From c2571595e56bcb43f4517f74d62ff17e875e7ca5 Mon Sep 17 00:00:00 2001 From: deeenes Date: Wed, 7 Feb 2024 00:34:23 +0100 Subject: [PATCH] NCBI HomoloGene went offline, moved it to rescued repo --- pypath/inputs/homologene.py | 2 +- pypath/resources/urls.py | 3 ++- 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/pypath/inputs/homologene.py b/pypath/inputs/homologene.py index d23f69876..a1a8cd34b 100644 --- a/pypath/inputs/homologene.py +++ b/pypath/inputs/homologene.py @@ -36,7 +36,7 @@ def get_homologene(): Returns file pointer. """ - url = urls.urls['homologene']['url'] + url = urls.urls['homologene']['url_rescued'] c = curl.Curl( url = url, diff --git a/pypath/resources/urls.py b/pypath/resources/urls.py index 3d5ed3350..2ff29110f 100644 --- a/pypath/resources/urls.py +++ b/pypath/resources/urls.py @@ -981,8 +981,9 @@ }, 'homologene': { 'label': 'NCBI HomoloGene data, recent release', - 'url': 'https://ftp.ncbi.nih.gov/pub/HomoloGene/' + 'url_original': 'https://ftp.ncbi.nih.gov/pub/HomoloGene/' 'current/homologene.data', + 'url_rescued': 'https://rescued.omnipathdb.org/homologene.data', }, 'mirbase' : { 'label': 'miRBase: miRNA main reference database',