From 3e4697ecadc78cbf12a8f356147f93dc993e213a Mon Sep 17 00:00:00 2001
From: unknown <treehyde1@gmail.com>
Date: Wed, 16 Oct 2024 13:17:04 +0200
Subject: [PATCH] work on improved data insertion

---
 omnipath_metabo/schema/_main.py | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/omnipath_metabo/schema/_main.py b/omnipath_metabo/schema/_main.py
index 87aa4d8..03cfdbe 100644
--- a/omnipath_metabo/schema/_main.py
+++ b/omnipath_metabo/schema/_main.py
@@ -1,6 +1,7 @@
 import collections
 from sqlalchemy import text, select
 from sqlalchemy.dialects.postgresql import insert
+import psychopg2.extras
 
 from . import _structure
 from ._base import Base
@@ -106,7 +107,10 @@ def load(self):
         self.session.execute(insert_ids)
         self.session.commit()
     
-
+        query = """ 
+        INSERT INTO structures (smiles) VALUES %s
+        """
+        psychopg2.extras.execute_values(query, (), page_size = 1000)
         #self.indexer()
 
     def update_mol_column(self):