Execute Augustus' autoAug.pl automatically if no --singleCPU option is set.
autoautoAug is tested with Augustus 3.2.2 and 2.5.5
- Augustus: https://github.com/Gaius-Augustus/Augustus
- Parallel::Loops: https://metacpan.org/pod/Parallel::Loops
autoautoAug [options] -opt <autoAug.pl_options>
Mandatory:
-opt STR STR is a file containing all autoAug.pl options in the first line sperated by space without
the calling of the autoAug.pl script
Options: [default]
-t INT Number of parallel executed aug-scripts [2]
-speed Execute all aug-scripts from one batch in parallel [off]
Overrides -t
-acp STR STR is the Augustus config path to locate autoAug.pl [automatic from bash variables]
-log STR STR is the prefix for log (STR.log) and error (STR.err) files [autoautoAug]
STR.log will be used to extract the command that will run after a aug-script
batch is finished
-h or -help Print this help and exit