From 36f6916ca42d4e77c803704ac9ae7c91bd6ae9c7 Mon Sep 17 00:00:00 2001
From: unknown <treehyde1@gmail.com>
Date: Tue, 19 Nov 2024 14:53:23 +0100
Subject: [PATCH] more work on RaMP identifiers insertion

---
 omnipath_metabo/schema/_main.py      | 7 ++++---
 omnipath_metabo/schema/_structure.py | 5 ++---
 2 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/omnipath_metabo/schema/_main.py b/omnipath_metabo/schema/_main.py
index 7a123e2..f4aaa81 100644
--- a/omnipath_metabo/schema/_main.py
+++ b/omnipath_metabo/schema/_main.py
@@ -168,9 +168,10 @@ def load(self):
             )
             psycopg2.extras.execute_values(cursor, query, cached_resource, page_size = 1000)
 
+        type(cached_resource)
 
         raw_con.commit()
-        _log("structures have been inserted")
+        _log("structures have been inserted", level = -1)
 
         return_ids = text("SELECT id, smiles FROM structures")
         inserted_str = {
@@ -185,7 +186,7 @@ def load(self):
 
 
         #vself.update_mol_column()
-        _log('resource ids collected.')
+        _log('resource ids collected.', level = -1)
 
         insert_ids = (
             (_id, strids[smiles], resource_key, i==0, resource_labels[i])
@@ -195,7 +196,7 @@ def load(self):
             for i, _id in enumerate(itertools.chain((name, ), cached_resource.cached['struct']['identifiers']))
         )
 
-        _log('inserting identifiers.')
+        _log('inserting identifiers.', level =-1)
         with raw_con.cursor() as cursor:
             query = """
                     INSERT INTO identifiers (identifier, structure_id, resource_id, authoritative, id_type) VALUES %s
diff --git a/omnipath_metabo/schema/_structure.py b/omnipath_metabo/schema/_structure.py
index 8507c9e..c5d89a7 100644
--- a/omnipath_metabo/schema/_structure.py
+++ b/omnipath_metabo/schema/_structure.py
@@ -189,7 +189,6 @@ def __iter__(self):
 class Ramp(ResourceBase):
     scheme = Structure
     name = 'RaMP'
-    id_fields = sorted(ramp.ramp_id_types())
 
     def __iter__(self):
 
@@ -201,9 +200,9 @@ def __iter__(self):
                 'identifiers': (row[2])
                 }
 
-    '''Alternative possibility
+    '''Alternative possibility without editing 
     source_data = {
-        row[]:row[] for row in ramp.ramp_iter('source')
+        row[1]:row[0] for row in ramp.ramp_iter('source')
     }
     for chem_props_row in ramp.ramp_iter('chem_props'):
         source_row = source_data.get(chem_props_row[0])