diff --git a/Makefile b/Makefile index 0c0a9676e..ef9b5a9a4 100644 --- a/Makefile +++ b/Makefile @@ -158,8 +158,8 @@ LIBHTS_SOVERSION = 3 # is not strictly necessary and should be removed the next time # LIBHTS_SOVERSION is bumped (see #1144 and # https://developer.apple.com/library/archive/documentation/DeveloperTools/Conceptual/DynamicLibraries/100-Articles/DynamicLibraryDesignGuidelines.html#//apple_ref/doc/uid/TP40002013-SW23) -MACH_O_COMPATIBILITY_VERSION = 3.1.20 -MACH_O_CURRENT_VERSION = 3.1.20 +MACH_O_COMPATIBILITY_VERSION = 3.1.21 +MACH_O_CURRENT_VERSION = 3.1.21 # Force version.h to be remade if $(PACKAGE_VERSION) has changed. version.h: $(if $(wildcard version.h),$(if $(findstring "$(PACKAGE_VERSION)",$(shell cat version.h)),,force)) diff --git a/NEWS b/NEWS index 4a573d91d..f18131df9 100644 --- a/NEWS +++ b/NEWS @@ -1,6 +1,9 @@ Noteworthy changes in release a.b ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +Noteworthy changes in release 1.21 (12th September 2024) +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + The primary user-visible changes in this release are updates to the annot-tsv tool and some speed improvements. Full details of other changes and bugs fixed are below. diff --git a/annot-tsv.1 b/annot-tsv.1 index fcdec29aa..3a6034b11 100644 --- a/annot-tsv.1 +++ b/annot-tsv.1 @@ -1,5 +1,5 @@ '\" t -.TH annot-tsv 1 "15 April 2024" "htslib-1.20" "Bioinformatics tools" +.TH annot-tsv 1 "12 September 2024" "htslib-1.21" "Bioinformatics tools" .\" .\" Copyright (C) 2015, 2017-2018, 2023-2024 Genome Research Ltd. .\" diff --git a/bgzip.1 b/bgzip.1 index fe4225b43..1e115d044 100644 --- a/bgzip.1 +++ b/bgzip.1 @@ -1,4 +1,4 @@ -.TH bgzip 1 "15 April 2024" "htslib-1.20" "Bioinformatics tools" +.TH bgzip 1 "12 September 2024" "htslib-1.21" "Bioinformatics tools" .SH NAME .PP bgzip \- Block compression/decompression utility diff --git a/htsfile.1 b/htsfile.1 index 89a2fe446..e22fdbcda 100644 --- a/htsfile.1 +++ b/htsfile.1 @@ -1,4 +1,4 @@ -.TH htsfile 1 "15 April 2024" "htslib-1.20" "Bioinformatics tools" +.TH htsfile 1 "12 September 2024" "htslib-1.21" "Bioinformatics tools" .SH NAME htsfile \- identify high-throughput sequencing data files .\" diff --git a/htslib-s3-plugin.7 b/htslib-s3-plugin.7 index 3bd868c71..44de65771 100644 --- a/htslib-s3-plugin.7 +++ b/htslib-s3-plugin.7 @@ -1,4 +1,4 @@ -.TH htslib-s3-plugin 7 "15 April 2024" "htslib-1.20" "Bioinformatics tools" +.TH htslib-s3-plugin 7 "12 September 2024" "htslib-1.21" "Bioinformatics tools" .SH NAME htslib-s3-plugin \- htslib AWS S3 plugin .\" diff --git a/htslib.map b/htslib.map index e342f55b5..52ad738bb 100644 --- a/htslib.map +++ b/htslib.map @@ -640,3 +640,13 @@ HTSLIB_1.18 { HTSLIB_1.20 { tbx_conf_gaf; } HTSLIB_1.18; + +HTSLIB_1.21 { + cram_container_get_coords; + cram_container_num2offset; + cram_container_offset2num; + cram_filter_container; + cram_index_extents; + cram_num_containers; + cram_num_containers_between; +} HTSLIB_1.20; diff --git a/htslib/hts.h b/htslib/hts.h index 870ea4532..08bf71c2c 100644 --- a/htslib/hts.h +++ b/htslib/hts.h @@ -489,7 +489,7 @@ const char *hts_version(void); // Immediately after release, bump ZZ to 90 to distinguish in-development // Git repository builds from the release; you may wish to increment this // further when significant features are merged. -#define HTS_VERSION 102090 +#define HTS_VERSION 102190 /*! @abstract Introspection on the features enabled in htslib * diff --git a/tabix.1 b/tabix.1 index 9bf1d6891..f0dc7b519 100644 --- a/tabix.1 +++ b/tabix.1 @@ -1,4 +1,4 @@ -.TH tabix 1 "15 April 2024" "htslib-1.20" "Bioinformatics tools" +.TH tabix 1 "12 September 2024" "htslib-1.21" "Bioinformatics tools" .SH NAME .PP tabix \- Generic indexer for TAB-delimited genome position files diff --git a/version.sh b/version.sh index 98ae48ec0..f35234c2d 100755 --- a/version.sh +++ b/version.sh @@ -24,7 +24,7 @@ # DEALINGS IN THE SOFTWARE. # Master version, for use in tarballs or non-git source copies -VERSION=1.20 +VERSION=1.21 # If we have a git clone, then check against the current tag srcdir=${0%/version.sh}