From b475893792eecf7c905f6cec0357c7102288ed73 Mon Sep 17 00:00:00 2001 From: Balazs Bohar Date: Tue, 19 Nov 2024 13:34:26 +0000 Subject: [PATCH] Inputs.biogps new DL --- pypath/inputs/biogps.py | 9 +++++++-- 1 file changed, 7 insertions(+), 2 deletions(-) diff --git a/pypath/inputs/biogps.py b/pypath/inputs/biogps.py index a0a5ef389..1c05f7e8a 100644 --- a/pypath/inputs/biogps.py +++ b/pypath/inputs/biogps.py @@ -25,8 +25,9 @@ import pandas as pd +import download_manager as dm + import pypath.resources.urls as urls -import pypath.share.curl as curl import pypath.share.common as common import pypath.utils.taxonomy as taxonomy import pypath.utils.mapping as mapping @@ -83,7 +84,11 @@ def biogps_download(dataset): biogps_urls = urls.urls['biogps'] label = dataset.label if hasattr(dataset, 'label') else dataset url = biogps_urls['url'] % biogps_urls['datasets'][label] - c = curl.Curl(url, silent = False, large = True) + + dmanager = dm.DownloadManager(pkg = 'pypath') + _, item, *_ = dmanager._download(url) + + c = item.open(large = True) the_file = ( common.first(c.result.values())