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Prepare annotated Visium HD data #9

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#13
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Prepare annotated Visium HD data#9
#13
@csangara

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@csangara
csangara
opened on Jun 11, 2024
  • Download whole brain mouse transcriptomics data and metadata from Allen Brain Institute
  • Subsample single-cell dataset to ~150,000 cells
  • Download mouse Visium HD data from 10x Genomics
  • Run cell2location to deconvolve Visium HD data using the reference atlas
  • Upload Visium HD data in correct format

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