From 0ec97410702f61b29acef80b6377d1232699fa94 Mon Sep 17 00:00:00 2001 From: Isaac Virshup Date: Sun, 11 Apr 2021 17:00:55 +1000 Subject: [PATCH] Release 0.7.6 (#549) * Update release date formatting * Bump scipy version --- docs/release-latest.rst | 20 ++++++++++---------- docs/release-notes.rst | 16 ++++++++-------- pyproject.toml | 2 +- requirements.txt | 2 +- 4 files changed, 20 insertions(+), 20 deletions(-) diff --git a/docs/release-latest.rst b/docs/release-latest.rst index 8bba9a479..43d3025a0 100644 --- a/docs/release-latest.rst +++ b/docs/release-latest.rst @@ -1,8 +1,8 @@ .. role:: small .. role:: smaller -On master -~~~~~~~~~ +0.7.6 :small:`11 April, 2021` +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. rubric:: New features @@ -25,8 +25,8 @@ On master - :func:`anndata.read_loom` arguments `obsm_names` and `varm_names` are now deprecated in favour of `obsm_mapping` and `varm_mapping` :pr:`538` :smaller:`I Virshup` -0.7.5 :small:`2020-11-12` -~~~~~~~~~~~~~~~~~~~~~~~~~ +0.7.5 :small:`12 November, 2020` +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. rubric:: Functionality @@ -38,8 +38,8 @@ On master - Allow `adata.raw = None`, as is documented :pr:`447` :smaller:`I Virshup` - Fix warnings from pandas 1.1 :pr:`425` :smaller:`I Virshup` -0.7.4 :small:`2020-07-10` -~~~~~~~~~~~~~~~~~~~~~~~~~ +0.7.4 :small:`10 July, 2020` +~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. rubric:: Concatenation overhaul :pr:`378` :smaller:`I Virshup` @@ -55,15 +55,15 @@ On master - Fixed error from `AnnData.concatenate` by bumping minimum versions of numpy and pandas :issue:`385` - Fixed colors being incorrectly changed when `AnnData` object was subset :pr:`388` -0.7.3 :small:`2020-05-20` -~~~~~~~~~~~~~~~~~~~~~~~~~ +0.7.3 :small:`20 May, 2020` +~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. rubric:: Bug fixes - Fixed bug where graphs used too much memory when copying :pr:`381` :smaller:`I Virshup` -0.7.2 :small:`2020-05-15` -~~~~~~~~~~~~~~~~~~~~~~~~~ +0.7.2 :small:`15 May, 2020` +~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. rubric:: Concatenation overhaul :smaller:`I Virshup` diff --git a/docs/release-notes.rst b/docs/release-notes.rst index 917ce9944..d772879f4 100644 --- a/docs/release-notes.rst +++ b/docs/release-notes.rst @@ -20,8 +20,8 @@ Version 0.7 .. include:: release-latest.rst -0.7.0 :small:`2020-01-22` -~~~~~~~~~~~~~~~~~~~~~~~~~ +0.7.0 :small:`22 January, 2020` +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .. warning:: Breaking changes introduced between `0.6.22.post1` and `0.7`: @@ -91,8 +91,8 @@ Version 0.6 - iteration over chunks :func:`~anndata.AnnData.chunked_X` and :func:`~anndata.AnnData.chunk_X` :noteversion:`0.6.1` :pr:`20` :smaller:`S Rybakov` -0.6.0 :small:`2018-05-01` -~~~~~~~~~~~~~~~~~~~~~~~~~ +0.6.0 :small:`1 May, 2018` +~~~~~~~~~~~~~~~~~~~~~~~~~~ - compatibility with Seurat converter - tremendous speedup for :func:`~anndata.AnnData.concatenate` @@ -105,8 +105,8 @@ Version 0.6 Version 0.5 ----------- -0.5.0 :small:`2018-02-09` -~~~~~~~~~~~~~~~~~~~~~~~~~ +0.5.0 :small:`9 February, 2018` +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - inform about duplicates in :class:`~anndata.AnnData.var_names` and resolve them using :func:`~anndata.AnnData.var_names_make_unique` - automatically remove unused categories after slicing @@ -120,8 +120,8 @@ Version 0.5 Version 0.4 ----------- -0.4.0 :small:`2017-12-23` -~~~~~~~~~~~~~~~~~~~~~~~~~ +0.4.0 :small:`23 December, 2017` +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - read/write `.loom`_ files - scalability beyond dataset sizes that fit into memory: see this `blog post`_ diff --git a/pyproject.toml b/pyproject.toml index 73c349d9f..a83a3b494 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -35,7 +35,7 @@ requires-python = '>=3.6' requires = [ 'pandas>=1.1.1', # pandas <1.1.1 has pandas/issues/35446 'numpy>=1.16.5', # required by pandas 1.x - 'scipy~=1.0', + 'scipy>1.4', 'h5py', 'natsort', 'packaging>=20', diff --git a/requirements.txt b/requirements.txt index 6084688f8..8dd303e90 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,7 +1,7 @@ # auto-generated from pyproject.toml, DO NOT EDIT pandas>=1.1.1 numpy>=1.16.5 -scipy~=1.0 +scipy>1.4 h5py natsort packaging>=20