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lines changed Original file line number Diff line number Diff line change @@ -177,10 +177,18 @@ tool that you have chosen.
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choosing 2 should decrease the running time of SATe because subproblem
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alignment will be conducted in parallel.
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+ * "Maximum MB" lets you specify the size of the Java Virtual Machine (JVM)
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+ heap to be allocated when running Java tools such as Opal. This should
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+ be as large as possible. If you get errors when running Java tools, one
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+ possible reason might be that you have allocated insufficient memory to
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+ the JVM given the size of your dataset. By default, the memory defaults
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+ to 1024 MB (versions of SATe prior to 2.0.3 had a default of 2048 MB,
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+ and did not allow the option of changing this).
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* "Job Name" allows you to specify an identifier for the output files created by
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running SATe. Files tagged with this name will appear in the output directory
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when the run completes.
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