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toc()## 0.688 sec elapsed## 0.641 sec elapsedMarsh S (2024). scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing. -R package version 2.1.0, https://samuel-marsh.github.io/scCustomize/, https://doi.org/10.5281/zenodo.5706431, https://github.com/samuel-marsh/scCustomize. +R package version 2.1.1, https://samuel-marsh.github.io/scCustomize/, https://doi.org/10.5281/zenodo.5706431, https://github.com/samuel-marsh/scCustomize.
@Manual{,
title = {scCustomize: Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing},
author = {Samuel Marsh},
year = {2024},
- note = {R package version 2.1.0, https://samuel-marsh.github.io/scCustomize/, https://doi.org/10.5281/zenodo.5706431},
+ note = {R package version 2.1.1, https://samuel-marsh.github.io/scCustomize/, https://doi.org/10.5281/zenodo.5706431},
url = {https://github.com/samuel-marsh/scCustomize},
}
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@@ -111,7 +111,22 @@ title_prefix parameter to Iterate_DimPlot_bySample to unify with Meta_Highlight_Plot.as.anndata() to support conversion of Seurat and LIGER objects to anndata format.Convert_Assay() to perform easy conversions of Seurat assays between V3/4 (Assay) and V5 (Assay5) formats.assay_type to allow manual control of assay type when creating Seurat object from LIGER using Liger_to_Seurat.assay_type to allow manual control of assay type when creating Seurat object from LIGER using Liger_to_Seurat. Now as.Seurat.grid_color to Clustered_DotPlot to control the color of grid lines (default is no grid lines).Clustered_DotPlot by additional variable and maintain expression information.Split_Layers() function for V5 objects.as.Seurat.
-DotPlot_scCustom that didn’t correctly pass group.by when plotting (#158).Variable in meta data which contains variable to split data by, (default is "orig.ident").
name of meta.data column used to split layers if setting group.by = "layers".
Assay containing raw data to use, (default is "RNA").