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| 1 | +package org.janelia.render.client.newsolver; |
| 2 | + |
| 3 | +import java.io.IOException; |
| 4 | +import java.text.SimpleDateFormat; |
| 5 | +import java.util.ArrayList; |
| 6 | +import java.util.List; |
| 7 | + |
| 8 | +import org.janelia.alignment.match.CanvasMatches; |
| 9 | +import org.janelia.alignment.spec.stack.StackMetaData; |
| 10 | +import org.janelia.alignment.util.LogbackTestTools; |
| 11 | +import org.janelia.render.client.RenderDataClient; |
| 12 | + |
| 13 | +import static org.janelia.render.client.newsolver.DistributedAffineBlockSolverTest.*; |
| 14 | + |
| 15 | +/** |
| 16 | + * Tests the {@link DistributedAffineBlockSolver} class. |
| 17 | + */ |
| 18 | +@SuppressWarnings({"SameParameterValue", "unused"}) |
| 19 | +public class DistributedAffineBlockSolverTestG { |
| 20 | + |
| 21 | + // -------------------------------------------------------------- |
| 22 | + // The following methods support ad-hoc interactive testing with external render web services. |
| 23 | + // Consequently, they aren't included in the unit test suite. |
| 24 | + |
| 25 | + private static final String SOURCE_STACK = "w60_s360_r00_gc_pa_mat_render"; |
| 26 | + private static final List<Double> Z_VALUES_1 = List.of(1.0); |
| 27 | + private static final List<Double> Z_VALUES_2 = List.of(2.0); |
| 28 | + private static final String SOURCE_MATCH_COLLECTION = "w60_s360_r00_gc_pa_mat_render_match_cmB"; |
| 29 | + |
| 30 | + private static final boolean PRINT_PME_LINKS = false; // set to true to print Point Match Explorer links |
| 31 | + |
| 32 | + // NOTE: project should differ from other tests, 'test_c...' instead of 'test_...' |
| 33 | + private static final String TEST_PROJECT = "test_g_mfov_as_tile"; |
| 34 | + |
| 35 | + private static final String TEST_G_Z1_STACK = "test_g_z1_mfovs"; |
| 36 | + private static final String TEST_G_Z1_MATCH_COLLECTION = "test_g_z1_mfovs_match"; |
| 37 | + |
| 38 | + private static final String TEST_G_Z2_STACK = "test_g_z2_mfovs"; |
| 39 | + private static final String TEST_G_Z2_MATCH_COLLECTION = "test_g_z2_mfovs_match"; |
| 40 | + |
| 41 | + public static void main(final String[] args) throws Exception { |
| 42 | + |
| 43 | + // setupTestInputData(); // TODO: uncomment to setup test input data |
| 44 | + |
| 45 | + final SimpleDateFormat sdf = new SimpleDateFormat("yyyyMMdd_HHmmss"); |
| 46 | + final String alignSuffixWithTime = "_align_" + sdf.format(System.currentTimeMillis()); |
| 47 | + |
| 48 | + LogbackTestTools.setRootLogLevelToError(); // hide all logging |
| 49 | + |
| 50 | + debugInconsistentAlignments(TEST_PROJECT, |
| 51 | + TEST_G_Z1_STACK, |
| 52 | + Z_VALUES_1, |
| 53 | + TEST_G_Z1_MATCH_COLLECTION, |
| 54 | + new char[]{'a'}, |
| 55 | + alignSuffixWithTime, |
| 56 | + false); |
| 57 | + |
| 58 | + debugInconsistentAlignments(TEST_PROJECT, |
| 59 | + TEST_G_Z2_STACK, |
| 60 | + Z_VALUES_2, |
| 61 | + TEST_G_Z2_MATCH_COLLECTION, |
| 62 | + new char[]{'a'}, |
| 63 | + alignSuffixWithTime, |
| 64 | + false); |
| 65 | + } |
| 66 | + |
| 67 | + @SuppressWarnings("unused") |
| 68 | + private static void setupTestInputData() |
| 69 | + throws IOException { |
| 70 | + |
| 71 | + final RenderDataClient sourceDataClient = buildSourceProjectClient(); |
| 72 | + final StackMetaData sourceStackMetaData = sourceDataClient.getStackMetaData(SOURCE_STACK); |
| 73 | + |
| 74 | + setupStack(sourceDataClient, sourceStackMetaData, TEST_PROJECT, TEST_G_Z1_STACK, Z_VALUES_1, null); |
| 75 | + setupStack(sourceDataClient, sourceStackMetaData, TEST_PROJECT, TEST_G_Z2_STACK, Z_VALUES_2, null); |
| 76 | + |
| 77 | + final RenderDataClient sourceMatchClient = buildClient(SOURCE_MATCH_COLLECTION); |
| 78 | + |
| 79 | + List<CanvasMatches> sourceCmList = new ArrayList<>(sourceMatchClient.getMatchesWithPGroupId(String.valueOf(1.0), |
| 80 | + false)); |
| 81 | + setupMatchCollection(sourceCmList, TEST_G_Z1_MATCH_COLLECTION, |
| 82 | + null, null, false, null); |
| 83 | + |
| 84 | + sourceCmList = new ArrayList<>(sourceMatchClient.getMatchesWithPGroupId(String.valueOf(2.0), |
| 85 | + false)); |
| 86 | + setupMatchCollection(sourceCmList, TEST_G_Z2_MATCH_COLLECTION, |
| 87 | + null, null, false, null); |
| 88 | + } |
| 89 | + |
| 90 | +} |
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