
 	},
-	"github/ParkerLab/ataqv": {
-	"id": "github/ParkerLab/ataqv",
-	"title": "github/ParkerLab/ataqv",
-	"url": " https://rseng.github.io/software/repository/github/ParkerLab/ataqv",
-	"content": "A toolkit for QC and visualization of ATAC-seq results."
+	"github/nespinoza/exonailer": {
+	"id": "github/nespinoza/exonailer",
+	"title": "github/nespinoza/exonailer",
+	"url": " https://rseng.github.io/software/repository/github/nespinoza/exonailer",
+	"content": "Tools for fitting transiting exoplanet lightcurves and radial velocities"
 	},
-	"github/valboz/VBBinaryLensing": {
-	"id": "github/valboz/VBBinaryLensing",
-	"title": "github/valboz/VBBinaryLensing",
-	"url": " https://rseng.github.io/software/repository/github/valboz/VBBinaryLensing",
-	"content": "Microlensing light curve calculation"
+	"github/nespinoza/ld-exosim": {
+	"id": "github/nespinoza/ld-exosim",
+	"title": "github/nespinoza/ld-exosim",
+	"url": " https://rseng.github.io/software/repository/github/nespinoza/ld-exosim",
+	"content": "Code to simulate biases introduced by using different limb-darkening laws as explained in Espinoza &amp; Jordán (2016)"
 	},
-	"github/soerenslarsen/ISPy3": {
-	"id": "github/soerenslarsen/ISPy3",
-	"title": "github/soerenslarsen/ISPy3",
-	"url": " https://rseng.github.io/software/repository/github/soerenslarsen/ISPy3",
-	"content": "Tools for Integrated-light Spectroscopy with Python3"
+	"github/dglaeser/gridformat": {
+	"id": "github/dglaeser/gridformat",
+	"title": "github/dglaeser/gridformat",
+	"url": " https://rseng.github.io/software/repository/github/dglaeser/gridformat",
+	"content": "Header-only C++-Library for grid file I/O"
 	},
-	"github/coolneighbors/unwise-verse": {
-	"id": "github/coolneighbors/unwise-verse",
-	"title": "github/coolneighbors/unwise-verse",
-	"url": " https://rseng.github.io/software/repository/github/coolneighbors/unwise-verse",
-	"content": "Integrated flipbook / panoptes pipeline"
+	"github/pixixiaonaogou/MLSDR": {
+	"id": "github/pixixiaonaogou/MLSDR",
+	"title": "github/pixixiaonaogou/MLSDR",
+	"url": " https://rseng.github.io/software/repository/github/pixixiaonaogou/MLSDR",
+	"content": "None"
 	},
-	"github/r-spatial/rgee": {
-	"id": "github/r-spatial/rgee",
-	"title": "github/r-spatial/rgee",
-	"url": " https://rseng.github.io/software/repository/github/r-spatial/rgee",
-	"content": "Google Earth Engine for R"
+	"github/jeancmaia/mcglm": {
+	"id": "github/jeancmaia/mcglm",
+	"title": "github/jeancmaia/mcglm",
+	"url": " https://rseng.github.io/software/repository/github/jeancmaia/mcglm",
+	"content": "Python Framework for Multivariate Covariance Generalized Linear Models "
 	},
-	"github/AmruteLab/PyChelator": {
-	"id": "github/AmruteLab/PyChelator",
-	"title": "github/AmruteLab/PyChelator",
-	"url": " https://rseng.github.io/software/repository/github/AmruteLab/PyChelator",
-	"content": "PyChelator performs metal chelator calculations taking into account pH, temperature, and ionic strength"
+	"github/MichaelCretignier/Rassine_public": {
+	"id": "github/MichaelCretignier/Rassine_public",
+	"title": "github/MichaelCretignier/Rassine_public",
+	"url": " https://rseng.github.io/software/repository/github/MichaelCretignier/Rassine_public",
+	"content": "RASSINE is a code using alpha shape to normalise 1d spectra"
 	},
-	"github/jmhuie/Slicer-SegmentGeometry": {
-	"id": "github/jmhuie/Slicer-SegmentGeometry",
-	"title": "github/jmhuie/Slicer-SegmentGeometry",
-	"url": " https://rseng.github.io/software/repository/github/jmhuie/Slicer-SegmentGeometry",
-	"content": "Extension to calculate second moment of area and other cross-sectional properties in 3D Slicer"
+	"github/smillerc/CurvilinearGrids.jl": {
+	"id": "github/smillerc/CurvilinearGrids.jl",
+	"title": "github/smillerc/CurvilinearGrids.jl",
+	"url": " https://rseng.github.io/software/repository/github/smillerc/CurvilinearGrids.jl",
+	"content": "A Julia library for working with curvilinear grids"
 	},
-	"github/bccp/nbodykit": {
-	"id": "github/bccp/nbodykit",
-	"title": "github/bccp/nbodykit",
-	"url": " https://rseng.github.io/software/repository/github/bccp/nbodykit",
-	"content": "Analysis kit for large-scale structure datasets, the massively parallel way"
+	"github/andersdot/photoParallax": {
+	"id": "github/andersdot/photoParallax",
+	"title": "github/andersdot/photoParallax",
+	"url": " https://rseng.github.io/software/repository/github/andersdot/photoParallax",
+	"content": "data-driven photometric parallaxes, built with Gaia and 2MASS"
 	},
-	"github/yuliang419/AstroNet-Triage": {
-	"id": "github/yuliang419/AstroNet-Triage",
-	"title": "github/yuliang419/AstroNet-Triage",
-	"url": " https://rseng.github.io/software/repository/github/yuliang419/AstroNet-Triage",
-	"content": "A Neural Network for TESS Light Curve Triage"
+	"github/aviadpi/SparseBLS": {
+	"id": "github/aviadpi/SparseBLS",
+	"title": "github/aviadpi/SparseBLS",
+	"url": " https://rseng.github.io/software/repository/github/aviadpi/SparseBLS",
+	"content": "BoxFitting Least Squares - Implementation for Sparse data"
 	},
-	"github/yuliang419/AstroNet-Vetting": {
-	"id": "github/yuliang419/AstroNet-Vetting",
-	"title": "github/yuliang419/AstroNet-Vetting",
-	"url": " https://rseng.github.io/software/repository/github/yuliang419/AstroNet-Vetting",
-	"content": "A Neural Network for TESS Light Curve Vetting"
+	"github/pjcigan/pysymlog": {
+	"id": "github/pjcigan/pysymlog",
+	"title": "github/pjcigan/pysymlog",
+	"url": " https://rseng.github.io/software/repository/github/pjcigan/pysymlog",
+	"content": "Utilities for plotting in matplotlib, plotly, etc. using a symmetric or signed log transform. This allows the plotting of positive and negative data with a pseudo-log axis scale or stretch. "
 	},
-	"github/NCAS-CMS/cfdm": {
-	"id": "github/NCAS-CMS/cfdm",
-	"title": "github/NCAS-CMS/cfdm",
-	"url": " https://rseng.github.io/software/repository/github/NCAS-CMS/cfdm",
-	"content": "A Python reference implementation of the CF data model"
+	"github/pjcigan/multicolorfits": {
+	"id": "github/pjcigan/multicolorfits",
+	"title": "github/pjcigan/multicolorfits",
+	"url": " https://rseng.github.io/software/repository/github/pjcigan/multicolorfits",
+	"content": "Python tool for colorizing and combining fits images."
 	},
-	"github/mathopt/DynamicOED.jl": {
-	"id": "github/mathopt/DynamicOED.jl",
-	"title": "github/mathopt/DynamicOED.jl",
-	"url": " https://rseng.github.io/software/repository/github/mathopt/DynamicOED.jl",
-	"content": "Optimal experimental design of ODE and DAE systems in julia"
+	"github/pjcigan/obsplanning": {
+	"id": "github/pjcigan/obsplanning",
+	"title": "github/pjcigan/obsplanning",
+	"url": " https://rseng.github.io/software/repository/github/pjcigan/obsplanning",
+	"content": "Python tools for planning astronomical observations"
 	},
-	"github/kmsurrao/reMASTERed": {
-	"id": "github/kmsurrao/reMASTERed",
-	"title": "github/kmsurrao/reMASTERed",
-	"url": " https://rseng.github.io/software/repository/github/kmsurrao/reMASTERed",
-	"content": "Calculate contributions to pseudo-Cl for maps with correlated masks, based on https://arxiv.org/abs/2302.05436"
+	"github/thejasvibr/bat_beamshapes": {
+	"id": "github/thejasvibr/bat_beamshapes",
+	"title": "github/thejasvibr/bat_beamshapes",
+	"url": " https://rseng.github.io/software/repository/github/thejasvibr/bat_beamshapes",
+	"content": "Directivity functions for various sound sources"
 	},
-	"github/ahmedmagds/GNUVID": {
-	"id": "github/ahmedmagds/GNUVID",
-	"title": "github/ahmedmagds/GNUVID",
-	"url": " https://rseng.github.io/software/repository/github/ahmedmagds/GNUVID",
-	"content": "Gene Novelty Unit-based Virus Identification for SARS-CoV-2"
+	"github/rizkg/BBHash": {
+	"id": "github/rizkg/BBHash",
+	"title": "github/rizkg/BBHash",
+	"url": " https://rseng.github.io/software/repository/github/rizkg/BBHash",
+	"content": "Bloom-filter based minimal perfect hash function library"
 	},
-	"github/phipsonlab/propeller-paper-analysis": {
-	"id": "github/phipsonlab/propeller-paper-analysis",
-	"title": "github/phipsonlab/propeller-paper-analysis",
-	"url": " https://rseng.github.io/software/repository/github/phipsonlab/propeller-paper-analysis",
-	"content": "The website hosts the analysis and evaluation of different statistical methods for  determining differences in cell type proportions in single cell RNA-seq data."
+	"github/jmsdsouzaPhD/GWDALI": {
+	"id": "github/jmsdsouzaPhD/GWDALI",
+	"title": "github/jmsdsouzaPhD/GWDALI",
+	"url": " https://rseng.github.io/software/repository/github/jmsdsouzaPhD/GWDALI",
+	"content": "A Fisher-Based Software for Parameter Estimation from Gravitational Waves"
+	},
+	"github/jonbmartin/pulpy": {
+	"id": "github/jonbmartin/pulpy",
+	"title": "github/jonbmartin/pulpy",
+	"url": " https://rseng.github.io/software/repository/github/jonbmartin/pulpy",
+	"content": "Pulses in Python"
+	},
+	"github/hdeeg/KvW": {
+	"id": "github/hdeeg/KvW",
+	"title": "github/hdeeg/KvW",
+	"url": " https://rseng.github.io/software/repository/github/hdeeg/KvW",
+	"content": "Kwee Van Woerden algorithm for eclipse or transit minimum timing, with improved error calculation"
 	},
-	"github/aamedinburgh/igmtransmission": {
-	"id": "github/aamedinburgh/igmtransmission",
-	"title": "github/aamedinburgh/igmtransmission",
-	"url": " https://rseng.github.io/software/repository/github/aamedinburgh/igmtransmission",
-	"content": "Automatically exported from code.google.com/p/igmtransmission"
+	"github/jfarek/xatlas": {
+	"id": "github/jfarek/xatlas",
+	"title": "github/jfarek/xatlas",
+	"url": " https://rseng.github.io/software/repository/github/jfarek/xatlas",
+	"content": "xAtlas is a fast and retrainable small variant caller that has been developed at the Baylor College of Medicine Human Genome Sequencing Center."
 	},
-	"github/genotoul-bioinfo/dgenies": {
-	"id": "github/genotoul-bioinfo/dgenies",
-	"title": "github/genotoul-bioinfo/dgenies",
-	"url": " https://rseng.github.io/software/repository/github/genotoul-bioinfo/dgenies",
-	"content": "Dotplot large Genomes in an Interactive, Efficient and Simple way"
+	"github/jfarek/alignstats": {
+	"id": "github/jfarek/alignstats",
+	"title": "github/jfarek/alignstats",
+	"url": " https://rseng.github.io/software/repository/github/jfarek/alignstats",
+	"content": "Comprehensive alignment, whole-genome coverage, and capture coverage statistics."
 	},
-	"github/genotoul-bioinfo/Binette": {
-	"id": "github/genotoul-bioinfo/Binette",
-	"title": "github/genotoul-bioinfo/Binette",
-	"url": " https://rseng.github.io/software/repository/github/genotoul-bioinfo/Binette",
-	"content": "A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools."
+	"github/PapenfussLab/gridss": {
+	"id": "github/PapenfussLab/gridss",
+	"title": "github/PapenfussLab/gridss",
+	"url": " https://rseng.github.io/software/repository/github/PapenfussLab/gridss",
+	"content": "GRIDSS: the Genomic Rearrangement IDentification Software Suite"
 	},
-	"github/warrickball/tomso": {
-	"id": "github/warrickball/tomso",
-	"title": "github/warrickball/tomso",
-	"url": " https://rseng.github.io/software/repository/github/warrickball/tomso",
-	"content": "TOMSO (Tools for Models of Stars and their Oscillations) is a set of Python modules for loading and saving input and output files for and from stellar evolution and oscillation codes."
+	"github/thraraujo/pysymmpol": {
+	"id": "github/thraraujo/pysymmpol",
+	"title": "github/thraraujo/pysymmpol",
+	"url": " https://rseng.github.io/software/repository/github/thraraujo/pysymmpol",
+	"content": "A Python package for calculating and performing basic manipulations on symmetric polynomials."
 	},
-	"github/DEIB-GECO/VarSum": {
-	"id": "github/DEIB-GECO/VarSum",
-	"title": "github/DEIB-GECO/VarSum",
-	"url": " https://rseng.github.io/software/repository/github/DEIB-GECO/VarSum",
-	"content": "Data summarization tool for 1000 Genomes Project data"
+	"github/pikarpov-LANL/Sapsan": {
+	"id": "github/pikarpov-LANL/Sapsan",
+	"title": "github/pikarpov-LANL/Sapsan",
+	"url": " https://rseng.github.io/software/repository/github/pikarpov-LANL/Sapsan",
+	"content": "ML-based turbulence modeling for astrophysics"
 	},
-	"github/DEIB-GECO/BC_Intrinsic_subtyping": {
-	"id": "github/DEIB-GECO/BC_Intrinsic_subtyping",
-	"title": "github/DEIB-GECO/BC_Intrinsic_subtyping",
-	"url": " https://rseng.github.io/software/repository/github/DEIB-GECO/BC_Intrinsic_subtyping",
-	"content": "None"
+	"github/DotBots/qrkey": {
+	"id": "github/DotBots/qrkey",
+	"title": "github/DotBots/qrkey",
+	"url": " https://rseng.github.io/software/repository/github/DotBots/qrkey",
+	"content": "Simply and Securely Control Robots Swarms"
 	},
-	"github/DEIB-GECO/genereg": {
-	"id": "github/DEIB-GECO/genereg",
-	"title": "github/DEIB-GECO/genereg",
-	"url": " https://rseng.github.io/software/repository/github/DEIB-GECO/genereg",
-	"content": "Python library for the analysis of gene expression regulation systems of genes of interest in TCGA cancers."
+	"github/mtlam/PyPulse": {
+	"id": "github/mtlam/PyPulse",
+	"title": "github/mtlam/PyPulse",
+	"url": " https://rseng.github.io/software/repository/github/mtlam/PyPulse",
+	"content": "Python package for handling and analyzing PSRFITS files"
 	},
-	"github/DEIB-GECO/GeneNetFusion": {
-	"id": "github/DEIB-GECO/GeneNetFusion",
-	"title": "github/DEIB-GECO/GeneNetFusion",
-	"url": " https://rseng.github.io/software/repository/github/DEIB-GECO/GeneNetFusion",
-	"content": "None"
+	"github/sebhaan/geobo": {
+	"id": "github/sebhaan/geobo",
+	"title": "github/sebhaan/geobo",
+	"url": " https://rseng.github.io/software/repository/github/sebhaan/geobo",
+	"content": "Python package for Multi-Objective Bayesian Optimisation and Joint Inversion"
 	},
-	"github/DEIB-GECO/CombSAFE": {
-	"id": "github/DEIB-GECO/CombSAFE",
-	"title": "github/DEIB-GECO/CombSAFE",
-	"url": " https://rseng.github.io/software/repository/github/DEIB-GECO/CombSAFE",
-	"content": "Combinatorial and Semantic Analysis of Functional Elements"
+	"github/mnets/pymnet": {
+	"id": "github/mnets/pymnet",
+	"title": "github/mnets/pymnet",
+	"url": " https://rseng.github.io/software/repository/github/mnets/pymnet",
+	"content": "The original library for analyzing multilayer networks."
 	},
-	"github/DEIB-GECO/ReRa": {
-	"id": "github/DEIB-GECO/ReRa",
-	"title": "github/DEIB-GECO/ReRa",
-	"url": " https://rseng.github.io/software/repository/github/DEIB-GECO/ReRa",
-	"content": "Supervised Relevance-Redundancy assessments for feature selection in omics-based classification"
+	"github/pmelchior/des-exp-checker": {
+	"id": "github/pmelchior/des-exp-checker",
+	"title": "github/pmelchior/des-exp-checker",
+	"url": " https://rseng.github.io/software/repository/github/pmelchior/des-exp-checker",
+	"content": "Crowdsourced image quality control for the Dark Energy Survey"
 	},
-	"github/DEIB-GECO/MutViz": {
-	"id": "github/DEIB-GECO/MutViz",
-	"title": "github/DEIB-GECO/MutViz",
-	"url": " https://rseng.github.io/software/repository/github/DEIB-GECO/MutViz",
-	"content": "MutViz - Analysis and Visualization of Mutation Enrichments for Selected Genomic Regions and Cancer Types"
+	"github/pmelchior/scarlet": {
+	"id": "github/pmelchior/scarlet",
+	"title": "github/pmelchior/scarlet",
+	"url": " https://rseng.github.io/software/repository/github/pmelchior/scarlet",
+	"content": "hyperspectral galaxy modeling and deblending"
 	},
-	"github/DEIB-GECO/CRIS_single-sample": {
-	"id": "github/DEIB-GECO/CRIS_single-sample",
-	"title": "github/DEIB-GECO/CRIS_single-sample",
-	"url": " https://rseng.github.io/software/repository/github/DEIB-GECO/CRIS_single-sample",
-	"content": "Single-sample classifiers for CRIS on colorectal cancer data"
+	"github/pmelchior/shear-stacking": {
+	"id": "github/pmelchior/shear-stacking",
+	"title": "github/pmelchior/shear-stacking",
+	"url": " https://rseng.github.io/software/repository/github/pmelchior/shear-stacking",
+	"content": "Stacked shear profiles and tests based upon them"
 	},
-	"github/DEIB-GECO/OpenGDC": {
-	"id": "github/DEIB-GECO/OpenGDC",
-	"title": "github/DEIB-GECO/OpenGDC",
-	"url": " https://rseng.github.io/software/repository/github/DEIB-GECO/OpenGDC",
-	"content": "An open-source Java tool to automatically extract and convert all clinical and genomic data from the Genomic Data Commons to BED, GTF, CSV, and JSON format"
+	"github/pmelchior/epsnoise": {
+	"id": "github/pmelchior/epsnoise",
+	"title": "github/pmelchior/epsnoise",
+	"url": " https://rseng.github.io/software/repository/github/pmelchior/epsnoise",
+	"content": "Simulate pixel noise for weak-lensing ellipticity measurements"
 	},
-	"github/WatsonLab/MAGpy": {
-	"id": "github/WatsonLab/MAGpy",
-	"title": "github/WatsonLab/MAGpy",
-	"url": " https://rseng.github.io/software/repository/github/WatsonLab/MAGpy",
-	"content": "Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)"
+	"github/pmelchior/pyGMMis": {
+	"id": "github/pmelchior/pyGMMis",
+	"title": "github/pmelchior/pyGMMis",
+	"url": " https://rseng.github.io/software/repository/github/pmelchior/pyGMMis",
+	"content": "Gaussian mixture model for incomplete (missing or truncated) and noisy data"
 	},
-	"github/mrirecon/bart": {
-	"id": "github/mrirecon/bart",
-	"title": "github/mrirecon/bart",
-	"url": " https://rseng.github.io/software/repository/github/mrirecon/bart",
-	"content": "BART: Toolbox for Computational Magnetic Resonance Imaging"
+	"github/pmelchior/skylens": {
+	"id": "github/pmelchior/skylens",
+	"title": "github/pmelchior/skylens",
+	"url": " https://rseng.github.io/software/repository/github/pmelchior/skylens",
+	"content": "SkyLens++ is a simulation package for optical astronomical observations."
 	},
-	"github/mrirecon/view": {
-	"id": "github/mrirecon/view",
-	"title": "github/mrirecon/view",
-	"url": " https://rseng.github.io/software/repository/github/mrirecon/view",
-	"content": "Image Viewer for BART"
+	"github/pmelchior/shapelens": {
+	"id": "github/pmelchior/shapelens",
+	"title": "github/pmelchior/shapelens",
+	"url": " https://rseng.github.io/software/repository/github/pmelchior/shapelens",
+	"content": "Astronomical image analysis and shape estimation framework"
 	},
-	"github/ProjectPyRhO/PyRhO": {
-	"id": "github/ProjectPyRhO/PyRhO",
-	"title": "github/ProjectPyRhO/PyRhO",
-	"url": " https://rseng.github.io/software/repository/github/ProjectPyRhO/PyRhO",
-	"content": "A virtual optogenetics laboratory"
+	"github/pmelchior/skymapper": {
+	"id": "github/pmelchior/skymapper",
+	"title": "github/pmelchior/skymapper",
+	"url": " https://rseng.github.io/software/repository/github/pmelchior/skymapper",
+	"content": "Mapping astronomical survey data on the sky, handsomely"
 	},
-	"github/MiguelEA/nudec_BSM": {
-	"id": "github/MiguelEA/nudec_BSM",
-	"title": "github/MiguelEA/nudec_BSM",
-	"url": " https://rseng.github.io/software/repository/github/MiguelEA/nudec_BSM",
-	"content": "Neutrino Decoupling Beyond the Standard Model"
+	"github/pmelchior/spender": {
+	"id": "github/pmelchior/spender",
+	"title": "github/pmelchior/spender",
+	"url": " https://rseng.github.io/software/repository/github/pmelchior/spender",
+	"content": "Spectrum encoder and decoder"
 	},
-	"github/bxlab/bx-python": {
-	"id": "github/bxlab/bx-python",
-	"title": "github/bxlab/bx-python",
-	"url": " https://rseng.github.io/software/repository/github/bxlab/bx-python",
-	"content": "Tools for manipulating biological data, particularly multiple sequence alignments"
+	"github/ConnorDonegan/geostan": {
+	"id": "github/ConnorDonegan/geostan",
+	"title": "github/ConnorDonegan/geostan",
+	"url": " https://rseng.github.io/software/repository/github/ConnorDonegan/geostan",
+	"content": "Bayesian spatial analysis"
 	},
-	"github/bxlab/metaWRAP": {
-	"id": "github/bxlab/metaWRAP",
-	"title": "github/bxlab/metaWRAP",
-	"url": " https://rseng.github.io/software/repository/github/bxlab/metaWRAP",
-	"content": "MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis"
+	"github/reproducible-biomedical-modeling/Biosimulations": {
+	"id": "github/reproducible-biomedical-modeling/Biosimulations",
+	"title": "github/reproducible-biomedical-modeling/Biosimulations",
+	"url": " https://rseng.github.io/software/repository/github/reproducible-biomedical-modeling/Biosimulations",
+	"content": "Platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results"
 	},
-	"github/sylvainprigent/napari-tracks-reader": {
-	"id": "github/sylvainprigent/napari-tracks-reader",
-	"title": "github/sylvainprigent/napari-tracks-reader",
-	"url": " https://rseng.github.io/software/repository/github/sylvainprigent/napari-tracks-reader",
-	"content": "napari reader plugin for tracking"
+	"github/damar-wicaksono/uqtestfuns": {
+	"id": "github/damar-wicaksono/uqtestfuns",
+	"title": "github/damar-wicaksono/uqtestfuns",
+	"url": " https://rseng.github.io/software/repository/github/damar-wicaksono/uqtestfuns",
+	"content": "A Python3 library of test functions from the uncertainty quantification community with a common interface for validation and benchmarking purposes."
 	},
-	"github/marberts/piar": {
-	"id": "github/marberts/piar",
-	"title": "github/marberts/piar",
-	"url": " https://rseng.github.io/software/repository/github/marberts/piar",
-	"content": "Price index aggregation in R"
+	"github/sihanjiao/j-comb": {
+	"id": "github/sihanjiao/j-comb",
+	"title": "github/sihanjiao/j-comb",
+	"url": " https://rseng.github.io/software/repository/github/sihanjiao/j-comb",
+	"content": "None"
 	},
-	"github/pmvreeswijk/ZOGY": {
-	"id": "github/pmvreeswijk/ZOGY",
-	"title": "github/pmvreeswijk/ZOGY",
-	"url": " https://rseng.github.io/software/repository/github/pmvreeswijk/ZOGY",
-	"content": "a Python implementation of proper image subtraction (Zackay, Ofek &amp; Gal-Yam 2016, ApJ, 830, 27)"
+	"github/ajeldorado/falco-python": {
+	"id": "github/ajeldorado/falco-python",
+	"title": "github/ajeldorado/falco-python",
+	"url": " https://rseng.github.io/software/repository/github/ajeldorado/falco-python",
+	"content": "Fast Linearized Coronagraph Optimizer (FALCO) in Python 3"
 	},
-	"github/pmvreeswijk/BlackBOX": {
-	"id": "github/pmvreeswijk/BlackBOX",
-	"title": "github/pmvreeswijk/BlackBOX",
-	"url": " https://rseng.github.io/software/repository/github/pmvreeswijk/BlackBOX",
-	"content": "image processing sofware specifically for the reduction of BlackGEM and MeerLICHT images"
+	"github/ajeldorado/falco-matlab": {
+	"id": "github/ajeldorado/falco-matlab",
+	"title": "github/ajeldorado/falco-matlab",
+	"url": " https://rseng.github.io/software/repository/github/ajeldorado/falco-matlab",
+	"content": "Fast Linearized Coronagraph Optimizer (FALCO) in MATLAB"
 	},
-	"github/gianthk/ciclope": {
-	"id": "github/gianthk/ciclope",
-	"title": "github/gianthk/ciclope",
-	"url": " https://rseng.github.io/software/repository/github/gianthk/ciclope",
-	"content": "Computed Tomography to Finite Elements"
+	"github/vocalpy/crowsetta": {
+	"id": "github/vocalpy/crowsetta",
+	"title": "github/vocalpy/crowsetta",
+	"url": " https://rseng.github.io/software/repository/github/vocalpy/crowsetta",
+	"content": "A tool to work with any format for annotating vocalizations"
 	},
-	"github/TomKellyGenetics/graphsim": {
-	"id": "github/TomKellyGenetics/graphsim",
-	"title": "github/TomKellyGenetics/graphsim",
-	"url": " https://rseng.github.io/software/repository/github/TomKellyGenetics/graphsim",
-	"content": "R package: Simulate Expression data from igraph network using mvtnorm (multivariate normal)."
+	"github/WatsonGroupTCD/J2suscep": {
+	"id": "github/WatsonGroupTCD/J2suscep",
+	"title": "github/WatsonGroupTCD/J2suscep",
+	"url": " https://rseng.github.io/software/repository/github/WatsonGroupTCD/J2suscep",
+	"content": "See https://github.com/WatsonGroupTCD/J2suscep/wiki"
 	},
-	"github/hypre-space/hypredrive": {
-	"id": "github/hypre-space/hypredrive",
-	"title": "github/hypre-space/hypredrive",
-	"url": " https://rseng.github.io/software/repository/github/hypre-space/hypredrive",
-	"content": "High-level interface for solving linear systems with hypre"
+	"github/PeterKamphuis/FAT": {
+	"id": "github/PeterKamphuis/FAT",
+	"title": "github/PeterKamphuis/FAT",
+	"url": " https://rseng.github.io/software/repository/github/PeterKamphuis/FAT",
+	"content": "An IDL/GDL wrapper to automate TiRiFiC"
 	},
-	"github/dalya/WeirdestGalaxies": {
-	"id": "github/dalya/WeirdestGalaxies",
-	"title": "github/dalya/WeirdestGalaxies",
-	"url": " https://rseng.github.io/software/repository/github/dalya/WeirdestGalaxies",
-	"content": "This repository contains the basic outlier detection algorithm that we use to find the weirdest SDSS galaxies."
+	"github/PeterKamphuis/pyFAT-astro": {
+	"id": "github/PeterKamphuis/pyFAT-astro",
+	"title": "github/PeterKamphuis/pyFAT-astro",
+	"url": " https://rseng.github.io/software/repository/github/PeterKamphuis/pyFAT-astro",
+	"content": "Python3 version of FAT. Extensive documentation can be found at https://pyfat-astro.readthedocs.io/en/latest/"
 	},
-	"github/bbye98/mdcraft": {
-	"id": "github/bbye98/mdcraft",
-	"title": "github/bbye98/mdcraft",
-	"url": " https://rseng.github.io/software/repository/github/bbye98/mdcraft",
-	"content": "A Python assistant for performing and analyzing molecular dynamics simulations of soft matter systems"
+	"github/xraypy/xraylarch": {
+	"id": "github/xraypy/xraylarch",
+	"title": "github/xraypy/xraylarch",
+	"url": " https://rseng.github.io/software/repository/github/xraypy/xraylarch",
+	"content": "Larch: Applications and Python Library for Data Analysis of X-ray Absorption Spectroscopy (XAS, XANES, XAFS, EXAFS), X-ray Fluorescence (XRF) Spectroscopy and Imaging, and more."
 	},
-	"github/D-Crake/HEADSS": {
-	"id": "github/D-Crake/HEADSS",
-	"title": "github/D-Crake/HEADSS",
-	"url": " https://rseng.github.io/software/repository/github/D-Crake/HEADSS",
-	"content": "HiErArchical Data Splitting and Stitching Software for Non-Distributed Clustering Algorithms"
+	"github/fforster/delight": {
+	"id": "github/fforster/delight",
+	"title": "github/fforster/delight",
+	"url": " https://rseng.github.io/software/repository/github/fforster/delight",
+	"content": "Deep Learning Identification of Galaxy Hosts in Transients"
 	},
-	"github/cheng-zhao/FCFC": {
-	"id": "github/cheng-zhao/FCFC",
-	"title": "github/cheng-zhao/FCFC",
-	"url": " https://rseng.github.io/software/repository/github/cheng-zhao/FCFC",
-	"content": "Fast Correlation Function Calculator"
+	"github/podondra/bayesian-sznet": {
+	"id": "github/podondra/bayesian-sznet",
+	"title": "github/podondra/bayesian-sznet",
+	"url": " https://rseng.github.io/software/repository/github/podondra/bayesian-sznet",
+	"content": "Bayesian deep learning to predict redshift with uncertainty"
 	},
-	"github/PyPO-dev/PyPO": {
-	"id": "github/PyPO-dev/PyPO",
-	"title": "github/PyPO-dev/PyPO",
-	"url": " https://rseng.github.io/software/repository/github/PyPO-dev/PyPO",
-	"content": "📡 Open-source physical optics simulation package."
+	"github/podondra/eidein": {
+	"id": "github/podondra/eidein",
+	"title": "github/podondra/eidein",
+	"url": " https://rseng.github.io/software/repository/github/podondra/eidein",
+	"content": "Interactive tool for dimensionality reduction of spectra and their visualisation"
 	},
-	"github/hues-platform/cesar-p-core": {
-	"id": "github/hues-platform/cesar-p-core",
-	"title": "github/hues-platform/cesar-p-core",
-	"url": " https://rseng.github.io/software/repository/github/hues-platform/cesar-p-core",
-	"content": "CESAR-P code library"
+	"github/pavolgaj/OCFit": {
+	"id": "github/pavolgaj/OCFit",
+	"title": "github/pavolgaj/OCFit",
+	"url": " https://rseng.github.io/software/repository/github/pavolgaj/OCFit",
+	"content": "Python package for fitting of O-C diagrams."
 	},
-	"github/aiproteomics/aiproteomics": {
-	"id": "github/aiproteomics/aiproteomics",
-	"title": "github/aiproteomics/aiproteomics",
-	"url": " https://rseng.github.io/software/repository/github/aiproteomics/aiproteomics",
-	"content": "A package for MSMS spectral library prediction models from the field of (phospho-)proteomics, intended to facilitate the testing and comparison of different neural network architectures and existing models."
+	"github/pavolgaj/ObsPlanner": {
+	"id": "github/pavolgaj/ObsPlanner",
+	"title": "github/pavolgaj/ObsPlanner",
+	"url": " https://rseng.github.io/software/repository/github/pavolgaj/ObsPlanner",
+	"content": "Simple program for planning and managing astronomical observations"
 	},
-	"github/cbio-astar-tools/GeneCloudOmics": {
-	"id": "github/cbio-astar-tools/GeneCloudOmics",
-	"title": "github/cbio-astar-tools/GeneCloudOmics",
-	"url": " https://rseng.github.io/software/repository/github/cbio-astar-tools/GeneCloudOmics",
-	"content": "A Biostatistical tool for Transcriptomics Analysis"
+	"github/hytrac/amber": {
+	"id": "github/hytrac/amber",
+	"title": "github/hytrac/amber",
+	"url": " https://rseng.github.io/software/repository/github/hytrac/amber",
+	"content": "The Abundance Matching Box for the Epoch of Reionization (AMBER) is a semi-numerical code for modeling the cosmic dawn and reionization."
 	},
-	"github/NicolasHug/Surprise": {
-	"id": "github/NicolasHug/Surprise",
-	"title": "github/NicolasHug/Surprise",
-	"url": " https://rseng.github.io/software/repository/github/NicolasHug/Surprise",
-	"content": "A Python scikit for building and analyzing recommender systems"
+	"github/kiyo-masui/bitshuffle": {
+	"id": "github/kiyo-masui/bitshuffle",
+	"title": "github/kiyo-masui/bitshuffle",
+	"url": " https://rseng.github.io/software/repository/github/kiyo-masui/bitshuffle",
+	"content": "Filter for improving compression of typed binary data."
 	},
-	"github/SSDataLab/vetting": {
-	"id": "github/SSDataLab/vetting",
-	"title": "github/SSDataLab/vetting",
-	"url": " https://rseng.github.io/software/repository/github/SSDataLab/vetting",
-	"content": "Simple, stand-alone tools for vetting transit signals in Kepler, K2 and TESS data"
+	"github/moranegg/deposit-template": {
+	"id": "github/moranegg/deposit-template",
+	"title": "github/moranegg/deposit-template",
+	"url": " https://rseng.github.io/software/repository/github/moranegg/deposit-template",
+	"content": "This is a deposit template repository to help researchers in starting their project in a online VCS"
 	},
-	"github/SSDataLab/psfmachine": {
-	"id": "github/SSDataLab/psfmachine",
-	"title": "github/SSDataLab/psfmachine",
-	"url": " https://rseng.github.io/software/repository/github/SSDataLab/psfmachine",
-	"content": "Tool kit for doing PSF photometry"
+	"github/moranegg/AffectationRO": {
+	"id": "github/moranegg/AffectationRO",
+	"title": "github/moranegg/AffectationRO",
+	"url": " https://rseng.github.io/software/repository/github/moranegg/AffectationRO",
+	"content": "Projet en recherche opérationelle "
 	},
-	"github/simoncasassus/ConeRot": {
-	"id": "github/simoncasassus/ConeRot",
-	"title": "github/simoncasassus/ConeRot",
-	"url": " https://rseng.github.io/software/repository/github/simoncasassus/ConeRot",
-	"content": "None"
+	"github/tpospisi/cdetools": {
+	"id": "github/tpospisi/cdetools",
+	"title": "github/tpospisi/cdetools",
+	"url": " https://rseng.github.io/software/repository/github/tpospisi/cdetools",
+	"content": "Tools for Conditional Density Estimates"
 	},
-	"github/eEcoLiDAR/Laserfarm": {
-	"id": "github/eEcoLiDAR/Laserfarm",
-	"title": "github/eEcoLiDAR/Laserfarm",
-	"url": " https://rseng.github.io/software/repository/github/eEcoLiDAR/Laserfarm",
-	"content": "Laserchicken Framework for Applications in Research in Macro-ecology"
+	"github/tpospisi/RFCDE": {
+	"id": "github/tpospisi/RFCDE",
+	"title": "github/tpospisi/RFCDE",
+	"url": " https://rseng.github.io/software/repository/github/tpospisi/RFCDE",
+	"content": "Random Forests for Conditional Density Estimation"
 	},
-	"github/eEcoLiDAR/laserchicken": {
-	"id": "github/eEcoLiDAR/laserchicken",
-	"title": "github/eEcoLiDAR/laserchicken",
-	"url": " https://rseng.github.io/software/repository/github/eEcoLiDAR/laserchicken",
-	"content": "None"
+	"github/tpospisi/nnkcde": {
+	"id": "github/tpospisi/nnkcde",
+	"title": "github/tpospisi/nnkcde",
+	"url": " https://rseng.github.io/software/repository/github/tpospisi/nnkcde",
+	"content": "Nearest Neighbor Kernel Conditional Density Estimation"
 	},
-	"github/frank1010111/pywaterflood": {
-	"id": "github/frank1010111/pywaterflood",
-	"title": "github/frank1010111/pywaterflood",
-	"url": " https://rseng.github.io/software/repository/github/frank1010111/pywaterflood",
-	"content": "Capacitance resistance models for waterflood connectivity"
+	"github/jesford/cluster-lensing": {
+	"id": "github/jesford/cluster-lensing",
+	"title": "github/jesford/cluster-lensing",
+	"url": " https://rseng.github.io/software/repository/github/jesford/cluster-lensing",
+	"content": "Galaxy Cluster and Weak Lensing Tools"
 	},
-	"github/frank1010111/bluebonnet": {
-	"id": "github/frank1010111/bluebonnet",
-	"title": "github/frank1010111/bluebonnet",
-	"url": " https://rseng.github.io/software/repository/github/frank1010111/bluebonnet",
-	"content": "Scaling solutions for production analysis from unconventional oil and gas wells"
+	"github/gbouras13/plassembler": {
+	"id": "github/gbouras13/plassembler",
+	"title": "github/gbouras13/plassembler",
+	"url": " https://rseng.github.io/software/repository/github/gbouras13/plassembler",
+	"content": "Program to quickly and accurately assemble plasmids in hybrid sequenced bacterial isolates"
 	},
-	"github/logological/gpp": {
-	"id": "github/logological/gpp",
-	"title": "github/logological/gpp",
-	"url": " https://rseng.github.io/software/repository/github/logological/gpp",
-	"content": "GPP, a generic preprocessor"
+	"github/trevisanj/PFANT": {
+	"id": "github/trevisanj/PFANT",
+	"title": "github/trevisanj/PFANT",
+	"url": " https://rseng.github.io/software/repository/github/trevisanj/PFANT",
+	"content": "Stellar Spectral Synthesis code for Astronomy"
 	},
-	"github/xfcui/onn4arg": {
-	"id": "github/xfcui/onn4arg",
-	"title": "github/xfcui/onn4arg",
-	"url": " https://rseng.github.io/software/repository/github/xfcui/onn4arg",
+	"github/ExoSim/ExoSimPublic": {
+	"id": "github/ExoSim/ExoSimPublic",
+	"title": "github/ExoSim/ExoSimPublic",
+	"url": " https://rseng.github.io/software/repository/github/ExoSim/ExoSimPublic",
 	"content": "None"
 	},
-	"github/aspuru-guzik-group/funsies": {
-	"id": "github/aspuru-guzik-group/funsies",
-	"title": "github/aspuru-guzik-group/funsies",
-	"url": " https://rseng.github.io/software/repository/github/aspuru-guzik-group/funsies",
-	"content": "funsies is a lightweight workflow engine 🔧"
-	},
-	"github/astro-friedel/CADRE": {
-	"id": "github/astro-friedel/CADRE",
-	"title": "github/astro-friedel/CADRE",
-	"url": " https://rseng.github.io/software/repository/github/astro-friedel/CADRE",
-	"content": "CARMA Data Reduction Pipeline"
+	"github/zooniverse/starpy": {
+	"id": "github/zooniverse/starpy",
+	"title": "github/zooniverse/starpy",
+	"url": " https://rseng.github.io/software/repository/github/zooniverse/starpy",
+	"content": "Code to determine sfh parameters of galaxy populations with emcee"
 	},
-	"github/dynamicslab/pysindy": {
-	"id": "github/dynamicslab/pysindy",
-	"title": "github/dynamicslab/pysindy",
-	"url": " https://rseng.github.io/software/repository/github/dynamicslab/pysindy",
-	"content": "A package for the sparse identification of nonlinear dynamical systems from data"
+	"github/steineggerlab/foldmason": {
+	"id": "github/steineggerlab/foldmason",
+	"title": "github/steineggerlab/foldmason",
+	"url": " https://rseng.github.io/software/repository/github/steineggerlab/foldmason",
+	"content": "Multiple Protein Structure Alignment at Scale with FoldMason"
 	},
-	"github/alexander-shen/rtest": {
-	"id": "github/alexander-shen/rtest",
-	"title": "github/alexander-shen/rtest",
-	"url": " https://rseng.github.io/software/repository/github/alexander-shen/rtest",
-	"content": "Robust tests of randomness adapted from different sources"
+	"github/steineggerlab/foldseek": {
+	"id": "github/steineggerlab/foldseek",
+	"title": "github/steineggerlab/foldseek",
+	"url": " https://rseng.github.io/software/repository/github/steineggerlab/foldseek",
+	"content": "Foldseek enables fast and sensitive comparisons of large structure sets."
 	},
-	"github/NERDSITU/superblockify": {
-	"id": "github/NERDSITU/superblockify",
-	"title": "github/NERDSITU/superblockify",
-	"url": " https://rseng.github.io/software/repository/github/NERDSITU/superblockify",
-	"content": "Source code for superblockify"
+	"github/mathLab/PINA": {
+	"id": "github/mathLab/PINA",
+	"title": "github/mathLab/PINA",
+	"url": " https://rseng.github.io/software/repository/github/mathLab/PINA",
+	"content": "Physics-Informed Neural networks for Advanced modeling"
 	},
-	"github/jakelangham/kestrel": {
-	"id": "github/jakelangham/kestrel",
-	"title": "github/jakelangham/kestrel",
-	"url": " https://rseng.github.io/software/repository/github/jakelangham/kestrel",
-	"content": "Software for simulations of sediment-laden Earth surface flows"
+	"github/tcallister/autoregressive-bbh-inference": {
+	"id": "github/tcallister/autoregressive-bbh-inference",
+	"title": "github/tcallister/autoregressive-bbh-inference",
+	"url": " https://rseng.github.io/software/repository/github/tcallister/autoregressive-bbh-inference",
+	"content": "This repository holds code and data release products behind the paper &#34;A parameter-free tour of the binary black hole population&#34;"
 	},
-	"github/rice-solar-physics/EBTEL": {
-	"id": "github/rice-solar-physics/EBTEL",
-	"title": "github/rice-solar-physics/EBTEL",
-	"url": " https://rseng.github.io/software/repository/github/rice-solar-physics/EBTEL",
-	"content": "Enthalpy-Based Thermal Evolution of Loops (EBTEL) model coded in the IDL language by J. A. Klimchuk, S. Patsourakos, and P.J. Cargill "
+	"github/maayane/catsHTM": {
+	"id": "github/maayane/catsHTM",
+	"title": "github/maayane/catsHTM",
+	"url": " https://rseng.github.io/software/repository/github/maayane/catsHTM",
+	"content": "A tool for fast accessing and cross-matching large astronomical catalogs"
 	},
-	"github/pilon/wiki": {
-	"id": "github/pilon/wiki",
-	"title": "github/pilon/wiki",
-	"url": " https://rseng.github.io/software/repository/github/pilon/wiki",
-	"content": "Pilon is a software tool which can be used to automatically improve draft assemblies and find variation among strains, including large event detection."
+	"github/bruce-chappell/SunnyNet": {
+	"id": "github/bruce-chappell/SunnyNet",
+	"title": "github/bruce-chappell/SunnyNet",
+	"url": " https://rseng.github.io/software/repository/github/bruce-chappell/SunnyNet",
+	"content": "Repository for SunnyNet network"
 	},
-	"github/seawander/DebrisDiskFM": {
-	"id": "github/seawander/DebrisDiskFM",
-	"title": "github/seawander/DebrisDiskFM",
-	"url": " https://rseng.github.io/software/repository/github/seawander/DebrisDiskFM",
-	"content": "Debris Disk Forward Modeling"
+	"github/DreamCloud-Project/McSim-TLM-NoC": {
+	"id": "github/DreamCloud-Project/McSim-TLM-NoC",
+	"title": "github/DreamCloud-Project/McSim-TLM-NoC",
+	"url": " https://rseng.github.io/software/repository/github/DreamCloud-Project/McSim-TLM-NoC",
+	"content": "Manycore platform Simulation tool for NoC-based platform at a Transactional Level Modeling level"
 	},
-	"github/seawander/centerRadon": {
-	"id": "github/seawander/centerRadon",
-	"title": "github/seawander/centerRadon",
-	"url": " https://rseng.github.io/software/repository/github/seawander/centerRadon",
-	"content": "Center determination code based on Radon Transform"
+	"github/DreamCloud-Project/McSim-Cycle-accurate-Xbar": {
+	"id": "github/DreamCloud-Project/McSim-Cycle-accurate-Xbar",
+	"title": "github/DreamCloud-Project/McSim-Cycle-accurate-Xbar",
+	"url": " https://rseng.github.io/software/repository/github/DreamCloud-Project/McSim-Cycle-accurate-Xbar",
+	"content": "Manycore platform Simulation tool for crossbar-based platform at a Cycle-accurate level"
 	},
-	"github/winni2k/abeona": {
-	"id": "github/winni2k/abeona",
-	"title": "github/winni2k/abeona",
-	"url": " https://rseng.github.io/software/repository/github/winni2k/abeona",
-	"content": "abeona -- Abeona is the goddess of outward graph traversal"
+	"github/DreamCloud-Project/AMALTHEA-Microworkload-Generator": {
+	"id": "github/DreamCloud-Project/AMALTHEA-Microworkload-Generator",
+	"title": "github/DreamCloud-Project/AMALTHEA-Microworkload-Generator",
+	"url": " https://rseng.github.io/software/repository/github/DreamCloud-Project/AMALTHEA-Microworkload-Generator",
+	"content": "Command line tool generating micro workloads from an AMALTHEA application"
 	},
-	"github/anddssan/CLOUDe": {
-	"id": "github/anddssan/CLOUDe",
-	"title": "github/anddssan/CLOUDe",
-	"url": " https://rseng.github.io/software/repository/github/anddssan/CLOUDe",
-	"content": "CLOUDe is an R implementation of Campelo dos Santos, DeGiorgio and Assis&#39; (2023) suite of machine learning methods for predicting evolutionary targets of gene deletion events from expression data in two species."
+	"github/DreamCloud-Project/AMALTHEA-SimGrid": {
+	"id": "github/DreamCloud-Project/AMALTHEA-SimGrid",
+	"title": "github/DreamCloud-Project/AMALTHEA-SimGrid",
+	"url": " https://rseng.github.io/software/repository/github/DreamCloud-Project/AMALTHEA-SimGrid",
+	"content": "Simulator for cloud applications described using the Amalthea application model on top of SimGrid"
 	},
-	"github/rizkg/BBHash": {
-	"id": "github/rizkg/BBHash",
-	"title": "github/rizkg/BBHash",
-	"url": " https://rseng.github.io/software/repository/github/rizkg/BBHash",
-	"content": "Bloom-filter based minimal perfect hash function library"
+	"github/DreamCloud-Project/McSim-Cycle-accurate-NoC": {
+	"id": "github/DreamCloud-Project/McSim-Cycle-accurate-NoC",
+	"title": "github/DreamCloud-Project/McSim-Cycle-accurate-NoC",
+	"url": " https://rseng.github.io/software/repository/github/DreamCloud-Project/McSim-Cycle-accurate-NoC",
+	"content": "Manycore platform Simulation tool for NoC-based platform at a Cycle-accurate level"
 	},
-	"github/ruta-k/uGMRT-pipeline": {
-	"id": "github/ruta-k/uGMRT-pipeline",
-	"title": "github/ruta-k/uGMRT-pipeline",
-	"url": " https://rseng.github.io/software/repository/github/ruta-k/uGMRT-pipeline",
-	"content": "None"
+	"github/samconnolly/DELightcurveSimulation": {
+	"id": "github/samconnolly/DELightcurveSimulation",
+	"title": "github/samconnolly/DELightcurveSimulation",
+	"url": " https://rseng.github.io/software/repository/github/samconnolly/DELightcurveSimulation",
+	"content": "Emmanoulopoulos style lightcurve simulation"
 	},
-	"github/sjforeman/bskit": {
-	"id": "github/sjforeman/bskit",
-	"title": "github/sjforeman/bskit",
-	"url": " https://rseng.github.io/software/repository/github/sjforeman/bskit",
-	"content": "Code for measuring bispectra from cosmological simulation snapshots"
+	"github/rmaphoh/AutoMorph": {
+	"id": "github/rmaphoh/AutoMorph",
+	"title": "github/rmaphoh/AutoMorph",
+	"url": " https://rseng.github.io/software/repository/github/rmaphoh/AutoMorph",
+	"content": "vessel segmentation, artery and vein, optic disc, vascular feature analysis"
 	},
-	"github/sjforeman/StringFast": {
-	"id": "github/sjforeman/StringFast",
-	"title": "github/sjforeman/StringFast",
-	"url": " https://rseng.github.io/software/repository/github/sjforeman/StringFast",
-	"content": "A fast code to compute CMB power spectra induced by a network of cosmic strings"
+	"github/dstansby/pfsspy": {
+	"id": "github/dstansby/pfsspy",
+	"title": "github/dstansby/pfsspy",
+	"url": " https://rseng.github.io/software/repository/github/dstansby/pfsspy",
+	"content": "Potential Field Source Surface model package for Python"
 	},
-	"github/alixlam/fmristroke": {
-	"id": "github/alixlam/fmristroke",
-	"title": "github/alixlam/fmristroke",
-	"url": " https://rseng.github.io/software/repository/github/alixlam/fmristroke",
-	"content": "Adding quality checks and confounds computation steps to fmriprep for stroke data."
+	"github/yatiml/yatiml": {
+	"id": "github/yatiml/yatiml",
+	"title": "github/yatiml/yatiml",
+	"url": " https://rseng.github.io/software/repository/github/yatiml/yatiml",
+	"content": "Python library for YAML type inference, schema checking and syntactic sugar"
 	},
-	"github/ChrisBeaumont/brut": {
-	"id": "github/ChrisBeaumont/brut",
-	"title": "github/ChrisBeaumont/brut",
-	"url": " https://rseng.github.io/software/repository/github/ChrisBeaumont/brut",
-	"content": "Machine Learning on the Milky Way Project DR1"
+	"github/geospace-code/h5fortran": {
+	"id": "github/geospace-code/h5fortran",
+	"title": "github/geospace-code/h5fortran",
+	"url": " https://rseng.github.io/software/repository/github/geospace-code/h5fortran",
+	"content": "Lightweight HDF5 polymorphic Fortran: h5write() h5read()"
 	},
-	"github/agree019/DarkCapPy": {
-	"id": "github/agree019/DarkCapPy",
-	"title": "github/agree019/DarkCapPy",
-	"url": " https://rseng.github.io/software/repository/github/agree019/DarkCapPy",
-	"content": "None"
+	"github/dgbowl/yadg": {
+	"id": "github/dgbowl/yadg",
+	"title": "github/dgbowl/yadg",
+	"url": " https://rseng.github.io/software/repository/github/dgbowl/yadg",
+	"content": "yadg: yet another datagram"
 	},
-	"github/vincentvaneylen/k2photometry": {
-	"id": "github/vincentvaneylen/k2photometry",
-	"title": "github/vincentvaneylen/k2photometry",
-	"url": " https://rseng.github.io/software/repository/github/vincentvaneylen/k2photometry",
-	"content": "Read, reduce and detrend K2 photometry and search for transiting planets"
+	"github/migp11/pyfastcore": {
+	"id": "github/migp11/pyfastcore",
+	"title": "github/migp11/pyfastcore",
+	"url": " https://rseng.github.io/software/repository/github/migp11/pyfastcore",
+	"content": "A python implementation of the context-specific model extraction method FastCore by Vlassis et al. (2014)."
 	},
-	"github/mikhailklassen/protostellar_evolution": {
-	"id": "github/mikhailklassen/protostellar_evolution",
-	"title": "github/mikhailklassen/protostellar_evolution",
-	"url": " https://rseng.github.io/software/repository/github/mikhailklassen/protostellar_evolution",
-	"content": "Evolves the radius and luminosity of a protostar from formation to a main sequence star"
+	"github/afarahi/kllr": {
+	"id": "github/afarahi/kllr",
+	"title": "github/afarahi/kllr",
+	"url": " https://rseng.github.io/software/repository/github/afarahi/kllr",
+	"content": "Kernel Localized Linear Regression (KLLR)"
 	},
-	"github/Pizzuti92/MG-MAMPOSSt": {
-	"id": "github/Pizzuti92/MG-MAMPOSSt",
-	"title": "github/Pizzuti92/MG-MAMPOSSt",
-	"url": " https://rseng.github.io/software/repository/github/Pizzuti92/MG-MAMPOSSt",
-	"content": "MG-MAMPOSSt is a FORTRAN code that extended the MAMPOSSt algorithm of G. Mamon, A. Biviano and G. Boué, that performs Bayesian fits of models of mass and velocity anisotropy profiles to the distribution of tracers in projected phase space, to handle modified gravity models and constrain its parameters. The new version implements two distinct types of gravity modifications, namely general chameleon (including $f(\mathcal{R})$ models) and beyond Horndeski gravity (Vainshtein screening)."
+	"github/afarahi/PoPE": {
+	"id": "github/afarahi/PoPE",
+	"title": "github/afarahi/PoPE",
+	"url": " https://rseng.github.io/software/repository/github/afarahi/PoPE",
+	"content": "Population Profile Estimator"
 	},
-	"github/eltevo/steps": {
-	"id": "github/eltevo/steps",
-	"title": "github/eltevo/steps",
-	"url": " https://rseng.github.io/software/repository/github/eltevo/steps",
-	"content": "Stereographically Projected Cosmological Simulations"
+	"github/afarahi/tatter": {
+	"id": "github/afarahi/tatter",
+	"title": "github/afarahi/tatter",
+	"url": " https://rseng.github.io/software/repository/github/afarahi/tatter",
+	"content": "TATTER (Two-sAmple TesT EstimatoR) is a tool to perform two-sample hypothesis test."
 	},
-	"github/samb8s/PsrPopPy": {
-	"id": "github/samb8s/PsrPopPy",
-	"title": "github/samb8s/PsrPopPy",
-	"url": " https://rseng.github.io/software/repository/github/samb8s/PsrPopPy",
-	"content": "Python implementation of PSRPOP, designed to be run from the command line or from Python scripts/interpreter"
+	"github/martibosch/detectree": {
+	"id": "github/martibosch/detectree",
+	"title": "github/martibosch/detectree",
+	"url": " https://rseng.github.io/software/repository/github/martibosch/detectree",
+	"content": "Tree detection from aerial imagery in Python"
 	},
-	"github/NCIP/visda": {
-	"id": "github/NCIP/visda",
-	"title": "github/NCIP/visda",
-	"url": " https://rseng.github.io/software/repository/github/NCIP/visda",
-	"content": "VISDA (VIsual Statistical Data Analyzer) is analytical tool for cluster modeling and visualization of microarray data."
+	"github/ImproPhoto/pymicmac": {
+	"id": "github/ImproPhoto/pymicmac",
+	"title": "github/ImproPhoto/pymicmac",
+	"url": " https://rseng.github.io/software/repository/github/ImproPhoto/pymicmac",
+	"content": "Python tools for the MicMac FOSS photogrammetric &#34;suite&#34;"
 	},
-	"github/danhey/maelstrom": {
-	"id": "github/danhey/maelstrom",
-	"title": "github/danhey/maelstrom",
-	"url": " https://rseng.github.io/software/repository/github/danhey/maelstrom",
-	"content": "Forward modelling of pulsating stars in binaries"
+	"github/flexible-atomic-code/fac": {
+	"id": "github/flexible-atomic-code/fac",
+	"title": "github/flexible-atomic-code/fac",
+	"url": " https://rseng.github.io/software/repository/github/flexible-atomic-code/fac",
+	"content": "FAC - Flexible Atomic Code by Ming Feng Gu"
 	},
-	"github/danhey/echelle": {
-	"id": "github/danhey/echelle",
-	"title": "github/danhey/echelle",
-	"url": " https://rseng.github.io/software/repository/github/danhey/echelle",
-	"content": "Dynamic echelle diagrams for asteroseismology"
+	"github/mtsch/Ripserer.jl": {
+	"id": "github/mtsch/Ripserer.jl",
+	"title": "github/mtsch/Ripserer.jl",
+	"url": " https://rseng.github.io/software/repository/github/mtsch/Ripserer.jl",
+	"content": "Ripser and Ripserer"
 	},
-	"github/Yu-Group/simChef": {
-	"id": "github/Yu-Group/simChef",
-	"title": "github/Yu-Group/simChef",
-	"url": " https://rseng.github.io/software/repository/github/Yu-Group/simChef",
-	"content": "An R package to facilitate PCS simulation studies."
+	"github/vbakis/mrs": {
+	"id": "github/vbakis/mrs",
+	"title": "github/vbakis/mrs",
+	"url": " https://rseng.github.io/software/repository/github/vbakis/mrs",
+	"content": "This repository is created for the MOS Reduction Software."
 	},
-	"github/Yu-Group/veridical-flow": {
-	"id": "github/Yu-Group/veridical-flow",
-	"title": "github/Yu-Group/veridical-flow",
-	"url": " https://rseng.github.io/software/repository/github/Yu-Group/veridical-flow",
-	"content": "Making it easier to build stable, trustworthy data-science pipelines."
+	"github/smith-chem-wisc/MetaMorpheus": {
+	"id": "github/smith-chem-wisc/MetaMorpheus",
+	"title": "github/smith-chem-wisc/MetaMorpheus",
+	"url": " https://rseng.github.io/software/repository/github/smith-chem-wisc/MetaMorpheus",
+	"content": "Proteomics search software with integrated calibration, PTM discovery, bottom-up, top-down and LFQ capabilities"
 	},
-	"github/jpcoles/glass": {
-	"id": "github/jpcoles/glass",
-	"title": "github/jpcoles/glass",
-	"url": " https://rseng.github.io/software/repository/github/jpcoles/glass",
-	"content": "A parallel, free-form gravitational lens modeling tool and framework"
+	"github/smith-chem-wisc/ProteaseGuru": {
+	"id": "github/smith-chem-wisc/ProteaseGuru",
+	"title": "github/smith-chem-wisc/ProteaseGuru",
+	"url": " https://rseng.github.io/software/repository/github/smith-chem-wisc/ProteaseGuru",
+	"content": "None"
 	},
-	"github/jpcoles/mosaic": {
-	"id": "github/jpcoles/mosaic",
-	"title": "github/jpcoles/mosaic",
-	"url": " https://rseng.github.io/software/repository/github/jpcoles/mosaic",
-	"content": "Multipole Operators in Symbols, Automatically Improved and Condensed"
+	"github/actris-cloudnet/mwrpy": {
+	"id": "github/actris-cloudnet/mwrpy",
+	"title": "github/actris-cloudnet/mwrpy",
+	"url": " https://rseng.github.io/software/repository/github/actris-cloudnet/mwrpy",
+	"content": "Python package for Microwave Radiometer processing in ACTRIS "
 	},
-	"github/andizq/sf3dmodels": {
-	"id": "github/andizq/sf3dmodels",
-	"title": "github/andizq/sf3dmodels",
-	"url": " https://rseng.github.io/software/repository/github/andizq/sf3dmodels",
-	"content": "sf3dmodels: star-forming regions 3D modelling package in Python :partly_sunny:"
+	"github/actris-cloudnet/cloudnetpy": {
+	"id": "github/actris-cloudnet/cloudnetpy",
+	"title": "github/actris-cloudnet/cloudnetpy",
+	"url": " https://rseng.github.io/software/repository/github/actris-cloudnet/cloudnetpy",
+	"content": "Python package for Cloudnet data processing "
 	},
-	"github/utrillalab/repromin": {
-	"id": "github/utrillalab/repromin",
-	"title": "github/utrillalab/repromin",
-	"url": " https://rseng.github.io/software/repository/github/utrillalab/repromin",
-	"content": "None"
+	"github/Dylan-Aliberti/Kepler-Collisions": {
+	"id": "github/Dylan-Aliberti/Kepler-Collisions",
+	"title": "github/Dylan-Aliberti/Kepler-Collisions",
+	"url": " https://rseng.github.io/software/repository/github/Dylan-Aliberti/Kepler-Collisions",
+	"content": "Code used for testing the the analytic propagator."
 	},
-	"github/gorpipe/gor": {
-	"id": "github/gorpipe/gor",
-	"title": "github/gorpipe/gor",
-	"url": " https://rseng.github.io/software/repository/github/gorpipe/gor",
-	"content": "GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine."
+	"github/Brauckhoff/biopixR": {
+	"id": "github/Brauckhoff/biopixR",
+	"title": "github/Brauckhoff/biopixR",
+	"url": " https://rseng.github.io/software/repository/github/Brauckhoff/biopixR",
+	"content": "R Package for bioimage analysis"
 	},
-	"github/IanHeywood/oxkat": {
-	"id": "github/IanHeywood/oxkat",
-	"title": "github/IanHeywood/oxkat",
-	"url": " https://rseng.github.io/software/repository/github/IanHeywood/oxkat",
-	"content": "MeerKAT calibration and imaging scripts"
+	"github/ExoCTK/exoctk": {
+	"id": "github/ExoCTK/exoctk",
+	"title": "github/ExoCTK/exoctk",
+	"url": " https://rseng.github.io/software/repository/github/ExoCTK/exoctk",
+	"content": "The Exoplanet Characterization Tool Kit"
 	},
-	"github/IanHeywood/pony3d": {
-	"id": "github/IanHeywood/pony3d",
-	"title": "github/IanHeywood/pony3d",
-	"url": " https://rseng.github.io/software/repository/github/IanHeywood/pony3d",
+	"github/jkimlab/msPIPE": {
+	"id": "github/jkimlab/msPIPE",
+	"title": "github/jkimlab/msPIPE",
+	"url": " https://rseng.github.io/software/repository/github/jkimlab/msPIPE",
 	"content": "None"
 	},
-	"github/intelligent-soft-robots/o80": {
-	"id": "github/intelligent-soft-robots/o80",
-	"title": "github/intelligent-soft-robots/o80",
-	"url": " https://rseng.github.io/software/repository/github/intelligent-soft-robots/o80",
-	"content": "synchronization of c++ processes via a custom python API"
+	"github/MannLabs/alphapept": {
+	"id": "github/MannLabs/alphapept",
+	"title": "github/MannLabs/alphapept",
+	"url": " https://rseng.github.io/software/repository/github/MannLabs/alphapept",
+	"content": "A modular, python-based framework for mass spectrometry. Powered by nbdev."
 	},
-	"github/david-barnett/microViz": {
-	"id": "github/david-barnett/microViz",
-	"title": "github/david-barnett/microViz",
-	"url": " https://rseng.github.io/software/repository/github/david-barnett/microViz",
-	"content": "R package for microbiome data visualization. Uses phyloseq, vegan and tidyverse. See website link for docs with visual examples. Docker image available."
+	"github/chapmanb/bcbio.prioritize": {
+	"id": "github/chapmanb/bcbio.prioritize",
+	"title": "github/chapmanb/bcbio.prioritize",
+	"url": " https://rseng.github.io/software/repository/github/chapmanb/bcbio.prioritize",
+	"content": "Prioritize small variants, structural variants and coverage based on biological inputs"
 	},
-	"github/bbbbbbzhou/MDPET": {
-	"id": "github/bbbbbbzhou/MDPET",
-	"title": "github/bbbbbbzhou/MDPET",
-	"url": " https://rseng.github.io/software/repository/github/bbbbbbzhou/MDPET",
-	"content": "MDPET: A Unified Motion Correction and Denoising Adversarial Network for Low-dose Gated PET (IEEE Transactions on Medical Imaging, 2021)"
+	"github/chapmanb/bcbio.variation": {
+	"id": "github/chapmanb/bcbio.variation",
+	"title": "github/chapmanb/bcbio.variation",
+	"url": " https://rseng.github.io/software/repository/github/chapmanb/bcbio.variation",
+	"content": "Toolkit to analyze genomic variation data, built on the GATK with Clojure"
 	},
-	"github/konkolyseismolab/seismolab": {
-	"id": "github/konkolyseismolab/seismolab",
-	"title": "github/konkolyseismolab/seismolab",
-	"url": " https://rseng.github.io/software/repository/github/konkolyseismolab/seismolab",
-	"content": "Open-source python framework for downloading, analyzing, and visualizing data of variable stars from space-based surveys."
+	"github/chapmanb/bcbb": {
+	"id": "github/chapmanb/bcbb",
+	"title": "github/chapmanb/bcbb",
+	"url": " https://rseng.github.io/software/repository/github/chapmanb/bcbb",
+	"content": "Incubator for useful bioinformatics code, primarily in Python and R"
 	},
-	"github/RuiningZHAO/wcpy": {
-	"id": "github/RuiningZHAO/wcpy",
-	"title": "github/RuiningZHAO/wcpy",
-	"url": " https://rseng.github.io/software/repository/github/RuiningZHAO/wcpy",
-	"content": "A UI for wavelength calibration."
+	"github/elkebir-group/Jumper": {
+	"id": "github/elkebir-group/Jumper",
+	"title": "github/elkebir-group/Jumper",
+	"url": " https://rseng.github.io/software/repository/github/elkebir-group/Jumper",
+	"content": "Discontinuous Transcript Assembly in Nidovirales"
 	},
-	"github/inonchiu/ComEst": {
-	"id": "github/inonchiu/ComEst",
-	"title": "github/inonchiu/ComEst",
-	"url": " https://rseng.github.io/software/repository/github/inonchiu/ComEst",
-	"content": "ComEst - a completeness estimator"
+	"github/elkebir-group/derna": {
+	"id": "github/elkebir-group/derna",
+	"title": "github/elkebir-group/derna",
+	"url": " https://rseng.github.io/software/repository/github/elkebir-group/derna",
+	"content": "RNA sequence design for a target protein sequence"
 	},
-	"github/siavash-saki/tesspy": {
-	"id": "github/siavash-saki/tesspy",
-	"title": "github/siavash-saki/tesspy",
-	"url": " https://rseng.github.io/software/repository/github/siavash-saki/tesspy",
-	"content": "None"
+	"github/Wimmics/olivaw": {
+	"id": "github/Wimmics/olivaw",
+	"title": "github/Wimmics/olivaw",
+	"url": " https://rseng.github.io/software/repository/github/Wimmics/olivaw",
+	"content": "Python framework for Agile ontology development support to be used with command lines with pre-commit or GitHub Actions"
 	},
-	"github/MrMinimal64/multivar_horner": {
-	"id": "github/MrMinimal64/multivar_horner",
-	"title": "github/MrMinimal64/multivar_horner",
-	"url": " https://rseng.github.io/software/repository/github/MrMinimal64/multivar_horner",
-	"content": "python package implementing a multivariate Horner scheme for efficiently evaluating multivariate polynomials "
+	"github/McPHAC/McPHAC": {
+	"id": "github/McPHAC/McPHAC",
+	"title": "github/McPHAC/McPHAC",
+	"url": " https://rseng.github.io/software/repository/github/McPHAC/McPHAC",
+	"content": "The McGill Planar Hydrogen Atmosphere Code"
 	},
-	"github/vmmunoza/nuHawkHunter": {
-	"id": "github/vmmunoza/nuHawkHunter",
-	"title": "github/vmmunoza/nuHawkHunter",
-	"url": " https://rseng.github.io/software/repository/github/vmmunoza/nuHawkHunter",
-	"content": "Repository with forecast of PBH neutrinos"
+	"github/BioComputingUP/ring-pymol": {
+	"id": "github/BioComputingUP/ring-pymol",
+	"title": "github/BioComputingUP/ring-pymol",
+	"url": " https://rseng.github.io/software/repository/github/BioComputingUP/ring-pymol",
+	"content": "This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua"
 	},
-	"github/biboyd/SALSA": {
-	"id": "github/biboyd/SALSA",
-	"title": "github/biboyd/SALSA",
-	"url": " https://rseng.github.io/software/repository/github/biboyd/SALSA",
-	"content": "Salsa is a Python package for constructing synthetic absorber catalogs from astrophysical hydrodynamic simulations"
+	"github/ArtRand/signalAlign": {
+	"id": "github/ArtRand/signalAlign",
+	"title": "github/ArtRand/signalAlign",
+	"url": " https://rseng.github.io/software/repository/github/ArtRand/signalAlign",
+	"content": "HMM-HDP models for MinION signal alignments"
 	},
-	"github/astronomyk/SimCADO": {
-	"id": "github/astronomyk/SimCADO",
-	"title": "github/astronomyk/SimCADO",
-	"url": " https://rseng.github.io/software/repository/github/astronomyk/SimCADO",
-	"content": "None"
+	"github/Mat-dp/mat-dp-core": {
+	"id": "github/Mat-dp/mat-dp-core",
+	"title": "github/Mat-dp/mat-dp-core",
+	"url": " https://rseng.github.io/software/repository/github/Mat-dp/mat-dp-core",
+	"content": "Mat-dp core cotains the key methods used in the broader Mat-dp model. Mat-dp aims to deliver user-friendly and open-access software to study the environmental implications of materials used for building low-carbon systems."
 	},
-	"github/telegraphic/fits2hdf": {
-	"id": "github/telegraphic/fits2hdf",
-	"title": "github/telegraphic/fits2hdf",
-	"url": " https://rseng.github.io/software/repository/github/telegraphic/fits2hdf",
-	"content": "FITS to HDFITS conversion utility"
+	"github/wen-jams/bsavi": {
+	"id": "github/wen-jams/bsavi",
+	"title": "github/wen-jams/bsavi",
+	"url": " https://rseng.github.io/software/repository/github/wen-jams/bsavi",
+	"content": "Interactive visualizer for high-dimensional datasets and observables."
 	},
-	"github/telegraphic/pygsm": {
-	"id": "github/telegraphic/pygsm",
-	"title": "github/telegraphic/pygsm",
-	"url": " https://rseng.github.io/software/repository/github/telegraphic/pygsm",
-	"content": "Python implementation of the Global Sky Model (GSM) for the radio sky between 10 MHz - 5 THz"
+	"github/BigDataBiology/argNorm": {
+	"id": "github/BigDataBiology/argNorm",
+	"title": "github/BigDataBiology/argNorm",
+	"url": " https://rseng.github.io/software/repository/github/BigDataBiology/argNorm",
+	"content": "ARG normalization by mapping to the ARO ontology."
 	},
-	"github/flexible-atomic-code/fac": {
-	"id": "github/flexible-atomic-code/fac",
-	"title": "github/flexible-atomic-code/fac",
-	"url": " https://rseng.github.io/software/repository/github/flexible-atomic-code/fac",
-	"content": "FAC - Flexible Atomic Code by Ming Feng Gu"
+	"github/seung-lab/FlyWirePaper": {
+	"id": "github/seung-lab/FlyWirePaper",
+	"title": "github/seung-lab/FlyWirePaper",
+	"url": " https://rseng.github.io/software/repository/github/seung-lab/FlyWirePaper",
+	"content": "Source code and data to reproduce analyses from the FlyWire paper."
 	},
-	"github/molgenis/vibe-suppl": {
-	"id": "github/molgenis/vibe-suppl",
-	"title": "github/molgenis/vibe-suppl",
-	"url": " https://rseng.github.io/software/repository/github/molgenis/vibe-suppl",
-	"content": "Variant Interpretation using Biological Evidence - supplemental files"
+	"github/rambaut/jebl2": {
+	"id": "github/rambaut/jebl2",
+	"title": "github/rambaut/jebl2",
+	"url": " https://rseng.github.io/software/repository/github/rambaut/jebl2",
+	"content": "Automatically exported from code.google.com/p/jebl2"
 	},
-	"github/molgenis/graph2vr": {
-	"id": "github/molgenis/graph2vr",
-	"title": "github/molgenis/graph2vr",
-	"url": " https://rseng.github.io/software/repository/github/molgenis/graph2vr",
-	"content": "Visualising / Exploring Linked Data (SPARQL Construct queries) in Virtual Reality."
+	"github/baoxingsong/AnchorWave": {
+	"id": "github/baoxingsong/AnchorWave",
+	"title": "github/baoxingsong/AnchorWave",
+	"url": " https://rseng.github.io/software/repository/github/baoxingsong/AnchorWave",
+	"content": "Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation"
 	},
-	"github/metagenopolis/CroCoDeEL": {
-	"id": "github/metagenopolis/CroCoDeEL",
-	"title": "github/metagenopolis/CroCoDeEL",
-	"url": " https://rseng.github.io/software/repository/github/metagenopolis/CroCoDeEL",
-	"content": "CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data"
+	"github/LabLaskin/MSIGen": {
+	"id": "github/LabLaskin/MSIGen",
+	"title": "github/LabLaskin/MSIGen",
+	"url": " https://rseng.github.io/software/repository/github/LabLaskin/MSIGen",
+	"content": "Python package for visualizing MS images from line scans"
 	},
-	"github/hknd23/idcempy": {
-	"id": "github/hknd23/idcempy",
-	"title": "github/hknd23/idcempy",
-	"url": " https://rseng.github.io/software/repository/github/hknd23/idcempy",
-	"content": "Inflated Discrete Choice Models"
+	"github/MJCliffe/PASCal": {
+	"id": "github/MJCliffe/PASCal",
+	"title": "github/MJCliffe/PASCal",
+	"url": " https://rseng.github.io/software/repository/github/MJCliffe/PASCal",
+	"content": "Codebase for PASCal strain calculator"
 	},
-	"github/gabraham/flashpca": {
-	"id": "github/gabraham/flashpca",
-	"title": "github/gabraham/flashpca",
-	"url": " https://rseng.github.io/software/repository/github/gabraham/flashpca",
-	"content": "Fast Principal Component Analysis of Large-Scale Genome-Wide Data"
+	"github/tberlok/paicos": {
+	"id": "github/tberlok/paicos",
+	"title": "github/tberlok/paicos",
+	"url": " https://rseng.github.io/software/repository/github/tberlok/paicos",
+	"content": "An object-oriented Python package for analysis of (cosmological) simulations performed with Arepo"
 	},
-	"github/alawryaguila/multi-view-AE": {
-	"id": "github/alawryaguila/multi-view-AE",
-	"title": "github/alawryaguila/multi-view-AE",
-	"url": " https://rseng.github.io/software/repository/github/alawryaguila/multi-view-AE",
+	"github/apertif/apercal": {
+	"id": "github/apertif/apercal",
+	"title": "github/apertif/apercal",
+	"url": " https://rseng.github.io/software/repository/github/apertif/apercal",
 	"content": "None"
 	},
-	"github/cnes/EleFits": {
-	"id": "github/cnes/EleFits",
-	"title": "github/cnes/EleFits",
-	"url": " https://rseng.github.io/software/repository/github/cnes/EleFits",
-	"content": "A modern C++ API on top of CFitsIO"
+	"github/parklab/LiRA": {
+	"id": "github/parklab/LiRA",
+	"title": "github/parklab/LiRA",
+	"url": " https://rseng.github.io/software/repository/github/parklab/LiRA",
+	"content": "(Linked Read Analysis) a computational tool for removing amplification artifacts from single-cell DNA sequencing data and estimating mutation rates in single cells."
+	},
+	"github/parklab/SCAN2": {
+	"id": "github/parklab/SCAN2",
+	"title": "github/parklab/SCAN2",
+	"url": " https://rseng.github.io/software/repository/github/parklab/SCAN2",
+	"content": "SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)"
+	},
+	"github/m-d-grunnill/MetaCast": {
+	"id": "github/m-d-grunnill/MetaCast",
+	"title": "github/m-d-grunnill/MetaCast",
+	"url": " https://rseng.github.io/software/repository/github/m-d-grunnill/MetaCast",
+	"content": "A package for broadcasting epidimiological and ecological models over metapopulations."
 	},
-	"github/blackjax-devs/blackjax": {
-	"id": "github/blackjax-devs/blackjax",
-	"title": "github/blackjax-devs/blackjax",
-	"url": " https://rseng.github.io/software/repository/github/blackjax-devs/blackjax",
-	"content": "BlackJAX is a sampling library designed for ease of use, speed and modularity."
+	"github/vpc-ccg/calib": {
+	"id": "github/vpc-ccg/calib",
+	"title": "github/vpc-ccg/calib",
+	"url": " https://rseng.github.io/software/repository/github/vpc-ccg/calib",
+	"content": "clusters paired-end reads using their barcodes and sequences."
 	},
-	"github/metawards/MetaWards": {
-	"id": "github/metawards/MetaWards",
-	"title": "github/metawards/MetaWards",
-	"url": " https://rseng.github.io/software/repository/github/metawards/MetaWards",
-	"content": "MetaWards disease metapopulation analysis and modelling software. Professional geographical SIR model with a flexible plugin architecture to support complex scenario modelling"
+	"github/vpc-ccg/svict": {
+	"id": "github/vpc-ccg/svict",
+	"title": "github/vpc-ccg/svict",
+	"url": " https://rseng.github.io/software/repository/github/vpc-ccg/svict",
+	"content": "Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA"
 	},
-	"github/KVSlab/turtleFSI": {
-	"id": "github/KVSlab/turtleFSI",
-	"title": "github/KVSlab/turtleFSI",
-	"url": " https://rseng.github.io/software/repository/github/KVSlab/turtleFSI",
-	"content": "Monolithic Fluid-Structure Interaction (FSI) solver"
+	"github/vpc-ccg/genion": {
+	"id": "github/vpc-ccg/genion",
+	"title": "github/vpc-ccg/genion",
+	"url": " https://rseng.github.io/software/repository/github/vpc-ccg/genion",
+	"content": "GENe fusION"
 	},
-	"github/KVSlab/VaMPy": {
-	"id": "github/KVSlab/VaMPy",
-	"title": "github/KVSlab/VaMPy",
-	"url": " https://rseng.github.io/software/repository/github/KVSlab/VaMPy",
-	"content": "A collection of tools for pre-processing, simulating, and post-processing vascular morphologies."
+	"github/pandegroup/openmm": {
+	"id": "github/pandegroup/openmm",
+	"title": "github/pandegroup/openmm",
+	"url": " https://rseng.github.io/software/repository/github/pandegroup/openmm",
+	"content": "OpenMM is a toolkit for molecular simulation using high performance GPU code. "
 	},
-	"github/wchenastro/Mosaic": {
-	"id": "github/wchenastro/Mosaic",
-	"title": "github/wchenastro/Mosaic",
-	"url": " https://rseng.github.io/software/repository/github/wchenastro/Mosaic",
-	"content": "None"
+	"github/BDI-pathogens/OpenABM-Covid19-model-paper": {
+	"id": "github/BDI-pathogens/OpenABM-Covid19-model-paper",
+	"title": "github/BDI-pathogens/OpenABM-Covid19-model-paper",
+	"url": " https://rseng.github.io/software/repository/github/BDI-pathogens/OpenABM-Covid19-model-paper",
+	"content": "Figures for the paper describing the OpenABM-Covid19 model"
 	},
-	"github/savage13/sacio": {
-	"id": "github/savage13/sacio",
-	"title": "github/savage13/sacio",
-	"url": " https://rseng.github.io/software/repository/github/savage13/sacio",
-	"content": "sacio library"
+	"github/mtazzari/galario": {
+	"id": "github/mtazzari/galario",
+	"title": "github/mtazzari/galario",
+	"url": " https://rseng.github.io/software/repository/github/mtazzari/galario",
+	"content": "Gpu Accelerated Library for Analysing Radio Interferometer Observations"
 	},
-	"github/ryanhausen/fitsmap": {
-	"id": "github/ryanhausen/fitsmap",
-	"title": "github/ryanhausen/fitsmap",
-	"url": " https://rseng.github.io/software/repository/github/ryanhausen/fitsmap",
-	"content": "FitsMap: A Simple, Lightweight Tool For Displaying Interactive Astronomical Image and Catalog Data"
+	"github/mtazzari/uvplot": {
+	"id": "github/mtazzari/uvplot",
+	"title": "github/mtazzari/uvplot",
+	"url": " https://rseng.github.io/software/repository/github/mtazzari/uvplot",
+	"content": "A simple package to make nice visibility plots and to export visibilites from MS tables"
 	},
-	"github/TianlaiProject/tlpipe": {
-	"id": "github/TianlaiProject/tlpipe",
-	"title": "github/TianlaiProject/tlpipe",
-	"url": " https://rseng.github.io/software/repository/github/TianlaiProject/tlpipe",
-	"content": "The Tianlai pipeline."
+	"github/mtazzari/binary": {
+	"id": "github/mtazzari/binary",
+	"title": "github/mtazzari/binary",
+	"url": " https://rseng.github.io/software/repository/github/mtazzari/binary",
+	"content": "This program computes the evolution of an accretion disc interacting with a binary system. Used in Tazzari, Lodato (2015)."
 	},
-	"github/ByrumLab/proteoDA": {
-	"id": "github/ByrumLab/proteoDA",
-	"title": "github/ByrumLab/proteoDA",
-	"url": " https://rseng.github.io/software/repository/github/ByrumLab/proteoDA",
+	"github/mariogrs/Simfast21": {
+	"id": "github/mariogrs/Simfast21",
+	"title": "github/mariogrs/Simfast21",
+	"url": " https://rseng.github.io/software/repository/github/mariogrs/Simfast21",
+	"content": "21cm code"
+	},
+	"github/kernsuite-debian/parseltongue": {
+	"id": "github/kernsuite-debian/parseltongue",
+	"title": "github/kernsuite-debian/parseltongue",
+	"url": " https://rseng.github.io/software/repository/github/kernsuite-debian/parseltongue",
 	"content": "None"
 	},
-	"github/B-UMMI/chewBBACA": {
-	"id": "github/B-UMMI/chewBBACA",
-	"title": "github/B-UMMI/chewBBACA",
-	"url": " https://rseng.github.io/software/repository/github/B-UMMI/chewBBACA",
-	"content": "A complete suite for gene-by-gene schema creation and strain identification."
+	"github/spectrapepper/spectrapepper": {
+	"id": "github/spectrapepper/spectrapepper",
+	"title": "github/spectrapepper/spectrapepper",
+	"url": " https://rseng.github.io/software/repository/github/spectrapepper/spectrapepper",
+	"content": "A Python package for advanced processing and combinatorial analysis of spectroscopy data."
 	},
-	"github/mikaelLEROY/AxionNS_RayTracing": {
-	"id": "github/mikaelLEROY/AxionNS_RayTracing",
-	"title": "github/mikaelLEROY/AxionNS_RayTracing",
-	"url": " https://rseng.github.io/software/repository/github/mikaelLEROY/AxionNS_RayTracing",
-	"content": "None"
+	"github/jpober/21cmSense": {
+	"id": "github/jpober/21cmSense",
+	"title": "github/jpober/21cmSense",
+	"url": " https://rseng.github.io/software/repository/github/jpober/21cmSense",
+	"content": "Code for calculating the sensitivity of 21cm experiments to the EoR power spectrum"
 	},
-	"github/DICP1810/SpotLink": {
-	"id": "github/DICP1810/SpotLink",
-	"title": "github/DICP1810/SpotLink",
-	"url": " https://rseng.github.io/software/repository/github/DICP1810/SpotLink",
-	"content": "SpotLinkTest"
+	"github/geza-kovacs/tran_k2": {
+	"id": "github/geza-kovacs/tran_k2",
+	"title": "github/geza-kovacs/tran_k2",
+	"url": " https://rseng.github.io/software/repository/github/geza-kovacs/tran_k2",
+	"content": "Planetary transit search in the presence of stellar variability and instrumental systematics"
 	},
-	"github/DICP1810/ComMap": {
-	"id": "github/DICP1810/ComMap",
-	"title": "github/DICP1810/ComMap",
-	"url": " https://rseng.github.io/software/repository/github/DICP1810/ComMap",
-	"content": "CXMS generated cross-linking pairs mapping to structures"
+	"github/czbiohub/cerebra": {
+	"id": "github/czbiohub/cerebra",
+	"title": "github/czbiohub/cerebra",
+	"url": " https://rseng.github.io/software/repository/github/czbiohub/cerebra",
+	"content": "A tool for fast and accurate summarizing of variant calling format (VCF) files"
 	},
-	"github/nilearn/nilearnhub.io": {
-	"id": "github/nilearn/nilearnhub.io",
-	"title": "github/nilearn/nilearnhub.io",
-	"url": " https://rseng.github.io/software/repository/github/nilearn/nilearnhub.io",
-	"content": "a Python module for fast and easy statistical learning on NeuroImaging data.

It leverages the scikit-learn Python toolbox for multivariate statistics with applications such as predictive modelling, classification, decoding, or connectivity analysis."
+	"github/ulebreui/shark": {
+	"id": "github/ulebreui/shark",
+	"title": "github/ulebreui/shark",
+	"url": " https://rseng.github.io/software/repository/github/ulebreui/shark",
+	"content": "This is the public repository of the shark code (Lebreuilly et al., 2023)"
 	},
-	"github/anuwu/DAGN-Blindtest": {
-	"id": "github/anuwu/DAGN-Blindtest",
-	"title": "github/anuwu/DAGN-Blindtest",
-	"url": " https://rseng.github.io/software/repository/github/anuwu/DAGN-Blindtest",
-	"content": "Double Nuclei Galaxy Finder from SDSS. Check https://arxiv.org/abs/2011.12177"
+	"github/JamesPaynter/PyGRB": {
+	"id": "github/JamesPaynter/PyGRB",
+	"title": "github/JamesPaynter/PyGRB",
+	"url": " https://rseng.github.io/software/repository/github/JamesPaynter/PyGRB",
+	"content": "Gamma-ray burst analysis library"
 	},
-	"github/anuwu/GOTHIC": {
-	"id": "github/anuwu/GOTHIC",
-	"title": "github/anuwu/GOTHIC",
-	"url": " https://rseng.github.io/software/repository/github/anuwu/GOTHIC",
-	"content": "Double Nuclei Galaxy Finder from SDSS. Check https://arxiv.org/abs/2011.12177"
+	"github/jasonyangshadow/lpmx": {
+	"id": "github/jasonyangshadow/lpmx",
+	"title": "github/jasonyangshadow/lpmx",
+	"url": " https://rseng.github.io/software/repository/github/jasonyangshadow/lpmx",
+	"content": "A novel composable rootless container system"
 	},
-	"github/IMMM-SFA/tell": {
-	"id": "github/IMMM-SFA/tell",
-	"title": "github/IMMM-SFA/tell",
-	"url": " https://rseng.github.io/software/repository/github/IMMM-SFA/tell",
-	"content": "A model to predict Total ELectricity Loads (TELL)"
+	"github/samirmartins/pydaq": {
+	"id": "github/samirmartins/pydaq",
+	"title": "github/samirmartins/pydaq",
+	"url": " https://rseng.github.io/software/repository/github/samirmartins/pydaq",
+	"content": "Data Acquisition and Experimental Analysis with Python and Graphical User Interface"
 	},
-	"github/IMMM-SFA/naturf": {
-	"id": "github/IMMM-SFA/naturf",
-	"title": "github/IMMM-SFA/naturf",
-	"url": " https://rseng.github.io/software/repository/github/IMMM-SFA/naturf",
-	"content": "NATURF: Neighborhood Adaptive Tissues for Urban Resilience Futures"
+	"github/MilesCranmer/PySR": {
+	"id": "github/MilesCranmer/PySR",
+	"title": "github/MilesCranmer/PySR",
+	"url": " https://rseng.github.io/software/repository/github/MilesCranmer/PySR",
+	"content": "High-Performance Symbolic Regression in Python and Julia"
 	},
-	"github/IMMM-SFA/mosartwmpy": {
-	"id": "github/IMMM-SFA/mosartwmpy",
-	"title": "github/IMMM-SFA/mosartwmpy",
-	"url": " https://rseng.github.io/software/repository/github/IMMM-SFA/mosartwmpy",
-	"content": "Python translation of MOSART-WM: a water routing and management model"
+	"github/Incpink-Liu/DNA-storage-R_plus": {
+	"id": "github/Incpink-Liu/DNA-storage-R_plus",
+	"title": "github/Incpink-Liu/DNA-storage-R_plus",
+	"url": " https://rseng.github.io/software/repository/github/Incpink-Liu/DNA-storage-R_plus",
+	"content": "None"
 	},
-	"github/IMMM-SFA/statemodify": {
-	"id": "github/IMMM-SFA/statemodify",
-	"title": "github/IMMM-SFA/statemodify",
-	"url": " https://rseng.github.io/software/repository/github/IMMM-SFA/statemodify",
-	"content": "A package to modify StateMod&#39;s input and output files for exploratory modeling"
+	"github/ictr/covid19-outbreak-simulator": {
+	"id": "github/ictr/covid19-outbreak-simulator",
+	"title": "github/ictr/covid19-outbreak-simulator",
+	"url": " https://rseng.github.io/software/repository/github/ictr/covid19-outbreak-simulator",
+	"content": "Population-based Forward-time Simulator for the Outbreak of COVID-19"
 	},
-	"github/IMMM-SFA/gamut": {
-	"id": "github/IMMM-SFA/gamut",
-	"title": "github/IMMM-SFA/gamut",
-	"url": " https://rseng.github.io/software/repository/github/IMMM-SFA/gamut",
-	"content": "An R package to identify multi-sector teleconnection complexity"
+	"github/pvlib/pvlib-python": {
+	"id": "github/pvlib/pvlib-python",
+	"title": "github/pvlib/pvlib-python",
+	"url": " https://rseng.github.io/software/repository/github/pvlib/pvlib-python",
+	"content": "A set of documented functions for simulating the performance of photovoltaic energy systems."
 	},
-	"github/jackmwolf/tehtuner": {
-	"id": "github/jackmwolf/tehtuner",
-	"title": "github/jackmwolf/tehtuner",
-	"url": " https://rseng.github.io/software/repository/github/jackmwolf/tehtuner",
-	"content": "An R Package to Fit and Tune to Models to Detect Treatment Effect Heterogeneity "
+	"github/AshleySpindler/AstroVaDEr-Public": {
+	"id": "github/AshleySpindler/AstroVaDEr-Public",
+	"title": "github/AshleySpindler/AstroVaDEr-Public",
+	"url": " https://rseng.github.io/software/repository/github/AshleySpindler/AstroVaDEr-Public",
+	"content": "None"
 	},
-	"github/rabix/cwl-format": {
-	"id": "github/rabix/cwl-format",
-	"title": "github/rabix/cwl-format",
-	"url": " https://rseng.github.io/software/repository/github/rabix/cwl-format",
-	"content": "A very opinionated code formatter for CWL"
+	"github/blankhaar/PORTAL": {
+	"id": "github/blankhaar/PORTAL",
+	"title": "github/blankhaar/PORTAL",
+	"url": " https://rseng.github.io/software/repository/github/blankhaar/PORTAL",
+	"content": "POlarized Radiative Transfer Adapted to Lines"
 	},
-	"github/jsh58/Genrich": {
-	"id": "github/jsh58/Genrich",
-	"title": "github/jsh58/Genrich",
-	"url": " https://rseng.github.io/software/repository/github/jsh58/Genrich",
-	"content": "Detecting sites of genomic enrichment"
+	"github/mwvgroup/pwv_kpno": {
+	"id": "github/mwvgroup/pwv_kpno",
+	"title": "github/mwvgroup/pwv_kpno",
+	"url": " https://rseng.github.io/software/repository/github/mwvgroup/pwv_kpno",
+	"content": "GPS modeling of the H20 atmospheric transmission at user customizable sites"
 	},
-	"github/DrJCarson/BoundedCoalescent": {
-	"id": "github/DrJCarson/BoundedCoalescent",
-	"title": "github/DrJCarson/BoundedCoalescent",
-	"url": " https://rseng.github.io/software/repository/github/DrJCarson/BoundedCoalescent",
-	"content": "Sampling and likelihood estimation for the bounded coalescent"
+	"github/klebgenomics/Kleborate": {
+	"id": "github/klebgenomics/Kleborate",
+	"title": "github/klebgenomics/Kleborate",
+	"url": " https://rseng.github.io/software/repository/github/klebgenomics/Kleborate",
+	"content": "Kleborate: a tool for typing and screening pathogen genome assemblies"
 	},
-	"github/arpan-52/Finalflash": {
-	"id": "github/arpan-52/Finalflash",
-	"title": "github/arpan-52/Finalflash",
-	"url": " https://rseng.github.io/software/repository/github/arpan-52/Finalflash",
-	"content": "An uGMRT Primary Beam Corrector with input FITS files"
+	"github/pilon/wiki": {
+	"id": "github/pilon/wiki",
+	"title": "github/pilon/wiki",
+	"url": " https://rseng.github.io/software/repository/github/pilon/wiki",
+	"content": "Pilon is a software tool which can be used to automatically improve draft assemblies and find variation among strains, including large event detection."
 	},
-	"github/alejandrobll/py-sphviewer": {
-	"id": "github/alejandrobll/py-sphviewer",
-	"title": "github/alejandrobll/py-sphviewer",
-	"url": " https://rseng.github.io/software/repository/github/alejandrobll/py-sphviewer",
-	"content": "Py-SPHViewer is a framework for rendering cosmological simulations in Python using the Smoothed Particle Hydrodynamics scheme."
+	"github/fkoehlin/montepython_2cosmos_public": {
+	"id": "github/fkoehlin/montepython_2cosmos_public",
+	"title": "github/fkoehlin/montepython_2cosmos_public",
+	"url": " https://rseng.github.io/software/repository/github/fkoehlin/montepython_2cosmos_public",
+	"content": "Public repository for the Monte Python Code modified to work with two independent cosmological parameter sets and independent cosmological calculations per likelihood."
 	},
-	"github/PyDL/cat-puma": {
-	"id": "github/PyDL/cat-puma",
-	"title": "github/PyDL/cat-puma",
-	"url": " https://rseng.github.io/software/repository/github/PyDL/cat-puma",
-	"content": "CME Arrival Time Prediction Using Machine learning Algorithms"
+	"github/HengyueZ/astrofix": {
+	"id": "github/HengyueZ/astrofix",
+	"title": "github/HengyueZ/astrofix",
+	"url": " https://rseng.github.io/software/repository/github/HengyueZ/astrofix",
+	"content": "Correcting Astronomical Bad Pixels in Python"
 	},
-	"github/reproducible-biomedical-modeling/Biosimulations": {
-	"id": "github/reproducible-biomedical-modeling/Biosimulations",
-	"title": "github/reproducible-biomedical-modeling/Biosimulations",
-	"url": " https://rseng.github.io/software/repository/github/reproducible-biomedical-modeling/Biosimulations",
-	"content": "Platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results"
+	"github/mikhailklassen/protostellar_evolution": {
+	"id": "github/mikhailklassen/protostellar_evolution",
+	"title": "github/mikhailklassen/protostellar_evolution",
+	"url": " https://rseng.github.io/software/repository/github/mikhailklassen/protostellar_evolution",
+	"content": "Evolves the radius and luminosity of a protostar from formation to a main sequence star"
 	},
-	"github/ajeldorado/falco-python": {
-	"id": "github/ajeldorado/falco-python",
-	"title": "github/ajeldorado/falco-python",
-	"url": " https://rseng.github.io/software/repository/github/ajeldorado/falco-python",
-	"content": "Fast Linearized Coronagraph Optimizer (FALCO) in Python 3"
+	"github/pedro-acunha/SHEEP": {
+	"id": "github/pedro-acunha/SHEEP",
+	"title": "github/pedro-acunha/SHEEP",
+	"url": " https://rseng.github.io/software/repository/github/pedro-acunha/SHEEP",
+	"content": "Machine Learning pipeline to classify astronomical sources into galaxies, quasars and stars using photometric data."
 	},
-	"github/ajeldorado/falco-matlab": {
-	"id": "github/ajeldorado/falco-matlab",
-	"title": "github/ajeldorado/falco-matlab",
-	"url": " https://rseng.github.io/software/repository/github/ajeldorado/falco-matlab",
-	"content": "Fast Linearized Coronagraph Optimizer (FALCO) in MATLAB"
+	"github/fulcrumgenomics/fgbio": {
+	"id": "github/fulcrumgenomics/fgbio",
+	"title": "github/fulcrumgenomics/fgbio",
+	"url": " https://rseng.github.io/software/repository/github/fulcrumgenomics/fgbio",
+	"content": "Tools for working with genomic and high throughput sequencing data."
 	},
-	"github/ppsp-team/PyNM": {
-	"id": "github/ppsp-team/PyNM",
-	"title": "github/ppsp-team/PyNM",
-	"url": " https://rseng.github.io/software/repository/github/ppsp-team/PyNM",
-	"content": "Lightweight Python implementation of Normative Modelling"
+	"github/yungkipreos/Min-CaLM": {
+	"id": "github/yungkipreos/Min-CaLM",
+	"title": "github/yungkipreos/Min-CaLM",
+	"url": " https://rseng.github.io/software/repository/github/yungkipreos/Min-CaLM",
+	"content": "This python package can perform automated mineral compositional analysis on debris disk spectra. It will determine which minerals are present and what their relative abundances are within the debris disk. This code is used in a paper that has been submitted to the American Journal of Undergraduate Research (AJUR), titled &#34;An Unbiased Mineral Compositional Analysis Technique for Debris Disks&#34; by Yung Kipreos and Dr. Inseok Song.."
 	},
-	"github/JetBrains-Research/spbla": {
-	"id": "github/JetBrains-Research/spbla",
-	"title": "github/JetBrains-Research/spbla",
-	"url": " https://rseng.github.io/software/repository/github/JetBrains-Research/spbla",
-	"content": "Sparse Boolean linear algebra for Nvidia Cuda, OpenCL and CPU computations"
+	"github/mengyao/Complete-Striped-Smith-Waterman-Library": {
+	"id": "github/mengyao/Complete-Striped-Smith-Waterman-Library",
+	"title": "github/mengyao/Complete-Striped-Smith-Waterman-Library",
+	"url": " https://rseng.github.io/software/repository/github/mengyao/Complete-Striped-Smith-Waterman-Library",
+	"content": "Smith-Waterman aligner based on libssw"
 	},
-	"github/lasseignelab/CINmetrics": {
-	"id": "github/lasseignelab/CINmetrics",
-	"title": "github/lasseignelab/CINmetrics",
-	"url": " https://rseng.github.io/software/repository/github/lasseignelab/CINmetrics",
-	"content": "CINmetrics R package"
+	"github/medema-group/bigslice": {
+	"id": "github/medema-group/bigslice",
+	"title": "github/medema-group/bigslice",
+	"url": " https://rseng.github.io/software/repository/github/medema-group/bigslice",
+	"content": "A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data"
 	},
-	"github/NKI-CCB/PRECISE": {
-	"id": "github/NKI-CCB/PRECISE",
-	"title": "github/NKI-CCB/PRECISE",
-	"url": " https://rseng.github.io/software/repository/github/NKI-CCB/PRECISE",
-	"content": "None"
+	"github/tony-travis/PIQUE": {
+	"id": "github/tony-travis/PIQUE",
+	"title": "github/tony-travis/PIQUE",
+	"url": " https://rseng.github.io/software/repository/github/tony-travis/PIQUE",
+	"content": "Parallel Identification of QTL&#39;s Using EMMAX"
 	},
-	"github/0satoken/Eclairs": {
-	"id": "github/0satoken/Eclairs",
-	"title": "github/0satoken/Eclairs",
-	"url": " https://rseng.github.io/software/repository/github/0satoken/Eclairs",
-	"content": "Efficient Codes for the LArge scales of the unIveRSe"
+	"github/AmruteLab/PyChelator": {
+	"id": "github/AmruteLab/PyChelator",
+	"title": "github/AmruteLab/PyChelator",
+	"url": " https://rseng.github.io/software/repository/github/AmruteLab/PyChelator",
+	"content": "PyChelator performs metal chelator calculations taking into account pH, temperature, and ionic strength"
 	},
-	"github/heliopython/heliopy": {
-	"id": "github/heliopython/heliopy",
-	"title": "github/heliopython/heliopy",
-	"url": " https://rseng.github.io/software/repository/github/heliopython/heliopy",
-	"content": "Python for heliospheric and planetary physics"
+	"github/sharmalab/eaglescope": {
+	"id": "github/sharmalab/eaglescope",
+	"title": "github/sharmalab/eaglescope",
+	"url": " https://rseng.github.io/software/repository/github/sharmalab/eaglescope",
+	"content": "Hierarchical and Cohort Visualization"
 	},
-	"github/mrbell/fsclean": {
-	"id": "github/mrbell/fsclean",
-	"title": "github/mrbell/fsclean",
-	"url": " https://rseng.github.io/software/repository/github/mrbell/fsclean",
-	"content": "A Faraday synthesis application that performs 3D CLEAN deconvolution of multi-frequency, polarized radio interferometric data following Bell &amp; Enßlin (2012)."
+	"github/skendrew/midIR_sensitivity": {
+	"id": "github/skendrew/midIR_sensitivity",
+	"title": "github/skendrew/midIR_sensitivity",
+	"url": " https://rseng.github.io/software/repository/github/skendrew/midIR_sensitivity",
+	"content": "Code to calculate the sensitivity of a ground-based instrument for astronomy at mid-infrared wavelengths (3-15 micron). Written for the METIS instrument for the E-ELT but easily customisable."
 	},
-	"github/HARMONI-ELT/HSIM": {
-	"id": "github/HARMONI-ELT/HSIM",
-	"title": "github/HARMONI-ELT/HSIM",
-	"url": " https://rseng.github.io/software/repository/github/HARMONI-ELT/HSIM",
-	"content": "HSIM: HARMONI simulation pipeline"
+	"github/skendrew/milkywayproject_triggering": {
+	"id": "github/skendrew/milkywayproject_triggering",
+	"title": "github/skendrew/milkywayproject_triggering",
+	"url": " https://rseng.github.io/software/repository/github/skendrew/milkywayproject_triggering",
+	"content": "Code to calculate correlation functions for two (astrophysical) catalogue datasets"
 	},
-	"github/jeffdaily/parasail": {
-	"id": "github/jeffdaily/parasail",
-	"title": "github/jeffdaily/parasail",
-	"url": " https://rseng.github.io/software/repository/github/jeffdaily/parasail",
-	"content": "Pairwise Sequence Alignment Library"
+	"github/HITS-AIN/PINK": {
+	"id": "github/HITS-AIN/PINK",
+	"title": "github/HITS-AIN/PINK",
+	"url": " https://rseng.github.io/software/repository/github/HITS-AIN/PINK",
+	"content": "Parallelized rotation and flipping INvariant Kohonen maps"
 	},
-	"github/jeffdaily/parasail-python": {
-	"id": "github/jeffdaily/parasail-python",
-	"title": "github/jeffdaily/parasail-python",
-	"url": " https://rseng.github.io/software/repository/github/jeffdaily/parasail-python",
-	"content": "Python bindings for the parasail C library."
+	"github/HITS-AIN/GPCC.jl": {
+	"id": "github/HITS-AIN/GPCC.jl",
+	"title": "github/HITS-AIN/GPCC.jl",
+	"url": " https://rseng.github.io/software/repository/github/HITS-AIN/GPCC.jl",
+	"content": "Gaussian process cross correlation"
 	},
-	"github/Hoohm/CITE-seq-Count": {
-	"id": "github/Hoohm/CITE-seq-Count",
-	"title": "github/Hoohm/CITE-seq-Count",
-	"url": " https://rseng.github.io/software/repository/github/Hoohm/CITE-seq-Count",
-	"content": "A tool that allows to get UMI counts from a single cell protein assay"
+	"github/Magritte-code/Magritte": {
+	"id": "github/Magritte-code/Magritte",
+	"title": "github/Magritte-code/Magritte",
+	"url": " https://rseng.github.io/software/repository/github/Magritte-code/Magritte",
+	"content": "A modern software library for simulating radiation transport."
 	},
-	"github/musevlt/origin": {
-	"id": "github/musevlt/origin",
-	"title": "github/musevlt/origin",
-	"url": " https://rseng.github.io/software/repository/github/musevlt/origin",
-	"content": "ORIGIN: detectiOn and extRactIon of Galaxy emIssion liNes"
+	"github/Magritte-code/pomme": {
+	"id": "github/Magritte-code/pomme",
+	"title": "github/Magritte-code/pomme",
+	"url": " https://rseng.github.io/software/repository/github/Magritte-code/pomme",
+	"content": "Bayesian model reconstruction based on astronomical spectral line observations."
 	},
-	"github/musevlt/muse-psfr": {
-	"id": "github/musevlt/muse-psfr",
-	"title": "github/musevlt/muse-psfr",
-	"url": " https://rseng.github.io/software/repository/github/musevlt/muse-psfr",
-	"content": "MUSE-PSFR - PSF reconstruction for MUSE WFM-AO"
+	"github/automl/amltk": {
+	"id": "github/automl/amltk",
+	"title": "github/automl/amltk",
+	"url": " https://rseng.github.io/software/repository/github/automl/amltk",
+	"content": "A build-it-yourself AutoML Framework"
 	},
-	"github/KarrLab/de_sim": {
-	"id": "github/KarrLab/de_sim",
-	"title": "github/KarrLab/de_sim",
-	"url": " https://rseng.github.io/software/repository/github/KarrLab/de_sim",
-	"content": "Python-based object-oriented discrete-event simulation tool for complex, data-driven modeling"
+	"github/pyro-ppl/pyro": {
+	"id": "github/pyro-ppl/pyro",
+	"title": "github/pyro-ppl/pyro",
+	"url": " https://rseng.github.io/software/repository/github/pyro-ppl/pyro",
+	"content": "Deep universal probabilistic programming with Python and PyTorch"
 	},
-	"github/Zilong-Li/PCAone": {
-	"id": "github/Zilong-Li/PCAone",
-	"title": "github/Zilong-Li/PCAone",
-	"url": " https://rseng.github.io/software/repository/github/Zilong-Li/PCAone",
-	"content": "Principal Component Analysis All in One"
+	"github/statsmodels/statsmodels": {
+	"id": "github/statsmodels/statsmodels",
+	"title": "github/statsmodels/statsmodels",
+	"url": " https://rseng.github.io/software/repository/github/statsmodels/statsmodels",
+	"content": "Statsmodels: statistical modeling and econometrics in Python"
 	},
-	"github/stevengj/nlopt": {
-	"id": "github/stevengj/nlopt",
-	"title": "github/stevengj/nlopt",
-	"url": " https://rseng.github.io/software/repository/github/stevengj/nlopt",
-	"content": "library for nonlinear optimization, wrapping many algorithms for global and local, constrained or unconstrained, optimization"
+	"github/PaulHancock/Aegean": {
+	"id": "github/PaulHancock/Aegean",
+	"title": "github/PaulHancock/Aegean",
+	"url": " https://rseng.github.io/software/repository/github/PaulHancock/Aegean",
+	"content": "The Aegean source finding program and associated tools"
 	},
-	"github/cov-lineages/pangoLEARN": {
-	"id": "github/cov-lineages/pangoLEARN",
-	"title": "github/cov-lineages/pangoLEARN",
-	"url": " https://rseng.github.io/software/repository/github/cov-lineages/pangoLEARN",
-	"content": "Store of the trained model for pangolin to access."
+	"github/PaulHancock/Robbie": {
+	"id": "github/PaulHancock/Robbie",
+	"title": "github/PaulHancock/Robbie",
+	"url": " https://rseng.github.io/software/repository/github/PaulHancock/Robbie",
+	"content": "Robbie: A batch processing work-flow for the detection of radio transients and variables"
 	},
-	"github/cov-lineages/pangolin": {
-	"id": "github/cov-lineages/pangolin",
-	"title": "github/cov-lineages/pangolin",
-	"url": " https://rseng.github.io/software/repository/github/cov-lineages/pangolin",
-	"content": "Software package for assigning SARS-CoV-2 genome sequences to global lineages."
+	"github/lskatz/fasten": {
+	"id": "github/lskatz/fasten",
+	"title": "github/lskatz/fasten",
+	"url": " https://rseng.github.io/software/repository/github/lskatz/fasten",
+	"content": ":construction_worker: Fasten toolkit, for streaming operations on fastq files"
 	},
-	"github/traja-team/traja": {
-	"id": "github/traja-team/traja",
-	"title": "github/traja-team/traja",
-	"url": " https://rseng.github.io/software/repository/github/traja-team/traja",
-	"content": "Python tools for spatial trajectory and time-series data analysis"
+	"github/lskatz/SneakerNet": {
+	"id": "github/lskatz/SneakerNet",
+	"title": "github/lskatz/SneakerNet",
+	"url": " https://rseng.github.io/software/repository/github/lskatz/SneakerNet",
+	"content": ":feet: QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run"
+	},
+	"github/callendeprieto/ferre": {
+	"id": "github/callendeprieto/ferre",
+	"title": "github/callendeprieto/ferre",
+	"url": " https://rseng.github.io/software/repository/github/callendeprieto/ferre",
+	"content": "FERRE matches physical models to measurements"
+	},
+	"github/liamedeiros/ehtplot": {
+	"id": "github/liamedeiros/ehtplot",
+	"title": "github/liamedeiros/ehtplot",
+	"url": " https://rseng.github.io/software/repository/github/liamedeiros/ehtplot",
+	"content": "Plotting functions for the Event Horizon Telescope"
 	},
-	"github/NeotomaDB/neotoma2": {
-	"id": "github/NeotomaDB/neotoma2",
-	"title": "github/NeotomaDB/neotoma2",
-	"url": " https://rseng.github.io/software/repository/github/NeotomaDB/neotoma2",
-	"content": "Repository for the updated neotoma R package."
+	"github/ptriska/WavesDash": {
+	"id": "github/ptriska/WavesDash",
+	"title": "github/ptriska/WavesDash",
+	"url": " https://rseng.github.io/software/repository/github/ptriska/WavesDash",
+	"content": "A web application for visualization of wastewater sequencing results"
 	},
-	"github/shangguandong1996/FindIT2": {
-	"id": "github/shangguandong1996/FindIT2",
-	"title": "github/shangguandong1996/FindIT2",
-	"url": " https://rseng.github.io/software/repository/github/shangguandong1996/FindIT2",
-	"content": "None"
+	"github/cwentland0/perform": {
+	"id": "github/cwentland0/perform",
+	"title": "github/cwentland0/perform",
+	"url": " https://rseng.github.io/software/repository/github/cwentland0/perform",
+	"content": "One-dimensional unsteady compressible reacting flow simulation framework, designed for simple prototyping and testing of novel reduced-order model methods."
 	},
-	"github/JulianZDing/UniMAP": {
-	"id": "github/JulianZDing/UniMAP",
-	"title": "github/JulianZDing/UniMAP",
-	"url": " https://rseng.github.io/software/repository/github/JulianZDing/UniMAP",
-	"content": "None"
+	"github/danhey/maelstrom": {
+	"id": "github/danhey/maelstrom",
+	"title": "github/danhey/maelstrom",
+	"url": " https://rseng.github.io/software/repository/github/danhey/maelstrom",
+	"content": "Forward modelling of pulsating stars in binaries"
 	},
-	"github/Ruiz-HCI-Lab/ggMOB": {
-	"id": "github/Ruiz-HCI-Lab/ggMOB",
-	"title": "github/Ruiz-HCI-Lab/ggMOB",
-	"url": " https://rseng.github.io/software/repository/github/Ruiz-HCI-Lab/ggMOB",
-	"content": "None"
+	"github/danhey/echelle": {
+	"id": "github/danhey/echelle",
+	"title": "github/danhey/echelle",
+	"url": " https://rseng.github.io/software/repository/github/danhey/echelle",
+	"content": "Dynamic echelle diagrams for asteroseismology"
 	},
-	"github/philres/catfishq": {
-	"id": "github/philres/catfishq",
-	"title": "github/philres/catfishq",
-	"url": " https://rseng.github.io/software/repository/github/philres/catfishq",
-	"content": "Cat FASTQ files"
+	"github/MADHATdm/MADHAT": {
+	"id": "github/MADHATdm/MADHAT",
+	"title": "github/MADHATdm/MADHAT",
+	"url": " https://rseng.github.io/software/repository/github/MADHATdm/MADHAT",
+	"content": "Model-Agnostic Dark Halo Analysis Tool"
 	},
-	"github/philres/ngmlr": {
-	"id": "github/philres/ngmlr",
-	"title": "github/philres/ngmlr",
-	"url": " https://rseng.github.io/software/repository/github/philres/ngmlr",
-	"content": "NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations"
+	"github/uedaLabR/nanoDoc": {
+	"id": "github/uedaLabR/nanoDoc",
+	"title": "github/uedaLabR/nanoDoc",
+	"url": " https://rseng.github.io/software/repository/github/uedaLabR/nanoDoc",
+	"content": "RNA modification detection using Nanopore raw reads with Deep One Class classification"
 	},
-	"github/AstarVienna/irdb": {
-	"id": "github/AstarVienna/irdb",
-	"title": "github/AstarVienna/irdb",
-	"url": " https://rseng.github.io/software/repository/github/AstarVienna/irdb",
-	"content": "A database containing instrument data for infrared telescopes"
+	"github/garrelt/C2-Ray1D": {
+	"id": "github/garrelt/C2-Ray1D",
+	"title": "github/garrelt/C2-Ray1D",
+	"url": " https://rseng.github.io/software/repository/github/garrelt/C2-Ray1D",
+	"content": "1D version of C2-Ray"
 	},
-	"github/AstarVienna/AnisoCADO": {
-	"id": "github/AstarVienna/AnisoCADO",
-	"title": "github/AstarVienna/AnisoCADO",
-	"url": " https://rseng.github.io/software/repository/github/AstarVienna/AnisoCADO",
-	"content": "A package to generate off-axis PSFs for the SCAO mode for MICADO at the ELT"
+	"github/garrelt/C2-Ray3Dm1D_Helium": {
+	"id": "github/garrelt/C2-Ray3Dm1D_Helium",
+	"title": "github/garrelt/C2-Ray3Dm1D_Helium",
+	"url": " https://rseng.github.io/software/repository/github/garrelt/C2-Ray3Dm1D_Helium",
+	"content": "C2-Ray radiative transfer / photo-ionziation code, version with helium, combining 1D and 3D"
 	},
-	"github/AstarVienna/skycalc_ipy": {
-	"id": "github/AstarVienna/skycalc_ipy",
-	"title": "github/AstarVienna/skycalc_ipy",
-	"url": " https://rseng.github.io/software/repository/github/AstarVienna/skycalc_ipy",
-	"content": "iPython version of skycalc_cli"
+	"github/wajidarshad/ESIDE": {
+	"id": "github/wajidarshad/ESIDE",
+	"title": "github/wajidarshad/ESIDE",
+	"url": " https://rseng.github.io/software/repository/github/wajidarshad/ESIDE",
+	"content": "Earthworm Species IDEntification"
 	},
-	"github/AstarVienna/ScopeSim_Templates": {
-	"id": "github/AstarVienna/ScopeSim_Templates",
-	"title": "github/AstarVienna/ScopeSim_Templates",
-	"url": " https://rseng.github.io/software/repository/github/AstarVienna/ScopeSim_Templates",
-	"content": "None"
+	"github/OceanParcels/plasticparcels": {
+	"id": "github/OceanParcels/plasticparcels",
+	"title": "github/OceanParcels/plasticparcels",
+	"url": " https://rseng.github.io/software/repository/github/OceanParcels/plasticparcels",
+	"content": "Repository for PlasticParcels tool"
 	},
-	"github/AstarVienna/Pyckles": {
-	"id": "github/AstarVienna/Pyckles",
-	"title": "github/AstarVienna/Pyckles",
-	"url": " https://rseng.github.io/software/repository/github/AstarVienna/Pyckles",
-	"content": "A super lightweight interface to load spectra from the Pickles 1998 catalogue"
+	"github/viromelab/tracespipe": {
+	"id": "github/viromelab/tracespipe",
+	"title": "github/viromelab/tracespipe",
+	"url": " https://rseng.github.io/software/repository/github/viromelab/tracespipe",
+	"content": "Reconstruction and analysis of viral and host genomes at multi-organ level"
 	},
-	"github/VegeWaterDynamics/motrainer": {
-	"id": "github/VegeWaterDynamics/motrainer",
-	"title": "github/VegeWaterDynamics/motrainer",
-	"url": " https://rseng.github.io/software/repository/github/VegeWaterDynamics/motrainer",
-	"content": "Distributed Measurement Operator Trainer for Data Assimilation Applications"
+	"github/dengzhuo-AI/Real-Fundus": {
+	"id": "github/dengzhuo-AI/Real-Fundus",
+	"title": "github/dengzhuo-AI/Real-Fundus",
+	"url": " https://rseng.github.io/software/repository/github/dengzhuo-AI/Real-Fundus",
+	"content": "None"
 	},
-	"github/deaglanbartlett/symbolic_pofk": {
-	"id": "github/deaglanbartlett/symbolic_pofk",
-	"title": "github/deaglanbartlett/symbolic_pofk",
-	"url": " https://rseng.github.io/software/repository/github/deaglanbartlett/symbolic_pofk",
-	"content": "Precise symbolic emulators of the linear and nonlinear matter power spectrum"
+	"github/barklem/hlinop": {
+	"id": "github/barklem/hlinop",
+	"title": "github/barklem/hlinop",
+	"url": " https://rseng.github.io/software/repository/github/barklem/hlinop",
+	"content": "Codes for modelling hydrogen line opacity in stellar atmospheres.  See Barklem &amp; Piskunov (2003)"
 	},
-	"github/MesquiteProject/MesquiteCore": {
-	"id": "github/MesquiteProject/MesquiteCore",
-	"title": "github/MesquiteProject/MesquiteCore",
-	"url": " https://rseng.github.io/software/repository/github/MesquiteProject/MesquiteCore",
-	"content": "The core Mesquite repository"
+	"github/barklem/mswavef": {
+	"id": "github/barklem/mswavef",
+	"title": "github/barklem/mswavef",
+	"url": " https://rseng.github.io/software/repository/github/barklem/mswavef",
+	"content": "Code to calculate hydrogenic and non-hydrogenic momentum-space electronic wavefunctions"
 	},
-	"github/jakeown/astroclover": {
-	"id": "github/jakeown/astroclover",
-	"title": "github/jakeown/astroclover",
-	"url": " https://rseng.github.io/software/repository/github/jakeown/astroclover",
-	"content": "Convnet Line-fitting Of Velocities in Emission-line Regions (CLOVER)"
+	"github/barklem/kaulakys": {
+	"id": "github/barklem/kaulakys",
+	"title": "github/barklem/kaulakys",
+	"url": " https://rseng.github.io/software/repository/github/barklem/kaulakys",
+	"content": "Code to calculate cross sections and rate coefficients for inelastic collisions between Rydberg atoms and hydrogen atoms according to the free electron model of Kaulakys (1986, 1991)."
 	},
-	"github/samsledje/ConPLex_dev": {
-	"id": "github/samsledje/ConPLex_dev",
-	"title": "github/samsledje/ConPLex_dev",
-	"url": " https://rseng.github.io/software/repository/github/samsledje/ConPLex_dev",
-	"content": "None"
+	"github/barklem/abo-cross": {
+	"id": "github/barklem/abo-cross",
+	"title": "github/barklem/abo-cross",
+	"url": " https://rseng.github.io/software/repository/github/barklem/abo-cross",
+	"content": "Interpolate in Anstee-Barklem-O&#39;Mara cross sections for collisional broadening due to hydrogen"
 	},
-	"github/miguelzuma/hi_class_public": {
-	"id": "github/miguelzuma/hi_class_public",
-	"title": "github/miguelzuma/hi_class_public",
-	"url": " https://rseng.github.io/software/repository/github/miguelzuma/hi_class_public",
-	"content": "Public version of Horndeski in the Cosmic Linear Anisotropy Solving System"
+	"github/Crick-CancerGenomics/ascat": {
+	"id": "github/Crick-CancerGenomics/ascat",
+	"title": "github/Crick-CancerGenomics/ascat",
+	"url": " https://rseng.github.io/software/repository/github/Crick-CancerGenomics/ascat",
+	"content": "ASCAT copy number R package"
 	},
-	"github/rdicosmo/parmap": {
-	"id": "github/rdicosmo/parmap",
-	"title": "github/rdicosmo/parmap",
-	"url": " https://rseng.github.io/software/repository/github/rdicosmo/parmap",
-	"content": "Parmap is a minimalistic library allowing to exploit multicore architecture for OCaml programs with minimal modifications."
+	"github/CMU-SAFARI/BLEND": {
+	"id": "github/CMU-SAFARI/BLEND",
+	"title": "github/CMU-SAFARI/BLEND",
+	"url": " https://rseng.github.io/software/repository/github/CMU-SAFARI/BLEND",
+	"content": "BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important applications: 1) finding overlapping reads and 2) read mapping. Described by Firtina et al. (published in NARGAB https://doi.org/10.1093/nargab/lqad004)"
 	},
-	"github/jakeret/abcpmc": {
-	"id": "github/jakeret/abcpmc",
-	"title": "github/jakeret/abcpmc",
-	"url": " https://rseng.github.io/software/repository/github/jakeret/abcpmc",
-	"content": "Approximate Bayesian Computation Population Monte Carlo"
+	"github/musoke/ultradark.jl": {
+	"id": "github/musoke/ultradark.jl",
+	"title": "github/musoke/ultradark.jl",
+	"url": " https://rseng.github.io/software/repository/github/musoke/ultradark.jl",
+	"content": "Simulations of cosmological scalar fields"
 	},
-	"github/jakeret/tf_unet": {
-	"id": "github/jakeret/tf_unet",
-	"title": "github/jakeret/tf_unet",
-	"url": " https://rseng.github.io/software/repository/github/jakeret/tf_unet",
-	"content": "Generic U-Net Tensorflow implementation for image segmentation"
+	"github/musoke/UltraDark.jl": {
+	"id": "github/musoke/UltraDark.jl",
+	"title": "github/musoke/UltraDark.jl",
+	"url": " https://rseng.github.io/software/repository/github/musoke/UltraDark.jl",
+	"content": "Simulations of cosmological scalar fields"
 	},
-	"github/IBM/topography-searcher": {
-	"id": "github/IBM/topography-searcher",
-	"title": "github/IBM/topography-searcher",
-	"url": " https://rseng.github.io/software/repository/github/IBM/topography-searcher",
-	"content": "This Python package is designed for mapping the solution space of machine learning models. An understanding of the organisation of the solution space can answer important questions about the reproducibility, explainability and performance of ML methods."
+	"github/lgbouma/gyro-interp": {
+	"id": "github/lgbouma/gyro-interp",
+	"title": "github/lgbouma/gyro-interp",
+	"url": " https://rseng.github.io/software/repository/github/lgbouma/gyro-interp",
+	"content": "Gyrochronology via interpolation of open cluster rotation sequences."
 	},
-	"github/IBM/fold2seq": {
-	"id": "github/IBM/fold2seq",
-	"title": "github/IBM/fold2seq",
-	"url": " https://rseng.github.io/software/repository/github/IBM/fold2seq",
-	"content": "Code for Fold2Seq paper from ICML 2021"
+	"github/luinix/pesco": {
+	"id": "github/luinix/pesco",
+	"title": "github/luinix/pesco",
+	"url": " https://rseng.github.io/software/repository/github/luinix/pesco",
+	"content": "Cognitive stimulation tool for elderly or cognitively impaired"
 	},
-	"github/epfl-radio-astro/LiSA": {
-	"id": "github/epfl-radio-astro/LiSA",
-	"title": "github/epfl-radio-astro/LiSA",
-	"url": " https://rseng.github.io/software/repository/github/epfl-radio-astro/LiSA",
-	"content": "Lightweight Source finding Algorithms"
+	"github/mpi4jax/mpi4jax": {
+	"id": "github/mpi4jax/mpi4jax",
+	"title": "github/mpi4jax/mpi4jax",
+	"url": " https://rseng.github.io/software/repository/github/mpi4jax/mpi4jax",
+	"content": "Zero-copy MPI communication of JAX arrays, for turbo-charged HPC applications in Python :zap:"
 	},
-	"github/epfl-radio-astro/PINION": {
-	"id": "github/epfl-radio-astro/PINION",
-	"title": "github/epfl-radio-astro/PINION",
-	"url": " https://rseng.github.io/software/repository/github/epfl-radio-astro/PINION",
-	"content": "A featherweight EoR simulation"
+	"github/jdber1/opendrop": {
+	"id": "github/jdber1/opendrop",
+	"title": "github/jdber1/opendrop",
+	"url": " https://rseng.github.io/software/repository/github/jdber1/opendrop",
+	"content": "OpenDrop pendant drop tensiometry software"
 	},
-	"github/taehoryu/TDEmass": {
-	"id": "github/taehoryu/TDEmass",
-	"title": "github/taehoryu/TDEmass",
-	"url": " https://rseng.github.io/software/repository/github/taehoryu/TDEmass",
-	"content": "None"
+	"github/bezuidenhoutmc/SeeKAT": {
+	"id": "github/bezuidenhoutmc/SeeKAT",
+	"title": "github/bezuidenhoutmc/SeeKAT",
+	"url": " https://rseng.github.io/software/repository/github/bezuidenhoutmc/SeeKAT",
+	"content": "A code for localising a single pulse detected in multiple interferometer beams."
 	},
-	"github/jts/nanopolish": {
-	"id": "github/jts/nanopolish",
-	"title": "github/jts/nanopolish",
-	"url": " https://rseng.github.io/software/repository/github/jts/nanopolish",
-	"content": "Signal-level algorithms for MinION data"
+	"github/ElectionDataAnalysis/electiondata": {
+	"id": "github/ElectionDataAnalysis/electiondata",
+	"title": "github/ElectionDataAnalysis/electiondata",
+	"url": " https://rseng.github.io/software/repository/github/ElectionDataAnalysis/electiondata",
+	"content": "Tools for consolidation and analysis of raw election results from the most reliable sources -- the election agencies themselves."
 	},
-	"github/jts/sga": {
-	"id": "github/jts/sga",
-	"title": "github/jts/sga",
-	"url": " https://rseng.github.io/software/repository/github/jts/sga",
-	"content": "de novo sequence assembler using string graphs"
+	"github/ddarriba/prottest3": {
+	"id": "github/ddarriba/prottest3",
+	"title": "github/ddarriba/prottest3",
+	"url": " https://rseng.github.io/software/repository/github/ddarriba/prottest3",
+	"content": "Automatically exported from code.google.com/p/prottest3"
 	},
-	"github/PrincetonUniversity/FastTemplatePeriodogram": {
-	"id": "github/PrincetonUniversity/FastTemplatePeriodogram",
-	"title": "github/PrincetonUniversity/FastTemplatePeriodogram",
-	"url": " https://rseng.github.io/software/repository/github/PrincetonUniversity/FastTemplatePeriodogram",
-	"content": "NlogN algorithm for least-squares fitting of periodic templates to noisy, non-equispaced time-series data."
+	"github/aboucaud/pypher": {
+	"id": "github/aboucaud/pypher",
+	"title": "github/aboucaud/pypher",
+	"url": " https://rseng.github.io/software/repository/github/aboucaud/pypher",
+	"content": "PSF Homogenization kERnels"
 	},
-	"github/PrincetonUniversity/athena": {
-	"id": "github/PrincetonUniversity/athena",
-	"title": "github/PrincetonUniversity/athena",
-	"url": " https://rseng.github.io/software/repository/github/PrincetonUniversity/athena",
-	"content": "Athena++ GRMHD code and adaptive mesh refinement (AMR) framework"
+	"github/ropensci-archive/monkeylearn": {
+	"id": "github/ropensci-archive/monkeylearn",
+	"title": "github/ropensci-archive/monkeylearn",
+	"url": " https://rseng.github.io/software/repository/github/ropensci-archive/monkeylearn",
+	"content": ":no_entry: ARCHIVED :no_entry: :monkey: R package for text analysis with Monkeylearn :monkey:"
 	},
-	"github/PrincetonUniversity/Athena-Cversion": {
-	"id": "github/PrincetonUniversity/Athena-Cversion",
-	"title": "github/PrincetonUniversity/Athena-Cversion",
-	"url": " https://rseng.github.io/software/repository/github/PrincetonUniversity/Athena-Cversion",
-	"content": "None"
+	"github/ropensci-archive/arresteddev": {
+	"id": "github/ropensci-archive/arresteddev",
+	"title": "github/ropensci-archive/arresteddev",
+	"url": " https://rseng.github.io/software/repository/github/ropensci-archive/arresteddev",
+	"content": "Arrested Development"
 	},
-	"github/holmescao/ANTS_marking_and_analysis_tools": {
-	"id": "github/holmescao/ANTS_marking_and_analysis_tools",
-	"title": "github/holmescao/ANTS_marking_and_analysis_tools",
-	"url": " https://rseng.github.io/software/repository/github/holmescao/ANTS_marking_and_analysis_tools",
-	"content": "None"
+	"github/ropensci-archive/rodev": {
+	"id": "github/ropensci-archive/rodev",
+	"title": "github/ropensci-archive/rodev",
+	"url": " https://rseng.github.io/software/repository/github/ropensci-archive/rodev",
+	"content": "Helpers for rOpenSci Package Authors :package: :sparkles:"
 	},
-	"github/anwarbio/bioassays": {
-	"id": "github/anwarbio/bioassays",
-	"title": "github/anwarbio/bioassays",
-	"url": " https://rseng.github.io/software/repository/github/anwarbio/bioassays",
-	"content": "None"
+	"github/ropensci-archive/reviewer": {
+	"id": "github/ropensci-archive/reviewer",
+	"title": "github/ropensci-archive/reviewer",
+	"url": " https://rseng.github.io/software/repository/github/ropensci-archive/reviewer",
+	"content": ":no_entry: ARCHIVED :no_entry:  Improving the track changes and reviewing experience in R markdown"
 	},
-	"github/tylertrimble/viswaternet": {
-	"id": "github/tylertrimble/viswaternet",
-	"title": "github/tylertrimble/viswaternet",
-	"url": " https://rseng.github.io/software/repository/github/tylertrimble/viswaternet",
-	"content": "A Python package for easy generation and customization of water distribution network visualizations."
+	"github/APGG-Lab/APGG": {
+	"id": "github/APGG-Lab/APGG",
+	"title": "github/APGG-Lab/APGG",
+	"url": " https://rseng.github.io/software/repository/github/APGG-Lab/APGG",
+	"content": "A Modular Toolkit for Public Goods Game Computation"
 	},
-	"github/davideamato/NAPLES": {
-	"id": "github/davideamato/NAPLES",
-	"title": "github/davideamato/NAPLES",
-	"url": " https://rseng.github.io/software/repository/github/davideamato/NAPLES",
-	"content": "NAPLES (Numerical Analysis of PLanetary EncounterS) is a Fortran code for the numerical analysis of close encounters in the Circular, Restricted Three-Body Problem using regularized formulations."
+	"github/signalling-games-org/evoke": {
+	"id": "github/signalling-games-org/evoke",
+	"title": "github/signalling-games-org/evoke",
+	"url": " https://rseng.github.io/software/repository/github/signalling-games-org/evoke",
+	"content": "A Python package for evolutionary signalling games"
 	},
-	"github/euclidlib/euclidlib": {
-	"id": "github/euclidlib/euclidlib",
-	"title": "github/euclidlib/euclidlib",
-	"url": " https://rseng.github.io/software/repository/github/euclidlib/euclidlib",
-	"content": "Unofficial python library for reading data products from the Euclid mission"
+	"github/blind-contours/CVtreeMLE": {
+	"id": "github/blind-contours/CVtreeMLE",
+	"title": "github/blind-contours/CVtreeMLE",
+	"url": " https://rseng.github.io/software/repository/github/blind-contours/CVtreeMLE",
+	"content": ":deciduous_tree: :dart: Cross Validated Decision Trees with Targeted Maximum Likelihood Estimation"
 	},
-	"github/haoharryfeng/NeuCA": {
-	"id": "github/haoharryfeng/NeuCA",
-	"title": "github/haoharryfeng/NeuCA",
-	"url": " https://rseng.github.io/software/repository/github/haoharryfeng/NeuCA",
-	"content": "Neural-network based Cell Annotation tool"
+	"github/blind-contours/SuperNOVA": {
+	"id": "github/blind-contours/SuperNOVA",
+	"title": "github/blind-contours/SuperNOVA",
+	"url": " https://rseng.github.io/software/repository/github/blind-contours/SuperNOVA",
+	"content": ":dizzy: :dart: Automatic identification of variable and interaction importance using basis functions and non-parametric estimation of interactions/effect modification using joint stochastic interventions."
 	},
-	"github/Qiskit-Extensions/qiskit-dynamics": {
-	"id": "github/Qiskit-Extensions/qiskit-dynamics",
-	"title": "github/Qiskit-Extensions/qiskit-dynamics",
-	"url": " https://rseng.github.io/software/repository/github/Qiskit-Extensions/qiskit-dynamics",
-	"content": "Tools for building and solving models of quantum systems in Qiskit"
+	"github/BaroudLab/Griottes": {
+	"id": "github/BaroudLab/Griottes",
+	"title": "github/BaroudLab/Griottes",
+	"url": " https://rseng.github.io/software/repository/github/BaroudLab/Griottes",
+	"content": "Python program to generate NetworkX graphs from segmented images."
 	},
-	"github/Ajstros/pyripherals": {
-	"id": "github/Ajstros/pyripherals",
-	"title": "github/Ajstros/pyripherals",
-	"url": " https://rseng.github.io/software/repository/github/Ajstros/pyripherals",
-	"content": "Python solution for communicating with peripheral ICs"
+	"github/johnveitch/cpnest": {
+	"id": "github/johnveitch/cpnest",
+	"title": "github/johnveitch/cpnest",
+	"url": " https://rseng.github.io/software/repository/github/johnveitch/cpnest",
+	"content": "Parallel nested sampling"
 	},
-	"github/binzhulab/SUITOR": {
-	"id": "github/binzhulab/SUITOR",
-	"title": "github/binzhulab/SUITOR",
-	"url": " https://rseng.github.io/software/repository/github/binzhulab/SUITOR",
+	"github/chenjj2/forecaster": {
+	"id": "github/chenjj2/forecaster",
+	"title": "github/chenjj2/forecaster",
+	"url": " https://rseng.github.io/software/repository/github/chenjj2/forecaster",
 	"content": "None"
 	},
-	"github/wfondrie/mokapot": {
-	"id": "github/wfondrie/mokapot",
-	"title": "github/wfondrie/mokapot",
-	"url": " https://rseng.github.io/software/repository/github/wfondrie/mokapot",
-	"content": "Fast and flexible semi-supervised learning for peptide detection in Python"
+	"github/ViennaRNA/RNAblueprint": {
+	"id": "github/ViennaRNA/RNAblueprint",
+	"title": "github/ViennaRNA/RNAblueprint",
+	"url": " https://rseng.github.io/software/repository/github/ViennaRNA/RNAblueprint",
+	"content": "RNAblueprint library for uniform sampling of RNA sequences given structural and sequence constraints"
 	},
-	"github/iipharma/pharmamind-molminer": {
-	"id": "github/iipharma/pharmamind-molminer",
-	"title": "github/iipharma/pharmamind-molminer",
-	"url": " https://rseng.github.io/software/repository/github/iipharma/pharmamind-molminer",
-	"content": "PharmaMind® is an innovative drug discovery platform that integrates advanced artificial intelligence and computational simulation design techniques, which is suitable for real-world novel drug R&amp;D."
+	"github/votca/xtp": {
+	"id": "github/votca/xtp",
+	"title": "github/votca/xtp",
+	"url": " https://rseng.github.io/software/repository/github/votca/xtp",
+	"content": "GW-BSE for excited state Quantum Chemistry in a Gaussian Orbital basis, electronic spectroscopy with QM/MM, charge and energy dynamics in complex molecular systems"
 	},
-	"github/whybsml/whybsml": {
-	"id": "github/whybsml/whybsml",
-	"title": "github/whybsml/whybsml",
-	"url": " https://rseng.github.io/software/repository/github/whybsml/whybsml",
+	"github/mzechmeister/serval": {
+	"id": "github/mzechmeister/serval",
+	"title": "github/mzechmeister/serval",
+	"url": " https://rseng.github.io/software/repository/github/mzechmeister/serval",
+	"content": "calculate radial velocities from stellar spectra"
+	},
+	"github/mzechmeister/viper": {
+	"id": "github/mzechmeister/viper",
+	"title": "github/mzechmeister/viper",
+	"url": " https://rseng.github.io/software/repository/github/mzechmeister/viper",
 	"content": "None"
 	},
-	"github/NoahSailer/FishLSS": {
-	"id": "github/NoahSailer/FishLSS",
-	"title": "github/NoahSailer/FishLSS",
-	"url": " https://rseng.github.io/software/repository/github/NoahSailer/FishLSS",
-	"content": "Fisher forecasting code for Large Scale Structure surveys using Lagrangian Perturbation Theory."
+	"github/GoelandProver/Goeland": {
+	"id": "github/GoelandProver/Goeland",
+	"title": "github/GoelandProver/Goeland",
+	"url": " https://rseng.github.io/software/repository/github/GoelandProver/Goeland",
+	"content": "A first-order concurrent automated theorem prover"
 	},
-	"github/ianfhunter/GNOLL": {
-	"id": "github/ianfhunter/GNOLL",
-	"title": "github/ianfhunter/GNOLL",
-	"url": " https://rseng.github.io/software/repository/github/ianfhunter/GNOLL",
-	"content": "GNOLL is an efficient dice notation parser for multiple programming languages that supports a wide set of dice notation"
+	"github/tensorly/viz": {
+	"id": "github/tensorly/viz",
+	"title": "github/tensorly/viz",
+	"url": " https://rseng.github.io/software/repository/github/tensorly/viz",
+	"content": "Easy visualization and evaluation of matrix and tensor factorization models"
 	},
-	"github/bhorowitz/HyPhy-public": {
-	"id": "github/bhorowitz/HyPhy-public",
-	"title": "github/bhorowitz/HyPhy-public",
-	"url": " https://rseng.github.io/software/repository/github/bhorowitz/HyPhy-public",
-	"content": "Deep generative model for painting hydrodynamical physics onto dark matter simulations"
+	"github/PFPE/shipgrav": {
+	"id": "github/PFPE/shipgrav",
+	"title": "github/PFPE/shipgrav",
+	"url": " https://rseng.github.io/software/repository/github/PFPE/shipgrav",
+	"content": "Marine gravity processing for UNOLS (Python)"
 	},
-	"github/flosalbizziae/kataegis": {
-	"id": "github/flosalbizziae/kataegis",
-	"title": "github/flosalbizziae/kataegis",
-	"url": " https://rseng.github.io/software/repository/github/flosalbizziae/kataegis",
-	"content": "None"
+	"github/davidkipping/ECCSAMPLES": {
+	"id": "github/davidkipping/ECCSAMPLES",
+	"title": "github/davidkipping/ECCSAMPLES",
+	"url": " https://rseng.github.io/software/repository/github/davidkipping/ECCSAMPLES",
+	"content": "Sample from an informative prior to enforce a realistic prior on parameters such as the orbital eccentricity of an extrasolar planet. This is done by evaluating the inverse cumulative density function of the prior distribution."
 	},
-	"github/adrn/SuperFreq": {
-	"id": "github/adrn/SuperFreq",
-	"title": "github/adrn/SuperFreq",
-	"url": " https://rseng.github.io/software/repository/github/adrn/SuperFreq",
-	"content": "Numerically determine the fundamental frequencies of an orbit"
+	"github/davidkipping/MAH": {
+	"id": "github/davidkipping/MAH",
+	"title": "github/davidkipping/MAH",
+	"url": " https://rseng.github.io/software/repository/github/davidkipping/MAH",
+	"content": "Calculate the posterior distribution of the &#34;minimum atmospheric height&#34; (MAH) of an exoplanet by inputting the joint posterior distribution of the mass and radius."
 	},
-	"github/adrn/pyia": {
-	"id": "github/adrn/pyia",
-	"title": "github/adrn/pyia",
-	"url": " https://rseng.github.io/software/repository/github/adrn/pyia",
-	"content": "a Python package for working with data from the Gaia mission"
+	"github/davidkipping/inversebeta": {
+	"id": "github/davidkipping/inversebeta",
+	"title": "github/davidkipping/inversebeta",
+	"url": " https://rseng.github.io/software/repository/github/davidkipping/inversebeta",
+	"content": "Inverse transform sampler of the Beta distribution"
 	},
-	"github/adrn/schwimmbad": {
-	"id": "github/adrn/schwimmbad",
-	"title": "github/adrn/schwimmbad",
-	"url": " https://rseng.github.io/software/repository/github/adrn/schwimmbad",
-	"content": "A common interface to processing pools."
+	"github/davidkipping/LDC3": {
+	"id": "github/davidkipping/LDC3",
+	"title": "github/davidkipping/LDC3",
+	"url": " https://rseng.github.io/software/repository/github/davidkipping/LDC3",
+	"content": "None"
 	},
-	"github/aothmane-control/Algebraic-differentiators": {
-	"id": "github/aothmane-control/Algebraic-differentiators",
-	"title": "github/aothmane-control/Algebraic-differentiators",
-	"url": " https://rseng.github.io/software/repository/github/aothmane-control/Algebraic-differentiators",
-	"content": "A Python class implementing all necessary tools for the design, analysis, and discretization of algebraic differentiators. An interface to Matlab is also provided."
+	"github/davidkipping/MACULA": {
+	"id": "github/davidkipping/MACULA",
+	"title": "github/davidkipping/MACULA",
+	"url": " https://rseng.github.io/software/repository/github/davidkipping/MACULA",
+	"content": "None"
 	},
-	"github/BleekerLab/PhenoFeatureFinder": {
-	"id": "github/BleekerLab/PhenoFeatureFinder",
-	"title": "github/BleekerLab/PhenoFeatureFinder",
-	"url": " https://rseng.github.io/software/repository/github/BleekerLab/PhenoFeatureFinder",
-	"content": "A Python package dedicated to identifying plant metabolite features related to insect resistance"
+	"github/davidkipping/flicker": {
+	"id": "github/davidkipping/flicker",
+	"title": "github/davidkipping/flicker",
+	"url": " https://rseng.github.io/software/repository/github/davidkipping/flicker",
+	"content": "None"
 	},
-	"github/DRMacIver/shrinkray": {
-	"id": "github/DRMacIver/shrinkray",
-	"title": "github/DRMacIver/shrinkray",
-	"url": " https://rseng.github.io/software/repository/github/DRMacIver/shrinkray",
-	"content": "Shrink Ray is a new test-case reducer designed to be effective on a wide range of formats"
+	"github/asntech/intervene": {
+	"id": "github/asntech/intervene",
+	"title": "github/asntech/intervene",
+	"url": " https://rseng.github.io/software/repository/github/asntech/intervene",
+	"content": "Intervene: a tool for intersection and visualization of multiple genomic region and gene sets"
 	},
-	"github/PDB-REDO/cif-tools": {
-	"id": "github/PDB-REDO/cif-tools",
-	"title": "github/PDB-REDO/cif-tools",
-	"url": " https://rseng.github.io/software/repository/github/PDB-REDO/cif-tools",
-	"content": "A suite of programs to manipulate and examine mmCIF files"
+	"github/isakro/shoredate": {
+	"id": "github/isakro/shoredate",
+	"title": "github/isakro/shoredate",
+	"url": " https://rseng.github.io/software/repository/github/isakro/shoredate",
+	"content": "R package for shoreline dating coastal Stone Age sites"
 	},
-	"github/PDB-REDO/libcifpp": {
-	"id": "github/PDB-REDO/libcifpp",
-	"title": "github/PDB-REDO/libcifpp",
-	"url": " https://rseng.github.io/software/repository/github/PDB-REDO/libcifpp",
-	"content": "Library containing code to manipulate mmCIF and PDB files"
+	"github/michalychforever/CLASS-PT": {
+	"id": "github/michalychforever/CLASS-PT",
+	"title": "github/michalychforever/CLASS-PT",
+	"url": " https://rseng.github.io/software/repository/github/michalychforever/CLASS-PT",
+	"content": "Nonlinear perturbation theory extension of the Boltzmann code CLASS"
 	},
-	"github/PDB-REDO/libpdb-redo": {
-	"id": "github/PDB-REDO/libpdb-redo",
-	"title": "github/PDB-REDO/libpdb-redo",
-	"url": " https://rseng.github.io/software/repository/github/PDB-REDO/libpdb-redo",
-	"content": "Library containing shared code for various PDB-REDO programs"
+	"github/JGCRI/tethys": {
+	"id": "github/JGCRI/tethys",
+	"title": "github/JGCRI/tethys",
+	"url": " https://rseng.github.io/software/repository/github/JGCRI/tethys",
+	"content": "Spatiotemporal downscaling model for global water use"
 	},
-	"github/PDB-REDO/density-fitness": {
-	"id": "github/PDB-REDO/density-fitness",
-	"title": "github/PDB-REDO/density-fitness",
-	"url": " https://rseng.github.io/software/repository/github/PDB-REDO/density-fitness",
-	"content": "Application to calculate the density statistics (RSR, SRSR, RSCCS, EDIAm and OPIA)  for x-ray structures"
+	"github/JGCRI/rfasst": {
+	"id": "github/JGCRI/rfasst",
+	"title": "github/JGCRI/rfasst",
+	"url": " https://rseng.github.io/software/repository/github/JGCRI/rfasst",
+	"content": "Estimation of a consistent range of adverse health and agricultural effects attributable to air pollution for a GCAM scenario"
 	},
-	"github/PDB-REDO/dssp": {
-	"id": "github/PDB-REDO/dssp",
-	"title": "github/PDB-REDO/dssp",
-	"url": " https://rseng.github.io/software/repository/github/PDB-REDO/dssp",
-	"content": "Application to assign secondary structure to proteins"
+	"github/JGCRI/gcamfaostat": {
+	"id": "github/JGCRI/gcamfaostat",
+	"title": "github/JGCRI/gcamfaostat",
+	"url": " https://rseng.github.io/software/repository/github/JGCRI/gcamfaostat",
+	"content": "An R package to prepare, process, and synthesize FAOSTAT data for global agroeconomic and multisector dynamic modeling"
 	},
-	"github/PDB-REDO/tortoize": {
-	"id": "github/PDB-REDO/tortoize",
-	"title": "github/PDB-REDO/tortoize",
-	"url": " https://rseng.github.io/software/repository/github/PDB-REDO/tortoize",
-	"content": "Application to calculate ramachandran z-scores"
+	"github/JGCRI/plutus": {
+	"id": "github/JGCRI/plutus",
+	"title": "github/JGCRI/plutus",
+	"url": " https://rseng.github.io/software/repository/github/JGCRI/plutus",
+	"content": "None"
 	},
-	"github/cblearn/cblearn": {
-	"id": "github/cblearn/cblearn",
-	"title": "github/cblearn/cblearn",
-	"url": " https://rseng.github.io/software/repository/github/cblearn/cblearn",
-	"content": "Comparison-based Machine Learning in Python"
+	"github/JGCRI/ambrosia": {
+	"id": "github/JGCRI/ambrosia",
+	"title": "github/JGCRI/ambrosia",
+	"url": " https://rseng.github.io/software/repository/github/JGCRI/ambrosia",
+	"content": "An R package for calculating and analyzing food demand and in accordance with the Edmonds et al food demand model"
 	},
-	"github/bayzidlab/SAINT-Angle": {
-	"id": "github/bayzidlab/SAINT-Angle",
-	"title": "github/bayzidlab/SAINT-Angle",
-	"url": " https://rseng.github.io/software/repository/github/bayzidlab/SAINT-Angle",
-	"content": "This repository contains the official implementation of our paper titled SAINT-Angle: self-attention augmented inception-inside-inception network and transfer learning improve protein backbone torsion angles prediction."
+	"github/JGCRI/rmap": {
+	"id": "github/JGCRI/rmap",
+	"title": "github/JGCRI/rmap",
+	"url": " https://rseng.github.io/software/repository/github/JGCRI/rmap",
+	"content": "Mapping software with pre-loaded global and local maps"
 	},
-	"github/samtools/htslib": {
-	"id": "github/samtools/htslib",
-	"title": "github/samtools/htslib",
-	"url": " https://rseng.github.io/software/repository/github/samtools/htslib",
-	"content": "C library for high-throughput sequencing data formats"
+	"github/JGCRI/osiris": {
+	"id": "github/JGCRI/osiris",
+	"title": "github/JGCRI/osiris",
+	"url": " https://rseng.github.io/software/repository/github/JGCRI/osiris",
+	"content": "Processes climate impacts on agricultural yields for GCAM"
 	},
-	"github/samtools/bcftools": {
-	"id": "github/samtools/bcftools",
-	"title": "github/samtools/bcftools",
-	"url": " https://rseng.github.io/software/repository/github/samtools/bcftools",
-	"content": "This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html"
+	"github/JGCRI/stitches": {
+	"id": "github/JGCRI/stitches",
+	"title": "github/JGCRI/stitches",
+	"url": " https://rseng.github.io/software/repository/github/JGCRI/stitches",
+	"content": "Amalgamate existing climate data to create monthly climate variable fields."
 	},
-	"github/samtools/htsjdk": {
-	"id": "github/samtools/htsjdk",
-	"title": "github/samtools/htsjdk",
-	"url": " https://rseng.github.io/software/repository/github/samtools/htsjdk",
-	"content": "A Java API for high-throughput sequencing data (HTS) formats."
+	"github/GOMC-WSU/MoSDeF-dihedral-fit": {
+	"id": "github/GOMC-WSU/MoSDeF-dihedral-fit",
+	"title": "github/GOMC-WSU/MoSDeF-dihedral-fit",
+	"url": " https://rseng.github.io/software/repository/github/GOMC-WSU/MoSDeF-dihedral-fit",
+	"content": "MoSDeF-dihedral-fit: A simple software package to fit dihedrals via the MoSDeF software"
 	},
-	"github/samtools/samtools": {
-	"id": "github/samtools/samtools",
-	"title": "github/samtools/samtools",
-	"url": " https://rseng.github.io/software/repository/github/samtools/samtools",
-	"content": "Tools (written in C using htslib) for manipulating next-generation sequencing data"
+	"github/GOMC-WSU/GOMC": {
+	"id": "github/GOMC-WSU/GOMC",
+	"title": "github/GOMC-WSU/GOMC",
+	"url": " https://rseng.github.io/software/repository/github/GOMC-WSU/GOMC",
+	"content": "GOMC - GPU Optimized Monte Carlo is a parallel molecular simulation code designed for high-performance simulation of large systems"
 	},
-	"github/Keck-DataReductionPipelines/KcwiDRP": {
-	"id": "github/Keck-DataReductionPipelines/KcwiDRP",
-	"title": "github/Keck-DataReductionPipelines/KcwiDRP",
-	"url": " https://rseng.github.io/software/repository/github/Keck-DataReductionPipelines/KcwiDRP",
-	"content": "KCWI data reduction pipeline. Developers: Don Neill, Matt Matuszewski, Chris Martin (Caltech)"
+	"github/yupidevs/pactus": {
+	"id": "github/yupidevs/pactus",
+	"title": "github/yupidevs/pactus",
+	"url": " https://rseng.github.io/software/repository/github/yupidevs/pactus",
+	"content": "Framework to evaluate Trajectory Classification Algorithms"
 	},
-	"github/Keck-DataReductionPipelines/KCWI_DRP": {
-	"id": "github/Keck-DataReductionPipelines/KCWI_DRP",
-	"title": "github/Keck-DataReductionPipelines/KCWI_DRP",
-	"url": " https://rseng.github.io/software/repository/github/Keck-DataReductionPipelines/KCWI_DRP",
-	"content": "KCWI python DRP"
+	"github/dpryan79/pyBigWig": {
+	"id": "github/dpryan79/pyBigWig",
+	"title": "github/dpryan79/pyBigWig",
+	"url": " https://rseng.github.io/software/repository/github/dpryan79/pyBigWig",
+	"content": "A python extension for quick access to bigWig and bigBed files"
 	},
-	"github/cnsetzer/kilopop": {
-	"id": "github/cnsetzer/kilopop",
-	"title": "github/cnsetzer/kilopop",
-	"url": " https://rseng.github.io/software/repository/github/cnsetzer/kilopop",
-	"content": "Binary neutron star (BNS) population of optical kilonovae (kNe)."
+	"github/dpryan79/libBigWig": {
+	"id": "github/dpryan79/libBigWig",
+	"title": "github/dpryan79/libBigWig",
+	"url": " https://rseng.github.io/software/repository/github/dpryan79/libBigWig",
+	"content": "A C library for handling bigWig files"
 	},
-	"github/taranu/AllStarFit": {
-	"id": "github/taranu/AllStarFit",
-	"title": "github/taranu/AllStarFit",
-	"url": " https://rseng.github.io/software/repository/github/taranu/AllStarFit",
-	"content": "Experimental R package for source detection, PSF and multi-component galaxy fitting"
+	"github/dpryan79/MethylDackel": {
+	"id": "github/dpryan79/MethylDackel",
+	"title": "github/dpryan79/MethylDackel",
+	"url": " https://rseng.github.io/software/repository/github/dpryan79/MethylDackel",
+	"content": "A (mostly) universal methylation extractor for BS-seq experiments."
 	},
-	"github/ronshnapp/MyPTV": {
-	"id": "github/ronshnapp/MyPTV",
-	"title": "github/ronshnapp/MyPTV",
-	"url": " https://rseng.github.io/software/repository/github/ronshnapp/MyPTV",
-	"content": "MyPTV is an open source library designed for 3D particle Tracking (3D-PTV) measurements"
+	"github/maserlib/ExPRES": {
+	"id": "github/maserlib/ExPRES",
+	"title": "github/maserlib/ExPRES",
+	"url": " https://rseng.github.io/software/repository/github/maserlib/ExPRES",
+	"content": "Exoplanetary and Planetary Radio Emission Simulator"
 	},
-	"github/omboersma/deepglow": {
-	"id": "github/omboersma/deepglow",
-	"title": "github/omboersma/deepglow",
-	"url": " https://rseng.github.io/software/repository/github/omboersma/deepglow",
-	"content": "A neural network emulator for BOXFIT"
+	"github/kimpenn/VERSE": {
+	"id": "github/kimpenn/VERSE",
+	"title": "github/kimpenn/VERSE",
+	"url": " https://rseng.github.io/software/repository/github/kimpenn/VERSE",
+	"content": "A versatile and efficient RNA-Seq read counting tool"
 	},
-	"github/horovod/horovod": {
-	"id": "github/horovod/horovod",
-	"title": "github/horovod/horovod",
-	"url": " https://rseng.github.io/software/repository/github/horovod/horovod",
-	"content": "Distributed training framework for TensorFlow, Keras, PyTorch, and Apache MXNet."
+	"github/snek5000/snek5000": {
+	"id": "github/snek5000/snek5000",
+	"title": "github/snek5000/snek5000",
+	"url": " https://rseng.github.io/software/repository/github/snek5000/snek5000",
+	"content": ":snake: Python framework for Nek5000 :rocket:"
 	},
-	"github/calboo/TAWAS": {
-	"id": "github/calboo/TAWAS",
-	"title": "github/calboo/TAWAS",
-	"url": " https://rseng.github.io/software/repository/github/calboo/TAWAS",
-	"content": "TAWAS is an IDL script for solving the wave equation for torsional Alfvèn waves in a viscous plasma. The background magnetic field is axisymmetric and force-free with no azimuthal component and the plasma beta is assumed to be negligable. The solution is calculated using the analytical formula presented in https://academic.oup.com/mnras/article-abstract/510/2/1910/6449388?redirectedFrom=fulltext. "
+	"github/segasai/rvspecfit": {
+	"id": "github/segasai/rvspecfit",
+	"title": "github/segasai/rvspecfit",
+	"url": " https://rseng.github.io/software/repository/github/segasai/rvspecfit",
+	"content": "Radial velocity and stellar parameter fitting code for large surveys"
 	},
-	"github/calboo/Potential_Field_Calculator": {
-	"id": "github/calboo/Potential_Field_Calculator",
-	"title": "github/calboo/Potential_Field_Calculator",
-	"url": " https://rseng.github.io/software/repository/github/calboo/Potential_Field_Calculator",
-	"content": "A collection of codes for generating and visualising potential magnetic fields. If this numerical code is used, authors kindly request an acknowledgment via citation of paper https://www.aanda.org/articles/aa/full_html/2019/05/aa34684-18/aa34684-18.html"
+	"github/segasai/q3c": {
+	"id": "github/segasai/q3c",
+	"title": "github/segasai/q3c",
+	"url": " https://rseng.github.io/software/repository/github/segasai/q3c",
+	"content": "PostgreSQL extension for spatial indexing on a sphere"
 	},
-	"github/calboo/wigglewave": {
-	"id": "github/calboo/wigglewave",
-	"title": "github/calboo/wigglewave",
-	"url": " https://rseng.github.io/software/repository/github/calboo/wigglewave",
-	"content": "Wigglewave is a FORTRAN code that uses an RK4 finite difference method to solve the linearised governing equations for Torsional Alfvén Waves (TAWs) propagating in a plasma with negligible plasma beta and in a force-free axisymmetric magnetic field, with no azimuthal component, embedded in a high density divergent tube structure."
+	"github/fenderglass/Flye": {
+	"id": "github/fenderglass/Flye",
+	"title": "github/fenderglass/Flye",
+	"url": " https://rseng.github.io/software/repository/github/fenderglass/Flye",
+	"content": "De novo assembler for single molecule sequencing reads using repeat graphs"
 	},
-	"github/LeandroOrdonez/explora-vr-dash-client": {
-	"id": "github/LeandroOrdonez/explora-vr-dash-client",
-	"title": "github/LeandroOrdonez/explora-vr-dash-client",
-	"url": " https://rseng.github.io/software/repository/github/LeandroOrdonez/explora-vr-dash-client",
-	"content": "None"
+	"github/fenderglass/Ragout": {
+	"id": "github/fenderglass/Ragout",
+	"title": "github/fenderglass/Ragout",
+	"url": " https://rseng.github.io/software/repository/github/fenderglass/Ragout",
+	"content": "Chromosome-level scaffolding using multiple references"
 	},
-	"github/lantunes/cellpylib": {
-	"id": "github/lantunes/cellpylib",
-	"title": "github/lantunes/cellpylib",
-	"url": " https://rseng.github.io/software/repository/github/lantunes/cellpylib",
-	"content": "A library for working with Cellular Automata, for Python."
+	"github/dondi/GRNsight": {
+	"id": "github/dondi/GRNsight",
+	"title": "github/dondi/GRNsight",
+	"url": " https://rseng.github.io/software/repository/github/dondi/GRNsight",
+	"content": "Web app and service for modeling and visualizing gene regulatory networks."
 	},
-	"github/eelregit/pmwd": {
-	"id": "github/eelregit/pmwd",
-	"title": "github/eelregit/pmwd",
-	"url": " https://rseng.github.io/software/repository/github/eelregit/pmwd",
-	"content": "Differentiable Cosmological Forward Model"
+	"github/mscaudill/openseize": {
+	"id": "github/mscaudill/openseize",
+	"title": "github/mscaudill/openseize",
+	"url": " https://rseng.github.io/software/repository/github/mscaudill/openseize",
+	"content": "Digital Signal Processing for Big EEGs"
 	},
-	"github/eelregit/mcfit": {
-	"id": "github/eelregit/mcfit",
-	"title": "github/eelregit/mcfit",
-	"url": " https://rseng.github.io/software/repository/github/eelregit/mcfit",
-	"content": "multiplicatively convolutional fast integral transforms"
+	"github/RainthunderWYL/LoRD": {
+	"id": "github/RainthunderWYL/LoRD",
+	"title": "github/RainthunderWYL/LoRD",
+	"url": " https://rseng.github.io/software/repository/github/RainthunderWYL/LoRD",
+	"content": "Locate Reconnection Distribution"
 	},
-	"github/eelregit/covdisc": {
-	"id": "github/eelregit/covdisc",
-	"title": "github/eelregit/covdisc",
-	"url": " https://rseng.github.io/software/repository/github/eelregit/covdisc",
-	"content": "Disconnected covariance of 2-point functions in large-scale structure of the Universe"
+	"github/cogent3/cogent3": {
+	"id": "github/cogent3/cogent3",
+	"title": "github/cogent3/cogent3",
+	"url": " https://rseng.github.io/software/repository/github/cogent3/cogent3",
+	"content": "Comparative Genomics Toolkit 3"
 	},
-	"github/tardis-sn/tardis": {
-	"id": "github/tardis-sn/tardis",
-	"title": "github/tardis-sn/tardis",
-	"url": " https://rseng.github.io/software/repository/github/tardis-sn/tardis",
-	"content": "TARDIS - Temperature And Radiative Diffusion In Supernovae"
+	"github/phac-nml/biohansel": {
+	"id": "github/phac-nml/biohansel",
+	"title": "github/phac-nml/biohansel",
+	"url": " https://rseng.github.io/software/repository/github/phac-nml/biohansel",
+	"content": "subtype microbial whole-genome sequencing (WGS) data using SNV targeting k-mer subtyping schemes."
 	},
-	"github/tardis-sn/carsus": {
-	"id": "github/tardis-sn/carsus",
-	"title": "github/tardis-sn/carsus",
-	"url": " https://rseng.github.io/software/repository/github/tardis-sn/carsus",
-	"content": "Atomic Database for Astronomy"
+	"github/phac-nml/mob-suite": {
+	"id": "github/phac-nml/mob-suite",
+	"title": "github/phac-nml/mob-suite",
+	"url": " https://rseng.github.io/software/repository/github/phac-nml/mob-suite",
+	"content": "MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies"
 	},
-	"github/thomaspinder/GPJax": {
-	"id": "github/thomaspinder/GPJax",
-	"title": "github/thomaspinder/GPJax",
-	"url": " https://rseng.github.io/software/repository/github/thomaspinder/GPJax",
-	"content": "A didactic Gaussian process package for researchers in Jax."
+	"github/phac-nml/staramr": {
+	"id": "github/phac-nml/staramr",
+	"title": "github/phac-nml/staramr",
+	"url": " https://rseng.github.io/software/repository/github/phac-nml/staramr",
+	"content": "Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases."
 	},
-	"github/GabrielaCR/AGNfitter": {
-	"id": "github/GabrielaCR/AGNfitter",
-	"title": "github/GabrielaCR/AGNfitter",
-	"url": " https://rseng.github.io/software/repository/github/GabrielaCR/AGNfitter",
-	"content": "SED-fitting code for AGN and galaxies from a MCMC approach"
+	"github/lamyj/odil": {
+	"id": "github/lamyj/odil",
+	"title": "github/lamyj/odil",
+	"url": " https://rseng.github.io/software/repository/github/lamyj/odil",
+	"content": "Odil is a C++11 library for the DICOM standard"
 	},
-	"github/BioMeCIS-Lab/OpenOmics": {
-	"id": "github/BioMeCIS-Lab/OpenOmics",
-	"title": "github/BioMeCIS-Lab/OpenOmics",
-	"url": " https://rseng.github.io/software/repository/github/BioMeCIS-Lab/OpenOmics",
-	"content": "A bioinformatics API and web-app to integrate multi-omics datasets &amp; interface with public databases."
+	"github/nlesc-sherlock/emma": {
+	"id": "github/nlesc-sherlock/emma",
+	"title": "github/nlesc-sherlock/emma",
+	"url": " https://rseng.github.io/software/repository/github/nlesc-sherlock/emma",
+	"content": "Ansible playbook to create a cluster with GlusterFS, Docker, Spark and JupyterHub services"
 	},
-	"github/zhangxn1026/a-scheme-that-combines-Srun-job-submission-mode-Sbatch-job-submission-mode-and-Monitor-function-SSM-": {
-	"id": "github/zhangxn1026/a-scheme-that-combines-Srun-job-submission-mode-Sbatch-job-submission-mode-and-Monitor-function-SSM-",
-	"title": "github/zhangxn1026/a-scheme-that-combines-Srun-job-submission-mode-Sbatch-job-submission-mode-and-Monitor-function-SSM-",
-	"url": " https://rseng.github.io/software/repository/github/zhangxn1026/a-scheme-that-combines-Srun-job-submission-mode-Sbatch-job-submission-mode-and-Monitor-function-SSM-",
+	"github/nlesc-sherlock/Rig": {
+	"id": "github/nlesc-sherlock/Rig",
+	"title": "github/nlesc-sherlock/Rig",
+	"url": " https://rseng.github.io/software/repository/github/nlesc-sherlock/Rig",
 	"content": "None"
 	},
-	"github/nedtaylor/athena": {
-	"id": "github/nedtaylor/athena",
-	"title": "github/nedtaylor/athena",
-	"url": " https://rseng.github.io/software/repository/github/nedtaylor/athena",
-	"content": "A Fortran-based feed-forward neural network library. Whilst this library currently has a focus on 3D convolutional neural networks (CNNs), it can handle most standard hidden layer forms of neural networks, with the plan to integrate more."
+	"github/iancze/PSOAP": {
+	"id": "github/iancze/PSOAP",
+	"title": "github/iancze/PSOAP",
+	"url": " https://rseng.github.io/software/repository/github/iancze/PSOAP",
+	"content": "Tools for data-driven spectra models with Gaussian processes. Pronounced &#34;soap.&#34;"
 	},
-	"github/PRIS-CV/DS-UI": {
-	"id": "github/PRIS-CV/DS-UI",
-	"title": "github/PRIS-CV/DS-UI",
-	"url": " https://rseng.github.io/software/repository/github/PRIS-CV/DS-UI",
-	"content": "DS-UI: Dual-Supervised Mixture of Gaussian Mixture Models for Uncertainty Inference in Image Recognition (IEEE TIP 2021)"
+	"github/iancze/DiskJockey": {
+	"id": "github/iancze/DiskJockey",
+	"title": "github/iancze/DiskJockey",
+	"url": " https://rseng.github.io/software/repository/github/iancze/DiskJockey",
+	"content": "Protoplanetary Disk Modeling for Dynamical Mass Derivation"
 	},
-	"github/gui11aume/starcode": {
-	"id": "github/gui11aume/starcode",
-	"title": "github/gui11aume/starcode",
-	"url": " https://rseng.github.io/software/repository/github/gui11aume/starcode",
-	"content": "All pairs search and sequence clustering"
+	"github/GreycLab/gmic": {
+	"id": "github/GreycLab/gmic",
+	"title": "github/GreycLab/gmic",
+	"url": " https://rseng.github.io/software/repository/github/GreycLab/gmic",
+	"content": "GREYC&#39;s Magic for Image Computing: A Full-Featured Open-Source Framework for Image Processing"
 	},
-	"github/pylops/pyproximal": {
-	"id": "github/pylops/pyproximal",
-	"title": "github/pylops/pyproximal",
-	"url": " https://rseng.github.io/software/repository/github/pylops/pyproximal",
-	"content": "PyProximal – Proximal Operators and Algorithms in Python"
+	"github/asmusskar/ALVA": {
+	"id": "github/asmusskar/ALVA",
+	"title": "github/asmusskar/ALVA",
+	"url": " https://rseng.github.io/software/repository/github/asmusskar/ALVA",
+	"content": "ALVA is a MATLAB-package for advanced pavement modeling that is highly adaptive"
 	},
-	"github/getzlab/rnaseqc": {
-	"id": "github/getzlab/rnaseqc",
-	"title": "github/getzlab/rnaseqc",
-	"url": " https://rseng.github.io/software/repository/github/getzlab/rnaseqc",
-	"content": "Fast, efficient RNA-Seq metrics for quality control and process optimization"
+	"github/JulianBMunoz/RelicFast": {
+	"id": "github/JulianBMunoz/RelicFast",
+	"title": "github/JulianBMunoz/RelicFast",
+	"url": " https://rseng.github.io/software/repository/github/JulianBMunoz/RelicFast",
+	"content": "Code to find scale-dependent halo bias quickly and accurately"
 	},
-	"github/JFFleming/RCFV_Reader": {
-	"id": "github/JFFleming/RCFV_Reader",
-	"title": "github/JFFleming/RCFV_Reader",
-	"url": " https://rseng.github.io/software/repository/github/JFFleming/RCFV_Reader",
-	"content": "RCFV reader is a new software to quickly calculate normalised relative compositional frequency variability."
+	"github/JulianBMunoz/21cmvFAST": {
+	"id": "github/JulianBMunoz/21cmvFAST",
+	"title": "github/JulianBMunoz/21cmvFAST",
+	"url": " https://rseng.github.io/software/repository/github/JulianBMunoz/21cmvFAST",
+	"content": "Modified version of 21cmFAST including dark matter-baryon relative velocities."
 	},
-	"github/hnikaein/stark": {
-	"id": "github/hnikaein/stark",
-	"title": "github/hnikaein/stark",
-	"url": " https://rseng.github.io/software/repository/github/hnikaein/stark",
-	"content": "A tool for bluntifying a bidirected de bruijn graph by removing overlaps."
+	"github/JulianBMunoz/Zeus21": {
+	"id": "github/JulianBMunoz/Zeus21",
+	"title": "github/JulianBMunoz/Zeus21",
+	"url": " https://rseng.github.io/software/repository/github/JulianBMunoz/Zeus21",
+	"content": "Zeus21: Lightning-fast simulations of cosmic dawn"
 	},
-	"github/networkx/networkx": {
-	"id": "github/networkx/networkx",
-	"title": "github/networkx/networkx",
-	"url": " https://rseng.github.io/software/repository/github/networkx/networkx",
-	"content": "Network Analysis in Python"
+	"github/Ambuj-UF/APOP": {
+	"id": "github/Ambuj-UF/APOP",
+	"title": "github/Ambuj-UF/APOP",
+	"url": " https://rseng.github.io/software/repository/github/Ambuj-UF/APOP",
+	"content": "Allostery pocket prediction"
 	},
-	"github/online-ml/deep-river": {
-	"id": "github/online-ml/deep-river",
-	"title": "github/online-ml/deep-river",
-	"url": " https://rseng.github.io/software/repository/github/online-ml/deep-river",
+	"github/gkulkarni/QLF": {
+	"id": "github/gkulkarni/QLF",
+	"title": "github/gkulkarni/QLF",
+	"url": " https://rseng.github.io/software/repository/github/gkulkarni/QLF",
 	"content": "None"
 	},
-	"github/jordanflitter/21cmFirstCLASS": {
-	"id": "github/jordanflitter/21cmFirstCLASS",
-	"title": "github/jordanflitter/21cmFirstCLASS",
-	"url": " https://rseng.github.io/software/repository/github/jordanflitter/21cmFirstCLASS",
-	"content": "This is an extension of the popular 21cmFAST code that interfaces with CLASS to generate initial conditions at recombination that are consistent with the input cosmological model"
-	},
-	"github/JEFworks-Lab/STdeconvolve": {
-	"id": "github/JEFworks-Lab/STdeconvolve",
-	"title": "github/JEFworks-Lab/STdeconvolve",
-	"url": " https://rseng.github.io/software/repository/github/JEFworks-Lab/STdeconvolve",
-	"content": "Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data"
-	},
-	"github/Narayana-Rao/SAR-tools": {
-	"id": "github/Narayana-Rao/SAR-tools",
-	"title": "github/Narayana-Rao/SAR-tools",
-	"url": " https://rseng.github.io/software/repository/github/Narayana-Rao/SAR-tools",
-	"content": "A QGIS  plugin to generate  polarimetric SAR descriptors."
+	"github/flemingtonlab/SpliceV": {
+	"id": "github/flemingtonlab/SpliceV",
+	"title": "github/flemingtonlab/SpliceV",
+	"url": " https://rseng.github.io/software/repository/github/flemingtonlab/SpliceV",
+	"content": "Visualize coverage, canonical, and backsplice junctions."
 	},
-	"github/PixelgenTechnologies/pixelator": {
-	"id": "github/PixelgenTechnologies/pixelator",
-	"title": "github/PixelgenTechnologies/pixelator",
-	"url": " https://rseng.github.io/software/repository/github/PixelgenTechnologies/pixelator",
-	"content": "A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays."
+	"github/combustiontoolbox/combustion_toolbox": {
+	"id": "github/combustiontoolbox/combustion_toolbox",
+	"title": "github/combustiontoolbox/combustion_toolbox",
+	"url": " https://rseng.github.io/software/repository/github/combustiontoolbox/combustion_toolbox",
+	"content": "A MATLAB-GUI based open-source tool for solving gaseous combustion problems"
 	},
-	"github/YSOVAR/YSOVAR": {
-	"id": "github/YSOVAR/YSOVAR",
-	"title": "github/YSOVAR/YSOVAR",
-	"url": " https://rseng.github.io/software/repository/github/YSOVAR/YSOVAR",
-	"content": "Analyze YSOVAR lightcurves"
+	"github/Smith42/astroddpm": {
+	"id": "github/Smith42/astroddpm",
+	"title": "github/Smith42/astroddpm",
+	"url": " https://rseng.github.io/software/repository/github/Smith42/astroddpm",
+	"content": "A denoising diffusion probabilistic model synthesises galaxies that are qualitatively and physically indistinguishable from the real thing."
 	},
-	"github/hendr1km/dropout": {
-	"id": "github/hendr1km/dropout",
-	"title": "github/hendr1km/dropout",
-	"url": " https://rseng.github.io/software/repository/github/hendr1km/dropout",
-	"content": "tools for dropout analysis when working with survey data"
+	"github/Smith42/pix2prof": {
+	"id": "github/Smith42/pix2prof",
+	"title": "github/Smith42/pix2prof",
+	"url": " https://rseng.github.io/software/repository/github/Smith42/pix2prof",
+	"content": "Pix2Prof: extracting sequential galaxy data with a language model"
 	},
-	"github/chrisaberson/BetterReg": {
-	"id": "github/chrisaberson/BetterReg",
-	"title": "github/chrisaberson/BetterReg",
-	"url": " https://rseng.github.io/software/repository/github/chrisaberson/BetterReg",
-	"content": "Better statistics for regression (OLS and logistic)"
+	"github/Smith42/XDF-GAN": {
+	"id": "github/Smith42/XDF-GAN",
+	"title": "github/Smith42/XDF-GAN",
+	"url": " https://rseng.github.io/software/repository/github/Smith42/XDF-GAN",
+	"content": "A GAN for the generation of mock astronomical surveys"
 	},
-	"github/alesantuz/musclesyneRgies": {
-	"id": "github/alesantuz/musclesyneRgies",
-	"title": "github/alesantuz/musclesyneRgies",
-	"url": " https://rseng.github.io/software/repository/github/alesantuz/musclesyneRgies",
-	"content": "R package to extract muscle synergies from electromyogram"
+	"github/1313e/PRISM": {
+	"id": "github/1313e/PRISM",
+	"title": "github/1313e/PRISM",
+	"url": " https://rseng.github.io/software/repository/github/1313e/PRISM",
+	"content": "An alternative to MCMC for rapid analysis of models"
 	},
-	"github/WhaleConnect/whaleconnect": {
-	"id": "github/WhaleConnect/whaleconnect",
-	"title": "github/WhaleConnect/whaleconnect",
-	"url": " https://rseng.github.io/software/repository/github/WhaleConnect/whaleconnect",
-	"content": "Cross-platform network communication software"
+	"github/1313e/CMasher": {
+	"id": "github/1313e/CMasher",
+	"title": "github/1313e/CMasher",
+	"url": " https://rseng.github.io/software/repository/github/1313e/CMasher",
+	"content": "Scientific colormaps for making accessible, informative and &#39;cmashing&#39; plots"
 	},
-	"github/alan-turing-institute/setvis": {
-	"id": "github/alan-turing-institute/setvis",
-	"title": "github/alan-turing-institute/setvis",
-	"url": " https://rseng.github.io/software/repository/github/alan-turing-institute/setvis",
-	"content": "A tool for visualising set membership and patterns of missingness in data"
+	"github/BPSB/combine-p-values-discrete": {
+	"id": "github/BPSB/combine-p-values-discrete",
+	"title": "github/BPSB/combine-p-values-discrete",
+	"url": " https://rseng.github.io/software/repository/github/BPSB/combine-p-values-discrete",
+	"content": "None"
 	},
-	"github/alan-turing-institute/monitoring-ecosystem-resilience": {
-	"id": "github/alan-turing-institute/monitoring-ecosystem-resilience",
-	"title": "github/alan-turing-institute/monitoring-ecosystem-resilience",
-	"url": " https://rseng.github.io/software/repository/github/alan-turing-institute/monitoring-ecosystem-resilience",
-	"content": "Repository for mini-projects in the Data science for Sustainable development project "
+	"github/DrJCarson/BoundedCoalescent": {
+	"id": "github/DrJCarson/BoundedCoalescent",
+	"title": "github/DrJCarson/BoundedCoalescent",
+	"url": " https://rseng.github.io/software/repository/github/DrJCarson/BoundedCoalescent",
+	"content": "Sampling and likelihood estimation for the bounded coalescent"
 	},
-	"github/alan-turing-institute/DetectorChecker": {
-	"id": "github/alan-turing-institute/DetectorChecker",
-	"title": "github/alan-turing-institute/DetectorChecker",
-	"url": " https://rseng.github.io/software/repository/github/alan-turing-institute/DetectorChecker",
-	"content": " Project to develop software to assess developing detector screen damage (Web App based on the original DetectorChecker package)"
+	"github/kingyin3613/RingsPy": {
+	"id": "github/kingyin3613/RingsPy",
+	"title": "github/kingyin3613/RingsPy",
+	"url": " https://rseng.github.io/software/repository/github/kingyin3613/RingsPy",
+	"content": "A Python automated geometric generation tool that generates 3D meshes of prismatic cellular solids with radial growth rules based on Voronoi diagrams."
 	},
-	"github/alan-turing-institute/MLJ.jl": {
-	"id": "github/alan-turing-institute/MLJ.jl",
-	"title": "github/alan-turing-institute/MLJ.jl",
-	"url": " https://rseng.github.io/software/repository/github/alan-turing-institute/MLJ.jl",
-	"content": "A Julia machine learning framework"
+	"github/coleygroup/pyscreener": {
+	"id": "github/coleygroup/pyscreener",
+	"title": "github/coleygroup/pyscreener",
+	"url": " https://rseng.github.io/software/repository/github/coleygroup/pyscreener",
+	"content": "pythonic interface to virtual screening software"
 	},
-	"github/alan-turing-institute/Palaeoanalytics": {
-	"id": "github/alan-turing-institute/Palaeoanalytics",
-	"title": "github/alan-turing-institute/Palaeoanalytics",
-	"url": " https://rseng.github.io/software/repository/github/alan-turing-institute/Palaeoanalytics",
-	"content": "Repository for the Paleoanalytics project."
+	"github/FabianPlum/OmniTrax": {
+	"id": "github/FabianPlum/OmniTrax",
+	"title": "github/FabianPlum/OmniTrax",
+	"url": " https://rseng.github.io/software/repository/github/FabianPlum/OmniTrax",
+	"content": "Deep learning-driven multi animal tracking and pose estimation add-on for Blender"
 	},
-	"github/vembrane/vembrane": {
-	"id": "github/vembrane/vembrane",
-	"title": "github/vembrane/vembrane",
-	"url": " https://rseng.github.io/software/repository/github/vembrane/vembrane",
-	"content": "vembrane filters VCF records using python expressions"
+	"github/jorgensd/adios4dolfinx": {
+	"id": "github/jorgensd/adios4dolfinx",
+	"title": "github/jorgensd/adios4dolfinx",
+	"url": " https://rseng.github.io/software/repository/github/jorgensd/adios4dolfinx",
+	"content": "Extending DOLFINx with checkpointing functionality"
 	},
-	"github/EnsembleGovServices/kamodo-core": {
-	"id": "github/EnsembleGovServices/kamodo-core",
-	"title": "github/EnsembleGovServices/kamodo-core",
-	"url": " https://rseng.github.io/software/repository/github/EnsembleGovServices/kamodo-core",
-	"content": "A functional API for space weather models and data"
+	"github/fpavogt/fcmaker": {
+	"id": "github/fpavogt/fcmaker",
+	"title": "github/fpavogt/fcmaker",
+	"url": " https://rseng.github.io/software/repository/github/fpavogt/fcmaker",
+	"content": "An automated finding-chart-making program for Observing Blocks on p2."
 	},
-	"github/pmkruyen/dearscholar": {
-	"id": "github/pmkruyen/dearscholar",
-	"title": "github/pmkruyen/dearscholar",
-	"url": " https://rseng.github.io/software/repository/github/pmkruyen/dearscholar",
-	"content": "DearScholar: An open-source smartphone app for longitudinal scientific qualitative and quantitative (self-report) diary, log and survey research"
+	"github/fpavogt/E0102-VR": {
+	"id": "github/fpavogt/E0102-VR",
+	"title": "github/fpavogt/E0102-VR",
+	"url": " https://rseng.github.io/software/repository/github/fpavogt/E0102-VR",
+	"content": "An experimental VR application to visualize the 3D map of the oxygen-bright ejecta in SNR 1E 0102.2-7219"
 	},
-	"github/spacetx/starfish": {
-	"id": "github/spacetx/starfish",
-	"title": "github/spacetx/starfish",
-	"url": " https://rseng.github.io/software/repository/github/spacetx/starfish",
-	"content": "starfish: unified pipelines for image-based transcriptomics"
+	"github/xianggebenben/GraphSL": {
+	"id": "github/xianggebenben/GraphSL",
+	"title": "github/xianggebenben/GraphSL",
+	"url": " https://rseng.github.io/software/repository/github/xianggebenben/GraphSL",
+	"content": "Graph Source Localization Library"
 	},
-	"github/PyTables/PyTables": {
-	"id": "github/PyTables/PyTables",
-	"title": "github/PyTables/PyTables",
-	"url": " https://rseng.github.io/software/repository/github/PyTables/PyTables",
-	"content": "A Python package to manage extremely large amounts of data"
+	"github/pratheesh3780/grapesAgri1": {
+	"id": "github/pratheesh3780/grapesAgri1",
+	"title": "github/pratheesh3780/grapesAgri1",
+	"url": " https://rseng.github.io/software/repository/github/pratheesh3780/grapesAgri1",
+	"content": "Collection of shiny apps for Agricultural research Data Analysis. Allows user to have graphical user interface to perform analysis of Agricultural experimental data. On using the functions in this package a Graphical User Interface will pop up. Apps Works by simple upload of files in CSV format."
 	},
-	"github/liamedeiros/ehtplot": {
-	"id": "github/liamedeiros/ehtplot",
-	"title": "github/liamedeiros/ehtplot",
-	"url": " https://rseng.github.io/software/repository/github/liamedeiros/ehtplot",
-	"content": "Plotting functions for the Event Horizon Telescope"
+	"github/isovic/graphmap": {
+	"id": "github/isovic/graphmap",
+	"title": "github/isovic/graphmap",
+	"url": " https://rseng.github.io/software/repository/github/isovic/graphmap",
+	"content": "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:"
 	},
-	"github/dtcc-platform/dtcc-builder": {
-	"id": "github/dtcc-platform/dtcc-builder",
-	"title": "github/dtcc-platform/dtcc-builder",
-	"url": " https://rseng.github.io/software/repository/github/dtcc-platform/dtcc-builder",
-	"content": "None"
+	"github/me-manu/gammaALPs": {
+	"id": "github/me-manu/gammaALPs",
+	"title": "github/me-manu/gammaALPs",
+	"url": " https://rseng.github.io/software/repository/github/me-manu/gammaALPs",
+	"content": "A python code to calculate the conversion probability between photons and axions / axionlike particles"
 	},
-	"github/napakalas/casbert": {
-	"id": "github/napakalas/casbert",
-	"title": "github/napakalas/casbert",
-	"url": " https://rseng.github.io/software/repository/github/napakalas/casbert",
+	"github/orbisgis/lczexplore": {
+	"id": "github/orbisgis/lczexplore",
+	"title": "github/orbisgis/lczexplore",
+	"url": " https://rseng.github.io/software/repository/github/orbisgis/lczexplore",
 	"content": "None"
 	},
-	"github/amueller/word_cloud": {
-	"id": "github/amueller/word_cloud",
-	"title": "github/amueller/word_cloud",
-	"url": " https://rseng.github.io/software/repository/github/amueller/word_cloud",
-	"content": "A little word cloud generator in Python"
+	"github/adithirgis/pollucheck": {
+	"id": "github/adithirgis/pollucheck",
+	"title": "github/adithirgis/pollucheck",
+	"url": " https://rseng.github.io/software/repository/github/adithirgis/pollucheck",
+	"content": "This application helps exploring the open source air quality data."
 	},
-	"github/dgerosa/spops": {
-	"id": "github/dgerosa/spops",
-	"title": "github/dgerosa/spops",
-	"url": " https://rseng.github.io/software/repository/github/dgerosa/spops",
-	"content": "Spinning black-hole binary POPulation Synthesis"
+	"github/VBlesius/RHRT": {
+	"id": "github/VBlesius/RHRT",
+	"title": "github/VBlesius/RHRT",
+	"url": " https://rseng.github.io/software/repository/github/VBlesius/RHRT",
+	"content": "R package to assess Heart Rate Turbulence from RR interval data"
 	},
-	"github/dgerosa/surrkick": {
-	"id": "github/dgerosa/surrkick",
-	"title": "github/dgerosa/surrkick",
-	"url": " https://rseng.github.io/software/repository/github/dgerosa/surrkick",
-	"content": "Black-hole kicks from numerical-relativity surrogate models"
+	"github/Qile0317/APackOfTheClones": {
+	"id": "github/Qile0317/APackOfTheClones",
+	"title": "github/Qile0317/APackOfTheClones",
+	"url": " https://rseng.github.io/software/repository/github/Qile0317/APackOfTheClones",
+	"content": "Visualize clonal expansion via circle-packing. &#39;APackOfTheClones&#39; extends &#39;scRepertoire&#39; to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles."
 	},
-	"github/dgerosa/gwdet": {
-	"id": "github/dgerosa/gwdet",
-	"title": "github/dgerosa/gwdet",
-	"url": " https://rseng.github.io/software/repository/github/dgerosa/gwdet",
-	"content": "Detectability of gravitational-wave signals from compact binary coalescences"
+	"github/McMahonCosmologyGroup/holosim-ml": {
+	"id": "github/McMahonCosmologyGroup/holosim-ml",
+	"title": "github/McMahonCosmologyGroup/holosim-ml",
+	"url": " https://rseng.github.io/software/repository/github/McMahonCosmologyGroup/holosim-ml",
+	"content": "machine learning applied to the efficient analysis of radio holography measurements of complex optical systems"
 	},
-	"github/s4hts/HTStream": {
-	"id": "github/s4hts/HTStream",
-	"title": "github/s4hts/HTStream",
-	"url": " https://rseng.github.io/software/repository/github/s4hts/HTStream",
-	"content": "A high throughput sequence read  toolset using a streaming approach facilitated by Linux pipes"
+	"github/leirufeng/iEnhancer-DCSV": {
+	"id": "github/leirufeng/iEnhancer-DCSV",
+	"title": "github/leirufeng/iEnhancer-DCSV",
+	"url": " https://rseng.github.io/software/repository/github/leirufeng/iEnhancer-DCSV",
+	"content": "None"
 	},
-	"github/jorgensd/adios4dolfinx": {
-	"id": "github/jorgensd/adios4dolfinx",
-	"title": "github/jorgensd/adios4dolfinx",
-	"url": " https://rseng.github.io/software/repository/github/jorgensd/adios4dolfinx",
-	"content": "Extending DOLFINx with checkpointing functionality"
+	"github/AlexMikes/AutoFunc": {
+	"id": "github/AlexMikes/AutoFunc",
+	"title": "github/AlexMikes/AutoFunc",
+	"url": " https://rseng.github.io/software/repository/github/AlexMikes/AutoFunc",
+	"content": "Data Mining for Automated Functional Representations"
 	},
-	"github/votca/xtp": {
-	"id": "github/votca/xtp",
-	"title": "github/votca/xtp",
-	"url": " https://rseng.github.io/software/repository/github/votca/xtp",
-	"content": "GW-BSE for excited state Quantum Chemistry in a Gaussian Orbital basis, electronic spectroscopy with QM/MM, charge and energy dynamics in complex molecular systems"
+	"github/grimme-lab/xtb": {
+	"id": "github/grimme-lab/xtb",
+	"title": "github/grimme-lab/xtb",
+	"url": " https://rseng.github.io/software/repository/github/grimme-lab/xtb",
+	"content": "Semiempirical Extended Tight-Binding Program Package"
 	},
-	"github/laristra/flecsph": {
-	"id": "github/laristra/flecsph",
-	"title": "github/laristra/flecsph",
-	"url": " https://rseng.github.io/software/repository/github/laristra/flecsph",
-	"content": "A Parallel and Distributed SPH Implementation Based on the FleCSI"
+	"github/MichielsenM/FOAM": {
+	"id": "github/MichielsenM/FOAM",
+	"title": "github/MichielsenM/FOAM",
+	"url": " https://rseng.github.io/software/repository/github/MichielsenM/FOAM",
+	"content": "A Python package for forward asteroseismic modelling of gravity modes"
 	},
-	"github/mwanakijiji/rrlfe": {
-	"id": "github/mwanakijiji/rrlfe",
-	"title": "github/mwanakijiji/rrlfe",
-	"url": " https://rseng.github.io/software/repository/github/mwanakijiji/rrlfe",
-	"content": "None"
+	"github/mkenworthy/exorings": {
+	"id": "github/mkenworthy/exorings",
+	"title": "github/mkenworthy/exorings",
+	"url": " https://rseng.github.io/software/repository/github/mkenworthy/exorings",
+	"content": "Tools for fitting and displaying giant extrasolar planet ring systems."
 	},
-	"github/Cadaei-Yuvxvs/OSHy-X": {
-	"id": "github/Cadaei-Yuvxvs/OSHy-X",
-	"title": "github/Cadaei-Yuvxvs/OSHy-X",
-	"url": " https://rseng.github.io/software/repository/github/Cadaei-Yuvxvs/OSHy-X",
-	"content": "Open Source Hypothalamic Atlas and Segmentation for 3T and 7T"
+	"github/brandon-rhodes/python-jplephem": {
+	"id": "github/brandon-rhodes/python-jplephem",
+	"title": "github/brandon-rhodes/python-jplephem",
+	"url": " https://rseng.github.io/software/repository/github/brandon-rhodes/python-jplephem",
+	"content": "Python version of NASA DE4xx ephemerides, the basis for the Astronomical Alamanac"
 	},
-	"github/astropy/astroplan": {
-	"id": "github/astropy/astroplan",
-	"title": "github/astropy/astroplan",
-	"url": " https://rseng.github.io/software/repository/github/astropy/astroplan",
-	"content": "Observation planning package for astronomers"
+	"github/johannesulf/dsigma": {
+	"id": "github/johannesulf/dsigma",
+	"title": "github/johannesulf/dsigma",
+	"url": " https://rseng.github.io/software/repository/github/johannesulf/dsigma",
+	"content": "A Galaxy-Galaxy Lensing Python Package"
 	},
-	"github/astropy/specutils": {
-	"id": "github/astropy/specutils",
-	"title": "github/astropy/specutils",
-	"url": " https://rseng.github.io/software/repository/github/astropy/specutils",
-	"content": "An Astropy coordinated package for astronomical spectroscopy.  Maintainers: @nmearl @rosteen @keflavich @eteq"
+	"github/ericfell/rfbzero": {
+	"id": "github/ericfell/rfbzero",
+	"title": "github/ericfell/rfbzero",
+	"url": " https://rseng.github.io/software/repository/github/ericfell/rfbzero",
+	"content": "Redox flow battery electrochemical cycling models in Python"
 	},
-	"github/astropy/ccdproc": {
-	"id": "github/astropy/ccdproc",
-	"title": "github/astropy/ccdproc",
-	"url": " https://rseng.github.io/software/repository/github/astropy/ccdproc",
-	"content": "Astropy affiliated package for reducing optical/IR CCD data"
+	"github/ArenA-Crowds/Crowds": {
+	"id": "github/ArenA-Crowds/Crowds",
+	"title": "github/ArenA-Crowds/Crowds",
+	"url": " https://rseng.github.io/software/repository/github/ArenA-Crowds/Crowds",
+	"content": "Jupyter python notebooks related to the ArenA project"
 	},
-	"github/astropy/astroquery": {
-	"id": "github/astropy/astroquery",
-	"title": "github/astropy/astroquery",
-	"url": " https://rseng.github.io/software/repository/github/astropy/astroquery",
-	"content": "Functions and classes to access online data resources. Maintainers: @keflavich and @bsipocz and @ceb8"
+	"github/casaluca/bolometric-corrections": {
+	"id": "github/casaluca/bolometric-corrections",
+	"title": "github/casaluca/bolometric-corrections",
+	"url": " https://rseng.github.io/software/repository/github/casaluca/bolometric-corrections",
+	"content": "compute bolometric corrections and synthetic colours for input values of stellar parameters"
 	},
-	"github/astropy/SPISEA": {
-	"id": "github/astropy/SPISEA",
-	"title": "github/astropy/SPISEA",
-	"url": " https://rseng.github.io/software/repository/github/astropy/SPISEA",
-	"content": "Stellar Population Synthesis Modeling"
+	"github/KALMUS-Color-Toolkit/KALMUS": {
+	"id": "github/KALMUS-Color-Toolkit/KALMUS",
+	"title": "github/KALMUS-Color-Toolkit/KALMUS",
+	"url": " https://rseng.github.io/software/repository/github/KALMUS-Color-Toolkit/KALMUS",
+	"content": "KALMUS Color Toolkit for color analysis and visualization in film studies."
 	},
-	"github/astropy/halotools": {
-	"id": "github/astropy/halotools",
-	"title": "github/astropy/halotools",
-	"url": " https://rseng.github.io/software/repository/github/astropy/halotools",
-	"content": "Python package for studying large scale structure, cosmology, and galaxy evolution using N-body simulations and halo models"
+	"github/OBrink/RanDepict": {
+	"id": "github/OBrink/RanDepict",
+	"title": "github/OBrink/RanDepict",
+	"url": " https://rseng.github.io/software/repository/github/OBrink/RanDepict",
+	"content": "This repository contains RanDepict, an easy-to-use utility to generate a big variety of chemical structure depictions (random depiction styles and image augmentations) based on RDKit, CDK, Indigo and PIKAChU."
 	},
-	"github/astropy/astroscrappy": {
-	"id": "github/astropy/astroscrappy",
-	"title": "github/astropy/astroscrappy",
-	"url": " https://rseng.github.io/software/repository/github/astropy/astroscrappy",
-	"content": "Speedy Cosmic Ray Annihilation Package in Python"
+	"gitlab/sybreton/apollinaire": {
+	"id": "gitlab/sybreton/apollinaire",
+	"title": "gitlab/sybreton/apollinaire",
+	"url": " https://rseng.github.io/software/repository/gitlab/sybreton/apollinaire",
+	"content": "Python tools for helio- and asteroseismic peakbagging frameworks."
 	},
-	"github/astropy/astropy": {
-	"id": "github/astropy/astropy",
-	"title": "github/astropy/astropy",
-	"url": " https://rseng.github.io/software/repository/github/astropy/astropy",
-	"content": "Repository for the Astropy core package"
+	"gitlab/robizzard/libcdict": {
+	"id": "gitlab/robizzard/libcdict",
+	"title": "gitlab/robizzard/libcdict",
+	"url": " https://rseng.github.io/software/repository/gitlab/robizzard/libcdict",
+	"content": "A generic associative array, also know as dictionary or hash, library in C, based on uthash and extended to be more user friendly and include integration features such as JSON output."
 	},
-	"github/statdivlab/rigr": {
-	"id": "github/statdivlab/rigr",
-	"title": "github/statdivlab/rigr",
-	"url": " https://rseng.github.io/software/repository/github/statdivlab/rigr",
-	"content": "Regression, Inference, and General Data Analysis Tools for R "
+	"gitlab/jesseds/apav": {
+	"id": "gitlab/jesseds/apav",
+	"title": "gitlab/jesseds/apav",
+	"url": " https://rseng.github.io/software/repository/gitlab/jesseds/apav",
+	"content": "APAV (Atom Probe Analysis and Visualization) is a Python library for the analysis and
+visualization of atom probe tomography experiments."
 	},
-	"github/wiederm/transformato": {
-	"id": "github/wiederm/transformato",
-	"title": "github/wiederm/transformato",
-	"url": " https://rseng.github.io/software/repository/github/wiederm/transformato",
-	"content": "Set up relative free energy calculations using a common scaffold"
+	"gitlab/chiemotono/mdcontactcom": {
+	"id": "gitlab/chiemotono/mdcontactcom",
+	"title": "gitlab/chiemotono/mdcontactcom",
+	"url": " https://rseng.github.io/software/repository/gitlab/chiemotono/mdcontactcom",
+	"content": ""
 	},
-	"github/neherlab/nextalign": {
-	"id": "github/neherlab/nextalign",
-	"title": "github/neherlab/nextalign",
-	"url": " https://rseng.github.io/software/repository/github/neherlab/nextalign",
-	"content": "🧬 Viral genome reference alignment"
+	"gitlab/vibes-developers/vibes": {
+	"id": "gitlab/vibes-developers/vibes",
+	"title": "gitlab/vibes-developers/vibes",
+	"url": " https://rseng.github.io/software/repository/gitlab/vibes-developers/vibes",
+	"content": "[FHI-vibes](https://vibes-developers.gitlab.io/vibes/): Vibrational simulations with python powered by ASE and FHI-aims."
 	},
-	"github/mildpiggy/DEP2": {
-	"id": "github/mildpiggy/DEP2",
-	"title": "github/mildpiggy/DEP2",
-	"url": " https://rseng.github.io/software/repository/github/mildpiggy/DEP2",
-	"content": "An r package for proteomics data Analysis, developed from DEP."
+	"gitlab/gpagano/lensinggw": {
+	"id": "gitlab/gpagano/lensinggw",
+	"title": "gitlab/gpagano/lensinggw",
+	"url": " https://rseng.github.io/software/repository/gitlab/gpagano/lensinggw",
+	"content": "None"
 	},
-	"github/gtonkinhill/fastbaps": {
-	"id": "github/gtonkinhill/fastbaps",
-	"title": "github/gtonkinhill/fastbaps",
-	"url": " https://rseng.github.io/software/repository/github/gtonkinhill/fastbaps",
-	"content": "A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data"
+	"gitlab/vda-lab/snowflake": {
+	"id": "gitlab/vda-lab/snowflake",
+	"title": "gitlab/vda-lab/snowflake",
+	"url": " https://rseng.github.io/software/repository/gitlab/vda-lab/snowflake",
+	"content": "None"
 	},
-	"github/mostanes/umbrella2": {
-	"id": "github/mostanes/umbrella2",
-	"title": "github/mostanes/umbrella2",
-	"url": " https://rseng.github.io/software/repository/github/mostanes/umbrella2",
-	"content": "Highly modular open-source asteroid detection library written under dotnet."
+	"gitlab/mcfrith/paraclu": {
+	"id": "gitlab/mcfrith/paraclu",
+	"title": "gitlab/mcfrith/paraclu",
+	"url": " https://rseng.github.io/software/repository/gitlab/mcfrith/paraclu",
+	"content": "Parametric clustering of genomic and transcriptomic features"
 	},
-	"github/pcubillos/rate": {
-	"id": "github/pcubillos/rate",
-	"title": "github/pcubillos/rate",
-	"url": " https://rseng.github.io/software/repository/github/pcubillos/rate",
-	"content": "Reliable Analytic Thermochemical Equilibrium"
+	"gitlab/mcfrith/last": {
+	"id": "gitlab/mcfrith/last",
+	"title": "gitlab/mcfrith/last",
+	"url": " https://rseng.github.io/software/repository/gitlab/mcfrith/last",
+	"content": "finds &amp; aligns related regions of sequences. LAST is designed for moderately large data (e.g. genomes, DNA reads, proteomes)."
 	},
-	"github/pcubillos/repack": {
-	"id": "github/pcubillos/repack",
-	"title": "github/pcubillos/repack",
-	"url": " https://rseng.github.io/software/repository/github/pcubillos/repack",
-	"content": "Repack and compress line-transition data"
+	"gitlab/mcfrith/tantan": {
+	"id": "gitlab/mcfrith/tantan",
+	"title": "gitlab/mcfrith/tantan",
+	"url": " https://rseng.github.io/software/repository/gitlab/mcfrith/tantan",
+	"content": "low complexity and tandem repeat masker for biosequences"
 	},
-	"github/pcubillos/pyratbay": {
-	"id": "github/pcubillos/pyratbay",
-	"title": "github/pcubillos/pyratbay",
-	"url": " https://rseng.github.io/software/repository/github/pcubillos/pyratbay",
-	"content": "Python Radiative Transfer in a Bayesian Framework"
+	"gitlab/mcfrith/lamassemble": {
+	"id": "gitlab/mcfrith/lamassemble",
+	"title": "gitlab/mcfrith/lamassemble",
+	"url": " https://rseng.github.io/software/repository/gitlab/mcfrith/lamassemble",
+	"content": "Merges overlapping &#34;long&#34; DNA reads into a consensus sequences"
 	},
-	"github/pcubillos/mc3": {
-	"id": "github/pcubillos/mc3",
-	"title": "github/pcubillos/mc3",
-	"url": " https://rseng.github.io/software/repository/github/pcubillos/mc3",
-	"content": "Python MCMC Sampler"
+	"gitlab/programgreg/tagginglatencyestimator": {
+	"id": "gitlab/programgreg/tagginglatencyestimator",
+	"title": "gitlab/programgreg/tagginglatencyestimator",
+	"url": " https://rseng.github.io/software/repository/gitlab/programgreg/tagginglatencyestimator",
+	"content": "Software to estimate the latency of the tagging process."
 	},
-	"github/signalling-games-org/evoke": {
-	"id": "github/signalling-games-org/evoke",
-	"title": "github/signalling-games-org/evoke",
-	"url": " https://rseng.github.io/software/repository/github/signalling-games-org/evoke",
-	"content": "A Python package for evolutionary signalling games"
+	"gitlab/clairedavies/sedbys": {
+	"id": "gitlab/clairedavies/sedbys",
+	"title": "gitlab/clairedavies/sedbys",
+	"url": " https://rseng.github.io/software/repository/gitlab/clairedavies/sedbys",
+	"content": "A python-based spectral energy distribution builder for young stars"
 	},
-	"github/Eventdisplay/Eventdisplay": {
-	"id": "github/Eventdisplay/Eventdisplay",
-	"title": "github/Eventdisplay/Eventdisplay",
-	"url": " https://rseng.github.io/software/repository/github/Eventdisplay/Eventdisplay",
-	"content": "A reconstruction and analysis pipeline for ground-based imaging atmospheric Cherenkov Telescopes"
+	"gitlab/pipe3d/pyPipe3D": {
+	"id": "gitlab/pipe3d/pyPipe3D",
+	"title": "gitlab/pipe3d/pyPipe3D",
+	"url": " https://rseng.github.io/software/repository/gitlab/pipe3d/pyPipe3D",
+	"content": "pyPipe3D is a spectroscopy analysis pipeline which produces coherent, easy to distribute and compare, parameters of the stellar populations and the ionized gas, suited in particular for data from the most recent optical IFS surveys."
 	},
-	"github/NKI-AI/direct": {
-	"id": "github/NKI-AI/direct",
-	"title": "github/NKI-AI/direct",
-	"url": " https://rseng.github.io/software/repository/github/NKI-AI/direct",
-	"content": "Deep learning framework for MRI reconstruction"
+	"gitlab/gims-developers/gims": {
+	"id": "gitlab/gims-developers/gims",
+	"title": "gitlab/gims-developers/gims",
+	"url": " https://rseng.github.io/software/repository/gitlab/gims-developers/gims",
+	"content": "GIMS -- Graphical Interface for Materials Simulations --  is an open-source, browser-based toolbox for electronic structure codes. Try it here: [gims.ms1p.org](https://gims.ms1p.org)"
 	},
-	"github/cran/irtplay": {
-	"id": "github/cran/irtplay",
-	"title": "github/cran/irtplay",
-	"url": " https://rseng.github.io/software/repository/github/cran/irtplay",
-	"content": ":exclamation: This is a read-only mirror of the CRAN R package repository.  irtplay — Unidimensional Item Response Theory Modeling. Homepage: https://github.com/hwangQ/irtplay  Report bugs for this package: https://github.com/hwangQ/irtplay/issues"
+	"gitlab/ostrokach/proteinsolver": {
+	"id": "gitlab/ostrokach/proteinsolver",
+	"title": "gitlab/ostrokach/proteinsolver",
+	"url": " https://rseng.github.io/software/repository/gitlab/ostrokach/proteinsolver",
+	"content": "Graph neural network capable of generating novel amino acid sequences that fold into proteins with predetermined topologies.
+
+"
 	},
-	"github/agshumate/LiftoffTools": {
-	"id": "github/agshumate/LiftoffTools",
-	"title": "github/agshumate/LiftoffTools",
-	"url": " https://rseng.github.io/software/repository/github/agshumate/LiftoffTools",
-	"content": "is a toolkit to compare genes lifted between genome assemblies."
+	"gitlab/metafundev/metafun": {
+	"id": "gitlab/metafundev/metafun",
+	"title": "gitlab/metafundev/metafun",
+	"url": " https://rseng.github.io/software/repository/gitlab/metafundev/metafun",
+	"content": ""
 	},
-	"github/mchalela/GriSPy": {
-	"id": "github/mchalela/GriSPy",
-	"title": "github/mchalela/GriSPy",
-	"url": " https://rseng.github.io/software/repository/github/mchalela/GriSPy",
-	"content": "GriSPy is a regular grid search algorithm for quick nearest-neighbor lookup."
+	"gitlab/qc-devs/aqcnes": {
+	"id": "gitlab/qc-devs/aqcnes",
+	"title": "gitlab/qc-devs/aqcnes",
+	"url": " https://rseng.github.io/software/repository/gitlab/qc-devs/aqcnes",
+	"content": "Mirror of https://gitlab.ethz.ch/mechanics-and-materials/aqcnes/"
 	},
-	"github/flekschas/regl-scatterplot": {
-	"id": "github/flekschas/regl-scatterplot",
-	"title": "github/flekschas/regl-scatterplot",
-	"url": " https://rseng.github.io/software/repository/github/flekschas/regl-scatterplot",
-	"content": "Scalable WebGL-based scatter plot library build with Regl"
+	"gitlab/jerrytheo16/exoplanet": {
+	"id": "gitlab/jerrytheo16/exoplanet",
+	"title": "gitlab/jerrytheo16/exoplanet",
+	"url": " https://rseng.github.io/software/repository/gitlab/jerrytheo16/exoplanet",
+	"content": "Desktop-based application to aid in constructing a machine learning model for predictive analysis. The application further allows the model to be evaluated through statistical results and interactive graphs."
 	},
-	"github/flekschas/jupyter-scatter": {
-	"id": "github/flekschas/jupyter-scatter",
-	"title": "github/flekschas/jupyter-scatter",
-	"url": " https://rseng.github.io/software/repository/github/flekschas/jupyter-scatter",
-	"content": "Interactive 2D scatter plot widget for Jupyter Lab and Notebook. Scales to millions of points!"
+	"gitlab/eduardo-vitral/balrogo": {
+	"id": "gitlab/eduardo-vitral/balrogo",
+	"title": "gitlab/eduardo-vitral/balrogo",
+	"url": " https://rseng.github.io/software/repository/gitlab/eduardo-vitral/balrogo",
+	"content": "Bayesian Astrometric Likelihood Recovery of Galactic Objects"
 	},
-	"github/debian-tex/texlive-nonbin": {
-	"id": "github/debian-tex/texlive-nonbin",
-	"title": "github/debian-tex/texlive-nonbin",
-	"url": " https://rseng.github.io/software/repository/github/debian-tex/texlive-nonbin",
-	"content": "debian non-bin texlive pkgs"
+	"gitlab/cosapp/cosapp": {
+	"id": "gitlab/cosapp/cosapp",
+	"title": "gitlab/cosapp/cosapp",
+	"url": " https://rseng.github.io/software/repository/gitlab/cosapp/cosapp",
+	"content": "CoSApp core package"
 	},
-	"github/debian-tex/biber": {
-	"id": "github/debian-tex/biber",
-	"title": "github/debian-tex/biber",
-	"url": " https://rseng.github.io/software/repository/github/debian-tex/biber",
-	"content": "Much-augmented BibTeX replacement for BibLaTeX users"
+	"gitlab/cosmograil/PyCS3": {
+	"id": "gitlab/cosmograil/PyCS3",
+	"title": "gitlab/cosmograil/PyCS3",
+	"url": " https://rseng.github.io/software/repository/gitlab/cosmograil/PyCS3",
+	"content": "PyCS for python 3"
 	},
-	"github/samconnolly/DELightcurveSimulation": {
-	"id": "github/samconnolly/DELightcurveSimulation",
-	"title": "github/samconnolly/DELightcurveSimulation",
-	"url": " https://rseng.github.io/software/repository/github/samconnolly/DELightcurveSimulation",
-	"content": "Emmanoulopoulos style lightcurve simulation"
+	"gitlab/cosmograil/starred": {
+	"id": "gitlab/cosmograil/starred",
+	"title": "gitlab/cosmograil/starred",
+	"url": " https://rseng.github.io/software/repository/gitlab/cosmograil/starred",
+	"content": "A two-channel deconvolution method with Starlet regularization"
 	},
-	"github/Siegel-Lab/BioSmoother": {
-	"id": "github/Siegel-Lab/BioSmoother",
-	"title": "github/Siegel-Lab/BioSmoother",
-	"url": " https://rseng.github.io/software/repository/github/Siegel-Lab/BioSmoother",
-	"content": "On-the-fly processing and visualization of interactome data"
+	"gitlab/etienne.behar/menura": {
+	"id": "gitlab/etienne.behar/menura",
+	"title": "gitlab/etienne.behar/menura",
+	"url": " https://rseng.github.io/software/repository/gitlab/etienne.behar/menura",
+	"content": "Menura is a space plasma simulation code. It is built around a hybrid Particle In Cell (PIC) solver, running on Graphics Processing Units. More informations on https://menura.readthedocs.io"
 	},
-	"github/HEML/HEML": {
-	"id": "github/HEML/HEML",
-	"title": "github/HEML/HEML",
-	"url": " https://rseng.github.io/software/repository/github/HEML/HEML",
-	"content": "Open Source v1 for the Hyper-Elastic Mass Links (HEML) software"
+	"gitlab/sigcorr/sigcorr": {
+	"id": "gitlab/sigcorr/sigcorr",
+	"title": "gitlab/sigcorr/sigcorr",
+	"url": " https://rseng.github.io/software/repository/gitlab/sigcorr/sigcorr",
+	"content": "None"
 	},
-	"github/mtsch/Ripserer.jl": {
-	"id": "github/mtsch/Ripserer.jl",
-	"title": "github/mtsch/Ripserer.jl",
-	"url": " https://rseng.github.io/software/repository/github/mtsch/Ripserer.jl",
-	"content": "Ripser and Ripserer"
+	"gitlab/aroffringa/wsclean": {
+	"id": "gitlab/aroffringa/wsclean",
+	"title": "gitlab/aroffringa/wsclean",
+	"url": " https://rseng.github.io/software/repository/gitlab/aroffringa/wsclean",
+	"content": "WSClean (w-stacking clean) is a fast generic widefield imager. It implements several gridding algorithms and offers fully-automated multi-scale multi-frequency deconvolution. Manual: https://wsclean.readthedocs.io/"
 	},
-	"github/wbalmer/backtracks": {
-	"id": "github/wbalmer/backtracks",
-	"title": "github/wbalmer/backtracks",
-	"url": " https://rseng.github.io/software/repository/github/wbalmer/backtracks",
-	"content": "Python package to fit relative astrometry with background star motion tracks. "
+	"gitlab/aroffringa/aoflagger": {
+	"id": "gitlab/aroffringa/aoflagger",
+	"title": "gitlab/aroffringa/aoflagger",
+	"url": " https://rseng.github.io/software/repository/gitlab/aroffringa/aoflagger",
+	"content": "The AOFlagger is a tool that can find and remove radio-frequency interference (RFI) in radio astronomical observations. It can make use of Lua scripts to make flagging strategies flexible, and the tools are applicable to a wide set of telescopes."
 	},
-	"github/wbalmer/backtrack": {
-	"id": "github/wbalmer/backtrack",
-	"title": "github/wbalmer/backtrack",
-	"url": " https://rseng.github.io/software/repository/github/wbalmer/backtrack",
-	"content": "Python package to fit relative astrometry with background star motion tracks. "
+	"gitlab/gmamon/MAMPOSSt": {
+	"id": "gitlab/gmamon/MAMPOSSt",
+	"title": "gitlab/gmamon/MAMPOSSt",
+	"url": " https://rseng.github.io/software/repository/gitlab/gmamon/MAMPOSSt",
+	"content": "None"
 	},
-	"github/uab-cgds-worthey/quac": {
-	"id": "github/uab-cgds-worthey/quac",
-	"title": "github/uab-cgds-worthey/quac",
-	"url": " https://rseng.github.io/software/repository/github/uab-cgds-worthey/quac",
-	"content": "🦆 Quality Control of WGS and exome samples 🦆"
+	"gitlab/habermann_lab/phasik": {
+	"id": "gitlab/habermann_lab/phasik",
+	"title": "gitlab/habermann_lab/phasik",
+	"url": " https://rseng.github.io/software/repository/gitlab/habermann_lab/phasik",
+	"content": "Scientific tools for extracting cyclic data via hierarchical clustering"
 	},
-	"github/rorybarnes/EqTide": {
-	"id": "github/rorybarnes/EqTide",
-	"title": "github/rorybarnes/EqTide",
-	"url": " https://rseng.github.io/software/repository/github/rorybarnes/EqTide",
-	"content": "Source code for Equilibrium Tide calculations"
+	"gitlab/aceteam.kaist/ACE-Molecule": {
+	"id": "gitlab/aceteam.kaist/ACE-Molecule",
+	"title": "gitlab/aceteam.kaist/ACE-Molecule",
+	"url": " https://rseng.github.io/software/repository/gitlab/aceteam.kaist/ACE-Molecule",
+	"content": "GitLab repository for ACE-Molecule."
 	},
-	"github/sensein/etelemetry-client": {
-	"id": "github/sensein/etelemetry-client",
-	"title": "github/sensein/etelemetry-client",
-	"url": " https://rseng.github.io/software/repository/github/sensein/etelemetry-client",
-	"content": "Etelemetry client"
+	"gitlab/RKIBioinformaticsPipelines/QCumber": {
+	"id": "gitlab/RKIBioinformaticsPipelines/QCumber",
+	"title": "gitlab/RKIBioinformaticsPipelines/QCumber",
+	"url": " https://rseng.github.io/software/repository/gitlab/RKIBioinformaticsPipelines/QCumber",
+	"content": "quality control of genomic sequences"
 	},
-	"github/virgesmith/neworder": {
-	"id": "github/virgesmith/neworder",
-	"title": "github/virgesmith/neworder",
-	"url": " https://rseng.github.io/software/repository/github/virgesmith/neworder",
-	"content": "A dynamic microsimulation framework for python"
+	"gitlab/jason-rumengan/pyarma": {
+	"id": "gitlab/jason-rumengan/pyarma",
+	"title": "gitlab/jason-rumengan/pyarma",
+	"url": " https://rseng.github.io/software/repository/gitlab/jason-rumengan/pyarma",
+	"content": "PyArmadillo - linear algebra library for Python with MATLAB-like syntax - https://pyarma.sourceforge.io"
 	},
-	"github/Bioinformatics-Munich/scas_dashboard": {
-	"id": "github/Bioinformatics-Munich/scas_dashboard",
-	"title": "github/Bioinformatics-Munich/scas_dashboard",
-	"url": " https://rseng.github.io/software/repository/github/Bioinformatics-Munich/scas_dashboard",
-	"content": "SCAS dashboard: A tool to intuitively and interactively analyze Slurm cluster usage"
+	"gitlab/elsi_project/elsi_interface": {
+	"id": "gitlab/elsi_project/elsi_interface",
+	"title": "gitlab/elsi_project/elsi_interface",
+	"url": " https://rseng.github.io/software/repository/gitlab/elsi_project/elsi_interface",
+	"content": "ELSI:  A software interface designed for electronic structure codes to connect with ELPA, libOMM, PEXSI, EigenExa, SLEPc, NTPoly, BSEPACK, LAPACK, MAGMA, and other solver libraries."
 	},
-	"github/openneuropet/PET2BIDS": {
-	"id": "github/openneuropet/PET2BIDS",
-	"title": "github/openneuropet/PET2BIDS",
-	"url": " https://rseng.github.io/software/repository/github/openneuropet/PET2BIDS",
-	"content": "PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side files like .e.g excel sheets -- paper @JOSS  https://doi.org/10.21105/joss.06067"
+	"gitlab/german.tischler/biobambam2": {
+	"id": "gitlab/german.tischler/biobambam2",
+	"title": "gitlab/german.tischler/biobambam2",
+	"url": " https://rseng.github.io/software/repository/gitlab/german.tischler/biobambam2",
+	"content": "Tools for early stage alignment file processing"
 	},
-	"github/Pometry/Raphtory": {
-	"id": "github/Pometry/Raphtory",
-	"title": "github/Pometry/Raphtory",
-	"url": " https://rseng.github.io/software/repository/github/Pometry/Raphtory",
-	"content": "Blazingly fast, vectorised, parallel, and scalable temporal graph engine for Rust, Python and JavaScript"
+	"gitlab/german.tischler/libmaus2": {
+	"id": "gitlab/german.tischler/libmaus2",
+	"title": "gitlab/german.tischler/libmaus2",
+	"url": " https://rseng.github.io/software/repository/gitlab/german.tischler/libmaus2",
+	"content": "collection of data structures and algorithms"
 	},
-	"github/ixkael/Delight": {
-	"id": "github/ixkael/Delight",
-	"title": "github/ixkael/Delight",
-	"url": " https://rseng.github.io/software/repository/github/ixkael/Delight",
-	"content": "Photometric redshift via Gaussian processes with physical kernels"
+	"gitlab/paulklemm_PHD/proteinortho": {
+	"id": "gitlab/paulklemm_PHD/proteinortho",
+	"title": "gitlab/paulklemm_PHD/proteinortho",
+	"url": " https://rseng.github.io/software/repository/gitlab/paulklemm_PHD/proteinortho",
+	"content": "Proteinortho is a tool to detect orthologous genes within different species. [(Download)](https://gitlab.com/paulklemm_PHD/proteinortho/-/archive/master/proteinortho-master.tar.gz)"
 	},
-	"github/ixkael/QuickSip": {
-	"id": "github/ixkael/QuickSip",
-	"title": "github/ixkael/QuickSip",
-	"url": " https://rseng.github.io/software/repository/github/ixkael/QuickSip",
-	"content": "Pipeline to quickly project Survey Image Properties (e.g. seeing, sky noise, airmass) onto the sky into Healpix maps using flexible weighting schemes. Initially designed to produce maps of observing condition related sources of systematics for the Dark Energy Survey, but will work with any multi-epoch survey and collection of images with valid WCS information."
+	"gitlab/MartinBeseda/sa-oo-vqe-qiskit": {
+	"id": "gitlab/MartinBeseda/sa-oo-vqe-qiskit",
+	"title": "gitlab/MartinBeseda/sa-oo-vqe-qiskit",
+	"url": " https://rseng.github.io/software/repository/gitlab/MartinBeseda/sa-oo-vqe-qiskit",
+	"content": "Qiskit version of SA-OO-VQE"
 	},
-	"github/ixkael/3DEX": {
-	"id": "github/ixkael/3DEX",
-	"title": "github/ixkael/3DEX",
-	"url": " https://rseng.github.io/software/repository/github/ixkael/3DEX",
-	"content": "3D expansions"
+	"gitlab/aegge/comet-emu": {
+	"id": "gitlab/aegge/comet-emu",
+	"title": "gitlab/aegge/comet-emu",
+	"url": " https://rseng.github.io/software/repository/gitlab/aegge/comet-emu",
+	"content": "None"
 	},
-	"github/Pithikos/C-Thread-Pool": {
-	"id": "github/Pithikos/C-Thread-Pool",
-	"title": "github/Pithikos/C-Thread-Pool",
-	"url": " https://rseng.github.io/software/repository/github/Pithikos/C-Thread-Pool",
-	"content": "A minimal but powerful thread pool in ANSI C"
+	"gitlab/cracklet/cracklet": {
+	"id": "gitlab/cracklet/cracklet",
+	"title": "gitlab/cracklet/cracklet",
+	"url": " https://rseng.github.io/software/repository/gitlab/cracklet/cracklet",
+	"content": "cRacklet is a C++ boundary element library based on a spectral formulation of the elastodynamic wave equations in continuum solids."
 	},
-	"github/YenWenWang/HapDipKinship": {
-	"id": "github/YenWenWang/HapDipKinship",
-	"title": "github/YenWenWang/HapDipKinship",
-	"url": " https://rseng.github.io/software/repository/github/YenWenWang/HapDipKinship",
-	"content": "Algorithms to estimate kinship in haploid-diploid mixed populations"
+	"gitlab/materials-modeling/calorine": {
+	"id": "gitlab/materials-modeling/calorine",
+	"title": "gitlab/materials-modeling/calorine",
+	"url": " https://rseng.github.io/software/repository/gitlab/materials-modeling/calorine",
+	"content": "[A python tool box for GPUMD simulations](https://calorine.materialsmodeling.org/)"
 	},
-	"github/OpenEnergyPlatform/open-MaStR": {
-	"id": "github/OpenEnergyPlatform/open-MaStR",
-	"title": "github/OpenEnergyPlatform/open-MaStR",
-	"url": " https://rseng.github.io/software/repository/github/OpenEnergyPlatform/open-MaStR",
-	"content": "A collaborative software to download the energy database Marktstammdatenregister (MaStR)"
+	"gitlab/chrjan/seq-seq-pan": {
+	"id": "gitlab/chrjan/seq-seq-pan",
+	"title": "gitlab/chrjan/seq-seq-pan",
+	"url": " https://rseng.github.io/software/repository/gitlab/chrjan/seq-seq-pan",
+	"content": "seq-seq-pan is a workflow for the SEQuential alignment of SEQuences to build a PAN-genome data structure and a whole-genome-alignment."
 	},
-	"github/goshng/polap": {
-	"id": "github/goshng/polap",
-	"title": "github/goshng/polap",
-	"url": " https://rseng.github.io/software/repository/github/goshng/polap",
-	"content": "Polap is a plant mtDNA assembly pipeline using Flye long-read assembler guided by organelle gene annotation."
+	"gitlab/multigris/mgris": {
+	"id": "gitlab/multigris/mgris",
+	"title": "gitlab/multigris/mgris",
+	"url": " https://rseng.github.io/software/repository/gitlab/multigris/mgris",
+	"content": "MULTIGRIS (&#34;mgris&#34;) is a Bayesian multi-dimensional grid search using PyMC to extract the posterior distributions of primary grid parameters and predict unobserved parameters/observables."
 	},
-	"github/glis-glis/loci": {
-	"id": "github/glis-glis/loci",
-	"title": "github/glis-glis/loci",
-	"url": " https://rseng.github.io/software/repository/github/glis-glis/loci",
-	"content": "Smooth Cubic Multivariate Local Interpolations"
+	"gitlab/octopus-code/octopus": {
+	"id": "gitlab/octopus-code/octopus",
+	"title": "gitlab/octopus-code/octopus",
+	"url": " https://rseng.github.io/software/repository/gitlab/octopus-code/octopus",
+	"content": "Real-space Time-Dependent Density Functional Theory code"
 	},
-	"github/inab/trimal": {
-	"id": "github/inab/trimal",
-	"title": "github/inab/trimal",
-	"url": " https://rseng.github.io/software/repository/github/inab/trimal",
-	"content": "A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0"
+	"gitlab/Molcas/OpenMolcas": {
+	"id": "gitlab/Molcas/OpenMolcas",
+	"title": "gitlab/Molcas/OpenMolcas",
+	"url": " https://rseng.github.io/software/repository/gitlab/Molcas/OpenMolcas",
+	"content": "OpenMolcas is a quantum chemistry software package.
+
+The key feature of OpenMolcas is the multiconfigurational approach to the electronic structure."
 	},
-	"github/hera-team/librarian": {
-	"id": "github/hera-team/librarian",
-	"title": "github/hera-team/librarian",
-	"url": " https://rseng.github.io/software/repository/github/hera-team/librarian",
-	"content": "The HERA Librarian."
+	"gitlab/medbio/disgenet2r": {
+	"id": "gitlab/medbio/disgenet2r",
+	"title": "gitlab/medbio/disgenet2r",
+	"url": " https://rseng.github.io/software/repository/gitlab/medbio/disgenet2r",
+	"content": "None"
 	},
-	"github/conchoecia/pauvre": {
-	"id": "github/conchoecia/pauvre",
-	"title": "github/conchoecia/pauvre",
-	"url": " https://rseng.github.io/software/repository/github/conchoecia/pauvre",
-	"content": "Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads."
+	"gitlab/andrea-tango/ficos": {
+	"id": "gitlab/andrea-tango/ficos",
+	"title": "gitlab/andrea-tango/ficos",
+	"url": " https://rseng.github.io/software/repository/gitlab/andrea-tango/ficos",
+	"content": ""
 	},
-	"github/akinremisa/rfsed": {
-	"id": "github/akinremisa/rfsed",
-	"title": "github/akinremisa/rfsed",
-	"url": " https://rseng.github.io/software/repository/github/akinremisa/rfsed",
-	"content": "Package for standard and sediment correction receiver functions analysis"
+	"gitlab/davidwoodburn/itrm": {
+	"id": "gitlab/davidwoodburn/itrm",
+	"title": "gitlab/davidwoodburn/itrm",
+	"url": " https://rseng.github.io/software/repository/gitlab/davidwoodburn/itrm",
+	"content": "Interactive Terminal Utilities"
 	},
-	"github/chandra-marx/marxs": {
-	"id": "github/chandra-marx/marxs",
-	"title": "github/chandra-marx/marxs",
-	"url": " https://rseng.github.io/software/repository/github/chandra-marx/marxs",
-	"content": "Multi-Architecture-Raytrace-Xraymission-Simulator"
+	"gitlab/casi-project/casi-2d": {
+	"id": "gitlab/casi-project/casi-2d",
+	"title": "gitlab/casi-project/casi-2d",
+	"url": " https://rseng.github.io/software/repository/gitlab/casi-project/casi-2d",
+	"content": "Identification of  stellar feedback signatures in simulated molecular clouds using methods from deep learning."
 	},
-	"github/sblunt/orbitize": {
-	"id": "github/sblunt/orbitize",
-	"title": "github/sblunt/orbitize",
-	"url": " https://rseng.github.io/software/repository/github/sblunt/orbitize",
-	"content": "Orbit-fitting for directly imaged objects"
+	"gitlab/casi-project/casi-3d": {
+	"id": "gitlab/casi-project/casi-3d",
+	"title": "gitlab/casi-project/casi-3d",
+	"url": " https://rseng.github.io/software/repository/gitlab/casi-project/casi-3d",
+	"content": "None"
 	},
-	"github/ctSkennerton/crass": {
-	"id": "github/ctSkennerton/crass",
-	"title": "github/ctSkennerton/crass",
-	"url": " https://rseng.github.io/software/repository/github/ctSkennerton/crass",
-	"content": "Crass is designed to identify and reconstruct CRISPR loci from raw metagenomic data without the need for assembly or prior knowledge of CRISPR in the data set."
+	"gitlab/binary_c/binary_c-python": {
+	"id": "gitlab/binary_c/binary_c-python",
+	"title": "gitlab/binary_c/binary_c-python",
+	"url": " https://rseng.github.io/software/repository/gitlab/binary_c/binary_c-python",
+	"content": "Python module to interface with the binary_c stellar population framework.
+
+The current stable branch is 1.0.0 which you can find in the [releases/1.0.0/2.2.4 branch](https://gitlab.com/binary_c/binary_c-python/-/tree/releases/1.0.0/2.2.4) which works with [binary_c version 2.2.4](https://gitlab.com/binary_c/binary_c/-/tree/development/2.2.4)"
 	},
-	"github/ctSkennerton/minced": {
-	"id": "github/ctSkennerton/minced",
-	"title": "github/ctSkennerton/minced",
-	"url": " https://rseng.github.io/software/repository/github/ctSkennerton/minced",
-	"content": "Mining CRISPRs in Environmental Datasets"
+	"gitlab/emd-dev/emd": {
+	"id": "gitlab/emd-dev/emd",
+	"title": "gitlab/emd-dev/emd",
+	"url": " https://rseng.github.io/software/repository/gitlab/emd-dev/emd",
+	"content": "Empirical Mode Decomposition in Python
+
+&lt;a href=&#34;https://gitlab.com/ajquinn/emd/commits/master&#34;&gt;&lt;img alt=&#34;pipeline status&#34; src=&#34;https://gitlab.com/ajquinn/emd/badges/master/pipeline.svg&#34; /&gt;&lt;/a&gt;"
 	},
-	"github/TinkerTools/Tinker-HP": {
-	"id": "github/TinkerTools/Tinker-HP",
-	"title": "github/TinkerTools/Tinker-HP",
-	"url": " https://rseng.github.io/software/repository/github/TinkerTools/Tinker-HP",
-	"content": "Tinker-HP: High-Performance Massively Parallel Evolution of Tinker on CPUs &amp; GPUs"
+	"gitlab/rahmannlab/episegmix": {
+	"id": "gitlab/rahmannlab/episegmix",
+	"title": "gitlab/rahmannlab/episegmix",
+	"url": " https://rseng.github.io/software/repository/gitlab/rahmannlab/episegmix",
+	"content": "None"
 	},
-	"github/TinkerTools/tinker9": {
-	"id": "github/TinkerTools/tinker9",
-	"title": "github/TinkerTools/tinker9",
-	"url": " https://rseng.github.io/software/repository/github/TinkerTools/tinker9",
-	"content": "Tinker9: Next Generation of Tinker with GPU Support"
+	"gitlab/loic.cg.rossi/pymiedap": {
+	"id": "gitlab/loic.cg.rossi/pymiedap",
+	"title": "gitlab/loic.cg.rossi/pymiedap",
+	"url": " https://rseng.github.io/software/repository/gitlab/loic.cg.rossi/pymiedap",
+	"content": "PyMieDAP = Python Mie Doubling Adding Program. A radiative transfer code with polarization."
 	},
-	"github/astrockragh/Mangrove": {
-	"id": "github/astrockragh/Mangrove",
-	"title": "github/astrockragh/Mangrove",
-	"url": " https://rseng.github.io/software/repository/github/astrockragh/Mangrove",
-	"content": "Using Graph Neural Networks to regress baryonic properties directly from full dark matter merger trees."
+	"gitlab/souvlaki/thalassa": {
+	"id": "gitlab/souvlaki/thalassa",
+	"title": "gitlab/souvlaki/thalassa",
+	"url": " https://rseng.github.io/software/repository/gitlab/souvlaki/thalassa",
+	"content": "None"
 	},
-	"github/sebastian-zieba/PACMAN": {
-	"id": "github/sebastian-zieba/PACMAN",
-	"title": "github/sebastian-zieba/PACMAN",
-	"url": " https://rseng.github.io/software/repository/github/sebastian-zieba/PACMAN",
-	"content": "PACMAN is a pipeline to reduce and analyze data collected by Hubble Wide Field Camera 3 (HST/WFC3) using either the G102 or G141 grism."
+	"gitlab/ezlab/busco": {
+	"id": "gitlab/ezlab/busco",
+	"title": "gitlab/ezlab/busco",
+	"url": " https://rseng.github.io/software/repository/gitlab/ezlab/busco",
+	"content": "Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs (BUSCO)"
 	},
-	"github/ChemaPalencia/M_SMiLe": {
-	"id": "github/ChemaPalencia/M_SMiLe",
-	"title": "github/ChemaPalencia/M_SMiLe",
-	"url": " https://rseng.github.io/software/repository/github/ChemaPalencia/M_SMiLe",
-	"content": "Code to provide approximate magnification probability distributions under microlensing by compact objects such as stars or PBHs of strongly lensed stars."
+	"gitlab/AstroVian/bmarxiv": {
+	"id": "gitlab/AstroVian/bmarxiv",
+	"title": "gitlab/AstroVian/bmarxiv",
+	"url": " https://rseng.github.io/software/repository/gitlab/AstroVian/bmarxiv",
+	"content": "None"
 	},
-	"github/ajshajib/LensingETC": {
-	"id": "github/ajshajib/LensingETC",
-	"title": "github/ajshajib/LensingETC",
-	"url": " https://rseng.github.io/software/repository/github/ajshajib/LensingETC",
-	"content": "Lensing Exposure Time Calculator"
+	"gitlab/sevecekp/sph": {
+	"id": "gitlab/sevecekp/sph",
+	"title": "gitlab/sevecekp/sph",
+	"url": " https://rseng.github.io/software/repository/gitlab/sevecekp/sph",
+	"content": "Library and graphical tools for running SPH and N-body simulations."
 	},
-	"github/ajshajib/dolphin": {
-	"id": "github/ajshajib/dolphin",
-	"title": "github/ajshajib/dolphin",
-	"url": " https://rseng.github.io/software/repository/github/ajshajib/dolphin",
-	"content": "Automated pipeline for lens modelling based on lenstronomy."
+	"gitlab/uit-sfb/metapipe": {
+	"id": "gitlab/uit-sfb/metapipe",
+	"title": "gitlab/uit-sfb/metapipe",
+	"url": " https://rseng.github.io/software/repository/gitlab/uit-sfb/metapipe",
+	"content": "Metapipe based on Nextflow"
 	},
-	"github/ariedel/lacewing": {
-	"id": "github/ariedel/lacewing",
-	"title": "github/ariedel/lacewing",
-	"url": " https://rseng.github.io/software/repository/github/ariedel/lacewing",
-	"content": "Repository for the LACEwING moving group identification code (Riedel et al. 2017)"
+	"gitlab/ztzou/phydl": {
+	"id": "gitlab/ztzou/phydl",
+	"title": "gitlab/ztzou/phydl",
+	"url": " https://rseng.github.io/software/repository/gitlab/ztzou/phydl",
+	"content": "Phylogenetics by Deep Learning. A residual neural network for inference of quartet phylogenetic tree topology."
 	},
-	"github/abmantz/lrgs": {
-	"id": "github/abmantz/lrgs",
-	"title": "github/abmantz/lrgs",
-	"url": " https://rseng.github.io/software/repository/github/abmantz/lrgs",
-	"content": "Code to perform multivariate linear regression using Gibbs sampling"
+	"gitlab/rki_bioinformatics/purple": {
+	"id": "gitlab/rki_bioinformatics/purple",
+	"title": "gitlab/rki_bioinformatics/purple",
+	"url": " https://rseng.github.io/software/repository/gitlab/rki_bioinformatics/purple",
+	"content": "Picking Unique Relevant Peptides for viraL Experiments
+
+Authors: Johanna Lechner [@LechnerJ], Pauline Hiortand Felix Hartkopf [@HartkopfF]
+
+Support: https://gitlab.com/HartkopfF/Purple
+
+Download: https://gitlab.com/HartkopfF/Purple/releases"
 	},
-	"github/abmantz/lmc": {
-	"id": "github/abmantz/lmc",
-	"title": "github/abmantz/lmc",
-	"url": " https://rseng.github.io/software/repository/github/abmantz/lmc",
-	"content": "Logarithmantic Monte Carlo"
+	"gitlab/rki_bioinformatics/IDeFIX": {
+	"id": "gitlab/rki_bioinformatics/IDeFIX",
+	"title": "gitlab/rki_bioinformatics/IDeFIX",
+	"url": " https://rseng.github.io/software/repository/gitlab/rki_bioinformatics/IDeFIX",
+	"content": "Index checking for improved demultiplexing of NGS data"
 	},
-	"github/abmantz/rgw": {
-	"id": "github/abmantz/rgw",
-	"title": "github/abmantz/rgw",
-	"url": " https://rseng.github.io/software/repository/github/abmantz/rgw",
-	"content": "A lightweight R-language implementation of the affine-invariant sampling method of Goodman &amp; Weare (2010)"
+	"gitlab/rki_bioinformatics/HiLive2": {
+	"id": "gitlab/rki_bioinformatics/HiLive2",
+	"title": "gitlab/rki_bioinformatics/HiLive2",
+	"url": " https://rseng.github.io/software/repository/gitlab/rki_bioinformatics/HiLive2",
+	"content": "HiLive2 is a read mapping tool that maps Illumina HiSeq (or comparable) reads right in the moment when they are produced. Please create issues for HiLive2 at https://gitlab.com/lokat/HiLive2."
 	},
-	"github/UFParLab/aces4": {
-	"id": "github/UFParLab/aces4",
-	"title": "github/UFParLab/aces4",
-	"url": " https://rseng.github.io/software/repository/github/UFParLab/aces4",
-	"content": "Parallel Computational Chemistry Application"
+	"gitlab/jtagusari/hrisk-noisemodelling": {
+	"id": "gitlab/jtagusari/hrisk-noisemodelling",
+	"title": "gitlab/jtagusari/hrisk-noisemodelling",
+	"url": " https://rseng.github.io/software/repository/gitlab/jtagusari/hrisk-noisemodelling",
+	"content": "None"
 	},
-	"github/tvwenger/HII-Region-Models": {
-	"id": "github/tvwenger/HII-Region-Models",
-	"title": "github/tvwenger/HII-Region-Models",
-	"url": " https://rseng.github.io/software/repository/github/tvwenger/HII-Region-Models",
+	"gitlab/mauricemolli/petitRADTRANS": {
+	"id": "gitlab/mauricemolli/petitRADTRANS",
+	"title": "gitlab/mauricemolli/petitRADTRANS",
+	"url": " https://rseng.github.io/software/repository/gitlab/mauricemolli/petitRADTRANS",
 	"content": "None"
 	},
-	"github/tvwenger/tmbidl": {
-	"id": "github/tvwenger/tmbidl",
-	"title": "github/tvwenger/tmbidl",
-	"url": " https://rseng.github.io/software/repository/github/tvwenger/tmbidl",
-	"content": "TMBIDL - Single Dish Radio Astronomy Data Reduction Package"
+	"gitlab/picos-api/picos": {
+	"id": "gitlab/picos-api/picos",
+	"title": "gitlab/picos-api/picos",
+	"url": " https://rseng.github.io/software/repository/gitlab/picos-api/picos",
+	"content": "A Python interface to conic optimization solvers."
 	},
-	"github/tvwenger/hii-region-kinematics": {
-	"id": "github/tvwenger/hii-region-kinematics",
-	"title": "github/tvwenger/hii-region-kinematics",
-	"url": " https://rseng.github.io/software/repository/github/tvwenger/hii-region-kinematics",
-	"content": "Radio recombination line observations of simulated HII regions with various internal kinematic structure"
+	"gitlab/remikz/nccmp": {
+	"id": "gitlab/remikz/nccmp",
+	"title": "gitlab/remikz/nccmp",
+	"url": " https://rseng.github.io/software/repository/gitlab/remikz/nccmp",
+	"content": "nccmp - Compare 2 NetCDF files. "
 	},
-	"github/tvwenger/millennium-tap-query": {
-	"id": "github/tvwenger/millennium-tap-query",
-	"title": "github/tvwenger/millennium-tap-query",
-	"url": " https://rseng.github.io/software/repository/github/tvwenger/millennium-tap-query",
-	"content": "A Python Tool to Query the Millennium Simulation UWS/TAP client"
+	"gitlab/ffaucher/hawen": {
+	"id": "gitlab/ffaucher/hawen",
+	"title": "gitlab/ffaucher/hawen",
+	"url": " https://rseng.github.io/software/repository/gitlab/ffaucher/hawen",
+	"content": "time-HArmonic Wave modEling and INversion using Hybridizable Discontinuous Galerkin Discretization (hawen). The code is written in Fortran90, for forward and inverse time-harmonic wave problems. It uses mpi and openmp parallelism."
 	},
-	"github/tvwenger/wisp": {
-	"id": "github/tvwenger/wisp",
-	"title": "github/tvwenger/wisp",
-	"url": " https://rseng.github.io/software/repository/github/tvwenger/wisp",
-	"content": "WISP: Wenger Interferometry Software Package"
+	"gitlab/eleonoraalei/exo-mercat-gui": {
+	"id": "gitlab/eleonoraalei/exo-mercat-gui",
+	"title": "gitlab/eleonoraalei/exo-mercat-gui",
+	"url": " https://rseng.github.io/software/repository/gitlab/eleonoraalei/exo-mercat-gui",
+	"content": "The Graphical User Interface of Exo-MerCat."
 	},
-	"github/tvwenger/kd": {
-	"id": "github/tvwenger/kd",
-	"title": "github/tvwenger/kd",
-	"url": " https://rseng.github.io/software/repository/github/tvwenger/kd",
-	"content": "Utilities to calculate kinematic distances"
+	"gitlab/mcfuman/SpectraPy": {
+	"id": "gitlab/mcfuman/SpectraPy",
+	"title": "gitlab/mcfuman/SpectraPy",
+	"url": " https://rseng.github.io/software/repository/gitlab/mcfuman/SpectraPy",
+	"content": "Python module to extract and reduce astronomical spectral data"
 	},
-	"github/tvwenger/bayes_spec": {
-	"id": "github/tvwenger/bayes_spec",
-	"title": "github/tvwenger/bayes_spec",
-	"url": " https://rseng.github.io/software/repository/github/tvwenger/bayes_spec",
-	"content": "A Bayesian Spectral Line Modeling Framework"
+	"gitlab/joseaher/astroplotlib": {
+	"id": "gitlab/joseaher/astroplotlib",
+	"title": "gitlab/joseaher/astroplotlib",
+	"url": " https://rseng.github.io/software/repository/gitlab/joseaher/astroplotlib",
+	"content": "None"
 	},
-	"github/tvwenger/kinematic_scaleheight": {
-	"id": "github/tvwenger/kinematic_scaleheight",
-	"title": "github/tvwenger/kinematic_scaleheight",
-	"url": " https://rseng.github.io/software/repository/github/tvwenger/kinematic_scaleheight",
-	"content": "Use MCMC methods to kinematically estimate the vertical distribution of clouds in the Galactic plane"
+	"gitlab/mobse/source-code": {
+	"id": "gitlab/mobse/source-code",
+	"title": "gitlab/mobse/source-code",
+	"url": " https://rseng.github.io/software/repository/gitlab/mobse/source-code",
+	"content": "None"
 	},
-	"github/llrs/experDesign": {
-	"id": "github/llrs/experDesign",
-	"title": "github/llrs/experDesign",
-	"url": " https://rseng.github.io/software/repository/github/llrs/experDesign",
-	"content": "Design experiments distributed in several batches"
+	"gitlab/kmrajwade/iqrm_apollo": {
+	"id": "gitlab/kmrajwade/iqrm_apollo",
+	"title": "gitlab/kmrajwade/iqrm_apollo",
+	"url": " https://rseng.github.io/software/repository/gitlab/kmrajwade/iqrm_apollo",
+	"content": "A standalone code to clean narrow-band RFI using Inter-Quartile Range Mitigation (IQRM) algorithm. The code works on SIGPROC format data and outputs a cleaned SIGRPOC format file. The output file is compatible with other standard pulsar software."
+	},
+	"gitlab/ags-data-format-wg/ags-python-library": {
+	"id": "gitlab/ags-data-format-wg/ags-python-library",
+	"title": "gitlab/ags-data-format-wg/ags-python-library",
+	"url": " https://rseng.github.io/software/repository/gitlab/ags-data-format-wg/ags-python-library",
+	"content": "A library to read and write AGS files using Pandas DataFrames"
+	},
+	"gitlab/bu_cnio/vulcanspot": {
+	"id": "gitlab/bu_cnio/vulcanspot",
+	"title": "gitlab/bu_cnio/vulcanspot",
+	"url": " https://rseng.github.io/software/repository/gitlab/bu_cnio/vulcanspot",
+	"content": ""
 	},
-	"github/easystats/parameters": {
-	"id": "github/easystats/parameters",
-	"title": "github/easystats/parameters",
-	"url": " https://rseng.github.io/software/repository/github/easystats/parameters",
-	"content": ":bar_chart: Computation and processing of models&#39; parameters"
+	"gitlab/JuditGG/trumpetplots": {
+	"id": "gitlab/JuditGG/trumpetplots",
+	"title": "gitlab/JuditGG/trumpetplots",
+	"url": " https://rseng.github.io/software/repository/gitlab/JuditGG/trumpetplots",
+	"content": "Rpackage for Trumpet plots"
 	},
-	"github/easystats/correlation": {
-	"id": "github/easystats/correlation",
-	"title": "github/easystats/correlation",
-	"url": " https://rseng.github.io/software/repository/github/easystats/correlation",
-	"content": ":link: Methods for Correlation Analysis"
+	"gitlab/LouisLab/PiVR": {
+	"id": "gitlab/LouisLab/PiVR",
+	"title": "gitlab/LouisLab/PiVR",
+	"url": " https://rseng.github.io/software/repository/gitlab/LouisLab/PiVR",
+	"content": "PiVR has been developed to track a variety of animals in real time and present them with light stimuli. Manual can be found at www.PiVR.org, scientific publication at  https://doi.org/10.1371/journal.pbio.3000712
+"
 	},
-	"github/easystats/performance": {
-	"id": "github/easystats/performance",
-	"title": "github/easystats/performance",
-	"url": " https://rseng.github.io/software/repository/github/easystats/performance",
-	"content": ":muscle: Models&#39; quality and performance metrics (R2, ICC, LOO, AIC, BF, ...)"
+	"gitlab/davidtourigny/dynamic-fba": {
+	"id": "gitlab/davidtourigny/dynamic-fba",
+	"title": "gitlab/davidtourigny/dynamic-fba",
+	"url": " https://rseng.github.io/software/repository/gitlab/davidtourigny/dynamic-fba",
+	"content": ""
 	},
-	"github/easystats/effectsize": {
-	"id": "github/easystats/effectsize",
-	"title": "github/easystats/effectsize",
-	"url": " https://rseng.github.io/software/repository/github/easystats/effectsize",
-	"content": ":dragon: Compute and work with indices of effect size and standardized parameters"
+	"gitlab/mainlabwsu/bims": {
+	"id": "gitlab/mainlabwsu/bims",
+	"title": "gitlab/mainlabwsu/bims",
+	"url": " https://rseng.github.io/software/repository/gitlab/mainlabwsu/bims",
+	"content": "BIMS"
 	},
-	"github/RajLabMSSM/echolocatoR": {
-	"id": "github/RajLabMSSM/echolocatoR",
-	"title": "github/RajLabMSSM/echolocatoR",
-	"url": " https://rseng.github.io/software/repository/github/RajLabMSSM/echolocatoR",
-	"content": "Automated statistical and functional fine-mapping pipeline with extensive API access to datasets."
+	"gitlab/project-dare/dare-platform": {
+	"id": "gitlab/project-dare/dare-platform",
+	"title": "gitlab/project-dare/dare-platform",
+	"url": " https://rseng.github.io/software/repository/gitlab/project-dare/dare-platform",
+	"content": ""
 	},
-	"github/pyplati/platipy": {
-	"id": "github/pyplati/platipy",
-	"title": "github/pyplati/platipy",
-	"url": " https://rseng.github.io/software/repository/github/pyplati/platipy",
-	"content": "Processing Library and Analysis Toolkit for Medical Imaging in Python"
+	"gitlab/BioimageInformaticsGroup/openphi": {
+	"id": "gitlab/BioimageInformaticsGroup/openphi",
+	"title": "gitlab/BioimageInformaticsGroup/openphi",
+	"url": " https://rseng.github.io/software/repository/gitlab/BioimageInformaticsGroup/openphi",
+	"content": "Open PatHology Interface - A Python API for accessing iSyntax digital pathology images"
 	},
-	"github/hope-data-science/tidyfst": {
-	"id": "github/hope-data-science/tidyfst",
-	"title": "github/hope-data-science/tidyfst",
-	"url": " https://rseng.github.io/software/repository/github/hope-data-science/tidyfst",
-	"content": "Tidy Verbs for Fast Data Manipulation"
+	"gitlab/libreumg/dataquier": {
+	"id": "gitlab/libreumg/dataquier",
+	"title": "gitlab/libreumg/dataquier",
+	"url": " https://rseng.github.io/software/repository/gitlab/libreumg/dataquier",
+	"content": ""
 	},
-	"github/ComtekAdvancedStructures/cmstatr": {
-	"id": "github/ComtekAdvancedStructures/cmstatr",
-	"title": "github/ComtekAdvancedStructures/cmstatr",
-	"url": " https://rseng.github.io/software/repository/github/ComtekAdvancedStructures/cmstatr",
-	"content": "An R Package for Statistical Analysis of Composite Material Data"
+	"gitlab/mbiagetti/persistent_homology_lss": {
+	"id": "gitlab/mbiagetti/persistent_homology_lss",
+	"title": "gitlab/mbiagetti/persistent_homology_lss",
+	"url": " https://rseng.github.io/software/repository/gitlab/mbiagetti/persistent_homology_lss",
+	"content": "Analyze halo catalogs using persistent homology to constrain cosmological parameters"
 	},
-	"github/GoelandProver/Goeland": {
-	"id": "github/GoelandProver/Goeland",
-	"title": "github/GoelandProver/Goeland",
-	"url": " https://rseng.github.io/software/repository/github/GoelandProver/Goeland",
-	"content": "A first-order concurrent automated theorem prover"
+	"gitlab/remram44/taguette": {
+	"id": "gitlab/remram44/taguette",
+	"title": "gitlab/remram44/taguette",
+	"url": " https://rseng.github.io/software/repository/gitlab/remram44/taguette",
+	"content": "Free and open source qualitative research tool"
 	},
-	"github/upb-lea/openmodelica-microgrid-gym": {
-	"id": "github/upb-lea/openmodelica-microgrid-gym",
-	"title": "github/upb-lea/openmodelica-microgrid-gym",
-	"url": " https://rseng.github.io/software/repository/github/upb-lea/openmodelica-microgrid-gym",
-	"content": "OpenModelica Microgrid Gym (OMG): An OpenAI Gym Environment for Microgrids"
+	"gitlab/geekysquirrel/bigx": {
+	"id": "gitlab/geekysquirrel/bigx",
+	"title": "gitlab/geekysquirrel/bigx",
+	"url": " https://rseng.github.io/software/repository/gitlab/geekysquirrel/bigx",
+	"content": "A data visualisation tool for geographic datasets"
 	},
-	"github/upb-lea/gym-electric-motor": {
-	"id": "github/upb-lea/gym-electric-motor",
-	"title": "github/upb-lea/gym-electric-motor",
-	"url": " https://rseng.github.io/software/repository/github/upb-lea/gym-electric-motor",
-	"content": "Gym Electric Motor (GEM): An OpenAI Gym Environment for Electric Motors"
+	"gitlab/fduchate/predihood": {
+	"id": "gitlab/fduchate/predihood",
+	"title": "gitlab/fduchate/predihood",
+	"url": " https://rseng.github.io/software/repository/gitlab/fduchate/predihood",
+	"content": ""
 	},
-	"github/upb-lea/ElectricGrid.jl": {
-	"id": "github/upb-lea/ElectricGrid.jl",
-	"title": "github/upb-lea/ElectricGrid.jl",
-	"url": " https://rseng.github.io/software/repository/github/upb-lea/ElectricGrid.jl",
-	"content": "A time domain electrical energy grid modeling and simulation tool with a focus on the control of power electronics converters"
+	"gitlab/andreas.andrusch/paipline": {
+	"id": "gitlab/andreas.andrusch/paipline",
+	"title": "gitlab/andreas.andrusch/paipline",
+	"url": " https://rseng.github.io/software/repository/gitlab/andreas.andrusch/paipline",
+	"content": "Pipeline for the Automatic Identification of Pathogens"
 	},
-	"github/fripon/freeture": {
-	"id": "github/fripon/freeture",
-	"title": "github/fripon/freeture",
-	"url": " https://rseng.github.io/software/repository/github/fripon/freeture",
-	"content": "A Free software to capTure meteors "
+	"gitlab/astron-idg/idg": {
+	"id": "gitlab/astron-idg/idg",
+	"title": "gitlab/astron-idg/idg",
+	"url": " https://rseng.github.io/software/repository/gitlab/astron-idg/idg",
+	"content": "Mirror of git.astron.nl/rd/idg"
 	},
-	"github/CAMI-challenge/CAMITAX": {
-	"id": "github/CAMI-challenge/CAMITAX",
-	"title": "github/CAMI-challenge/CAMITAX",
-	"url": " https://rseng.github.io/software/repository/github/CAMI-challenge/CAMITAX",
-	"content": "CAMITAX: Taxon labels for microbial genomes"
+	"gitlab/ENKI-portal/ThermoEngine": {
+	"id": "gitlab/ENKI-portal/ThermoEngine",
+	"title": "gitlab/ENKI-portal/ThermoEngine",
+	"url": " https://rseng.github.io/software/repository/gitlab/ENKI-portal/ThermoEngine",
+	"content": "Python, C, C++ and Objective C code that Implement thermodynamic properties of stoichiometric phases and solutions.  This is the main code repository of the ENKI project."
 	},
-	"github/ICESat2-SlideRule/paper": {
-	"id": "github/ICESat2-SlideRule/paper",
-	"title": "github/ICESat2-SlideRule/paper",
-	"url": " https://rseng.github.io/software/repository/github/ICESat2-SlideRule/paper",
-	"content": "JOSS paper materials"
+	"gitlab/ENKI-portal/vaporock": {
+	"id": "gitlab/ENKI-portal/vaporock",
+	"title": "gitlab/ENKI-portal/vaporock",
+	"url": " https://rseng.github.io/software/repository/gitlab/ENKI-portal/vaporock",
+	"content": "Thermodynamics of vaporized silicate rocks &amp; melts for modeling magma ocean atmospheres and stellar nebula"
 	},
-	"github/megbedell/wobble": {
-	"id": "github/megbedell/wobble",
-	"title": "github/megbedell/wobble",
-	"url": " https://rseng.github.io/software/repository/github/megbedell/wobble",
-	"content": "precise data-driven RV fitting, now with tellurics!"
+	"gitlab/ENKI-portal/ThermoCodegen": {
+	"id": "gitlab/ENKI-portal/ThermoCodegen",
+	"title": "gitlab/ENKI-portal/ThermoCodegen",
+	"url": " https://rseng.github.io/software/repository/gitlab/ENKI-portal/ThermoCodegen",
+	"content": "ThermoCodegen: a python/C++ package for the generation of custom thermodynamic models"
 	},
-	"github/yukiteruono/pbsim2": {
-	"id": "github/yukiteruono/pbsim2",
-	"title": "github/yukiteruono/pbsim2",
-	"url": " https://rseng.github.io/software/repository/github/yukiteruono/pbsim2",
-	"content": "PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores"
+	"gitlab/leelamichaels/Tranquillity": {
+	"id": "gitlab/leelamichaels/Tranquillity",
+	"title": "gitlab/leelamichaels/Tranquillity",
+	"url": " https://rseng.github.io/software/repository/gitlab/leelamichaels/Tranquillity",
+	"content": "Code Tranquillity release copy"
 	},
-	"github/VALENCE-software/VALENCE": {
-	"id": "github/VALENCE-software/VALENCE",
-	"title": "github/VALENCE-software/VALENCE",
-	"url": " https://rseng.github.io/software/repository/github/VALENCE-software/VALENCE",
-	"content": "quantum chemistry software"
+	"gitlab/leelamichaels/Infinity": {
+	"id": "gitlab/leelamichaels/Infinity",
+	"title": "gitlab/leelamichaels/Infinity",
+	"url": " https://rseng.github.io/software/repository/gitlab/leelamichaels/Infinity",
+	"content": "Code Infinity release copy"
 	},
-	"github/tomlouden/spiderman": {
-	"id": "github/tomlouden/spiderman",
-	"title": "github/tomlouden/spiderman",
-	"url": " https://rseng.github.io/software/repository/github/tomlouden/spiderman",
-	"content": "A fast code to simulate secondary transits and phase curves"
+	"gitlab/leelamichaels/Elysium": {
+	"id": "gitlab/leelamichaels/Elysium",
+	"title": "gitlab/leelamichaels/Elysium",
+	"url": " https://rseng.github.io/software/repository/gitlab/leelamichaels/Elysium",
+	"content": "Code Elysium release copy"
 	},
-	"github/VU-IVM/VineCopulas": {
-	"id": "github/VU-IVM/VineCopulas",
-	"title": "github/VU-IVM/VineCopulas",
-	"url": " https://rseng.github.io/software/repository/github/VU-IVM/VineCopulas",
-	"content": "A pure python implementation for vine copulas"
+	"gitlab/leelamichaels/Omega": {
+	"id": "gitlab/leelamichaels/Omega",
+	"title": "gitlab/leelamichaels/Omega",
+	"url": " https://rseng.github.io/software/repository/gitlab/leelamichaels/Omega",
+	"content": "Code Omega release copy"
 	},
-	"github/jfarek/xatlas": {
-	"id": "github/jfarek/xatlas",
-	"title": "github/jfarek/xatlas",
-	"url": " https://rseng.github.io/software/repository/github/jfarek/xatlas",
-	"content": "xAtlas is a fast and retrainable small variant caller that has been developed at the Baylor College of Medicine Human Genome Sequencing Center."
+	"gitlab/leelamichaels/Burning_Arrow": {
+	"id": "gitlab/leelamichaels/Burning_Arrow",
+	"title": "gitlab/leelamichaels/Burning_Arrow",
+	"url": " https://rseng.github.io/software/repository/gitlab/leelamichaels/Burning_Arrow",
+	"content": "Code Burning Arrow release copy"
 	},
-	"github/jfarek/alignstats": {
-	"id": "github/jfarek/alignstats",
-	"title": "github/jfarek/alignstats",
-	"url": " https://rseng.github.io/software/repository/github/jfarek/alignstats",
-	"content": "Comprehensive alignment, whole-genome coverage, and capture coverage statistics."
+	"gitlab/pythia-uq/pythia": {
+	"id": "gitlab/pythia-uq/pythia",
+	"title": "gitlab/pythia-uq/pythia",
+	"url": " https://rseng.github.io/software/repository/gitlab/pythia-uq/pythia",
+	"content": "PyThia Uncertainty Quantification Toolbox"
 	},
-	"github/desmid/mview": {
-	"id": "github/desmid/mview",
-	"title": "github/desmid/mview",
-	"url": " https://rseng.github.io/software/repository/github/desmid/mview",
-	"content": "MView extracts and reformats the results of a sequence database search or multiple alignment."
+	"gitlab/fibreglass/pivc": {
+	"id": "gitlab/fibreglass/pivc",
+	"title": "gitlab/fibreglass/pivc",
+	"url": " https://rseng.github.io/software/repository/gitlab/fibreglass/pivc",
+	"content": "None"
 	},
-	"github/msailer1234/JWST_Simulation": {
-	"id": "github/msailer1234/JWST_Simulation",
-	"title": "github/msailer1234/JWST_Simulation",
-	"url": " https://rseng.github.io/software/repository/github/msailer1234/JWST_Simulation",
+	"gitlab/burstcube/mhealpy": {
+	"id": "gitlab/burstcube/mhealpy",
+	"title": "gitlab/burstcube/mhealpy",
+	"url": " https://rseng.github.io/software/repository/gitlab/burstcube/mhealpy",
 	"content": "None"
 	},
-	"github/firedrakeproject/gusto": {
-	"id": "github/firedrakeproject/gusto",
-	"title": "github/firedrakeproject/gusto",
-	"url": " https://rseng.github.io/software/repository/github/firedrakeproject/gusto",
-	"content": "Three dimensional atmospheric dynamical core using the Gung Ho numerics."
+	"gitlab/sissopp_developers/sissopp": {
+	"id": "gitlab/sissopp_developers/sissopp",
+	"title": "gitlab/sissopp_developers/sissopp",
+	"url": " https://rseng.github.io/software/repository/gitlab/sissopp_developers/sissopp",
+	"content": "C++ implementation of sisso."
 	},
-	"github/firedrakeproject/checkpoint_schedules": {
-	"id": "github/firedrakeproject/checkpoint_schedules",
-	"title": "github/firedrakeproject/checkpoint_schedules",
-	"url": " https://rseng.github.io/software/repository/github/firedrakeproject/checkpoint_schedules",
-	"content": "Schedules for incremental checkpointing of adjoint simulations."
+	"gitlab/ChemBioHub/tpmap": {
+	"id": "gitlab/ChemBioHub/tpmap",
+	"title": "gitlab/ChemBioHub/tpmap",
+	"url": " https://rseng.github.io/software/repository/gitlab/ChemBioHub/tpmap",
+	"content": "Thermal Profiling Meltome Analysis Program"
 	},
-	"github/firedrakeproject/firedrake": {
-	"id": "github/firedrakeproject/firedrake",
-	"title": "github/firedrakeproject/firedrake",
-	"url": " https://rseng.github.io/software/repository/github/firedrakeproject/firedrake",
-	"content": "Firedrake is an automated system for the portable solution of partial differential equations using the finite element method (FEM)"
+	"gitlab/pvst/asi": {
+	"id": "gitlab/pvst/asi",
+	"title": "gitlab/pvst/asi",
+	"url": " https://rseng.github.io/software/repository/gitlab/pvst/asi",
+	"content": "Atomic Simulations Interface"
 	},
-	"github/nathanchara/l1periodogram": {
-	"id": "github/nathanchara/l1periodogram",
-	"title": "github/nathanchara/l1periodogram",
-	"url": " https://rseng.github.io/software/repository/github/nathanchara/l1periodogram",
-	"content": "This repository contains a Python implementation of the l1 periodogram as described in Hara, Boué, Laskar, Correia 2017, MNRAS, Vol. 464, Issue 1, p.1220-1246, with a few additions."
+	"gitlab/ProjectRHEA/flowsolverrhea": {
+	"id": "gitlab/ProjectRHEA/flowsolverrhea",
+	"title": "gitlab/ProjectRHEA/flowsolverrhea",
+	"url": " https://rseng.github.io/software/repository/gitlab/ProjectRHEA/flowsolverrhea",
+	"content": "RHEA: an open-source Reproducible and Hybrid-architecture flow solver Engineered for Academia"
 	},
-	"github/kutaslab/fitgrid": {
-	"id": "github/kutaslab/fitgrid",
-	"title": "github/kutaslab/fitgrid",
-	"url": " https://rseng.github.io/software/repository/github/kutaslab/fitgrid",
-	"content": "Multichannel event-related time-series regression modeling for EEG, MEG, and sensor array data"
+	"gitlab/InspectorCell/inspectorcell": {
+	"id": "gitlab/InspectorCell/inspectorcell",
+	"title": "gitlab/InspectorCell/inspectorcell",
+	"url": " https://rseng.github.io/software/repository/gitlab/InspectorCell/inspectorcell",
+	"content": "InspectorCell provides an efficient workflow and graphical interface to generate high-quality training datasets from
+highly multiplexed microscopy images."
 	},
-	"github/xpsi-group/xpsi": {
-	"id": "github/xpsi-group/xpsi",
-	"title": "github/xpsi-group/xpsi",
-	"url": " https://rseng.github.io/software/repository/github/xpsi-group/xpsi",
-	"content": "X-PSI: X-ray Pulse Simulation and Inference"
+	"gitlab/mule-tools/package-x": {
+	"id": "gitlab/mule-tools/package-x",
+	"title": "gitlab/mule-tools/package-x",
+	"url": " https://rseng.github.io/software/repository/gitlab/mule-tools/package-x",
+	"content": "A re-publication of [Package-X](http://web.archive.org/web/20220619174704/packagex.hepforge.org/). All credit to Hiren Patel!"
 	},
-	"github/xpsi-group/neost": {
-	"id": "github/xpsi-group/neost",
-	"title": "github/xpsi-group/neost",
-	"url": " https://rseng.github.io/software/repository/github/xpsi-group/neost",
-	"content": "None"
+	"gitlab/vincent-sater/umigen": {
+	"id": "gitlab/vincent-sater/umigen",
+	"title": "gitlab/vincent-sater/umigen",
+	"url": " https://rseng.github.io/software/repository/gitlab/vincent-sater/umigen",
+	"content": "UMI-based reads simulator for variant calling evaluation in paired-end sequencing NGS libraries"
 	},
-	"github/SJaffa/Jplots": {
-	"id": "github/SJaffa/Jplots",
-	"title": "github/SJaffa/Jplots",
-	"url": " https://rseng.github.io/software/repository/github/SJaffa/Jplots",
-	"content": "Astrophysical data analysis tool: quantifying the shape of pixelated structures using moments"
+	"gitlab/petsc/petsc": {
+	"id": "gitlab/petsc/petsc",
+	"title": "gitlab/petsc/petsc",
+	"url": " https://rseng.github.io/software/repository/gitlab/petsc/petsc",
+	"content": "PETSc, pronounced PET-see (the S is silent), is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations."
 	},
-	"github/quatrope/feets": {
-	"id": "github/quatrope/feets",
-	"title": "github/quatrope/feets",
-	"url": " https://rseng.github.io/software/repository/github/quatrope/feets",
-	"content": "feATURE eXTRACTOR FOR tIME sERIES"
+	"gitlab/dalton/dalton": {
+	"id": "gitlab/dalton/dalton",
+	"title": "gitlab/dalton/dalton",
+	"url": " https://rseng.github.io/software/repository/gitlab/dalton/dalton",
+	"content": "Public Dalton source code repository."
 	},
-	"github/quatrope/ProperImage": {
-	"id": "github/quatrope/ProperImage",
-	"title": "github/quatrope/ProperImage",
-	"url": " https://rseng.github.io/software/repository/github/quatrope/ProperImage",
-	"content": "Proper Image utils for astronomy. "
+	"gitlab/cirad-apps/phylostems": {
+	"id": "gitlab/cirad-apps/phylostems",
+	"title": "gitlab/cirad-apps/phylostems",
+	"url": " https://rseng.github.io/software/repository/gitlab/cirad-apps/phylostems",
+	"content": "**phylostems** is a graphical tool developped by CIRAD (UMR PVBMT) to explore temporal signal at various evolutionary scales in heterochronous nucleic acid sequences datasets."
 	},
-	"github/AlexandrosAntoniadis/ODUSSEAS": {
-	"id": "github/AlexandrosAntoniadis/ODUSSEAS",
-	"title": "github/AlexandrosAntoniadis/ODUSSEAS",
-	"url": " https://rseng.github.io/software/repository/github/AlexandrosAntoniadis/ODUSSEAS",
+	"gitlab/wpettersson/kep_solver": {
+	"id": "gitlab/wpettersson/kep_solver",
+	"title": "gitlab/wpettersson/kep_solver",
+	"url": " https://rseng.github.io/software/repository/gitlab/wpettersson/kep_solver",
+	"content": "A Python package for reading and solving single instances of kidney exchange problems. "
+	},
+	"gitlab/thartwig/asloth": {
+	"id": "gitlab/thartwig/asloth",
+	"title": "gitlab/thartwig/asloth",
+	"url": " https://rseng.github.io/software/repository/gitlab/thartwig/asloth",
+	"content": "Semi-analytical model A-SLOTH (Ancient Stars and Local Observables by Tracing Halos)"
+	},
+	"gitlab/imoralc/malu-ifs-visualization-tool": {
+	"id": "gitlab/imoralc/malu-ifs-visualization-tool",
+	"title": "gitlab/imoralc/malu-ifs-visualization-tool",
+	"url": " https://rseng.github.io/software/repository/gitlab/imoralc/malu-ifs-visualization-tool",
 	"content": "None"
 	},
-	"github/aidenlab/juicer": {
-	"id": "github/aidenlab/juicer",
-	"title": "github/aidenlab/juicer",
-	"url": " https://rseng.github.io/software/repository/github/aidenlab/juicer",
-	"content": "A One-Click System for Analyzing Loop-Resolution Hi-C Experiments"
+	"gitlab/esa/pyxel": {
+	"id": "gitlab/esa/pyxel",
+	"title": "gitlab/esa/pyxel",
+	"url": " https://rseng.github.io/software/repository/gitlab/esa/pyxel",
+	"content": "Pyxel is a general detector simulation framework. An easy-to-use framework that can simulate a variety of imaging detector effects combined on images (e.g. radiation and optical effects, noises) made by CCD or CMOS-based detectors."
 	},
-	"github/mes5k/amap-align": {
-	"id": "github/mes5k/amap-align",
-	"title": "github/mes5k/amap-align",
-	"url": " https://rseng.github.io/software/repository/github/mes5k/amap-align",
-	"content": "Automatically exported from code.google.com/p/amap-align"
+	"gitlab/ampere2/metalwalls": {
+	"id": "gitlab/ampere2/metalwalls",
+	"title": "gitlab/ampere2/metalwalls",
+	"url": " https://rseng.github.io/software/repository/gitlab/ampere2/metalwalls",
+	"content": ""
 	},
-	"github/lightning-project/lightning": {
-	"id": "github/lightning-project/lightning",
-	"title": "github/lightning-project/lightning",
-	"url": " https://rseng.github.io/software/repository/github/lightning-project/lightning",
-	"content": "Lightning: Fast data processing using GPUs on distributed platforms"
+	"gitlab/chjordan/sslf": {
+	"id": "gitlab/chjordan/sslf",
+	"title": "gitlab/chjordan/sslf",
+	"url": " https://rseng.github.io/software/repository/gitlab/chjordan/sslf",
+	"content": "Simple Spectral Line Finder"
 	},
-	"github/sybila/biodivine-aeon-py": {
-	"id": "github/sybila/biodivine-aeon-py",
-	"title": "github/sybila/biodivine-aeon-py",
-	"url": " https://rseng.github.io/software/repository/github/sybila/biodivine-aeon-py",
-	"content": "None"
+	"gitlab/magnumpi/magnumpi": {
+	"id": "gitlab/magnumpi/magnumpi",
+	"title": "gitlab/magnumpi/magnumpi",
+	"url": " https://rseng.github.io/software/repository/gitlab/magnumpi/magnumpi",
+	"content": "Potential Integrator"
 	},
-	"github/UM-PEPL/HallThruster.jl": {
-	"id": "github/UM-PEPL/HallThruster.jl",
-	"title": "github/UM-PEPL/HallThruster.jl",
-	"url": " https://rseng.github.io/software/repository/github/UM-PEPL/HallThruster.jl",
-	"content": "An open-source fluid Hall thruster code"
+	"gitlab/pyFBS/pyFBS": {
+	"id": "gitlab/pyFBS/pyFBS",
+	"title": "gitlab/pyFBS/pyFBS",
+	"url": " https://rseng.github.io/software/repository/gitlab/pyFBS/pyFBS",
+	"content": "A Python package for Frequency Based Substructuring and Transfer Path Analysis"
 	},
-	"github/ExoplanetML/Nigraha": {
-	"id": "github/ExoplanetML/Nigraha",
-	"title": "github/ExoplanetML/Nigraha",
-	"url": " https://rseng.github.io/software/repository/github/ExoplanetML/Nigraha",
-	"content": "A neural network based pipeline to identify and evaluate planet candidates from TESS light curves."
+	"gitlab/dglaeser/fieldcompare": {
+	"id": "gitlab/dglaeser/fieldcompare",
+	"title": "gitlab/dglaeser/fieldcompare",
+	"url": " https://rseng.github.io/software/repository/gitlab/dglaeser/fieldcompare",
+	"content": "Python package with command-line interface to compare field data"
 	},
-	"github/clawpack/pyclaw": {
-	"id": "github/clawpack/pyclaw",
-	"title": "github/clawpack/pyclaw",
-	"url": " https://rseng.github.io/software/repository/github/clawpack/pyclaw",
-	"content": "PyClaw is a Python-based interface to the algorithms of Clawpack and SharpClaw.  It also contains the PetClaw package, which adds parallelism through PETSc."
+	"gitlab/random-quintessence/random-quintessence": {
+	"id": "gitlab/random-quintessence/random-quintessence",
+	"title": "gitlab/random-quintessence/random-quintessence",
+	"url": " https://rseng.github.io/software/repository/gitlab/random-quintessence/random-quintessence",
+	"content": "None"
 	},
-	"github/clawpack/clawpack": {
-	"id": "github/clawpack/clawpack",
-	"title": "github/clawpack/clawpack",
-	"url": " https://rseng.github.io/software/repository/github/clawpack/clawpack",
-	"content": "Package for solving hyperbolic systems of partial differential equations"
+	"gitlab/open-darts/open-darts": {
+	"id": "gitlab/open-darts/open-darts",
+	"title": "gitlab/open-darts/open-darts",
+	"url": " https://rseng.github.io/software/repository/gitlab/open-darts/open-darts",
+	"content": "The DARTS framework is designed for forward and inverse modeling in geo-energy applications."
 	},
-	"github/Cantera/cantera": {
-	"id": "github/Cantera/cantera",
-	"title": "github/Cantera/cantera",
-	"url": " https://rseng.github.io/software/repository/github/Cantera/cantera",
-	"content": "Chemical kinetics, thermodynamics, and transport tool suite"
+	"gitlab/permafrostnet/teaspoon": {
+	"id": "gitlab/permafrostnet/teaspoon",
+	"title": "gitlab/permafrostnet/teaspoon",
+	"url": " https://rseng.github.io/software/repository/gitlab/permafrostnet/teaspoon",
+	"content": "Python for permafrost temperature data"
 	},
-	"github/zheng-lh/UBER": {
-	"id": "github/zheng-lh/UBER",
-	"title": "github/zheng-lh/UBER",
-	"url": " https://rseng.github.io/software/repository/github/zheng-lh/UBER",
-	"content": "Universal Boltzmann Equation Solver"
+	"gitlab/treangenlab/emu": {
+	"id": "gitlab/treangenlab/emu",
+	"title": "gitlab/treangenlab/emu",
+	"url": " https://rseng.github.io/software/repository/gitlab/treangenlab/emu",
+	"content": "EMu is a relative abundance estimator for 16S genomic sequences"
 	},
-	"github/JensUweUlrich/ReadBouncer": {
-	"id": "github/JensUweUlrich/ReadBouncer",
-	"title": "github/JensUweUlrich/ReadBouncer",
-	"url": " https://rseng.github.io/software/repository/github/JensUweUlrich/ReadBouncer",
-	"content": "Fast and scalable nanopore adaptive sampling"
+	"gitlab/treangenlab/vulcan": {
+	"id": "gitlab/treangenlab/vulcan",
+	"title": "gitlab/treangenlab/vulcan",
+	"url": " https://rseng.github.io/software/repository/gitlab/treangenlab/vulcan",
+	"content": ""
 	},
-	"github/WelbornGroup/ELECTRIC": {
-	"id": "github/WelbornGroup/ELECTRIC",
-	"title": "github/WelbornGroup/ELECTRIC",
-	"url": " https://rseng.github.io/software/repository/github/WelbornGroup/ELECTRIC",
-	"content": "ELECTRIC: Electric fields Leveraged from multipole Expansion Calculations in Tinker Rapid Interface Code."
+	"gitlab/polmag/PORTA": {
+	"id": "gitlab/polmag/PORTA",
+	"title": "gitlab/polmag/PORTA",
+	"url": " https://rseng.github.io/software/repository/gitlab/polmag/PORTA",
+	"content": "PORTA: A three-dimensional multilevel radiative transfer code for modeling the intensity and polarization of spectral lines with massively parallel computers"
 	},
-	"github/pavolgaj/ObsPlanner": {
-	"id": "github/pavolgaj/ObsPlanner",
-	"title": "github/pavolgaj/ObsPlanner",
-	"url": " https://rseng.github.io/software/repository/github/pavolgaj/ObsPlanner",
-	"content": "Simple program for planning and managing astronomical observations"
+	"gitlab/dsbowen/conditional-inference": {
+	"id": "gitlab/dsbowen/conditional-inference",
+	"title": "gitlab/dsbowen/conditional-inference",
+	"url": " https://rseng.github.io/software/repository/gitlab/dsbowen/conditional-inference",
+	"content": "None"
 	},
-	"github/pavolgaj/OCFit": {
-	"id": "github/pavolgaj/OCFit",
-	"title": "github/pavolgaj/OCFit",
-	"url": " https://rseng.github.io/software/repository/github/pavolgaj/OCFit",
-	"content": "Python package for fitting of O-C diagrams."
+	"gitlab/chaver/choco-mining": {
+	"id": "gitlab/chaver/choco-mining",
+	"title": "gitlab/chaver/choco-mining",
+	"url": " https://rseng.github.io/software/repository/gitlab/chaver/choco-mining",
+	"content": "Data mining with Choco solver"
+	},
+	"gitlab/moerman1/fhi-cc4s": {
+	"id": "gitlab/moerman1/fhi-cc4s",
+	"title": "gitlab/moerman1/fhi-cc4s",
+	"url": " https://rseng.github.io/software/repository/gitlab/moerman1/fhi-cc4s",
+	"content": "This project constitutes the interface between the Fritz Haber Institute ab initio molecular simulations (FHI-aims) and the Coupled Cluster for Solids (CC4S) code developed by Felix Hummel and Adreas Grueneis at the TU Wien. 
+"
 	}
 };