use ad.concat

berombau · berombau · commit ad9f7adf82ba · 2024-02-02T11:35:00.000+01:00
diff --git a/src/FlowSOM/pp/fcs_functions.py b/src/FlowSOM/pp/fcs_functions.py
@@ -52,7 +52,7 @@ def aggregate_flowframes(filenames, c_total, channels=None, keep_order=False):
             np.add(file_ids, np.random.normal(loc=0.0, scale=0.1, size=len(file_ids))), dtype=np.float32
         )
         flow_frame.append(f)
-    flow_frame = ad.AnnData.concatenate(*flow_frame, join="outer", uns_merge="first")
+    flow_frame = ad.concat(flow_frame, join="outer", uns_merge="first")
     return flow_frame
 
 

Original file line number	Diff line number	Diff line change
`@@ -52,7 +52,7 @@ def aggregate_flowframes(filenames, c_total, channels=None, keep_order=False):`
`52`	`52`	`np.add(file_ids, np.random.normal(loc=0.0, scale=0.1, size=len(file_ids))), dtype=np.float32`
`53`	`53`	`)`
`54`	`54`	`flow_frame.append(f)`
`55`		`- flow_frame = ad.AnnData.concatenate(*flow_frame, join="outer", uns_merge="first")`
	`55`	`+ flow_frame = ad.concat(flow_frame, join="outer", uns_merge="first")`
`56`	`56`	`return flow_frame`
`57`	`57`
`58`	`58`