nextflow_schema.json

{
  "$schema": "https://json-schema.org/draft/2020-12/schema",
  "$id": "https://raw.githubusercontent.com///nextflow_schema.json",
  "title": " pipeline parameters",
  "description": "",
  "type": "object",
  "$defs": {
    "input_output_options": {
      "title": "Input/output options",
      "type": "object",
      "fa_icon": "fas fa-terminal",
      "description": "Define where the pipeline should find input data and save output data.",
      "required": [
        "email",
        "event"
      ],
      "properties": {
        "email": {
          "type": "string",
          "description": "Enter your email address here.",
          "fa_icon": "fas fa-envelope",
          "help_text": "Set this parameter to your e-mail address to get a summary e-mail with details of the run sent to you when the workflow exits. If set in your user config file (`~/.nextflow/config`) then you don't need to specify this on the command line for every run.",
          "pattern": "^([a-zA-Z0-9_\\-\\.]+)@([a-zA-Z0-9_\\-\\.]+)\\.([a-zA-Z]{2,5})$"
        },
        "event": {
          "type": "string",
          "default": "fog_2025",
          "description": "Which event are you attending?",
          "enum": [
            "general",
            "slas_2025",
            "fog_2025",
            "ismb_bosc_2024",
            "biotechx_2024",
            "ashg_2024"
          ],
          "fa_icon": "fas fa-ticket-alt"
        },
        "outdir": {
          "type": "string",
          "format": "directory-path",
          "description": "The output directory where the results will be saved. You have to use absolute paths to storage on Cloud infrastructure.",
          "fa_icon": "fas fa-folder-open",
          "default": "results"
        },
        "ticket_number_emit_session_id": {
          "type": "boolean"
        }
      }
    }
  },
  "allOf": [
    {
      "$ref": "#/$defs/input_output_options"
    }
  ]
}